Query 005473
Match_columns 695
No_of_seqs 570 out of 3092
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 23:59:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 99.9 1E-26 2.2E-31 243.7 16.3 203 475-695 213-441 (459)
2 KOG0272 U4/U6 small nuclear ri 99.9 9.8E-27 2.1E-31 243.8 15.3 183 476-695 172-356 (459)
3 KOG0263 Transcription initiati 99.9 3.7E-26 8E-31 255.1 17.5 183 476-695 448-630 (707)
4 KOG0279 G protein beta subunit 99.9 3.4E-25 7.3E-30 222.2 21.9 201 472-695 28-244 (315)
5 KOG0271 Notchless-like WD40 re 99.9 2E-25 4.3E-30 231.3 16.5 177 478-691 114-296 (480)
6 KOG0271 Notchless-like WD40 re 99.9 3.7E-25 8.1E-30 229.3 15.1 146 546-691 106-255 (480)
7 KOG0263 Transcription initiati 99.9 2.2E-24 4.7E-29 241.0 19.1 189 501-695 385-588 (707)
8 KOG0319 WD40-repeat-containing 99.9 1.3E-23 2.8E-28 232.7 18.1 209 474-695 379-600 (775)
9 KOG0279 G protein beta subunit 99.9 6.6E-23 1.4E-27 205.9 20.8 172 507-695 29-203 (315)
10 KOG0284 Polyadenylation factor 99.9 1.8E-24 3.9E-29 226.0 9.2 183 474-694 133-316 (464)
11 KOG0286 G-protein beta subunit 99.9 2.5E-22 5.3E-27 202.8 21.5 185 474-695 50-240 (343)
12 KOG0266 WD40 repeat-containing 99.9 2.3E-22 4.9E-27 226.3 23.6 182 479-695 159-345 (456)
13 KOG0286 G-protein beta subunit 99.9 7.3E-22 1.6E-26 199.4 24.2 217 473-695 68-326 (343)
14 KOG0285 Pleiotropic regulator 99.9 1E-22 2.2E-27 209.8 17.8 171 503-695 160-330 (460)
15 KOG0273 Beta-transducin family 99.9 3.9E-22 8.4E-27 211.7 20.7 179 480-695 236-463 (524)
16 KOG0266 WD40 repeat-containing 99.9 7.3E-22 1.6E-26 222.2 24.1 161 507-686 216-379 (456)
17 KOG0295 WD40 repeat-containing 99.9 7.2E-22 1.6E-26 204.3 20.2 169 504-694 203-386 (406)
18 KOG0645 WD40 repeat protein [G 99.9 3.8E-21 8.2E-26 192.6 23.6 183 481-695 16-206 (312)
19 KOG0284 Polyadenylation factor 99.9 8.8E-23 1.9E-27 213.4 12.2 201 473-694 151-360 (464)
20 KOG0273 Beta-transducin family 99.9 2.1E-21 4.5E-26 206.2 21.5 194 478-693 275-502 (524)
21 KOG0315 G-protein beta subunit 99.9 2.7E-21 5.9E-26 191.5 18.6 145 546-691 74-308 (311)
22 KOG0275 Conserved WD40 repeat- 99.9 1.1E-22 2.4E-27 206.9 8.6 184 480-691 214-400 (508)
23 KOG0277 Peroxisomal targeting 99.9 2.9E-21 6.3E-26 191.8 17.9 173 503-695 70-245 (311)
24 KOG0264 Nucleosome remodeling 99.9 4.4E-21 9.5E-26 203.5 18.3 176 507-695 191-384 (422)
25 KOG0265 U5 snRNP-specific prot 99.9 6.8E-21 1.5E-25 193.0 18.8 181 478-695 46-227 (338)
26 KOG0313 Microtubule binding pr 99.9 8.1E-21 1.7E-25 197.4 19.4 185 505-691 204-397 (423)
27 PTZ00421 coronin; Provisional 99.9 7E-20 1.5E-24 206.9 28.1 193 475-695 71-270 (493)
28 KOG0285 Pleiotropic regulator 99.9 1.9E-21 4E-26 200.6 13.5 148 544-694 140-287 (460)
29 KOG0276 Vesicle coat complex C 99.9 5.9E-21 1.3E-25 208.0 18.0 173 502-695 63-238 (794)
30 KOG0645 WD40 repeat protein [G 99.9 3.4E-20 7.3E-25 185.8 21.4 166 504-691 71-241 (312)
31 KOG0295 WD40 repeat-containing 99.9 1E-20 2.3E-25 195.7 17.5 148 545-694 183-344 (406)
32 KOG0276 Vesicle coat complex C 99.9 8.5E-21 1.8E-25 206.7 16.6 169 503-691 106-277 (794)
33 KOG0316 Conserved WD40 repeat- 99.9 2.4E-20 5.2E-25 183.5 17.9 178 478-695 16-194 (307)
34 KOG0281 Beta-TrCP (transducin 99.9 7E-22 1.5E-26 202.7 7.4 213 471-691 206-457 (499)
35 KOG0282 mRNA splicing factor [ 99.8 4.8E-21 1E-25 204.2 12.2 169 505-694 226-484 (503)
36 KOG0277 Peroxisomal targeting 99.8 8.1E-21 1.8E-25 188.7 12.4 168 507-694 118-288 (311)
37 PTZ00421 coronin; Provisional 99.8 1.3E-19 2.8E-24 204.7 23.5 143 549-694 69-221 (493)
38 KOG0291 WD40-repeat-containing 99.8 1.4E-19 3E-24 201.0 21.9 166 507-695 363-531 (893)
39 KOG0647 mRNA export protein (c 99.8 1.5E-19 3.2E-24 183.6 18.7 189 472-694 20-303 (347)
40 cd00200 WD40 WD40 domain, foun 99.8 1E-18 2.2E-23 176.7 24.9 182 477-695 7-188 (289)
41 KOG0281 Beta-TrCP (transducin 99.8 8.5E-21 1.8E-25 194.8 9.2 159 507-691 208-368 (499)
42 KOG0283 WD40 repeat-containing 99.8 1.4E-19 3.1E-24 204.1 19.4 196 477-694 265-511 (712)
43 KOG0308 Conserved WD40 repeat- 99.8 1.8E-19 4E-24 197.5 18.5 202 474-695 39-266 (735)
44 KOG0318 WD40 repeat stress pro 99.8 6.1E-19 1.3E-23 189.6 21.7 164 508-691 162-371 (603)
45 KOG0292 Vesicle coat complex C 99.8 1.2E-19 2.6E-24 203.8 16.7 167 507-695 22-217 (1202)
46 PLN00181 protein SPA1-RELATED; 99.8 1.4E-18 3.1E-23 208.3 27.3 167 506-695 545-719 (793)
47 cd00200 WD40 WD40 domain, foun 99.8 2.5E-18 5.4E-23 173.8 24.9 168 506-695 105-272 (289)
48 PTZ00420 coronin; Provisional 99.8 1.9E-18 4.2E-23 196.8 25.9 140 546-688 65-214 (568)
49 KOG0291 WD40-repeat-containing 99.8 9.3E-19 2E-23 194.4 21.9 167 507-695 320-489 (893)
50 KOG0292 Vesicle coat complex C 99.8 8.1E-19 1.7E-23 197.2 21.0 202 473-695 64-303 (1202)
51 KOG0319 WD40-repeat-containing 99.8 2.3E-19 4.9E-24 199.2 16.1 169 506-691 377-555 (775)
52 KOG0293 WD40 repeat-containing 99.8 6.5E-19 1.4E-23 184.6 18.2 190 474-695 219-493 (519)
53 KOG0267 Microtubule severing p 99.8 3.3E-20 7.1E-25 205.2 8.9 169 505-695 81-249 (825)
54 KOG0318 WD40 repeat stress pro 99.8 1.3E-18 2.8E-23 187.1 20.6 185 478-682 58-276 (603)
55 PTZ00420 coronin; Provisional 99.8 1E-17 2.2E-22 190.9 28.0 176 477-680 72-258 (568)
56 KOG0274 Cdc4 and related F-box 99.8 1.1E-18 2.3E-23 198.2 19.8 178 505-691 260-462 (537)
57 PLN00181 protein SPA1-RELATED; 99.8 5.8E-18 1.3E-22 203.2 27.0 184 479-691 483-669 (793)
58 KOG0296 Angio-associated migra 99.8 5.4E-18 1.2E-22 175.8 20.8 154 506-680 76-229 (399)
59 KOG0264 Nucleosome remodeling 99.8 1.6E-18 3.4E-23 184.3 16.7 179 507-695 138-327 (422)
60 KOG0641 WD40 repeat protein [G 99.8 1.4E-17 3.1E-22 162.9 21.5 194 479-695 32-284 (350)
61 KOG0283 WD40 repeat-containing 99.8 6.1E-19 1.3E-23 199.1 13.3 142 549-695 260-462 (712)
62 KOG0316 Conserved WD40 repeat- 99.8 7.2E-18 1.6E-22 166.2 19.1 200 474-695 31-281 (307)
63 KOG0267 Microtubule severing p 99.8 1.3E-19 2.9E-24 200.4 7.3 170 504-695 38-207 (825)
64 KOG0274 Cdc4 and related F-box 99.8 7.5E-18 1.6E-22 191.2 21.5 163 506-694 218-381 (537)
65 KOG0643 Translation initiation 99.8 1.1E-17 2.3E-22 167.6 19.8 185 473-694 4-241 (327)
66 KOG0310 Conserved WD40 repeat- 99.8 3.6E-18 7.7E-23 182.7 17.3 165 505-691 79-246 (487)
67 KOG0269 WD40 repeat-containing 99.8 1.2E-18 2.6E-23 194.3 14.2 184 474-691 128-317 (839)
68 KOG0306 WD40-repeat-containing 99.8 4.9E-18 1.1E-22 188.7 18.1 183 503-695 463-645 (888)
69 KOG0310 Conserved WD40 repeat- 99.8 1.6E-17 3.5E-22 177.8 21.3 165 507-695 124-290 (487)
70 KOG0265 U5 snRNP-specific prot 99.8 1.6E-17 3.5E-22 168.7 19.6 218 472-695 59-319 (338)
71 KOG0973 Histone transcription 99.8 1.1E-17 2.4E-22 193.1 20.3 202 476-695 66-276 (942)
72 KOG0772 Uncharacterized conser 99.8 3.1E-18 6.8E-23 183.6 14.0 188 477-695 266-468 (641)
73 KOG0282 mRNA splicing factor [ 99.8 4E-19 8.7E-24 189.6 6.9 144 546-691 205-350 (503)
74 KOG1407 WD40 repeat protein [F 99.8 1E-17 2.3E-22 167.2 16.5 180 480-695 21-283 (313)
75 KOG0269 WD40 repeat-containing 99.8 1.7E-18 3.7E-23 193.0 11.9 173 505-695 99-274 (839)
76 KOG0289 mRNA splicing factor [ 99.8 3.8E-17 8.2E-22 172.5 20.3 199 474-694 233-442 (506)
77 KOG0973 Histone transcription 99.8 1.5E-17 3.3E-22 191.9 18.9 179 507-695 26-230 (942)
78 KOG0270 WD40 repeat-containing 99.8 9.1E-18 2E-22 177.8 14.7 190 503-694 189-383 (463)
79 KOG0302 Ribosome Assembly prot 99.7 1.5E-17 3.3E-22 173.0 15.5 183 507-695 166-358 (440)
80 KOG0640 mRNA cleavage stimulat 99.7 1.3E-17 2.8E-22 169.7 14.1 198 476-691 109-313 (430)
81 KOG1446 Histone H3 (Lys4) meth 99.7 2.7E-16 5.8E-21 161.1 23.7 195 480-695 15-286 (311)
82 KOG4283 Transcription-coupled 99.7 7.7E-17 1.7E-21 163.2 19.3 182 506-694 56-256 (397)
83 KOG0275 Conserved WD40 repeat- 99.7 5.7E-18 1.2E-22 172.7 10.2 167 507-695 276-490 (508)
84 KOG0300 WD40 repeat-containing 99.7 4.4E-17 9.5E-22 166.0 16.4 201 478-680 166-396 (481)
85 KOG0278 Serine/threonine kinas 99.7 2.3E-17 5.1E-22 163.7 13.7 165 507-695 113-278 (334)
86 KOG0315 G-protein beta subunit 99.7 7E-17 1.5E-21 160.4 16.8 167 505-695 9-178 (311)
87 KOG0313 Microtubule binding pr 99.7 6.4E-17 1.4E-21 168.6 17.1 203 473-695 116-356 (423)
88 KOG0294 WD40 repeat-containing 99.7 1.6E-16 3.4E-21 162.4 17.8 164 507-691 54-257 (362)
89 KOG1332 Vesicle coat complex C 99.7 3.7E-17 7.9E-22 162.1 12.4 176 503-695 20-218 (299)
90 KOG0302 Ribosome Assembly prot 99.7 6.7E-17 1.5E-21 168.2 14.8 162 479-671 211-378 (440)
91 KOG0301 Phospholipase A2-activ 99.7 6E-17 1.3E-21 179.1 15.3 189 474-691 27-227 (745)
92 KOG0305 Anaphase promoting com 99.7 1E-16 2.2E-21 176.9 16.7 166 506-695 229-398 (484)
93 KOG0646 WD40 repeat protein [G 99.7 3E-16 6.6E-21 167.3 18.3 189 478-694 122-329 (476)
94 KOG0640 mRNA cleavage stimulat 99.7 7.9E-17 1.7E-21 163.9 13.0 175 474-682 167-346 (430)
95 KOG0301 Phospholipase A2-activ 99.7 3.5E-16 7.5E-21 173.1 17.7 187 475-691 74-267 (745)
96 KOG0641 WD40 repeat protein [G 99.7 2.5E-15 5.4E-20 147.3 21.5 196 478-695 88-330 (350)
97 KOG0289 mRNA splicing factor [ 99.7 2.5E-16 5.5E-21 166.3 15.7 167 507-694 232-399 (506)
98 KOG0305 Anaphase promoting com 99.7 4.6E-16 9.9E-21 171.8 18.2 168 507-695 271-442 (484)
99 KOG0306 WD40-repeat-containing 99.7 3.4E-16 7.4E-21 174.2 16.6 148 504-672 518-665 (888)
100 KOG0278 Serine/threonine kinas 99.7 3.3E-17 7.2E-22 162.6 7.7 185 475-694 10-194 (334)
101 KOG0299 U3 snoRNP-associated p 99.7 3.4E-16 7.3E-21 166.6 15.5 196 478-693 141-337 (479)
102 KOG0308 Conserved WD40 repeat- 99.7 5.9E-16 1.3E-20 170.2 17.1 196 474-680 87-295 (735)
103 KOG0288 WD40 repeat protein Ti 99.7 1.2E-15 2.5E-20 160.7 18.5 125 567-695 312-442 (459)
104 KOG0643 Translation initiation 99.7 9E-16 2E-20 153.9 16.2 144 550-695 5-201 (327)
105 KOG0300 WD40 repeat-containing 99.7 2.8E-16 6E-21 160.2 12.3 165 507-693 161-366 (481)
106 KOG0296 Angio-associated migra 99.7 1.4E-15 3.1E-20 158.0 17.5 146 547-695 56-201 (399)
107 KOG0294 WD40 repeat-containing 99.7 3.4E-15 7.4E-20 152.7 17.5 173 509-694 4-178 (362)
108 KOG0772 Uncharacterized conser 99.6 4.1E-15 8.9E-20 159.9 16.9 186 478-695 166-375 (641)
109 KOG0293 WD40 repeat-containing 99.6 1.1E-15 2.3E-20 160.7 12.0 149 544-695 213-365 (519)
110 KOG0303 Actin-binding protein 99.6 1.2E-14 2.6E-19 152.3 19.2 138 474-639 76-214 (472)
111 KOG1407 WD40 repeat protein [F 99.6 1.7E-15 3.6E-20 151.6 10.8 145 549-695 14-242 (313)
112 KOG0303 Actin-binding protein 99.6 3.2E-15 6.9E-20 156.6 13.3 134 548-684 74-216 (472)
113 KOG1274 WD40 repeat protein [G 99.6 1.4E-14 3E-19 164.8 19.4 165 505-695 107-281 (933)
114 KOG1007 WD repeat protein TSSC 99.6 4.7E-15 1E-19 150.0 13.6 149 543-694 110-268 (370)
115 KOG0642 Cell-cycle nuclear pro 99.6 7.2E-15 1.6E-19 159.9 16.0 181 502-695 302-542 (577)
116 KOG2096 WD40 repeat protein [G 99.6 1.2E-14 2.6E-19 148.7 16.3 182 473-671 80-308 (420)
117 KOG0270 WD40 repeat-containing 99.6 1.4E-14 3E-19 153.9 17.1 148 505-672 255-405 (463)
118 KOG1332 Vesicle coat complex C 99.6 6.1E-15 1.3E-19 146.4 13.2 171 506-694 70-266 (299)
119 KOG1036 Mitotic spindle checkp 99.6 3.2E-14 7E-19 145.4 18.6 141 549-694 88-284 (323)
120 KOG4283 Transcription-coupled 99.6 1.4E-14 2.9E-19 147.0 15.1 160 480-674 102-279 (397)
121 KOG2919 Guanine nucleotide-bin 99.6 1.8E-14 3.9E-19 147.8 14.8 190 503-694 120-350 (406)
122 KOG0299 U3 snoRNP-associated p 99.6 2.3E-14 5E-19 152.8 16.0 162 507-691 215-388 (479)
123 KOG0647 mRNA export protein (c 99.6 1.8E-14 3.9E-19 146.8 14.0 134 554-690 26-163 (347)
124 KOG1274 WD40 repeat protein [G 99.6 1.2E-13 2.7E-18 157.3 21.0 200 478-695 12-243 (933)
125 KOG0307 Vesicle coat complex C 99.6 1.1E-14 2.4E-19 169.3 12.7 171 507-695 130-307 (1049)
126 KOG1007 WD repeat protein TSSC 99.6 4.6E-14 9.9E-19 143.0 15.4 181 481-691 125-338 (370)
127 KOG0288 WD40 repeat protein Ti 99.6 5.4E-15 1.2E-19 155.6 8.6 178 478-694 174-351 (459)
128 KOG0268 Sof1-like rRNA process 99.6 2E-14 4.3E-19 149.3 12.3 216 473-694 80-325 (433)
129 KOG2445 Nuclear pore complex c 99.6 5.3E-13 1.1E-17 136.5 22.1 188 477-695 11-234 (361)
130 KOG0646 WD40 repeat protein [G 99.6 1.4E-13 3E-18 147.1 18.7 165 506-693 93-286 (476)
131 KOG1273 WD40 repeat protein [G 99.6 5E-14 1.1E-18 144.2 14.3 131 558-691 26-204 (405)
132 KOG1539 WD repeat protein [Gen 99.5 8.3E-14 1.8E-18 157.1 17.0 172 503-695 457-628 (910)
133 KOG0639 Transducin-like enhanc 99.5 5.9E-14 1.3E-18 150.5 15.0 123 555-679 465-589 (705)
134 KOG4328 WD40 protein [Function 99.5 5.4E-14 1.2E-18 149.9 14.3 196 471-695 178-380 (498)
135 KOG1009 Chromatin assembly com 99.5 9.6E-14 2.1E-18 146.2 14.8 155 507-673 27-197 (434)
136 KOG4378 Nuclear protein COP1 [ 99.5 2.8E-13 6.1E-18 145.2 18.3 168 505-694 132-303 (673)
137 KOG0639 Transducin-like enhanc 99.5 5.8E-14 1.3E-18 150.5 12.6 169 504-694 475-643 (705)
138 KOG0268 Sof1-like rRNA process 99.5 4.2E-14 9.1E-19 147.0 10.9 184 483-695 60-283 (433)
139 KOG1445 Tumor-specific antigen 99.5 9.8E-14 2.1E-18 151.9 11.5 153 507-671 641-798 (1012)
140 KOG4378 Nuclear protein COP1 [ 99.5 3.6E-13 7.8E-18 144.4 15.3 197 477-695 52-261 (673)
141 KOG1446 Histone H3 (Lys4) meth 99.5 6.9E-13 1.5E-17 136.3 16.7 144 546-694 5-150 (311)
142 KOG1408 WD40 repeat protein [F 99.5 2.7E-13 6E-18 150.2 14.6 167 507-695 472-694 (1080)
143 KOG0771 Prolactin regulatory e 99.5 2.8E-13 6E-18 143.6 14.1 167 507-695 157-335 (398)
144 KOG1408 WD40 repeat protein [F 99.5 3.6E-13 7.7E-18 149.3 15.4 185 508-694 394-651 (1080)
145 KOG2048 WD40 repeat protein [G 99.5 1.5E-12 3.2E-17 144.5 20.1 204 481-695 17-256 (691)
146 KOG0290 Conserved WD40 repeat- 99.5 8.7E-13 1.9E-17 133.9 15.7 196 477-695 94-298 (364)
147 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 8.3E-12 1.8E-16 130.1 23.8 134 557-694 158-300 (300)
148 KOG2055 WD40 repeat protein [G 99.5 1.3E-12 2.8E-17 139.6 17.4 202 474-695 208-446 (514)
149 KOG0290 Conserved WD40 repeat- 99.5 7.5E-13 1.6E-17 134.4 14.4 170 507-694 164-345 (364)
150 KOG1063 RNA polymerase II elon 99.5 1.9E-13 4.1E-18 151.7 10.5 147 546-694 516-674 (764)
151 KOG2394 WD40 protein DMR-N9 [G 99.5 9.6E-13 2.1E-17 142.6 15.5 179 480-675 220-456 (636)
152 KOG1273 WD40 repeat protein [G 99.5 2.2E-12 4.7E-17 132.3 17.2 166 507-694 36-303 (405)
153 KOG0644 Uncharacterized conser 99.4 7.6E-14 1.6E-18 156.9 6.7 165 507-695 203-449 (1113)
154 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 1.5E-11 3.2E-16 128.2 23.2 163 507-695 2-167 (300)
155 KOG0649 WD40 repeat protein [G 99.4 2.3E-12 5.1E-17 128.0 15.8 164 503-680 19-195 (325)
156 COG2319 FOG: WD40 repeat [Gene 99.4 3E-11 6.5E-16 127.5 25.5 166 507-694 168-338 (466)
157 KOG0307 Vesicle coat complex C 99.4 3.5E-13 7.7E-18 156.8 10.7 189 480-694 65-263 (1049)
158 KOG2394 WD40 protein DMR-N9 [G 99.4 9.8E-13 2.1E-17 142.5 12.9 137 555-694 219-384 (636)
159 KOG2445 Nuclear pore complex c 99.4 1.3E-11 2.7E-16 126.5 20.0 175 506-691 73-296 (361)
160 COG2319 FOG: WD40 repeat [Gene 99.4 1.9E-11 4.1E-16 129.1 22.4 145 546-694 146-294 (466)
161 KOG1310 WD40 repeat protein [G 99.4 3.7E-13 7.9E-18 145.8 9.3 125 548-672 43-179 (758)
162 KOG1009 Chromatin assembly com 99.4 1.1E-12 2.4E-17 138.3 12.3 138 555-694 13-175 (434)
163 KOG1063 RNA polymerase II elon 99.4 2E-12 4.4E-17 143.6 14.3 186 474-694 520-733 (764)
164 KOG1188 WD40 repeat protein [G 99.4 2.5E-12 5.5E-17 133.2 13.6 166 507-692 41-220 (376)
165 KOG0649 WD40 repeat protein [G 99.4 2E-11 4.2E-16 121.6 18.4 172 507-691 73-254 (325)
166 PF08662 eIF2A: Eukaryotic tra 99.4 4E-11 8.6E-16 120.0 20.4 119 555-680 59-187 (194)
167 KOG1524 WD40 repeat-containing 99.4 2.3E-12 5E-17 139.4 11.4 163 507-695 76-238 (737)
168 KOG1034 Transcriptional repres 99.4 2.6E-11 5.6E-16 125.2 18.4 118 553-672 87-212 (385)
169 KOG0321 WD40 repeat-containing 99.4 2.9E-12 6.4E-17 141.2 12.2 159 504-676 62-253 (720)
170 KOG1034 Transcriptional repres 99.3 5.3E-12 1.2E-16 130.1 12.1 143 506-670 105-278 (385)
171 KOG4328 WD40 protein [Function 99.3 6.5E-12 1.4E-16 134.2 13.1 147 507-671 248-399 (498)
172 KOG0642 Cell-cycle nuclear pro 99.3 1.3E-11 2.7E-16 134.9 15.2 166 507-684 357-574 (577)
173 KOG1523 Actin-related protein 99.3 1.1E-11 2.4E-16 127.6 13.8 184 479-695 10-217 (361)
174 KOG2096 WD40 repeat protein [G 99.3 1.6E-11 3.5E-16 126.0 14.2 183 473-669 200-400 (420)
175 KOG0644 Uncharacterized conser 99.3 3.3E-13 7.1E-18 151.9 1.7 120 546-671 181-300 (1113)
176 KOG1036 Mitotic spindle checkp 99.3 3.1E-11 6.7E-16 123.8 14.3 130 555-690 13-142 (323)
177 KOG4594 Sequence-specific sing 99.3 2.1E-12 4.5E-17 130.1 4.8 77 4-81 12-92 (354)
178 KOG1445 Tumor-specific antigen 99.3 2.4E-11 5.3E-16 133.4 13.3 162 506-680 92-258 (1012)
179 KOG0321 WD40 repeat-containing 99.3 2.8E-11 6.1E-16 133.6 13.4 187 507-695 158-371 (720)
180 KOG2048 WD40 repeat protein [G 99.3 2.5E-10 5.4E-15 127.1 20.3 159 531-693 46-214 (691)
181 KOG1587 Cytoplasmic dynein int 99.3 9.3E-11 2E-15 133.1 17.1 193 474-694 237-496 (555)
182 KOG1539 WD repeat protein [Gen 99.3 1.9E-10 4E-15 130.4 18.5 165 507-691 173-342 (910)
183 KOG1310 WD40 repeat protein [G 99.3 3.7E-11 8.1E-16 130.5 12.4 162 476-671 47-231 (758)
184 KOG1538 Uncharacterized conser 99.2 4.3E-11 9.3E-16 132.1 12.5 174 477-695 10-187 (1081)
185 KOG0650 WD40 repeat nucleolar 99.2 4.1E-11 8.9E-16 131.4 11.0 140 553-695 564-716 (733)
186 KOG2055 WD40 repeat protein [G 99.2 5.6E-10 1.2E-14 119.6 18.2 137 556-695 345-493 (514)
187 KOG0322 G-protein beta subunit 99.2 2.8E-10 6E-15 114.7 14.4 141 553-695 148-304 (323)
188 KOG2110 Uncharacterized conser 99.2 7.3E-10 1.6E-14 116.2 17.7 119 553-673 127-250 (391)
189 KOG0322 G-protein beta subunit 99.2 9.1E-11 2E-15 118.1 10.4 153 507-670 166-322 (323)
190 KOG2139 WD40 repeat protein [G 99.2 1.9E-09 4.2E-14 112.7 19.1 168 478-667 139-307 (445)
191 PRK01742 tolB translocation pr 99.2 5.1E-10 1.1E-14 125.4 16.0 137 550-695 286-426 (429)
192 KOG2106 Uncharacterized conser 99.2 2.6E-09 5.7E-14 115.5 20.3 137 551-695 364-502 (626)
193 KOG4227 WD40 repeat protein [G 99.1 3.9E-10 8.5E-15 118.3 13.5 144 548-694 49-204 (609)
194 KOG0650 WD40 repeat nucleolar 99.1 9E-10 1.9E-14 121.1 16.8 151 542-695 387-577 (733)
195 KOG2106 Uncharacterized conser 99.1 1.7E-09 3.8E-14 116.9 18.7 158 509-695 260-458 (626)
196 KOG0280 Uncharacterized conser 99.1 2.1E-09 4.6E-14 109.9 17.7 136 557-694 123-263 (339)
197 KOG4227 WD40 repeat protein [G 99.1 6.8E-10 1.5E-14 116.6 14.4 155 506-673 68-227 (609)
198 KOG1517 Guanine nucleotide bin 99.1 9.1E-10 2E-14 127.3 16.4 136 555-694 1208-1361(1387)
199 PF08662 eIF2A: Eukaryotic tra 99.1 2.5E-09 5.4E-14 107.1 17.5 130 559-695 9-154 (194)
200 KOG1188 WD40 repeat protein [G 99.1 8.1E-10 1.8E-14 114.8 13.5 157 506-679 84-250 (376)
201 PRK01742 tolB translocation pr 99.1 1.1E-09 2.5E-14 122.6 15.9 138 549-695 197-343 (429)
202 KOG1523 Actin-related protein 99.1 1.2E-09 2.6E-14 112.8 14.3 140 554-695 9-157 (361)
203 KOG2919 Guanine nucleotide-bin 99.1 6.4E-09 1.4E-13 107.5 17.8 188 484-695 54-261 (406)
204 KOG3881 Uncharacterized conser 99.1 2.7E-09 5.9E-14 112.6 15.3 166 503-679 158-328 (412)
205 KOG4547 WD40 repeat-containing 99.1 8.4E-09 1.8E-13 113.9 19.6 122 566-691 69-192 (541)
206 KOG0974 WD-repeat protein WDR6 99.1 1.1E-09 2.4E-14 127.1 13.4 143 506-672 145-289 (967)
207 KOG1517 Guanine nucleotide bin 99.0 3.4E-09 7.5E-14 122.7 16.7 181 506-694 1123-1314(1387)
208 KOG2139 WD40 repeat protein [G 99.0 4.6E-09 1E-13 109.9 16.0 177 478-695 97-291 (445)
209 KOG2110 Uncharacterized conser 99.0 1.1E-08 2.4E-13 107.4 18.1 134 556-695 88-229 (391)
210 KOG1524 WD40 repeat-containing 99.0 2.4E-09 5.3E-14 116.4 12.9 134 507-666 117-250 (737)
211 KOG1963 WD40 repeat protein [G 99.0 9.5E-09 2.1E-13 117.7 17.9 169 504-695 26-303 (792)
212 PRK05137 tolB translocation pr 99.0 2.9E-08 6.4E-13 111.4 21.3 142 549-695 195-344 (435)
213 KOG1272 WD40-repeat-containing 99.0 1.2E-09 2.7E-14 117.1 8.9 142 546-691 201-342 (545)
214 KOG3914 WD repeat protein WDR4 99.0 5.2E-09 1.1E-13 111.1 13.4 161 504-680 72-232 (390)
215 PRK02889 tolB translocation pr 99.0 2.5E-08 5.3E-13 111.8 19.6 135 555-695 239-381 (427)
216 PRK11028 6-phosphogluconolacto 99.0 3.9E-08 8.4E-13 106.0 19.8 136 557-695 127-284 (330)
217 PRK02889 tolB translocation pr 99.0 2.1E-08 4.5E-13 112.4 18.3 142 551-695 191-338 (427)
218 PRK11028 6-phosphogluconolacto 98.9 5E-08 1.1E-12 105.1 20.3 166 509-695 5-185 (330)
219 PRK05137 tolB translocation pr 98.9 5.9E-08 1.3E-12 109.0 21.6 138 552-695 242-387 (435)
220 PRK03629 tolB translocation pr 98.9 3.7E-08 7.9E-13 110.5 19.5 137 552-694 283-427 (429)
221 KOG1240 Protein kinase contain 98.9 4E-08 8.6E-13 115.7 19.7 177 503-694 1058-1248(1431)
222 KOG4547 WD40 repeat-containing 98.9 4.3E-08 9.4E-13 108.4 18.1 146 507-672 71-221 (541)
223 PRK04922 tolB translocation pr 98.9 6.4E-08 1.4E-12 108.7 20.1 135 555-695 247-389 (433)
224 PRK04922 tolB translocation pr 98.9 5.3E-08 1.1E-12 109.4 19.1 142 549-695 197-346 (433)
225 PRK03629 tolB translocation pr 98.9 1.4E-07 3.1E-12 105.8 22.0 132 558-695 245-384 (429)
226 KOG0974 WD-repeat protein WDR6 98.9 4.3E-08 9.4E-13 114.1 18.0 130 560-694 138-268 (967)
227 KOG1587 Cytoplasmic dynein int 98.9 2.6E-08 5.5E-13 113.5 15.5 124 548-672 391-517 (555)
228 KOG2111 Uncharacterized conser 98.9 1.2E-07 2.6E-12 98.2 18.6 105 566-672 147-257 (346)
229 KOG3881 Uncharacterized conser 98.9 8.8E-08 1.9E-12 101.4 17.4 176 502-695 111-301 (412)
230 KOG1538 Uncharacterized conser 98.8 1.9E-07 4.1E-12 103.9 20.0 198 477-695 51-274 (1081)
231 KOG2111 Uncharacterized conser 98.8 3.1E-07 6.8E-12 95.2 19.6 80 549-628 175-257 (346)
232 KOG1272 WD40-repeat-containing 98.8 1.2E-08 2.6E-13 109.8 9.2 165 481-669 190-360 (545)
233 KOG0771 Prolactin regulatory e 98.8 1.7E-08 3.6E-13 107.7 9.1 134 559-695 148-292 (398)
234 TIGR02800 propeller_TolB tol-p 98.8 3.4E-07 7.3E-12 101.7 20.1 141 550-695 184-332 (417)
235 PRK01029 tolB translocation pr 98.8 5E-07 1.1E-11 101.4 21.1 137 557-695 232-381 (428)
236 PRK01029 tolB translocation pr 98.8 3.7E-07 8E-12 102.4 20.1 134 557-694 282-424 (428)
237 KOG2321 WD40 repeat protein [G 98.8 7.6E-08 1.6E-12 105.9 13.5 139 553-694 173-323 (703)
238 KOG2321 WD40 repeat protein [G 98.7 4.2E-07 9.2E-12 100.1 17.3 132 560-694 138-281 (703)
239 PRK00178 tolB translocation pr 98.7 9.8E-07 2.1E-11 98.8 20.5 141 550-695 193-341 (430)
240 PRK00178 tolB translocation pr 98.7 1.5E-06 3.2E-11 97.3 21.3 134 556-695 243-384 (430)
241 TIGR02800 propeller_TolB tol-p 98.7 1.5E-06 3.2E-11 96.5 20.7 137 553-695 231-375 (417)
242 KOG1334 WD40 repeat protein [G 98.7 8.2E-08 1.8E-12 103.9 9.6 149 546-695 133-292 (559)
243 KOG2695 WD40 repeat protein [G 98.6 4.5E-08 9.8E-13 102.1 7.1 135 555-691 252-400 (425)
244 KOG1963 WD40 repeat protein [G 98.6 7.7E-07 1.7E-11 102.4 17.4 158 506-680 217-384 (792)
245 PRK04792 tolB translocation pr 98.6 1.8E-06 3.9E-11 97.5 19.5 138 551-694 301-446 (448)
246 KOG0280 Uncharacterized conser 98.6 3.4E-07 7.4E-12 94.0 11.8 126 545-672 155-285 (339)
247 KOG2315 Predicted translation 98.6 1.2E-06 2.6E-11 96.6 16.7 118 554-678 269-396 (566)
248 PRK04792 tolB translocation pr 98.6 1.2E-06 2.6E-11 98.9 17.4 140 551-695 213-360 (448)
249 PF02239 Cytochrom_D1: Cytochr 98.6 6.5E-06 1.4E-10 90.6 22.4 165 508-695 8-182 (369)
250 KOG1064 RAVE (regulator of V-A 98.6 3E-07 6.6E-12 111.6 11.9 153 504-680 2218-2375(2439)
251 PF02239 Cytochrom_D1: Cytochr 98.6 1.5E-05 3.2E-10 87.8 24.2 154 507-680 49-211 (369)
252 KOG4497 Uncharacterized conser 98.5 3.2E-07 7E-12 95.2 9.8 131 560-695 13-144 (447)
253 KOG3914 WD repeat protein WDR4 98.5 5.9E-07 1.3E-11 95.7 11.6 85 550-636 146-231 (390)
254 KOG1409 Uncharacterized conser 98.5 7E-07 1.5E-11 93.4 11.6 83 545-627 187-270 (404)
255 KOG1240 Protein kinase contain 98.5 1.4E-06 3E-11 103.1 13.8 148 546-694 1039-1205(1431)
256 KOG4714 Nucleoporin [Nuclear s 98.4 6.2E-07 1.4E-11 90.7 7.8 149 505-672 100-255 (319)
257 KOG4532 WD40-like repeat conta 98.4 1.9E-05 4.1E-10 80.5 18.2 180 495-694 73-260 (344)
258 KOG1409 Uncharacterized conser 98.4 5.5E-06 1.2E-10 86.8 14.6 150 507-672 81-271 (404)
259 PF00400 WD40: WD domain, G-be 98.4 9.2E-07 2E-11 64.2 6.5 39 587-625 1-39 (39)
260 PF08513 LisH: LisH; InterPro 98.4 4.1E-07 8.9E-12 61.2 3.8 27 10-36 1-27 (27)
261 PF10282 Lactonase: Lactonase, 98.4 0.00019 4.1E-09 78.3 26.9 135 557-691 193-345 (345)
262 KOG1354 Serine/threonine prote 98.3 3.4E-06 7.4E-11 88.3 11.7 128 553-683 162-314 (433)
263 KOG4190 Uncharacterized conser 98.3 2E-06 4.4E-11 94.1 10.3 159 507-680 748-915 (1034)
264 KOG1334 WD40 repeat protein [G 98.3 1.6E-06 3.6E-11 94.1 9.6 145 548-694 225-446 (559)
265 KOG4190 Uncharacterized conser 98.3 1.3E-06 2.8E-11 95.6 8.7 143 547-691 727-884 (1034)
266 PF00400 WD40: WD domain, G-be 98.3 1.7E-06 3.8E-11 62.7 6.7 38 546-583 2-39 (39)
267 KOG0309 Conserved WD40 repeat- 98.3 1.5E-06 3.2E-11 98.1 8.0 125 549-673 108-234 (1081)
268 PF10282 Lactonase: Lactonase, 98.2 0.00041 8.9E-09 75.6 26.0 150 545-695 76-255 (345)
269 KOG1354 Serine/threonine prote 98.2 8.4E-06 1.8E-10 85.4 11.9 176 479-672 25-245 (433)
270 KOG0309 Conserved WD40 repeat- 98.2 2.1E-06 4.4E-11 97.0 6.7 166 506-689 127-305 (1081)
271 KOG4532 WD40-like repeat conta 98.2 7.8E-05 1.7E-09 76.1 17.3 123 558-680 161-291 (344)
272 COG4946 Uncharacterized protei 98.2 7E-05 1.5E-09 81.4 17.3 125 553-680 357-486 (668)
273 PRK04043 tolB translocation pr 98.1 0.00022 4.8E-09 79.9 21.6 134 554-695 231-378 (419)
274 KOG4714 Nucleoporin [Nuclear s 98.1 2.9E-06 6.3E-11 86.0 5.6 180 507-695 48-234 (319)
275 PF11768 DUF3312: Protein of u 98.1 0.00019 4.2E-09 80.5 20.4 109 559-671 209-329 (545)
276 PLN02919 haloacid dehalogenase 98.1 0.00021 4.6E-09 88.5 23.0 116 557-675 741-892 (1057)
277 KOG1064 RAVE (regulator of V-A 98.1 5.4E-06 1.2E-10 101.2 8.1 119 546-680 2283-2407(2439)
278 COG5170 CDC55 Serine/threonine 98.1 1.2E-05 2.5E-10 83.3 9.1 128 552-682 169-321 (460)
279 KOG2315 Predicted translation 98.1 0.00039 8.4E-09 77.3 20.7 129 559-695 221-365 (566)
280 KOG2066 Vacuolar assembly/sort 98.0 5.3E-05 1.2E-09 87.0 14.0 148 505-685 48-201 (846)
281 PRK04043 tolB translocation pr 98.0 0.00058 1.3E-08 76.5 21.7 132 557-695 189-329 (419)
282 COG4946 Uncharacterized protei 98.0 0.00018 4E-09 78.2 16.1 111 547-659 393-507 (668)
283 KOG2041 WD40 repeat protein [G 98.0 2.5E-05 5.4E-10 88.1 9.9 158 507-671 27-186 (1189)
284 KOG2695 WD40 repeat protein [G 98.0 2.9E-05 6.3E-10 81.6 9.6 132 502-649 260-401 (425)
285 KOG0882 Cyclophilin-related pe 98.0 7.8E-06 1.7E-10 88.2 5.3 159 505-680 19-240 (558)
286 KOG1645 RING-finger-containing 97.9 2.1E-05 4.6E-10 84.0 7.7 114 579-694 175-292 (463)
287 PF11768 DUF3312: Protein of u 97.9 0.00018 3.9E-09 80.8 14.9 74 553-628 257-330 (545)
288 KOG1912 WD40 repeat protein [G 97.9 6.7E-05 1.4E-09 85.6 11.3 133 558-694 18-165 (1062)
289 KOG4497 Uncharacterized conser 97.9 2.9E-05 6.3E-10 81.0 7.5 97 556-654 49-147 (447)
290 KOG1275 PAB-dependent poly(A) 97.9 0.00012 2.6E-09 85.0 12.9 140 507-669 188-340 (1118)
291 KOG2041 WD40 repeat protein [G 97.9 8.1E-05 1.8E-09 84.1 10.9 117 555-672 14-146 (1189)
292 PF15492 Nbas_N: Neuroblastoma 97.8 0.0023 4.9E-08 66.4 19.7 124 558-682 46-270 (282)
293 PF08450 SGL: SMP-30/Gluconola 97.8 0.002 4.2E-08 66.5 19.3 133 555-691 85-232 (246)
294 PLN02919 haloacid dehalogenase 97.8 0.0032 7E-08 78.3 24.3 119 558-678 685-840 (1057)
295 COG2706 3-carboxymuconate cycl 97.8 0.0028 6.1E-08 67.5 19.9 141 553-695 37-201 (346)
296 KOG1645 RING-finger-containing 97.7 8E-05 1.7E-09 79.7 7.4 120 548-671 186-315 (463)
297 KOG1832 HIV-1 Vpr-binding prot 97.7 2.3E-05 5E-10 90.2 3.2 130 544-678 1090-1221(1516)
298 COG2706 3-carboxymuconate cycl 97.7 0.0091 2E-07 63.7 22.3 114 559-672 92-222 (346)
299 PF04762 IKI3: IKI3 family; I 97.7 0.0027 5.9E-08 77.7 20.8 137 554-694 208-358 (928)
300 COG5170 CDC55 Serine/threonine 97.6 0.00044 9.4E-09 72.0 10.8 163 507-672 39-253 (460)
301 TIGR02658 TTQ_MADH_Hv methylam 97.6 0.0078 1.7E-07 65.7 20.8 121 562-685 200-345 (352)
302 PF07433 DUF1513: Protein of u 97.5 0.0026 5.6E-08 67.5 15.2 120 561-680 56-256 (305)
303 COG5354 Uncharacterized protei 97.4 0.003 6.5E-08 69.7 15.0 115 553-672 272-396 (561)
304 KOG4640 Anaphase-promoting com 97.4 0.00059 1.3E-08 76.9 9.7 94 556-650 21-115 (665)
305 KOG1275 PAB-dependent poly(A) 97.4 0.0019 4.1E-08 75.5 13.8 107 557-669 179-294 (1118)
306 KOG1912 WD40 repeat protein [G 97.4 0.0034 7.4E-08 72.2 15.3 124 546-670 46-185 (1062)
307 PF08450 SGL: SMP-30/Gluconola 97.4 0.078 1.7E-06 54.6 24.6 110 558-672 42-165 (246)
308 KOG2066 Vacuolar assembly/sort 97.3 0.007 1.5E-07 70.1 17.4 141 505-673 82-235 (846)
309 PF04762 IKI3: IKI3 family; I 97.3 0.014 3.1E-07 71.6 20.5 136 555-695 120-315 (928)
310 KOG3617 WD40 and TPR repeat-co 97.3 0.0019 4.1E-08 74.7 11.9 70 558-627 62-131 (1416)
311 smart00320 WD40 WD40 repeats. 97.3 0.00077 1.7E-08 45.8 5.8 39 587-625 2-40 (40)
312 KOG2314 Translation initiation 97.2 0.0018 3.9E-08 72.0 10.6 129 559-694 214-356 (698)
313 smart00320 WD40 WD40 repeats. 97.2 0.00083 1.8E-08 45.6 5.4 38 546-583 3-40 (40)
314 TIGR02658 TTQ_MADH_Hv methylam 97.2 0.0099 2.1E-07 64.9 16.0 102 577-681 27-146 (352)
315 PF13360 PQQ_2: PQQ-like domai 97.2 0.016 3.4E-07 58.8 16.4 114 566-683 35-152 (238)
316 KOG1832 HIV-1 Vpr-binding prot 97.2 0.00016 3.5E-09 83.5 1.8 152 502-682 1109-1266(1516)
317 KOG2114 Vacuolar assembly/sort 97.1 0.017 3.7E-07 67.5 17.1 166 507-694 36-224 (933)
318 KOG1008 Uncharacterized conser 97.1 0.00011 2.5E-09 82.5 -0.3 168 507-695 71-254 (783)
319 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.016 3.6E-07 52.4 13.5 102 558-667 2-110 (111)
320 KOG3621 WD40 repeat-containing 97.1 0.0044 9.6E-08 70.9 12.1 135 556-691 34-178 (726)
321 KOG4640 Anaphase-promoting com 97.1 0.0022 4.9E-08 72.4 9.6 92 597-691 20-113 (665)
322 KOG1920 IkappaB kinase complex 97.0 0.016 3.5E-07 70.0 16.7 113 559-673 199-324 (1265)
323 TIGR03300 assembly_YfgL outer 97.0 0.012 2.6E-07 64.7 14.8 111 567-685 241-352 (377)
324 KOG2114 Vacuolar assembly/sort 97.0 0.046 1E-06 64.1 19.6 130 554-685 124-258 (933)
325 PF13360 PQQ_2: PQQ-like domai 97.0 0.14 3E-06 51.9 21.3 106 566-678 121-237 (238)
326 smart00667 LisH Lissencephaly 97.0 0.0012 2.6E-08 46.1 4.3 31 9-39 3-33 (34)
327 PF07433 DUF1513: Protein of u 96.9 0.048 1.1E-06 58.0 17.6 136 559-695 8-173 (305)
328 TIGR03300 assembly_YfgL outer 96.9 0.053 1.2E-06 59.5 18.4 146 506-678 65-215 (377)
329 PF08553 VID27: VID27 cytoplas 96.8 0.016 3.4E-07 69.1 13.8 99 568-670 543-646 (794)
330 COG5354 Uncharacterized protei 96.6 0.0079 1.7E-07 66.5 9.1 111 554-670 31-159 (561)
331 KOG2314 Translation initiation 96.5 0.07 1.5E-06 59.8 15.9 159 533-694 283-455 (698)
332 KOG4649 PQQ (pyrrolo-quinoline 96.5 0.064 1.4E-06 55.2 14.2 109 567-680 23-132 (354)
333 PRK02888 nitrous-oxide reducta 96.5 0.044 9.5E-07 63.4 14.5 64 608-674 287-354 (635)
334 PF02897 Peptidase_S9_N: Proly 96.5 0.24 5.3E-06 55.1 20.4 115 558-673 126-262 (414)
335 KOG0882 Cyclophilin-related pe 96.4 0.0055 1.2E-07 66.8 6.1 139 553-694 7-154 (558)
336 COG0823 TolB Periplasmic compo 96.4 0.022 4.9E-07 63.9 11.1 116 553-671 190-312 (425)
337 KOG2395 Protein involved in va 96.3 0.034 7.4E-07 62.1 12.0 116 551-671 372-500 (644)
338 KOG3617 WD40 and TPR repeat-co 96.3 0.0089 1.9E-07 69.4 7.7 110 559-672 19-132 (1416)
339 PF08596 Lgl_C: Lethal giant l 96.3 0.74 1.6E-05 51.3 22.7 135 544-680 75-252 (395)
340 COG3386 Gluconolactonase [Carb 96.3 0.08 1.7E-06 56.9 14.2 134 557-692 112-263 (307)
341 PF03178 CPSF_A: CPSF A subuni 96.2 0.33 7.2E-06 52.2 19.1 112 554-671 87-202 (321)
342 COG0823 TolB Periplasmic compo 96.2 0.1 2.3E-06 58.6 15.0 164 507-691 251-421 (425)
343 KOG4649 PQQ (pyrrolo-quinoline 96.1 0.2 4.4E-06 51.7 15.3 84 566-650 62-145 (354)
344 PF15492 Nbas_N: Neuroblastoma 96.1 0.43 9.2E-06 49.9 17.8 131 561-695 3-158 (282)
345 PF06977 SdiA-regulated: SdiA- 96.1 1.4 3.1E-05 45.9 21.9 123 557-680 66-209 (248)
346 PRK02888 nitrous-oxide reducta 96.1 0.11 2.3E-06 60.4 14.5 103 565-672 286-405 (635)
347 KOG3621 WD40 repeat-containing 95.9 0.033 7.2E-07 64.0 9.4 105 506-628 45-155 (726)
348 PF12234 Rav1p_C: RAVE protein 95.9 0.3 6.4E-06 57.1 17.2 124 544-670 18-155 (631)
349 PF04053 Coatomer_WDAD: Coatom 95.8 0.094 2E-06 59.2 12.8 124 554-695 31-155 (443)
350 KOG1920 IkappaB kinase complex 95.8 0.44 9.5E-06 58.2 18.6 135 555-694 109-299 (1265)
351 KOG1008 Uncharacterized conser 95.8 0.0038 8.2E-08 70.7 1.2 113 557-671 156-275 (783)
352 KOG2079 Vacuolar assembly/sort 95.5 0.042 9E-07 65.8 8.7 100 567-670 99-202 (1206)
353 COG3386 Gluconolactonase [Carb 95.5 1.1 2.3E-05 48.4 18.7 110 551-662 158-277 (307)
354 PF08596 Lgl_C: Lethal giant l 95.5 0.39 8.4E-06 53.5 15.8 133 557-690 3-199 (395)
355 PF08553 VID27: VID27 cytoplas 95.4 0.14 2.9E-06 61.4 12.7 126 566-694 492-628 (794)
356 KOG2444 WD40 repeat protein [G 95.4 0.048 1.1E-06 55.2 7.7 105 506-628 70-178 (238)
357 COG3391 Uncharacterized conser 95.4 2 4.4E-05 47.6 21.2 133 559-691 163-306 (381)
358 PRK11138 outer membrane biogen 95.4 0.26 5.7E-06 54.6 14.2 108 567-682 256-364 (394)
359 PRK13616 lipoprotein LpqB; Pro 95.3 0.27 6E-06 57.6 14.6 126 557-691 351-504 (591)
360 PRK13616 lipoprotein LpqB; Pro 95.3 0.58 1.3E-05 54.9 17.2 129 558-691 399-548 (591)
361 COG3391 Uncharacterized conser 95.2 0.67 1.5E-05 51.4 16.9 116 558-676 76-195 (381)
362 PF15390 DUF4613: Domain of un 95.2 0.33 7.2E-06 55.3 14.1 117 555-671 56-186 (671)
363 PF00930 DPPIV_N: Dipeptidyl p 95.2 0.051 1.1E-06 59.4 7.9 105 564-670 1-130 (353)
364 PF06977 SdiA-regulated: SdiA- 95.1 0.91 2E-05 47.3 16.3 144 549-695 15-181 (248)
365 PF00930 DPPIV_N: Dipeptidyl p 95.1 0.89 1.9E-05 49.7 17.1 141 554-695 182-338 (353)
366 KOG4499 Ca2+-binding protein R 95.1 0.44 9.5E-06 48.7 13.0 135 557-694 110-264 (310)
367 KOG2079 Vacuolar assembly/sort 95.0 0.041 8.8E-07 65.9 6.4 82 609-691 99-180 (1206)
368 COG3490 Uncharacterized protei 94.7 0.46 1E-05 49.8 12.5 55 562-616 120-180 (366)
369 PRK11138 outer membrane biogen 94.7 0.32 7E-06 53.9 12.4 109 567-680 69-187 (394)
370 TIGR02604 Piru_Ver_Nterm putat 94.7 1.2 2.6E-05 49.1 16.8 135 557-695 15-194 (367)
371 KOG2444 WD40 repeat protein [G 94.7 0.097 2.1E-06 53.1 7.3 104 567-672 70-178 (238)
372 KOG3630 Nuclear pore complex, 94.6 0.31 6.6E-06 59.1 12.1 135 557-694 102-254 (1405)
373 KOG2395 Protein involved in va 94.5 0.23 5.1E-06 55.7 10.4 127 564-691 342-479 (644)
374 PF12894 Apc4_WD40: Anaphase-p 94.2 0.11 2.4E-06 39.8 5.2 34 555-589 11-44 (47)
375 PF00780 CNH: CNH domain; Int 94.2 1.1 2.4E-05 46.7 14.6 121 565-691 5-146 (275)
376 PF04053 Coatomer_WDAD: Coatom 94.1 1.1 2.3E-05 50.8 15.1 103 558-672 71-174 (443)
377 KOG1916 Nuclear protein, conta 93.8 0.026 5.6E-07 66.3 1.3 129 550-683 127-282 (1283)
378 PF10647 Gmad1: Lipoprotein Lp 93.7 2.6 5.6E-05 44.0 16.1 136 557-694 25-175 (253)
379 PF06433 Me-amine-dh_H: Methyl 93.7 6.5 0.00014 42.7 19.1 119 561-681 189-330 (342)
380 PF14783 BBS2_Mid: Ciliary BBS 93.6 3.1 6.7E-05 37.9 14.1 90 507-622 16-109 (111)
381 KOG1916 Nuclear protein, conta 93.5 0.13 2.8E-06 60.7 6.3 119 556-676 181-328 (1283)
382 PF05096 Glu_cyclase_2: Glutam 93.2 5.6 0.00012 41.8 17.2 130 546-681 34-167 (264)
383 cd00216 PQQ_DH Dehydrogenases 93.1 3.1 6.8E-05 47.7 16.8 111 568-680 111-273 (488)
384 PHA02713 hypothetical protein; 93.1 0.87 1.9E-05 53.2 12.4 74 608-684 463-546 (557)
385 PF03178 CPSF_A: CPSF A subuni 93.0 6.1 0.00013 42.4 18.2 120 567-692 42-181 (321)
386 PF10168 Nup88: Nuclear pore c 92.9 1.5 3.2E-05 52.6 14.0 78 557-635 86-187 (717)
387 PF14870 PSII_BNR: Photosynthe 92.8 2.2 4.8E-05 45.8 14.1 135 553-694 142-286 (302)
388 PF14655 RAB3GAP2_N: Rab3 GTPa 92.5 1.4 3E-05 49.3 12.4 94 590-684 300-411 (415)
389 PRK10350 hypothetical protein; 92.3 0.84 1.8E-05 41.8 8.4 30 68-97 21-51 (145)
390 PF08728 CRT10: CRT10; InterP 92.3 4.9 0.00011 47.8 17.0 112 558-670 103-245 (717)
391 PF12894 Apc4_WD40: Anaphase-p 92.2 0.39 8.6E-06 36.8 5.4 31 597-627 11-41 (47)
392 PRK10115 protease 2; Provision 91.8 7.2 0.00016 46.8 18.3 111 558-670 129-254 (686)
393 PF04841 Vps16_N: Vps16, N-ter 91.8 7.9 0.00017 43.4 17.5 81 605-691 186-267 (410)
394 PF00780 CNH: CNH domain; Int 91.5 16 0.00036 37.8 18.8 116 558-679 38-173 (275)
395 PF11498 Activator_LAG-3: Tran 91.5 0.056 1.2E-06 57.3 0.0 7 48-54 275-281 (468)
396 COG3204 Uncharacterized protei 91.3 5.1 0.00011 42.5 14.1 120 551-671 81-210 (316)
397 PF14655 RAB3GAP2_N: Rab3 GTPa 91.1 2.6 5.6E-05 47.3 12.6 96 541-637 293-407 (415)
398 cd00216 PQQ_DH Dehydrogenases 90.4 2.3 5.1E-05 48.7 11.9 110 567-681 61-193 (488)
399 KOG2377 Uncharacterized conser 90.2 6.1 0.00013 44.1 13.9 117 554-672 65-186 (657)
400 PF10313 DUF2415: Uncharacteri 90.2 0.97 2.1E-05 33.9 5.5 31 556-586 1-34 (43)
401 PF04841 Vps16_N: Vps16, N-ter 90.1 17 0.00037 40.8 18.2 32 556-588 81-112 (410)
402 TIGR02276 beta_rpt_yvtn 40-res 89.8 1.5 3.2E-05 31.8 6.4 41 650-691 1-41 (42)
403 PF10313 DUF2415: Uncharacteri 89.7 0.88 1.9E-05 34.2 5.0 32 641-672 1-34 (43)
404 PF10168 Nup88: Nuclear pore c 89.5 7.4 0.00016 46.8 15.3 74 597-672 84-180 (717)
405 TIGR03074 PQQ_membr_DH membran 89.5 11 0.00025 45.5 17.1 109 567-680 194-353 (764)
406 KOG3630 Nuclear pore complex, 89.5 1.6 3.5E-05 53.2 9.6 104 556-661 156-264 (1405)
407 COG5167 VID27 Protein involved 89.5 6.3 0.00014 44.6 13.5 118 548-671 503-632 (776)
408 PF07569 Hira: TUP1-like enhan 89.5 2.3 5E-05 43.5 9.8 73 606-680 19-104 (219)
409 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.4 8.6 0.00019 44.6 15.5 61 619-682 441-501 (527)
410 TIGR03074 PQQ_membr_DH membran 89.3 23 0.0005 43.0 19.4 104 576-680 335-486 (764)
411 PF07569 Hira: TUP1-like enhan 89.2 2.1 4.5E-05 43.8 9.2 66 563-629 18-97 (219)
412 PF10214 Rrn6: RNA polymerase 89.1 24 0.00052 43.0 19.7 120 553-675 77-236 (765)
413 KOG4460 Nuclear pore complex, 89.0 3.8 8.2E-05 46.4 11.4 79 598-676 104-203 (741)
414 TIGR02604 Piru_Ver_Nterm putat 88.9 12 0.00026 41.1 15.7 98 556-658 72-200 (367)
415 PF10647 Gmad1: Lipoprotein Lp 88.6 34 0.00073 35.7 19.0 111 557-667 67-192 (253)
416 PF14761 HPS3_N: Hermansky-Pud 88.3 9.5 0.00021 38.8 12.9 102 568-672 29-164 (215)
417 KOG4499 Ca2+-binding protein R 88.3 6.6 0.00014 40.4 11.7 102 559-661 161-275 (310)
418 TIGR03606 non_repeat_PQQ dehyd 88.2 45 0.00097 38.0 19.6 55 555-609 29-90 (454)
419 PF14583 Pectate_lyase22: Olig 88.0 12 0.00025 41.5 14.4 130 561-694 41-197 (386)
420 PF14870 PSII_BNR: Photosynthe 88.0 40 0.00087 36.3 18.3 106 559-669 107-213 (302)
421 PF11498 Activator_LAG-3: Tran 87.8 0.16 3.5E-06 53.9 0.0 7 128-134 378-384 (468)
422 PF10395 Utp8: Utp8 family; I 87.7 43 0.00092 39.8 19.4 124 555-680 129-268 (670)
423 PF05694 SBP56: 56kDa selenium 87.4 56 0.0012 36.8 20.8 126 566-693 86-254 (461)
424 PF05694 SBP56: 56kDa selenium 87.0 4.7 0.0001 45.1 10.6 115 558-672 183-343 (461)
425 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.9 7.1 0.00015 45.3 12.8 109 567-680 69-198 (527)
426 PF12657 TFIIIC_delta: Transcr 86.6 3 6.5E-05 40.9 8.2 31 641-671 86-121 (173)
427 PRK13684 Ycf48-like protein; P 86.3 26 0.00056 38.1 16.1 113 555-674 172-290 (334)
428 PF12234 Rav1p_C: RAVE protein 86.2 6.8 0.00015 46.1 12.0 72 553-626 70-155 (631)
429 PF15390 DUF4613: Domain of un 86.1 20 0.00044 41.5 15.2 69 559-628 116-187 (671)
430 TIGR03118 PEPCTERM_chp_1 conse 85.8 20 0.00044 38.4 14.1 114 558-671 25-170 (336)
431 PF12768 Rax2: Cortical protei 85.6 11 0.00024 40.1 12.4 114 576-691 15-144 (281)
432 COG3204 Uncharacterized protei 84.7 60 0.0013 34.7 16.9 122 558-680 131-271 (316)
433 PF11715 Nup160: Nucleoporin N 84.6 4.4 9.6E-05 47.0 9.7 75 607-681 156-258 (547)
434 COG3490 Uncharacterized protei 84.2 19 0.00041 38.2 12.8 101 560-660 72-181 (366)
435 PF06433 Me-amine-dh_H: Methyl 84.2 19 0.0004 39.3 13.3 113 559-676 39-171 (342)
436 PHA03098 kelch-like protein; P 83.5 21 0.00047 41.1 14.8 105 566-675 389-515 (534)
437 PF07995 GSDH: Glucose / Sorbo 83.4 21 0.00045 38.8 13.8 100 558-660 4-132 (331)
438 PF14583 Pectate_lyase22: Olig 83.3 59 0.0013 36.1 16.9 154 506-679 48-231 (386)
439 PHA03098 kelch-like protein; P 83.1 19 0.0004 41.6 14.1 105 566-675 342-468 (534)
440 KOG2247 WD40 repeat-containing 82.7 0.18 3.9E-06 56.1 -2.6 132 558-694 37-169 (615)
441 PLN00033 photosystem II stabil 82.7 53 0.0012 36.8 16.7 129 558-691 241-378 (398)
442 PF10214 Rrn6: RNA polymerase 82.6 1.3E+02 0.0027 36.8 21.3 125 546-672 133-277 (765)
443 KOG4441 Proteins containing BT 81.9 23 0.0005 41.6 14.2 111 559-674 326-455 (571)
444 PF14781 BBS2_N: Ciliary BBSom 81.9 47 0.001 31.4 13.6 112 560-676 3-130 (136)
445 KOG4460 Nuclear pore complex, 81.5 12 0.00025 42.7 10.7 74 557-630 105-201 (741)
446 KOG1897 Damage-specific DNA bi 80.8 69 0.0015 39.4 17.2 170 505-694 547-724 (1096)
447 PHA02713 hypothetical protein; 80.6 28 0.00061 40.7 14.3 102 566-672 351-489 (557)
448 PF07676 PD40: WD40-like Beta 80.1 6.5 0.00014 28.1 5.8 32 637-668 5-38 (39)
449 PRK13684 Ycf48-like protein; P 79.4 76 0.0016 34.5 16.4 110 555-670 214-330 (334)
450 COG1520 FOG: WD40-like repeat 79.0 25 0.00053 38.6 12.6 110 566-680 68-180 (370)
451 PF11715 Nup160: Nucleoporin N 78.9 13 0.00029 43.1 11.0 71 565-636 156-256 (547)
452 PF02897 Peptidase_S9_N: Proly 78.0 1.2E+02 0.0025 33.6 22.4 122 558-680 229-366 (414)
453 KOG1897 Damage-specific DNA bi 77.7 76 0.0016 39.0 16.3 111 556-671 830-942 (1096)
454 KOG4441 Proteins containing BT 77.4 31 0.00068 40.5 13.4 106 566-676 427-551 (571)
455 PRK10350 hypothetical protein; 77.3 18 0.00039 33.4 8.7 12 57-68 14-25 (145)
456 PHA02790 Kelch-like protein; P 76.6 56 0.0012 37.4 15.0 102 566-675 362-474 (480)
457 PRK10115 protease 2; Provision 76.5 27 0.00059 41.9 12.8 73 598-673 127-209 (686)
458 PF14781 BBS2_N: Ciliary BBSom 75.7 32 0.00069 32.5 10.2 87 602-691 3-100 (136)
459 TIGR03548 mutarot_permut cycli 75.0 55 0.0012 35.1 13.7 107 566-675 72-198 (323)
460 TIGR02171 Fb_sc_TIGR02171 Fibr 74.4 22 0.00047 43.4 11.0 93 567-659 319-417 (912)
461 PF05935 Arylsulfotrans: Aryls 74.0 73 0.0016 36.5 15.0 118 561-683 153-313 (477)
462 PF08728 CRT10: CRT10; InterP 73.4 12 0.00026 44.7 8.4 115 505-626 113-245 (717)
463 KOG2377 Uncharacterized conser 72.7 28 0.0006 39.2 10.3 129 559-691 26-161 (657)
464 TIGR02276 beta_rpt_yvtn 40-res 71.8 17 0.00037 25.9 6.2 31 565-595 1-32 (42)
465 PF13449 Phytase-like: Esteras 71.3 79 0.0017 34.2 13.8 112 558-670 87-248 (326)
466 PF07250 Glyoxal_oxid_N: Glyox 71.3 29 0.00063 36.1 9.9 118 560-680 71-206 (243)
467 COG4257 Vgb Streptogramin lyas 70.5 50 0.0011 35.0 11.1 113 558-672 64-187 (353)
468 TIGR03032 conserved hypothetic 70.1 75 0.0016 34.4 12.7 82 566-651 212-315 (335)
469 KOG2659 LisH motif-containing 69.7 4.1 9E-05 41.6 3.2 31 11-41 28-58 (228)
470 TIGR03548 mutarot_permut cycli 69.0 1.6E+02 0.0035 31.4 15.6 65 566-631 123-198 (323)
471 KOG1900 Nuclear pore complex, 68.7 57 0.0012 41.2 12.8 73 596-672 177-273 (1311)
472 PF10956 DUF2756: Protein of u 68.7 24 0.00052 31.3 7.1 20 70-89 23-43 (104)
473 PF05096 Glu_cyclase_2: Glutam 68.6 1.6E+02 0.0035 31.1 19.4 115 574-695 107-241 (264)
474 KOG0396 Uncharacterized conser 67.9 4.8 0.0001 43.7 3.3 33 8-40 114-146 (389)
475 smart00036 CNH Domain found in 67.4 1.1E+02 0.0023 32.9 13.7 59 566-627 12-73 (302)
476 COG5276 Uncharacterized conser 66.3 1.9E+02 0.0042 31.1 16.7 111 556-673 87-201 (370)
477 PF14269 Arylsulfotran_2: Aryl 65.6 1.5E+02 0.0032 31.8 14.2 69 558-626 146-219 (299)
478 PF10477 EIF4E-T: Nucleocytopl 65.0 5.3 0.00012 46.8 3.3 15 143-157 562-576 (578)
479 PLN00033 photosystem II stabil 64.6 75 0.0016 35.6 12.1 109 555-668 280-396 (398)
480 TIGR03032 conserved hypothetic 64.6 1.5E+02 0.0032 32.2 13.5 102 581-691 189-312 (335)
481 PLN02153 epithiospecifier prot 64.1 2.1E+02 0.0046 30.8 16.5 105 566-675 137-288 (341)
482 PF14727 PHTB1_N: PTHB1 N-term 64.0 2.5E+02 0.0055 31.7 19.9 147 505-670 36-203 (418)
483 COG5167 VID27 Protein involved 63.0 39 0.00085 38.5 9.2 106 563-671 475-591 (776)
484 COG1520 FOG: WD40-like repeat 62.2 2.4E+02 0.0052 30.8 16.1 110 566-680 111-226 (370)
485 PHA02790 Kelch-like protein; P 58.6 72 0.0016 36.5 11.0 105 566-675 271-388 (480)
486 KOG2247 WD40 repeat-containing 58.5 1.7 3.7E-05 48.7 -2.1 106 555-664 74-181 (615)
487 PF07995 GSDH: Glucose / Sorbo 57.5 1.3E+02 0.0028 32.7 12.2 59 600-660 4-71 (331)
488 KOG2280 Vacuolar assembly/sort 57.1 1.4E+02 0.003 35.9 12.6 39 641-680 217-255 (829)
489 PF07676 PD40: WD40-like Beta 57.1 41 0.00089 23.8 5.7 30 553-582 6-38 (39)
490 COG5276 Uncharacterized conser 55.9 2.9E+02 0.0064 29.8 19.7 144 507-674 97-244 (370)
491 PF12768 Rax2: Cortical protei 55.2 2.7E+02 0.0058 29.7 13.7 72 555-627 36-123 (281)
492 PF02333 Phytase: Phytase; In 54.4 3.5E+02 0.0076 30.2 20.5 122 558-680 158-300 (381)
493 PF01731 Arylesterase: Arylest 53.4 53 0.0012 28.5 6.7 50 619-672 36-85 (86)
494 KOG1898 Splicing factor 3b, su 53.4 3.9E+02 0.0085 33.5 15.8 104 562-670 940-1047(1205)
495 PF07250 Glyoxal_oxid_N: Glyox 52.2 35 0.00075 35.6 6.3 91 580-670 49-147 (243)
496 COG5290 IkappaB kinase complex 52.0 24 0.00052 42.1 5.5 92 598-694 247-346 (1243)
497 PLN02153 epithiospecifier prot 51.7 1.8E+02 0.004 31.3 12.3 66 566-631 85-171 (341)
498 KOG4369 RTK signaling protein 51.1 17 0.00036 45.0 4.2 50 90-139 1856-1907(2131)
499 PF13449 Phytase-like: Esteras 50.0 3.6E+02 0.0078 29.1 16.5 137 556-695 20-225 (326)
500 KOG1896 mRNA cleavage and poly 48.7 6.8E+02 0.015 32.0 16.9 179 503-691 1043-1241(1366)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1e-26 Score=243.66 Aligned_cols=203 Identities=25% Similarity=0.329 Sum_probs=173.9
Q ss_pred ccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCC--------------------------C
Q 005473 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA--------------------------D 528 (695)
Q Consensus 475 ~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~--------------------------~ 528 (695)
...+...+..+.|+|.. .+.-+++|+.|++|++|...... .
T Consensus 213 l~gH~~~v~~~~fhP~~-------------~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Ta 279 (459)
T KOG0272|consen 213 LRGHTSRVGAAVFHPVD-------------SDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTA 279 (459)
T ss_pred EeccccceeeEEEccCC-------------CccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeec
Confidence 34455566666677642 12467888999999999765532 1
Q ss_pred CCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCC
Q 005473 529 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 608 (695)
Q Consensus 529 ~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spd 608 (695)
..|...++||..+. .++....||...|.+|+|.+||.+++||+.|..-+|||++++.++..+.+|...|.+|.|+|+
T Consensus 280 sfD~tWRlWD~~tk---~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN 356 (459)
T KOG0272|consen 280 SFDSTWRLWDLETK---SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPN 356 (459)
T ss_pred ccccchhhcccccc---hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCC
Confidence 22344466665554 556667899999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEE
Q 005473 609 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVS 688 (695)
Q Consensus 609 g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~Vts 688 (695)
|-.|||||.|++++|||++.... +.++.+|..-|+.|+|.|....+|++|+.|++++||..++..++.++-||.+.|.+
T Consensus 357 Gy~lATgs~Dnt~kVWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s 435 (459)
T KOG0272|consen 357 GYHLATGSSDNTCKVWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVIS 435 (459)
T ss_pred ceEEeecCCCCcEEEeeeccccc-ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEE
Confidence 99999999999999999997664 89999999999999999977779999999999999999999999999999999999
Q ss_pred EEEeCCC
Q 005473 689 VRVVQPR 695 (695)
Q Consensus 689 Vaf~sPd 695 (695)
+++ +||
T Consensus 436 ~Di-s~d 441 (459)
T KOG0272|consen 436 LDI-SPD 441 (459)
T ss_pred EEe-ccC
Confidence 999 875
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=9.8e-27 Score=243.85 Aligned_cols=183 Identities=29% Similarity=0.396 Sum_probs=167.1
Q ss_pred cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (695)
Q Consensus 476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~ 555 (695)
+.+.++++...|+.++ ..+++||++|.+++|.++.. ..+.++++|+
T Consensus 172 ~gd~rPis~~~fS~ds---------------~~laT~swsG~~kvW~~~~~-------------------~~~~~l~gH~ 217 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDS---------------KHLATGSWSGLVKVWSVPQC-------------------NLLQTLRGHT 217 (459)
T ss_pred ccCCCcceeeEeecCC---------------CeEEEeecCCceeEeecCCc-------------------ceeEEEeccc
Confidence 3455677777777766 67899999999999955432 4678899999
Q ss_pred CCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 005473 556 SKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (695)
Q Consensus 556 ~~V~~v~fspd--g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l 633 (695)
+.|.++.|+|. +..||||+.||+|++|++.+..++..+++|...|..++|+|+|++|+|+|+|.+-++||++++.. +
T Consensus 218 ~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-l 296 (459)
T KOG0272|consen 218 SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-L 296 (459)
T ss_pred cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-h
Confidence 99999999997 56899999999999999999999999999999999999999999999999999999999999776 6
Q ss_pred EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 634 ~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
....||...|.+++|+|||. ++++|+.|..-||||+++|.|+..+.+|...|.+|+| +|+
T Consensus 297 L~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~f-sPN 356 (459)
T KOG0272|consen 297 LLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAF-SPN 356 (459)
T ss_pred HhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeE-CCC
Confidence 67789999999999999998 8899999999999999999999999999999999999 996
No 3
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=3.7e-26 Score=255.08 Aligned_cols=183 Identities=29% Similarity=0.431 Sum_probs=166.4
Q ss_pred cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (695)
Q Consensus 476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~ 555 (695)
..++.++.-..|.|+. +|+.++|.|++||+|.. .++.++..++||.
T Consensus 448 ~GH~GPVyg~sFsPd~---------------rfLlScSED~svRLWsl-------------------~t~s~~V~y~GH~ 493 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDR---------------RFLLSCSEDSSVRLWSL-------------------DTWSCLVIYKGHL 493 (707)
T ss_pred ecCCCceeeeeecccc---------------cceeeccCCcceeeeec-------------------ccceeEEEecCCC
Confidence 3444555555555544 89999999999999943 3446788889999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (695)
Q Consensus 556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~ 635 (695)
.+|.++.|+|-|-|+|||++|++.++|..+...+++.+.+|-+.|.|+.|+|+..+++|||.|++||+||+.++.. ++.
T Consensus 494 ~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-VRi 572 (707)
T KOG0263|consen 494 APVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-VRI 572 (707)
T ss_pred cceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-EEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999774 999
Q ss_pred EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 636 ~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
|.||.+.|.+|+|+|+|. +|++|+.||.|.|||+.+++.+..+++|++.|.+|.| +.|
T Consensus 573 F~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsF-S~d 630 (707)
T KOG0263|consen 573 FTGHKGPVTALAFSPCGR-YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSF-SRD 630 (707)
T ss_pred ecCCCCceEEEEEcCCCc-eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEE-ecC
Confidence 999999999999999998 7779999999999999999999999999999999999 764
No 4
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=3.4e-25 Score=222.25 Aligned_cols=201 Identities=24% Similarity=0.387 Sum_probs=166.7
Q ss_pred cccccCCCCCceEEEEecCCC-ccccccCCccCCCC------------cEEEEeeCCCcEEEEeCCCCCCCCCccccccc
Q 005473 472 PTLQHNGASSKSLLMFGSDGM-GSLTSAPNQLTDMD------------RFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (695)
Q Consensus 472 ~~l~~s~s~~~s~l~~~~dg~-~~la~s~~~l~~~~------------~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d 538 (695)
+.+..+++++++++.|..... ..+..+...+.+|+ +|..++++|+++++|+...+
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g------------ 95 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG------------ 95 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC------------
Confidence 345667888999999987655 33444444444443 56778999999999966543
Q ss_pred cCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-cCCCeEEEEEcCC--CCEEEEE
Q 005473 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPS--LSRLATS 615 (695)
Q Consensus 539 ~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~-H~~~V~~v~~spd--g~~LaTg 615 (695)
.....+.+|..-|.+++|++|.+.|++|+.|++|++||+.+.......+. |.+.|.|++|+|+ ..+|+++
T Consensus 96 -------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~ 168 (315)
T KOG0279|consen 96 -------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSA 168 (315)
T ss_pred -------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEc
Confidence 34567889999999999999999999999999999999976444433332 3899999999997 6789999
Q ss_pred eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 616 s~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+.|++|++||+++-+. ...+.||.+.|+.+.++|||. ++++|+.||.+.+||++.++++..+ .|...|.+++| +|+
T Consensus 169 s~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~f-spn 244 (315)
T KOG0279|consen 169 SWDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCF-SPN 244 (315)
T ss_pred cCCceEEEEccCCcch-hhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEe-cCC
Confidence 9999999999998664 788999999999999999998 8889999999999999999998887 57789999999 996
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2e-25 Score=231.32 Aligned_cols=177 Identities=26% Similarity=0.407 Sum_probs=159.1
Q ss_pred CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (695)
Q Consensus 478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~ 557 (695)
+..++-++.|+|++ ..+++|+-|.++++|+... .++..+.++|...
T Consensus 114 H~e~Vl~~~fsp~g---------------~~l~tGsGD~TvR~WD~~T-------------------eTp~~t~KgH~~W 159 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTG---------------SRLVTGSGDTTVRLWDLDT-------------------ETPLFTCKGHKNW 159 (480)
T ss_pred CCCcEEEEEecCCC---------------ceEEecCCCceEEeeccCC-------------------CCcceeecCCccE
Confidence 45677888888876 6789999999999996533 2567888999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE-EEecccCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCCe
Q 005473 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDY 631 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~-~~l~~H~~~V~~v~~sp-----dg~~LaTgs~DgtIrvWDl~t~~~ 631 (695)
|.||+|+|||+.||+|+.||.|++||.++++++ +.+.+|+..|++++|.| ..++|++++.||.|+|||+..+.
T Consensus 160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~- 238 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT- 238 (480)
T ss_pred EEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-
Confidence 999999999999999999999999999888765 67899999999999976 56799999999999999999754
Q ss_pred eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 632 ~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf 691 (695)
|+..+.||+..|+||.|--+ .++++|+.|++|++|+...|.+.+.+++|..+|+.|+.
T Consensus 239 ~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lal 296 (480)
T KOG0271|consen 239 CVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLAL 296 (480)
T ss_pred EEEEeccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHHHhhcccchheeeeec
Confidence 69999999999999999844 48999999999999999999999999999999999987
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.7e-25 Score=229.28 Aligned_cols=146 Identities=27% Similarity=0.461 Sum_probs=138.2
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD 625 (695)
++-..+.||.++|.|+.|+|+|+.|++|+.|.+||+||+.+..+..+.++|...|.||+|+|||..||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 55677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecC----CCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473 626 TENPDYSLRTFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 626 l~t~~~~l~~~~gh~~~V~sl~fspd----g~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf 691 (695)
.+++....+.+.+|..+|++++|.|- +..+|++++.||.|+|||+..+.|+..+.+|+.+|+||+|
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrw 255 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRW 255 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEE
Confidence 99998877999999999999999873 2347889999999999999999999999999999999998
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.92 E-value=2.2e-24 Score=241.01 Aligned_cols=189 Identities=23% Similarity=0.442 Sum_probs=162.7
Q ss_pred ccCCCCcEEEEeeCCCcEEEEeCCCCC--------C-------CCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC
Q 005473 501 QLTDMDRFVDDGSLDDNVESFLSPDDA--------D-------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP 565 (695)
Q Consensus 501 ~l~~~~~~lasgS~D~~V~lw~~~~~~--------~-------~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp 565 (695)
.+.+...++|+|-.|..|++|...... . ..+......+.. .....+++.+|.++|+.+.|+|
T Consensus 385 ~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~---~~~~~~~L~GH~GPVyg~sFsP 461 (707)
T KOG0263|consen 385 EFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDD---SSGTSRTLYGHSGPVYGCSFSP 461 (707)
T ss_pred eecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhcccc---CCceeEEeecCCCceeeeeecc
Confidence 345555799999999999999775311 0 011111222222 2234456899999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEE
Q 005473 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (695)
Q Consensus 566 dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~s 645 (695)
+.++|++++.|++||+|.+.+..++..+.||..+|+++.|+|-|-+|||+|.|++.++|..+... +++.+.||-+.|.|
T Consensus 462 d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-PlRifaghlsDV~c 540 (707)
T KOG0263|consen 462 DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-PLRIFAGHLSDVDC 540 (707)
T ss_pred cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-chhhhcccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999744 69999999999999
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 646 l~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+.|||+.. ++++|+.|.+||+||+.+|.+++.|.||+++|++|+| +|+
T Consensus 541 v~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~-Sp~ 588 (707)
T KOG0263|consen 541 VSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF-SPC 588 (707)
T ss_pred EEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE-cCC
Confidence 99999977 7789999999999999999999999999999999999 985
No 8
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=1.3e-23 Score=232.68 Aligned_cols=209 Identities=25% Similarity=0.370 Sum_probs=173.5
Q ss_pred cccCCCCCceEEEEecCCCccccccCCc-------------cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccC
Q 005473 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQ-------------LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (695)
Q Consensus 474 l~~s~s~~~s~l~~~~dg~~~la~s~~~-------------l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~ 540 (695)
+..+++.+++.+.|..+...+....... -.....|++++|.|.++++|..+...+..
T Consensus 379 llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~---------- 448 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA---------- 448 (775)
T ss_pred EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc----------
Confidence 6677899999999966332111110000 13344799999999999999776632211
Q ss_pred CCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCe
Q 005473 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (695)
Q Consensus 541 ~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dgt 620 (695)
....+..-.+...|...|+||+++|+.++||||+.|++++||+++......++.||+..|+||.|+|....++|+|.|++
T Consensus 449 ~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T 528 (775)
T KOG0319|consen 449 FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT 528 (775)
T ss_pred ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce
Confidence 11222333455789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 621 IrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
|+||.+.+.. |+++|.||...|..+.|-.+|+. |+||+.||.|++|++++++|+.++.+|.+.|++++. +|+
T Consensus 529 vKIW~is~fS-ClkT~eGH~~aVlra~F~~~~~q-liS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~-~~~ 600 (775)
T KOG0319|consen 529 VKIWSISTFS-CLKTFEGHTSAVLRASFIRNGKQ-LISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSV-SPL 600 (775)
T ss_pred EEEEEeccce-eeeeecCccceeEeeeeeeCCcE-EEeccCCCcEEEEeccchhhhhhhhhccceeEEEee-cCc
Confidence 9999999865 79999999999999999999884 559999999999999999999999999999999987 663
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.91 E-value=6.6e-23 Score=205.87 Aligned_cols=172 Identities=19% Similarity=0.316 Sum_probs=153.9
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
..+.+++.|.++-+|....+ +...+ .+++.++||...|..|..++||.+.++++.|+++++||+.+
T Consensus 29 ~~l~sasrDk~ii~W~L~~d-----------d~~~G---~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~ 94 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSD-----------DIKYG---VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT 94 (315)
T ss_pred ceEEEcccceEEEEEEeccC-----------ccccC---ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecC
Confidence 78899999999999977654 12222 56788899999999999999999999999999999999999
Q ss_pred CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC--CCCeEEEEEecCC-CeEEEEEeCCC
Q 005473 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH--STTVMSLDFHPSK-EDLLCSCDNNS 663 (695)
Q Consensus 587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh--~~~V~sl~fspdg-~~llaSgs~Dg 663 (695)
++..+.|.+|...|.+++|++|.+.+++|+.|++|++|++... |..++..+ .++|.||.|+|+. ..+|++++.|+
T Consensus 95 g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~--ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk 172 (315)
T KOG0279|consen 95 GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV--CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK 172 (315)
T ss_pred CcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc--EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc
Confidence 9999999999999999999999999999999999999999853 44444443 7899999999994 45888999999
Q ss_pred cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 664 EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 664 ~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+|++||+++-+....|.+|.+-|+.|++ +||
T Consensus 173 tvKvWnl~~~~l~~~~~gh~~~v~t~~v-SpD 203 (315)
T KOG0279|consen 173 TVKVWNLRNCQLRTTFIGHSGYVNTVTV-SPD 203 (315)
T ss_pred eEEEEccCCcchhhccccccccEEEEEE-CCC
Confidence 9999999999999999999999999999 997
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.90 E-value=1.8e-24 Score=225.98 Aligned_cols=183 Identities=18% Similarity=0.342 Sum_probs=165.4
Q ss_pred cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC
Q 005473 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (695)
Q Consensus 474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~ 553 (695)
+...+..+++.+.|++++ .++++|..++.|+.|... +..++.+.+
T Consensus 133 ilQaHDs~Vr~m~ws~~g---------------~wmiSgD~gG~iKyWqpn--------------------mnnVk~~~a 177 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNG---------------TWMISGDKGGMIKYWQPN--------------------MNNVKIIQA 177 (464)
T ss_pred HhhhhcccceeEEEccCC---------------CEEEEcCCCceEEecccc--------------------hhhhHHhhH
Confidence 445677888899998877 799999999999999432 233444555
Q ss_pred CC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 005473 554 ST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (695)
Q Consensus 554 H~-~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~ 632 (695)
|. ..|+|++|+|+...|++|++||+|+|||....+....+.+|.-.|.+++|+|...+||+||.|..|++||.+++. |
T Consensus 178 hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~-c 256 (464)
T KOG0284|consen 178 HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS-C 256 (464)
T ss_pred hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc-h
Confidence 55 889999999999999999999999999999999999999999999999999999999999999999999999976 6
Q ss_pred EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
+.++.+|+..|+.+.|.|+++ +|++++.|..+++||+++-+.+.++++|+..|++++| ||
T Consensus 257 l~tlh~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~W-hP 316 (464)
T KOG0284|consen 257 LATLHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTW-HP 316 (464)
T ss_pred hhhhhhccceEEEEEEcCCCC-eeEEccCCceEEEEehhHhHHHHHhhcchhhheeecc-cc
Confidence 999999999999999999996 6779999999999999999999999999999999999 98
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.90 E-value=2.5e-22 Score=202.78 Aligned_cols=185 Identities=27% Similarity=0.449 Sum_probs=162.6
Q ss_pred cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC
Q 005473 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (695)
Q Consensus 474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~ 553 (695)
+...+...+..+.|.+|. +.++++|.|+.+-+|+.. +...++.++-
T Consensus 50 ~LkGH~~Ki~~~~ws~Ds---------------r~ivSaSqDGklIvWDs~-------------------TtnK~haipl 95 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDS---------------RRIVSASQDGKLIVWDSF-------------------TTNKVHAIPL 95 (343)
T ss_pred EecccccceeeeEecCCc---------------CeEEeeccCCeEEEEEcc-------------------cccceeEEec
Confidence 344455678888998877 788999999999999553 3345667777
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (695)
Q Consensus 554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~------~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~ 627 (695)
....|..|+|+|.|+++|+|+-|..+.||++.+. ...+.+.+|++.+.|+.|-+ ...|+|+|.|.+.-+||++
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie 174 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIE 174 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcc
Confidence 7889999999999999999999999999999754 45577899999999999987 5789999999999999999
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
++.. +..|.||.+.|.++++.|.....|++|+.|+..++||+|.+.|+.+|.+|...|.+|+| +|+
T Consensus 175 ~g~~-~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~f-fP~ 240 (343)
T KOG0286|consen 175 TGQQ-TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRF-FPS 240 (343)
T ss_pred cceE-EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEE-ccC
Confidence 9775 89999999999999999944447779999999999999999999999999999999999 996
No 12
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=2.3e-22 Score=226.30 Aligned_cols=182 Identities=30% Similarity=0.516 Sum_probs=159.2
Q ss_pred CCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 005473 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (695)
Q Consensus 479 s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V 558 (695)
...+.++.|++++ .++++++.|+.+++|......+ .....+.+|...|
T Consensus 159 ~~sv~~~~fs~~g---------------~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v 206 (456)
T KOG0266|consen 159 CPSVTCVDFSPDG---------------RALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGV 206 (456)
T ss_pred cCceEEEEEcCCC---------------CeEEEccCCCcEEEeecccccc-----------------hhhccccccccce
Confidence 4566677777777 6689999999999996622210 2345558999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473 559 ESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (695)
Q Consensus 559 ~~v~fspdg~~LaSgs~Dg~V~IWDl-~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~ 637 (695)
.+|+|+|+++++++|+.|++|+|||+ ..+.+++++.+|...|++++|+|+++++++|+.|++|+|||+++++ ++..+.
T Consensus 207 ~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~ 285 (456)
T KOG0266|consen 207 SDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLK 285 (456)
T ss_pred eeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeee
Confidence 99999999999999999999999999 5668999999999999999999999999999999999999999954 699999
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe--EEEEEecCCCc--EEEEEEeCCC
Q 005473 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKNFFES--FVSVRVVQPR 695 (695)
Q Consensus 638 gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~--~v~~~~~h~~~--VtsVaf~sPd 695 (695)
+|.+.|++++|++++. +|++++.|+.|+|||+.++. |+..+.++... |+++.| +|+
T Consensus 286 ~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~f-sp~ 345 (456)
T KOG0266|consen 286 GHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQF-SPN 345 (456)
T ss_pred ccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEE-CCC
Confidence 9999999999999998 56678889999999999999 77888877665 999999 986
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.90 E-value=7.3e-22 Score=199.38 Aligned_cols=217 Identities=25% Similarity=0.332 Sum_probs=177.8
Q ss_pred ccccCCCCCceEEEEecCCCcc-ccccCC-------ccCCCCcEEEEeeCCCcEEEEeCCCC-CC---------------
Q 005473 473 TLQHNGASSKSLLMFGSDGMGS-LTSAPN-------QLTDMDRFVDDGSLDDNVESFLSPDD-AD--------------- 528 (695)
Q Consensus 473 ~l~~s~s~~~s~l~~~~dg~~~-la~s~~-------~l~~~~~~lasgS~D~~V~lw~~~~~-~~--------------- 528 (695)
...++++-+..++.|....... -+++-. .+.+...|||+|+.|....+|..... .+
T Consensus 68 r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgy 147 (343)
T KOG0286|consen 68 RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGY 147 (343)
T ss_pred CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccce
Confidence 3455667788888888765411 111111 14666799999999999999977532 11
Q ss_pred ---------------CCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEE
Q 005473 529 ---------------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKST 592 (695)
Q Consensus 529 ---------------~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~~~~~~ 592 (695)
..|.....||++++ ..+..+.+|.+-|.++.++| +++.+++|+.|+..+|||++.+.++.+
T Consensus 148 lScC~f~dD~~ilT~SGD~TCalWDie~g---~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qt 224 (343)
T KOG0286|consen 148 LSCCRFLDDNHILTGSGDMTCALWDIETG---QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT 224 (343)
T ss_pred eEEEEEcCCCceEecCCCceEEEEEcccc---eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEe
Confidence 11223356777777 45667789999999999999 999999999999999999999999999
Q ss_pred ecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (695)
Q Consensus 593 l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g--h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl 670 (695)
|.+|.+.|.+|+|.|+|.-|+||++|++.|+||+|.... +..|.. ....|++|+|+-.|+ ||++|..|..+.+||.
T Consensus 225 F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 225 FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDT 302 (343)
T ss_pred ecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeec
Confidence 999999999999999999999999999999999998765 555552 235799999999998 6668899999999999
Q ss_pred CCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 671 NNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 671 ~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
-.++.+..+.+|.+.|++|.. +||
T Consensus 303 lk~e~vg~L~GHeNRvScl~~-s~D 326 (343)
T KOG0286|consen 303 LKGERVGVLAGHENRVSCLGV-SPD 326 (343)
T ss_pred cccceEEEeeccCCeeEEEEE-CCC
Confidence 999999999999999999998 986
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.90 E-value=1e-22 Score=209.83 Aligned_cols=171 Identities=20% Similarity=0.350 Sum_probs=157.4
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005473 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (695)
Q Consensus 503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IW 582 (695)
.+.+.|+++|+.|+++++|+...+ ....++.||...|..|++|+-..||++|+.|+.|+.|
T Consensus 160 dP~n~wf~tgs~DrtikIwDlatg-------------------~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 160 DPGNEWFATGSADRTIKIWDLATG-------------------QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred CCCceeEEecCCCceeEEEEcccC-------------------eEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 334589999999999999976544 3456788999999999999999999999999999999
Q ss_pred ECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (695)
Q Consensus 583 Dl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D 662 (695)
|++..+.++.+.||-+.|+|++.+|.-..|+||+.|.++||||+++.. .+.++.||...|.+|.+.|..+. +++|+.|
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpq-vit~S~D 298 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQ-VITGSHD 298 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCc-eEEecCC
Confidence 999999999999999999999999999999999999999999999855 59999999999999999998774 5599999
Q ss_pred CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 663 SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 663 g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
++|++||++.|+...++..|...|.+++. ||+
T Consensus 299 ~tvrlWDl~agkt~~tlt~hkksvral~l-hP~ 330 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHKKSVRALCL-HPK 330 (460)
T ss_pred ceEEEeeeccCceeEeeecccceeeEEec-CCc
Confidence 99999999999999999999999999999 985
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.89 E-value=3.9e-22 Score=211.71 Aligned_cols=179 Identities=21% Similarity=0.401 Sum_probs=158.5
Q ss_pred CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 005473 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (695)
Q Consensus 480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~ 559 (695)
.+++.+.|+.+| .++++|+.||.+++|..+.. .+.++..|+++|.
T Consensus 236 kdVT~L~Wn~~G---------------~~LatG~~~G~~riw~~~G~--------------------l~~tl~~HkgPI~ 280 (524)
T KOG0273|consen 236 KDVTSLDWNNDG---------------TLLATGSEDGEARIWNKDGN--------------------LISTLGQHKGPIF 280 (524)
T ss_pred CCcceEEecCCC---------------CeEEEeecCcEEEEEecCch--------------------hhhhhhccCCceE
Confidence 488999999988 78999999999999965332 3456678999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------------------------------------EEEEecccCC
Q 005473 560 SCHFSPDGKLLATGGHDKKAVLWCTESFT-----------------------------------------VKSTLEEHTQ 598 (695)
Q Consensus 560 ~v~fspdg~~LaSgs~Dg~V~IWDl~t~~-----------------------------------------~~~~l~~H~~ 598 (695)
++.|+.+|.||++++.|+++.|||..+++ ++.++.+|.+
T Consensus 281 slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g 360 (524)
T KOG0273|consen 281 SLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG 360 (524)
T ss_pred EEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccC
Confidence 99999999999999999999999985432 3445668999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCC--------eEEEEEeCCCcEEEEEC
Q 005473 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--------DLLCSCDNNSEIRYWSI 670 (695)
Q Consensus 599 ~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~--------~llaSgs~Dg~IriWDl 670 (695)
.|.++.|.|.+.+|+|+|+|++++||...... ++..+.+|...|..+.|+|+|+ ..+++++.|++|++||+
T Consensus 361 ~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 361 EVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred ceEEEEECCCCceEEEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc
Confidence 99999999999999999999999999998755 5889999999999999999763 36789999999999999
Q ss_pred CCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 671 NNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 671 ~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
..|.|+.+|..|..+|.+|+| +|+
T Consensus 440 ~~gv~i~~f~kH~~pVysvaf-S~~ 463 (524)
T KOG0273|consen 440 ESGVPIHTLMKHQEPVYSVAF-SPN 463 (524)
T ss_pred cCCceeEeeccCCCceEEEEe-cCC
Confidence 999999999999999999999 986
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=7.3e-22 Score=222.17 Aligned_cols=161 Identities=27% Similarity=0.484 Sum_probs=146.1
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
.++++++.|.++++|+.... ...++++++|...|+||+|+|+|++|++|+.|++|+|||+++
T Consensus 216 ~~l~s~s~D~tiriwd~~~~------------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~ 277 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKDD------------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT 277 (456)
T ss_pred cEEEEecCCceEEEeeccCC------------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC
Confidence 69999999999999966222 256788999999999999999999999999999999999999
Q ss_pred CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eEEEEecCCCC--eEEEEEecCCCeEEEEEeCCC
Q 005473 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNS 663 (695)
Q Consensus 587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~-~l~~~~gh~~~--V~sl~fspdg~~llaSgs~Dg 663 (695)
++++..+.+|.+.|++++|++++.+|++++.|+.|+|||+.++.. ++..+.++... |+++.|+|++.+ ++++..|+
T Consensus 278 ~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-ll~~~~d~ 356 (456)
T KOG0266|consen 278 GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-LLSASLDR 356 (456)
T ss_pred CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-EEEecCCC
Confidence 999999999999999999999999999999999999999998774 46777777766 999999999985 55888899
Q ss_pred cEEEEECCCCeEEEEEecCCCcE
Q 005473 664 EIRYWSINNGSCAGVFKNFFESF 686 (695)
Q Consensus 664 ~IriWDl~tg~~v~~~~~h~~~V 686 (695)
.|++||++.+.++..+.+|...+
T Consensus 357 ~~~~w~l~~~~~~~~~~~~~~~~ 379 (456)
T KOG0266|consen 357 TLKLWDLRSGKSVGTYTGHSNLV 379 (456)
T ss_pred eEEEEEccCCcceeeecccCCcc
Confidence 99999999999999999998764
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=7.2e-22 Score=204.26 Aligned_cols=169 Identities=20% Similarity=0.414 Sum_probs=154.4
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (695)
Q Consensus 504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD 583 (695)
+...++++++.|.+|+.|....+ -+++++.+|...|..+..+.||.++|+|+.|-+|++|-
T Consensus 203 P~gd~ilS~srD~tik~We~~tg-------------------~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 203 PLGDHILSCSRDNTIKAWECDTG-------------------YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWV 263 (406)
T ss_pred ecCCeeeecccccceeEEecccc-------------------eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEE
Confidence 33488999999999999965433 47889999999999999999999999999999999999
Q ss_pred CCCCeEEEEecccCCCeEEEEEcCC----------C-----CEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEE
Q 005473 584 TESFTVKSTLEEHTQWITDVRFSPS----------L-----SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (695)
Q Consensus 584 l~t~~~~~~l~~H~~~V~~v~~spd----------g-----~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~f 648 (695)
+.++.|...+++|..+|.|++|.|. + .++++++.|++||+||+.++. |+.++.||..+|..++|
T Consensus 264 ~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-cL~tL~ghdnwVr~~af 342 (406)
T KOG0295|consen 264 VATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-CLFTLVGHDNWVRGVAF 342 (406)
T ss_pred eccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe-EEEEEecccceeeeeEE
Confidence 9999999999999999999999763 2 388999999999999999976 69999999999999999
Q ss_pred ecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 649 spdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
+|.|+ +|++|.+|++++|||+++++|+.++.+|..-|++++| |-
T Consensus 343 ~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf-h~ 386 (406)
T KOG0295|consen 343 SPGGK-YILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF-HK 386 (406)
T ss_pred cCCCe-EEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec-CC
Confidence 99998 5569999999999999999999999999999999999 63
No 18
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.8e-21 Score=192.57 Aligned_cols=183 Identities=23% Similarity=0.388 Sum_probs=156.5
Q ss_pred CceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEe-cCCCCCeE
Q 005473 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVE 559 (695)
Q Consensus 481 ~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l-~~H~~~V~ 559 (695)
.+-.+.|+|... ..+++|+.|+.|++|.... +..+.+...+ .+|+..|.
T Consensus 16 r~W~~awhp~~g--------------~ilAscg~Dk~vriw~~~~----------------~~s~~ck~vld~~hkrsVR 65 (312)
T KOG0645|consen 16 RVWSVAWHPGKG--------------VILASCGTDKAVRIWSTSS----------------GDSWTCKTVLDDGHKRSVR 65 (312)
T ss_pred cEEEEEeccCCc--------------eEEEeecCCceEEEEecCC----------------CCcEEEEEeccccchheee
Confidence 466778887521 5899999999999996542 1123444444 37999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeEEE
Q 005473 560 SCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRT 635 (695)
Q Consensus 560 ~v~fspdg~~LaSgs~Dg~V~IWDl~--t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~--~~l~~ 635 (695)
+|+|+|.|++|++|+.|.++.||.-. ..+++.+++||...|.|++|+++|++|||+++|+.|.||.+..+. .|+..
T Consensus 66 svAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aV 145 (312)
T KOG0645|consen 66 SVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAV 145 (312)
T ss_pred eeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEee
Confidence 99999999999999999999999754 457889999999999999999999999999999999999998543 47889
Q ss_pred EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-C--CeEEEEEecCCCcEEEEEEeCCC
Q 005473 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-N--GSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 636 ~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~-t--g~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+.+|...|..+.|||... ||++|+.|.+|++|+-. . -.|+.++.+|...|.+++| +|.
T Consensus 146 L~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F-~~~ 206 (312)
T KOG0645|consen 146 LQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAF-DNI 206 (312)
T ss_pred eccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEe-cCC
Confidence 999999999999999865 88899999999999876 2 3799999999999999999 873
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.88 E-value=8.8e-23 Score=213.39 Aligned_cols=201 Identities=22% Similarity=0.282 Sum_probs=171.1
Q ss_pred ccccCCCCCceEEEEecCCCcc--------ccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCce
Q 005473 473 TLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (695)
Q Consensus 473 ~l~~s~s~~~s~l~~~~dg~~~--------la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~ 544 (695)
...+++.....+..|.+.-... -++..-.+.+.+..++++|.|++|++|++...
T Consensus 151 ~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~------------------ 212 (464)
T KOG0284|consen 151 TWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP------------------ 212 (464)
T ss_pred CEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC------------------
Confidence 4455677777888887753210 11111123334477799999999999976433
Q ss_pred eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 005473 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (695)
Q Consensus 545 ~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvW 624 (695)
++...|++|.--|.||+|+|.-.+||+|+.|..|++||.+++.|+.++.+|+..|..+.|+|++++|+|+|.|..+++|
T Consensus 213 -kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~ 291 (464)
T KOG0284|consen 213 -KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVF 291 (464)
T ss_pred -chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEE
Confidence 3345668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cCCCcEEEEEEeCC
Q 005473 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-NFFESFVSVRVVQP 694 (695)
Q Consensus 625 Dl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~h~~~VtsVaf~sP 694 (695)
|+++.+. +.++.+|+..|+++.|+|-...+|++|+.||.|.+|.+...+++..+. +|...|++++| ||
T Consensus 292 DiR~mkE-l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~-hP 360 (464)
T KOG0284|consen 292 DIRTMKE-LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAY-HP 360 (464)
T ss_pred ehhHhHH-HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeec-cc
Confidence 9997665 899999999999999999999999999999999999999778887777 89999999999 98
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.88 E-value=2.1e-21 Score=206.24 Aligned_cols=194 Identities=21% Similarity=0.330 Sum_probs=160.1
Q ss_pred CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCC---------C-CCc-------c-------
Q 005473 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD---------P-RDR-------V------- 533 (695)
Q Consensus 478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~---------~-~~~-------~------- 533 (695)
+..++..+.|..+| .|+++++.|+++-+|+...+.. + -|. +
T Consensus 275 HkgPI~slKWnk~G---------------~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~ 339 (524)
T KOG0273|consen 275 HKGPIFSLKWNKKG---------------TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDG 339 (524)
T ss_pred cCCceEEEEEcCCC---------------CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCc
Confidence 44566666666655 6889999999999998755421 1 000 0
Q ss_pred -ccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCC---
Q 005473 534 -GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL--- 609 (695)
Q Consensus 534 -~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg--- 609 (695)
.++..+ -..+++.++.+|.++|.++.|+|.|.+|++|++|++++||.+....+...+.+|...|+.+.|+|+|
T Consensus 340 ~i~V~kv---~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~ 416 (524)
T KOG0273|consen 340 CIHVCKV---GEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVT 416 (524)
T ss_pred eEEEEEe---cCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCcc
Confidence 111111 1225678889999999999999999999999999999999999999999999999999999999965
Q ss_pred ------CEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC
Q 005473 610 ------SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF 683 (695)
Q Consensus 610 ------~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~ 683 (695)
..+++++.|++|++||+..+. |+.+|..|...|++|+|+|+|+ ++++|+.||.|.||++++++.++.+.+.
T Consensus 417 ~n~~~~~~l~sas~dstV~lwdv~~gv-~i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~~~l~~s~~~~- 493 (524)
T KOG0273|consen 417 SNPNMNLMLASASFDSTVKLWDVESGV-PIHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKTGKLVKSYQGT- 493 (524)
T ss_pred CCCcCCceEEEeecCCeEEEEEccCCc-eeEeeccCCCceEEEEecCCCc-EEEecCCCCeeEeccccchheeEeecCC-
Confidence 368999999999999999865 6999999999999999999998 7779999999999999999999999755
Q ss_pred CcEEEEEEeC
Q 005473 684 ESFVSVRVVQ 693 (695)
Q Consensus 684 ~~VtsVaf~s 693 (695)
+.|..|+| +
T Consensus 494 ~~Ifel~W-n 502 (524)
T KOG0273|consen 494 GGIFELCW-N 502 (524)
T ss_pred CeEEEEEE-c
Confidence 56888888 5
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.87 E-value=2.7e-21 Score=191.49 Aligned_cols=145 Identities=24% Similarity=0.415 Sum_probs=127.2
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------------------------------------
Q 005473 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-------------------------------------- 587 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~-------------------------------------- 587 (695)
.++.++.+|+..|++|.|..+|+++++|++||+|+|||++..
T Consensus 74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDL 153 (311)
T ss_pred CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEc
Confidence 378889999999999999999999999999999999998631
Q ss_pred ----------------------------------------------------eEEEEecccCCCeEEEEEcCCCCEEEEE
Q 005473 588 ----------------------------------------------------TVKSTLEEHTQWITDVRFSPSLSRLATS 615 (695)
Q Consensus 588 ----------------------------------------------------~~~~~l~~H~~~V~~v~~spdg~~LaTg 615 (695)
+++..+..|.+.|..+.++|++++|+|+
T Consensus 154 ~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 154 GENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred cCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 1122334688899999999999999999
Q ss_pred eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 616 s~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf 691 (695)
|.|++++||++++.-+....+.+|..+|+.++|+.||. +|++|+.|+.+|+||+..++.++.+.+|..+..|++.
T Consensus 234 ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~-YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 234 SSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGE-YLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred cCCceEEEEecCCceeeEEEeecCCceEEeeeeccCcc-EEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 99999999999987344678899999999999999998 5669999999999999999999999999988888876
No 22
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1.1e-22 Score=206.89 Aligned_cols=184 Identities=24% Similarity=0.380 Sum_probs=159.0
Q ss_pred CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 005473 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (695)
Q Consensus 480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~ 559 (695)
....+..|+||+ .|+++||.||.|++|+...+....| ..+..-..+.-+.++|.
T Consensus 214 Sh~EcA~FSPDg---------------qyLvsgSvDGFiEVWny~~GKlrKD-----------LkYQAqd~fMMmd~aVl 267 (508)
T KOG0275|consen 214 SHVECARFSPDG---------------QYLVSGSVDGFIEVWNYTTGKLRKD-----------LKYQAQDNFMMMDDAVL 267 (508)
T ss_pred cchhheeeCCCC---------------ceEeeccccceeeeehhccchhhhh-----------hhhhhhcceeecccceE
Confidence 355677888877 8999999999999998876643222 22223344566889999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 005473 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (695)
Q Consensus 560 ~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~-~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g 638 (695)
|+.|+.|...||+|+.||+|+||.+++|.|++.|. +|+..|+|+.|+.|+..+++++.|.+|||--+++++ +++.|.|
T Consensus 268 ci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrG 346 (508)
T KOG0275|consen 268 CISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRG 346 (508)
T ss_pred EEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-hHHHhcC
Confidence 99999999999999999999999999999999996 899999999999999999999999999999999977 5999999
Q ss_pred CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec--CCCcEEEEEE
Q 005473 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN--FFESFVSVRV 691 (695)
Q Consensus 639 h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~--h~~~VtsVaf 691 (695)
|++.|+.+.|.+||.+++ +++.||+|+||+.++.+|+.+|+. ...+|.+|-.
T Consensus 347 HsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~ 400 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVIL 400 (508)
T ss_pred ccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccCCCCcccceeEEE
Confidence 999999999999998665 999999999999999999999994 4456666654
No 23
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.9e-21 Score=191.81 Aligned_cols=173 Identities=19% Similarity=0.292 Sum_probs=153.4
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEE
Q 005473 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVL 581 (695)
Q Consensus 503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~I 581 (695)
..+++.+++++-||++++|+... ...++..++.|...|.+|.|++..+ .+++++.|++|++
T Consensus 70 e~~e~~~~~a~GDGSLrl~d~~~------------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKL 131 (311)
T KOG0277|consen 70 ENHENQVIAASGDGSLRLFDLTM------------------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKL 131 (311)
T ss_pred CCCcceEEEEecCceEEEeccCC------------------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEe
Confidence 34568899999999999996322 2247888999999999999999544 6778899999999
Q ss_pred EECCCCeEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 005473 582 WCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (695)
Q Consensus 582 WDl~t~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs 660 (695)
||....+.+.++.+|...|+...|+| ..++++++|.|+++++||++.....+. +..|...|.|++|+.-..+++++|+
T Consensus 132 W~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~ 210 (311)
T KOG0277|consen 132 WDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGG 210 (311)
T ss_pred ecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecC
Confidence 99999999999999999999999999 578999999999999999998876444 8899999999999988888999999
Q ss_pred CCCcEEEEECCC-CeEEEEEecCCCcEEEEEEeCCC
Q 005473 661 NNSEIRYWSINN-GSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 661 ~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sPd 695 (695)
.|+.||+||+++ ..++.++.+|.-.|..|+| +|.
T Consensus 211 vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~-Sph 245 (311)
T KOG0277|consen 211 VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKF-SPH 245 (311)
T ss_pred CCceEEEEehhhccccceeecCCceEEEEEec-Ccc
Confidence 999999999997 5688999999999999999 983
No 24
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.86 E-value=4.4e-21 Score=203.54 Aligned_cols=176 Identities=23% Similarity=0.387 Sum_probs=153.6
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE 585 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd-g~~LaSgs~Dg~V~IWDl~ 585 (695)
-.+++++.|..|++|+...... ......+...+.+|.+.|..|+|++- ..+|++++.|+.+.|||++
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~------------~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R 258 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESK------------EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR 258 (422)
T ss_pred eeEeeccCCCcEEEEecccccc------------CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcC
Confidence 5678999999999998754421 12334566778999999999999994 5588999999999999999
Q ss_pred --CCeEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473 586 --SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (695)
Q Consensus 586 --t~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D 662 (695)
+.++.....+|.+.|+|++|+| ++.+|||||.|++|++||+|+...++.++.+|...|.+|.|+|+...+|++++.|
T Consensus 259 ~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D 338 (422)
T KOG0264|consen 259 SNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD 338 (422)
T ss_pred CCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC
Confidence 6777788899999999999999 5678899999999999999999889999999999999999999999999999999
Q ss_pred CcEEEEECCC-C-------------eEEEEEecCCCcEEEEEEeCCC
Q 005473 663 SEIRYWSINN-G-------------SCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 663 g~IriWDl~t-g-------------~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+.+.|||+.. | +++....||+..|..+.| +|.
T Consensus 339 ~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsW-np~ 384 (422)
T KOG0264|consen 339 RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSW-NPN 384 (422)
T ss_pred CcEEEEeccccccccChhhhccCCcceeEEecCcccccccccC-CCC
Confidence 9999999963 1 345777899999999999 985
No 25
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.86 E-value=6.8e-21 Score=193.05 Aligned_cols=181 Identities=17% Similarity=0.310 Sum_probs=155.2
Q ss_pred CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (695)
Q Consensus 478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~ 557 (695)
+...+..+.|+|++ .++++|+.|..|.+|.+..+. .-+..+++|++.
T Consensus 46 h~geI~~~~F~P~g---------------s~~aSgG~Dr~I~LWnv~gdc------------------eN~~~lkgHsgA 92 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDG---------------SCFASGGSDRAIVLWNVYGDC------------------ENFWVLKGHSGA 92 (338)
T ss_pred CcceEEEEEECCCC---------------CeEeecCCcceEEEEeccccc------------------cceeeeccccce
Confidence 44688899999977 688999999999999754332 223556799999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF 636 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg-~~LaTgs~DgtIrvWDl~t~~~~l~~~ 636 (695)
|..+.|..|++.|++++.|++|+.||++++++++.+++|.+.|..+.-+.-| .++.+|+.||+++|||+|+.. +++++
T Consensus 93 VM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~ 171 (338)
T KOG0265|consen 93 VMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTF 171 (338)
T ss_pred eEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhcc
Confidence 9999999999999999999999999999999999999999999999844334 356788999999999999744 57777
Q ss_pred ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
.. .-.++++.|..++..++ +|+-|+.|++||++.+.++.++.||.++|+.|.. +|+
T Consensus 172 ~~-kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsl-s~~ 227 (338)
T KOG0265|consen 172 EN-KYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSL-SRY 227 (338)
T ss_pred cc-ceeEEEEEeccccccee-eccccCceeeeccccCcceEEeecccCceeeEEe-ccC
Confidence 53 45799999998888655 9999999999999999999999999999999987 763
No 26
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.86 E-value=8.1e-21 Score=197.40 Aligned_cols=185 Identities=22% Similarity=0.308 Sum_probs=154.8
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCC-CCCccc-----cccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005473 505 MDRFVDDGSLDDNVESFLSPDDAD-PRDRVG-----RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (695)
Q Consensus 505 ~~~~lasgS~D~~V~lw~~~~~~~-~~~~~~-----~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~ 578 (695)
....+++||+|.++++|....+.+ ...... .......+..-.++.++.||+.+|.+|.|++ ...+++++.|.+
T Consensus 204 sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHT 282 (423)
T KOG0313|consen 204 SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHT 282 (423)
T ss_pred CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccce
Confidence 346789999999999998332211 110000 1111122334567889999999999999997 778999999999
Q ss_pred EEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecCCCeEE
Q 005473 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLL 656 (695)
Q Consensus 579 V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~--~~l~~~~gh~~~V~sl~fspdg~~ll 656 (695)
|++||+.++.++.++.+ ...++|+.++|...+|++||.|..|++||.+++. .....|.||..+|.++.|+|...+.|
T Consensus 283 Ik~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~ 361 (423)
T KOG0313|consen 283 IKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQL 361 (423)
T ss_pred EEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEE
Confidence 99999999999988875 5678999999999999999999999999998765 44578999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCe-EEEEEecCCCcEEEEEE
Q 005473 657 CSCDNNSEIRYWSINNGS-CAGVFKNFFESFVSVRV 691 (695)
Q Consensus 657 aSgs~Dg~IriWDl~tg~-~v~~~~~h~~~VtsVaf 691 (695)
++|+.|+++++||+|+.+ ++..+.+|.+.|.++.|
T Consensus 362 ~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW 397 (423)
T KOG0313|consen 362 VSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDW 397 (423)
T ss_pred EEEecCCeEEEEEeccCCCcceeeccCCceEEEEec
Confidence 999999999999999877 99999999999999998
No 27
>PTZ00421 coronin; Provisional
Probab=99.86 E-value=7e-20 Score=206.88 Aligned_cols=193 Identities=15% Similarity=0.161 Sum_probs=151.1
Q ss_pred ccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 005473 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (695)
Q Consensus 475 ~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H 554 (695)
...+...+..+.|+|... .++++|+.|++|++|+...+... .....++..+.+|
T Consensus 71 l~GH~~~V~~v~fsP~d~--------------~~LaSgS~DgtIkIWdi~~~~~~------------~~~~~~l~~L~gH 124 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDP--------------QKLFTASEDGTIMGWGIPEEGLT------------QNISDPIVHLQGH 124 (493)
T ss_pred EeCCCCCEEEEEEcCCCC--------------CEEEEEeCCCEEEEEecCCCccc------------cccCcceEEecCC
Confidence 344566788888887332 68999999999999987543210 0112356678899
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 005473 555 TSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (695)
Q Consensus 555 ~~~V~~v~fspdg-~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l 633 (695)
...|.+|+|+|++ .+|++|+.|++|+|||+++++.+..+.+|...|.+++|+|++.+|++++.|++|+|||++++.. +
T Consensus 125 ~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-v 203 (493)
T PTZ00421 125 TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-V 203 (493)
T ss_pred CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-E
Confidence 9999999999985 6999999999999999999999999999999999999999999999999999999999998774 7
Q ss_pred EEEecCCCC-eEEEEEecCCCeEEEEE---eCCCcEEEEECCCCe-EEEEEecCC-CcEEEEEEeCCC
Q 005473 634 RTFTGHSTT-VMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGS-CAGVFKNFF-ESFVSVRVVQPR 695 (695)
Q Consensus 634 ~~~~gh~~~-V~sl~fspdg~~llaSg---s~Dg~IriWDl~tg~-~v~~~~~h~-~~VtsVaf~sPd 695 (695)
..+.+|.+. +..+.|.+++..++++| +.|+.|++||+++.. ++..+..+. ..+....| +|+
T Consensus 204 ~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~-d~d 270 (493)
T PTZ00421 204 SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFF-DED 270 (493)
T ss_pred EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEE-cCC
Confidence 788888765 45778999887666555 348999999998754 444444343 33444445 654
No 28
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.86 E-value=1.9e-21 Score=200.56 Aligned_cols=148 Identities=27% Similarity=0.477 Sum_probs=140.0
Q ss_pred eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 005473 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (695)
Q Consensus 544 ~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrv 623 (695)
.++....+.+|.+.|.||++.|.+.+|++|+.|++++|||+.++++..++.||...|..+++++-..+|++++.|+.|++
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 624 WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
||+...+. ++.+.||-+.|.|++.+|.-+ +|++|+.|.+|||||+++...+.++.||+.+|.+|.| .|
T Consensus 220 wDLe~nkv-IR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~-~~ 287 (460)
T KOG0285|consen 220 WDLEYNKV-IRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMC-QP 287 (460)
T ss_pred Eechhhhh-HHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEe-ec
Confidence 99998665 899999999999999999976 7779999999999999999999999999999999998 65
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=5.9e-21 Score=207.98 Aligned_cols=173 Identities=23% Similarity=0.395 Sum_probs=155.8
Q ss_pred cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005473 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (695)
Q Consensus 502 l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~I 581 (695)
+....+|+++|+.|..|++|..+. ...++.+.+|.+.|.|++.+|.--+++|+++|-+|++
T Consensus 63 fiaRknWiv~GsDD~~IrVfnynt-------------------~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKl 123 (794)
T KOG0276|consen 63 FIARKNWIVTGSDDMQIRVFNYNT-------------------GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKL 123 (794)
T ss_pred eeeccceEEEecCCceEEEEeccc-------------------ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEE
Confidence 556668999999999999996543 3678899999999999999999999999999999999
Q ss_pred EECCC-CeEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCC-CeEEEE
Q 005473 582 WCTES-FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCS 658 (695)
Q Consensus 582 WDl~t-~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg-~~llaS 658 (695)
||.+. ..|..+++||+..|.+|+|.| |.+.++++|-|++|+||.+.... +..++.||...|.||+|-+.| +.++++
T Consensus 124 W~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylIs 202 (794)
T KOG0276|consen 124 WDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLIS 202 (794)
T ss_pred eeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEEe
Confidence 99975 467889999999999999999 67899999999999999999865 589999999999999998754 236669
Q ss_pred EeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 659 CDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 659 gs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
|++|.+|+|||+.+..|+.++.||+.-|..+.| ||.
T Consensus 203 gaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~f-hp~ 238 (794)
T KOG0276|consen 203 GADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFF-HPE 238 (794)
T ss_pred cCCCceEEEeecchHHHHHHhhcccccceEEEe-cCC
Confidence 999999999999999999999999999999999 984
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.4e-20 Score=185.80 Aligned_cols=166 Identities=25% Similarity=0.385 Sum_probs=139.5
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (695)
Q Consensus 504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD 583 (695)
++.++|+++|+|.++.+|.-. .-.|.++.+|.||...|.|++|+++|++||+|+.|+.|.||.
T Consensus 71 p~g~~La~aSFD~t~~Iw~k~-----------------~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe 133 (312)
T KOG0645|consen 71 PHGRYLASASFDATVVIWKKE-----------------DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWE 133 (312)
T ss_pred CCCcEEEEeeccceEEEeecC-----------------CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEE
Confidence 344899999999999999332 235678999999999999999999999999999999999998
Q ss_pred CCC---CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--CCeeEEEEecCCCCeEEEEEecCCCeEEEE
Q 005473 584 TES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (695)
Q Consensus 584 l~t---~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t--~~~~l~~~~gh~~~V~sl~fspdg~~llaS 658 (695)
+.. .++...+.+|+..|..+.|+|...+|+++|.|.+|++|+-.. .-.|+.++.+|...|.+++|++.|. -+++
T Consensus 134 ~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s 212 (312)
T KOG0645|consen 134 IDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVS 212 (312)
T ss_pred ecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEE
Confidence 863 467888999999999999999999999999999999998762 2357899999999999999999997 4669
Q ss_pred EeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473 659 CDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 659 gs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf 691 (695)
|+.|++|+||-..+.- -.-|+..+..|+|
T Consensus 213 ~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W 241 (312)
T KOG0645|consen 213 CSDDGTVSIWRLYTDL----SGMHSRALYDVPW 241 (312)
T ss_pred ecCCcceEeeeeccCc----chhcccceEeeee
Confidence 9999999999965210 1134455555554
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1e-20 Score=195.72 Aligned_cols=148 Identities=21% Similarity=0.376 Sum_probs=138.5
Q ss_pred eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 005473 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (695)
Q Consensus 545 ~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvW 624 (695)
+.+++.+.+|.-.|.++.|-|.|.+|+|++.|.+|++|++.++.++.++.+|...|..++.+-||.++++++.|.+|++|
T Consensus 183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence 46777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecC--------------CCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEE
Q 005473 625 DTENPDYSLRTFTGHSTTVMSLDFHPS--------------KEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVR 690 (695)
Q Consensus 625 Dl~t~~~~l~~~~gh~~~V~sl~fspd--------------g~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVa 690 (695)
-+.++. |...+++|...|.|++|.|. +..++++++.|++|++||+.+|.|+.++.+|..+|..++
T Consensus 263 ~~~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a 341 (406)
T KOG0295|consen 263 VVATKQ-CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA 341 (406)
T ss_pred Eeccch-hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeE
Confidence 999854 67889999999999999872 234888999999999999999999999999999999999
Q ss_pred EeCC
Q 005473 691 VVQP 694 (695)
Q Consensus 691 f~sP 694 (695)
| ||
T Consensus 342 f-~p 344 (406)
T KOG0295|consen 342 F-SP 344 (406)
T ss_pred E-cC
Confidence 9 98
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=8.5e-21 Score=206.74 Aligned_cols=169 Identities=20% Similarity=0.300 Sum_probs=150.8
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 005473 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVL 581 (695)
Q Consensus 503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~I 581 (695)
++...++.++|.|-+|++|+... .+.+..++.||+..|.+|+|+| |.+.+|||+-|++|+|
T Consensus 106 HPt~P~vLtsSDDm~iKlW~we~------------------~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 106 HPTLPYVLTSSDDMTIKLWDWEN------------------EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred cCCCCeEEecCCccEEEEeeccC------------------ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence 34458999999999999996633 3577889999999999999999 5679999999999999
Q ss_pred EECCCCeEEEEecccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEE
Q 005473 582 WCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (695)
Q Consensus 582 WDl~t~~~~~~l~~H~~~V~~v~~spd--g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSg 659 (695)
|.+....+..++++|...|+||+|-+. ..+|+||++|.+|+|||..+ +.|+.++.||...|.+++|||.=+ ++++|
T Consensus 168 Wslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-k~CV~TLeGHt~Nvs~v~fhp~lp-iiisg 245 (794)
T KOG0276|consen 168 WSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-KSCVQTLEGHTNNVSFVFFHPELP-IIISG 245 (794)
T ss_pred EEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch-HHHHHHhhcccccceEEEecCCCc-EEEEe
Confidence 999999999999999999999999874 46999999999999999998 457999999999999999999987 77899
Q ss_pred eCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473 660 DNNSEIRYWSINNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 660 s~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf 691 (695)
++||+||||+-.+-+...++.-.-+.|+||+-
T Consensus 246 sEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~ 277 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKLEKTLNYGLERVWCIAA 277 (794)
T ss_pred cCCccEEEecCcceehhhhhhcCCceEEEEee
Confidence 99999999999988888777777777888775
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.4e-20 Score=183.51 Aligned_cols=178 Identities=19% Similarity=0.294 Sum_probs=157.9
Q ss_pred CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (695)
Q Consensus 478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~ 557 (695)
+...+..+.|+-+| +|+.+++.|.+|++|+...+ ..++++.+|...
T Consensus 16 ~qgaV~avryN~dG---------------nY~ltcGsdrtvrLWNp~rg-------------------~liktYsghG~E 61 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDG---------------NYCLTCGSDRTVRLWNPLRG-------------------ALIKTYSGHGHE 61 (307)
T ss_pred cccceEEEEEccCC---------------CEEEEcCCCceEEeeccccc-------------------ceeeeecCCCce
Confidence 44577777888777 78899999999999965433 578899999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeEEEE
Q 005473 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTF 636 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~-~~l~~~ 636 (695)
|..++.+.|...|++|+.|+.|.+||+.+++.++.+.+|.+.|+.|+|+.+...+++|+.|.+|++||.++.. .++..+
T Consensus 62 VlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 62 VLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred eeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998754 468888
Q ss_pred ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
......|.+++... +.|++|+.||++|.||++.|.....+.+| +|+++.| +||
T Consensus 142 dea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~-s~d 194 (307)
T KOG0316|consen 142 DEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSF-SKD 194 (307)
T ss_pred hhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEe-cCC
Confidence 88889999999874 36779999999999999999888777554 7899999 875
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.85 E-value=7e-22 Score=202.75 Aligned_cols=213 Identities=18% Similarity=0.308 Sum_probs=172.4
Q ss_pred ccccccCCCCCceEEEEecCCCccccc------cCCccCCCCcEEEEeeCCCcEEEEeCCCCC-----------------
Q 005473 471 RPTLQHNGASSKSLLMFGSDGMGSLTS------APNQLTDMDRFVDDGSLDDNVESFLSPDDA----------------- 527 (695)
Q Consensus 471 ~~~l~~s~s~~~s~l~~~~dg~~~la~------s~~~l~~~~~~lasgS~D~~V~lw~~~~~~----------------- 527 (695)
+.....+|.++.++..|....-.++.. +.-.+.-.++.+++||.|.+|++|++..+.
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf 285 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRF 285 (499)
T ss_pred cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEE
Confidence 335566778888888887654322111 111233445789999999999999988764
Q ss_pred -------CCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCe
Q 005473 528 -------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI 600 (695)
Q Consensus 528 -------~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V 600 (695)
..+|+...+|+..........+.+.||...|+.|.|+ .++|++++.|.+|++|++.++++++++.+|...|
T Consensus 286 ~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGI 363 (499)
T KOG0281|consen 286 SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGI 363 (499)
T ss_pred eCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccc
Confidence 3455666777766655556667788999999999996 5699999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe------
Q 005473 601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------ 674 (695)
Q Consensus 601 ~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~------ 674 (695)
-|+.+. ++++++|+.|.+||+||+..+. |++.+.||+.-|.|+.|... -+++|+.||+|+|||+..+.
T Consensus 364 AClQYr--~rlvVSGSSDntIRlwdi~~G~-cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpra~~ 437 (499)
T KOG0281|consen 364 ACLQYR--DRLVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPRAPA 437 (499)
T ss_pred eehhcc--CeEEEecCCCceEEEEeccccH-HHHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCCcccc
Confidence 999885 7899999999999999999866 69999999999999999843 46699999999999997643
Q ss_pred ---EEEEEecCCCcEEEEEE
Q 005473 675 ---CAGVFKNFFESFVSVRV 691 (695)
Q Consensus 675 ---~v~~~~~h~~~VtsVaf 691 (695)
|+.++..|++.|..+.|
T Consensus 438 ~~~Cl~~lv~hsgRVFrLQF 457 (499)
T KOG0281|consen 438 STLCLRTLVEHSGRVFRLQF 457 (499)
T ss_pred cchHHHhhhhccceeEEEee
Confidence 67777789999988888
No 35
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.84 E-value=4.8e-21 Score=204.21 Aligned_cols=169 Identities=22% Similarity=0.382 Sum_probs=134.5
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (695)
Q Consensus 505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl 584 (695)
..+++.+++.|+.|++|++-++ ..+++++.+|..+|.+++|+.+|..|+|++.|+.|++||+
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~------------------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDD------------------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred eeeEEEecCCCceEEEEEEecC------------------cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence 3489999999999999966432 2578899999999999999999999999999999999999
Q ss_pred CCCeEEEEecccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCee-------------------------------
Q 005473 585 ESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYS------------------------------- 632 (695)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~v~~spdg-~~LaTgs~DgtIrvWDl~t~~~~------------------------------- 632 (695)
++|+++..+.. ...++|+.|+|++ +.+++|+.|+.|+.||+++++..
T Consensus 288 ETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~ 366 (503)
T KOG0282|consen 288 ETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSV 366 (503)
T ss_pred ccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccE
Confidence 99999877753 3345566666654 45555555666666665532100
Q ss_pred --------------------------------------------------------EEEEecCC--CCeEEEEEecCCCe
Q 005473 633 --------------------------------------------------------LRTFTGHS--TTVMSLDFHPSKED 654 (695)
Q Consensus 633 --------------------------------------------------------l~~~~gh~--~~V~sl~fspdg~~ 654 (695)
.+.|.||. +.-+.|.|+|||.
T Consensus 367 riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~- 445 (503)
T KOG0282|consen 367 RIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR- 445 (503)
T ss_pred EEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC-
Confidence 11244665 4456789999998
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 655 LLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 655 llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
+||+|+.||.+.+||.++-+.+..+++|..+|+.+.| ||
T Consensus 446 ~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~w-HP 484 (503)
T KOG0282|consen 446 TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDW-HP 484 (503)
T ss_pred eEEeecCCccEEEeechhhhhhhccccCCcceEEEEe-cC
Confidence 7779999999999999999999999999999999999 98
No 36
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=8.1e-21 Score=188.65 Aligned_cols=168 Identities=24% Similarity=0.309 Sum_probs=147.0
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~ 585 (695)
+.+.++|+|++||+|+.... ..+.++.+|..-|+...|+| ..+++++++.|++++|||++
T Consensus 118 ~~~ltsSWD~TiKLW~~~r~-------------------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr 178 (311)
T KOG0277|consen 118 RIFLTSSWDGTIKLWDPNRP-------------------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR 178 (311)
T ss_pred eeEEeeccCCceEeecCCCC-------------------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence 34455699999999955332 34677899999999999999 57899999999999999998
Q ss_pred CCeEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473 586 SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (695)
Q Consensus 586 t~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~ 664 (695)
.......++.|...|.|+.|+. +...|+||+.|+.||+||++.-+.++..+.+|.-.|..|.|+|....+|++++.|-+
T Consensus 179 ~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT 258 (311)
T KOG0277|consen 179 SPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT 258 (311)
T ss_pred CCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce
Confidence 6544445899999999999987 677899999999999999999888999999999999999999999999999999999
Q ss_pred EEEEECCC-CeEEEEEecCCCcEEEEEEeCC
Q 005473 665 IRYWSINN-GSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 665 IriWDl~t-g~~v~~~~~h~~~VtsVaf~sP 694 (695)
+||||... ..++.+...|++-|..+.| ++
T Consensus 259 ~riw~~~~~ds~~e~~~~HtEFv~g~Dw-s~ 288 (311)
T KOG0277|consen 259 VRIWDPERQDSAIETVDHHTEFVCGLDW-SL 288 (311)
T ss_pred EEecccccchhhhhhhhccceEEecccc-cc
Confidence 99999974 5688888899988888888 64
No 37
>PTZ00421 coronin; Provisional
Probab=99.84 E-value=1.3e-19 Score=204.68 Aligned_cols=143 Identities=22% Similarity=0.342 Sum_probs=126.3
Q ss_pred EEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEecccCCCeEEEEEcCCC-CEEEEEeCCC
Q 005473 549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR 619 (695)
Q Consensus 549 ~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~-------~~~~~l~~H~~~V~~v~~spdg-~~LaTgs~Dg 619 (695)
..+.+|.+.|++|+|+| ++++|++|+.|++|+|||+.+. .++..+.+|...|.+|+|+|++ .+|++|+.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 34679999999999999 8899999999999999999764 3567889999999999999975 6999999999
Q ss_pred eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcE-EEEEEeCC
Q 005473 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESF-VSVRVVQP 694 (695)
Q Consensus 620 tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~V-tsVaf~sP 694 (695)
+|+|||++++. ++..+.+|...|.+++|+|+|. +|++|+.|+.|+|||+++++++..+.+|.+.+ ..+.| .|
T Consensus 149 tVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w-~~ 221 (493)
T PTZ00421 149 VVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLW-AK 221 (493)
T ss_pred EEEEEECCCCe-EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEE-cC
Confidence 99999999865 4788899999999999999987 77799999999999999999999999997653 35566 54
No 38
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=1.4e-19 Score=201.00 Aligned_cols=166 Identities=20% Similarity=0.365 Sum_probs=145.8
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
.++++|+.|+.|++|+...+ -|+.++..|+..|+.+.|+..|+.|++++-||+|+.||+..
T Consensus 363 q~iaTG~eDgKVKvWn~~Sg-------------------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 363 QLIATGAEDGKVKVWNTQSG-------------------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred cEEEeccCCCcEEEEeccCc-------------------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 79999999999999966433 47889999999999999999999999999999999999999
Q ss_pred CeEEEEeccc-CCCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473 587 FTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRT-VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (695)
Q Consensus 587 ~~~~~~l~~H-~~~V~~v~~spdg~~LaTgs~Dgt-IrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~ 664 (695)
.++.+++... .-...|++..|.|.++..|+.|.. |+||++.+++. +-.+.||+++|.+++|+|++. +|++++.|.+
T Consensus 424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql-lDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkT 501 (893)
T KOG0291|consen 424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL-LDILSGHEGPVSGLSFSPDGS-LLASGSWDKT 501 (893)
T ss_pred cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee-eehhcCCCCcceeeEEccccC-eEEeccccce
Confidence 9999998654 344678999999999999988864 99999999886 899999999999999999998 8889999999
Q ss_pred EEEEECCCC-eEEEEEecCCCcEEEEEEeCCC
Q 005473 665 IRYWSINNG-SCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 665 IriWDl~tg-~~v~~~~~h~~~VtsVaf~sPd 695 (695)
||+||+-.. ..+.++ .+...|+.|+| +|+
T Consensus 502 VRiW~if~s~~~vEtl-~i~sdvl~vsf-rPd 531 (893)
T KOG0291|consen 502 VRIWDIFSSSGTVETL-EIRSDVLAVSF-RPD 531 (893)
T ss_pred EEEEEeeccCceeeeE-eeccceeEEEE-cCC
Confidence 999999654 345555 46677899999 986
No 39
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=1.5e-19 Score=183.55 Aligned_cols=189 Identities=22% Similarity=0.343 Sum_probs=151.9
Q ss_pred cccccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEe
Q 005473 472 PTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI 551 (695)
Q Consensus 472 ~~l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l 551 (695)
..+.-.+.+.++.+.|+|... .+++.||||++||+|.+..... ..-+..
T Consensus 20 ~ev~~pP~DsIS~l~FSP~~~--------------~~~~A~SWD~tVR~wevq~~g~-----------------~~~ka~ 68 (347)
T KOG0647|consen 20 YEVPNPPEDSISALAFSPQAD--------------NLLAAGSWDGTVRIWEVQNSGQ-----------------LVPKAQ 68 (347)
T ss_pred eecCCCcccchheeEeccccC--------------ceEEecccCCceEEEEEecCCc-----------------ccchhh
Confidence 345556677889999998443 7889999999999997754321 011345
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCC
Q 005473 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENP 629 (695)
Q Consensus 552 ~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~--~LaTgs~DgtIrvWDl~t~ 629 (695)
..|.++|.|++|+.||..+++|+.|+.+++||+.+++. ..+..|.++|.+++|-+... .|+|||.|++||+||+|..
T Consensus 69 ~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 69 QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS 147 (347)
T ss_pred hccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence 67999999999999999999999999999999999854 57778999999999988655 8999999999999998832
Q ss_pred Ce-----------------------------------------------------e------------------------
Q 005473 630 DY-----------------------------------------------------S------------------------ 632 (695)
Q Consensus 630 ~~-----------------------------------------------------~------------------------ 632 (695)
.. |
T Consensus 148 ~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~i 227 (347)
T KOG0647|consen 148 NPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYI 227 (347)
T ss_pred CeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEec
Confidence 10 0
Q ss_pred -------EEEEecCCC---------CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 633 -------LRTFTGHST---------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 633 -------l~~~~gh~~---------~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
-.+|++|.. .|.+|+|+|... .|++.+.||++.+||-.....+.+.+.|..+|++.+| +-
T Consensus 228 d~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~f-n~ 303 (347)
T KOG0647|consen 228 DDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSF-NR 303 (347)
T ss_pred CCCCccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhhhhhccCcCCCccceeEe-cC
Confidence 022445652 367899999876 5668888999999999888899999999999999999 64
No 40
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.83 E-value=1e-18 Score=176.68 Aligned_cols=182 Identities=29% Similarity=0.506 Sum_probs=158.2
Q ss_pred CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (695)
Q Consensus 477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~ 556 (695)
.+...+..+.|++++ +++++++.|+.|++|+..... ....+..|..
T Consensus 7 ~h~~~i~~~~~~~~~---------------~~l~~~~~~g~i~i~~~~~~~-------------------~~~~~~~~~~ 52 (289)
T cd00200 7 GHTGGVTCVAFSPDG---------------KLLATGSGDGTIKVWDLETGE-------------------LLRTLKGHTG 52 (289)
T ss_pred ccCCCEEEEEEcCCC---------------CEEEEeecCcEEEEEEeeCCC-------------------cEEEEecCCc
Confidence 345678888888865 678899999999999664331 3455678888
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~ 636 (695)
.|.++.|++++++|++++.|+.|+|||+.+++.+..+..|...|.++.|++++.++++++.|+.|++||+++.+ .+..+
T Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~ 131 (289)
T cd00200 53 PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTL 131 (289)
T ss_pred ceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEe
Confidence 99999999999999999999999999999888888899999999999999998888888889999999999755 47778
Q ss_pred ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
..|...|.+++|+|++. ++++++.|+.|++||+++++++..+..|...|.+++| +|+
T Consensus 132 ~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~-~~~ 188 (289)
T cd00200 132 RGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF-SPD 188 (289)
T ss_pred ccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccccccceeEecCccccceEEE-CCC
Confidence 88999999999999966 6767777999999999999999999999999999999 885
No 41
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.83 E-value=8.5e-21 Score=194.82 Aligned_cols=159 Identities=19% Similarity=0.385 Sum_probs=131.8
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
..+++|..|.+|++|+.. ...+.+.+.||++.|.|+.|. .++|++|+.|.+|+|||+.+
T Consensus 208 ~kiVSGlrDnTikiWD~n-------------------~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 208 EKIVSGLRDNTIKIWDKN-------------------SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred hhhhcccccCceEEeccc-------------------cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC
Confidence 457999999999999543 234567789999999999995 56999999999999999999
Q ss_pred CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (695)
Q Consensus 587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~--~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~ 664 (695)
++++.++.+|...|..+.|+ ..+++|++.|.+|.|||+..+.. +.+++.||...|..|+|+.. ++++++.|.+
T Consensus 267 ge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVsASgDRT 341 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRT 341 (499)
T ss_pred CchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEEecCCce
Confidence 99999999999999999997 46999999999999999987652 34567788888888888642 6667777777
Q ss_pred EEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473 665 IRYWSINNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 665 IriWDl~tg~~v~~~~~h~~~VtsVaf 691 (695)
|++|++.++++++++.+|..+|.|+.|
T Consensus 342 ikvW~~st~efvRtl~gHkRGIAClQY 368 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRTLNGHKRGIACLQY 368 (499)
T ss_pred EEEEeccceeeehhhhcccccceehhc
Confidence 777777777777777777777766654
No 42
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.4e-19 Score=204.07 Aligned_cols=196 Identities=15% Similarity=0.233 Sum_probs=155.0
Q ss_pred CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCC----------------------------
Q 005473 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD---------------------------- 528 (695)
Q Consensus 477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~---------------------------- 528 (695)
.+...+.++.|++|| +|+|+|+.|+.|++|.+...+.
T Consensus 265 ah~gaIw~mKFS~DG---------------KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~ 329 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG---------------KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSE 329 (712)
T ss_pred ccCCcEEEEEeCCCC---------------ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccc
Confidence 456688899999988 8999999999999997765110
Q ss_pred ----CCCcc---------ccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc
Q 005473 529 ----PRDRV---------GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE 595 (695)
Q Consensus 529 ----~~~~~---------~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~ 595 (695)
++... .......-.+..+++..+.||.+.|.++.||.+ .+|++++.|++||+|++...+|+++|.
T Consensus 330 ~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~- 407 (712)
T KOG0283|consen 330 EKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS- 407 (712)
T ss_pred ccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-
Confidence 00000 011111122445677889999999999999965 478899999999999999999999886
Q ss_pred cCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe
Q 005473 596 HTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (695)
Q Consensus 596 H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~ 674 (695)
|.+.|+||+|+| |.++|++||-||.||||++...+ +..+.....-|++++|.|||. .++.|+.+|.+++|+....+
T Consensus 408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred cCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCe
Confidence 999999999999 78999999999999999998754 344444457899999999998 55599999999999998777
Q ss_pred EEEEEe---------cCCCcEEEEEEeCC
Q 005473 675 CAGVFK---------NFFESFVSVRVVQP 694 (695)
Q Consensus 675 ~v~~~~---------~h~~~VtsVaf~sP 694 (695)
.+..+. .|. .||.+.| .|
T Consensus 485 ~~~~~~I~~~~~Kk~~~~-rITG~Q~-~p 511 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGK-RITGLQF-FP 511 (712)
T ss_pred EEEeeeEeeccCccccCc-eeeeeEe-cC
Confidence 665443 133 7999998 76
No 43
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.8e-19 Score=197.48 Aligned_cols=202 Identities=18% Similarity=0.321 Sum_probs=167.9
Q ss_pred cccCCCCCceEEEEecCCCccccccC--------------CccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCcccccccc
Q 005473 474 LQHNGASSKSLLMFGSDGMGSLTSAP--------------NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (695)
Q Consensus 474 l~~s~s~~~s~l~~~~dg~~~la~s~--------------~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~ 539 (695)
..+.++++..++.|...-........ ..+...++-++++|.|.+|++|....+.
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~------------ 106 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN------------ 106 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc------------
Confidence 46788899999999876542211111 1145556788999999999999765441
Q ss_pred CCCceeeeEEEecCCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEECCCCeE--E--------EEec-ccCCCeEEEEEcC
Q 005473 540 GKGFTFTEFQLIPASTSKVESCHF-SPDGKLLATGGHDKKAVLWCTESFTV--K--------STLE-EHTQWITDVRFSP 607 (695)
Q Consensus 540 ~~~~~~~~v~~l~~H~~~V~~v~f-spdg~~LaSgs~Dg~V~IWDl~t~~~--~--------~~l~-~H~~~V~~v~~sp 607 (695)
.-+..+++.|++.|.|+++ .++..++|+||-|+.|.|||+.++.. + ..+. |+...|++++..+
T Consensus 107 -----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 107 -----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred -----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 2356788999999999999 88889999999999999999997622 2 2233 8899999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEE
Q 005473 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFV 687 (695)
Q Consensus 608 dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~Vt 687 (695)
.|..|++|+..+.+++||.++.+. +..+.||...|.++..++||..+| +++.||+|++||++..+|+.++..|++.|+
T Consensus 182 t~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQrCl~T~~vH~e~VW 259 (735)
T KOG0308|consen 182 TGTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQRCLATYIVHKEGVW 259 (735)
T ss_pred cceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeeccccceeeeEEeccCceE
Confidence 999999999999999999999776 677789999999999999999666 999999999999999999999999999999
Q ss_pred EEEEeCCC
Q 005473 688 SVRVVQPR 695 (695)
Q Consensus 688 sVaf~sPd 695 (695)
++.. +|+
T Consensus 260 aL~~-~~s 266 (735)
T KOG0308|consen 260 ALQS-SPS 266 (735)
T ss_pred EEee-CCC
Confidence 9987 664
No 44
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.82 E-value=6.1e-19 Score=189.55 Aligned_cols=164 Identities=24% Similarity=0.418 Sum_probs=143.5
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 005473 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (695)
Q Consensus 508 ~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~ 587 (695)
.+++|+.|.+|.+| .+.+++...+++.|...|.|+.|+|||+++++++.||+|.|||-.++
T Consensus 162 Ri~T~sdDn~v~ff-------------------eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg 222 (603)
T KOG0318|consen 162 RIATGSDDNTVAFF-------------------EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG 222 (603)
T ss_pred EEEeccCCCeEEEe-------------------eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc
Confidence 47889999999998 45566777888999999999999999999999999999999999999
Q ss_pred eEEEEec---ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---------------------------------
Q 005473 588 TVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--------------------------------- 631 (695)
Q Consensus 588 ~~~~~l~---~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~--------------------------------- 631 (695)
+.+..+. +|.+.|++++|+||+..|+|++.|+++||||+.+.+.
T Consensus 223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i 302 (603)
T KOG0318|consen 223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI 302 (603)
T ss_pred cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence 9999997 8999999999999999999999999999999976431
Q ss_pred ---------eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE-ecCCCcEEEEEE
Q 005473 632 ---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KNFFESFVSVRV 691 (695)
Q Consensus 632 ---------~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~-~~h~~~VtsVaf 691 (695)
++.++.||...|+++..+|+++ .|++|+.||.|.-||+.+|.+-+.. ++|+.-|.+++-
T Consensus 303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~ 371 (603)
T KOG0318|consen 303 NYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAA 371 (603)
T ss_pred EEecccCCChhheecccccceeEEEEcCCCC-EEEeeccCceEEEEecCCccccccccccccceEEEEee
Confidence 1234569999999999999997 5669999999999999998776665 578777777764
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.2e-19 Score=203.76 Aligned_cols=167 Identities=22% Similarity=0.405 Sum_probs=149.7
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
.++.++-..|.|.+|+..-+ ..+..+..|.++|..|+|+|...+++|||+|.+|+||+.++
T Consensus 22 PwILtslHsG~IQlWDYRM~-------------------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 22 PWILTSLHSGVIQLWDYRMG-------------------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred CEEEEeecCceeeeehhhhh-------------------hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 78999999999999976433 34566789999999999999999999999999999999999
Q ss_pred CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 005473 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (695)
Q Consensus 587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir 666 (695)
.+|+.++.||-+.|..+.|++.-.+++++|+|-+||||+..+.+ |+.+++||...|+|..|||... +++|++-|-+||
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVR 160 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVR 160 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCccc-eEEEecccceEE
Confidence 99999999999999999999999999999999999999999855 6999999999999999999866 888999999999
Q ss_pred EEECCC--------C-------------------eEE--EEEecCCCcEEEEEEeCCC
Q 005473 667 YWSINN--------G-------------------SCA--GVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 667 iWDl~t--------g-------------------~~v--~~~~~h~~~VtsVaf~sPd 695 (695)
|||+.. + .++ ..+.||...|..++| ||.
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf-hpT 217 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF-HPT 217 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe-cCC
Confidence 999841 1 112 356699999999999 983
No 46
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.82 E-value=1.4e-18 Score=208.33 Aligned_cols=167 Identities=24% Similarity=0.304 Sum_probs=145.0
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl 584 (695)
..++++++.|++|++|+.... ..+..+.+|.+.|++|+|+| ++.+|++|+.|++|+|||+
T Consensus 545 ~~~las~~~Dg~v~lWd~~~~-------------------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~ 605 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVARS-------------------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCC-------------------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC
Confidence 478999999999999965322 34567789999999999997 7899999999999999999
Q ss_pred CCCeEEEEecccCCCeEEEEEc-CCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473 585 ESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (695)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~v~~s-pdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg 663 (695)
+++.++..+..| ..|.++.|+ +++.+|++|+.|++|++||+++.+.++..+.+|...|.++.|. ++. +|++++.|+
T Consensus 606 ~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~ 682 (793)
T PLN00181 606 NQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDN 682 (793)
T ss_pred CCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCC
Confidence 999998888754 679999995 4689999999999999999998765677888999999999997 555 677999999
Q ss_pred cEEEEECCC------CeEEEEEecCCCcEEEEEEeCCC
Q 005473 664 EIRYWSINN------GSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 664 ~IriWDl~t------g~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+|+|||++. ..++..+.+|...|.+++| +|+
T Consensus 683 ~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~-s~~ 719 (793)
T PLN00181 683 TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL-SVS 719 (793)
T ss_pred EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE-cCC
Confidence 999999974 3678899999999999999 874
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.82 E-value=2.5e-18 Score=173.76 Aligned_cols=168 Identities=29% Similarity=0.488 Sum_probs=147.8
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~ 585 (695)
..++++++.|+.|.+|+.... ..+..+..|...|.+++|++++.+|++++.|+.|++||++
T Consensus 105 ~~~~~~~~~~~~i~~~~~~~~-------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 105 GRILSSSSRDKTIKVWDVETG-------------------KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165 (289)
T ss_pred CCEEEEecCCCeEEEEECCCc-------------------EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence 378888888999999965321 3445566888999999999999999998889999999999
Q ss_pred CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 005473 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (695)
Q Consensus 586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~I 665 (695)
+++.+..+..|...|.+++|+|++..+++++.|+.|++||++.+.. +..+..|...|.+++|+|++. ++++++.||.|
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i 243 (289)
T cd00200 166 TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC-LGTLRGHENGVNSVAFSPDGY-LLASGSEDGTI 243 (289)
T ss_pred ccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce-ecchhhcCCceEEEEEcCCCc-EEEEEcCCCcE
Confidence 9999989999999999999999999999999999999999997554 777778999999999999954 77788889999
Q ss_pred EEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 666 RYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 666 riWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
++||+.+++++..+.+|...|.+++| +|+
T Consensus 244 ~i~~~~~~~~~~~~~~~~~~i~~~~~-~~~ 272 (289)
T cd00200 244 RVWDLRTGECVQTLSGHTNSVTSLAW-SPD 272 (289)
T ss_pred EEEEcCCceeEEEccccCCcEEEEEE-CCC
Confidence 99999999999999999999999999 874
No 48
>PTZ00420 coronin; Provisional
Probab=99.82 E-value=1.9e-18 Score=196.78 Aligned_cols=140 Identities=19% Similarity=0.246 Sum_probs=120.7
Q ss_pred eeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe--------EEEEecccCCCeEEEEEcCCCCE-EEEE
Q 005473 546 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSR-LATS 615 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fspd-g~~LaSgs~Dg~V~IWDl~t~~--------~~~~l~~H~~~V~~v~~spdg~~-LaTg 615 (695)
..+..+.+|.+.|.+|+|+|+ +.+|++|+.|++|+|||+.++. ++..+.+|...|.+|+|+|++.. |+++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 356788999999999999997 7899999999999999997542 34567899999999999998775 5789
Q ss_pred eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEE
Q 005473 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVS 688 (695)
Q Consensus 616 s~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~Vts 688 (695)
+.|++|+|||++++.. +..+. |...|.+++|+|+|. +|++++.|+.|+|||+++++++.++.+|.+.+.+
T Consensus 145 S~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s 214 (568)
T PTZ00420 145 GFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNT 214 (568)
T ss_pred eCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCcee
Confidence 9999999999998764 45554 567899999999998 6678888999999999999999999999876544
No 49
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.81 E-value=9.3e-19 Score=194.44 Aligned_cols=167 Identities=28% Similarity=0.445 Sum_probs=144.1
Q ss_pred cEEEEeeCC-CcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473 507 RFVDDGSLD-DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (695)
Q Consensus 507 ~~lasgS~D-~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~ 585 (695)
++++.|+.. +-+.+|..... ..+....+|...|+|++++|||.+||+|+.||+|+|||+.
T Consensus 320 DWiA~g~~klgQLlVweWqsE-------------------sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 320 DWIAFGCSKLGQLLVWEWQSE-------------------SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ 380 (893)
T ss_pred CEEEEcCCccceEEEEEeecc-------------------ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence 677777643 67777744322 3455667999999999999999999999999999999999
Q ss_pred CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCeEEEEEeCCC-
Q 005473 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNS- 663 (695)
Q Consensus 586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~-~~V~sl~fspdg~~llaSgs~Dg- 663 (695)
.+-|..++..|+..|+.+.|+..++.|+++|-||+||.||+...+ +.++|.... -...||+..|.|. ++++|+.|.
T Consensus 381 SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr-NfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F 458 (893)
T KOG0291|consen 381 SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR-NFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSF 458 (893)
T ss_pred CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc-eeeeecCCCceeeeEEEEcCCCC-EEEeeccceE
Confidence 999999999999999999999999999999999999999999755 478887654 2357888899887 777887665
Q ss_pred cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 664 EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 664 ~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
.|.||++.+|+.+..+.||.+||.+++| +|.
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f-~~~ 489 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSF-SPD 489 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEE-ccc
Confidence 6999999999999999999999999999 884
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=8.1e-19 Score=197.19 Aligned_cols=202 Identities=19% Similarity=0.360 Sum_probs=168.6
Q ss_pred ccccCCCCCceEEEEecCCCccccccCC--------ccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCce
Q 005473 473 TLQHNGASSKSLLMFGSDGMGSLTSAPN--------QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (695)
Q Consensus 473 ~l~~s~s~~~s~l~~~~dg~~~la~s~~--------~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~ 544 (695)
.++.+|.++..+..|+-+...++..-.. .|+..-.|+.++|.|-+|++|+....
T Consensus 64 plFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr------------------ 125 (1202)
T KOG0292|consen 64 PLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR------------------ 125 (1202)
T ss_pred CeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC------------------
Confidence 4566777888888888776544333221 24555578999999999999966433
Q ss_pred eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------C---------------------eEEEEecc
Q 005473 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--------F---------------------TVKSTLEE 595 (695)
Q Consensus 545 ~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t--------~---------------------~~~~~l~~ 595 (695)
+++.+++||.-.|.|..|+|...+|+||+-|-+|||||+.. + -....++|
T Consensus 126 -~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 126 -KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred -ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence 67899999999999999999999999999999999999842 1 12356789
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe
Q 005473 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (695)
Q Consensus 596 H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~-~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~ 674 (695)
|...|+.++|+|.-.+|++|++|+.|++|.+...+ .-+-++.||...|.|+-|||... ++.|.++|++|||||+...+
T Consensus 205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred cccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEeccccc
Confidence 99999999999999999999999999999997644 33678899999999999999866 67799999999999999999
Q ss_pred EEEEEecCCCcEEEEEEeCCC
Q 005473 675 CAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 675 ~v~~~~~h~~~VtsVaf~sPd 695 (695)
++.+|+-..+..+.|+- ||.
T Consensus 284 ~v~tfrrendRFW~laa-hP~ 303 (1202)
T KOG0292|consen 284 SVQTFRRENDRFWILAA-HPE 303 (1202)
T ss_pred ceeeeeccCCeEEEEEe-cCC
Confidence 99999977788899998 884
No 51
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.81 E-value=2.3e-19 Score=199.21 Aligned_cols=169 Identities=22% Similarity=0.343 Sum_probs=145.4
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCT 584 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg-~~LaSgs~Dg~V~IWDl 584 (695)
..++++||.|.++++|..+++. ....++....+|+..|.+|+++..+ .+|++++.|+++++|++
T Consensus 377 g~llat~sKD~svilWr~~~~~---------------~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l 441 (775)
T KOG0319|consen 377 GDLLATGSKDKSVILWRLNNNC---------------SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL 441 (775)
T ss_pred CcEEEEecCCceEEEEEecCCc---------------chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence 3599999999999999663331 2234556667999999999997755 48999999999999999
Q ss_pred CCCeE-----E----EEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeE
Q 005473 585 ESFTV-----K----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (695)
Q Consensus 585 ~t~~~-----~----~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~l 655 (695)
...+. + .+...|...|+||+++|+..+++|||.|++.+||++.... .+.++.||...|+||.|+|... +
T Consensus 442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-l~~vLsGH~RGvw~V~Fs~~dq-~ 519 (775)
T KOG0319|consen 442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-LLGVLSGHTRGVWCVSFSKNDQ-L 519 (775)
T ss_pred CCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-EEEEeeCCccceEEEEeccccc-e
Confidence 76221 1 1335799999999999999999999999999999999655 4899999999999999999876 8
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473 656 LCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 656 laSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf 691 (695)
+++|+.|++|+||.+.+.+|+.+|.||+..|..+.|
T Consensus 520 laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F 555 (775)
T KOG0319|consen 520 LATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASF 555 (775)
T ss_pred eEeccCCceEEEEEeccceeeeeecCccceeEeeee
Confidence 889999999999999999999999999999999988
No 52
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=6.5e-19 Score=184.59 Aligned_cols=190 Identities=18% Similarity=0.345 Sum_probs=152.7
Q ss_pred cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC
Q 005473 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (695)
Q Consensus 474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~ 553 (695)
+...+.+.+--+.|+++| +++|+++.|.+.-+|.+..+. .++..+++.+
T Consensus 219 il~~htdEVWfl~FS~nG---------------kyLAsaSkD~Taiiw~v~~d~----------------~~kl~~tlvg 267 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNG---------------KYLASASKDSTAIIWIVVYDV----------------HFKLKKTLVG 267 (519)
T ss_pred hHhhCCCcEEEEEEcCCC---------------eeEeeccCCceEEEEEEecCc----------------ceeeeeeeec
Confidence 455677788889999888 799999999999999664431 2567889999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Q 005473 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP--- 629 (695)
Q Consensus 554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~-~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~--- 629 (695)
|..+|.-+.||||.++|++|+.|..+++||+.++.+.+.+. +|...+.+++|.|||..+++|+.|++|..||++..
T Consensus 268 h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~ 347 (519)
T KOG0293|consen 268 HSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG 347 (519)
T ss_pred ccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhh
Confidence 99999999999999999999999999999999999887773 45688999999999999999999999999998631
Q ss_pred -------------------CeeEEE------------------EecCCCCeEEEEEec----------------------
Q 005473 630 -------------------DYSLRT------------------FTGHSTTVMSLDFHP---------------------- 650 (695)
Q Consensus 630 -------------------~~~l~~------------------~~gh~~~V~sl~fsp---------------------- 650 (695)
+..+.. +......|+++.++.
T Consensus 348 ~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 348 NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred cccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh
Confidence 100000 000112233333333
Q ss_pred ----------------------CCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 651 ----------------------SKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 651 ----------------------dg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
....++++|++|+.|+||+..+|+++.++.||+..|.+|+| +|.
T Consensus 428 ~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVsw-NP~ 493 (519)
T KOG0293|consen 428 KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSW-NPA 493 (519)
T ss_pred hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEec-CCC
Confidence 22347799999999999999999999999999999999999 983
No 53
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3.3e-20 Score=205.22 Aligned_cols=169 Identities=22% Similarity=0.423 Sum_probs=156.2
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (695)
Q Consensus 505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl 584 (695)
.+.+|+.|+.|++|++|+.... ..+++|.+|...+..|.|+|-+.|+++|+.|+.++|||+
T Consensus 81 ~E~LlaagsasgtiK~wDleeA-------------------k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~ 141 (825)
T KOG0267|consen 81 SERLLAAGSASGTIKVWDLEEA-------------------KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI 141 (825)
T ss_pred chhhhcccccCCceeeeehhhh-------------------hhhhhhhccccCcceeeeccceEEeccccccccceehhh
Confidence 3478999999999999976432 355688999999999999999999999999999999999
Q ss_pred CCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (695)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~ 664 (695)
+...|.+.+.+|...|.+++|+|+|+++++|+.|.+|+|||+..++. +..|.+|.+.|.+++|||.. .++++|+.|++
T Consensus 142 Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~-~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~t 219 (825)
T KOG0267|consen 142 RKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL-SKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRT 219 (825)
T ss_pred hccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccc-ccccccccccccccccCchh-hhhccCCCCce
Confidence 98899999999999999999999999999999999999999998775 89999999999999999984 59999999999
Q ss_pred EEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 665 IRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 665 IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
|++||+++.+.+...+....+|.+++| +|+
T Consensus 220 v~f~dletfe~I~s~~~~~~~v~~~~f-n~~ 249 (825)
T KOG0267|consen 220 VRFWDLETFEVISSGKPETDGVRSLAF-NPD 249 (825)
T ss_pred eeeeccceeEEeeccCCccCCceeeee-cCC
Confidence 999999999999999988999999999 885
No 54
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.81 E-value=1.3e-18 Score=187.10 Aligned_cols=185 Identities=21% Similarity=0.447 Sum_probs=156.0
Q ss_pred CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCC------------------------------C
Q 005473 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD------------------------------A 527 (695)
Q Consensus 478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~------------------------------~ 527 (695)
++...++..|+|.| .|+++|...|+|++|+.... +
T Consensus 58 H~~~vtVAkySPsG---------------~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avG 122 (603)
T KOG0318|consen 58 HAHQVTVAKYSPSG---------------FYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVG 122 (603)
T ss_pred ccceeEEEEeCCCc---------------eEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEe
Confidence 45566666666655 79999999999999977552 2
Q ss_pred CCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEc
Q 005473 528 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606 (695)
Q Consensus 528 ~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~s 606 (695)
++++++++......+ ..+..+.+|...|++|+|-|..- .+++|++|++|.+|.-...+...++..|...|.|++|+
T Consensus 123 EGrerfg~~F~~DSG---~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRys 199 (603)
T KOG0318|consen 123 EGRERFGHVFLWDSG---NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYS 199 (603)
T ss_pred cCccceeEEEEecCC---CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEEC
Confidence 345555555444444 33566789999999999998766 69999999999999999899999999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeEEEEe---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF 682 (695)
Q Consensus 607 pdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~---gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h 682 (695)
|||.+++|++.||+|.+||=.+++. +..+. +|.+.|.+|.|+||+..++ +++.|.+++|||+.++++++++.-.
T Consensus 200 PDG~~Fat~gsDgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 200 PDGSRFATAGSDGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred CCCCeEEEecCCccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecC
Confidence 9999999999999999999999875 77777 8999999999999998555 9999999999999999999988743
No 55
>PTZ00420 coronin; Provisional
Probab=99.80 E-value=1e-17 Score=190.87 Aligned_cols=176 Identities=14% Similarity=0.199 Sum_probs=135.7
Q ss_pred CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (695)
Q Consensus 477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~ 556 (695)
.+...+..+.|+|+.. .++++|+.|++|++|+...+.... .....++..+.+|..
T Consensus 72 gH~~~V~~lafsP~~~--------------~lLASgS~DgtIrIWDi~t~~~~~-----------~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 72 GHTSSILDLQFNPCFS--------------EILASGSEDLTIRVWEIPHNDESV-----------KEIKDPQCILKGHKK 126 (568)
T ss_pred CCCCCEEEEEEcCCCC--------------CEEEEEeCCCeEEEEECCCCCccc-----------cccccceEEeecCCC
Confidence 3456677777777532 789999999999999876432100 000124456789999
Q ss_pred CeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473 557 KVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (695)
Q Consensus 557 ~V~~v~fspdg~~-LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~ 635 (695)
.|.+|+|+|++.. |++|+.|++|+|||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||++++.. +..
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~-i~t 204 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI-ASS 204 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE-EEE
Confidence 9999999999875 5789999999999999998877775 668899999999999999999999999999998764 788
Q ss_pred EecCCCCeEEE-----EEecCCCeEEEEEeCC----CcEEEEECCC-CeEEEEEe
Q 005473 636 FTGHSTTVMSL-----DFHPSKEDLLCSCDNN----SEIRYWSINN-GSCAGVFK 680 (695)
Q Consensus 636 ~~gh~~~V~sl-----~fspdg~~llaSgs~D----g~IriWDl~t-g~~v~~~~ 680 (695)
+.+|.+.+.+. .|++++..++ +++.| +.|+|||+++ ++++..+.
T Consensus 205 l~gH~g~~~s~~v~~~~fs~d~~~Il-TtG~d~~~~R~VkLWDlr~~~~pl~~~~ 258 (568)
T PTZ00420 205 FHIHDGGKNTKNIWIDGLGGDDNYIL-STGFSKNNMREMKLWDLKNTTSALVTMS 258 (568)
T ss_pred EecccCCceeEEEEeeeEcCCCCEEE-EEEcCCCCccEEEEEECCCCCCceEEEE
Confidence 99998765433 3457877555 55444 4799999995 66676654
No 56
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.80 E-value=1.1e-18 Score=198.16 Aligned_cols=178 Identities=21% Similarity=0.373 Sum_probs=155.2
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCC------------------------CCCccccccccCCCceeeeEEEecCCCCCeEE
Q 005473 505 MDRFVDDGSLDDNVESFLSPDDAD------------------------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (695)
Q Consensus 505 ~~~~lasgS~D~~V~lw~~~~~~~------------------------~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~ 560 (695)
.+.++++|+.|.++++|+..++.. .+|...++|+...+ ..+.++.+|.++|.|
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~---~~l~l~~~h~~~V~~ 336 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNG---ACLNLLRGHTGPVNC 336 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCc---ceEEEeccccccEEE
Confidence 368889999999999998766631 25666677777755 567778889999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC
Q 005473 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 640 (695)
Q Consensus 561 v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~ 640 (695)
+.++ +.++++|+.|++|+|||+.++++++++.+|++.|+++.+... .++++|+.|++|++||+++...|+.++.+|.
T Consensus 337 v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~ 413 (537)
T KOG0274|consen 337 VQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHT 413 (537)
T ss_pred EEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCc
Confidence 9998 889999999999999999999999999999999999988765 8999999999999999998745799999999
Q ss_pred CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec-CCCcEEEEEE
Q 005473 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN-FFESFVSVRV 691 (695)
Q Consensus 641 ~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~-h~~~VtsVaf 691 (695)
+-|.++.+.. . ++++++.|++|++||..+++|++++.+ |...|+++++
T Consensus 414 ~~v~~l~~~~--~-~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~ 462 (537)
T KOG0274|consen 414 SLVSSLLLRD--N-FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALAL 462 (537)
T ss_pred cccccccccc--c-eeEeccccccEEEeecccCceeeeeccCCcccEEEeec
Confidence 9997777653 3 677999999999999999999999998 7788888876
No 57
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.80 E-value=5.8e-18 Score=203.16 Aligned_cols=184 Identities=15% Similarity=0.278 Sum_probs=145.6
Q ss_pred CCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 005473 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (695)
Q Consensus 479 s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V 558 (695)
...+..+.|++++ +++++|+.|++|++|+....... .... ..++..+. +...|
T Consensus 483 ~~~V~~i~fs~dg---------------~~latgg~D~~I~iwd~~~~~~~----------~~~~-~~~~~~~~-~~~~v 535 (793)
T PLN00181 483 SNLVCAIGFDRDG---------------EFFATAGVNKKIKIFECESIIKD----------GRDI-HYPVVELA-SRSKL 535 (793)
T ss_pred CCcEEEEEECCCC---------------CEEEEEeCCCEEEEEECCccccc----------cccc-ccceEEec-ccCce
Confidence 3445556666554 78999999999999976431100 0000 01122233 34579
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473 559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTF 636 (695)
Q Consensus 559 ~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~ 636 (695)
.+++|++ ++.+|++++.||+|+|||+.+++.+..+.+|.+.|++++|+| ++.+|+||+.|++|++||++++. ++..+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~ 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTI 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEE
Confidence 9999987 478999999999999999999999999999999999999997 78899999999999999999865 46777
Q ss_pred ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe-EEEEEecCCCcEEEEEE
Q 005473 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKNFFESFVSVRV 691 (695)
Q Consensus 637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~-~v~~~~~h~~~VtsVaf 691 (695)
..+ ..|+++.|++....+|++|+.||.|++||+++++ ++..+.+|...|++|+|
T Consensus 615 ~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f 669 (793)
T PLN00181 615 KTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF 669 (793)
T ss_pred ecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEE
Confidence 654 6799999976544578899999999999998865 67788899999999999
No 58
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.79 E-value=5.4e-18 Score=175.82 Aligned_cols=154 Identities=20% Similarity=0.319 Sum_probs=140.3
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~ 585 (695)
.+++++|+.|....+|....+. ....+.+|++.|+|+.|+.||.+||||+.+|.|+||.+.
T Consensus 76 ~~l~aTGGgDD~AflW~~~~ge-------------------~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 76 NNLVATGGGDDLAFLWDISTGE-------------------FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred CceEEecCCCceEEEEEccCCc-------------------ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 3899999999999999765542 456788999999999999999999999999999999999
Q ss_pred CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 005473 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (695)
Q Consensus 586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~I 665 (695)
++.....+......|.-++|+|.+..|+.|+.||.|.+|.+.+... .+.+.||...+++-.|.|+|+. ++++..||+|
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~-~kv~~Gh~~~ct~G~f~pdGKr-~~tgy~dgti 214 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL-CKVMSGHNSPCTCGEFIPDGKR-ILTGYDDGTI 214 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce-eeEecCCCCCcccccccCCCce-EEEEecCceE
Confidence 9999988876678899999999999999999999999999998654 7999999999999999999995 5599999999
Q ss_pred EEEECCCCeEEEEEe
Q 005473 666 RYWSINNGSCAGVFK 680 (695)
Q Consensus 666 riWDl~tg~~v~~~~ 680 (695)
++||++++.++.++.
T Consensus 215 ~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKIT 229 (399)
T ss_pred EEEecCCCceeEEec
Confidence 999999999998887
No 59
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.79 E-value=1.6e-18 Score=184.27 Aligned_cols=179 Identities=17% Similarity=0.296 Sum_probs=151.0
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTE 585 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~ 585 (695)
.+|++++..+.|.+|+...........+ .+.+-..|.+|...-+.++|++... .|++|+.|++|++||+.
T Consensus 138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~ 208 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYTKHPSKPKASG---------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDIN 208 (422)
T ss_pred cEEEecCCCCCEEEEEeccCCCcccccc---------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEecc
Confidence 7899999999999998765533211111 3456678899999889999998654 78999999999999996
Q ss_pred CC-------eEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CCeeEEEEecCCCCeEEEEEecCCCeEE
Q 005473 586 SF-------TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (695)
Q Consensus 586 t~-------~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t-~~~~l~~~~gh~~~V~sl~fspdg~~ll 656 (695)
.. .+...+.+|.+.|.+++|++ +..+|++++.|+.+.|||+|+ ...+.....+|.+.|.|++|+|-+..+|
T Consensus 209 ~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~il 288 (422)
T KOG0264|consen 209 AESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFIL 288 (422)
T ss_pred ccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceE
Confidence 43 24567799999999999999 466789999999999999996 3345678889999999999999999999
Q ss_pred EEEeCCCcEEEEECCC-CeEEEEEecCCCcEEEEEEeCCC
Q 005473 657 CSCDNNSEIRYWSINN-GSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 657 aSgs~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sPd 695 (695)
|+|+.|++|.+||+|+ .+++.++.+|.+.|..|.| +|.
T Consensus 289 AT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~W-SPh 327 (422)
T KOG0264|consen 289 ATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEW-SPH 327 (422)
T ss_pred EeccCCCcEEEeechhcccCceeccCCCcceEEEEe-CCC
Confidence 9999999999999997 5689999999999999999 995
No 60
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.4e-17 Score=162.88 Aligned_cols=194 Identities=24% Similarity=0.292 Sum_probs=144.5
Q ss_pred CCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 005473 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (695)
Q Consensus 479 s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V 558 (695)
+..+..+.|+|.| .+.+.|+...+.++...+.-.+.+. .+ ...+-......+.-+.|++.|
T Consensus 32 sqairav~fhp~g---------------~lyavgsnskt~ric~yp~l~~~r~--~h--ea~~~pp~v~~kr~khhkgsi 92 (350)
T KOG0641|consen 32 SQAIRAVAFHPAG---------------GLYAVGSNSKTFRICAYPALIDLRH--AH--EAAKQPPSVLCKRNKHHKGSI 92 (350)
T ss_pred hhheeeEEecCCC---------------ceEEeccCCceEEEEccccccCccc--cc--ccccCCCeEEeeeccccCccE
Confidence 3456667777766 6778999999999986654333221 11 111112223345567899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCC----------------------------------------------------
Q 005473 559 ESCHFSPDGKLLATGGHDKKAVLWCTES---------------------------------------------------- 586 (695)
Q Consensus 559 ~~v~fspdg~~LaSgs~Dg~V~IWDl~t---------------------------------------------------- 586 (695)
+|++|+|+|.+|++|++|++|++.-.+.
T Consensus 93 yc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 93 YCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred EEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence 9999999999999999999999874421
Q ss_pred CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec--C-----CCCeEEEEEecCCCeEEEEE
Q 005473 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--H-----STTVMSLDFHPSKEDLLCSC 659 (695)
Q Consensus 587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g--h-----~~~V~sl~fspdg~~llaSg 659 (695)
+.....+.+|++-|.++ ++.++-.+++|+.|.+||+||++-.. |+.++.. | .+.|.+|+..|.|+ ++++|
T Consensus 173 g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg 249 (350)
T KOG0641|consen 173 GQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASG 249 (350)
T ss_pred CCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCCcc-eeeec
Confidence 12223344566666555 34456789999999999999999754 5665532 1 25799999999998 88899
Q ss_pred eCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 660 DNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 660 s~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
-.|....+||++.+..+..|..|+..|.+|+| +|.
T Consensus 250 ~~dssc~lydirg~r~iq~f~phsadir~vrf-sp~ 284 (350)
T KOG0641|consen 250 HADSSCMLYDIRGGRMIQRFHPHSADIRCVRF-SPG 284 (350)
T ss_pred cCCCceEEEEeeCCceeeeeCCCccceeEEEe-CCC
Confidence 99999999999999999999999999999999 984
No 61
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=6.1e-19 Score=199.07 Aligned_cols=142 Identities=27% Similarity=0.417 Sum_probs=123.6
Q ss_pred EEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----------------------------------------
Q 005473 549 QLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----------------------------------------- 586 (695)
Q Consensus 549 ~~l~-~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t----------------------------------------- 586 (695)
..+. +|.+.|.|+.||+||+|||+||.|+.|+||-+..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4455 8999999999999999999999999999996532
Q ss_pred -------------------CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEE
Q 005473 587 -------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (695)
Q Consensus 587 -------------------~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~ 647 (695)
.++++.+.||.+.|.++.|+.+ .+|+++|.|+|||+|++.. +.|+++|. |...|+||+
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVTCVA 416 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCC-cceeeEEe-cCCeeEEEE
Confidence 1233446689999999999976 6999999999999999996 55799987 999999999
Q ss_pred EecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 648 fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
|+|....+|++|+-||.||||++...+.+.....+ +-||+|+| .||
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy-~Pd 462 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCY-SPD 462 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEe-ccC
Confidence 99988889999999999999999987777666555 88999999 996
No 62
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=7.2e-18 Score=166.18 Aligned_cols=200 Identities=17% Similarity=0.244 Sum_probs=141.9
Q ss_pred cccCCCCCceEEEEecCCCccccccCC--------ccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCcee
Q 005473 474 LQHNGASSKSLLMFGSDGMGSLTSAPN--------QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (695)
Q Consensus 474 l~~s~s~~~s~l~~~~dg~~~la~s~~--------~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~ 545 (695)
.-+....++++..|+|.....+..-.. .+.....-+++|+.|.-|.+|++..+
T Consensus 31 Y~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG------------------- 91 (307)
T KOG0316|consen 31 YCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG------------------- 91 (307)
T ss_pred EEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC-------------------
Confidence 344567889999999876533222111 01112234566667777777755443
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEeccc---------------------------
Q 005473 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEH--------------------------- 596 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~--~~~~~l~~H--------------------------- 596 (695)
+.++.+++|.+.|+.|.|+.+...+++|+.|.+|++||++.. +++.++..-
T Consensus 92 kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtyd 171 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYD 171 (307)
T ss_pred eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEE
Confidence 567788999999999999999999999999999999999752 333333222
Q ss_pred -----------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE--EEecCCCeEEEEEeCCC
Q 005473 597 -----------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL--DFHPSKEDLLCSCDNNS 663 (695)
Q Consensus 597 -----------~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl--~fspdg~~llaSgs~Dg 663 (695)
..+|+|++|++++..++.++.|++||+.|-.+++. +..+.||...-..+ ++.... ..+++|++||
T Consensus 172 iR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl-L~sYkGhkn~eykldc~l~qsd-thV~sgSEDG 249 (307)
T KOG0316|consen 172 IRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL-LKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDG 249 (307)
T ss_pred eecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHH-HHHhcccccceeeeeeeecccc-eeEEeccCCc
Confidence 34567777777777777777777777777766654 66677776544433 333333 3567999999
Q ss_pred cEEEEECCCCeEEEEEecCCCc-EEEEEEeCCC
Q 005473 664 EIRYWSINNGSCAGVFKNFFES-FVSVRVVQPR 695 (695)
Q Consensus 664 ~IriWDl~tg~~v~~~~~h~~~-VtsVaf~sPd 695 (695)
.|++||+-....+..+..|... |++|+| ||.
T Consensus 250 ~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~-hp~ 281 (307)
T KOG0316|consen 250 KVYFWDLVDETQISKLSVVSTVIVTDLSC-HPT 281 (307)
T ss_pred eEEEEEeccceeeeeeccCCceeEEeeec-ccC
Confidence 9999999999999999999888 899999 984
No 63
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=1.3e-19 Score=200.41 Aligned_cols=170 Identities=23% Similarity=0.390 Sum_probs=154.1
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (695)
Q Consensus 504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD 583 (695)
...+++++|++|..+-+|..... ..+..+.+|..+|.||.|+.+..+|+.|+.||+|++||
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp-------------------~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKP-------------------NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred ccceeeccCCCceeeccccccCC-------------------chhheeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence 33488999999999989944221 23345889999999999999999999999999999999
Q ss_pred CCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (695)
Q Consensus 584 l~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg 663 (695)
++..+.++++.+|...+..|.|+|-+.++++|+.|+.+++||++..+ |...+.+|...|.++.|+|+|. ++++|++|.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~ 176 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRVVDVLRLSPDGR-WVASGGEDN 176 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC-ceeeecCCcceeEEEeecCCCc-eeeccCCcc
Confidence 99999999999999999999999999999999999999999999744 7999999999999999999998 677999999
Q ss_pred cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 664 EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 664 ~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+|+|||+..|+.+..|+.|.+.|.++.| ||.
T Consensus 177 tvki~d~~agk~~~ef~~~e~~v~sle~-hp~ 207 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKSHEGKVQSLEF-HPL 207 (825)
T ss_pred eeeeeccccccccccccccccccccccc-Cch
Confidence 9999999999999999999999999999 983
No 64
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.78 E-value=7.5e-18 Score=191.23 Aligned_cols=163 Identities=23% Similarity=0.379 Sum_probs=146.0
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEE-ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~-l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl 584 (695)
+.++.+++.|.++++|+...+ ..+.. +.+|.+.|.++.|..-+.+|++|+.|++++|||+
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~-------------------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNG-------------------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred cCeEEecCCCceeEEeecccc-------------------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 478899999999999954322 34445 8999999999999887889999999999999999
Q ss_pred CCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (695)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~ 664 (695)
.+++|..++.+|.+.|.++...+ .++++|+.|.+|+||++.++. ++.++.+|.+.|.+|.++ ++ ++++|+.|++
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~ 352 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD--EP-LLVSGSYDGT 352 (537)
T ss_pred CCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec--CC-EEEEEecCce
Confidence 99999999999999999998864 578889999999999999866 589999999999999998 33 7889999999
Q ss_pred EEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 665 IRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 665 IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
|+|||+.+++|+.++.+|+..|+++.| .+
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~-~~ 381 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIV-DS 381 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEe-cC
Confidence 999999999999999999999999987 54
No 65
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.78 E-value=1.1e-17 Score=167.61 Aligned_cols=185 Identities=15% Similarity=0.235 Sum_probs=161.3
Q ss_pred ccccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEec
Q 005473 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (695)
Q Consensus 473 ~l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~ 552 (695)
.+...+.++.+-+.|+.+| .++.+++.|.++.+|.+.++ ..+.++.
T Consensus 4 i~l~GHERplTqiKyN~eG---------------DLlFscaKD~~~~vw~s~nG-------------------erlGty~ 49 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREG---------------DLLFSCAKDSTPTVWYSLNG-------------------ERLGTYD 49 (327)
T ss_pred cccccCccccceEEecCCC---------------cEEEEecCCCCceEEEecCC-------------------ceeeeec
Confidence 3455678899999999888 78999999999999977555 3567899
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec--------------------------------------
Q 005473 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------------------------------------- 594 (695)
Q Consensus 553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~-------------------------------------- 594 (695)
+|++.|.||..+.+.+++++|+.|.++++||+++|+++..++
T Consensus 50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~ 129 (327)
T KOG0643|consen 50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRD 129 (327)
T ss_pred CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccC
Confidence 999999999999999999999999999999999887665543
Q ss_pred ---------------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEE
Q 005473 595 ---------------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (695)
Q Consensus 595 ---------------~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSg 659 (695)
.+.+.++.+-|.|-+.+|++|..||.|.+||++++...+.....|...|+.+.|++|.. +++++
T Consensus 130 ~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~ 208 (327)
T KOG0643|consen 130 DSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITG 208 (327)
T ss_pred ChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEec
Confidence 24456788889999999999999999999999998887888889999999999999987 56699
Q ss_pred eCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 660 DNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 660 s~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
+.|.+-++||+++-++++++. ...||.+.++ +|
T Consensus 209 s~Dttakl~D~~tl~v~Kty~-te~PvN~aai-sP 241 (327)
T KOG0643|consen 209 SKDTTAKLVDVRTLEVLKTYT-TERPVNTAAI-SP 241 (327)
T ss_pred ccCccceeeeccceeeEEEee-ecccccceec-cc
Confidence 999999999999999999996 4468899888 87
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=3.6e-18 Score=182.71 Aligned_cols=165 Identities=24% Similarity=0.375 Sum_probs=137.0
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 005473 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWC 583 (695)
Q Consensus 505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg-~~LaSgs~Dg~V~IWD 583 (695)
..+++++|...|.|++|+... -..+..+.+|+.+|..+.|+|.+ ..|++|++|+.+++||
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~-------------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKS-------------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD 139 (487)
T ss_pred CCeEEEccCCcCcEEEecccc-------------------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence 348899999999999995211 12346678999999999999965 4788889999999999
Q ss_pred CCCCeEEEEecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473 584 TESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (695)
Q Consensus 584 l~t~~~~~~l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D 662 (695)
+.+......+.+|++.|.|.+|+|. +.+++|||.||+||+||++.....+.++. |..+|.++.|-|.|. +|++++ .
T Consensus 140 ~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs-~iasAg-G 216 (487)
T KOG0310|consen 140 LSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGS-LIASAG-G 216 (487)
T ss_pred cCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCC-EEEEcC-C
Confidence 9998887789999999999999995 55889999999999999998755456665 889999999999988 666776 5
Q ss_pred CcEEEEECCCC-eEEEEEecCCCcEEEEEE
Q 005473 663 SEIRYWSINNG-SCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 663 g~IriWDl~tg-~~v~~~~~h~~~VtsVaf 691 (695)
..|+|||+.+| +.+..+..|...|||+++
T Consensus 217 n~vkVWDl~~G~qll~~~~~H~KtVTcL~l 246 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMFNHNKTVTCLRL 246 (487)
T ss_pred CeEEEEEecCCceehhhhhcccceEEEEEe
Confidence 68999999965 445555559999999998
No 67
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.2e-18 Score=194.30 Aligned_cols=184 Identities=18% Similarity=0.291 Sum_probs=152.7
Q ss_pred cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC
Q 005473 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (695)
Q Consensus 474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~ 553 (695)
+...+.+.+..+.|++... ++|++||.|++|++|+..... -+.++.+
T Consensus 128 ~f~EH~Rs~~~ldfh~tep--------------~iliSGSQDg~vK~~DlR~~~-------------------S~~t~~~ 174 (839)
T KOG0269|consen 128 VFNEHERSANKLDFHSTEP--------------NILISGSQDGTVKCWDLRSKK-------------------SKSTFRS 174 (839)
T ss_pred HhhhhccceeeeeeccCCc--------------cEEEecCCCceEEEEeeeccc-------------------ccccccc
Confidence 4556778888888887665 899999999999999775442 1233455
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 005473 554 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (695)
Q Consensus 554 H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t-~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~ 631 (695)
....|..|.|+| .+.+|+++.+.|.|.+||++. .++...+.+|.++|.|+.|+|+..+|||||.|++|+|||+.+.+.
T Consensus 175 nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 175 NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence 677899999999 577899999999999999975 456778899999999999999999999999999999999986553
Q ss_pred -eEEEEecCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCC-CeEEEEEecCCCcEEEEEE
Q 005473 632 -SLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINN-GSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 632 -~l~~~~gh~~~V~sl~fspdg~~llaSgs--~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf 691 (695)
.+.++. ....|.+|.|.|...+.|++|+ .|..|+|||++. .-+..+|..|++.|+.|+|
T Consensus 255 ~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W 317 (839)
T KOG0269|consen 255 KPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAW 317 (839)
T ss_pred cceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceec
Confidence 223332 3467999999999999998887 688999999975 4677889999999999999
No 68
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.78 E-value=4.9e-18 Score=188.68 Aligned_cols=183 Identities=20% Similarity=0.320 Sum_probs=151.4
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005473 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (695)
Q Consensus 503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IW 582 (695)
.+....+++||.|.+|++|+..--.+......+ -.......++ .-.+.|.|+.+||||++||.+--|.+|+||
T Consensus 463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k------~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKK------VLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred cCCCCceEEecCCcEEEEEeEEEEeccCcccce------eeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 334467899999999999965321110000000 0111122222 234569999999999999999999999999
Q ss_pred ECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (695)
Q Consensus 583 Dl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D 662 (695)
-+++.+....+.||.-+|.||..+||+.+++|||.|+.|++|-++-|. |-+.+.+|.+.|++|.|.|. .+++++|+.|
T Consensus 536 flDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD-CHKS~fAHdDSvm~V~F~P~-~~~FFt~gKD 613 (888)
T KOG0306|consen 536 FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD-CHKSFFAHDDSVMSVQFLPK-THLFFTCGKD 613 (888)
T ss_pred EecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch-hhhhhhcccCceeEEEEccc-ceeEEEecCc
Confidence 999999999999999999999999999999999999999999999766 68899999999999999996 5688899999
Q ss_pred CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 663 SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 663 g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+.|+.||-.+.+++.++.+|...|+|++. .|+
T Consensus 614 ~kvKqWDg~kFe~iq~L~~H~~ev~cLav-~~~ 645 (888)
T KOG0306|consen 614 GKVKQWDGEKFEEIQKLDGHHSEVWCLAV-SPN 645 (888)
T ss_pred ceEEeechhhhhhheeeccchheeeeeEE-cCC
Confidence 99999999999999999999999999998 875
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.6e-17 Score=177.76 Aligned_cols=165 Identities=24% Similarity=0.331 Sum_probs=139.9
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE 585 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd-g~~LaSgs~Dg~V~IWDl~ 585 (695)
..+++|+.|+.+++|+.... . ....+.+|++.|.|.+|+|- +..++||++||+|++||++
T Consensus 124 t~l~s~sDd~v~k~~d~s~a----------------~---v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 124 TMLVSGSDDKVVKYWDLSTA----------------Y---VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred eEEEecCCCceEEEEEcCCc----------------E---EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 67888988888999965332 2 35678899999999999995 4589999999999999999
Q ss_pred CC-eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473 586 SF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (695)
Q Consensus 586 t~-~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~ 664 (695)
.. ..+.++. |..+|..|.+-|.|.++++++ ...|+|||+-++...+..+..|...|+|+++..++..|+ +|+-|+.
T Consensus 185 ~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl-S~sLD~~ 261 (487)
T KOG0310|consen 185 SLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL-SGSLDRH 261 (487)
T ss_pred cCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEe-ecccccc
Confidence 87 5555554 899999999999999999987 457999999988776666666999999999999987655 9999999
Q ss_pred EEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 665 IRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 665 IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
|++||+.+-+.+..++ ..++|.+|+. +|+
T Consensus 262 VKVfd~t~~Kvv~s~~-~~~pvLsiav-s~d 290 (487)
T KOG0310|consen 262 VKVFDTTNYKVVHSWK-YPGPVLSIAV-SPD 290 (487)
T ss_pred eEEEEccceEEEEeee-cccceeeEEe-cCC
Confidence 9999999889998885 5589999998 874
No 70
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.77 E-value=1.6e-17 Score=168.66 Aligned_cols=218 Identities=17% Similarity=0.241 Sum_probs=169.3
Q ss_pred cccccCCCCCceEEEEecCCCc---------cccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCC------------
Q 005473 472 PTLQHNGASSKSLLMFGSDGMG---------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPR------------ 530 (695)
Q Consensus 472 ~~l~~s~s~~~s~l~~~~dg~~---------~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~------------ 530 (695)
-++..++..+..++.|...+.. .-++-.-.+....+.+.+++.|.+|+.|++..+...+
T Consensus 59 gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~ 138 (338)
T KOG0265|consen 59 GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSL 138 (338)
T ss_pred CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeec
Confidence 3567778888888888865541 1111111234455788899999999999887664221
Q ss_pred ---------------CccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc
Q 005473 531 ---------------DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE 595 (695)
Q Consensus 531 ---------------~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~ 595 (695)
|...++||..+. ..++++ ..+..++++.|..++..+++|+-|+.|++||++......++.|
T Consensus 139 ~p~rrg~~lv~SgsdD~t~kl~D~R~k---~~~~t~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsG 214 (338)
T KOG0265|consen 139 DPSRRGPQLVCSGSDDGTLKLWDIRKK---EAIKTF-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSG 214 (338)
T ss_pred CccccCCeEEEecCCCceEEEEeeccc---chhhcc-ccceeEEEEEecccccceeeccccCceeeeccccCcceEEeec
Confidence 122233333221 111111 2355699999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---CeeEEEEecCCC----CeEEEEEecCCCeEEEEEeCCCcEEEE
Q 005473 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHST----TVMSLDFHPSKEDLLCSCDNNSEIRYW 668 (695)
Q Consensus 596 H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~---~~~l~~~~gh~~----~V~sl~fspdg~~llaSgs~Dg~IriW 668 (695)
|.+.|+.+..+|+|.++.+-+.|.+|++||++.. ..|+..+.+|.. ....++|+|++. .+.+|+.|..|++|
T Consensus 215 h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvw 293 (338)
T KOG0265|consen 215 HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVW 293 (338)
T ss_pred ccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEe
Confidence 9999999999999999999999999999999742 346888888753 346789999987 67799999999999
Q ss_pred ECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 669 SINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 669 Dl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
|.....++..+.||.+.|.+++| ||.
T Consensus 294 d~~~r~~lyklpGh~gsvn~~~F-hp~ 319 (338)
T KOG0265|consen 294 DTTSRRILYKLPGHYGSVNEVDF-HPT 319 (338)
T ss_pred ecccccEEEEcCCcceeEEEeee-cCC
Confidence 99998999999999999999999 994
No 71
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.77 E-value=1.1e-17 Score=193.13 Aligned_cols=202 Identities=20% Similarity=0.321 Sum_probs=164.3
Q ss_pred cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (695)
Q Consensus 476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~ 555 (695)
..+...+.|+.|++|| .++|+||.|+.|.+|.... ......++..-.......++.+..+++|.
T Consensus 66 ~~h~~sv~CVR~S~dG---------------~~lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~ 129 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDG---------------SYLASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHD 129 (942)
T ss_pred ccccCceeEEEECCCC---------------CeEeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCC
Confidence 3456788999999988 7899999999999996543 11111111111122335778999999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (695)
Q Consensus 556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~ 635 (695)
..|..++|+|++.+|++++.|++|.|||..+.+++.++++|.+.|..+.|.|-|++|++-++|++|+||++.+... .+.
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i-~k~ 208 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI-EKS 208 (942)
T ss_pred CccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccccee-eEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876443 555
Q ss_pred EecCC------CCeEEEEEecCCCeEEEEEe---CCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 636 FTGHS------TTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 636 ~~gh~------~~V~sl~fspdg~~llaSgs---~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+.++. ..+..+.|+|||.+|.+.-+ .-.+|.|.+-.+-++-..|-||..+|.+++| +|.
T Consensus 209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrF-nP~ 276 (942)
T KOG0973|consen 209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRF-NPK 276 (942)
T ss_pred eccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEe-ChH
Confidence 55543 35788999999995543322 3457889998888888999999999999999 984
No 72
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.77 E-value=3.1e-18 Score=183.59 Aligned_cols=188 Identities=20% Similarity=0.225 Sum_probs=148.7
Q ss_pred CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEE--EecCC
Q 005473 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ--LIPAS 554 (695)
Q Consensus 477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~--~l~~H 554 (695)
.+....++-+|+|+.. .-+.+++.|+++++|++..... ....++ ...+.
T Consensus 266 GHia~lt~g~whP~~k--------------~~FlT~s~DgtlRiWdv~~~k~---------------q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 266 GHIAELTCGCWHPDNK--------------EEFLTCSYDGTLRIWDVNNTKS---------------QLQVIKTKPAGGK 316 (641)
T ss_pred CceeeeeccccccCcc--------------cceEEecCCCcEEEEecCCchh---------------heeEEeeccCCCc
Confidence 3445667777777665 5568889999999997754421 011111 12245
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEecccCC--CeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005473 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLEEHTQ--WITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (695)
Q Consensus 555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~---~~~l~~H~~--~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~ 629 (695)
.-+|+.|+|++||++||+|+.||.|-+|+...... .+.-.+|.. .|+||.|+++|++|++-+.|++++|||++..
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 56799999999999999999999999999854332 233367877 8999999999999999999999999999999
Q ss_pred CeeEEEEecCCC--CeEEEEEecCCCeEEEEEe------CCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 630 DYSLRTFTGHST--TVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 630 ~~~l~~~~gh~~--~V~sl~fspdg~~llaSgs------~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+.|+.++.+... .-+.++|+|+.+ ||++|. ..|.+.+||..+-..+..+.-....|..+.| ||.
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~W-hpk 468 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLW-HPK 468 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEee-cch
Confidence 988888776543 457899999987 666875 3578999999999999999888889999999 995
No 73
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.76 E-value=4e-19 Score=189.62 Aligned_cols=144 Identities=22% Similarity=0.444 Sum_probs=133.5
Q ss_pred eeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 005473 546 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t-~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrv 623 (695)
+.+.++.+|+..|+++.|.| .+.+|++|+.|+.|+||++.. ++|++++.+|..+|.+++|+.+|..|+|+|.|++|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 56788999999999999999 899999999999999999976 8999999999999999999999999999999999999
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 624 WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf 691 (695)
||++++.. +..|. ....++|+.|+|++..+|++|+.|+.|+.||+|+++.+.++..|-++|.+|.|
T Consensus 285 wDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 285 WDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITF 350 (503)
T ss_pred eccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence 99999874 66654 33568999999999889999999999999999999999999999999999998
No 74
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.76 E-value=1e-17 Score=167.25 Aligned_cols=180 Identities=22% Similarity=0.304 Sum_probs=142.8
Q ss_pred CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 005473 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (695)
Q Consensus 480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~ 559 (695)
..+..+.|..+| ..+++|+.|+++++|.+.... +..-...++|.+.|.
T Consensus 21 ~~v~Sv~wn~~g---------------~~lasgs~dktv~v~n~e~~r-----------------~~~~~~~~gh~~svd 68 (313)
T KOG1407|consen 21 QKVHSVAWNCDG---------------TKLASGSFDKTVSVWNLERDR-----------------FRKELVYRGHTDSVD 68 (313)
T ss_pred hcceEEEEcccC---------------ceeeecccCCceEEEEecchh-----------------hhhhhcccCCCcchh
Confidence 356678888877 568999999999999764431 111123456776677
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEECCCCeEE------------------------------------------------
Q 005473 560 SCHFSPD-GKLLATGGHDKKAVLWCTESFTVK------------------------------------------------ 590 (695)
Q Consensus 560 ~v~fspd-g~~LaSgs~Dg~V~IWDl~t~~~~------------------------------------------------ 590 (695)
.++|+|. ..+|++++.|++|++||++.++++
T Consensus 69 ql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~ 148 (313)
T KOG1407|consen 69 QLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF 148 (313)
T ss_pred hheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc
Confidence 7777663 346677777777777766543332
Q ss_pred ----------------------------------EEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473 591 ----------------------------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (695)
Q Consensus 591 ----------------------------------~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~ 636 (695)
..+.+|...+.||.|+|+|++||+|+.|..+.+||+.. -.|++.+
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~i 227 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCI 227 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH-hhhheee
Confidence 22336888899999999999999999999999999996 5689999
Q ss_pred ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
..+.=+|..|.|+.||+ +||+|++|..|-|=++.+|..+..++ +.++..+|+| ||.
T Consensus 228 sRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAW-HPk 283 (313)
T KOG1407|consen 228 SRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAW-HPK 283 (313)
T ss_pred ccccCceEEEEeccCcc-eeeccCccceEEeEecccCCeEEEee-ccCCceeEEe-cCC
Confidence 99999999999999998 78899999999999999999999985 6678899999 995
No 75
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.7e-18 Score=193.02 Aligned_cols=173 Identities=18% Similarity=0.361 Sum_probs=146.6
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 005473 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWC 583 (695)
Q Consensus 505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd-g~~LaSgs~Dg~V~IWD 583 (695)
.+++|++++..|.|.+|+..... .-+.+..+..|+..|+++.|++. -.+|++|+.||+|++||
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~----------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~D 162 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSI----------------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWD 162 (839)
T ss_pred hhhhheeecCCCcEEEEecCccc----------------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEe
Confidence 35899999999999999775421 11234566789999999999885 56899999999999999
Q ss_pred CCCCeEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473 584 TESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (695)
Q Consensus 584 l~t~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D 662 (695)
++..+.+.++.+....|.+|.|+| .+..|+++.+.|.+.+||+|.+..|+..+.+|.+.|.|+.|+|++. +||+||.|
T Consensus 163 lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGGRD 241 (839)
T KOG0269|consen 163 LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGGRD 241 (839)
T ss_pred eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecCCC
Confidence 999888888988899999999999 4778999999999999999999999999999999999999999765 88899999
Q ss_pred CcEEEEECCCCeEEEEEec-CCCcEEEEEEeCCC
Q 005473 663 SEIRYWSINNGSCAGVFKN-FFESFVSVRVVQPR 695 (695)
Q Consensus 663 g~IriWDl~tg~~v~~~~~-h~~~VtsVaf~sPd 695 (695)
+.|+|||+.+++.-..+.. ...+|..|+| =|.
T Consensus 242 K~vkiWd~t~~~~~~~~tInTiapv~rVkW-RP~ 274 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKW-RPA 274 (839)
T ss_pred ccEEEEeccCCCccceeEEeecceeeeeee-ccC
Confidence 9999999987654333332 3478899999 774
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.76 E-value=3.8e-17 Score=172.50 Aligned_cols=199 Identities=16% Similarity=0.221 Sum_probs=155.7
Q ss_pred cccCCCCCceEEEEecCCCccc--------cccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCcee
Q 005473 474 LQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (695)
Q Consensus 474 l~~s~s~~~s~l~~~~dg~~~l--------a~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~ 545 (695)
....|..++..+.|.......| .+..-.+......+++++.|..|++|.++..
T Consensus 233 ~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~------------------- 293 (506)
T KOG0289|consen 233 KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS------------------- 293 (506)
T ss_pred cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-------------------
Confidence 3444555666666654433111 1111123444577889999999999965443
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc--cCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 005473 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRV 623 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~--H~~~V~~v~~spdg~~LaTgs~DgtIrv 623 (695)
.+...++.|..+|+.+..+|.|.||++++.||+..+.|++++.++..... ..-.+++.+|+|||-+|.+|..|+.|+|
T Consensus 294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 23455678999999999999999999999999999999999998866643 2245899999999999999999999999
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC-CCcEEEEEEeCC
Q 005473 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF-FESFVSVRVVQP 694 (695)
Q Consensus 624 WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h-~~~VtsVaf~sP 694 (695)
||+.+... +..|.+|.+.|..+.|+.+| ++++++.+|++|++||+|+-+...+|.-. ..+|.++.| .+
T Consensus 374 wdlks~~~-~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~f-D~ 442 (506)
T KOG0289|consen 374 WDLKSQTN-VAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSF-DQ 442 (506)
T ss_pred EEcCCccc-cccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEE-cC
Confidence 99998774 89999999999999999886 57789999999999999988877777633 236888888 64
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.76 E-value=1.5e-17 Score=191.92 Aligned_cols=179 Identities=22% Similarity=0.375 Sum_probs=147.9
Q ss_pred cEEEEee--CCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473 507 RFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (695)
Q Consensus 507 ~~lasgS--~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl 584 (695)
..+++|+ .|+.+++|....-. +..........+++.+...|.+.|+|+.|++||++||+|++|+.|.||..
T Consensus 26 ~~~aTgGq~~d~~~~iW~~~~vl-------~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 26 VKFATGGQVLDGGIVIWSQDPVL-------DEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred eeEecCCccccccceeecccccc-------chhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 4568888 99999999543211 00111111123567788899999999999999999999999999999987
Q ss_pred CC------------------CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE
Q 005473 585 ES------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (695)
Q Consensus 585 ~t------------------~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl 646 (695)
.. .+++..+.+|.+.|.+++|+|++.+|++++.|++|.|||.++. .+++++.+|.+.|-.+
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGv 177 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGV 177 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeecccccccce
Confidence 62 3467889999999999999999999999999999999999998 5699999999999999
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC------CcEEEEEEeCCC
Q 005473 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF------ESFVSVRVVQPR 695 (695)
Q Consensus 647 ~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~------~~VtsVaf~sPd 695 (695)
.|.|-|+ +||+=+.|++|+||.+.+-.+.+.+.++. .-+..+.| +||
T Consensus 178 s~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSW-SPD 230 (942)
T KOG0973|consen 178 SWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSW-SPD 230 (942)
T ss_pred EECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeeccc-CCC
Confidence 9999998 78899999999999988777777777553 35577888 886
No 78
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=9.1e-18 Score=177.82 Aligned_cols=190 Identities=21% Similarity=0.295 Sum_probs=148.4
Q ss_pred CCCCcEEEEeeCCCcEEEEeCC--CCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcE
Q 005473 503 TDMDRFVDDGSLDDNVESFLSP--DDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKA 579 (695)
Q Consensus 503 ~~~~~~lasgS~D~~V~lw~~~--~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg-~~LaSgs~Dg~V 579 (695)
....+|+|.|+.|..|.+|+.. +...+....+......+...-+.-..-.+|++.|.++.|+..- +.||||+.|++|
T Consensus 189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence 3445899999999999999652 2222222233222111111111112234799999999998864 489999999999
Q ss_pred EEEECCCCeEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEE
Q 005473 580 VLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (695)
Q Consensus 580 ~IWDl~t~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaS 658 (695)
++||+.++++..++..|.+.|.++.|+| ....|++||.|++|.+.|+|.....-..+. ..+.|-.++|+|.....+++
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEE
Confidence 9999999999999999999999999999 477899999999999999996443222222 34679999999999999999
Q ss_pred EeCCCcEEEEECCC-CeEEEEEecCCCcEEEEEEeCC
Q 005473 659 CDNNSEIRYWSINN-GSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 659 gs~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sP 694 (695)
+..||+|+-+|+|. ++++.++++|.++|.+|++ ++
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~-n~ 383 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSV-NI 383 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEe-cC
Confidence 99999999999997 5999999999999999998 64
No 79
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.75 E-value=1.5e-17 Score=173.04 Aligned_cols=183 Identities=20% Similarity=0.310 Sum_probs=144.5
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTE 585 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg-~~LaSgs~Dg~V~IWDl~ 585 (695)
.++++=+..|.|.+|+...-...-.... -..+....+++.++.+|.+.=+.++|||-. ..|++|..-+.|++|-..
T Consensus 166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~---~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~ 242 (440)
T KOG0302|consen 166 VLCASWSENGRVQVWDLAPHLNALSEPG---LEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS 242 (440)
T ss_pred ceeeeecccCcEEEEEchhhhhhhcCcc---ccccccccCceEEecccCccceeeecccccccccccCccccceEeeeec
Confidence 5667777889999996643210000000 011124568899999999999999999932 247788888899999988
Q ss_pred CCeEE---EEecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecCCCeEEEEE
Q 005473 586 SFTVK---STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (695)
Q Consensus 586 t~~~~---~~l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~--~~l~~~~gh~~~V~sl~fspdg~~llaSg 659 (695)
++.-. .-+.+|+..|.+++|+|. ...|++||.||+|+|||+|.+. .|+.+ ..|.+.|..|.|+.+.+ +|++|
T Consensus 243 ~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~-lLasG 320 (440)
T KOG0302|consen 243 TGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREP-LLASG 320 (440)
T ss_pred cCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcc-eeeec
Confidence 76543 345789999999999995 6789999999999999999873 23444 88999999999999887 89999
Q ss_pred eCCCcEEEEECCC---CeEEEEEecCCCcEEEEEEeCCC
Q 005473 660 DNNSEIRYWSINN---GSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 660 s~Dg~IriWDl~t---g~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+.||+++|||+|. +++|..|+-|..+|++|.| ||.
T Consensus 321 ~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW-~p~ 358 (440)
T KOG0302|consen 321 GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEW-HPH 358 (440)
T ss_pred CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEe-ccc
Confidence 9999999999985 6789999999999999999 984
No 80
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.75 E-value=1.3e-17 Score=169.65 Aligned_cols=198 Identities=15% Similarity=0.239 Sum_probs=153.2
Q ss_pred cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (695)
Q Consensus 476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~ 555 (695)
..+..++.+-.|++|| .++++|+.|..|+++++..--... ....+...........++++..|.
T Consensus 109 t~HK~~cR~aafs~DG---------------~lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvIRTlYDH~ 172 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDG---------------SLVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVIRTLYDHV 172 (430)
T ss_pred eecccceeeeeeCCCC---------------cEEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceEeehhhcc
Confidence 3455577778888887 799999999999999775321100 111111111222235688999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 005473 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (695)
Q Consensus 556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l--~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l 633 (695)
+.|+++.|+|....|++|+.|++|++||+......+.+ -....+|.++.|+|.|.+|+.|..-.++++||+.+-.. .
T Consensus 173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc-f 251 (430)
T KOG0640|consen 173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC-F 251 (430)
T ss_pred CcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeE-e
Confidence 99999999999999999999999999999654333222 22467899999999999999999999999999998542 3
Q ss_pred EE---EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cCC-CcEEEEEE
Q 005473 634 RT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-NFF-ESFVSVRV 691 (695)
Q Consensus 634 ~~---~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~h~-~~VtsVaf 691 (695)
.. -..|.+.|++|.+++.++ ++++++.||.|++||--+++|+.+|. +|. ..|.+..|
T Consensus 252 vsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~F 313 (430)
T KOG0640|consen 252 VSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVF 313 (430)
T ss_pred eecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEE
Confidence 22 347899999999999998 77799999999999999999999998 564 46777777
No 81
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.7e-16 Score=161.13 Aligned_cols=195 Identities=21% Similarity=0.301 Sum_probs=136.1
Q ss_pred CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCc---------------------------
Q 005473 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDR--------------------------- 532 (695)
Q Consensus 480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~--------------------------- 532 (695)
..+..+.|+.+| .++++++.|.++++|++.++...+..
T Consensus 15 ~~i~sl~fs~~G---------------~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 15 GKINSLDFSDDG---------------LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred CceeEEEecCCC---------------CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCC
Confidence 356667777766 56677788888888887665322211
Q ss_pred -cccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccc---------------
Q 005473 533 -VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--------------- 596 (695)
Q Consensus 533 -~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H--------------- 596 (695)
..+..+. .+-+.++.+.||+..|++++.+|-+..++|++.|++|++||++..+|...+.--
T Consensus 80 ~tIryLsl---~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA 156 (311)
T KOG1446|consen 80 DTIRYLSL---HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFA 156 (311)
T ss_pred CceEEEEe---ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEE
Confidence 1111111 223567888999999999999999999999999999999999865554443211
Q ss_pred ------------------------------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCe---
Q 005473 597 ------------------------------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--- 643 (695)
Q Consensus 597 ------------------------------~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V--- 643 (695)
....+.|.|+|||+.++.+...+.+++.|.-+|.. +.++.++...-
T Consensus 157 ~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~-~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 157 LANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV-KSTFSGYPNAGNLP 235 (311)
T ss_pred EecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE-eeeEeeccCCCCcc
Confidence 22334455555555555554455555555544442 45555554332
Q ss_pred EEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec-CCCcEEEEEEeCCC
Q 005473 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN-FFESFVSVRVVQPR 695 (695)
Q Consensus 644 ~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~-h~~~VtsVaf~sPd 695 (695)
.+.+|.||+. ++++|+.||+|.+|++++|..+..+.+ +.+++.++.| +|.
T Consensus 236 ~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~f-nP~ 286 (311)
T KOG1446|consen 236 LSATFTPDSK-FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRF-NPR 286 (311)
T ss_pred eeEEECCCCc-EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcccccc-CCc
Confidence 5778999998 555999999999999999999999998 7999999999 985
No 82
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=7.7e-17 Score=163.17 Aligned_cols=182 Identities=19% Similarity=0.317 Sum_probs=141.9
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl 584 (695)
.+++.+|+.|+.+.+|+.....+-+....- .+..+.-....-.+|+..|.++.|-| |.-.+.+++.|++++|||+
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li----~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDt 131 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLI----AKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDT 131 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccce----eheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeec
Confidence 489999999999999988654322211110 01111011122347889999999998 5557889999999999999
Q ss_pred CCCeEEEEecccCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 005473 585 ESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (695)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~v~~spd---g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~ 661 (695)
.+.+....|+ ..+.|+.-+|+|- ..++|+|..|-.|++-|+..+.. -.++.||.+.|.+|.|+|..+++|++|+.
T Consensus 132 nTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~~vlaV~Wsp~~e~vLatgsa 209 (397)
T KOG4283|consen 132 NTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRDGVLAVEWSPSSEWVLATGSA 209 (397)
T ss_pred ccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccCceEEEEeccCceeEEEecCC
Confidence 9999888876 4678999999983 45788888899999999999774 89999999999999999999999999999
Q ss_pred CCcEEEEECCCC-eEEEEEe--------------cCCCcEEEEEEeCC
Q 005473 662 NSEIRYWSINNG-SCAGVFK--------------NFFESFVSVRVVQP 694 (695)
Q Consensus 662 Dg~IriWDl~tg-~~v~~~~--------------~h~~~VtsVaf~sP 694 (695)
||.||+||++.. .|..++. +|.+.|..++| ..
T Consensus 210 Dg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~-tS 256 (397)
T KOG4283|consen 210 DGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAW-TS 256 (397)
T ss_pred CceEEEEEeecccceeEEeecccCccCccccccccccceeeeeee-cc
Confidence 999999999864 3444332 66788888888 54
No 83
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.74 E-value=5.7e-18 Score=172.70 Aligned_cols=167 Identities=16% Similarity=0.295 Sum_probs=140.5
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEe-cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l-~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~ 585 (695)
.++++|+.||.|++|....+. +++.+ ++|+..|+|+.|+.|+..|++++.|.+|+|.-++
T Consensus 276 EMlAsGsqDGkIKvWri~tG~-------------------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK 336 (508)
T KOG0275|consen 276 EMLASGSQDGKIKVWRIETGQ-------------------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK 336 (508)
T ss_pred HHhhccCcCCcEEEEEEecch-------------------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc
Confidence 789999999999999665442 22333 4799999999999999999999999999999999
Q ss_pred CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE------------------------------
Q 005473 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT------------------------------ 635 (695)
Q Consensus 586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~------------------------------ 635 (695)
.|++++.++||.+.|+...|.++|.++++++.||+|+||+.++.. |+.+
T Consensus 337 SGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte-C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn 415 (508)
T KOG0275|consen 337 SGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE-CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN 415 (508)
T ss_pred cchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchh-hhhhccCCCCcccceeEEEcCCCCceEEEEcCCC
Confidence 999999999999999999999999999999999999999987643 2211
Q ss_pred --------------Ee---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 636 --------------FT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 636 --------------~~---gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
|. ...+...+.+++|.|.+++ +.++|+.+++|.+-+|+..+++..|...|..++- ||.
T Consensus 416 tv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiY-cigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~H-HPH 490 (508)
T KOG0275|consen 416 TVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIY-CIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTH-HPH 490 (508)
T ss_pred eEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEE-EEccCcEEEEEEeecCceeeeeeccccccccccc-Ccc
Confidence 11 1123345667899998655 6677999999999999999999999999999988 883
No 84
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=4.4e-17 Score=166.00 Aligned_cols=201 Identities=21% Similarity=0.379 Sum_probs=154.1
Q ss_pred CCCCceEEEEecCCCccccc--------cCCccCCCCcEEEEeeCCCcEEEEe------CCCCCCCCCccc---------
Q 005473 478 GASSKSLLMFGSDGMGSLTS--------APNQLTDMDRFVDDGSLDDNVESFL------SPDDADPRDRVG--------- 534 (695)
Q Consensus 478 ~s~~~s~l~~~~dg~~~la~--------s~~~l~~~~~~lasgS~D~~V~lw~------~~~~~~~~~~~~--------- 534 (695)
.+.+.+...|+.....||.. .+..|.....+++++|.|.+..+|. .+....+.+...
T Consensus 166 ASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe 245 (481)
T KOG0300|consen 166 ASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDE 245 (481)
T ss_pred cccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccc
Confidence 34455556666554433322 2223455568999999999999996 222111111111
Q ss_pred --cccc---cCCCce-eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCC
Q 005473 535 --RSAE---VGKGFT-FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 608 (695)
Q Consensus 535 --~~~d---~~~~~~-~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spd 608 (695)
+-.+ ..++.+ -.++..+.+|.+.|.|+.|-..|..+++++.|.+..+||+++++++..+.||....+.++-+|.
T Consensus 246 ~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt 325 (481)
T KOG0300|consen 246 HNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT 325 (481)
T ss_pred cccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCc
Confidence 1111 112222 2456788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-eEEEEEe
Q 005473 609 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK 680 (695)
Q Consensus 609 g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg-~~v~~~~ 680 (695)
-++++|++.|.++|+||.+..-..+..|.||...|+++.|..+.+ +++|+.|.+|+|||+++- .++.++.
T Consensus 326 QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIR 396 (481)
T KOG0300|consen 326 QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIR 396 (481)
T ss_pred ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeee
Confidence 999999999999999999976667899999999999999998865 669999999999999863 4555554
No 85
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.73 E-value=2.3e-17 Score=163.70 Aligned_cols=165 Identities=20% Similarity=0.324 Sum_probs=142.5
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
+++.+|+.+..+++|+..... .+...+.+|++.|..+.|....+.|+++.+|++||+||+++
T Consensus 113 ~~lltgg~ekllrvfdln~p~------------------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT 174 (334)
T KOG0278|consen 113 NYLLTGGQEKLLRVFDLNRPK------------------APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT 174 (334)
T ss_pred hhhhccchHHHhhhhhccCCC------------------CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc
Confidence 778999999999999665432 23455689999999999999999999999999999999999
Q ss_pred CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 005473 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (695)
Q Consensus 587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir 666 (695)
++.+.++.- ...|+++.++++|++|.++ ..+.|++||..+-+. ++.+.- .-.|.+..++|+.. ++++|++|..++
T Consensus 175 gt~v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~-lKs~k~-P~nV~SASL~P~k~-~fVaGged~~~~ 249 (334)
T KOG0278|consen 175 GTEVQSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGL-LKSYKM-PCNVESASLHPKKE-FFVAGGEDFKVY 249 (334)
T ss_pred CcEEEEEec-CCCCcceeeccCCCEEEEe-cCceeEEeccccccc-eeeccC-ccccccccccCCCc-eEEecCcceEEE
Confidence 999999874 6789999999998877665 567899999998664 666553 35689999999984 788999999999
Q ss_pred EEECCCCeEEEEE-ecCCCcEEEEEEeCCC
Q 005473 667 YWSINNGSCAGVF-KNFFESFVSVRVVQPR 695 (695)
Q Consensus 667 iWDl~tg~~v~~~-~~h~~~VtsVaf~sPd 695 (695)
.||+.+|+.+..+ ++|.++|.||+| +|+
T Consensus 250 kfDy~TgeEi~~~nkgh~gpVhcVrF-SPd 278 (334)
T KOG0278|consen 250 KFDYNTGEEIGSYNKGHFGPVHCVRF-SPD 278 (334)
T ss_pred EEeccCCceeeecccCCCCceEEEEE-CCC
Confidence 9999999999997 899999999999 996
No 86
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.73 E-value=7e-17 Score=160.37 Aligned_cols=167 Identities=26% Similarity=0.384 Sum_probs=142.5
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (695)
Q Consensus 505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl 584 (695)
..-+++++++|-+|++|.+..+ .+..++....+-|+.+.+.||++.||+|+.- .||+||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG-------------------~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTG-------------------ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcC-------------------eEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEc
Confidence 4468999999999999955433 5777888888889999999999999999864 5999999
Q ss_pred CCCe--EEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473 585 ESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (695)
Q Consensus 585 ~t~~--~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D 662 (695)
++.+ ++.++++|+..|+.|.|..+|+.++|||+||++||||++... |-+.+ .|.+.|.+|..+|+...|| +|+.+
T Consensus 69 ~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~-~qR~~-~~~spVn~vvlhpnQteLi-s~dqs 145 (311)
T KOG0315|consen 69 NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-CQRNY-QHNSPVNTVVLHPNQTELI-SGDQS 145 (311)
T ss_pred cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc-cchhc-cCCCCcceEEecCCcceEE-eecCC
Confidence 8876 588999999999999999999999999999999999999843 33444 4789999999999988666 99999
Q ss_pred CcEEEEECCCCeEEEEEe-cCCCcEEEEEEeCCC
Q 005473 663 SEIRYWSINNGSCAGVFK-NFFESFVSVRVVQPR 695 (695)
Q Consensus 663 g~IriWDl~tg~~v~~~~-~h~~~VtsVaf~sPd 695 (695)
|.|+|||+++..|...+. .....|.++.. +||
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v-~~d 178 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTV-MPD 178 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEE-cCC
Confidence 999999999988877665 34567888887 775
No 87
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.73 E-value=6.4e-17 Score=168.56 Aligned_cols=203 Identities=20% Similarity=0.304 Sum_probs=156.7
Q ss_pred ccccCCCCCceEEEEecCCCcccccc--CCc--------cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCC
Q 005473 473 TLQHNGASSKSLLMFGSDGMGSLTSA--PNQ--------LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542 (695)
Q Consensus 473 ~l~~s~s~~~s~l~~~~dg~~~la~s--~~~--------l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~ 542 (695)
...+.++.++....|...|...+... .+. .......+++++.|.++++|....+..
T Consensus 116 ~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~-------------- 181 (423)
T KOG0313|consen 116 KWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN-------------- 181 (423)
T ss_pred ceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh--------------
Confidence 45566777888888887776221111 000 123334689999999999996654421
Q ss_pred ceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-------------------------CCeEEEEecccC
Q 005473 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-------------------------SFTVKSTLEEHT 597 (695)
Q Consensus 543 ~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~-------------------------t~~~~~~l~~H~ 597 (695)
..+.+..-+||...|-||...++|..+++|+.|.+|+||+.. ++.++.++.||+
T Consensus 182 -~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt 260 (423)
T KOG0313|consen 182 -KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT 260 (423)
T ss_pred -hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence 112223334999999999999999999999999999999932 234677889999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe---
Q 005473 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--- 674 (695)
Q Consensus 598 ~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~--- 674 (695)
.+|.+|.|++ ...+++++.|.+|++||+.+++. +.++.+ ...+.|++.+|... +|++|+.|..||+||.|++.
T Consensus 261 ~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~-~~~~~~-~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 261 EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL-KSTLTT-NKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cceeeEEEcC-CCceEeecccceEEEEEeecccc-eeeeec-CcceeEeecccccc-eeeecCCCCceeecCCCCCCCce
Confidence 9999999988 67899999999999999999875 555554 35689999999765 88899999999999999752
Q ss_pred EEEEEecCCCcEEEEEEeCCC
Q 005473 675 CAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 675 ~v~~~~~h~~~VtsVaf~sPd 695 (695)
....|.+|.+.|.+|.| +|.
T Consensus 337 v~~s~~gH~nwVssvkw-sp~ 356 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKW-SPT 356 (423)
T ss_pred eEEeeecchhhhhheec-CCC
Confidence 45778899999999999 983
No 88
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=1.6e-16 Score=162.44 Aligned_cols=164 Identities=15% Similarity=0.260 Sum_probs=134.1
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHDKKAVLWCT 584 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~--~LaSgs~Dg~V~IWDl 584 (695)
.|+++||.|.+|++|+.... ..+..+-.|.+.|+||.|.+.-. .|++|+.||.|.||++
T Consensus 54 ~~~aSGssDetI~IYDm~k~-------------------~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 54 PYVASGSSDETIHIYDMRKR-------------------KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred eeEeccCCCCcEEEEeccch-------------------hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 89999999999999966443 34566778999999999998765 8999999999999999
Q ss_pred CCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC-------------------------
Q 005473 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH------------------------- 639 (695)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh------------------------- 639 (695)
...+++..+++|.+.|+.++.+|.+++.++.+.|+.+++||+-+++.....--.+
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~ 194 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIY 194 (362)
T ss_pred CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEE
Confidence 9999999999999999999999999999999999999999997665311100000
Q ss_pred -------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473 640 -------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 640 -------------~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf 691 (695)
...+.|+.|.. +. .+++|++|+.|++||.+.+.+...|.+|...|.+|.+
T Consensus 195 q~d~A~v~~~i~~~~r~l~~~~l~-~~-~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~ 257 (362)
T KOG0294|consen 195 QLDNASVFREIENPKRILCATFLD-GS-ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIAS 257 (362)
T ss_pred ecccHhHhhhhhccccceeeeecC-Cc-eEEEecCCceEEEeccCCCccceeeecchhheeeeEE
Confidence 11233444432 23 4568888999999999999999999999999999984
No 89
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=3.7e-17 Score=162.05 Aligned_cols=176 Identities=18% Similarity=0.229 Sum_probs=144.6
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEE
Q 005473 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAV 580 (695)
Q Consensus 503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp--dg~~LaSgs~Dg~V~ 580 (695)
.-....|++++.|++|++|...... ....+.+|++|.++|.-++|.. -|.+||++++||+|.
T Consensus 20 DyygkrlATcsSD~tVkIf~v~~n~----------------~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 20 DYYGKRLATCSSDGTVKIFEVRNNG----------------QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred hhhcceeeeecCCccEEEEEEcCCC----------------CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 3445789999999999999654332 1356788999999999999966 799999999999999
Q ss_pred EEECCCCeE--EEEecccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecC---
Q 005473 581 LWCTESFTV--KSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPS--- 651 (695)
Q Consensus 581 IWDl~t~~~--~~~l~~H~~~V~~v~~spd--g~~LaTgs~DgtIrvWDl~t~~--~~l~~~~gh~~~V~sl~fspd--- 651 (695)
||.-.++.- ......|...|++|+|.|. |-.|++++.||.|.|.++++.. ...+...+|.-.|++++|.|-
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999887743 3345679999999999995 6688999999999999998752 223566789999999999986
Q ss_pred C----------CeEEEEEeCCCcEEEEECCCCe--EEEEEecCCCcEEEEEEeCCC
Q 005473 652 K----------EDLLCSCDNNSEIRYWSINNGS--CAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 652 g----------~~llaSgs~Dg~IriWDl~tg~--~v~~~~~h~~~VtsVaf~sPd 695 (695)
| ..-|++|+.|..|+||+...++ ...++.+|++.|..|+| .|.
T Consensus 164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAw-aP~ 218 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAW-APS 218 (299)
T ss_pred ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhh-ccc
Confidence 3 1247899999999999998864 34568899999999999 884
No 90
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.72 E-value=6.7e-17 Score=168.25 Aligned_cols=162 Identities=18% Similarity=0.324 Sum_probs=130.2
Q ss_pred CCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 005473 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (695)
Q Consensus 479 s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V 558 (695)
.....-+.|+|... ..+++|..-+.|++|....+. |.... .-+.+|+..|
T Consensus 211 k~EGy~LdWSp~~~--------------g~LlsGDc~~~I~lw~~~~g~---------W~vd~-------~Pf~gH~~SV 260 (440)
T KOG0302|consen 211 KGEGYGLDWSPIKT--------------GRLLSGDCVKGIHLWEPSTGS---------WKVDQ-------RPFTGHTKSV 260 (440)
T ss_pred Cccceeeecccccc--------------cccccCccccceEeeeeccCc---------eeecC-------ccccccccch
Confidence 35667777877444 235666677788888543321 21111 2245799999
Q ss_pred EEEEEcCCC-CEEEEEeCCCcEEEEECCCC---eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--ee
Q 005473 559 ESCHFSPDG-KLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YS 632 (695)
Q Consensus 559 ~~v~fspdg-~~LaSgs~Dg~V~IWDl~t~---~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~--~~ 632 (695)
..+.|||.. ..||||+.||+|+|||++.+ -++.+ +.|.+.|+.|.|+..-.+||+|++||+++|||+|.-+ .+
T Consensus 261 EDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~p 339 (440)
T KOG0302|consen 261 EDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQP 339 (440)
T ss_pred hhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCc
Confidence 999999965 48999999999999999987 34433 8899999999999987799999999999999998643 46
Q ss_pred EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (695)
Q Consensus 633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~ 671 (695)
+..|.-|..+|+||.|+|....+|++++.|..|.|||+.
T Consensus 340 VA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 340 VATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 889999999999999999988899999999999999985
No 91
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.72 E-value=6e-17 Score=179.07 Aligned_cols=189 Identities=23% Similarity=0.361 Sum_probs=151.3
Q ss_pred cccCCCCCceEEEEecCCCcccccc-----C------CccCCCCc-EEEEeeCCCcEEEEeCCCCCCCCCccccccccCC
Q 005473 474 LQHNGASSKSLLMFGSDGMGSLTSA-----P------NQLTDMDR-FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK 541 (695)
Q Consensus 474 l~~s~s~~~s~l~~~~dg~~~la~s-----~------~~l~~~~~-~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~ 541 (695)
...+++++.+...|.+.+..-+... . ..+...++ .+++|+.|.++.+|...
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~----------------- 89 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS----------------- 89 (745)
T ss_pred EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC-----------------
Confidence 4566777888888877554221110 0 11111222 25668888888877332
Q ss_pred CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 005473 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (695)
Q Consensus 542 ~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtI 621 (695)
...++.++++|..-|.|++...++. |+||+.|.+++||-. +++...+.+|...|+++.+-|++ .++|||.|++|
T Consensus 90 --~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtI 163 (745)
T KOG0301|consen 90 --QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTI 163 (745)
T ss_pred --CCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCccee
Confidence 2256788999999999999988888 999999999999986 56777799999999999999987 89999999999
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 622 rvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf 691 (695)
|+|.-. .++++|.||.+.|+.+++-+++. |++|+.||.|+.||+ +|+++..+.+|+.-|.+|..
T Consensus 164 klWk~~---~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~ 227 (745)
T KOG0301|consen 164 KLWKGG---TLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISM 227 (745)
T ss_pred eeccCC---chhhhhccchhheeeeEEecCCC--eEeecCCceEEEEec-cCceeeeeeccceEEEEEEe
Confidence 999864 36899999999999999998865 459999999999999 79999999999999999984
No 92
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1e-16 Score=176.92 Aligned_cols=166 Identities=22% Similarity=0.360 Sum_probs=144.6
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~-H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl 584 (695)
..+|+.|..++.|.+|+.... +.+..+.+ |...|-|++|+ +..+.+|+.|+.|.++|+
T Consensus 229 G~~LavG~~~g~v~iwD~~~~-------------------k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 229 GSHLAVGTSDGTVQIWDVKEQ-------------------KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDV 287 (484)
T ss_pred CCEEEEeecCCeEEEEehhhc-------------------cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEE
Confidence 378999999999999965322 34455566 99999999998 678999999999999999
Q ss_pred CCCeEEEE-ecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe--C
Q 005473 585 ESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--N 661 (695)
Q Consensus 585 ~t~~~~~~-l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs--~ 661 (695)
+..+.... +.+|...|+.+.|++|+.+||+|+.|+.|.|||..... ++..+..|...|..++|||-...+||+|+ .
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~ 366 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLATGGGSA 366 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceEEcCCCc
Confidence 98776555 88999999999999999999999999999999996644 58889999999999999999888999876 7
Q ss_pred CCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 662 NSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 662 Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
|++|++||+.+|+++..+... .-|.+|.| +|.
T Consensus 367 D~~i~fwn~~~g~~i~~vdtg-sQVcsL~W-sk~ 398 (484)
T KOG0305|consen 367 DRCIKFWNTNTGARIDSVDTG-SQVCSLIW-SKK 398 (484)
T ss_pred ccEEEEEEcCCCcEecccccC-CceeeEEE-cCC
Confidence 999999999999999988644 67899999 763
No 93
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3e-16 Score=167.25 Aligned_cols=189 Identities=17% Similarity=0.267 Sum_probs=155.0
Q ss_pred CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (695)
Q Consensus 478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~ 557 (695)
+-.+++++.|..|+ ..+.+||.|+.|.+|...+-. +........+++.+..|+-+
T Consensus 122 HYQ~ITcL~fs~dg---------------s~iiTgskDg~V~vW~l~~lv----------~a~~~~~~~p~~~f~~Htls 176 (476)
T KOG0646|consen 122 HYQSITCLKFSDDG---------------SHIITGSKDGAVLVWLLTDLV----------SADNDHSVKPLHIFSDHTLS 176 (476)
T ss_pred hccceeEEEEeCCC---------------cEEEecCCCccEEEEEEEeec----------ccccCCCccceeeeccCcce
Confidence 34455666655555 788999999999999764432 11122255778889999999
Q ss_pred eEEEEEcCCC--CEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-----
Q 005473 558 VESCHFSPDG--KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD----- 630 (695)
Q Consensus 558 V~~v~fspdg--~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~----- 630 (695)
|+++...+.| .+|+|++.|.++++||+..+..+.++. ....+.+|+.+|.++.++.|+.+|.|.+.++....
T Consensus 177 ITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~ 255 (476)
T KOG0646|consen 177 ITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAG 255 (476)
T ss_pred eEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccc
Confidence 9999998754 489999999999999999999888776 46789999999999999999999999999875322
Q ss_pred ----------eeEEEEecCCC--CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 631 ----------YSLRTFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 631 ----------~~l~~~~gh~~--~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
..+..+.||.+ .|+|++++-||. +|++|+.||.|+|||+.+.+|++++..-.++|+-+.+ .|
T Consensus 256 v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i-~~ 329 (476)
T KOG0646|consen 256 VNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI-NP 329 (476)
T ss_pred ccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe-ec
Confidence 13567889988 999999999998 7779999999999999999999999877888888877 54
No 94
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.70 E-value=7.9e-17 Score=163.94 Aligned_cols=175 Identities=24% Similarity=0.381 Sum_probs=140.7
Q ss_pred cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC
Q 005473 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (695)
Q Consensus 474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~ 553 (695)
..+.+.+++..+.|||.. .++++|+.|++|++|++..... . +.++.+ .
T Consensus 167 TlYDH~devn~l~FHPre---------------~ILiS~srD~tvKlFDfsK~sa-----------K-----rA~K~~-q 214 (430)
T KOG0640|consen 167 TLYDHVDEVNDLDFHPRE---------------TILISGSRDNTVKLFDFSKTSA-----------K-----RAFKVF-Q 214 (430)
T ss_pred ehhhccCcccceeecchh---------------heEEeccCCCeEEEEecccHHH-----------H-----HHHHHh-h
Confidence 344566677777777654 7899999999999997743311 0 111111 2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 005473 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (695)
Q Consensus 554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l---~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~ 630 (695)
...+|.|+.|+|.|.+|+.|..-.++++||+.+.+|...- ..|++.|++|.+++.+++.+||+.||.|++||--+.+
T Consensus 215 d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r 294 (430)
T KOG0640|consen 215 DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR 294 (430)
T ss_pred ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH
Confidence 2456999999999999999999999999999998887654 4699999999999999999999999999999987755
Q ss_pred eeEEEEe-cCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473 631 YSLRTFT-GHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF 682 (695)
Q Consensus 631 ~~l~~~~-gh~-~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h 682 (695)
|+.++. .|. +.|++..|..+|+++| +.+.|..|++|.+.+++++.++.|.
T Consensus 295 -Cv~t~~~AH~gsevcSa~Ftkn~kyiL-sSG~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 295 -CVRTIGNAHGGSEVCSAVFTKNGKYIL-SSGKDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred -HHHHHHhhcCCceeeeEEEccCCeEEe-ecCCcceeeeeeecCCceEEEEecC
Confidence 576654 565 4699999999999655 8888999999999999999988854
No 95
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.70 E-value=3.5e-16 Score=173.12 Aligned_cols=187 Identities=22% Similarity=0.323 Sum_probs=148.3
Q ss_pred ccCCCCCceEEEEecCCCccccc------cCCccC-CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeee
Q 005473 475 QHNGASSKSLLMFGSDGMGSLTS------APNQLT-DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE 547 (695)
Q Consensus 475 ~~s~s~~~s~l~~~~dg~~~la~------s~~~l~-~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~ 547 (695)
...++.+..+..|..++..-+.+ ....+. ..+..+++||||.++++|... .+
T Consensus 74 l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~---------------------~l 132 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG---------------------EL 132 (745)
T ss_pred eEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecch---------------------hh
Confidence 44577788888888776511111 000111 222347999999999999332 12
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (695)
Q Consensus 548 v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~ 627 (695)
...+.+|..+|.++++-|++ .++||+.|++|++|.- ++++++|.+|++.|..+++-++ ..|++++.||.|++||+.
T Consensus 133 ~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~~ 208 (745)
T KOG0301|consen 133 VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDLD 208 (745)
T ss_pred hcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEecc
Confidence 33478999999999999998 7889999999999985 7889999999999999999886 467888999999999994
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf 691 (695)
+ .++..+.||...|++++...++. ++++|++|+++|||+.. +|+.++...+..|+++.+
T Consensus 209 -g-e~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~ 267 (745)
T KOG0301|consen 209 -G-EVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV 267 (745)
T ss_pred -C-ceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC--ceEEEEecCccceEEEEE
Confidence 3 46899999999999999655555 67799999999999986 899999888888888876
No 96
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.5e-15 Score=147.29 Aligned_cols=196 Identities=21% Similarity=0.346 Sum_probs=152.4
Q ss_pred CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCC---C------------CC-----------
Q 005473 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD---P------------RD----------- 531 (695)
Q Consensus 478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~---~------------~~----------- 531 (695)
+..++.+..|+++| .++++|+.|.+|++..++.+.. + ++
T Consensus 88 hkgsiyc~~ws~~g---------------eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~ 152 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCG---------------ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGG 152 (350)
T ss_pred cCccEEEEEecCcc---------------CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCc
Confidence 44578889999888 6889999999988875543310 0 00
Q ss_pred ----------ccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc--c---
Q 005473 532 ----------RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--H--- 596 (695)
Q Consensus 532 ----------~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~--H--- 596 (695)
..+.+.+...+ ..+..+.+|++.|.++ ++-+|-.|++|+.|++|++||++-..++.++.. |
T Consensus 153 ~il~s~gagdc~iy~tdc~~g---~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g 228 (350)
T KOG0641|consen 153 AILASAGAGDCKIYITDCGRG---QGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG 228 (350)
T ss_pred eEEEecCCCcceEEEeecCCC---CcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC
Confidence 00111122222 3456778999988876 455688999999999999999998888887732 2
Q ss_pred --CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC--
Q 005473 597 --TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-- 672 (695)
Q Consensus 597 --~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-- 672 (695)
.+.|.+|+..|.|++|++|-.|....+||++.++. +..|..|...|.||.|+|..- ++.+|+.|..|++-|+..
T Consensus 229 lessavaav~vdpsgrll~sg~~dssc~lydirg~r~-iq~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 229 LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM-IQRFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred cccceeEEEEECCCcceeeeccCCCceEEEEeeCCce-eeeeCCCccceeEEEeCCCce-EEEEecccceEEEeecccch
Confidence 36799999999999999999999999999998764 899999999999999999855 666999999999999863
Q ss_pred --CeEEEEEecCCCcEEEEEEeCCC
Q 005473 673 --GSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 673 --g~~v~~~~~h~~~VtsVaf~sPd 695 (695)
.-++.+...|.+.+..++| ||.
T Consensus 307 a~el~~~vv~ehkdk~i~~rw-h~~ 330 (350)
T KOG0641|consen 307 AHELPIMVVAEHKDKAIQCRW-HPQ 330 (350)
T ss_pred hhcCceEEEEeccCceEEEEe-cCc
Confidence 2345566689999999999 983
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.69 E-value=2.5e-16 Score=166.31 Aligned_cols=167 Identities=16% Similarity=0.220 Sum_probs=147.3
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
.++.+|+.|.++.+++.+.+ ..+.+++||...|+.+.|+++...+++++.|..|+||.+..
T Consensus 232 ~~ilTGG~d~~av~~d~~s~-------------------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~ 292 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSN-------------------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL 292 (506)
T ss_pred CcceecCCCCceEEEecchh-------------------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc
Confidence 77899999999999955433 45678899999999999999999999999999999999988
Q ss_pred CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe-cCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 005473 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (695)
Q Consensus 587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~-gh~~~V~sl~fspdg~~llaSgs~Dg~I 665 (695)
..+...+..|..+|+.+..+|.|.+|++++.|++..+.|++++........ ...-.+++.+|||||- +|++|..||.|
T Consensus 293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~v 371 (506)
T KOG0289|consen 293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVV 371 (506)
T ss_pred ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceE
Confidence 888888899999999999999999999999999999999999775222222 1223589999999986 89999999999
Q ss_pred EEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 666 RYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 666 riWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
+|||+.++..+..|.+|+++|.+|+| +-
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~F-sE 399 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISF-SE 399 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEe-cc
Confidence 99999999999999999999999999 63
No 98
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4.6e-16 Score=171.82 Aligned_cols=168 Identities=22% Similarity=0.353 Sum_probs=144.1
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
..+.+|+.|+.|..++..... ..+.++.+|...|..+.|++|+++||+|+.|+.|.|||...
T Consensus 271 ~~lssGsr~~~I~~~dvR~~~------------------~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 271 SVLSSGSRDGKILNHDVRISQ------------------HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS 332 (484)
T ss_pred ceEEEecCCCcEEEEEEecch------------------hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC
Confidence 678899999999999664332 01113789999999999999999999999999999999988
Q ss_pred CeEEEEecccCCCeEEEEEcC-CCCEEEEEe--CCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEE-eCC
Q 005473 587 FTVKSTLEEHTQWITDVRFSP-SLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-DNN 662 (695)
Q Consensus 587 ~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs--~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSg-s~D 662 (695)
..++..+.+|.+.|.+++|+| ...+||+|+ .|++|++||+.++.. +.... ..+-|++|.|++..+.++.+- ..+
T Consensus 333 ~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~ 410 (484)
T KOG0305|consen 333 PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-IDSVD-TGSQVCSLIWSKKYKELLSTHGYSE 410 (484)
T ss_pred ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-ecccc-cCCceeeEEEcCCCCEEEEecCCCC
Confidence 899999999999999999999 577999975 599999999998764 55544 346799999999987777554 467
Q ss_pred CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 663 SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 663 g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
..|.||++.+-+.+..+.+|...|..+++ +||
T Consensus 411 n~i~lw~~ps~~~~~~l~gH~~RVl~la~-SPd 442 (484)
T KOG0305|consen 411 NQITLWKYPSMKLVAELLGHTSRVLYLAL-SPD 442 (484)
T ss_pred CcEEEEeccccceeeeecCCcceeEEEEE-CCC
Confidence 89999999999999999999999999999 997
No 99
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=3.4e-16 Score=174.22 Aligned_cols=148 Identities=24% Similarity=0.432 Sum_probs=135.0
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (695)
Q Consensus 504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD 583 (695)
+..+|++.+=.|.+|++|... +++....+.||.-+|.|+.++||+++|+||+.|+.|+||-
T Consensus 518 pdgk~LaVsLLdnTVkVyflD-------------------tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLD-------------------TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred CCCcEEEEEeccCeEEEEEec-------------------ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence 344899999999999999552 3356778999999999999999999999999999999999
Q ss_pred CCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (695)
Q Consensus 584 l~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg 663 (695)
++=|.|.+.+.+|.+.|.+|.|.|....++|+|.|+.|+-||-..-. ++..+.+|...|+|++..|+|. ++++++.|.
T Consensus 579 LdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe-~iq~L~~H~~ev~cLav~~~G~-~vvs~shD~ 656 (888)
T KOG0306|consen 579 LDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE-EIQKLDGHHSEVWCLAVSPNGS-FVVSSSHDK 656 (888)
T ss_pred cccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh-hheeeccchheeeeeEEcCCCC-eEEeccCCc
Confidence 99999999999999999999999999999999999999999998765 4899999999999999999998 677999999
Q ss_pred cEEEEECCC
Q 005473 664 EIRYWSINN 672 (695)
Q Consensus 664 ~IriWDl~t 672 (695)
+||+|....
T Consensus 657 sIRlwE~td 665 (888)
T KOG0306|consen 657 SIRLWERTD 665 (888)
T ss_pred eeEeeeccC
Confidence 999999654
No 100
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.69 E-value=3.3e-17 Score=162.64 Aligned_cols=185 Identities=19% Similarity=0.248 Sum_probs=156.0
Q ss_pred ccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 005473 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (695)
Q Consensus 475 ~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H 554 (695)
-+.+++++..+.|++ +.+..-|+++++.|+.--+-.. .+-.-+.++.+|
T Consensus 10 c~ghtrpvvdl~~s~------------itp~g~flisa~kd~~pmlr~g-------------------~tgdwigtfegh 58 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSP------------ITPDGYFLISASKDGKPMLRNG-------------------DTGDWIGTFEGH 58 (334)
T ss_pred EcCCCcceeEEeccC------------CCCCceEEEEeccCCCchhccC-------------------CCCCcEEeeecc
Confidence 345667888888876 3445589999998877555422 222457889999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (695)
Q Consensus 555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~ 634 (695)
++.|.++..+.+...-|+++.|-+.+|||.-++..+..+. |+..|.+++|+.|..+|+||+.++.+||||+...+.+..
T Consensus 59 kgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~ 137 (334)
T KOG0278|consen 59 KGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK 137 (334)
T ss_pred CcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch
Confidence 9999999999999999999999999999999999988886 899999999999999999999999999999999888889
Q ss_pred EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
.+.+|.+.|..+.|+.....+| ++..|++||+||++++..+.++. ...+|+++.+ ++
T Consensus 138 E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEv-s~ 194 (334)
T KOG0278|consen 138 EISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEV-SQ 194 (334)
T ss_pred hhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEe-cCCCCcceee-cc
Confidence 9999999999999998877666 66889999999999999998886 2345566665 54
No 101
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.69 E-value=3.4e-16 Score=166.61 Aligned_cols=196 Identities=22% Similarity=0.356 Sum_probs=155.5
Q ss_pred CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCcccccc-ccCCCceeeeEEEecCCCC
Q 005473 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSA-EVGKGFTFTEFQLIPASTS 556 (695)
Q Consensus 478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~-d~~~~~~~~~v~~l~~H~~ 556 (695)
+..++.++...+++ .++.+++.|++|.-|+...+...+....+-. ....+...++-. ++|..
T Consensus 141 H~~s~~~vals~d~---------------~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~k 203 (479)
T KOG0299|consen 141 HQLSVTSVALSPDD---------------KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVK 203 (479)
T ss_pred ccCcceEEEeeccc---------------cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccc
Confidence 44456666666555 7889999999999998866654332222210 000122222211 48999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~ 636 (695)
.|.|++.++||+||++|+.|..|.|||+++.+.+..+.+|.+.|.+++|......|++++.|++|++|+++.... +.++
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetl 282 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETL 282 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHH
Confidence 999999999999999999999999999999999999999999999999998888999999999999999998665 7889
Q ss_pred ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeC
Q 005473 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQ 693 (695)
Q Consensus 637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~s 693 (695)
.||.+.|..|+....++ .++.|+.|+++++|++. .+.-..|.+|.+.+-|++|++
T Consensus 283 yGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In 337 (479)
T KOG0299|consen 283 YGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN 337 (479)
T ss_pred hCCccceeeechhcccc-eEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec
Confidence 99999999999887765 77788899999999994 344455668888999999854
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=5.9e-16 Score=170.20 Aligned_cols=196 Identities=18% Similarity=0.269 Sum_probs=153.5
Q ss_pred cccCCCCCceEEEEecCCCccccccCCc-----------cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCC
Q 005473 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQ-----------LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542 (695)
Q Consensus 474 l~~s~s~~~s~l~~~~dg~~~la~s~~~-----------l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~ 542 (695)
..++.+.+.++..|++............ +.....++++|+.|+.|.+|+...+..... ..
T Consensus 87 tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~---------~s 157 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLV---------AS 157 (735)
T ss_pred ceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhh---------hh
Confidence 4455677888888877654211111100 133457889999999999998876643100 01
Q ss_pred ceeeeEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 005473 543 FTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (695)
Q Consensus 543 ~~~~~v~~l~-~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtI 621 (695)
+.......+. |+..+|++++.++.|..|++|+..+.+++||.++++.+..+.||+..|.++..++||+.++++|.||+|
T Consensus 158 ~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtI 237 (735)
T KOG0308|consen 158 FNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTI 237 (735)
T ss_pred ccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceE
Confidence 1112222333 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEe
Q 005473 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK 680 (695)
Q Consensus 622 rvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~ 680 (695)
++||+... .|+.++..|+..|+++..+|+=. .+++|+.||.|+.=|+++ .+++..++
T Consensus 238 rlWdLgqQ-rCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~~~~tlick 295 (735)
T KOG0308|consen 238 RLWDLGQQ-RCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNPAKSTLICK 295 (735)
T ss_pred Eeeecccc-ceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCchhheEeec
Confidence 99999974 47999999999999999998765 566999999999999998 45555444
No 103
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=160.67 Aligned_cols=125 Identities=20% Similarity=0.279 Sum_probs=102.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC----CCC
Q 005473 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH----STT 642 (695)
Q Consensus 567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh----~~~ 642 (695)
...+++|..|++|++||+++..++..+..+. .|+++..++++..|.+++.|.++.+.|+++... ..++... ...
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI-~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI-RQTFSAEGFKCASD 389 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccE-EEEeeccccccccc
Confidence 3456777778888888888888877777654 899999999999999999999999999998664 4444321 234
Q ss_pred eEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCC--cEEEEEEeCCC
Q 005473 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFE--SFVSVRVVQPR 695 (695)
Q Consensus 643 V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~--~VtsVaf~sPd 695 (695)
++.+.|+|++. ++++|+.||.|+||++.++++...+...+. .|++++| +|.
T Consensus 390 wtrvvfSpd~~-YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W-~~s 442 (459)
T KOG0288|consen 390 WTRVVFSPDGS-YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSW-NPS 442 (459)
T ss_pred cceeEECCCCc-eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEE-cCC
Confidence 78999999988 777999999999999999999999985544 5999999 873
No 104
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.68 E-value=9e-16 Score=153.89 Aligned_cols=144 Identities=16% Similarity=0.240 Sum_probs=126.2
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005473 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (695)
Q Consensus 550 ~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~ 629 (695)
.+.+|..+++-|.|+.+|.+|++|+.|.++.||-..+|+.+.++.||++.|+||+.+.+..+++||+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred Cee----------------------------------------------------EEEEecCCCCeEEEEEecCCCeEEE
Q 005473 630 DYS----------------------------------------------------LRTFTGHSTTVMSLDFHPSKEDLLC 657 (695)
Q Consensus 630 ~~~----------------------------------------------------l~~~~gh~~~V~sl~fspdg~~lla 657 (695)
+.. +..+..+.+.++++.|.|-+. .|+
T Consensus 85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~-~ii 163 (327)
T KOG0643|consen 85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE-TII 163 (327)
T ss_pred cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC-EEE
Confidence 531 111224456788899999988 555
Q ss_pred EEeCCCcEEEEECCCC-eEEEEEecCCCcEEEEEEeCCC
Q 005473 658 SCDNNSEIRYWSINNG-SCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 658 Sgs~Dg~IriWDl~tg-~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+|.+||.|.+||+++| +.+.....|...|+.|.| +|+
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~-s~d 201 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQF-SRD 201 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccc-cCC
Confidence 9999999999999998 556666789999999999 875
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=2.8e-16 Score=160.20 Aligned_cols=165 Identities=22% Similarity=0.381 Sum_probs=145.6
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-- 584 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl-- 584 (695)
..+.++|.|.+.++|....+ .++..+.||.+.|+||+|++.+.++++++.|++..||..
T Consensus 161 pi~gtASADhTA~iWs~Esg-------------------~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av 221 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLESG-------------------ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV 221 (481)
T ss_pred cceeecccccceeEEeeccc-------------------cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence 57889999999999955433 577889999999999999999999999999999999952
Q ss_pred ----CC----------------------------------CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473 585 ----ES----------------------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (695)
Q Consensus 585 ----~t----------------------------------~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl 626 (695)
.. ..++..+.+|.+.|.++.|-..|..++|++.|.+..+||+
T Consensus 222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDV 301 (481)
T KOG0300|consen 222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDV 301 (481)
T ss_pred cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeee
Confidence 00 1245678899999999999999999999999999999999
Q ss_pred CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-eEEEEEecCCCcEEEEEEeC
Q 005473 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKNFFESFVSVRVVQ 693 (695)
Q Consensus 627 ~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg-~~v~~~~~h~~~VtsVaf~s 693 (695)
+++.. +..+.||....+.++-||..+ |+++++.|.+.|+||++.. ..+.+|.||.+.|+++.| .
T Consensus 302 Etge~-v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF-~ 366 (481)
T KOG0300|consen 302 ETGEV-VNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVF-N 366 (481)
T ss_pred ccCce-eccccCcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccccceeEEEE-e
Confidence 99774 999999999999999999976 8889999999999999853 578899999999999998 5
No 106
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.67 E-value=1.4e-15 Score=158.01 Aligned_cols=146 Identities=21% Similarity=0.294 Sum_probs=133.3
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (695)
Q Consensus 547 ~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl 626 (695)
.+.++..|+++|.+|+.+|+.++++||+.|-...||++.++.....+.+|+..|+++.|+.+|.+||||+.+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 627 ~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
.++.. ...+......+.=+.|||.+. +|++|+.||.|-+|.+.++.....+.||..++++=.| .|+
T Consensus 136 stg~~-~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f-~pd 201 (399)
T KOG0296|consen 136 STGGE-QWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEF-IPD 201 (399)
T ss_pred ccCce-EEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccc-cCC
Confidence 99775 555555556788899999876 7779999999999999998889999999999999888 775
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=3.4e-15 Score=152.74 Aligned_cols=173 Identities=21% Similarity=0.306 Sum_probs=139.7
Q ss_pred EEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 005473 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (695)
Q Consensus 509 lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~ 588 (695)
++.|++...|.-|.......+ ......+++.++..+..|.++|+||+.+ +.++|+|+.|-+|+|||++...
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~-------~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKG-------CTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCccc-------cccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh
Confidence 466777777777755332211 1122335667778889999999999995 8999999999999999999998
Q ss_pred EEEEecccCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 005473 589 VKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (695)
Q Consensus 589 ~~~~l~~H~~~V~~v~~spdg~--~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir 666 (695)
.+..+-.|.+.|+++.|.+... .|++|+.||.|.+||+... .++.++.+|.+.|+.+++||.++ |..+.+.|+.++
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr 152 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLR 152 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCc-eEEEEcCCceee
Confidence 8889999999999999998654 8999999999999999986 57999999999999999999998 666888899999
Q ss_pred EEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 667 YWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 667 iWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
.||+-+|+.-.+..--..+ +.|.| .|
T Consensus 153 ~WNLV~Gr~a~v~~L~~~a-t~v~w-~~ 178 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKA-TLVSW-SP 178 (362)
T ss_pred eehhhcCccceeeccCCcc-eeeEE-cC
Confidence 9999888766665522211 44777 66
No 108
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.64 E-value=4.1e-15 Score=159.91 Aligned_cols=186 Identities=20% Similarity=0.274 Sum_probs=137.5
Q ss_pred CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEe-cCCCC
Q 005473 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTS 556 (695)
Q Consensus 478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l-~~H~~ 556 (695)
|+..++.+.+.+.| .-+++||.|-+|++|++..-.. . ++.++.| .....
T Consensus 166 gtk~Vsal~~Dp~G---------------aR~~sGs~Dy~v~~wDf~gMda-s--------------~~~fr~l~P~E~h 215 (641)
T KOG0772|consen 166 GTKIVSALAVDPSG---------------ARFVSGSLDYTVKFWDFQGMDA-S--------------MRSFRQLQPCETH 215 (641)
T ss_pred CceEEEEeeecCCC---------------ceeeeccccceEEEEecccccc-c--------------chhhhccCccccc
Confidence 44555555555555 4579999999999998754321 1 1111222 12334
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe------------cccCCCeEEEEEcCC-CCEEEEEeCCCeEEE
Q 005473 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------------EEHTQWITDVRFSPS-LSRLATSSADRTVRV 623 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l------------~~H~~~V~~v~~spd-g~~LaTgs~DgtIrv 623 (695)
.|.++.|++.|..|++.+..-.++|+|-...+.+... +||...++|.+|+|. ...|+|++.||++|+
T Consensus 216 ~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 216 QINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred ccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence 5899999999999888888889999997765554433 479999999999996 557899999999999
Q ss_pred EECCCCCeeEEEEe-----cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC--eEEEE-EecCCC--cEEEEEEeC
Q 005473 624 WDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGV-FKNFFE--SFVSVRVVQ 693 (695)
Q Consensus 624 WDl~t~~~~l~~~~-----gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg--~~v~~-~~~h~~--~VtsVaf~s 693 (695)
||+...+..+.++. +..-.|++++|++||+ +||+|..||.|.+||.+.. .+... -++|.. .|+||+| +
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F-S 373 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF-S 373 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe-c
Confidence 99988765444443 3334689999999999 5888999999999998643 23333 338877 9999999 8
Q ss_pred CC
Q 005473 694 PR 695 (695)
Q Consensus 694 Pd 695 (695)
++
T Consensus 374 ~d 375 (641)
T KOG0772|consen 374 YD 375 (641)
T ss_pred cc
Confidence 75
No 109
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=1.1e-15 Score=160.70 Aligned_cols=149 Identities=22% Similarity=0.374 Sum_probs=121.7
Q ss_pred eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCe
Q 005473 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (695)
Q Consensus 544 ~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t---~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dgt 620 (695)
+......+..|++.|.-|.||++|+|||+|+.|.++.||++.. .+.++++.+|..+|..|.|+||.++|++++.|..
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence 3455677889999999999999999999999999999998743 3557899999999999999999999999999999
Q ss_pred EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC-CcEEEEEEeCCC
Q 005473 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF-ESFVSVRVVQPR 695 (695)
Q Consensus 621 IrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~-~~VtsVaf~sPd 695 (695)
+++||+.++......-.+|...+.+++|+|||.. +++|+.|+.|..||++ |..+...++-. ..|.+|+. ++|
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlai-t~D 365 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAI-TYD 365 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCC-cchhhcccccccceeEEEEE-cCC
Confidence 9999999987522233345688999999999986 5599999999999987 44455555432 45666665 543
No 110
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.63 E-value=1.2e-14 Score=152.27 Aligned_cols=138 Identities=20% Similarity=0.258 Sum_probs=114.0
Q ss_pred cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC
Q 005473 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (695)
Q Consensus 474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~ 553 (695)
+...+..++-.+.|.|... ..+|+||.|.+|.+|..+++...++ ...++..|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD--------------~vIASgSeD~~v~vW~IPe~~l~~~------------ltepvv~L~g 129 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFND--------------CVIASGSEDTKVMVWQIPENGLTRD------------LTEPVVELYG 129 (472)
T ss_pred CccCccccccccccCccCC--------------ceeecCCCCceEEEEECCCcccccC------------cccceEEEee
Confidence 3344556677777777664 7899999999999998877643221 1256888999
Q ss_pred CCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 005473 554 STSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (695)
Q Consensus 554 H~~~V~~v~fspdg-~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~ 632 (695)
|...|-.|.|+|.. +.|++++.|.+|.|||+.+++.+.++. |.+.|++++|+.+|.+|+|++.|+.|||||.++++.
T Consensus 130 H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~- 207 (472)
T KOG0303|consen 130 HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV- 207 (472)
T ss_pred cceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE-
Confidence 99999999999964 589999999999999999999998888 999999999999999999999999999999998764
Q ss_pred EEEEecC
Q 005473 633 LRTFTGH 639 (695)
Q Consensus 633 l~~~~gh 639 (695)
+..-.+|
T Consensus 208 v~e~~~h 214 (472)
T KOG0303|consen 208 VSEGVAH 214 (472)
T ss_pred eeecccc
Confidence 4433344
No 111
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.62 E-value=1.7e-15 Score=151.58 Aligned_cols=145 Identities=19% Similarity=0.435 Sum_probs=125.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--ecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 005473 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 625 (695)
Q Consensus 549 ~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~--l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWD 625 (695)
..+.+|...|.+|+|+.+|+.|++|+.|+++.||+++....... ..+|++.|-.++|+| ...+|++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 44678999999999999999999999999999999987755443 478999999999988 467899999999999999
Q ss_pred CCCCCee-------------------------------------------------------------------------
Q 005473 626 TENPDYS------------------------------------------------------------------------- 632 (695)
Q Consensus 626 l~t~~~~------------------------------------------------------------------------- 632 (695)
++.++.+
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence 9854321
Q ss_pred --------EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 633 --------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 633 --------l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+..+..|...+.||.|+|+|+ +||+|+.|..|.+||+..--|++.|.-+.-+|..|.| +.|
T Consensus 174 LsypsLkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSF-S~d 242 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDELICERCISRLDWPVRTLSF-SHD 242 (313)
T ss_pred EeccccccccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHhhhheeeccccCceEEEEe-ccC
Confidence 233558888899999999998 7889999999999999999999999999999999999 643
No 112
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.62 E-value=3.2e-15 Score=156.57 Aligned_cols=134 Identities=22% Similarity=0.390 Sum_probs=117.9
Q ss_pred EEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-------CeEEEEecccCCCeEEEEEcCC-CCEEEEEeCC
Q 005473 548 FQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPS-LSRLATSSAD 618 (695)
Q Consensus 548 v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t-------~~~~~~l~~H~~~V~~v~~spd-g~~LaTgs~D 618 (695)
+-.+.||+++|..++|+| +...||||++|.+|.||.+.. .+++..+.+|...|-.|.|+|. .+.|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 345679999999999999 566899999999999999864 2567889999999999999995 5688999999
Q ss_pred CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCC
Q 005473 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFE 684 (695)
Q Consensus 619 gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~ 684 (695)
.+|.+||+.++.. +.++. |.+.|+++.|+.||. ++|+.+.|..|||||.++++.+..-.+|.+
T Consensus 154 n~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG 216 (472)
T KOG0303|consen 154 NTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEG 216 (472)
T ss_pred ceEEEEeccCCce-eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccC
Confidence 9999999999876 55555 999999999999998 788999999999999999999988887764
No 113
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.4e-14 Score=164.83 Aligned_cols=165 Identities=18% Similarity=0.320 Sum_probs=133.4
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (695)
Q Consensus 505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl 584 (695)
...+++.||.|-.|++....+. .....+++|+++|.+|.|+|.+++||+.+.||.|+|||+
T Consensus 107 ~g~~iaagsdD~~vK~~~~~D~-------------------s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 107 SGKMIAAGSDDTAVKLLNLDDS-------------------SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred CCcEEEeecCceeEEEEecccc-------------------chheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 3478999999999999855433 355778999999999999999999999999999999999
Q ss_pred CCCeEEEEeccc--------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe--cCCCCeEEEEEecCCCe
Q 005473 585 ESFTVKSTLEEH--------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKED 654 (695)
Q Consensus 585 ~t~~~~~~l~~H--------~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~--gh~~~V~sl~fspdg~~ 654 (695)
.++.+..++.+- ...+..++|+|++..|+..+.|++|++|+...... ...+. .|...++++.|+|+|.
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~-~f~Lr~~~~ss~~~~~~wsPnG~- 245 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL-QFKLRDKLSSSKFSDLQWSPNGK- 245 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee-heeecccccccceEEEEEcCCCc-
Confidence 998887766431 35567899999988888888999999999998664 33333 2334489999999998
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 655 LLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 655 llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+||+++.||.|.|||+.+-.. ......|++++| +|+
T Consensus 246 YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw-~p~ 281 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDTHER----HEFKRAVCCEAW-KPN 281 (933)
T ss_pred EEeeeccCCcEEEEecccchh----ccccceeEEEec-CCC
Confidence 677999999999999997211 234577888888 874
No 114
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.61 E-value=4.7e-15 Score=150.05 Aligned_cols=149 Identities=23% Similarity=0.398 Sum_probs=123.2
Q ss_pred ceeeeEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEe-----cccCCCeEEEEEcC--CCCEEE
Q 005473 543 FTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTL-----EEHTQWITDVRFSP--SLSRLA 613 (695)
Q Consensus 543 ~~~~~v~~l~-~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~-~~~l-----~~H~~~V~~v~~sp--dg~~La 613 (695)
.++.++..+. .+-+.|.||.|.|++..|++-. |..|.+|++..+.. +..+ .+|....++-+|+| ++..++
T Consensus 110 ~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 110 STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE
Confidence 3445555555 5667899999999999998876 88899999987654 3332 23566788889999 677887
Q ss_pred EEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEecCCCcEEEEEEe
Q 005473 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKNFFESFVSVRVV 692 (695)
Q Consensus 614 Tgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~ 692 (695)
+.+ |++++.||+|+.+.....-..|...|..++|+|+..++|++|+.||.|||||.|. ..++.++.+|+.+|++|+|
T Consensus 189 tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf- 266 (370)
T KOG1007|consen 189 TTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF- 266 (370)
T ss_pred EeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe-
Confidence 765 8999999999877645556688889999999999999999999999999999986 5689999999999999999
Q ss_pred CC
Q 005473 693 QP 694 (695)
Q Consensus 693 sP 694 (695)
+|
T Consensus 267 n~ 268 (370)
T KOG1007|consen 267 NP 268 (370)
T ss_pred cC
Confidence 88
No 115
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=7.2e-15 Score=159.92 Aligned_cols=181 Identities=17% Similarity=0.253 Sum_probs=146.3
Q ss_pred cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005473 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (695)
Q Consensus 502 l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~I 581 (695)
+...+.-+++++.|+++++|+..+. .......+.++.++++|.++|.|+++.+++..+++|+.||+|+.
T Consensus 302 ~~~sep~lit~sed~~lk~WnLqk~-----------~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 302 FHPSEPVLITASEDGTLKLWNLQKA-----------KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred cCCCCCeEEEeccccchhhhhhccc-----------CCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 4555688999999999999977332 13345677899999999999999999999999999999999999
Q ss_pred EECCC----------CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE------------------
Q 005473 582 WCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL------------------ 633 (695)
Q Consensus 582 WDl~t----------~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l------------------ 633 (695)
|++.. .....++.||++.|+.+++++...+|++++.||+||+|+......|+
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccc
Confidence 96531 13345788999999999999998899999999999999875432210
Q ss_pred -------------------------EEEec-------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec
Q 005473 634 -------------------------RTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN 681 (695)
Q Consensus 634 -------------------------~~~~g-------h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~ 681 (695)
..+.. -...+..+.++|..+ +.+++..|+.|+++|..+++.+....+
T Consensus 451 ~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~l~s~~a 529 (577)
T KOG0642|consen 451 RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKILHSMVA 529 (577)
T ss_pred hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCceecccccccccchheee
Confidence 00000 012355678899886 677999999999999999999999999
Q ss_pred CCCcEEEEEEeCCC
Q 005473 682 FFESFVSVRVVQPR 695 (695)
Q Consensus 682 h~~~VtsVaf~sPd 695 (695)
|...|+++++ .|+
T Consensus 530 ~~~svtslai-~~n 542 (577)
T KOG0642|consen 530 HKDSVTSLAI-DPN 542 (577)
T ss_pred ccceecceee-cCC
Confidence 9999999999 774
No 116
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.2e-14 Score=148.71 Aligned_cols=182 Identities=16% Similarity=0.268 Sum_probs=132.8
Q ss_pred ccccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCcc-------------------
Q 005473 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRV------------------- 533 (695)
Q Consensus 473 ~l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~------------------- 533 (695)
+....++..++++.|+.+| ..+++++.|++|++|...+-..-.-+.
T Consensus 80 ~~LKgH~~~vt~~~FsSdG---------------K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc 144 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDG---------------KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDC 144 (420)
T ss_pred hhhhccCCceeeeEEcCCC---------------ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCc
Confidence 3455677888899999888 678999999999999776532100000
Q ss_pred -ccccccCCCceee-----------------eEE---EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 005473 534 -GRSAEVGKGFTFT-----------------EFQ---LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST 592 (695)
Q Consensus 534 -~~~~d~~~~~~~~-----------------~v~---~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~ 592 (695)
.-+.....+..+. ++. .-+-|.-.|..+-....+++|++++.|.+|+|||++ |+.+..
T Consensus 145 ~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~ 223 (420)
T KOG2096|consen 145 KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS 223 (420)
T ss_pred ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee
Confidence 0000001111111 111 112344455666666788999999999999999998 888888
Q ss_pred ecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC---CCC----eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 005473 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (695)
Q Consensus 593 l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~---t~~----~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~I 665 (695)
+......-+..+.+|+|++|+++++.--|+||.+- .+. ..+..+.||.+.|..++|+++... +++.+.||++
T Consensus 224 idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r-~vtvSkDG~w 302 (420)
T KOG2096|consen 224 IDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR-AVTVSKDGKW 302 (420)
T ss_pred eccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce-eEEEecCCcE
Confidence 87777778899999999999999999999999873 222 135678899999999999999874 5599999999
Q ss_pred EEEECC
Q 005473 666 RYWSIN 671 (695)
Q Consensus 666 riWDl~ 671 (695)
||||++
T Consensus 303 riwdtd 308 (420)
T KOG2096|consen 303 RIWDTD 308 (420)
T ss_pred EEeecc
Confidence 999974
No 117
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=1.4e-14 Score=153.93 Aligned_cols=148 Identities=18% Similarity=0.297 Sum_probs=126.2
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 005473 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC 583 (695)
Q Consensus 505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWD 583 (695)
..+.|++||.|.+|++|+...+ ++..++..|.+.|.++.|+| ...+|++|+.|++|++.|
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g-------------------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTG-------------------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKD 315 (463)
T ss_pred cceeEEecCCCceEEEEEcCCC-------------------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeee
Confidence 3488999999999999977544 45667788999999999998 467999999999999999
Q ss_pred CCCCeEE-EEecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 005473 584 TESFTVK-STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (695)
Q Consensus 584 l~t~~~~-~~l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~ 661 (695)
++..... ..+. -.+.|..+.|.|. ...++++..||+|+-+|+|....++.++..|.+.|.+|+++..-+.++++++.
T Consensus 316 ~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~ 394 (463)
T KOG0270|consen 316 CRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAST 394 (463)
T ss_pred ccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccc
Confidence 9843222 2222 3568999999985 45678888999999999999988999999999999999999998999999999
Q ss_pred CCcEEEEECCC
Q 005473 662 NSEIRYWSINN 672 (695)
Q Consensus 662 Dg~IriWDl~t 672 (695)
|+.|++|++..
T Consensus 395 d~~Vklw~~~~ 405 (463)
T KOG0270|consen 395 DKVVKLWKFDV 405 (463)
T ss_pred cceEEEEeecC
Confidence 99999999864
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=6.1e-15 Score=146.42 Aligned_cols=171 Identities=21% Similarity=0.352 Sum_probs=135.3
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWC 583 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd--g~~LaSgs~Dg~V~IWD 583 (695)
..+|+++++|+.|-+|.... -.+........|...|++|+|.|. |-.|++|+.||+|.|.+
T Consensus 70 G~iLAScsYDgkVIiWke~~-----------------g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~ 132 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEEN-----------------GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLT 132 (299)
T ss_pred CcEeeEeecCceEEEEecCC-----------------CchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEE
Confidence 48999999999999994432 244556667789999999999985 45899999999999998
Q ss_pred CCCC---eEEEEecccCCCeEEEEEcCC---C-----------CEEEEEeCCCeEEEEECCCCCee-EEEEecCCCCeEE
Q 005473 584 TESF---TVKSTLEEHTQWITDVRFSPS---L-----------SRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMS 645 (695)
Q Consensus 584 l~t~---~~~~~l~~H~~~V~~v~~spd---g-----------~~LaTgs~DgtIrvWDl~t~~~~-l~~~~gh~~~V~s 645 (695)
+++. ...+....|.-.|++++|.|. | ..|++|+.|..|+||+..++... ..++.+|.+.|+.
T Consensus 133 ~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRD 212 (299)
T KOG1332|consen 133 YDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRD 212 (299)
T ss_pred EcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhh
Confidence 8754 233456789999999999985 4 56999999999999999886542 3569999999999
Q ss_pred EEEecCC---CeEEEEEeCCCcEEEEECCCC--e-EEEEEecCCCcEEEEEEeCC
Q 005473 646 LDFHPSK---EDLLCSCDNNSEIRYWSINNG--S-CAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 646 l~fspdg---~~llaSgs~Dg~IriWDl~tg--~-~v~~~~~h~~~VtsVaf~sP 694 (695)
++|+|.- ...+++|+.||+|.||-.+.. . ....++...+.|..+.| ++
T Consensus 213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSW-S~ 266 (299)
T KOG1332|consen 213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSW-SL 266 (299)
T ss_pred hhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEE-ec
Confidence 9999963 457899999999999988732 1 12233345677888888 65
No 119
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=3.2e-14 Score=145.42 Aligned_cols=141 Identities=19% Similarity=0.301 Sum_probs=111.7
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005473 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (695)
Q Consensus 549 ~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t 628 (695)
..+-.|..+|.||.+++....+++|+.|++|++||.+...++.++.. ...|+|+... +..|+.|+.|..|.+||+++
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 44567999999999999888999999999999999987555555543 3478888775 66888888889999999875
Q ss_pred CCee-----------------------------------------------EEEEecCCC---------CeEEEEEecCC
Q 005473 629 PDYS-----------------------------------------------LRTFTGHST---------TVMSLDFHPSK 652 (695)
Q Consensus 629 ~~~~-----------------------------------------------l~~~~gh~~---------~V~sl~fspdg 652 (695)
.... ...|++|.. +|.+++|||-.
T Consensus 165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 3210 122445532 48899999986
Q ss_pred CeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 653 ~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
. .|+||+.||.|.+||+.+.+.+..|......|.+++| +-
T Consensus 245 ~-tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsf-s~ 284 (323)
T KOG1036|consen 245 G-TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSF-SM 284 (323)
T ss_pred c-eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEe-cc
Confidence 5 6789999999999999999999988877788889988 53
No 120
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.60 E-value=1.4e-14 Score=147.02 Aligned_cols=160 Identities=26% Similarity=0.357 Sum_probs=126.8
Q ss_pred CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 005473 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (695)
Q Consensus 480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~ 559 (695)
-.++.+.|-|..+ .++.++|+|.++++|+...- .+...++ -.+.|+
T Consensus 102 y~iss~~WyP~Dt--------------GmFtssSFDhtlKVWDtnTl-------------------Q~a~~F~-me~~VY 147 (397)
T KOG4283|consen 102 YAISSAIWYPIDT--------------GMFTSSSFDHTLKVWDTNTL-------------------QEAVDFK-MEGKVY 147 (397)
T ss_pred eeeeeeEEeeecC--------------ceeecccccceEEEeecccc-------------------eeeEEee-cCceee
Confidence 3566677777554 57889999999999966432 1222221 234588
Q ss_pred EEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeeEEE
Q 005473 560 SCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRT 635 (695)
Q Consensus 560 ~v~fsp---dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~-LaTgs~DgtIrvWDl~t~~~~l~~ 635 (695)
+-+|+| .-.+||+|..|-.|+++|+..|.+.+++.||.+.|.+|.|+|...+ |+||+.||.||+||++...-|+.+
T Consensus 148 shamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~ 227 (397)
T KOG4283|consen 148 SHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRV 227 (397)
T ss_pred hhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEE
Confidence 888888 3458889999999999999999999999999999999999997665 699999999999999876445554
Q ss_pred Ee--------------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe
Q 005473 636 FT--------------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (695)
Q Consensus 636 ~~--------------gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~ 674 (695)
+. .|.+.|..++|..++.+ +++++.|..+++|+..+|+
T Consensus 228 lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 228 LDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDDRIRVWNMESGR 279 (397)
T ss_pred eecccCccCccccccccccceeeeeeecccchh-hhhccCccceEEeecccCc
Confidence 43 56678999999999985 5588889999999998764
No 121
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.59 E-value=1.8e-14 Score=147.83 Aligned_cols=190 Identities=17% Similarity=0.257 Sum_probs=146.5
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCC------------------------------CCCccccccccCCCceeeeEEEec
Q 005473 503 TDMDRFVDDGSLDDNVESFLSPDDAD------------------------------PRDRVGRSAEVGKGFTFTEFQLIP 552 (695)
Q Consensus 503 ~~~~~~lasgS~D~~V~lw~~~~~~~------------------------------~~~~~~~~~d~~~~~~~~~v~~l~ 552 (695)
.+...++++.+.|.-|++|++.++.. +..+..++.+....-..-++....
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhh
Confidence 44557888899999999998876531 111122333332111111111111
Q ss_pred -----CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEE
Q 005473 553 -----ASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWD 625 (695)
Q Consensus 553 -----~H~~~V~~v~fspd-g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-DgtIrvWD 625 (695)
+-.+-|.|++|+|- .+.++.|+....+-||.-....++..+.+|.+.|+.++|.++|+.|++|+. |-.|.+||
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD 279 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence 23667899999995 459999999999999999999999999999999999999999999999975 77899999
Q ss_pred CCCCCeeEEEEecCCC-CeEEE--EEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEecCCCcEEEEEEeCC
Q 005473 626 TENPDYSLRTFTGHST-TVMSL--DFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 626 l~t~~~~l~~~~gh~~-~V~sl--~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sP 694 (695)
+|..+.++..+..|.+ .--.| +..|++. +|++|+.||.|++||+++ |..+.++..|++.|..|++ ||
T Consensus 280 iR~~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl-nP 350 (406)
T KOG2919|consen 280 IRYSRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL-NP 350 (406)
T ss_pred ehhccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCcccccccccccccceec-Cc
Confidence 9988877888888876 22334 4467777 788999999999999998 8889999999999999999 98
No 122
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.58 E-value=2.3e-14 Score=152.78 Aligned_cols=162 Identities=19% Similarity=0.277 Sum_probs=138.1
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
+|+++|+.|..|.+|+..+. .++.++++|.+.|.+++|-.....|++++.|.+|+||+++.
T Consensus 215 kylatgg~d~~v~Iw~~~t~-------------------ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTL-------------------EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred cEEEecCCCceEEEecCccc-------------------chhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence 89999999999999955332 46677899999999999988888899999999999999999
Q ss_pred CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 005473 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (695)
Q Consensus 587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir 666 (695)
...+.++.+|.+.|..|....-.+.+-+|+.|+++++|++... .--.|.+|.+.+-|++|-.+. -|++|+.||.|.
T Consensus 276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~In~~--HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIA 351 (479)
T ss_pred hHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEeccc--ceeeccCCceEE
Confidence 9999999999999999988776667777779999999999543 346788999999999998764 356999999999
Q ss_pred EEECCCCeEEEEEe-cCC---C--------cEEEEEE
Q 005473 667 YWSINNGSCAGVFK-NFF---E--------SFVSVRV 691 (695)
Q Consensus 667 iWDl~tg~~v~~~~-~h~---~--------~VtsVaf 691 (695)
+|++-+.+++.+.. +|. . +|++|+.
T Consensus 352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~ 388 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAV 388 (479)
T ss_pred EeeecccCceeEeeccccccCCccccccccceeeeEe
Confidence 99999999998877 342 2 6777775
No 123
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.58 E-value=1.8e-14 Score=146.83 Aligned_cols=134 Identities=17% Similarity=0.365 Sum_probs=111.0
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEE-EEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 005473 554 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (695)
Q Consensus 554 H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t-~~~~-~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~ 630 (695)
-.+.|.+|+||| ...+|+.++.|++||+|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 456799999999 556777999999999999976 3332 3456799999999999999999999999999999999874
Q ss_pred eeEEEEecCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEE
Q 005473 631 YSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVR 690 (695)
Q Consensus 631 ~~l~~~~gh~~~V~sl~fspdg~-~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVa 690 (695)
+..+..|.+.|.++.|-+... .+|++|+.|.+|++||.|...++.++.-. +.|.++.
T Consensus 106 --~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~D 163 (347)
T KOG0647|consen 106 --VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAAD 163 (347)
T ss_pred --eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehh
Confidence 577888999999999976543 37789999999999999998888877644 3444443
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.2e-13 Score=157.25 Aligned_cols=200 Identities=20% Similarity=0.304 Sum_probs=148.8
Q ss_pred CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCC-CCCCCcc--c----cccccCC----C--ce
Q 005473 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD-ADPRDRV--G----RSAEVGK----G--FT 544 (695)
Q Consensus 478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~-~~~~~~~--~----~~~d~~~----~--~~ 544 (695)
+..-.+.+.|.++| .|+++++.|+.|+.|....+ .+++... + .+..... + ..
T Consensus 12 ht~G~t~i~~d~~g---------------efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~ 76 (933)
T KOG1274|consen 12 HTGGLTLICYDPDG---------------EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQN 76 (933)
T ss_pred ccCceEEEEEcCCC---------------CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccc
Confidence 33446677777766 68999999999999977665 3332221 1 0000000 0 00
Q ss_pred eeeE---------EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEE
Q 005473 545 FTEF---------QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615 (695)
Q Consensus 545 ~~~v---------~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTg 615 (695)
.-.+ ..+...+-++.+|+|+-+|+++|.|+.|-.|++-++.+...++++++|.++|.++.|+|.+.+||+.
T Consensus 77 tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 77 TVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVS 156 (933)
T ss_pred eEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEE
Confidence 0011 1222335578999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEECCCCCeeEEEEecC--------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe--cCCCc
Q 005473 616 SADRTVRVWDTENPDYSLRTFTGH--------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--NFFES 685 (695)
Q Consensus 616 s~DgtIrvWDl~t~~~~l~~~~gh--------~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~--~h~~~ 685 (695)
+.||.|+|||+.++.. ..++.+- ...++.++|+|+|..+++.+ .|+.|++|+....+....+. .|...
T Consensus 157 s~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~~f~Lr~~~~ss~ 234 (933)
T KOG1274|consen 157 SCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDNTVKVYSRKGWELQFKLRDKLSSSK 234 (933)
T ss_pred ecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCeEEeec-cCCeEEEEccCCceeheeecccccccc
Confidence 9999999999997653 4443321 34567889999987666554 58999999999999888877 34556
Q ss_pred EEEEEEeCCC
Q 005473 686 FVSVRVVQPR 695 (695)
Q Consensus 686 VtsVaf~sPd 695 (695)
+..+.| +|.
T Consensus 235 ~~~~~w-sPn 243 (933)
T KOG1274|consen 235 FSDLQW-SPN 243 (933)
T ss_pred eEEEEE-cCC
Confidence 999999 985
No 125
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.1e-14 Score=169.25 Aligned_cols=171 Identities=22% Similarity=0.383 Sum_probs=141.5
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE 585 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd-g~~LaSgs~Dg~V~IWDl~ 585 (695)
+++|+|+.||.|.+|+...-..+ +... -....+.|.|++|+.. ...|++++.+|++.|||++
T Consensus 130 nlLASGa~~geI~iWDlnn~~tP-------------~~~~----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr 192 (1049)
T KOG0307|consen 130 NLLASGADDGEILIWDLNKPETP-------------FTPG----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR 192 (1049)
T ss_pred ceeeccCCCCcEEEeccCCcCCC-------------CCCC----CCCCcccceEeccchhhhHHhhccCCCCCceecccc
Confidence 69999999999999977543211 0000 1123456999999874 4578999999999999999
Q ss_pred CCeEEEEecccCC--CeEEEEEcCCC-CEEEEEeCCC---eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEE
Q 005473 586 SFTVKSTLEEHTQ--WITDVRFSPSL-SRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (695)
Q Consensus 586 t~~~~~~l~~H~~--~V~~v~~spdg-~~LaTgs~Dg---tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSg 659 (695)
..+.+..+..|.+ .+..+.|+|+. ..|++++.|. .|.+||+|....+++++.+|...|.+|+|++.+..++++|
T Consensus 193 ~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSs 272 (1049)
T KOG0307|consen 193 KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSS 272 (1049)
T ss_pred CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcc
Confidence 9888877766654 47789999974 4666666544 5999999998888999999999999999999998899999
Q ss_pred eCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 660 DNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 660 s~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+.|+.|.+|+..+++.+..+....+++..|.| .|+
T Consensus 273 gkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w-~pr 307 (1049)
T KOG0307|consen 273 GKDNRIICWNPNTGEVLGELPAQGNWCFDVQW-CPR 307 (1049)
T ss_pred cCCCCeeEecCCCceEeeecCCCCcceeeeee-cCC
Confidence 99999999999999999999998999999999 885
No 126
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.57 E-value=4.6e-14 Score=142.98 Aligned_cols=181 Identities=19% Similarity=0.335 Sum_probs=141.7
Q ss_pred CceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 005473 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (695)
Q Consensus 481 ~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~ 560 (695)
.+.++.|.|++. -+++- .|..|.+|....... +...+.... -.+|....++
T Consensus 125 ~i~cvew~Pns~---------------klasm-~dn~i~l~~l~ess~---~vaev~ss~----------s~e~~~~fts 175 (370)
T KOG1007|consen 125 KINCVEWEPNSD---------------KLASM-DDNNIVLWSLDESSK---IVAEVLSSE----------SAEMRHSFTS 175 (370)
T ss_pred ceeeEEEcCCCC---------------eeEEe-ccCceEEEEcccCcc---hheeecccc----------cccccceecc
Confidence 678999999664 23333 388899996644321 111111111 1125666888
Q ss_pred EEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEe-cccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473 561 CHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTF 636 (695)
Q Consensus 561 v~fsp--dg~~LaSgs~Dg~V~IWDl~t~~~~~~l-~~H~~~V~~v~~spdg~-~LaTgs~DgtIrvWDl~t~~~~l~~~ 636 (695)
-+|+| +|+.+++.+ |+++..||+++.++...+ .+|...|.++.|+|+.. +|+|+++||.|||||+|..+.++..+
T Consensus 176 g~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el 254 (370)
T KOG1007|consen 176 GAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL 254 (370)
T ss_pred cccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc
Confidence 99998 788887766 899999999998877666 57889999999999754 68999999999999999999999999
Q ss_pred ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-----------------------------eEEEEEecCCCcEE
Q 005473 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-----------------------------SCAGVFKNFFESFV 687 (695)
Q Consensus 637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg-----------------------------~~v~~~~~h~~~Vt 687 (695)
.+|..+|++|.|+|....|+.+|+.|..|.+|....- ..+.++..|.+.|.
T Consensus 255 ~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY 334 (370)
T KOG1007|consen 255 PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVY 334 (370)
T ss_pred CCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceE
Confidence 9999999999999998889999999999999975311 12457888999999
Q ss_pred EEEE
Q 005473 688 SVRV 691 (695)
Q Consensus 688 sVaf 691 (695)
+++|
T Consensus 335 ~~aW 338 (370)
T KOG1007|consen 335 ALAW 338 (370)
T ss_pred EEee
Confidence 9999
No 127
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.56 E-value=5.4e-15 Score=155.64 Aligned_cols=178 Identities=20% Similarity=0.306 Sum_probs=145.6
Q ss_pred CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (695)
Q Consensus 478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~ 557 (695)
+...+..+.|.++. ..+++|+.|..|++|..... ....+.++.+..+.
T Consensus 174 h~gev~~v~~l~~s---------------dtlatgg~Dr~Ik~W~v~~~-----------------k~~~~~tLaGs~g~ 221 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNS---------------DTLATGGSDRIIKLWNVLGE-----------------KSELISTLAGSLGN 221 (459)
T ss_pred cccccceeEEccCc---------------chhhhcchhhhhhhhhcccc-----------------hhhhhhhhhccCCC
Confidence 44455666666543 45799999999999966433 12456677888899
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~ 637 (695)
|+.+.|.++++.++++++|+.+++|++.......++.+|++.|+++.|.-....+++|+.|.+|++||+.. .+|.+++.
T Consensus 222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-~~C~kt~l 300 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-AYCSKTVL 300 (459)
T ss_pred cceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-hheecccc
Confidence 99999999999999999999999999999999999999999999999988766699999999999999997 44566554
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 638 gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
. .+.+..|+.. ...+++|-.|+.||+||+++..++.+...|. .|++|.. ++
T Consensus 301 ~-~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~l-s~ 351 (459)
T KOG0288|consen 301 P-GSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDL-SM 351 (459)
T ss_pred c-cccccceEec---ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEee-cc
Confidence 2 3455666655 2356799999999999999999999998885 8999887 55
No 128
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.56 E-value=2e-14 Score=149.32 Aligned_cols=216 Identities=14% Similarity=0.219 Sum_probs=154.7
Q ss_pred ccccCCCCCceEEEEecCCCccccccC------CccCCCCcEEEEeeCCCcEEEEeCCCCC-------------C-----
Q 005473 473 TLQHNGASSKSLLMFGSDGMGSLTSAP------NQLTDMDRFVDDGSLDDNVESFLSPDDA-------------D----- 528 (695)
Q Consensus 473 ~l~~s~s~~~s~l~~~~dg~~~la~s~------~~l~~~~~~lasgS~D~~V~lw~~~~~~-------------~----- 528 (695)
...++|+.+..++.|+...-.++.... ..+.-....+.+++.|.+|+.|...... +
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~ 159 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKN 159 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeeecccccccccccccc
Confidence 345667888888888876532211110 0111112556778899999999643210 0
Q ss_pred ----CCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEE
Q 005473 529 ----PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603 (695)
Q Consensus 529 ----~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v 603 (695)
.......+|+... ..++..+.-..+.|.||.|+|... .|++|+.|+.|.|||++...++..+.- +..-+.|
T Consensus 160 ~~FaTcGe~i~IWD~~R---~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~I 235 (433)
T KOG0268|consen 160 SVFATCGEQIDIWDEQR---DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTI 235 (433)
T ss_pred ccccccCceeeeccccc---CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccce
Confidence 0011123444333 356666777778899999999655 678888999999999999998876642 4456789
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cC
Q 005473 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-NF 682 (695)
Q Consensus 604 ~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~h 682 (695)
+|+|++-.+++|+.|..++.||++.-..++..+.+|.+.|++|+|+|.|..+ ++|+.|.+||||.++.+..-..+. .-
T Consensus 236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef-vsgsyDksIRIf~~~~~~SRdiYhtkR 314 (433)
T KOG0268|consen 236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF-VSGSYDKSIRIFPVNHGHSRDIYHTKR 314 (433)
T ss_pred ecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh-ccccccceEEEeecCCCcchhhhhHhh
Confidence 9999877889999999999999999888899999999999999999999964 599999999999998765433331 11
Q ss_pred CCcEEEEEEeCC
Q 005473 683 FESFVSVRVVQP 694 (695)
Q Consensus 683 ~~~VtsVaf~sP 694 (695)
-..|.+|.| +-
T Consensus 315 Mq~V~~Vk~-S~ 325 (433)
T KOG0268|consen 315 MQHVFCVKY-SM 325 (433)
T ss_pred hheeeEEEE-ec
Confidence 245677877 53
No 129
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=5.3e-13 Score=136.48 Aligned_cols=188 Identities=19% Similarity=0.301 Sum_probs=141.4
Q ss_pred CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (695)
Q Consensus 477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~ 556 (695)
.+.+-+.++.|...| +-+++||.|.+|++|++.++ ..++.+....+.|.+
T Consensus 11 ~h~DlihdVs~D~~G---------------RRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wrah~~ 60 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYG---------------RRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRAHDG 60 (361)
T ss_pred CCcceeeeeeecccC---------------ceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEecCC
Confidence 334445666666655 77899999999999986433 235667778899999
Q ss_pred CeEEEEEcC--CCCEEEEEeCCCcEEEEECC---------CCeEEEEecccCCCeEEEEEcCC--CCEEEEEeCCCeEEE
Q 005473 557 KVESCHFSP--DGKLLATGGHDKKAVLWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 623 (695)
Q Consensus 557 ~V~~v~fsp--dg~~LaSgs~Dg~V~IWDl~---------t~~~~~~l~~H~~~V~~v~~spd--g~~LaTgs~DgtIrv 623 (695)
.|..|.|.+ -|..+|+++.|++|.||.-. ......++....+.|++|.|.|. |-.||+++.||+|||
T Consensus 61 Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRI 140 (361)
T KOG2445|consen 61 SIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRI 140 (361)
T ss_pred cEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEE
Confidence 999999965 48899999999999999641 12344566677899999999994 778999999999999
Q ss_pred EECCCCCee-----EEEE-------ecCCCCeEEEEEecC--CCeEEEEEeCC-----CcEEEEECCCC--e--EEEEEe
Q 005473 624 WDTENPDYS-----LRTF-------TGHSTTVMSLDFHPS--KEDLLCSCDNN-----SEIRYWSINNG--S--CAGVFK 680 (695)
Q Consensus 624 WDl~t~~~~-----l~~~-------~gh~~~V~sl~fspd--g~~llaSgs~D-----g~IriWDl~tg--~--~v~~~~ 680 (695)
|+.-..... ...+ ..+.....||.|+|. .+.+|+.|+.+ +.+.||....+ + .+.++.
T Consensus 141 YEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~ 220 (361)
T KOG2445|consen 141 YEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP 220 (361)
T ss_pred EecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC
Confidence 998764321 1111 245667899999975 23467677644 48899987653 2 456677
Q ss_pred cCCCcEEEEEEeCCC
Q 005473 681 NFFESFVSVRVVQPR 695 (695)
Q Consensus 681 ~h~~~VtsVaf~sPd 695 (695)
+|+++|+.|+| .|+
T Consensus 221 d~~dpI~di~w-APn 234 (361)
T KOG2445|consen 221 DHTDPIRDISW-APN 234 (361)
T ss_pred CCCCcceeeee-ccc
Confidence 99999999999 985
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.4e-13 Score=147.14 Aligned_cols=165 Identities=20% Similarity=0.334 Sum_probs=137.2
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~ 585 (695)
..|++.|+..+++.+|....+ ..+..+.+|-..|+|+.|+.||.+|+||+.||.|.+|++-
T Consensus 93 G~~l~ag~i~g~lYlWelssG-------------------~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSG-------------------ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred ceEEEeecccCcEEEEEeccc-------------------cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 378888889999999966544 2345567899999999999999999999999999999762
Q ss_pred ---------CCeEEEEecccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCe
Q 005473 586 ---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (695)
Q Consensus 586 ---------t~~~~~~l~~H~~~V~~v~~spd--g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~ 654 (695)
+.++++.|..|+-+|+++...+. ..+|+|+|.|.++|+||+..+.. +.++. ....+.+++.+|-+.
T Consensus 154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L-Llti~-fp~si~av~lDpae~- 230 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL-LLTIT-FPSSIKAVALDPAER- 230 (476)
T ss_pred eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee-eEEEe-cCCcceeEEEccccc-
Confidence 45678899999999999998764 46899999999999999998765 44444 356799999999977
Q ss_pred EEEEEeCCCcEEEEECCC----------------CeEEEEEecCCC--cEEEEEEeC
Q 005473 655 LLCSCDNNSEIRYWSINN----------------GSCAGVFKNFFE--SFVSVRVVQ 693 (695)
Q Consensus 655 llaSgs~Dg~IriWDl~t----------------g~~v~~~~~h~~--~VtsVaf~s 693 (695)
.++.|+.+|.|.+.++.+ +..+..+.||.+ .|+|+++ +
T Consensus 231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai-s 286 (476)
T KOG0646|consen 231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI-S 286 (476)
T ss_pred EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE-e
Confidence 566999999999998753 235678889998 9999987 5
No 131
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=5e-14 Score=144.15 Aligned_cols=131 Identities=21% Similarity=0.376 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~ 637 (695)
..||.|++-|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++|+++|++|+|+|.|..|++||+..+. ++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence 6899999999999999999999999999999989999999999999999999999999999999999998876 333322
Q ss_pred cCCCCeEE-----------------------------------------------EEEecCCCeEEEEEeCCCcEEEEEC
Q 005473 638 GHSTTVMS-----------------------------------------------LDFHPSKEDLLCSCDNNSEIRYWSI 670 (695)
Q Consensus 638 gh~~~V~s-----------------------------------------------l~fspdg~~llaSgs~Dg~IriWDl 670 (695)
..+.|+. ..|++.|+ ++++|...|.+.|+|.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGTSKGKLLVYDA 182 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEEEecCcceEEEEec
Confidence 1122222 23555666 5569999999999999
Q ss_pred CCCeEEEEEecCC-CcEEEEEE
Q 005473 671 NNGSCAGVFKNFF-ESFVSVRV 691 (695)
Q Consensus 671 ~tg~~v~~~~~h~-~~VtsVaf 691 (695)
.+-+|+..++-.+ ..|..|.|
T Consensus 183 ~t~e~vas~rits~~~IK~I~~ 204 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIV 204 (405)
T ss_pred chheeeeeeeechheeeeEEEE
Confidence 9999999998665 66776665
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.55 E-value=8.3e-14 Score=157.06 Aligned_cols=172 Identities=22% Similarity=0.309 Sum_probs=145.4
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005473 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (695)
Q Consensus 503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IW 582 (695)
....+|+..|...|+|.+|+...+.. ...+..-..|.++|+.++...-++.+++++.||.+++|
T Consensus 457 s~CGNF~~IG~S~G~Id~fNmQSGi~----------------r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw 520 (910)
T KOG1539|consen 457 SFCGNFVFIGYSKGTIDRFNMQSGIH----------------RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFW 520 (910)
T ss_pred eccCceEEEeccCCeEEEEEcccCee----------------ecccccCccccCceeEEEecCCCceEEEccCcceEEEE
Confidence 44558888888999999997765521 01111225799999999999999999999999999999
Q ss_pred ECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (695)
Q Consensus 583 Dl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D 662 (695)
|..+...+..+.- ...+.++.++.....++.+.+|-.|+|+|+.+.+. ++.|.||...|++++|+|||++++ +++.|
T Consensus 521 ~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv-vR~f~gh~nritd~~FS~DgrWli-sasmD 597 (910)
T KOG1539|consen 521 DFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV-VREFWGHGNRITDMTFSPDGRWLI-SASMD 597 (910)
T ss_pred ecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh-hHHhhccccceeeeEeCCCCcEEE-EeecC
Confidence 9998887777753 56788999998888999999999999999998665 899999999999999999999655 88889
Q ss_pred CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 663 SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 663 g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
++||+||+.++.++-.+. -..++++|.| +|+
T Consensus 598 ~tIr~wDlpt~~lID~~~-vd~~~~sls~-SPn 628 (910)
T KOG1539|consen 598 STIRTWDLPTGTLIDGLL-VDSPCTSLSF-SPN 628 (910)
T ss_pred CcEEEEeccCcceeeeEe-cCCcceeeEE-CCC
Confidence 999999999999999885 4567899999 985
No 133
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.55 E-value=5.9e-14 Score=150.48 Aligned_cols=123 Identities=22% Similarity=0.442 Sum_probs=105.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 005473 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (695)
Q Consensus 555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~--~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~ 632 (695)
...|.+|...|||+.|++|++-.+|.|||+..-.+. ..+..-.-.+++++.+||.++.++++.||.|.|||+++.. .
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-L 543 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-e
Confidence 456999999999999999999999999999765443 2333333567889999999999999999999999999855 5
Q ss_pred EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE
Q 005473 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (695)
Q Consensus 633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~ 679 (695)
++.|.||.+.+.||++++||..|+ +|+-|.+||.||+++++.+..+
T Consensus 544 VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqh 589 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQH 589 (705)
T ss_pred eecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhh
Confidence 999999999999999999999776 9999999999999998765443
No 134
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.54 E-value=5.4e-14 Score=149.86 Aligned_cols=196 Identities=14% Similarity=0.132 Sum_probs=156.3
Q ss_pred ccccccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEE
Q 005473 471 RPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL 550 (695)
Q Consensus 471 ~~~l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~ 550 (695)
..++.......++++.|||... ..+|++|..-|.|-+|++.... ....-+..
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~-------------~~lva~GdK~G~VG~Wn~~~~~---------------~d~d~v~~ 229 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTEN-------------RKLVAVGDKGGQVGLWNFGTQE---------------KDKDGVYL 229 (498)
T ss_pred ecceeEecccceEEEEecccCc-------------ceEEEEccCCCcEEEEecCCCC---------------CccCceEE
Confidence 3355556677899999999553 2789999999999999874211 11234566
Q ss_pred ecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEe--cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473 551 IPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (695)
Q Consensus 551 l~~H~~~V~~v~fspdg-~~LaSgs~Dg~V~IWDl~t~~~~~~l--~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~ 627 (695)
+..|..+|.++.|+|.. ..|++.+.||+|++-|+++......+ ......+..+.|+.+...++++..=|.+.+||++
T Consensus 230 f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R 309 (498)
T KOG4328|consen 230 FTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLR 309 (498)
T ss_pred eccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEee
Confidence 78899999999999954 47999999999999999876543333 3345667788898888888888777799999999
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC--e--EEEEEecCCCcEEEEEEeCCC
Q 005473 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--S--CAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg--~--~v~~~~~h~~~VtsVaf~sPd 695 (695)
+++..+..+.-|+..|++|+++|..++++++|+.|++++|||+|.- + ++.....|+..|.+..| +|+
T Consensus 310 ~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyF-SPs 380 (498)
T KOG4328|consen 310 TDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYF-SPS 380 (498)
T ss_pred cCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEE-cCC
Confidence 9876677778899999999999999999999999999999999852 2 33444489999999999 995
No 135
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.53 E-value=9.6e-14 Score=146.21 Aligned_cols=155 Identities=23% Similarity=0.389 Sum_probs=131.1
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE- 585 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~- 585 (695)
.++++|+.|..|++|....+..+. ..........+..|...|++|.|+|+|.+||||+++|.|.+|-..
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~~~----------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~ 96 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEPGG----------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGD 96 (434)
T ss_pred cceecccCccceeeeeeeecCCCC----------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecC
Confidence 489999999999999776543221 113556778889999999999999999999999999999999544
Q ss_pred -------C--------CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEec
Q 005473 586 -------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650 (695)
Q Consensus 586 -------t--------~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fsp 650 (695)
+ ....+++.+|...|++++|+|++.++++++.|.++++||+..+.. +..+.+|...|..++|.|
T Consensus 97 ~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgvawDp 175 (434)
T KOG1009|consen 97 VRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVAWDP 175 (434)
T ss_pred cCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee-Eeeccccccccceeecch
Confidence 3 334567789999999999999999999999999999999999775 899999999999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCC
Q 005473 651 SKEDLLCSCDNNSEIRYWSINNG 673 (695)
Q Consensus 651 dg~~llaSgs~Dg~IriWDl~tg 673 (695)
... ++++-+.|...+++++...
T Consensus 176 l~q-yv~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 176 LNQ-YVASKSSDRHPEGFSAKLK 197 (434)
T ss_pred hhh-hhhhhccCcccceeeeeee
Confidence 987 5667777887888887643
No 136
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.53 E-value=2.8e-13 Score=145.21 Aligned_cols=168 Identities=20% Similarity=0.293 Sum_probs=131.5
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 005473 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWC 583 (695)
Q Consensus 505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWD 583 (695)
.+.++|+++..|.|-+.....+. +. +++. .+....|.-+.|++..+ +|.+++++|.|.+||
T Consensus 132 ~DeyiAsvs~gGdiiih~~~t~~-------------~t---t~f~--~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 132 TDEYIASVSDGGDIIIHGTKTKQ-------------KT---TTFT--IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred CcceeEEeccCCcEEEEecccCc-------------cc---ccee--cCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 34788888888877776443221 11 1111 12234577899999776 677889999999999
Q ss_pred CCCCeEEEEe-cccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 005473 584 TESFTVKSTL-EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (695)
Q Consensus 584 l~t~~~~~~l-~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~ 661 (695)
+....++..+ +.|..+...|+|+|. ..+|++.+.|+.|.+||++.... ..++. ...+.++|+|.++|. +||.|..
T Consensus 194 v~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s-~~~l~-y~~Plstvaf~~~G~-~L~aG~s 270 (673)
T KOG4378|consen 194 VQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS-TDRLT-YSHPLSTVAFSECGT-YLCAGNS 270 (673)
T ss_pred ccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-cceee-ecCCcceeeecCCce-EEEeecC
Confidence 9888777665 789999999999995 55789999999999999996443 44443 345789999999987 7889999
Q ss_pred CCcEEEEECCC-CeEEEEEecCCCcEEEEEEeCC
Q 005473 662 NSEIRYWSINN-GSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 662 Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sP 694 (695)
.|.|..||++. ..++.++.+|...|++|+| .|
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf-q~ 303 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAF-QP 303 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEe-ee
Confidence 99999999985 5789999999999999999 76
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.52 E-value=5.8e-14 Score=150.49 Aligned_cols=169 Identities=17% Similarity=0.174 Sum_probs=131.4
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (695)
Q Consensus 504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD 583 (695)
...+-+.+|+.-.+|.+|+..... .+....+....-.+++++.+||.++.++++.||.|.|||
T Consensus 475 pdgrtLivGGeastlsiWDLAapT-----------------prikaeltssapaCyALa~spDakvcFsccsdGnI~vwD 537 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPT-----------------PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWD 537 (705)
T ss_pred CCCceEEeccccceeeeeeccCCC-----------------cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEE
Confidence 334566777777888888553221 111122223333477899999999999999999999999
Q ss_pred CCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (695)
Q Consensus 584 l~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg 663 (695)
+.+...++.|.||++.+.||.++++|..|.||+-|.+||.||+++++.. ... ...+-|+++..+|++.+ ++.|-+++
T Consensus 538 Lhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql-qqh-dF~SQIfSLg~cP~~dW-lavGMens 614 (705)
T KOG0639|consen 538 LHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL-QQH-DFSSQIFSLGYCPTGDW-LAVGMENS 614 (705)
T ss_pred cccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh-hhh-hhhhhheecccCCCccc-eeeecccC
Confidence 9999999999999999999999999999999999999999999987652 221 13467999999999985 55888899
Q ss_pred cEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 664 EIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 664 ~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
.|.|-.... ..-.-+.-|...|.++.| .+
T Consensus 615 ~vevlh~sk-p~kyqlhlheScVLSlKF-a~ 643 (705)
T KOG0639|consen 615 NVEVLHTSK-PEKYQLHLHESCVLSLKF-AY 643 (705)
T ss_pred cEEEEecCC-ccceeecccccEEEEEEe-cc
Confidence 888877654 334445578999999999 65
No 138
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.52 E-value=4.2e-14 Score=146.96 Aligned_cols=184 Identities=20% Similarity=0.279 Sum_probs=138.2
Q ss_pred eEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEE
Q 005473 483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCH 562 (695)
Q Consensus 483 s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~ 562 (695)
..+..|-||..+|+-.++.+ ..+++|+.||.|++|+... ..+..++.+|.+.|..|+
T Consensus 60 ~~L~gHrdGV~~lakhp~~l----s~~aSGs~DG~VkiWnlsq-------------------R~~~~~f~AH~G~V~Gi~ 116 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKL----STVASGSCDGEVKIWNLSQ-------------------RECIRTFKAHEGLVRGIC 116 (433)
T ss_pred hhccccccccchhhcCcchh----hhhhccccCceEEEEehhh-------------------hhhhheeecccCceeeEE
Confidence 34466777776666666543 4569999999999996532 245677889999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCC---------------------------Ce-----------EEEEecccCCCeEEEE
Q 005473 563 FSPDGKLLATGGHDKKAVLWCTES---------------------------FT-----------VKSTLEEHTQWITDVR 604 (695)
Q Consensus 563 fspdg~~LaSgs~Dg~V~IWDl~t---------------------------~~-----------~~~~l~~H~~~V~~v~ 604 (695)
+.. ..+++++.|++|+.|-++. |+ ++..+.--.+.|.++.
T Consensus 117 v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svk 194 (433)
T KOG0268|consen 117 VTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVK 194 (433)
T ss_pred ecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEe
Confidence 976 6788888899999886421 11 2222222345678899
Q ss_pred EcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEecC
Q 005473 605 FSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKNF 682 (695)
Q Consensus 605 ~spd-g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~~h 682 (695)
|+|. ...|++++.|+.|.|||++.....-+... .-....|+|+|. ...|++|++|..++.||++. ..++.++++|
T Consensus 195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~~p~~v~~dh 271 (433)
T KOG0268|consen 195 FNPVETSILASCASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNPE-AFNFVAANEDHNLYTYDMRNLSRPLNVHKDH 271 (433)
T ss_pred cCCCcchheeeeccCCceEEEecccCCccceeee--eccccceecCcc-ccceeeccccccceehhhhhhcccchhhccc
Confidence 9995 45778888999999999998775323332 234678999995 45778999999999999987 5789999999
Q ss_pred CCcEEEEEEeCCC
Q 005473 683 FESFVSVRVVQPR 695 (695)
Q Consensus 683 ~~~VtsVaf~sPd 695 (695)
.+.|.+|+| +|.
T Consensus 272 vsAV~dVdf-spt 283 (433)
T KOG0268|consen 272 VSAVMDVDF-SPT 283 (433)
T ss_pred ceeEEEecc-CCC
Confidence 999999999 984
No 139
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.49 E-value=9.8e-14 Score=151.87 Aligned_cols=153 Identities=18% Similarity=0.228 Sum_probs=124.6
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~ 585 (695)
.-++.++.|+.|++|....+.. ......+.+.+.+|..+|+++.|+| -..+|+++++|.+|+|||+.
T Consensus 641 ~rLAVa~ddg~i~lWr~~a~gl------------~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 641 ERLAVATDDGQINLWRLTANGL------------PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred HHeeecccCceEEEEEeccCCC------------CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 5678899999999997765532 1233456678899999999999999 45689999999999999999
Q ss_pred CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCeEEEEEe---C
Q 005473 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCD---N 661 (695)
Q Consensus 586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~-~~V~sl~fspdg~~llaSgs---~ 661 (695)
+++....+.+|++.|..++|+|+|++++|.|.||+|+||+.+.+..++..-.+.. ...-.|.|.-||.+++|+|- .
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S 788 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS 788 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccc
Confidence 9999999999999999999999999999999999999999998777666554433 23456788889998887764 2
Q ss_pred CCcEEEEECC
Q 005473 662 NSEIRYWSIN 671 (695)
Q Consensus 662 Dg~IriWDl~ 671 (695)
...|.+||..
T Consensus 789 eRQv~~Y~Aq 798 (1012)
T KOG1445|consen 789 ERQVQMYDAQ 798 (1012)
T ss_pred hhhhhhhhhh
Confidence 3456677654
No 140
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.49 E-value=3.6e-13 Score=144.41 Aligned_cols=197 Identities=17% Similarity=0.231 Sum_probs=154.6
Q ss_pred CCCCCceEEEEecCCCccccccCCc-----------cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCcee
Q 005473 477 NGASSKSLLMFGSDGMGSLTSAPNQ-----------LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (695)
Q Consensus 477 s~s~~~s~l~~~~dg~~~la~s~~~-----------l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~ 545 (695)
+...++.+..|..++. .-.++... +...+.++++|+..+.|++|+....
T Consensus 52 s~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k------------------- 111 (673)
T KOG4378|consen 52 SMAGDKVMRIKEKDGK-TPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK------------------- 111 (673)
T ss_pred ecCCceeEEEecccCC-CCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHH-------------------
Confidence 3456777777777765 11111111 1233478999999999999965322
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccc-CCCeEEEEEcCCCC-EEEEEeCCCeEEE
Q 005473 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLS-RLATSSADRTVRV 623 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H-~~~V~~v~~spdg~-~LaTgs~DgtIrv 623 (695)
.+.+.+++|.+.|+||.|+....|||+++..|.|.|..+.++.....|... ...|.-++|+|..+ +|.+++++|.|.+
T Consensus 112 l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtl 191 (673)
T KOG4378|consen 112 LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTL 191 (673)
T ss_pred HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEE
Confidence 345677899999999999999999999999999999999988877777544 34566899999765 4678899999999
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 624 WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
||+............|..+...|||+|..+.||++.+.|..|.+||++....+..+. ...+.++|+| .|+
T Consensus 192 wDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf-~~~ 261 (673)
T KOG4378|consen 192 WDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAF-SEC 261 (673)
T ss_pred EeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeee-cCC
Confidence 999876654566778999999999999999999999999999999999877777764 4467788998 764
No 141
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=6.9e-13 Score=136.31 Aligned_cols=144 Identities=24% Similarity=0.369 Sum_probs=122.1
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC--CCeEEE
Q 005473 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRV 623 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~--DgtIrv 623 (695)
++.+.++.-.+.|+++.|+.+|.+|++++.|-+|+|||+.+++.++++..++..|..++|-.....++.++. |.+||.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 344455556778999999999999999999999999999999999999988889999999776666666665 889999
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 624 WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
.++.+.+. ++.|.||...|.+++.+|-++ .+++++.|++||+||++..+|...+.....+ .+|| +|
T Consensus 85 Lsl~dNky-lRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~Af-Dp 150 (311)
T KOG1446|consen 85 LSLHDNKY-LRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAF-DP 150 (311)
T ss_pred EEeecCce-EEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecCCCc--ceeE-CC
Confidence 99998775 999999999999999999986 5669999999999999988888777644333 3455 55
No 142
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.49 E-value=2.7e-13 Score=150.15 Aligned_cols=167 Identities=19% Similarity=0.358 Sum_probs=134.4
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEE
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWC 583 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp---dg~~LaSgs~Dg~V~IWD 583 (695)
..+++|..-|++++++... ......+.+|...|.|+.|+. ..++||+|+.|..|.|||
T Consensus 472 qhLAsGDr~GnlrVy~Lq~-------------------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~D 532 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQE-------------------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYD 532 (1080)
T ss_pred ceecccCccCceEEEEehh-------------------hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence 7889999999999995422 234556789999999999987 457999999999999999
Q ss_pred CCC-CeEEEEecccC-------------------------------------------------CCeEEEEEcCCCCEEE
Q 005473 584 TES-FTVKSTLEEHT-------------------------------------------------QWITDVRFSPSLSRLA 613 (695)
Q Consensus 584 l~t-~~~~~~l~~H~-------------------------------------------------~~V~~v~~spdg~~La 613 (695)
+.. ..++.++.+|. ..+++++..|..++++
T Consensus 533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~ 612 (1080)
T KOG1408|consen 533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV 612 (1080)
T ss_pred cccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence 852 12222233332 3466777777778999
Q ss_pred EEeCCCeEEEEECCCCCeeEEEEec---CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEE
Q 005473 614 TSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVR 690 (695)
Q Consensus 614 Tgs~DgtIrvWDl~t~~~~l~~~~g---h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVa 690 (695)
+++.|+.|+|||+.+++. ++.|++ |.+....|...|.|- ++++...|.++.|+|+-+|+|+....||+..|+.|.
T Consensus 613 t~cQDrnirif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgi-Y~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 613 TVCQDRNIRIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGI-YLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVK 690 (1080)
T ss_pred EEecccceEEEeccccce-eeeecccccCCCceEEEEECCCcc-EEEEeecCCceEEEEeccchhhhhhcCcchheeeee
Confidence 999999999999999875 677764 667788899999987 555666699999999999999999999999999999
Q ss_pred EeCCC
Q 005473 691 VVQPR 695 (695)
Q Consensus 691 f~sPd 695 (695)
| .+|
T Consensus 691 F-~nD 694 (1080)
T KOG1408|consen 691 F-LND 694 (1080)
T ss_pred e-ccc
Confidence 9 775
No 143
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=2.8e-13 Score=143.61 Aligned_cols=167 Identities=19% Similarity=0.207 Sum_probs=129.9
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
..+++|+.|+++|+|.++.. ..+.....|...|.+++|+|||++|++-+.| ..+||++++
T Consensus 157 s~latgg~dg~lRv~~~Ps~-------------------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 157 SKLATGGTDGTLRVWEWPSM-------------------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT 216 (398)
T ss_pred CEeeeccccceEEEEecCcc-------------------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc
Confidence 67899999999999976543 2334456788899999999999999999999 899999999
Q ss_pred CeEEEEec--ccCCCeEEEEEcCCC-----CEEEEEeCCCeEEEEECCCCCe----eEEEEecCCCCeEEEEEecCCCeE
Q 005473 587 FTVKSTLE--EHTQWITDVRFSPSL-----SRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDL 655 (695)
Q Consensus 587 ~~~~~~l~--~H~~~V~~v~~spdg-----~~LaTgs~DgtIrvWDl~t~~~----~l~~~~gh~~~V~sl~fspdg~~l 655 (695)
+.++.... +....+..|+|+-++ .+++.....+.|++||+...+. ..+....-...|++++.+++|+ +
T Consensus 217 g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f 295 (398)
T KOG0771|consen 217 GAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-F 295 (398)
T ss_pred CchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-E
Confidence 97766554 234456778888776 2333344566788887754332 2222222334699999999998 8
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEe-cCCCcEEEEEEeCCC
Q 005473 656 LCSCDNNSEIRYWSINNGSCAGVFK-NFFESFVSVRVVQPR 695 (695)
Q Consensus 656 laSgs~Dg~IriWDl~tg~~v~~~~-~h~~~VtsVaf~sPd 695 (695)
++.|+.||.|-|++..+-+++..++ +|..-||.|.| .|+
T Consensus 296 ~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF-~Pd 335 (398)
T KOG0771|consen 296 LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTF-SPD 335 (398)
T ss_pred EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEE-cCC
Confidence 8899999999999999988888887 89999999999 996
No 144
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.49 E-value=3.6e-13 Score=149.26 Aligned_cols=185 Identities=21% Similarity=0.281 Sum_probs=136.0
Q ss_pred EEEEeeCCCcEEEEeCCCCCCC----CCccc--------------cccccCCCceeeeEEEecCCCCCeEEEEEcCCCCE
Q 005473 508 FVDDGSLDDNVESFLSPDDADP----RDRVG--------------RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL 569 (695)
Q Consensus 508 ~lasgS~D~~V~lw~~~~~~~~----~~~~~--------------~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~ 569 (695)
.+.++|.|++|++|+....... +..+. -+.+...+.--+......+..-.|.|++++|+|.+
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 4678999999999987652211 11110 01111111111112222344556999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE
Q 005473 570 LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (695)
Q Consensus 570 LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~sp---dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl 646 (695)
||+|...|+++|||+...+....+++|...|.|+.|+. ..++|++++.|+-|+|||+...-.++.++.+|.+.|++|
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv 553 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV 553 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence 99999999999999999999999999999999999985 356899999999999999986555567777777777777
Q ss_pred EEec-------------------------------------------------CCCeEEEEEeCCCcEEEEECCCCeEEE
Q 005473 647 DFHP-------------------------------------------------SKEDLLCSCDNNSEIRYWSINNGSCAG 677 (695)
Q Consensus 647 ~fsp-------------------------------------------------dg~~llaSgs~Dg~IriWDl~tg~~v~ 677 (695)
.|.- ..+ ++++++.|..|||||+.+|+.++
T Consensus 554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sgKq~k 632 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESGKQVK 632 (1080)
T ss_pred EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEeccccceee
Confidence 6643 323 45788899999999999999999
Q ss_pred EEec---CCCcEEEEEEeCC
Q 005473 678 VFKN---FFESFVSVRVVQP 694 (695)
Q Consensus 678 ~~~~---h~~~VtsVaf~sP 694 (695)
.|++ |.+....|.. .|
T Consensus 633 ~FKgs~~~eG~lIKv~l-DP 651 (1080)
T KOG1408|consen 633 SFKGSRDHEGDLIKVIL-DP 651 (1080)
T ss_pred eecccccCCCceEEEEE-CC
Confidence 9994 5555666655 55
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1.5e-12 Score=144.50 Aligned_cols=204 Identities=16% Similarity=0.212 Sum_probs=150.1
Q ss_pred CceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCC-------CCCcc--------------------
Q 005473 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD-------PRDRV-------------------- 533 (695)
Q Consensus 481 ~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~-------~~~~~-------------------- 533 (695)
.+.-+.|.|.+..+++.+... +-+|.+-.|++|++|+...+.. +.++.
T Consensus 17 rcrf~d~~Ps~I~slA~s~kS-----~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~ 91 (691)
T KOG2048|consen 17 RCRFVDYKPSEIVSLAYSHKS-----NQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGS 91 (691)
T ss_pred EEEEEeeeccceEEEEEeccC-----CceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCce
Confidence 344556666666666655543 5578888899999987654321 11111
Q ss_pred ccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEecccCCCeEEEEEcCCCCE
Q 005473 534 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSR 611 (695)
Q Consensus 534 ~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~--~~l~~H~~~V~~v~~spdg~~ 611 (695)
...||..+ .+....+....+.|.+++.+|.+..++.|++||.+.+++...++.. +.|...++.|.++.|+|++..
T Consensus 92 i~EwDl~~---lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~ 168 (691)
T KOG2048|consen 92 ITEWDLHT---LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK 168 (691)
T ss_pred EEEEeccc---CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE
Confidence 12222222 2445556667788999999999999999999998888888776654 344455799999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCeeE-E---EEe---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCC
Q 005473 612 LATSSADRTVRVWDTENPDYSL-R---TFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFE 684 (695)
Q Consensus 612 LaTgs~DgtIrvWDl~t~~~~l-~---~~~---gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~ 684 (695)
|++|+.||.|++||+..+.... . ... +...-|++|.|-.++ .+++|+.-|+|.+||...|..+..++.|..
T Consensus 169 i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a 246 (691)
T KOG2048|consen 169 IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDA 246 (691)
T ss_pred EEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhc
Confidence 9999999999999999876522 1 111 122347889888665 577999999999999999999999999999
Q ss_pred cEEEEEEeCCC
Q 005473 685 SFVSVRVVQPR 695 (695)
Q Consensus 685 ~VtsVaf~sPd 695 (695)
.|.+++. .++
T Consensus 247 dVl~Lav-~~~ 256 (691)
T KOG2048|consen 247 DVLALAV-ADN 256 (691)
T ss_pred ceeEEEE-cCC
Confidence 9999987 653
No 146
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.47 E-value=8.7e-13 Score=133.92 Aligned_cols=196 Identities=18% Similarity=0.260 Sum_probs=144.1
Q ss_pred CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (695)
Q Consensus 477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~ 556 (695)
.+.-+.+.+.|.|+..+. ..+++|+. +..+++|...++. .......+....+ -..+..
T Consensus 94 d~~YP~tK~~wiPd~~g~----------~pdlLATs--~D~LRlWri~~ee-~~~~~~~~L~~~k---------ns~~~a 151 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGV----------YPDLLATS--SDFLRLWRIGDEE-SRVELQSVLNNNK---------NSEFCA 151 (364)
T ss_pred CCCCCccceEecCCcccc----------Ccchhhcc--cCeEEEEeccCcC-CceehhhhhccCc---------ccccCC
Confidence 344577788888877521 11556654 4689999775431 1111111111111 134567
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe---EEEEecccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCe
Q 005473 557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDY 631 (695)
Q Consensus 557 ~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~~---~~~~l~~H~~~V~~v~~spdg-~~LaTgs~DgtIrvWDl~t~~~ 631 (695)
++++..|+. |-++|.+++-|.++.|||++++. ....+.+|...|++|+|...+ ..||+.+.||.||+||+|....
T Consensus 152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH 231 (364)
T KOG0290|consen 152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH 231 (364)
T ss_pred cccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence 899999987 67799999999999999999863 466788999999999999854 4689999999999999998665
Q ss_pred eEEEEecC--CCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCC-CeEEEEEecCCCcEEEEEEeCCC
Q 005473 632 SLRTFTGH--STTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINN-GSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 632 ~l~~~~gh--~~~V~sl~fspdg~~llaSgs~D-g~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sPd 695 (695)
..-.+... ......++|++...+++|+-..| ..|.|-|+|. ..++..+.+|.+.|..|+| +|.
T Consensus 232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaW-aPh 298 (364)
T KOG0290|consen 232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAW-APH 298 (364)
T ss_pred ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEe-cCC
Confidence 33344432 35678899999888888776544 5699999996 5788999999999999999 983
No 147
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.47 E-value=8.3e-12 Score=130.07 Aligned_cols=134 Identities=15% Similarity=0.100 Sum_probs=104.2
Q ss_pred CeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEecccC-------CCeEEEEEcCCCCEEEE-EeCCCeEEEEECC
Q 005473 557 KVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPSLSRLAT-SSADRTVRVWDTE 627 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSg-s~Dg~V~IWDl~t~~~~~~l~~H~-------~~V~~v~~spdg~~LaT-gs~DgtIrvWDl~ 627 (695)
.+.++.|++++++|+.+ ..|+.|++||+++++++..+..+. .....++|+|+++++++ .+.++.|.+||++
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 35789999999988554 469999999999988877664321 12356889999998655 4557789999998
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
+.+. +..+. +...+.+++|+|+|..++++++.++.|++||+++++++..++.+. ..+.|+| +|
T Consensus 238 ~~~~-~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~-~~ 300 (300)
T TIGR03866 238 TYEV-LDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR-LPWGVVV-RP 300 (300)
T ss_pred CCcE-EEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc-ccceeEe-CC
Confidence 7654 44332 445799999999999776566679999999999999999998764 4499998 76
No 148
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.3e-12 Score=139.59 Aligned_cols=202 Identities=15% Similarity=0.204 Sum_probs=149.4
Q ss_pred cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCC--------------------------
Q 005473 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA-------------------------- 527 (695)
Q Consensus 474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~-------------------------- 527 (695)
..+.....++++.|||.. .++.+++.|+++++|-+....
T Consensus 208 a~~ps~~~I~sv~FHp~~---------------plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~ 272 (514)
T KOG2055|consen 208 AAHPSHGGITSVQFHPTA---------------PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSV 272 (514)
T ss_pred cCCcCcCCceEEEecCCC---------------ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceE
Confidence 333344566677777654 456667777777777543321
Q ss_pred ---CCCCccccccccCCCceeeeEEEecCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEE
Q 005473 528 ---DPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603 (695)
Q Consensus 528 ---~~~~~~~~~~d~~~~~~~~~v~~l~~H~-~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v 603 (695)
.++.++...|+..++ .+..++.+.++. ..+....+++++++|+.+|..|.|.|....+++.+.+++- .+.|.++
T Consensus 273 i~~s~rrky~ysyDle~a-k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~ 350 (514)
T KOG2055|consen 273 IFTSGRRKYLYSYDLETA-KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDF 350 (514)
T ss_pred EEecccceEEEEeecccc-ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeE
Confidence 122233344554443 223344444544 3467888999999999999999999999999999888874 6889999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEECC------CCeEE
Q 005473 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------NGSCA 676 (695)
Q Consensus 604 ~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~-~~V~sl~fspdg~~llaSgs~Dg~IriWDl~------tg~~v 676 (695)
+|+.+++.|+.++.+|.|++||++... |+..+.... -.-+++|.++++. +||+|+..|.|.|||.. +.+++
T Consensus 351 ~fsSdsk~l~~~~~~GeV~v~nl~~~~-~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPi 428 (514)
T KOG2055|consen 351 TFSSDSKELLASGGTGEVYVWNLRQNS-CLHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPI 428 (514)
T ss_pred EEecCCcEEEEEcCCceEEEEecCCcc-eEEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCch
Confidence 999999999999999999999999864 577776432 2346777788988 88899999999999965 35788
Q ss_pred EEEecCCCcEEEEEEeCCC
Q 005473 677 GVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 677 ~~~~~h~~~VtsVaf~sPd 695 (695)
..+..-+..|++|.| +||
T Consensus 429 k~~dNLtt~Itsl~F-n~d 446 (514)
T KOG2055|consen 429 KTVDNLTTAITSLQF-NHD 446 (514)
T ss_pred hhhhhhheeeeeeee-Ccc
Confidence 888888899999999 886
No 149
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.46 E-value=7.5e-13 Score=134.42 Aligned_cols=170 Identities=13% Similarity=0.207 Sum_probs=135.8
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTE 585 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~ 585 (695)
+++.+.|.|.+..+|+...+. .......+.+|...|..|+|..++. .||+.|.||.||+||++
T Consensus 164 ~~igtSSiDTTCTiWdie~~~----------------~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETGV----------------SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ceeEeecccCeEEEEEEeecc----------------ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 788999999999999765431 1123455779999999999998665 89999999999999999
Q ss_pred CCeEEEEeccc---CCCeEEEEEcC-CCCEEEEEeCC-CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 005473 586 SFTVKSTLEEH---TQWITDVRFSP-SLSRLATSSAD-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (695)
Q Consensus 586 t~~~~~~l~~H---~~~V~~v~~sp-dg~~LaTgs~D-gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs 660 (695)
..+.-..+.+. ..+...++|++ |-+++||-..| ..|.|.|+|.+..++..+.+|.+.|..++|.|.....||+|+
T Consensus 228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG 307 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG 307 (364)
T ss_pred ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC
Confidence 87766555332 45778889988 45677876555 569999999998899999999999999999999999999999
Q ss_pred CCCcEEEEECCCC------eEEEEEecCCCcEEEEEEeCC
Q 005473 661 NNSEIRYWSINNG------SCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 661 ~Dg~IriWDl~tg------~~v~~~~~h~~~VtsVaf~sP 694 (695)
.|..+.|||+..- .++..+. ..+.|..|.| +|
T Consensus 308 DD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~W-s~ 345 (364)
T KOG0290|consen 308 DDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQW-SS 345 (364)
T ss_pred CcceEEEEecccccccCCCCchhhhh-ccceeeeeee-cc
Confidence 9999999999642 2344444 4467788888 64
No 150
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.46 E-value=1.9e-13 Score=151.66 Aligned_cols=147 Identities=20% Similarity=0.340 Sum_probs=126.4
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCe
Q 005473 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~D-----g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dgt 620 (695)
.+++.+.||...|+||+.+|++++|||++.. -.|+||+..+...+..+.+|.-.|+.++|+||+++|++.|.|++
T Consensus 516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce
Confidence 4567778999999999999999999999864 35899999998888899999999999999999999999999999
Q ss_pred EEEEECCCCCee---EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC--eEEEE--EecCCCcEEEEEEeC
Q 005473 621 VRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGV--FKNFFESFVSVRVVQ 693 (695)
Q Consensus 621 IrvWDl~t~~~~---l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg--~~v~~--~~~h~~~VtsVaf~s 693 (695)
+.+|........ ......|+.-|++++|+|++. .|++++.|.+|.||..... +++.. ...++.+|++|+| .
T Consensus 596 ~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~-~ 673 (764)
T KOG1063|consen 596 VSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAY-L 673 (764)
T ss_pred EEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEe-e
Confidence 999988654322 234678999999999999987 5889999999999999877 55544 3378899999999 7
Q ss_pred C
Q 005473 694 P 694 (695)
Q Consensus 694 P 694 (695)
|
T Consensus 674 ~ 674 (764)
T KOG1063|consen 674 P 674 (764)
T ss_pred c
Confidence 6
No 151
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.45 E-value=9.6e-13 Score=142.60 Aligned_cols=179 Identities=17% Similarity=0.180 Sum_probs=131.9
Q ss_pred CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCC---CCCC--------ccccccccCCCceeeeE
Q 005473 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA---DPRD--------RVGRSAEVGKGFTFTEF 548 (695)
Q Consensus 480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~---~~~~--------~~~~~~d~~~~~~~~~v 548 (695)
..++++.|-+.+. ..+...=+++++.+++..... .+.. .....+... ..-.++
T Consensus 220 tsvT~ikWvpg~~--------------~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk--~~rNPv 283 (636)
T KOG2394|consen 220 SSVTCIKWVPGSD--------------SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSK--KTRNPV 283 (636)
T ss_pred cceEEEEEEeCCC--------------ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeecc--ccCCcc
Confidence 6788888888654 333444477888887442111 0000 000111111 111334
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005473 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (695)
Q Consensus 549 ~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t 628 (695)
..+.-..+.|..++|+|||++||+.+.||.+||||..+.+++..++..-+...||+|+|||++|+||+.|--|.||.+..
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 44444556899999999999999999999999999999888888877778899999999999999999999999999998
Q ss_pred CCeeEEEEecCCCCeEEEEEec-----------------------------------C------------CCeEEEEEeC
Q 005473 629 PDYSLRTFTGHSTTVMSLDFHP-----------------------------------S------------KEDLLCSCDN 661 (695)
Q Consensus 629 ~~~~l~~~~gh~~~V~sl~fsp-----------------------------------d------------g~~llaSgs~ 661 (695)
.+. +..-.||+++|..|+|+| + -.+-|.+.+.
T Consensus 364 rRV-VARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGq 442 (636)
T KOG2394|consen 364 RRV-VARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQ 442 (636)
T ss_pred ceE-EEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccc
Confidence 664 888899999999999984 0 1234667788
Q ss_pred CCcEEEEECCCCeE
Q 005473 662 NSEIRYWSINNGSC 675 (695)
Q Consensus 662 Dg~IriWDl~tg~~ 675 (695)
|..+.+||+.....
T Consensus 443 DTqlcLWDlteD~L 456 (636)
T KOG2394|consen 443 DTQLCLWDLTEDVL 456 (636)
T ss_pred cceEEEEecchhhc
Confidence 99999999976433
No 152
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=2.2e-12 Score=132.25 Aligned_cols=166 Identities=17% Similarity=0.245 Sum_probs=122.4
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
.++|.|+.||.|.+|+... ++..+.+.+|..+|.|++||+||++|++++.|..|.+||+..
T Consensus 36 ~~lAvGc~nG~vvI~D~~T-------------------~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 36 DYLAVGCANGRVVIYDFDT-------------------FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred ceeeeeccCCcEEEEEccc-------------------cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence 7899999999999996632 234456789999999999999999999999999999999987
Q ss_pred CeEEEEecccCCCe-----------------------------------------------EEEEEcCCCCEEEEEeCCC
Q 005473 587 FTVKSTLEEHTQWI-----------------------------------------------TDVRFSPSLSRLATSSADR 619 (695)
Q Consensus 587 ~~~~~~l~~H~~~V-----------------------------------------------~~v~~spdg~~LaTgs~Dg 619 (695)
+.++..++- .++| .+..|.+.|+++++|...|
T Consensus 97 gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKG 175 (405)
T KOG1273|consen 97 GSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKG 175 (405)
T ss_pred CCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcc
Confidence 766554431 1111 1122555678889998889
Q ss_pred eEEEEECCCCCeeEEEEe---------------------------------------cCCCCe---------------EE
Q 005473 620 TVRVWDTENPDYSLRTFT---------------------------------------GHSTTV---------------MS 645 (695)
Q Consensus 620 tIrvWDl~t~~~~l~~~~---------------------------------------gh~~~V---------------~s 645 (695)
.+.|+|..+-+ |+..++ +..+.+ .+
T Consensus 176 kllv~~a~t~e-~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 176 KLLVYDAETLE-CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred eEEEEecchhe-eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 99999887643 222111 011111 26
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC-CcEEEEEEeCC
Q 005473 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF-ESFVSVRVVQP 694 (695)
Q Consensus 646 l~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~-~~VtsVaf~sP 694 (695)
++|+.+|.+++++...-..++||.-..|..++.+.|.. .....|.| ||
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~w-hp 303 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNW-HP 303 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccc-cc
Confidence 78888988777666677889999999999999998877 56677888 76
No 153
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.45 E-value=7.6e-14 Score=156.90 Aligned_cols=165 Identities=25% Similarity=0.363 Sum_probs=136.9
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
++|.+|+.|..|++|...+. .+....+||.+.|+.++.+.+..++++++.|+.|++|.+.+
T Consensus 203 ~~Iitgsdd~lvKiwS~et~-------------------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 203 RYIITGSDDRLVKIWSMETA-------------------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred ceEeecCccceeeeeeccch-------------------hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 89999999999999954332 45677789999999999999999999999999999999999
Q ss_pred CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCC--------------e--------------------
Q 005473 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPD--------------Y-------------------- 631 (695)
Q Consensus 587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~-t~~--------------~-------------------- 631 (695)
+.++..+.+|++.|++|+|+|- .+.+.||++++||.+ ... .
T Consensus 264 ~~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred CchHHHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence 9999999999999999999984 377889999999987 000 0
Q ss_pred --------------------------------------e---------EEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473 632 --------------------------------------S---------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (695)
Q Consensus 632 --------------------------------------~---------l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~ 664 (695)
| +..+.+|...+..+.+||-.+.+..+++.||.
T Consensus 340 a~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs 419 (1113)
T KOG0644|consen 340 ARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS 419 (1113)
T ss_pred cccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc
Confidence 0 01123677889999999999988899999999
Q ss_pred EEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 665 IRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 665 IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+.|||+-.|.+++.+....+.+..-+| +++
T Consensus 420 t~iwdi~eg~pik~y~~gh~kl~d~kF-Sqd 449 (1113)
T KOG0644|consen 420 TIIWDIWEGIPIKHYFIGHGKLVDGKF-SQD 449 (1113)
T ss_pred eEeeecccCCcceeeecccceeecccc-CCC
Confidence 999999999888776644456666777 654
No 154
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.44 E-value=1.5e-11 Score=128.20 Aligned_cols=163 Identities=12% Similarity=0.070 Sum_probs=119.2
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 585 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~L-aSgs~Dg~V~IWDl~ 585 (695)
.++++++.|+.|++|+...+ ..+..+..+.. +.+++|+|+++.+ ++++.|+.|++||+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~-------------------~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL-------------------EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred cEEEEecCCCEEEEEECCCC-------------------ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 56788899999999965322 23344444443 6789999999976 566788999999999
Q ss_pred CCeEEEEecccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC-C
Q 005473 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S 663 (695)
Q Consensus 586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTg-s~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D-g 663 (695)
+++.+..+..+.. +..++|+|+++.++++ +.|+.|++||+++.. .+..+.. ...+.+++|+|++..++ +++.+ .
T Consensus 62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~~-~~~~~~~~~~~dg~~l~-~~~~~~~ 137 (300)
T TIGR03866 62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIPV-GVEPEGMAVSPDGKIVV-NTSETTN 137 (300)
T ss_pred CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEeeC-CCCcceEEECCCCCEEE-EEecCCC
Confidence 9888877765544 5688999999877654 568999999999755 3555542 34578899999998555 55544 4
Q ss_pred cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 664 EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 664 ~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
.+++||.++++++..+... ..+.+++| +|+
T Consensus 138 ~~~~~d~~~~~~~~~~~~~-~~~~~~~~-s~d 167 (300)
T TIGR03866 138 MAHFIDTKTYEIVDNVLVD-QRPRFAEF-TAD 167 (300)
T ss_pred eEEEEeCCCCeEEEEEEcC-CCccEEEE-CCC
Confidence 6788899988887665433 33467888 764
No 155
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=2.3e-12 Score=128.04 Aligned_cols=164 Identities=15% Similarity=0.176 Sum_probs=121.6
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005473 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (695)
Q Consensus 503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IW 582 (695)
.+..+|++.|+.+|.|.++....-..+.. .......+...++|.++|+.++|. ..+|++|+ ||.|+-|
T Consensus 19 sp~~~~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 19 SPSKQYLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW 86 (325)
T ss_pred CCcceEEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence 34458999999999999985543211110 111223455568999999999998 45777777 6999998
Q ss_pred ECCCCeE------EE--EecccC-----CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEe
Q 005473 583 CTESFTV------KS--TLEEHT-----QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649 (695)
Q Consensus 583 Dl~t~~~------~~--~l~~H~-----~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fs 649 (695)
-.+.... +. ....|. -.|+++-..|..+-+++++.|+.++.||+++++. .++++||++.|-++.-.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i-~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI-QREYRGHTDYVHSVVGR 165 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE-EEEEcCCcceeeeeeec
Confidence 7643221 11 111232 3588999999877777777899999999999886 79999999999999984
Q ss_pred cCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 650 pdg~~llaSgs~Dg~IriWDl~tg~~v~~~~ 680 (695)
.....+| +|++||++||||+++++++..+.
T Consensus 166 ~~~~qil-sG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 166 NANGQIL-SGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred ccCccee-ecCCCccEEEEeccccceeEEec
Confidence 4444355 99999999999999999998887
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.44 E-value=3e-11 Score=127.50 Aligned_cols=166 Identities=29% Similarity=0.484 Sum_probs=134.7
Q ss_pred cEEEEeeC-CCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC
Q 005473 507 RFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT 584 (695)
Q Consensus 507 ~~lasgS~-D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl 584 (695)
.+++.++. |+.+++|.... ...+..+.+|...|.+++|+|++. ++++++.|+.|++||.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~ 228 (466)
T COG2319 168 KLLASGSSLDGTIKLWDLRT-------------------GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228 (466)
T ss_pred CEEEecCCCCCceEEEEcCC-------------------CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEEC
Confidence 46666664 99999996543 235566677999999999999998 5666699999999999
Q ss_pred CCCeEEE-EecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473 585 ESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (695)
Q Consensus 585 ~t~~~~~-~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg 663 (695)
..+..+. .+.+|...+ ...|+|++.++++++.|+.+++||++.....+..+.+|...|.++.|+|++..+++ ++.|+
T Consensus 229 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d~ 306 (466)
T COG2319 229 STGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS-GSSDG 306 (466)
T ss_pred CCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE-eeCCC
Confidence 9888887 688888876 44899998889999999999999999766434555788899999999998775664 88889
Q ss_pred cEEEEECCCCeEEEEEe--cCCCcEEEEEEeCC
Q 005473 664 EIRYWSINNGSCAGVFK--NFFESFVSVRVVQP 694 (695)
Q Consensus 664 ~IriWDl~tg~~v~~~~--~h~~~VtsVaf~sP 694 (695)
.+++||+.+........ .|...|..+.| .|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 338 (466)
T COG2319 307 TVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SP 338 (466)
T ss_pred cEEEEEcCCCceEEEeeecccCCceEEEEE-CC
Confidence 99999999887777766 88888888887 54
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=3.5e-13 Score=156.84 Aligned_cols=189 Identities=17% Similarity=0.234 Sum_probs=143.6
Q ss_pred CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 005473 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (695)
Q Consensus 480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~ 559 (695)
..-..+.|.+.+.+ ...+++.|..||+|.+|+...- .++.....+.+...|++.|.
T Consensus 65 ~rF~kL~W~~~g~~-----------~~GlIaGG~edG~I~ly~p~~~-------------~~~~~~~~la~~~~h~G~V~ 120 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSH-----------SHGLIAGGLEDGNIVLYDPASI-------------IANASEEVLATKSKHTGPVL 120 (1049)
T ss_pred ccceeeeecccCCC-----------ccceeeccccCCceEEecchhh-------------ccCcchHHHhhhcccCCcee
Confidence 45567778776641 1157899999999999965321 12223345667788999999
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEec--ccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473 560 SCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRT 635 (695)
Q Consensus 560 ~v~fspdg~-~LaSgs~Dg~V~IWDl~t~~~~~~l~--~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~~~l~~ 635 (695)
.+.|++... +||+|+.||.|+|||+...+.-.++. ...+.|.+++|+.. ...|++++.+|++-|||++..+. +-.
T Consensus 121 gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-ii~ 199 (1049)
T KOG0307|consen 121 GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-IIK 199 (1049)
T ss_pred eeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-ccc
Confidence 999999765 99999999999999998754433332 23578999999874 55789999999999999998654 555
Q ss_pred EecCCC--CeEEEEEecCCCeEEEEEeCC---CcEEEEECCC-CeEEEEEecCCCcEEEEEEeCC
Q 005473 636 FTGHST--TVMSLDFHPSKEDLLCSCDNN---SEIRYWSINN-GSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 636 ~~gh~~--~V~sl~fspdg~~llaSgs~D---g~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sP 694 (695)
+..|.+ .+..|.|||++..-+++++.| -.|.+||+|. ..+++++.+|..+|.+|.| .|
T Consensus 200 ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsW-c~ 263 (1049)
T KOG0307|consen 200 LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSW-CP 263 (1049)
T ss_pred cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeecc-CC
Confidence 554543 478899999987666666544 4799999986 4688999999999999999 65
No 158
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.42 E-value=9.8e-13 Score=142.53 Aligned_cols=137 Identities=17% Similarity=0.228 Sum_probs=111.9
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCC--------------C--------------eEEEEecccCCCeEEEEE
Q 005473 555 TSKVESCHFSPDGK-LLATGGHDKKAVLWCTES--------------F--------------TVKSTLEEHTQWITDVRF 605 (695)
Q Consensus 555 ~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t--------------~--------------~~~~~l~~H~~~V~~v~~ 605 (695)
+..|+|+.|-|.+. .++.+-.+|.+++||..- + .++..+.--.+.|..++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 36799999988554 666677899999997631 0 111112122457899999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCc
Q 005473 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFES 685 (695)
Q Consensus 606 spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~ 685 (695)
+|||.+||+.+.||.+||||..+.+. +..++..-+...||+|+|||+ +|++|++|-.|.||.+..++.|..-.+|..+
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eL-lg~mkSYFGGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~erRVVARGqGHkSW 376 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQEL-LGVMKSYFGGLLCVCWSPDGK-YIVTGGEDDLVTVWSFEERRVVARGQGHKSW 376 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHH-HHHHHhhccceEEEEEcCCcc-EEEecCCcceEEEEEeccceEEEeccccccc
Confidence 99999999999999999999998553 555665667899999999999 6779999999999999999999999999999
Q ss_pred EEEEEEeCC
Q 005473 686 FVSVRVVQP 694 (695)
Q Consensus 686 VtsVaf~sP 694 (695)
|+.|+| .|
T Consensus 377 Vs~VaF-Dp 384 (636)
T KOG2394|consen 377 VSVVAF-DP 384 (636)
T ss_pred eeeEee-cc
Confidence 999999 76
No 159
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.3e-11 Score=126.53 Aligned_cols=175 Identities=17% Similarity=0.272 Sum_probs=132.4
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWC 583 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd--g~~LaSgs~Dg~V~IWD 583 (695)
...+|++|.|+++++|.-... -....+..+....++....+.|++|.|.|. |-.||+++.||+||||+
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~----------~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYE 142 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEK----------SEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYE 142 (361)
T ss_pred cceEEEEecCCceeeeeeccc----------ccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEe
Confidence 478999999999999943211 012234567778888999999999999995 66899999999999998
Q ss_pred CCCC------eEEEEec-------ccCCCeEEEEEcCC---CCEEEEEeCC-----CeEEEEECCCCC---eeEEEEecC
Q 005473 584 TESF------TVKSTLE-------EHTQWITDVRFSPS---LSRLATSSAD-----RTVRVWDTENPD---YSLRTFTGH 639 (695)
Q Consensus 584 l~t~------~~~~~l~-------~H~~~V~~v~~spd---g~~LaTgs~D-----gtIrvWDl~t~~---~~l~~~~gh 639 (695)
...- .+...+. .+.....||.|+|. ..+||.|+.+ +.++||...... ..+.++.+|
T Consensus 143 A~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~ 222 (361)
T KOG2445|consen 143 APDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH 222 (361)
T ss_pred cCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC
Confidence 7432 1222222 46678899999984 4578888765 478899876544 235677899
Q ss_pred CCCeEEEEEecCC---CeEEEEEeCCCcEEEEECCC--------------------CeEEEEEecCCCcEEEEEE
Q 005473 640 STTVMSLDFHPSK---EDLLCSCDNNSEIRYWSINN--------------------GSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 640 ~~~V~sl~fspdg---~~llaSgs~Dg~IriWDl~t--------------------g~~v~~~~~h~~~VtsVaf 691 (695)
...|+.|+|.|+- -++||+++.|| |+||.++. -+.+..+..|.+.|..|.|
T Consensus 223 ~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w 296 (361)
T KOG2445|consen 223 TDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW 296 (361)
T ss_pred CCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence 9999999999973 24789999999 99999973 1345667799999999998
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.42 E-value=1.9e-11 Score=129.06 Aligned_cols=145 Identities=34% Similarity=0.553 Sum_probs=123.9
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCC-EEEEEeCCCeEEE
Q 005473 546 TEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRV 623 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~-Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~-~LaTgs~DgtIrv 623 (695)
.....+..|...|.+++|+++++++++++. |+.+++|++..+..+..+.+|...|.+++|+|++. .+++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 456777899999999999999999999886 99999999999889999999999999999999987 5555589999999
Q ss_pred EECCCCCeeEE-EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE-EEEEecCCCcEEEEEEeCC
Q 005473 624 WDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 624 WDl~t~~~~l~-~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~-v~~~~~h~~~VtsVaf~sP 694 (695)
||...+.. +. .+.+|...+ ...|+|++. ++++++.|+.+++||++.... +..+.+|...|.++.| +|
T Consensus 226 wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~ 294 (466)
T COG2319 226 WDLSTGKL-LRSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF-SP 294 (466)
T ss_pred EECCCCcE-EeeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEE-CC
Confidence 99986554 55 688888876 448999984 666999999999999987654 5555788999999999 87
No 161
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=3.7e-13 Score=145.80 Aligned_cols=125 Identities=21% Similarity=0.421 Sum_probs=112.8
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cccCCCeEEEEEcC--CCCEEEEEeCCCeEEEE
Q 005473 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVRVW 624 (695)
Q Consensus 548 v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l-~~H~~~V~~v~~sp--dg~~LaTgs~DgtIrvW 624 (695)
...+.||++-|+|+.|+.+|.+|++|++|-.+.|||.-..++++.+ .+|...|.++.|-| +.++++||..|+.|+||
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3567899999999999999999999999999999999888888777 78999999999999 46788999999999999
Q ss_pred ECCC---------CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473 625 DTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 625 Dl~t---------~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t 672 (695)
|+.. .....+.+.+|...|..++-.|++++.|.++++||+||-+|++.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 9985 23345678899999999999999999999999999999999986
No 162
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.42 E-value=1.1e-12 Score=138.29 Aligned_cols=138 Identities=25% Similarity=0.412 Sum_probs=119.2
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 005473 555 TSKVESCHFSPDGK-LLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (695)
Q Consensus 555 ~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~---------~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvW 624 (695)
..+|..+.|.++.. .|+||+.|..|+||-+... +....+..|...|++|+|+|+|.+|++|+++|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45699999988776 9999999999999977532 2345668899999999999999999999999999999
Q ss_pred ECC--------C-----C--CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEE
Q 005473 625 DTE--------N-----P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSV 689 (695)
Q Consensus 625 Dl~--------t-----~--~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsV 689 (695)
-.. + . ....+.+.+|...|..++|+|++. ++++++.|..+++||+..|..+..+..|..-|..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 765 2 1 123467788999999999999987 67799999999999999999999999999999999
Q ss_pred EEeCC
Q 005473 690 RVVQP 694 (695)
Q Consensus 690 af~sP 694 (695)
+| .|
T Consensus 172 aw-Dp 175 (434)
T KOG1009|consen 172 AW-DP 175 (434)
T ss_pred ec-ch
Confidence 99 77
No 163
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.41 E-value=2e-12 Score=143.59 Aligned_cols=186 Identities=20% Similarity=0.286 Sum_probs=139.9
Q ss_pred cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCC-----cEEEEeCCCCCCCCCccccccccCCCceeeeE
Q 005473 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDD-----NVESFLSPDDADPRDRVGRSAEVGKGFTFTEF 548 (695)
Q Consensus 474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~-----~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v 548 (695)
-.+.+..++.++..++++ +++++++... .|++|. ...+..+
T Consensus 520 KLYGHGyEv~~l~~s~~g---------------nliASaCKS~~~ehAvI~lw~-------------------t~~W~~~ 565 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTG---------------NLIASACKSSLKEHAVIRLWN-------------------TANWLQV 565 (764)
T ss_pred HhccCceeEEEEEecCCC---------------CEEeehhhhCCccceEEEEEe-------------------ccchhhh
Confidence 345677788888888777 6677666433 344552 2244566
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 005473 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (695)
Q Consensus 549 ~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~----~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvW 624 (695)
..+.+|.-.|+.++|||||++|++++.|.++.+|...... ....++.|+..|.++.|+|++.+|+|+|+|++|+||
T Consensus 566 ~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 566 QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVW 645 (764)
T ss_pred heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEE
Confidence 7889999999999999999999999999999999864321 123367899999999999999999999999999999
Q ss_pred ECCCC--CeeEE-EEecCCCCeEEEEEecC----CCeEEEEEeCCCcEEEEECC------C-Ce-----EEEEEecCCCc
Q 005473 625 DTENP--DYSLR-TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSIN------N-GS-----CAGVFKNFFES 685 (695)
Q Consensus 625 Dl~t~--~~~l~-~~~gh~~~V~sl~fspd----g~~llaSgs~Dg~IriWDl~------t-g~-----~v~~~~~h~~~ 685 (695)
..... +...+ ....+...|+.++|.|- ...+++.|-..|.|.+|... + +. ......+|.+.
T Consensus 646 ~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a 725 (764)
T KOG1063|consen 646 EEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSA 725 (764)
T ss_pred eccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHh
Confidence 98765 32122 34457889999998763 33488899999999999965 1 11 11223377888
Q ss_pred EEEEEEeCC
Q 005473 686 FVSVRVVQP 694 (695)
Q Consensus 686 VtsVaf~sP 694 (695)
|+.++| .|
T Consensus 726 V~rl~w-~p 733 (764)
T KOG1063|consen 726 VNRLLW-RP 733 (764)
T ss_pred hheeEe-cc
Confidence 999998 76
No 164
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=2.5e-12 Score=133.17 Aligned_cols=166 Identities=16% Similarity=0.205 Sum_probs=126.4
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCT 584 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp--dg~~LaSgs~Dg~V~IWDl 584 (695)
..++++-..+.|++|+...+ ..+..+++|...++.+.|.. ....+.+|+.||+|++||+
T Consensus 41 ~~vav~lSngsv~lyd~~tg-------------------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG-------------------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred eeEEEEecCCeEEEEeccch-------------------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 56788888899999955332 23455677778888899976 4678999999999999999
Q ss_pred CCCeEE--EEecccC-CCeEEEEEcCCCCEEEEEe----CCCeEEEEECCCCCeeEE-EEecCCCCeEEEEEecCCCeEE
Q 005473 585 ESFTVK--STLEEHT-QWITDVRFSPSLSRLATSS----ADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLL 656 (695)
Q Consensus 585 ~t~~~~--~~l~~H~-~~V~~v~~spdg~~LaTgs----~DgtIrvWDl~t~~~~l~-~~~gh~~~V~sl~fspdg~~ll 656 (695)
+..... ..+..|. .+..|++..-.++.+++|. .|-.|.+||+|.....++ ....|...|++|.|||..+.+|
T Consensus 102 Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlL 181 (376)
T KOG1188|consen 102 RSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLL 181 (376)
T ss_pred ecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeE
Confidence 876544 3445555 4566777766677888875 377899999998776444 4567999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCe----EEEEEecCCCcEEEEEEe
Q 005473 657 CSCDNNSEIRYWSINNGS----CAGVFKNFFESFVSVRVV 692 (695)
Q Consensus 657 aSgs~Dg~IriWDl~tg~----~v~~~~~h~~~VtsVaf~ 692 (695)
++|+.||.|.+||++... .+.++ .|...|.++.|+
T Consensus 182 lSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~ 220 (376)
T KOG1188|consen 182 LSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWL 220 (376)
T ss_pred EeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeee
Confidence 999999999999997542 22333 455667777773
No 165
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=2e-11 Score=121.57 Aligned_cols=172 Identities=17% Similarity=0.227 Sum_probs=119.8
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
+++.+|+ ||.|+-|........ ....+.|+..... ..-...--.|+++...|..+-|+.++.|+.++-||+++
T Consensus 73 ~~Lls~g-dG~V~gw~W~E~~es-~~~K~lwe~~~P~-----~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~ 145 (325)
T KOG0649|consen 73 DFLLSGG-DGLVYGWEWNEEEES-LATKRLWEVKIPM-----QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED 145 (325)
T ss_pred hheeecc-CceEEEeeehhhhhh-ccchhhhhhcCcc-----ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC
Confidence 6777775 599999977544321 1222333222111 00001112488999998877777777899999999999
Q ss_pred CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec---------C-CCCeEEEEEecCCCeEE
Q 005473 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---------H-STTVMSLDFHPSKEDLL 656 (695)
Q Consensus 587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g---------h-~~~V~sl~fspdg~~ll 656 (695)
++..+++++|++.|.++.-......+++|+.||++||||+++.+. +.++.. | ..+|.+++-+.| +++
T Consensus 146 G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~lRp~~g~wigala~~ed--Wlv 222 (325)
T KOG0649|consen 146 GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLLRPDWGKWIGALAVNED--WLV 222 (325)
T ss_pred CEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce-eEEeccccChhhcCcccCceeEEEeccCc--eEE
Confidence 999999999999999999877678999999999999999999774 555432 2 245777776544 444
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473 657 CSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 657 aSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf 691 (695)
+|+ ...+.+|.++..+++.+|. ...+|..+.|
T Consensus 223 -CGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F 254 (325)
T KOG0649|consen 223 -CGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDF 254 (325)
T ss_pred -ecC-CCceeEEeccCCCceEEEe-cccceeEeee
Confidence 443 5689999999887776664 2233455555
No 166
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=4e-11 Score=120.03 Aligned_cols=119 Identities=18% Similarity=0.297 Sum_probs=92.5
Q ss_pred CCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCC
Q 005473 555 TSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENP 629 (695)
Q Consensus 555 ~~~V~~v~fspdg~~LaSg--s~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D---gtIrvWDl~t~ 629 (695)
.++|.+++|+|+|+.||+. ..++.|.|||++ ++.+..+. ...+..|.|+|+|++|++++.+ |.|.+||+++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 4569999999999986554 457899999997 56666664 5678899999999999998754 66999999964
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCeEEEEEeC-----CCcEEEEECCCCeEEEEEe
Q 005473 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 630 ~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~-----Dg~IriWDl~tg~~v~~~~ 680 (695)
+ ++..+. | ..++.++|+|||++++++.+. |..++||++. |+.+....
T Consensus 136 ~-~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 136 K-KISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred E-Eeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 4 355544 3 357899999999977766553 8999999985 77665543
No 167
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.37 E-value=2.3e-12 Score=139.39 Aligned_cols=163 Identities=18% Similarity=0.243 Sum_probs=127.1
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
..++.++.||.+.+..-. + +....+.+|.+.|.|-.|+|||.-|+++++||.|+||.- +
T Consensus 76 d~~~i~s~DGkf~il~k~-----------------~---rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-s 134 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-----------------A---RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-S 134 (737)
T ss_pred ceEEEEcCCceEEEeccc-----------------c---hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-c
Confidence 445566677877776211 1 223446789999999999999999999999999999984 3
Q ss_pred CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 005473 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (695)
Q Consensus 587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir 666 (695)
|-...++.....+|+|++|.|+...++.+. .+.+.|=-+..... +-.++.|.+-|.+++|++..+ ++++|++|-..+
T Consensus 135 GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfK 211 (737)
T KOG1524|consen 135 GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFK 211 (737)
T ss_pred chHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccc-eeEEeccCcEEEEeecCcccc-ceeecCCceeEE
Confidence 444445555678999999999866655543 34566656654333 566788999999999999976 888999999999
Q ss_pred EEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 667 YWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 667 iWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
|||- -|..+.....|..+|++|+| .|+
T Consensus 212 vWD~-~G~~Lf~S~~~ey~ITSva~-npd 238 (737)
T KOG1524|consen 212 IWDA-QGANLFTSAAEEYAITSVAF-NPE 238 (737)
T ss_pred eecc-cCcccccCChhccceeeeee-ccc
Confidence 9995 48889999999999999999 986
No 168
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.37 E-value=2.6e-11 Score=125.18 Aligned_cols=118 Identities=24% Similarity=0.455 Sum_probs=103.9
Q ss_pred CCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 005473 553 ASTSKVESCHFSPDG----KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE 627 (695)
Q Consensus 553 ~H~~~V~~v~fspdg----~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~ 627 (695)
.|....+.|+|+-|- -++|.|+.-|.|+|.|+.++++...+.+|...|..|.++|+ ..+|+++|.|.+||+|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 466678889997642 37899999999999999999999999999999999999996 4688999999999999999
Q ss_pred CCCeeEEEE---ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473 628 NPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 628 t~~~~l~~~---~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t 672 (695)
+.. |+..| .||.+.|.+++|+++|. .|++|+.|..|++|++..
T Consensus 167 ~~~-Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 167 TDV-CVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNV 212 (385)
T ss_pred CCe-EEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecCh
Confidence 854 67665 47999999999999998 677999999999999983
No 169
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.37 E-value=2.9e-12 Score=141.20 Aligned_cols=159 Identities=17% Similarity=0.273 Sum_probs=117.1
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (695)
Q Consensus 504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD 583 (695)
..++.++.+-.||.|.+++..... .+ .....++....|...|..+.|.|....|++++.|.++++||
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~------fr-------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIV------FR-------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWD 128 (720)
T ss_pred CccceEEEecCCCceeeecchhhh------cc-------hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeee
Confidence 345889999999999999653221 11 11122455678999999999999667899999999999999
Q ss_pred CCCCeEEEE--ecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe------e--------------------EE
Q 005473 584 TESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY------S--------------------LR 634 (695)
Q Consensus 584 l~t~~~~~~--l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~~------~--------------------l~ 634 (695)
+++.+++.. +.||.+.|.+++|+|. ...|++|+.||.|.|||++.... + +.
T Consensus 129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred eccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 999998877 8999999999999995 56789999999999999974331 0 11
Q ss_pred EEecCCCCeEE---EEEecCCCeEEEEEeC-CCcEEEEECCCCeEE
Q 005473 635 TFTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGSCA 676 (695)
Q Consensus 635 ~~~gh~~~V~s---l~fspdg~~llaSgs~-Dg~IriWDl~tg~~v 676 (695)
....|...|.+ +.+.-|.. .|++++. |+.|+|||+++..+.
T Consensus 209 k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 209 KWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred ccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccc
Confidence 12233333444 44445555 4556665 999999999975443
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.35 E-value=5.3e-12 Score=130.14 Aligned_cols=143 Identities=17% Similarity=0.293 Sum_probs=113.8
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCT 584 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg-~~LaSgs~Dg~V~IWDl 584 (695)
+.|++.|+.-|.|++.+.... .....+.+|...|+.+.|.|+. .+|++|+.|..||+||+
T Consensus 105 ~p~la~~G~~GvIrVid~~~~-------------------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSG-------------------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred CeeEEeecceeEEEEEecchh-------------------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 456666666677776644322 4557788999999999999975 59999999999999999
Q ss_pred CCCeEEEEe---cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--------------------------eE-E
Q 005473 585 ESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--------------------------SL-R 634 (695)
Q Consensus 585 ~t~~~~~~l---~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~--------------------------~l-~ 634 (695)
.+..|+..+ ++|.+.|.++.|++++.+|++++.|..|++|++..+.. +. .
T Consensus 166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 999999887 68999999999999999999999999999999984221 00 1
Q ss_pred EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (695)
Q Consensus 635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl 670 (695)
+-.-|...|-|+.|-- + ++++-+.++.|.+|..
T Consensus 246 t~diHrnyVDCvrw~g--d-~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWFG--D-FILSKSCENAIVCWKP 278 (385)
T ss_pred ccccccchHHHHHHHh--h-heeecccCceEEEEec
Confidence 2234666677777763 3 6668888999999987
No 171
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.35 E-value=6.5e-12 Score=134.17 Aligned_cols=147 Identities=22% Similarity=0.217 Sum_probs=113.2
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
..+.+.|.||+|++-++... .+.++..+......+..+.|+.+...++.+..=|...+||.++
T Consensus 248 s~i~ssSyDGtiR~~D~~~~-----------------i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~ 310 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGN-----------------ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT 310 (498)
T ss_pred hheeeeccCceeeeeeecch-----------------hhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeec
Confidence 56788899999999866433 1223333333344578899988888787887777999999998
Q ss_pred CeE-EEEecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCC--e-eEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 005473 587 FTV-KSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD--Y-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (695)
Q Consensus 587 ~~~-~~~l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~--~-~l~~~~gh~~~V~sl~fspdg~~llaSgs~ 661 (695)
.+. ...++-|...|+.|+++|- ..+|+|+|.|++++|||++.-. . ++-....|...|.++.|+|++..|+ +.+.
T Consensus 311 ~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~-TT~~ 389 (498)
T KOG4328|consen 311 DGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLL-TTCQ 389 (498)
T ss_pred CCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceE-eecc
Confidence 665 5667789899999999995 5578999999999999998532 2 2334456999999999999988755 6667
Q ss_pred CCcEEEEECC
Q 005473 662 NSEIRYWSIN 671 (695)
Q Consensus 662 Dg~IriWDl~ 671 (695)
|..|||||..
T Consensus 390 D~~IRv~dss 399 (498)
T KOG4328|consen 390 DNEIRVFDSS 399 (498)
T ss_pred CCceEEeecc
Confidence 9999999983
No 172
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=1.3e-11 Score=134.91 Aligned_cols=166 Identities=20% Similarity=0.296 Sum_probs=132.8
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
..+.+|+.|++|+.|..+...++.+.+- ......++.||++.|..+++|.....|++|+.||+|++|+...
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~d---------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYD---------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccC---------cchhccceeccccceeeeeecccccceeeecCCceEEeeccCC
Confidence 7889999999999998875444332221 1123356789999999999999999999999999999997643
Q ss_pred CeEEEEec-----------------------------------------------c-----cCCCeEEEEEcCCCCEEEE
Q 005473 587 FTVKSTLE-----------------------------------------------E-----HTQWITDVRFSPSLSRLAT 614 (695)
Q Consensus 587 ~~~~~~l~-----------------------------------------------~-----H~~~V~~v~~spdg~~LaT 614 (695)
..+ +++. . ....+.-|.++|...+.++
T Consensus 428 ~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~ 506 (577)
T KOG0642|consen 428 ESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFT 506 (577)
T ss_pred cCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEe
Confidence 222 1110 0 0123567788899999999
Q ss_pred EeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCC
Q 005473 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFE 684 (695)
Q Consensus 615 gs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~ 684 (695)
+..|+.|+++|..+++. +.....|...|+++++.|+|. +|++|+.|+.|++|.+....|+..+..|..
T Consensus 507 ~hed~~Ir~~dn~~~~~-l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 507 AHEDRSIRFFDNKTGKI-LHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred cccCCceeccccccccc-chheeeccceecceeecCCCc-eEEeecCCceeehhhccchheeeccccccc
Confidence 99999999999999775 888899999999999999998 556999999999999999999998888863
No 173
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.34 E-value=1.1e-11 Score=127.62 Aligned_cols=184 Identities=19% Similarity=0.209 Sum_probs=141.5
Q ss_pred CCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 005473 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (695)
Q Consensus 479 s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V 558 (695)
-.++++..|+.|.. .++.+.....|.+|.... ...+...+++..|...|
T Consensus 10 ~~pitchAwn~drt---------------~iAv~~~~~evhiy~~~~----------------~~~w~~~htls~Hd~~v 58 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT---------------QIAVSPNNHEVHIYSMLG----------------ADLWEPAHTLSEHDKIV 58 (361)
T ss_pred cCceeeeeecCCCc---------------eEEeccCCceEEEEEecC----------------CCCceeceehhhhCcce
Confidence 35788888888874 456666667777773321 22357789999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEC-CCC--eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC---ee
Q 005473 559 ESCHFSPDGKLLATGGHDKKAVLWCT-ESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YS 632 (695)
Q Consensus 559 ~~v~fspdg~~LaSgs~Dg~V~IWDl-~t~--~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~---~~ 632 (695)
++|+|+|..+.|++|+.|...+||.. ..+ ++...+..|...+++|.|+|.++.|++||..+.|.||-++... .+
T Consensus 59 tgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs 138 (361)
T KOG1523|consen 59 TGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS 138 (361)
T ss_pred eEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh
Confidence 99999999999999999999999988 333 4555667789999999999999999999999999999876432 11
Q ss_pred EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC------------------CCeEEEEEecCCCcEEEEEEeCC
Q 005473 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------------------NGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~------------------tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
...-..+.+.|++++|||++ .++++|+.|+.+|||..- -|+.+..+....+.|..+.| +|
T Consensus 139 KhikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f-s~ 216 (361)
T KOG1523|consen 139 KHIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF-SP 216 (361)
T ss_pred hhhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe-CC
Confidence 22334567889999999995 489999999999999741 12344555455677888888 76
Q ss_pred C
Q 005473 695 R 695 (695)
Q Consensus 695 d 695 (695)
+
T Consensus 217 s 217 (361)
T KOG1523|consen 217 S 217 (361)
T ss_pred C
Confidence 4
No 174
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=1.6e-11 Score=126.03 Aligned_cols=183 Identities=17% Similarity=0.172 Sum_probs=132.2
Q ss_pred ccccCCCCCceEEEEecCCCccccccCCc-------cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCcee
Q 005473 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQ-------LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (695)
Q Consensus 473 ~l~~s~s~~~s~l~~~~dg~~~la~s~~~-------l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~ 545 (695)
.+..+.+.+..++.|+..|...-.+..+. +.+..+|++++++...|++|......++ .-...
T Consensus 200 k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG-----------~fqev 268 (420)
T KOG2096|consen 200 KYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG-----------TFQEV 268 (420)
T ss_pred eEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc-----------chhhh
Confidence 34556677888888988765332233332 4556699999999999999965433322 11233
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------eEEEEe----cccCCCeEEEEEcCCCCEEEE
Q 005473 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-------TVKSTL----EEHTQWITDVRFSPSLSRLAT 614 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~-------~~~~~l----~~H~~~V~~v~~spdg~~LaT 614 (695)
..+..++||...|..++|+++.+.+++.+.||+++|||++-. +.+++. ..-.+.-..+.++|+|..|+.
T Consensus 269 ~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~ 348 (420)
T KOG2096|consen 269 KRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV 348 (420)
T ss_pred hhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe
Confidence 455678999999999999999999999999999999998521 111111 122344458999999988877
Q ss_pred EeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 005473 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (695)
Q Consensus 615 gs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWD 669 (695)
+. ..++++|..++++..-..-..|...|.+++|+++|+ ++++|+ |..++++-
T Consensus 349 s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~-~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 349 SF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGK-YIATCG-DRYVRVIR 400 (420)
T ss_pred ec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCc-EEeeec-ceeeeeec
Confidence 54 567999999987652233456889999999999998 566887 78888876
No 175
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.32 E-value=3.3e-13 Score=151.88 Aligned_cols=120 Identities=23% Similarity=0.464 Sum_probs=111.8
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD 625 (695)
+.++.+.+|...|+|+.|...|++|++|++|..|+||.+++..|+..+.||.+.|++++.+.+..+++++|.|..|+||.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34566789999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (695)
Q Consensus 626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~ 671 (695)
+.++. ++..+.||++.|++++|+|.- +.+.||+++|||.+
T Consensus 261 l~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 261 LPDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR 300 (1113)
T ss_pred cCCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEecccc
Confidence 99865 589999999999999999863 67789999999988
No 176
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=3.1e-11 Score=123.83 Aligned_cols=130 Identities=18% Similarity=0.278 Sum_probs=107.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (695)
Q Consensus 555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~ 634 (695)
.+.|.+|.|+|.+..|++++.||++++||+........+. |..++.+++|.+ ...+++|+.||.|+++|+.++.. .
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~--~ 88 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE--D 88 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc--e
Confidence 4569999999999999999999999999998875555554 899999999987 46899999999999999998664 6
Q ss_pred EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEE
Q 005473 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVR 690 (695)
Q Consensus 635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVa 690 (695)
.+..|...|.||.+++... .+++|+.|++|++||.+...++.++.... .|.++.
T Consensus 89 ~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~ 142 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMD 142 (323)
T ss_pred eeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCc-eEEEEe
Confidence 6777999999999998765 56699999999999999765655554332 555554
No 177
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=99.29 E-value=2.1e-12 Score=130.09 Aligned_cols=77 Identities=32% Similarity=0.735 Sum_probs=62.6
Q ss_pred CcchHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHhhhhhcc----cccccchhhhh
Q 005473 4 NNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN----EKHSESAASYI 79 (695)
Q Consensus 4 ~~~~~~~~L~~yIydyl~k~~~~~tA~af~~e~~~~~~~~~id~~~~fL~EWW~iFwDif~A~t~----~~~s~~a~~yi 79 (695)
++-.|+++|..||||||++-+..++|+.|+.|..+..+ +.+-.+-+||.+||++|||+|+|... ..++..++.+.
T Consensus 12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh 90 (354)
T KOG4594|consen 12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH 90 (354)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence 56679999999999999999999999999999886654 44556679999999999999999443 35555565554
Q ss_pred HH
Q 005473 80 ES 81 (695)
Q Consensus 80 q~ 81 (695)
+.
T Consensus 91 dy 92 (354)
T KOG4594|consen 91 DY 92 (354)
T ss_pred hh
Confidence 43
No 178
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.28 E-value=2.4e-11 Score=133.40 Aligned_cols=162 Identities=18% Similarity=0.231 Sum_probs=121.9
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~ 585 (695)
+.++++||.|..|++|..+.+.... .. .+...+-+..-.|.|+.|+|...-|+..+..|+|+|||+.
T Consensus 92 D~LLAT~S~D~~VKiW~lp~g~~q~------------LS-ape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~s 158 (1012)
T KOG1445|consen 92 DELLATCSRDEPVKIWKLPRGHSQK------------LS-APEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDIS 158 (1012)
T ss_pred hhhhhcccCCCeeEEEecCCCcccc------------cC-CcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcc
Confidence 4789999999999999776442110 00 0111222334468999999976645555557899999999
Q ss_pred CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCC-eEEEEEecCCCeEEEEEeC---
Q 005473 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHPSKEDLLCSCDN--- 661 (695)
Q Consensus 586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~-V~sl~fspdg~~llaSgs~--- 661 (695)
+.+.+..+.+|...|-+..|+.||.+|++++.|+.|+|||.+....++.+..+|.+. -..|.|.-+-..|+.+|-.
T Consensus 159 tqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R 238 (1012)
T KOG1445|consen 159 TQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKR 238 (1012)
T ss_pred cCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccchhh
Confidence 999999999999999999999999999999999999999999988888888999753 2456776555556655542
Q ss_pred CCcEEEEECCC-CeEEEEEe
Q 005473 662 NSEIRYWSINN-GSCAGVFK 680 (695)
Q Consensus 662 Dg~IriWDl~t-g~~v~~~~ 680 (695)
-..|++||.+. +.++.++.
T Consensus 239 ~reV~~~Dtr~f~~p~~tle 258 (1012)
T KOG1445|consen 239 IREVRAYDTRKFGAPVHTLE 258 (1012)
T ss_pred heeeeeeeccccCCcceeEE
Confidence 35799999986 44555444
No 179
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.28 E-value=2.8e-11 Score=133.63 Aligned_cols=187 Identities=14% Similarity=0.178 Sum_probs=126.5
Q ss_pred cEEEEeeCCCcEEEEeCCCCC-CCCCccc-cccccCCC------ceeeeEEEecCCCCCeEE---EEEcCCCCEEEEEeC
Q 005473 507 RFVDDGSLDDNVESFLSPDDA-DPRDRVG-RSAEVGKG------FTFTEFQLIPASTSKVES---CHFSPDGKLLATGGH 575 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~-~~~~~~~-~~~d~~~~------~~~~~v~~l~~H~~~V~~---v~fspdg~~LaSgs~ 575 (695)
..+++|+.|+.|.+|+..-.. +....+. ++....++ ...+.+...++|...|.. +.+..|...||+++.
T Consensus 158 ~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga 237 (720)
T KOG0321|consen 158 AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA 237 (720)
T ss_pred cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccC
Confidence 678999999999999875432 1000000 11111111 111223334456666666 777789999999998
Q ss_pred -CCcEEEEECCCCeEEEE--------eccc---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eEEEEecCCCC
Q 005473 576 -DKKAVLWCTESFTVKST--------LEEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTT 642 (695)
Q Consensus 576 -Dg~V~IWDl~t~~~~~~--------l~~H---~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~-~l~~~~gh~~~ 642 (695)
|+.|+|||++...+... +..| ...++++.....|.+|+..|.|+.|++||+..-.. ++..+.++-..
T Consensus 238 ~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~ 317 (720)
T KOG0321|consen 238 ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNS 317 (720)
T ss_pred CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccc
Confidence 99999999986543222 2223 34577888888889998888999999999986442 34455554322
Q ss_pred e--EEEEEecCCCeEEEEEeCCCcEEEEECCCCe-EEEEEecCCCcEEEEEEeCCC
Q 005473 643 V--MSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 643 V--~sl~fspdg~~llaSgs~Dg~IriWDl~tg~-~v~~~~~h~~~VtsVaf~sPd 695 (695)
- ..-..+||+. .+++|+.|...++|.+.+.+ ....+.+|+-.|++|+| .|.
T Consensus 318 sf~vks~lSpd~~-~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w-~pS 371 (720)
T KOG0321|consen 318 SFYVKSELSPDDC-SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRW-LPS 371 (720)
T ss_pred eeeeeeecCCCCc-eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEee-ccc
Confidence 1 1224688887 56699999999999998754 56667799999999999 763
No 180
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=2.5e-10 Score=127.12 Aligned_cols=159 Identities=16% Similarity=0.258 Sum_probs=123.7
Q ss_pred CccccccccCCCceeeeEEEecCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCC
Q 005473 531 DRVGRSAEVGKGFTFTEFQLIPAS-TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609 (695)
Q Consensus 531 ~~~~~~~d~~~~~~~~~v~~l~~H-~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg 609 (695)
+...++|....++.... .+.++ ...|.+++|++ +..|++.+.+|+|.-||+.+++.+..+....+.|++++.+|.+
T Consensus 46 ~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~ 122 (691)
T KOG2048|consen 46 DGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN 122 (691)
T ss_pred CCcEEEEccCCCceeeE--EEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc
Confidence 34557777776654443 34444 45799999995 4457788899999999999999999999899999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeE-EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe--------
Q 005473 610 SRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------- 680 (695)
Q Consensus 610 ~~LaTgs~DgtIrvWDl~t~~~~l-~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-------- 680 (695)
..++.||+||.++.++...++... +.+..-++.|.+|+|+|++.. +++|+.||.|++||+.++..+..+.
T Consensus 123 ~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k 201 (691)
T KOG2048|consen 123 TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK 201 (691)
T ss_pred ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-EEecccCceEEEEEcCCCceEEEeeeccccccc
Confidence 999999999988888888765422 334445689999999999874 5599999999999999987776322
Q ss_pred cCCCcEEEEEEeC
Q 005473 681 NFFESFVSVRVVQ 693 (695)
Q Consensus 681 ~h~~~VtsVaf~s 693 (695)
.-..-|++|.|+.
T Consensus 202 ~~~~iVWSv~~Lr 214 (691)
T KOG2048|consen 202 REPTIVWSVLFLR 214 (691)
T ss_pred CCceEEEEEEEee
Confidence 1223567776643
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.26 E-value=9.3e-11 Score=133.12 Aligned_cols=193 Identities=17% Similarity=0.206 Sum_probs=140.4
Q ss_pred cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC
Q 005473 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (695)
Q Consensus 474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~ 553 (695)
..+.....+.++.|++... .+++.|+.+|.|.+|+.....+.. .. ..-.....
T Consensus 237 ~~~~~~s~v~~~~f~p~~p--------------~ll~gG~y~GqV~lWD~~~~~~~~---------~s----~ls~~~~s 289 (555)
T KOG1587|consen 237 LVLESPSEVTCLKFCPFDP--------------NLLAGGCYNGQVVLWDLRKGSDTP---------PS----GLSALEVS 289 (555)
T ss_pred EEEecCCceeEEEeccCCc--------------ceEEeeccCceEEEEEccCCCCCC---------Cc----cccccccc
Confidence 3444556777777777554 889999999999999876553211 00 11122346
Q ss_pred CCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCC---------------------------------------------
Q 005473 554 STSKVESCHFSPDG--KLLATGGHDKKAVLWCTES--------------------------------------------- 586 (695)
Q Consensus 554 H~~~V~~v~fspdg--~~LaSgs~Dg~V~IWDl~t--------------------------------------------- 586 (695)
|..+|+.+.|..+- .-|++++.||.|+.|+++.
T Consensus 290 h~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~ 369 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEE 369 (555)
T ss_pred CCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCC
Confidence 89999999996644 4499999999999998742
Q ss_pred CeE------------------EEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEE
Q 005473 587 FTV------------------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (695)
Q Consensus 587 ~~~------------------~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~f 648 (695)
|.. ...+..|.+.|+++.++|=+..++..+.|.+|+||.......++..+..+...|++++|
T Consensus 370 G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW 449 (555)
T KOG1587|consen 370 GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAW 449 (555)
T ss_pred cEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEE
Confidence 110 01122467889999999976666555559999999988445568888888888999999
Q ss_pred ecCCCeEEEEEeCCCcEEEEECCC--CeEEEEEecCCCcEEEEEEeCC
Q 005473 649 HPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 649 spdg~~llaSgs~Dg~IriWDl~t--g~~v~~~~~h~~~VtsVaf~sP 694 (695)
+|..+.+|+++..||.|.|||+.. ..++.+.+.+....+.+.| ++
T Consensus 450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~-s~ 496 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRW-SP 496 (555)
T ss_pred cCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeec-CC
Confidence 999999999999999999999964 4566666656555555655 54
No 182
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.25 E-value=1.9e-10 Score=130.45 Aligned_cols=165 Identities=14% Similarity=0.212 Sum_probs=141.6
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
+-++.|+.+|.+.+|++..+ +.++++.++.+.|++|.-+|--..+|.|..+|+|.|++++.
T Consensus 173 NKIvvGs~~G~lql~Nvrt~-------------------K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~ 233 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTG-------------------KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF 233 (910)
T ss_pred eeEEEeecCCcEEEEEeccC-------------------cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc
Confidence 56788999999999976544 57889999999999999999999999999999999999999
Q ss_pred CeEEEEecccCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 005473 587 FTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (695)
Q Consensus 587 ~~~~~~l~~H~~~V~~v~~spdg~~-LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~I 665 (695)
.+.+.+++...+.|+.++|..||.. +++|+..|.+.+||++..+..-.+...|.+.|..+.|.|..+ ++++.+.|..+
T Consensus 234 dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSl 312 (910)
T KOG1539|consen 234 DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSL 312 (910)
T ss_pred CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCce
Confidence 9999999855699999999999875 577777899999999987664456668999999999999876 77799999999
Q ss_pred EEEECCCC----eEEEEEecCCCcEEEEEE
Q 005473 666 RYWSINNG----SCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 666 riWDl~tg----~~v~~~~~h~~~VtsVaf 691 (695)
++|=.+++ +.++.-.||+.|..+|+|
T Consensus 313 k~~vfD~~dg~pR~LR~R~GHs~Pp~~irf 342 (910)
T KOG1539|consen 313 KVWVFDSGDGVPRLLRSRGGHSAPPSCIRF 342 (910)
T ss_pred eEEEeeCCCCcchheeeccCCCCCchheee
Confidence 98866643 456666699999999998
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=3.7e-11 Score=130.47 Aligned_cols=162 Identities=19% Similarity=0.264 Sum_probs=128.8
Q ss_pred cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEe-cCC
Q 005473 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PAS 554 (695)
Q Consensus 476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l-~~H 554 (695)
..+..-+.++.|..+| .|+++||.|-.+-+|+.. ..+.++.+ .+|
T Consensus 47 ~GH~GCVN~LeWn~dG---------------~lL~SGSDD~r~ivWd~~-------------------~~KllhsI~TgH 92 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADG---------------ELLASGSDDTRLIVWDPF-------------------EYKLLHSISTGH 92 (758)
T ss_pred ccccceecceeecCCC---------------CEEeecCCcceEEeecch-------------------hcceeeeeeccc
Confidence 3455677889999888 799999999999999542 22333333 589
Q ss_pred CCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCC----------CeEEEEecccCCCeEEEEEcCCC-CEEEEEeCCCeE
Q 005473 555 TSKVESCHFSP--DGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTV 621 (695)
Q Consensus 555 ~~~V~~v~fsp--dg~~LaSgs~Dg~V~IWDl~t----------~~~~~~l~~H~~~V~~v~~spdg-~~LaTgs~DgtI 621 (695)
+.-|.|+.|-| +.+.+++|..|+.|+|||+.. .+..+.+..|...|..|+..|++ ..+.+++.||+|
T Consensus 93 taNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGti 172 (758)
T KOG1310|consen 93 TANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTI 172 (758)
T ss_pred ccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcce
Confidence 99999999988 466899999999999999974 23345566799999999999987 678999999999
Q ss_pred EEEECCCCCeeEEEEecC---------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473 622 RVWDTENPDYSLRTFTGH---------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (695)
Q Consensus 622 rvWDl~t~~~~l~~~~gh---------~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~ 671 (695)
+-+|++.+..|-.....| --...|+.++|..+++|+.|+.|-..++||.+
T Consensus 173 rQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 173 RQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 999999865543222222 13467899999999999999999999999953
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.24 E-value=4.3e-11 Score=132.10 Aligned_cols=174 Identities=19% Similarity=0.296 Sum_probs=132.7
Q ss_pred CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (695)
Q Consensus 477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~ 556 (695)
.++..+..+.|.|||. .++.. .+..+.+|+..++ ..+.++++|++
T Consensus 10 ~~~hci~d~afkPDGs--------------qL~lA--Ag~rlliyD~ndG-------------------~llqtLKgHKD 54 (1081)
T KOG1538|consen 10 KAEHCINDIAFKPDGT--------------QLILA--AGSRLLVYDTSDG-------------------TLLQPLKGHKD 54 (1081)
T ss_pred ccccchheeEECCCCc--------------eEEEe--cCCEEEEEeCCCc-------------------ccccccccccc
Confidence 3455788899999996 44443 3467788876655 35678899999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l-~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~ 635 (695)
.|+||+|+.||+.+|||+.|+.|.||.-.- ...+ ..|++.|-|+.|+|-...|+|++-. ..-+|..+.... ..
T Consensus 55 tVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V--~K 128 (1081)
T KOG1538|consen 55 TVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV--SK 128 (1081)
T ss_pred eEEEEEEccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH--Hh
Confidence 999999999999999999999999998542 2223 3599999999999998899998754 467898875332 21
Q ss_pred EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe---cCCCcEEEEEEeCCC
Q 005473 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---NFFESFVSVRVVQPR 695 (695)
Q Consensus 636 ~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~---~h~~~VtsVaf~sPd 695 (695)
.. ....|.+++|..||. +++.|-.||+|.|-+-. |+.-..+. |..++|++|+| +|+
T Consensus 129 ~k-ss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~-~p~ 187 (1081)
T KOG1538|consen 129 HK-SSSRIICCSWTNDGQ-YLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICW-NPS 187 (1081)
T ss_pred hh-hheeEEEeeecCCCc-EEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEe-cCC
Confidence 11 235789999999998 67799999999999744 44443343 56789999999 884
No 185
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=4.1e-11 Score=131.40 Aligned_cols=140 Identities=16% Similarity=0.240 Sum_probs=121.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 005473 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (695)
Q Consensus 553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~ 632 (695)
-..+.|.++.|+|...+|++++. ..|+|||+...+.++.+......|..++.+|.|..|+.|+.|+.+.+||++-...+
T Consensus 564 kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP 642 (733)
T KOG0650|consen 564 KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP 642 (733)
T ss_pred hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch
Confidence 34556999999999999998884 67999999888888888777889999999999999999999999999999987778
Q ss_pred EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC------C---CeEEEEEecCCCc----EEEEEEeCCC
Q 005473 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------N---GSCAGVFKNFFES----FVSVRVVQPR 695 (695)
Q Consensus 633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~------t---g~~v~~~~~h~~~----VtsVaf~sPd 695 (695)
.+++..|...|++|+||+.-+ |||+|+.||+|.||.-+ . --++..+.+|.-. |..+.| ||.
T Consensus 643 yk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~w-HP~ 716 (733)
T KOG0650|consen 643 YKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIW-HPR 716 (733)
T ss_pred hHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecc-cCC
Confidence 899999999999999999877 89999999999999643 1 2456778888755 899999 995
No 186
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=5.6e-10 Score=119.64 Aligned_cols=137 Identities=19% Similarity=0.277 Sum_probs=110.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCe--EEEEEcCCCCEEEEEeCCCeEEEEECCC-----
Q 005473 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRTVRVWDTEN----- 628 (695)
Q Consensus 556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V--~~v~~spdg~~LaTgs~DgtIrvWDl~t----- 628 (695)
+.|..++|+.|++.|++++.+|.|++||++...+++.+.. .+.| +++|.++++.+||+|+..|.|-|||..+
T Consensus 345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST 423 (514)
T ss_pred cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccC
Confidence 4578899999999999999999999999999999988864 3333 4667778999999999999999999653
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCCCeEEEEEe---cCCCcEEEEEEeCCC
Q 005473 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFK---NFFESFVSVRVVQPR 695 (695)
Q Consensus 629 ~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs--~Dg~IriWDl~tg~~v~~~~---~h~~~VtsVaf~sPd 695 (695)
...+++++......|+++.|++|.. |+|-|+ .+..+|+-.+.+-..-..|. ..-+.|+||+| +|+
T Consensus 424 ~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aF-SP~ 493 (514)
T KOG2055|consen 424 NPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAF-SPN 493 (514)
T ss_pred CCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEe-cCC
Confidence 2235777777788999999999987 665555 56789999988766656565 33467899999 994
No 187
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.19 E-value=2.8e-10 Score=114.66 Aligned_cols=141 Identities=19% Similarity=0.261 Sum_probs=110.6
Q ss_pred CCCCCeEEEEEcCC-CC--EEEEEeCCCcEEEEECCCC----------eEEEEecccCCCeEEEEEcCCCCEEEEEeCCC
Q 005473 553 ASTSKVESCHFSPD-GK--LLATGGHDKKAVLWCTESF----------TVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (695)
Q Consensus 553 ~H~~~V~~v~fspd-g~--~LaSgs~Dg~V~IWDl~t~----------~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg 619 (695)
+..+.|.|..|..+ ++ +++.|-++|.|.+||+.++ +.+.....|..+|.++.|.+....=++|+.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d 227 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD 227 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence 45677888887543 33 4566667999999999987 33334457999999999988656668888888
Q ss_pred eEEEEECCCCC--eeEE-EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 620 TVRVWDTENPD--YSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 620 tIrvWDl~t~~--~~l~-~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
.+..|++.... ..+. +..-..-.|..+.+.||++ ++|+++.|+.||||..++..++.+++-|++.|.+|+| +|+
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAf-spd 304 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAF-SPD 304 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEe-CCC
Confidence 99999986532 2221 1121224588899999988 8999999999999999999999999999999999999 996
No 188
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.19 E-value=7.3e-10 Score=116.22 Aligned_cols=119 Identities=22% Similarity=0.324 Sum_probs=99.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCC
Q 005473 553 ASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-VRVWDTENP 629 (695)
Q Consensus 553 ~H~~~V~~v~fspdg~~LaSgs--~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dgt-IrvWDl~t~ 629 (695)
.+...+.++.+++.+.+||.-+ ..|.|.|||+.+.+.+..+..|++.|-|++|+++|.+|||+|+.|+ ||||++.++
T Consensus 127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 4455577777777888888643 3589999999999999999999999999999999999999999887 899999987
Q ss_pred CeeEEEEecCC--CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 005473 630 DYSLRTFTGHS--TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673 (695)
Q Consensus 630 ~~~l~~~~gh~--~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg 673 (695)
.. +..|+.-. ..|.+++|+|++. +|++.+..++|+||.+.+-
T Consensus 207 ~k-l~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 207 QK-LYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKV 250 (391)
T ss_pred cE-eeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEeccc
Confidence 75 66665332 3578999999998 6667777899999998753
No 189
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.18 E-value=9.1e-11 Score=118.13 Aligned_cols=153 Identities=19% Similarity=0.282 Sum_probs=118.8
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
-+++.|-.++.|.+|+...+ +.+..... .++.+..+..|..+|.++.|.+....=++|+.+..+..|.+..
T Consensus 166 ~lllaGyEsghvv~wd~S~~----~~~~~~~~-----~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTG----DKIIQLPQ-----SSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred EEEEEeccCCeEEEEEccCC----ceeecccc-----ccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 45667778999999988655 22222111 2234455678999999999988666667888888899998753
Q ss_pred C--eE--EEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473 587 F--TV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (695)
Q Consensus 587 ~--~~--~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D 662 (695)
. .+ ...++-..-.|..++..||++.+||++.|+.||||..++.. ++..+.-|.+.|.+++|+|+.+ ++|+++.|
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd~~-lmAaaskD 314 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDCE-LMAAASKD 314 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCCCc-hhhhccCC
Confidence 2 21 12222234568899999999999999999999999999976 5899999999999999999965 89999999
Q ss_pred CcEEEEEC
Q 005473 663 SEIRYWSI 670 (695)
Q Consensus 663 g~IriWDl 670 (695)
+.|.+|++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999986
No 190
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=1.9e-09 Score=112.70 Aligned_cols=168 Identities=15% Similarity=0.219 Sum_probs=118.0
Q ss_pred CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (695)
Q Consensus 478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~ 557 (695)
..+.++++.|.|-+. .-++.|+. .-|++|....... ..+..+.. +.-...+....+| .+
T Consensus 139 sQrnvtclawRPlsa--------------selavgCr-~gIciW~~s~tln-~~r~~~~~----s~~~~qvl~~pgh-~p 197 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSA--------------SELAVGCR-AGICIWSDSRTLN-ANRNIRMM----STHHLQVLQDPGH-NP 197 (445)
T ss_pred hhcceeEEEeccCCc--------------ceeeeeec-ceeEEEEcCcccc-cccccccc----cccchhheeCCCC-ce
Confidence 446888999998765 23344433 5678884422110 00111111 1111223344566 67
Q ss_pred eEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473 558 VESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~-Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~ 636 (695)
|+++.|++||..+++++. |..|.|||.+++.++....--.+.+.-+.|+||+.+|+.+..|+..+||.......+.+..
T Consensus 198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~ 277 (445)
T KOG2139|consen 198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI 277 (445)
T ss_pred eeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee
Confidence 999999999999999886 6889999999988776654446789999999999999999999999999766555545555
Q ss_pred ecCCCCeEEEEEecCCCeEEEEEeCCCcEEE
Q 005473 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (695)
Q Consensus 637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~Iri 667 (695)
.+ .+.|...+|+|+|..+|++++....|+-
T Consensus 278 lg-sgrvqtacWspcGsfLLf~~sgsp~lys 307 (445)
T KOG2139|consen 278 LG-SGRVQTACWSPCGSFLLFACSGSPRLYS 307 (445)
T ss_pred cc-CCceeeeeecCCCCEEEEEEcCCceEEE
Confidence 54 3589999999999999988876554443
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=5.1e-10 Score=125.41 Aligned_cols=137 Identities=10% Similarity=0.051 Sum_probs=98.6
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCC-eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473 550 LIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (695)
Q Consensus 550 ~l~~H~~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~t~-~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~ 627 (695)
.+..|...+.++.|+|||+.|+.++ .++.+.||+++.. .....+ ++.+ .++.|+|+|+.|+.++.++ +.+||+.
T Consensus 286 ~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~ 361 (429)
T PRK01742 286 QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLT 361 (429)
T ss_pred eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECC
Confidence 3455666788999999999776555 5788888877532 222233 4444 5678999999998887765 5569998
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC--CCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl--~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
++... .+..+ ....++.|+|+|..++ +++.++.+++|++ .+|.++..+.+|.+.|..++| +|.
T Consensus 362 ~g~~~--~lt~~-~~~~~~~~sPdG~~i~-~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~w-sp~ 426 (429)
T PRK01742 362 SGSTE--VLSST-FLDESPSISPNGIMII-YSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAW-SPY 426 (429)
T ss_pred CCCeE--EecCC-CCCCCceECCCCCEEE-EEEcCCCceEEEEEECCCCceEEccCCCCCCCCccc-CCC
Confidence 87642 22222 1346788999998555 5566888888876 368899999999988999999 983
No 192
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.15 E-value=2.6e-09 Score=115.50 Aligned_cols=137 Identities=19% Similarity=0.197 Sum_probs=111.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 005473 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (695)
Q Consensus 551 l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~ 630 (695)
..+|.+....++.+|+...+++++.|+.|+||+ ..+++.+.. -..++.|+.|+|.| .++.|...|...|.|+.+..
T Consensus 364 v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~ 439 (626)
T KOG2106|consen 364 VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD 439 (626)
T ss_pred EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccce
Confidence 457888999999999999999999999999999 455555443 35688999999998 99999999999999999844
Q ss_pred eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEE-EEEecCCCcEEEEEEeCCC
Q 005473 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA-GVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 631 ~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v-~~~~~h~~~VtsVaf~sPd 695 (695)
.+..-.. ...+++|.|+|+|. +||.|+.|+.|+||-+.. |... +.-+.|..+|+.+.| ++|
T Consensus 440 -lv~~~~d-~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDw-S~D 502 (626)
T KOG2106|consen 440 -LVTIHTD-NEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDW-SSD 502 (626)
T ss_pred -eEEEEec-CCceEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeee-cCC
Confidence 3444444 78899999999998 788999999999999864 3333 333344489999999 875
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=3.9e-10 Score=118.32 Aligned_cols=144 Identities=18% Similarity=0.238 Sum_probs=112.2
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------CeEEEEec-ccCCCeEEEEEcCCCCEEEEEeCCCe
Q 005473 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRT 620 (695)
Q Consensus 548 v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t------~~~~~~l~-~H~~~V~~v~~spdg~~LaTgs~Dgt 620 (695)
.+.+.+|.+-|+++.|+.++++|++|+.|..++||+++. .+++.... .|.+.|.|++|....++|++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 345679999999999999999999999999999999853 35555443 35589999999999999999999999
Q ss_pred EEEEECCCCCeeEEEEec--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe-EEE--EEecCCCcEEEEEEeCC
Q 005473 621 VRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAG--VFKNFFESFVSVRVVQP 694 (695)
Q Consensus 621 IrvWDl~t~~~~l~~~~g--h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~-~v~--~~~~h~~~VtsVaf~sP 694 (695)
|.+-|+.+... +.++.. ..+.|+.+..+|... +|++.+.++.|.|||++... .+. ..-.......++.| ||
T Consensus 129 VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F-~P 204 (609)
T KOG4227|consen 129 VIKHDIETKQS-IYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF-HP 204 (609)
T ss_pred eEeeeccccee-eeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee-cC
Confidence 99999998553 555542 235899999999955 77788999999999998643 221 11122344567777 77
No 194
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=9e-10 Score=121.09 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=115.0
Q ss_pred CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCC--EEEEEeCCC
Q 005473 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADR 619 (695)
Q Consensus 542 ~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~--~LaTgs~Dg 619 (695)
.+...+...+++|++.|.||...|.|.+|++|+.||+|+||.+.++.|++++.- .+.|.||+|+|.+. .||++- +.
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~-~~ 464 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAV-GE 464 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEe-cC
Confidence 355566777899999999999999999999999999999999999999998863 66899999999654 344443 33
Q ss_pred eEEEEECCCC------------------------------------CeeEEEEecCCCCeEEEEEecCCCeEEEEEeC--
Q 005473 620 TVRVWDTENP------------------------------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-- 661 (695)
Q Consensus 620 tIrvWDl~t~------------------------------------~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~-- 661 (695)
++.|-+..-+ ..-+.....|...|..|.||..|.+|.+++..
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 3544443211 01123444678889999999999966554443
Q ss_pred CCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 662 NSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 662 Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
...|.|.++.......-|..-.+.|.++.| ||.
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~F-HPs 577 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKF-HPS 577 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEe-cCC
Confidence 356999999887777777666778899999 984
No 195
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.15 E-value=1.7e-09 Score=116.87 Aligned_cols=158 Identities=23% Similarity=0.313 Sum_probs=121.1
Q ss_pred EEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 005473 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (695)
Q Consensus 509 lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~ 588 (695)
+++|..+|+|.+|... .. +..+....|.+.|.|++.-.+|.+|- |+.|.+|..||-. .+
T Consensus 260 viTgDS~G~i~Iw~~~----------------~~---~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~-y~ 318 (626)
T KOG2106|consen 260 VITGDSGGNILIWSKG----------------TN---RISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN-YR 318 (626)
T ss_pred EEeecCCceEEEEeCC----------------Cc---eEEeEeeecCCceEEEEEecCccEee-cCccceEEecccc-cc
Confidence 5788888999999431 11 22333449999999999999998665 9999999999831 00
Q ss_pred E------------E-----------------------------EEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473 589 V------------K-----------------------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (695)
Q Consensus 589 ~------------~-----------------------------~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~ 627 (695)
. + .+..+|....+.++.+|+...++|++.|+.|++|+ +
T Consensus 319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~ 397 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D 397 (626)
T ss_pred ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C
Confidence 0 0 11236888889999999999999999999999999 2
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
..++.+.. ...++.|++|+|.| .++.|...|...+.|+.+...+...+. ..++++|+| +|+
T Consensus 398 --~k~~wt~~-~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~y-sp~ 458 (626)
T KOG2106|consen 398 --HKLEWTKI-IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRY-SPD 458 (626)
T ss_pred --CceeEEEE-ecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEec-CCceEEEEE-cCC
Confidence 22233322 34679999999998 677999999999999999666666555 899999999 986
No 196
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.13 E-value=2.1e-09 Score=109.88 Aligned_cols=136 Identities=17% Similarity=0.158 Sum_probs=113.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeE
Q 005473 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSL 633 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~--~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l 633 (695)
...++.|++.+..++++..+|.+.+-+........ .+++|...++...|+. +.+++++|++|+.+..||+|.++.++
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 35688999999999999999999966655554444 7899999999999976 45789999999999999999665545
Q ss_pred EE-EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEecCCCcEEEEEEeCC
Q 005473 634 RT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 634 ~~-~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sP 694 (695)
.. ...|...|+++.-+|..+.++++|+.|..|++||.|+ ++++..-+. .+.|+.|.+ ||
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~-~p 263 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKH-HP 263 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEe-cc
Confidence 44 6678899999999998888999999999999999995 677766543 388999999 88
No 197
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=6.8e-10 Score=116.55 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=122.8
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~-~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl 584 (695)
++|+++|+.|..+++|....... ..+.+++.... .|...|.|++|....++|++|+.+++|.+.|+
T Consensus 68 ~~~L~SGGDD~~~~~W~~de~~~-------------~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi 134 (609)
T KOG4227|consen 68 DRFLASGGDDMHGRVWNVDELMV-------------RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI 134 (609)
T ss_pred CeEEeecCCcceeeeechHHHHh-------------hcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence 49999999999999995532210 11113333333 35688999999999999999999999999999
Q ss_pred CCCeEEEEecc--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE--EEEecCCCCeEEEEEecCCCeEEEEEe
Q 005473 585 ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (695)
Q Consensus 585 ~t~~~~~~l~~--H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l--~~~~gh~~~V~sl~fspdg~~llaSgs 660 (695)
++.+.+.++.. ..+.|+.+..+|..+.|++.+.+|.|.+||.+....++ ...........++.|+|..+.||++.+
T Consensus 135 Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~ 214 (609)
T KOG4227|consen 135 ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNS 214 (609)
T ss_pred ccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEecc
Confidence 99888877642 34699999999999999999999999999998754222 233334456788999999999999999
Q ss_pred CCCcEEEEECCCC
Q 005473 661 NNSEIRYWSINNG 673 (695)
Q Consensus 661 ~Dg~IriWDl~tg 673 (695)
..+-+-+||++..
T Consensus 215 ~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 215 ETGGPNVFDRRMQ 227 (609)
T ss_pred ccCCCCceeeccc
Confidence 9999999999853
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=9.1e-10 Score=127.31 Aligned_cols=136 Identities=17% Similarity=0.250 Sum_probs=103.3
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe---EEEEecccCCC--eEEEEEcCCCC-EEEEEeCCCeEEEEECC
Q 005473 555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQW--ITDVRFSPSLS-RLATSSADRTVRVWDTE 627 (695)
Q Consensus 555 ~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~~---~~~~l~~H~~~--V~~v~~spdg~-~LaTgs~DgtIrvWDl~ 627 (695)
...|+++.-+. .|+.|+.|..||.|++||.+.-. .+...+.|... |..+.+.+.|- .|++|+.||.|++||++
T Consensus 1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred CccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence 34466665543 46899999999999999987533 56778889888 99999988543 59999999999999999
Q ss_pred CC-CeeEEEEecCC--C-CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC-------CCcEEEEEEeCC
Q 005473 628 NP-DYSLRTFTGHS--T-TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF-------FESFVSVRVVQP 694 (695)
Q Consensus 628 t~-~~~l~~~~gh~--~-~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h-------~~~VtsVaf~sP 694 (695)
.. +....+...|- + .++++..|++.+ ++|+|+. +.|.||++. |+.+..++.+ .+.+.|++| ||
T Consensus 1288 ~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~F-HP 1361 (1387)
T KOG1517|consen 1288 MSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAF-HP 1361 (1387)
T ss_pred cCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeee-cc
Confidence 73 33233344443 3 589999999977 8888887 999999986 5555554422 467799999 98
No 199
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.12 E-value=2.5e-09 Score=107.12 Aligned_cols=130 Identities=18% Similarity=0.327 Sum_probs=91.0
Q ss_pred EEEEEcCCCCEEEEEeC---C-------CcEEEEECCC-CeEEEEec-ccCCCeEEEEEcCCCCEEEEE--eCCCeEEEE
Q 005473 559 ESCHFSPDGKLLATGGH---D-------KKAVLWCTES-FTVKSTLE-EHTQWITDVRFSPSLSRLATS--SADRTVRVW 624 (695)
Q Consensus 559 ~~v~fspdg~~LaSgs~---D-------g~V~IWDl~t-~~~~~~l~-~H~~~V~~v~~spdg~~LaTg--s~DgtIrvW 624 (695)
..+.|+++|++|+.-.. | +...||.++. ...+..+. ...++|.+++|+|++..|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46889999987654332 2 3355555532 23333443 235679999999999886544 457899999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 625 Dl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs--~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
|++. + .+..+. ...+..|.|+|+|+.++++|. ..|.|.+||+++.+++..+.. ..++.++| +||
T Consensus 89 d~~~-~-~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~W-sPd 154 (194)
T PF08662_consen 89 DVKG-K-KIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEW-SPD 154 (194)
T ss_pred cCcc-c-EeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEE-cCC
Confidence 9972 3 355553 467889999999996665442 357899999999999888753 34789999 996
No 200
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=8.1e-10 Score=114.81 Aligned_cols=157 Identities=19% Similarity=0.248 Sum_probs=115.6
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC-CCeEEEEEcCCCCEEEEEeC----CCcEE
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGH----DKKAV 580 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~-~~V~~v~fspdg~~LaSgs~----Dg~V~ 580 (695)
.+.|.+|+.||+|++|+...... ........|. .+..|++.+-.++.|++|.. |-.|.
T Consensus 84 ~h~v~s~ssDG~Vr~wD~Rs~~e-----------------~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~ 146 (376)
T KOG1188|consen 84 PHGVISCSSDGTVRLWDIRSQAE-----------------SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVV 146 (376)
T ss_pred CCeeEEeccCCeEEEEEeecchh-----------------hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEE
Confidence 37889999999999997754321 1111223333 45677777767778887754 67799
Q ss_pred EEECCCCeE-EEEe-cccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCe--eEEEEecCCCCeEEEEEecCCCeE
Q 005473 581 LWCTESFTV-KSTL-EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDL 655 (695)
Q Consensus 581 IWDl~t~~~-~~~l-~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~--~l~~~~gh~~~V~sl~fspdg~~l 655 (695)
+||++..+. +..+ +.|.+.|++++|+| +.++|+|||.||.|.|||+..... .+.....|.+.|.++.|+.++-.-
T Consensus 147 lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykr 226 (376)
T KOG1188|consen 147 LWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKR 226 (376)
T ss_pred EEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcce
Confidence 999998765 5554 77999999999999 577999999999999999976432 222333477889999999887223
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEE
Q 005473 656 LCSCDNNSEIRYWSINNGSCAGVF 679 (695)
Q Consensus 656 laSgs~Dg~IriWDl~tg~~v~~~ 679 (695)
|.+-+..++..+|++..+.++..+
T Consensus 227 I~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 227 IMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred EEEEEccCceeEEEccCCChhhcc
Confidence 556778999999999987765443
No 201
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=1.1e-09 Score=122.61 Aligned_cols=138 Identities=20% Similarity=0.238 Sum_probs=98.2
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEE--EEecccCCCeEEEEEcCCCCEEEEEe-CCCeEE
Q 005473 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSS-ADRTVR 622 (695)
Q Consensus 549 ~~l~~H~~~V~~v~fspdg~~LaSgs~D---g~V~IWDl~t~~~~--~~l~~H~~~V~~v~~spdg~~LaTgs-~DgtIr 622 (695)
..+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++.. ..+.+| ..+++|+|||+.|+.++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 3456778889999999999999887754 36999999887643 333333 45789999999887764 677655
Q ss_pred E--EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-eEEEEEecCCCcEEEEEEeCCC
Q 005473 623 V--WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 623 v--WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg-~~v~~~~~h~~~VtsVaf~sPd 695 (695)
| ||+.++. +..+..+...+.++.|+|||+.++++++.+|.++||+++.. .....+ .+.. ..++| +||
T Consensus 274 Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~-SpD 343 (429)
T PRK01742 274 IYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQI-SAD 343 (429)
T ss_pred EEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccC-CCC
Confidence 5 4666543 45566677778999999999988877777888999987532 222333 3332 34667 765
No 202
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.10 E-value=1.2e-09 Score=112.82 Aligned_cols=140 Identities=15% Similarity=0.228 Sum_probs=117.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 005473 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (695)
Q Consensus 554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~---~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~ 630 (695)
-..+|+|.+|++|+..+|.+...+.|.||..... +..+++..|...|+.|+|+|..+.|++++.|+..+||....+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 3567999999999999999999999999988654 4678899999999999999999999999999999999994433
Q ss_pred --eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE--E--EEEecCCCcEEEEEEeCCC
Q 005473 631 --YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--A--GVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 631 --~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~--v--~~~~~h~~~VtsVaf~sPd 695 (695)
.+.-++..|...+++|.|+|.+. .|++|+.-..|.||-+....- + ..-+.+...|++++| ||+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW-hpn 157 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW-HPN 157 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec-cCC
Confidence 23455667889999999999976 777999899999999875332 1 223367889999999 985
No 203
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.06 E-value=6.4e-09 Score=107.51 Aligned_cols=188 Identities=16% Similarity=0.208 Sum_probs=138.1
Q ss_pred EEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEec-CCCCCeEEEE
Q 005473 484 LLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCH 562 (695)
Q Consensus 484 ~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~-~H~~~V~~v~ 562 (695)
-..|+|||. .+.+-+.|..+.+|..+.+....+.-.. ..+.....++ .....|+..+
T Consensus 54 gckWSPDGS---------------ciL~~sedn~l~~~nlP~dlys~~~~~~-------~~~~~~~~~r~~eg~tvydy~ 111 (406)
T KOG2919|consen 54 GCKWSPDGS---------------CILSLSEDNCLNCWNLPFDLYSKKADGP-------LNFSKHLSYRYQEGETVYDYC 111 (406)
T ss_pred cceeCCCCc---------------eEEeecccCeeeEEecChhhcccCCCCc-------cccccceeEEeccCCEEEEEE
Confidence 347999884 4567778999999988765432221111 1111111111 1234478888
Q ss_pred Ec-------CCCCEEEEEeCCCcEEEEECCCCeEEEEecc--cC---CCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCC
Q 005473 563 FS-------PDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HT---QWITDVRFSPSLSRLATSSADRTVRVWDT-ENP 629 (695)
Q Consensus 563 fs-------pdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~--H~---~~V~~v~~spdg~~LaTgs~DgtIrvWDl-~t~ 629 (695)
|- |+.+++++.+.|.-|++||.-+++....+.+ |- ..-.+++|+|||..|+.| ...+|||||+ |.+
T Consensus 112 wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpG 190 (406)
T KOG2919|consen 112 WYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPG 190 (406)
T ss_pred eeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCC
Confidence 85 5778999999999999999999998877754 32 234689999999999887 5789999999 554
Q ss_pred Cee-EEE-----EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 630 DYS-LRT-----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 630 ~~~-l~~-----~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
..| +.. ..+..+-|.+++|+|.....++.|+....+-||.-..+.++..+.+|.+.||.++| +|+
T Consensus 191 r~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~-~ed 261 (406)
T KOG2919|consen 191 RDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQW-CED 261 (406)
T ss_pred CCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEe-ccC
Confidence 432 111 12336778999999998878999998888888888888999999999999999999 875
No 204
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=2.7e-09 Score=112.63 Aligned_cols=166 Identities=13% Similarity=0.116 Sum_probs=128.1
Q ss_pred CCCCcEEEEeeCC--CcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCc
Q 005473 503 TDMDRFVDDGSLD--DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKK 578 (695)
Q Consensus 503 ~~~~~~lasgS~D--~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd--g~~LaSgs~Dg~ 578 (695)
.....++++|+.. ..+++|+..... .+|....-.. ..+ .+ .-.-.++++.|-+. ...||+++.-+.
T Consensus 158 ~~~p~Iva~GGke~~n~lkiwdle~~~-------qiw~aKNvpn-D~L-~L-rVPvW~tdi~Fl~g~~~~~fat~T~~hq 227 (412)
T KOG3881|consen 158 DTDPYIVATGGKENINELKIWDLEQSK-------QIWSAKNVPN-DRL-GL-RVPVWITDIRFLEGSPNYKFATITRYHQ 227 (412)
T ss_pred CCCCceEecCchhcccceeeeecccce-------eeeeccCCCC-ccc-cc-eeeeeeccceecCCCCCceEEEEeccee
Confidence 3455788899988 889999765431 2221111000 000 00 00123678899887 789999999999
Q ss_pred EEEEECCCC-eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEE
Q 005473 579 AVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (695)
Q Consensus 579 V~IWDl~t~-~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~lla 657 (695)
|++||.+.+ +++..+.--..+|+++...|++++|++|..-|.+..||++.++.....+.+..+.|++|..||.++ +++
T Consensus 228 vR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~la 306 (412)
T KOG3881|consen 228 VRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLA 306 (412)
T ss_pred EEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc-eEE
Confidence 999999864 467777777889999999999999999999999999999998876666899999999999999988 888
Q ss_pred EEeCCCcEEEEECCCCeEEEEE
Q 005473 658 SCDNNSEIRYWSINNGSCAGVF 679 (695)
Q Consensus 658 Sgs~Dg~IriWDl~tg~~v~~~ 679 (695)
+|+-|..|||+|+.+.+.+...
T Consensus 307 s~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 307 SCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred eeccceeEEEeecccchhhhhh
Confidence 9999999999999997666443
No 205
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.06 E-value=8.4e-09 Score=113.92 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=108.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEec--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCe
Q 005473 566 DGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643 (695)
Q Consensus 566 dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~--~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V 643 (695)
|-..|+-|...|.|.+|++..++....+. .|.+.|.++.++.+-..|.+++.|+.|.+|+...... ++.+.+-...+
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-~~~~~~~~~~~ 147 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-IRIWKEQKPLV 147 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-eeeeccCCCcc
Confidence 44568888889999999999999888885 6899999999999889999999999999999998654 77888888889
Q ss_pred EEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 644 ~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf 691 (695)
.+++++|||. ++++++ +.|++||+.+++.+.+|.||.++|.++.|
T Consensus 148 ~sl~is~D~~-~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 148 SSLCISPDGK-ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred ceEEEcCCCC-EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 9999999988 555664 68999999999999999999999999998
No 206
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.06 E-value=1.1e-09 Score=127.07 Aligned_cols=143 Identities=22% Similarity=0.369 Sum_probs=119.5
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~ 585 (695)
+-++++|+.-+-|-+|....+. .++ .+.+|.+.|..+.|+.||++++++++|.++|+|+++
T Consensus 145 ~~~i~~gsv~~~iivW~~~~dn------------------~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~ 205 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHEDN------------------KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPID 205 (967)
T ss_pred EEEEEeccccccEEEEeccccC------------------Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecc
Confidence 3577888888888888554211 111 578999999999999999999999999999999999
Q ss_pred CCeEEE-EecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCeEEEEEeCCC
Q 005473 586 SFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNS 663 (695)
Q Consensus 586 t~~~~~-~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~-~~V~sl~fspdg~~llaSgs~Dg 663 (695)
+.+... +.-+|+..|+.++|.|+ .++|++.|.+.++|+..... +.++.+|. ..+..++..++.. ++++++.||
T Consensus 206 s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~--l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds 280 (967)
T KOG0974|consen 206 SREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ--LEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDS 280 (967)
T ss_pred cccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce--ehhhhhhhhcceeEEEEcCCce-EEEeeccCc
Confidence 988765 67789999999999998 99999999999999876432 55788886 4689999887754 788999999
Q ss_pred cEEEEECCC
Q 005473 664 EIRYWSINN 672 (695)
Q Consensus 664 ~IriWDl~t 672 (695)
.|++||+..
T Consensus 281 ~lk~~~l~~ 289 (967)
T KOG0974|consen 281 TLKLWDLNG 289 (967)
T ss_pred chhhhhhhc
Confidence 999999864
No 207
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=3.4e-09 Score=122.66 Aligned_cols=181 Identities=13% Similarity=0.157 Sum_probs=122.4
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~ 585 (695)
..++.+|+.||.|++|.--............|..-.+ .+.+-.+.-.-+.|.....+|+++|+-..|+|||+.
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~-------~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSD-------QLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeeccccc-------cCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc
Confidence 3678899999999999432221111112222211111 111222222456787766667777778999999999
Q ss_pred CCeEEEEec-ccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCe--eEEEEecCCCC--eEEEEEecCCCeEEEEE
Q 005473 586 SFTVKSTLE-EHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTT--VMSLDFHPSKEDLLCSC 659 (695)
Q Consensus 586 t~~~~~~l~-~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~--~l~~~~gh~~~--V~sl~fspdg~~llaSg 659 (695)
...++..+. +....|+++.-+- .|+.|+.|..||.||+||.+.... .+..++.|... |..+.+-+.|-.-+++|
T Consensus 1196 ~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSg 1275 (1387)
T KOG1517|consen 1196 KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSG 1275 (1387)
T ss_pred cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeee
Confidence 888777663 3445566665543 478999999999999999986543 57788889888 99999998776667799
Q ss_pred eCCCcEEEEECCCCeE--EEEEecCC--C-cEEEEEEeCC
Q 005473 660 DNNSEIRYWSINNGSC--AGVFKNFF--E-SFVSVRVVQP 694 (695)
Q Consensus 660 s~Dg~IriWDl~tg~~--v~~~~~h~--~-~VtsVaf~sP 694 (695)
+.||.|++||+|.... ...+..|. + .++++.. |+
T Consensus 1276 s~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~V-H~ 1314 (1387)
T KOG1517|consen 1276 SQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTV-HE 1314 (1387)
T ss_pred ccCCeEEEEecccCcccccceeeeccccCccceeeee-cc
Confidence 9999999999997422 22333443 3 4788877 75
No 208
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=4.6e-09 Score=109.91 Aligned_cols=177 Identities=14% Similarity=0.132 Sum_probs=119.5
Q ss_pred CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEec-CCCC
Q 005473 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTS 556 (695)
Q Consensus 478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~-~H~~ 556 (695)
.+.+...+.||..- ..++.+..|.+|++|+..+. +...++ ....
T Consensus 97 s~~dlr~~aWhqH~---------------~~fava~nddvVriy~ksst--------------------~pt~Lks~sQr 141 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHI---------------IAFAVATNDDVVRIYDKSST--------------------CPTKLKSVSQR 141 (445)
T ss_pred hhcceeeEeechhh---------------hhhhhhccCcEEEEeccCCC--------------------CCceecchhhc
Confidence 44577788888733 33577889999999954321 111121 1234
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC----eE----------EEEecccCCCeEEEEEcCCCCEEEEEeC-CCe
Q 005473 557 KVESCHFSPD-GKLLATGGHDKKAVLWCTESF----TV----------KSTLEEHTQWITDVRFSPSLSRLATSSA-DRT 620 (695)
Q Consensus 557 ~V~~v~fspd-g~~LaSgs~Dg~V~IWDl~t~----~~----------~~~l~~H~~~V~~v~~spdg~~LaTgs~-Dgt 620 (695)
.|+|++|-|- ++.|+.|+..| |+||..... .. +..-.+| .+|++++|.+||..+++++. |..
T Consensus 142 nvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsss 219 (445)
T KOG2139|consen 142 NVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSS 219 (445)
T ss_pred ceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcce
Confidence 5999999995 45788888766 999976421 11 1112344 68999999999999999986 567
Q ss_pred EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEecCCCcEEEEEEeCCC
Q 005473 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 621 IrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sPd 695 (695)
|.|||++++.. +....-..+.++-+.|+||+.++| ++..|+..++|.... -.+.+-. -..+.|.+-.| +|.
T Consensus 220 i~iWdpdtg~~-~pL~~~glgg~slLkwSPdgd~lf-aAt~davfrlw~e~q~wt~erw~-lgsgrvqtacW-spc 291 (445)
T KOG2139|consen 220 IMIWDPDTGQK-IPLIPKGLGGFSLLKWSPDGDVLF-AATCDAVFRLWQENQSWTKERWI-LGSGRVQTACW-SPC 291 (445)
T ss_pred EEEEcCCCCCc-ccccccCCCceeeEEEcCCCCEEE-Eecccceeeeehhcccceeccee-ccCCceeeeee-cCC
Confidence 99999998764 322222346788999999999665 667799999996543 3333333 33347777777 763
No 209
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.03 E-value=1.1e-08 Score=107.43 Aligned_cols=134 Identities=19% Similarity=0.271 Sum_probs=107.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc---cCCCeEEEEEcCCCCEEEEE-e-CCCeEEEEECCCCC
Q 005473 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFSPSLSRLATS-S-ADRTVRVWDTENPD 630 (695)
Q Consensus 556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~---H~~~V~~v~~spdg~~LaTg-s-~DgtIrvWDl~t~~ 630 (695)
.+|.+|.++. +.|+++-.+. |+|||+++.+.++++.. +...+.++.+++.+.+|+.- + ..|.|.|||+.+-.
T Consensus 88 t~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~ 164 (391)
T KOG2110|consen 88 TSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ 164 (391)
T ss_pred CceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce
Confidence 4578888864 4566666554 99999999999988853 45557777777777788764 3 36889999999855
Q ss_pred eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc-EEEEECCCCeEEEEEecCC--CcEEEEEEeCCC
Q 005473 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKNFF--ESFVSVRVVQPR 695 (695)
Q Consensus 631 ~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~-IriWDl~tg~~v~~~~~h~--~~VtsVaf~sPd 695 (695)
++.++..|++.+-+++|+++|. ++|++++.|+ ||||++.+|..+..|+-.. -.|.+|+| ||+
T Consensus 165 -~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F-s~d 229 (391)
T KOG2110|consen 165 -PVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF-SPD 229 (391)
T ss_pred -eeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE-CCC
Confidence 5889999999999999999998 8889998886 8999999999999999554 45688999 986
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.01 E-value=2.4e-09 Score=116.36 Aligned_cols=134 Identities=11% Similarity=0.170 Sum_probs=99.8
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
.-+.+.+.||.|++|.- .+. .-.++.....+|+|++|.|+.+.++-|-. +.+.|=-+..
T Consensus 117 tgLlt~GEDG~iKiWSr-----------------sGM---LRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~ 175 (737)
T KOG1524|consen 117 AGLLTAGEDGVIKIWSR-----------------SGM---LRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAA 175 (737)
T ss_pred ceeeeecCCceEEEEec-----------------cch---HHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeeccc
Confidence 45678889999999922 110 01122334567999999998876555443 4566666666
Q ss_pred CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 005473 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (695)
Q Consensus 587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir 666 (695)
...+..++.|.+-|.++.|++...++++|+.|...+|||.-. . .+.+...|.-+|++++|.|+ + +++.++. .+.|
T Consensus 176 n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~-~Lf~S~~~ey~ITSva~npd-~-~~~v~S~-nt~R 250 (737)
T KOG1524|consen 176 NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-A-NLFTSAAEEYAITSVAFNPE-K-DYLLWSY-NTAR 250 (737)
T ss_pred ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-c-ccccCChhccceeeeeeccc-c-ceeeeee-eeee
Confidence 566678899999999999999999999999999999999874 3 46777789999999999999 3 4555553 3444
No 211
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=9.5e-09 Score=117.72 Aligned_cols=169 Identities=20% Similarity=0.260 Sum_probs=129.2
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC---CEEEEEeCCCcEE
Q 005473 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG---KLLATGGHDKKAV 580 (695)
Q Consensus 504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg---~~LaSgs~Dg~V~ 580 (695)
...+++... .+..|++|....+ .++..+.+|..+++.+.+.|.. .++++++.||+|+
T Consensus 26 nD~k~l~~~-~~~~V~VyS~~Tg-------------------~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~ 85 (792)
T KOG1963|consen 26 NDAKFLFLC-TGNFVKVYSTATG-------------------ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIR 85 (792)
T ss_pred cCCcEEEEe-eCCEEEEEecchH-------------------hhhhhcccccCccceeeecCCCccceEEEEEecCccEE
Confidence 333555544 4578888844332 3556788999999999998854 4788999999999
Q ss_pred EEECCCCeEEEEec------------------------------------------------------------------
Q 005473 581 LWCTESFTVKSTLE------------------------------------------------------------------ 594 (695)
Q Consensus 581 IWDl~t~~~~~~l~------------------------------------------------------------------ 594 (695)
+||...+..++++.
T Consensus 86 vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~ 165 (792)
T KOG1963|consen 86 VWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKS 165 (792)
T ss_pred EecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCcc
Confidence 99876544333221
Q ss_pred -------------------------------------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC---CCCeeEE
Q 005473 595 -------------------------------------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPDYSLR 634 (695)
Q Consensus 595 -------------------------------------~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~---t~~~~l~ 634 (695)
.|...++|++++|+++++++|..||.|.+|.-- ..+....
T Consensus 166 I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCT 245 (792)
T ss_pred EEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccce
Confidence 145557899999999999999999999999542 2234457
Q ss_pred EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
.+.-|...|+++.|+++|.+++ +|+..|.+.+|-+.+++ -.-+.--.++|..+.+ +||
T Consensus 246 ~lHWH~~~V~~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~v-S~d 303 (792)
T KOG1963|consen 246 LLHWHHDEVNSLSFSSDGAYLL-SGGREGVLVLWQLETGK-KQFLPRLGSPILHIVV-SPD 303 (792)
T ss_pred EEEecccccceeEEecCCceEe-ecccceEEEEEeecCCC-cccccccCCeeEEEEE-cCC
Confidence 8888999999999999999555 99999999999999987 4445556788899998 876
No 212
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=2.9e-08 Score=111.42 Aligned_cols=142 Identities=13% Similarity=0.138 Sum_probs=104.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEE-EEeCCCe--EE
Q 005473 549 QLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VR 622 (695)
Q Consensus 549 ~~l~~H~~~V~~v~fspdg~~LaSgs~---Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~La-Tgs~Dgt--Ir 622 (695)
..+..|...|.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+|||+.|+ +.+.++. |+
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 345577888999999999998887764 468999999887654 4555677788999999998775 5555655 88
Q ss_pred EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 623 vWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+||++++. +..+..+.+.+.+..|+|||+.++++...+| .|++||+..++.. .+..+...+...+| +||
T Consensus 274 ~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~-Spd 344 (435)
T PRK05137 274 TMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVW-SPR 344 (435)
T ss_pred EEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEE-CCC
Confidence 88988754 3556666667788999999998776665544 5888888766543 34334455667788 885
No 213
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.98 E-value=1.2e-09 Score=117.13 Aligned_cols=142 Identities=12% Similarity=0.185 Sum_probs=120.8
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD 625 (695)
.++++++.|.. |..+.|-|.--+|++++..|.++.-|+.+|+.+..+..-.+.+..++-+|-...+-+|...|+|.+|.
T Consensus 201 tElHClk~~~~-v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 201 TELHCLKRHIR-VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred cEEeehhhcCc-hhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecC
Confidence 57788887765 89999999998999999999999999999999999988889999999999888999999999999999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf 691 (695)
..... ++..+.+|.+.|.+|+++++|. ++++.+.|..|+|||++....+.++.. ..+...++|
T Consensus 280 P~ske-PLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~ 342 (545)
T KOG1272|consen 280 PNSKE-PLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSL 342 (545)
T ss_pred CCCcc-hHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccccccceeec-CCCcccccc
Confidence 98755 4667778999999999999998 677999999999999998776665543 223344444
No 214
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.98 E-value=5.2e-09 Score=111.05 Aligned_cols=161 Identities=17% Similarity=0.213 Sum_probs=110.3
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (695)
Q Consensus 504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD 583 (695)
+..++++++..+....++++..... +..+....++......+..+..+......-.+++++.+.+|.
T Consensus 72 ~~~~llAv~~~~K~~~~f~~~~~~~-------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 72 DSGRLVAVATSSKQRAVFDYRENPK-------------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred CCceEEEEEeCCCceEEEEEecCCC-------------cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeec
Confidence 3447888887777766665543321 111111122222222333444333333333445566677777
Q ss_pred CCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (695)
Q Consensus 584 l~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg 663 (695)
...+.+. -+-||-+.+++|+|+||+.+|+|+..|..|||-.+.........+-||+..|..++.-++. .|.+|+.|+
T Consensus 139 ~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~ 215 (390)
T KOG3914|consen 139 ADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDK 215 (390)
T ss_pred ccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCCCC
Confidence 6664444 4558999999999999999999999999999998876554334566899999999998773 467999999
Q ss_pred cEEEEECCCCeEEEEEe
Q 005473 664 EIRYWSINNGSCAGVFK 680 (695)
Q Consensus 664 ~IriWDl~tg~~v~~~~ 680 (695)
+|++||+++|+++.++.
T Consensus 216 tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 216 TLRLWDITSGKLLDTCD 232 (390)
T ss_pred cEEEEecccCCcccccc
Confidence 99999999999997765
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=2.5e-08 Score=111.85 Aligned_cols=135 Identities=15% Similarity=0.155 Sum_probs=88.4
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCCCcEEEEEC--CCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEC--CC
Q 005473 555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT--EN 628 (695)
Q Consensus 555 ~~~V~~v~fspdg~~La-Sgs~Dg~V~IWDl--~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-DgtIrvWDl--~t 628 (695)
.+.+.+.+|+|||+.|+ +.+.|+...||.+ .++. ...+..+.+.+..+.|+|||+.|+..+. ++...||.+ .+
T Consensus 239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence 34467899999999776 5677887676654 4443 4556656666778899999998876554 466666654 44
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 629 ~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+.. ..+..+.......+|+|||+.+++++..++ .|.+||+.+++... +..+ .....+.| +||
T Consensus 318 g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~-spd 381 (427)
T PRK02889 318 GAA--QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSF-APN 381 (427)
T ss_pred Cce--EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceE-CCC
Confidence 332 222222334557899999997765554433 69999998876543 3222 23366788 875
No 216
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.96 E-value=3.9e-08 Score=105.98 Aligned_cols=136 Identities=14% Similarity=0.183 Sum_probs=90.9
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEE-------EecccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECC
Q 005473 557 KVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKS-------TLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTE 627 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~t~~~~~-------~l~~H~~~V~~v~~spdg~~LaTgs~-DgtIrvWDl~ 627 (695)
...+++|+|+++++++++ .++.|+|||+.+...+. .+. .......+.|+|++++|++++. +++|.+||++
T Consensus 127 ~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 127 GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 367889999999886655 56999999997633221 111 1344678999999999988876 8999999997
Q ss_pred CC--Ce-eEEEEecC------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe----EEEEEecCCCcEEEEEEeCC
Q 005473 628 NP--DY-SLRTFTGH------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 628 t~--~~-~l~~~~gh------~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~----~v~~~~~h~~~VtsVaf~sP 694 (695)
.. .. .+..+..+ ......+.|+|++++++++...++.|.+|++.... .+..+... .....++| +|
T Consensus 206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~-~~ 283 (330)
T PRK11028 206 DPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNI-DH 283 (330)
T ss_pred CCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEE-CC
Confidence 42 21 22333221 12344688999999777766668999999996532 23333222 23356777 77
Q ss_pred C
Q 005473 695 R 695 (695)
Q Consensus 695 d 695 (695)
+
T Consensus 284 d 284 (330)
T PRK11028 284 S 284 (330)
T ss_pred C
Confidence 5
No 217
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=2.1e-08 Score=112.41 Aligned_cols=142 Identities=18% Similarity=0.177 Sum_probs=95.9
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEC
Q 005473 551 IPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDT 626 (695)
Q Consensus 551 l~~H~~~V~~v~fspdg~~LaSgs~D---g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~La-Tgs~DgtIrvWDl 626 (695)
+..+...|.+.+|+|||+.|+.++.+ ..|++||+.+++... +....+.+.+++|+|||+.|+ +.+.++...||.+
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 44567789999999999998877653 359999999887653 333445677899999998876 5677887666654
Q ss_pred CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC--CCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 627 ~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl--~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+.....+..+..+.+.+.+..|+|||+.+++++..+|...||.+ .+++... +..+.......+| +||
T Consensus 270 d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~-SpD 338 (427)
T PRK02889 270 NADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRI-SPD 338 (427)
T ss_pred ECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEE-CCC
Confidence 32222245566566667788999999988877666677777755 4444322 2222223345677 775
No 218
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.95 E-value=5e-08 Score=105.09 Aligned_cols=166 Identities=12% Similarity=0.128 Sum_probs=110.6
Q ss_pred EEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC-C
Q 005473 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE-S 586 (695)
Q Consensus 509 lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~-t 586 (695)
.++...|+.|.+|+..... ....+..+.. .+....++++|++++|++++ .++.|.+|+++ +
T Consensus 5 y~~~~~~~~I~~~~~~~~g----------------~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~ 67 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEG----------------ALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD 67 (330)
T ss_pred EEEcCCCCCEEEEEECCCC----------------ceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCC
Confidence 3444678999999663211 1233344432 34467899999999887765 47889999996 3
Q ss_pred CeE--EEEecccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCe---eEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 005473 587 FTV--KSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (695)
Q Consensus 587 ~~~--~~~l~~H~~~V~~v~~spdg~~LaTgs~-DgtIrvWDl~t~~~---~l~~~~gh~~~V~sl~fspdg~~llaSgs 660 (695)
+.. +.... ..+....+.|+|++++|++++. ++.|.+||+++... .+..+. +...+.+++|+|+++.+++++.
T Consensus 68 g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~ 145 (330)
T PRK11028 68 GALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCL 145 (330)
T ss_pred CceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeC
Confidence 332 22222 3345678999999999888764 88999999975332 223332 2345678899999998888888
Q ss_pred CCCcEEEEECCCCeEEE-------EEecCCCcEEEEEEeCCC
Q 005473 661 NNSEIRYWSINNGSCAG-------VFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 661 ~Dg~IriWDl~tg~~v~-------~~~~h~~~VtsVaf~sPd 695 (695)
.++.|++||+++...+. .+... .....++| +|+
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~-~pd 185 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVF-HPN 185 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEE-CCC
Confidence 89999999998632221 12222 33467888 885
No 219
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=5.9e-08 Score=108.97 Aligned_cols=138 Identities=13% Similarity=0.087 Sum_probs=94.7
Q ss_pred cCCCCCeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEE
Q 005473 552 PASTSKVESCHFSPDGKLLA-TGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWD 625 (695)
Q Consensus 552 ~~H~~~V~~v~fspdg~~La-Sgs~Dg~--V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-Dg--tIrvWD 625 (695)
..+.+.+.+.+|+|||+.|+ +.+.++. |++||+.++.. ..+..+.+.+...+|+|||+.|+..+. ++ .|++||
T Consensus 242 ~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 242 GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence 34555678899999999765 5555655 77779887765 456666677788999999998877663 33 588889
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D--g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+..+.. ..+..+.+.+....|+|||+.++++.... ..|.+||+..+. ...+.. ...+..+.| +||
T Consensus 321 ~~g~~~--~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~-spD 387 (435)
T PRK05137 321 ADGSNP--RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTW-APN 387 (435)
T ss_pred CCCCCe--EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeE-CCC
Confidence 876543 44443455677889999999777665433 368888876543 344432 224566778 775
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=3.7e-08 Score=110.54 Aligned_cols=137 Identities=11% Similarity=0.029 Sum_probs=95.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCC-Cc--EEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEE
Q 005473 552 PASTSKVESCHFSPDGKLLATGGHD-KK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWD 625 (695)
Q Consensus 552 ~~H~~~V~~v~fspdg~~LaSgs~D-g~--V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D---gtIrvWD 625 (695)
..+...+....|+|||+.|+.++.+ +. |+++|+.+++.. .+..+...+.+.+|+|+|++|+..+.+ ..|++||
T Consensus 283 t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~d 361 (429)
T PRK03629 283 TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 361 (429)
T ss_pred cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEE
Confidence 3344567889999999988776654 44 444577666543 444445556789999999998776543 3588999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
+.++.. ..+... ....+..|+|||..+++++...+ .+++|++ +|.....+.+|.+.+...+| +|
T Consensus 362 l~~g~~--~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~W-sp 427 (429)
T PRK03629 362 LATGGV--QVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAW-SP 427 (429)
T ss_pred CCCCCe--EEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCccc-CC
Confidence 987653 333322 23457889999997776655332 3777787 46677778888889999999 88
No 221
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.93 E-value=4e-08 Score=115.73 Aligned_cols=177 Identities=15% Similarity=0.145 Sum_probs=125.7
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005473 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (695)
Q Consensus 503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IW 582 (695)
.++..|+++||.||+|++|+...-. ..+...+...++.--...|.++.+.+.+..+|.++.||.|.+.
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~------------~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLE------------GEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhh------------cCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence 4455899999999999999764321 1112334444554456679999999999999999999999999
Q ss_pred ECCCC-------eEEEEeccc-CCCeEEE-EEcC-CCC-EEEEEeCCCeEEEEECCCCCeeEEEE--ecCCCCeEEEEEe
Q 005473 583 CTESF-------TVKSTLEEH-TQWITDV-RFSP-SLS-RLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFH 649 (695)
Q Consensus 583 Dl~t~-------~~~~~l~~H-~~~V~~v-~~sp-dg~-~LaTgs~DgtIrvWDl~t~~~~l~~~--~gh~~~V~sl~fs 649 (695)
+++-. .+.+....+ .+.|.++ +|.. ... .|+.+..-+.|..||++.... +.++ .-..+.|++++.+
T Consensus 1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~-~w~lk~~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD-AWRLKNQLRHGLVTSIVID 1204 (1431)
T ss_pred EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh-HHhhhcCccccceeEEEec
Confidence 98652 122222222 2333333 4433 233 677788889999999987442 2222 2223789999999
Q ss_pred cCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cCCCcEEEEEEeCC
Q 005473 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-NFFESFVSVRVVQP 694 (695)
Q Consensus 650 pdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~h~~~VtsVaf~sP 694 (695)
|.+. +++.|+..|.+.+||+|-+.++..+. ++..+|..|.. +|
T Consensus 1205 p~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~-~~ 1248 (1431)
T KOG1240|consen 1205 PWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWL-CP 1248 (1431)
T ss_pred CCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEe-ec
Confidence 9988 66699999999999999999988877 55678888776 65
No 222
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.91 E-value=4.3e-08 Score=108.39 Aligned_cols=146 Identities=21% Similarity=0.247 Sum_probs=122.4
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
..++-|...|.|.++....+. .+..-.-..|.+.|.++.|+.+-..|+|++.|+.|..|+...
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~-----------------it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~ 133 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGE-----------------ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE 133 (541)
T ss_pred eEEEeecCCccEEEEEecCCe-----------------EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc
Confidence 466777777777777443321 122222246999999999999999999999999999999999
Q ss_pred CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecC-----CCeEEEEEeC
Q 005473 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-----KEDLLCSCDN 661 (695)
Q Consensus 587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspd-----g~~llaSgs~ 661 (695)
...++.+.+....+.+++++||+..+++++ +.|++||+.+++. +.+|.||.+.|.++.|--+ |.++|.+...
T Consensus 134 ~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kev-v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~ 210 (541)
T KOG4547|consen 134 KVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEV-VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA 210 (541)
T ss_pred ceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceE-EEEecCCCcceEEEEEEEeccccccceeeecccc
Confidence 999999999999999999999999999997 7899999999665 9999999999999999877 7888878788
Q ss_pred CCcEEEEECCC
Q 005473 662 NSEIRYWSINN 672 (695)
Q Consensus 662 Dg~IriWDl~t 672 (695)
+..|.+|-+..
T Consensus 211 ~r~i~~w~v~~ 221 (541)
T KOG4547|consen 211 ERGITVWVVEK 221 (541)
T ss_pred ccceeEEEEEc
Confidence 88899998754
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=6.4e-08 Score=108.68 Aligned_cols=135 Identities=16% Similarity=0.117 Sum_probs=92.0
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CCe--EEEEECCC
Q 005473 555 TSKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRT--VRVWDTEN 628 (695)
Q Consensus 555 ~~~V~~v~fspdg~~La-Sgs~Dg--~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-Dgt--IrvWDl~t 628 (695)
.+.+.+++|+|||+.|+ +.+.++ .|++||+.+++.. .+..+......++|+||++.|+.++. ++. |+++|+.+
T Consensus 247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 34456889999999765 455555 5999999887654 45556666678999999998877663 444 77777776
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 629 ~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+.. ..+..+......++|+|||+.++++...++ .|.+||+.+++.. .+. +...+..+.| +||
T Consensus 326 g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~-spd 389 (433)
T PRK04922 326 GSA--ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSF-APN 389 (433)
T ss_pred CCe--EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceE-CCC
Confidence 553 223223345567899999997776654443 6999999887655 333 2223456677 775
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=5.3e-08 Score=109.35 Aligned_cols=142 Identities=23% Similarity=0.189 Sum_probs=100.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEE-EEeCCC--eEE
Q 005473 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR 622 (695)
Q Consensus 549 ~~l~~H~~~V~~v~fspdg~~LaSgs~D---g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~La-Tgs~Dg--tIr 622 (695)
..+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++... +..+.+.+.+++|+|+|+.|+ +.+.++ .|+
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 3445667789999999999998887743 469999998876543 334455566899999998775 455555 599
Q ss_pred EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 623 vWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~--IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+||+.++. +..+..+......++|+|||+.+++++..+|. |+++|+.+++.... ..+......++| +||
T Consensus 276 ~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~~~~~~~~-SpD 346 (433)
T PRK04922 276 VMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQGNYNARASV-SPD 346 (433)
T ss_pred EEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecCCCCccCEEE-CCC
Confidence 99998765 34555566666789999999988777666665 66677777654332 223233456788 875
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=1.4e-07 Score=105.82 Aligned_cols=132 Identities=16% Similarity=0.137 Sum_probs=89.2
Q ss_pred eEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC-Ce--EEEEECCCCCe
Q 005473 558 VESCHFSPDGKLLATG-GHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RT--VRVWDTENPDY 631 (695)
Q Consensus 558 V~~v~fspdg~~LaSg-s~Dg--~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D-gt--IrvWDl~t~~~ 631 (695)
+.+++|+|||+.|+.. +.+| .|++||+++++... +..+...+....|+|||+.|+.++.+ +. |+++|+.++..
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 4568999999987754 4444 58899998877654 44445677899999999988776653 44 55557766543
Q ss_pred eEEEEecCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 632 ~l~~~~gh~~~V~sl~fspdg~~llaSgs~D--g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
..+..+...+.+..|+|||+.+++++..+ ..|++||+.+++.. .+... .......| +||
T Consensus 324 --~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~-SpD 384 (429)
T PRK03629 324 --QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSI-APN 384 (429)
T ss_pred --EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceE-CCC
Confidence 34444445567899999999777666544 35888999887644 33321 12245677 775
No 226
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.89 E-value=4.3e-08 Score=114.13 Aligned_cols=130 Identities=21% Similarity=0.287 Sum_probs=107.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC
Q 005473 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639 (695)
Q Consensus 560 ~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh 639 (695)
-+-++++.-++++|+.-+.|.+|+...-+.-..+.+|.+.|.++.|+-+|+++++.|+|+++|+|++++.+....+..+|
T Consensus 138 ~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH 217 (967)
T KOG0974|consen 138 IIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH 217 (967)
T ss_pred EEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc
Confidence 34456677789999999999999987433333688999999999999999999999999999999999987755577899
Q ss_pred CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC-CcEEEEEEeCC
Q 005473 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF-ESFVSVRVVQP 694 (695)
Q Consensus 640 ~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~-~~VtsVaf~sP 694 (695)
+..|+.++|+|+ .+++++.|-+.++|+.. ++.+.++.+|. ..|..++. ++
T Consensus 218 saRvw~~~~~~n---~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~-~~ 268 (967)
T KOG0974|consen 218 SARVWACCFLPN---RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAV-PI 268 (967)
T ss_pred cceeEEEEeccc---eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEE-cC
Confidence 999999999998 56799999999999765 55566888775 46677776 54
No 227
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.88 E-value=2.6e-08 Score=113.47 Aligned_cols=124 Identities=18% Similarity=0.249 Sum_probs=99.7
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEE
Q 005473 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWD 625 (695)
Q Consensus 548 v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~-t~~~~~~l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWD 625 (695)
......|.++|+++.++|-+..++..+.|-+|+||... ...++..+..+...|++++|||. ...|+++..||.|.+||
T Consensus 391 ~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 391 HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 34556788999999999988766666669999999987 66778788888889999999996 45778888899999999
Q ss_pred CCCCC-eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473 626 TENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 626 l~t~~-~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t 672 (695)
+.... .++....-+....+.+.|++.|+ +++.|+..|.|++|++..
T Consensus 471 Ll~~~~~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 471 LLQDDEEPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSE 517 (555)
T ss_pred hhccccCCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence 96432 34444444456667788888887 788999999999999964
No 228
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.87 E-value=1.2e-07 Score=98.18 Aligned_cols=105 Identities=21% Similarity=0.315 Sum_probs=85.7
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCeE--EEEecccCCCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCCeeEEEEecC--
Q 005473 566 DGKLLATGG-HDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRT-VRVWDTENPDYSLRTFTGH-- 639 (695)
Q Consensus 566 dg~~LaSgs-~Dg~V~IWDl~t~~~--~~~l~~H~~~V~~v~~spdg~~LaTgs~Dgt-IrvWDl~t~~~~l~~~~gh-- 639 (695)
+..+||.-| .-|.|.|-|+...+. ...+.+|.+.|.||+.+-+|.+|||+|..|+ |||||..++.. +..++.-
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-l~E~RRG~d 225 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-LQELRRGVD 225 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-eeeeecCCc
Confidence 344555544 468999999976554 4678999999999999999999999999998 89999999876 5555432
Q ss_pred CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 640 ~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t 672 (695)
...|.+++|+|+.. +||++++.|+|+||.++.
T Consensus 226 ~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 226 RADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred hheEEEEEeCCCcc-EEEEEcCCCeEEEEEeec
Confidence 25699999999988 677888899999999875
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=8.8e-08 Score=101.42 Aligned_cols=176 Identities=18% Similarity=0.281 Sum_probs=133.8
Q ss_pred cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCC--Cc
Q 005473 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHD--KK 578 (695)
Q Consensus 502 l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~-~LaSgs~D--g~ 578 (695)
+.-.+.++.+|-.+|.+.+|....+... . .+...+..+ ..+..+.-++... .+++||.. ..
T Consensus 111 l~~~dg~Litc~~sG~l~~~~~k~~d~h------------s---s~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~ 174 (412)
T KOG3881|consen 111 LKLADGTLITCVSSGNLQVRHDKSGDLH------------S---SKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINE 174 (412)
T ss_pred hhhcCCEEEEEecCCcEEEEeccCCccc------------c---ccceeeecC-CceeeeccCCCCCceEecCchhcccc
Confidence 4455678888899999999955332100 1 111222222 3366666666555 45558877 88
Q ss_pred EEEEECCCCeEEEEecc---------cCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEE
Q 005473 579 AVLWCTESFTVKSTLEE---------HTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (695)
Q Consensus 579 V~IWDl~t~~~~~~l~~---------H~~~V~~v~~spd--g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~ 647 (695)
+.|||+...+.+..-+. -.-+++++.|-+. ...|||+..-+.||+||++..+.++..|.-.+..|+++.
T Consensus 175 lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~ 254 (412)
T KOG3881|consen 175 LKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG 254 (412)
T ss_pred eeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeee
Confidence 99999998755443221 1245778999886 788999999999999999999999999988888999999
Q ss_pred EecCCCeEEEEEeCCCcEEEEECCCCeEEEE-EecCCCcEEEEEEeCCC
Q 005473 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKNFFESFVSVRVVQPR 695 (695)
Q Consensus 648 fspdg~~llaSgs~Dg~IriWDl~tg~~v~~-~~~h~~~VtsVaf~sPd 695 (695)
..|++. ++++|..-|.+..||++.++.+.. +++.++.|++|.. ||.
T Consensus 255 l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~-hp~ 301 (412)
T KOG3881|consen 255 LTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHC-HPT 301 (412)
T ss_pred ecCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEE-cCC
Confidence 999998 566999999999999999998877 8899999999998 884
No 230
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.84 E-value=1.9e-07 Score=103.90 Aligned_cols=198 Identities=15% Similarity=0.202 Sum_probs=134.0
Q ss_pred CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCC---CccccccccC---------CCce
Q 005473 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPR---DRVGRSAEVG---------KGFT 544 (695)
Q Consensus 477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~---~~~~~~~d~~---------~~~~ 544 (695)
.+.+.+.++.|+.+| ..+++|+.|..|-+|...-.+-.+ .....+.... .-..
T Consensus 51 gHKDtVycVAys~dG---------------krFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsd 115 (1081)
T KOG1538|consen 51 GHKDTVYCVAYAKDG---------------KRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSD 115 (1081)
T ss_pred cccceEEEEEEccCC---------------ceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhh
Confidence 455667777777777 567999999999999653322110 0001000000 0000
Q ss_pred ---e-eeEEEecC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cccCCCeEEEEEcCCC-----C
Q 005473 545 ---F-TEFQLIPA--STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSL-----S 610 (695)
Q Consensus 545 ---~-~~v~~l~~--H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l---~~H~~~V~~v~~spdg-----~ 610 (695)
| ..-+.+.. ....|.||+|..||.+|+.|-.||+|.|-+-. ++....+ .|...+|++|+|+|.. .
T Consensus 116 FglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~d 194 (1081)
T KOG1538|consen 116 FGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRND 194 (1081)
T ss_pred ccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccc
Confidence 0 00011111 23458899999999999999999999998754 4443344 3467899999999953 3
Q ss_pred EEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEE
Q 005473 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVR 690 (695)
Q Consensus 611 ~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVa 690 (695)
.+++.....++.+|.+.. .. +..-....-...|+.+.++|.+++ .|+.|+.+++|- +.|-.+.++.....+|++|+
T Consensus 195 i~aV~DW~qTLSFy~LsG-~~-Igk~r~L~FdP~CisYf~NGEy~L-iGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~ 270 (1081)
T KOG1538|consen 195 ILAVADWGQTLSFYQLSG-KQ-IGKDRALNFDPCCISYFTNGEYIL-LGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQ 270 (1081)
T ss_pred eEEEEeccceeEEEEecc-ee-ecccccCCCCchhheeccCCcEEE-EccCCCceEEEe-ecCeEEeeccccceeEEEEE
Confidence 678888888999988874 32 222223334567899999999655 777799999997 66888888888889999999
Q ss_pred EeCCC
Q 005473 691 VVQPR 695 (695)
Q Consensus 691 f~sPd 695 (695)
. +|+
T Consensus 271 ~-~PN 274 (1081)
T KOG1538|consen 271 A-KPN 274 (1081)
T ss_pred E-ccC
Confidence 8 986
No 231
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.82 E-value=3.1e-07 Score=95.16 Aligned_cols=80 Identities=26% Similarity=0.323 Sum_probs=72.7
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCeEEEEecc--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473 549 QLIPASTSKVESCHFSPDGKLLATGGHDKK-AVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (695)
Q Consensus 549 ~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~-V~IWDl~t~~~~~~l~~--H~~~V~~v~~spdg~~LaTgs~DgtIrvWD 625 (695)
..+.+|.+.|.|++.+.+|.+||||+..|+ |||||..+++.+..++. ....|+||+|+|+..+|+++|+.|+|+||.
T Consensus 175 ~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 175 SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 567899999999999999999999999887 78999999999988853 246799999999999999999999999998
Q ss_pred CCC
Q 005473 626 TEN 628 (695)
Q Consensus 626 l~t 628 (695)
++.
T Consensus 255 l~~ 257 (346)
T KOG2111|consen 255 LRD 257 (346)
T ss_pred eec
Confidence 875
No 232
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.81 E-value=1.2e-08 Score=109.75 Aligned_cols=165 Identities=16% Similarity=0.241 Sum_probs=118.4
Q ss_pred CceEEEEecCCC--cccc----ccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 005473 481 SKSLLMFGSDGM--GSLT----SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (695)
Q Consensus 481 ~~s~l~~~~dg~--~~la----~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H 554 (695)
-+.+..|...|+ .|+. +..-.|.+..-++++++..|.++.-++..+ ..+..+...
T Consensus 190 K~y~yvYD~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G-------------------klVa~~~t~ 250 (545)
T KOG1272|consen 190 KKYVYVYDNNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTG-------------------KLVASIRTG 250 (545)
T ss_pred hceEEEecCCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechh-------------------hhhHHHHcc
Confidence 445566666665 2221 111123444455666766666666544333 233444555
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (695)
Q Consensus 555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~ 634 (695)
.+.+..++-+|-+-.+-+|...|+|.+|.-...+++..+-.|.++|.+|++.++|.+++|++.|..|+|||++.... +.
T Consensus 251 ~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q-l~ 329 (545)
T KOG1272|consen 251 AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ-LH 329 (545)
T ss_pred CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc-cc
Confidence 66788888999888999999999999999998888888888999999999999999999999999999999998664 44
Q ss_pred EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 005473 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (695)
Q Consensus 635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWD 669 (695)
++.. ...+..++|+..| +| +++....|.||.
T Consensus 330 t~~t-p~~a~~ls~Sqkg--lL-A~~~G~~v~iw~ 360 (545)
T KOG1272|consen 330 TYRT-PHPASNLSLSQKG--LL-ALSYGDHVQIWK 360 (545)
T ss_pred eeec-CCCcccccccccc--ce-eeecCCeeeeeh
Confidence 4333 3457788888765 45 344456799995
No 233
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.7e-08 Score=107.70 Aligned_cols=134 Identities=27% Similarity=0.274 Sum_probs=96.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 005473 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (695)
Q Consensus 559 ~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g 638 (695)
.+++|+.+|..|++|+.||++|||+......+.....|...|.++.|+|||.+|++-+.| ..+|||++++. ++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~-~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA-ALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc-hhhhcCC
Confidence 789999999999999999999999998888888888899999999999999999999999 89999999874 3544431
Q ss_pred --CCCCeEEEEEecCC---Ce-EEEEEeCCCcEEEEECCCCe---EEE--EEecCCCcEEEEEEeCCC
Q 005473 639 --HSTTVMSLDFHPSK---ED-LLCSCDNNSEIRYWSINNGS---CAG--VFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 639 --h~~~V~sl~fspdg---~~-llaSgs~Dg~IriWDl~tg~---~v~--~~~~h~~~VtsVaf~sPd 695 (695)
-......+.|..|+ .. +++.-..-+.|+.||+..-. .++ ....-...|++++. +++
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V-S~d 292 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV-SDD 292 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE-cCC
Confidence 22234566677664 22 23333345667777764321 111 11122346777877 654
No 234
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.78 E-value=3.4e-07 Score=101.67 Aligned_cols=141 Identities=19% Similarity=0.171 Sum_probs=100.5
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEE-EeCCC--eEEE
Q 005473 550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR--TVRV 623 (695)
Q Consensus 550 ~l~~H~~~V~~v~fspdg~~LaSgs~D---g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaT-gs~Dg--tIrv 623 (695)
.+..+...+.+.+|+|||++|+.++.+ ..|++||+.+++... +..+.+.+.+++|+|+++.|+. .+.++ .|++
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV 262 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence 344566678999999999999887654 479999998876543 3345667778999999987754 44444 5999
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 624 WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
||+.++. ...+..+...+....|+|||+.+++++..++ .|++||+.+++.. .+..+...+..++| +|+
T Consensus 263 ~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~-spd 332 (417)
T TIGR02800 263 MDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSW-SPD 332 (417)
T ss_pred EECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEE-CCC
Confidence 9998754 3445555555667899999998776665544 5888888776643 34444455677788 775
No 235
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.77 E-value=5e-07 Score=101.40 Aligned_cols=137 Identities=20% Similarity=0.127 Sum_probs=88.4
Q ss_pred CeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCC---eEEEEecccCCCeEEEEEcCCCCEEEEEe-CCCeEEEE--E
Q 005473 557 KVESCHFSPDGKLLATGGH-----DKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW--D 625 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs~-----Dg~V~IWDl~t~---~~~~~l~~H~~~V~~v~~spdg~~LaTgs-~DgtIrvW--D 625 (695)
.....+|+|||+.|+..+. |..+.+||+.++ .......++.+.+...+|+|||+.|+..+ .+|...|| +
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 3456899999998876553 233445777652 33333333334556789999999877665 46655555 5
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D--g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+.........+..+...+....|+|||+.+++++..+ ..|.+||+.++++.... .....+..+.| +||
T Consensus 312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~w-SpD 381 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSW-AID 381 (428)
T ss_pred CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEE-CCC
Confidence 5422222444555556778899999999877766544 36999999988765433 23345567888 875
No 236
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.77 E-value=3.7e-07 Score=102.41 Aligned_cols=134 Identities=17% Similarity=0.105 Sum_probs=93.7
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEE--CCC-CeEEEEecccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCC
Q 005473 557 KVESCHFSPDGKLLATGG-HDKKAVLWC--TES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENP 629 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs-~Dg~V~IWD--l~t-~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D---gtIrvWDl~t~ 629 (695)
.+...+|+|||+.|+..+ .+|...||. +.. +.....+..+...+....|+|||+.|+..+.+ ..|++||+.++
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 346789999999777665 467655654 432 23344555555677899999999988776543 36999999887
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCeEEEEEeC--CCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 630 ~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~--Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
+. ..+......+.+..|+|||+.+++++.. +..|++||+..++...... ..+.+...+| +|
T Consensus 362 ~~--~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~W-s~ 424 (428)
T PRK01029 362 RD--YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRFPSW-GA 424 (428)
T ss_pred Ce--EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCcccCcee-cC
Confidence 64 3444334467889999999988776654 3578899998877655443 4455677888 77
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=7.6e-08 Score=105.87 Aligned_cols=139 Identities=17% Similarity=0.271 Sum_probs=108.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec------ccCCC-----eEEEEEcCCCCEEEEEeCCCeE
Q 005473 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQW-----ITDVRFSPSLSRLATSSADRTV 621 (695)
Q Consensus 553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~------~H~~~-----V~~v~~spdg~~LaTgs~DgtI 621 (695)
...+.|++|..++...+|++|+.||.|-.||.++...+.++. .|.+. |+++.|+.+|-.+++|..+|.|
T Consensus 173 ~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v 252 (703)
T KOG2321|consen 173 TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSV 252 (703)
T ss_pred cccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcE
Confidence 345779999999999999999999999999998876665553 23333 9999999999999999999999
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 622 rvWDl~t~~~~l~~~~gh~~~V~sl~fspdg-~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
.|||+++.+..+..-.+..-.|..++|.+.+ ...+++++ ...++|||-.+|+....+.... .|..++| -|
T Consensus 253 ~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~-~lND~C~-~p 323 (703)
T KOG2321|consen 253 LIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTS-DLNDFCF-VP 323 (703)
T ss_pred EEEEcccCCceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccccC-CcCceee-ec
Confidence 9999999776444444445678999997652 23555655 6899999999999988886544 3677776 44
No 238
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=4.2e-07 Score=100.12 Aligned_cols=132 Identities=14% Similarity=0.140 Sum_probs=102.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe--
Q 005473 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-- 637 (695)
Q Consensus 560 ~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~-- 637 (695)
.++++.-..-|++++....|+-++++.|..+.-+....+.+++|..++...+|++|+.||.|-+||.++... +.++.
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr-v~~l~~~ 216 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR-VGTLDAA 216 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh-heeeecc
Confidence 455554444456666667788889999999999988889999999999999999999999999999998654 33322
Q ss_pred ----cCCC-----CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cCCCcEEEEEEeCC
Q 005473 638 ----GHST-----TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-NFFESFVSVRVVQP 694 (695)
Q Consensus 638 ----gh~~-----~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~h~~~VtsVaf~sP 694 (695)
.|.+ .|+++.|+.+|= -++.|+.+|.|.|||+++.+++..-. +..-+|..+.| .+
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~-~~ 281 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDW-QD 281 (703)
T ss_pred cccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCceeecccCCccceeeecc-cc
Confidence 2333 399999998864 67799999999999999988776543 34557777777 44
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=9.8e-07 Score=98.83 Aligned_cols=141 Identities=19% Similarity=0.171 Sum_probs=97.1
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEE-EEeCCC--eEEE
Q 005473 550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVRV 623 (695)
Q Consensus 550 ~l~~H~~~V~~v~fspdg~~LaSgs~D---g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~La-Tgs~Dg--tIrv 623 (695)
.+..+...+....|+|||+.|+..+.+ ..|++||+.+++... +....+.+...+|+|+|+.|+ +.+.++ .|++
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 344566778999999999988776643 368999998876543 333345566799999999876 444455 5888
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 624 WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
||++++. +..+..+...+....|+|||+.+++++..+| .|++||+.+++....... .......+| +||
T Consensus 272 ~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~-Spd 341 (430)
T PRK00178 272 MDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRL-SAD 341 (430)
T ss_pred EECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEE-CCC
Confidence 8998765 3445556666778899999998887766554 577778877765433221 122234566 664
No 240
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.68 E-value=1.5e-06 Score=97.34 Aligned_cols=134 Identities=16% Similarity=0.106 Sum_probs=87.9
Q ss_pred CCeEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCC
Q 005473 556 SKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENP 629 (695)
Q Consensus 556 ~~V~~v~fspdg~~La-Sgs~Dg--~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-Dg--tIrvWDl~t~ 629 (695)
+.+.+..|+|||+.|+ +...++ .|++||+.+++.. .+..+...+....|+|+++.|+..+. ++ .|++||+.++
T Consensus 243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 3455789999999776 444455 5888899887654 45556666778899999998766553 33 5888888776
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 630 ~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
.....++.+ .......|+|+|+.++++...++ .|.+||+.+++....... .......| +||
T Consensus 322 ~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~-spd 384 (430)
T PRK00178 322 RAERVTFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSV-APN 384 (430)
T ss_pred CEEEeecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceE-CCC
Confidence 532222222 33456789999998777665454 588899988764332222 12234567 765
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.67 E-value=1.5e-06 Score=96.55 Aligned_cols=137 Identities=18% Similarity=0.172 Sum_probs=89.9
Q ss_pred CCCCCeEEEEEcCCCCEEEE-EeCCC--cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEEC
Q 005473 553 ASTSKVESCHFSPDGKLLAT-GGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDT 626 (695)
Q Consensus 553 ~H~~~V~~v~fspdg~~LaS-gs~Dg--~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-Dg--tIrvWDl 626 (695)
.+.+.+.+++|+|||+.|+. .+.++ .|++||+.++... .+..+...+....|+|+++.|+.++. ++ .|++||+
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 34455778999999997654 44444 5888999876543 44445555667899999998876654 33 5888888
Q ss_pred CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 627 ~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
.+++. ..+..+...+..+.|+|+|+.++++...++ .|.+||+.++... .+..+ ..+...+| +|+
T Consensus 310 ~~~~~--~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~-spd 375 (417)
T TIGR02800 310 DGGEV--RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSF-APN 375 (417)
T ss_pred CCCCE--EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceE-CCC
Confidence 86553 344445567788999999986665544322 7889998876443 23222 12234456 654
No 242
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=8.2e-08 Score=103.95 Aligned_cols=149 Identities=23% Similarity=0.330 Sum_probs=121.9
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cccCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 005473 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVR 622 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l-~~H~~~V~~v~~sp--dg~~LaTgs~DgtIr 622 (695)
.....|..|.+.|..|.|+..|..|++|+.|..|.+||...+..+..+ .+|...|..-.|.| +...+++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 344567889999999999999999999999999999999888877666 67998999889988 356799999999999
Q ss_pred EEECCCCCeeE--EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe---cCCC---cEEEEEEeCC
Q 005473 623 VWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---NFFE---SFVSVRVVQP 694 (695)
Q Consensus 623 vWDl~t~~~~l--~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~---~h~~---~VtsVaf~sP 694 (695)
+=.+...+.+. +.+..|.+.|..++..|+.++-|.+|+.|+.|.-+|++.+.+...+. .+.. ...+|+. +|
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~-~P 291 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV-DP 291 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec-CC
Confidence 99887655543 45667999999999999999999999999999999999875543333 3333 4466776 66
Q ss_pred C
Q 005473 695 R 695 (695)
Q Consensus 695 d 695 (695)
.
T Consensus 292 ~ 292 (559)
T KOG1334|consen 292 R 292 (559)
T ss_pred C
Confidence 3
No 243
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=4.5e-08 Score=102.11 Aligned_cols=135 Identities=17% Similarity=0.226 Sum_probs=105.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----eEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 005473 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN 628 (695)
Q Consensus 555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~-----~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t 628 (695)
++.|.++.|...+.+++.|+..|.|.++|+++. .+...+ .|.+.|+++..-. ++.+|++++.+|+|++||++.
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 455889999988999999999999999999864 344444 4899999998766 678999999999999999986
Q ss_pred CCe--eEEEEecCCCCeEEEEE--ecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe----cCCCcEEEEEE
Q 005473 629 PDY--SLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----NFFESFVSVRV 691 (695)
Q Consensus 629 ~~~--~l~~~~gh~~~V~sl~f--spdg~~llaSgs~Dg~IriWDl~tg~~v~~~~----~h~~~VtsVaf 691 (695)
.+. .+..+.||...-.-+-+ ++... ++++++.|...|||.++.|..+.+++ .....+.+++|
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~ 400 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAF 400 (425)
T ss_pred hhcccceeeeecccccccccccccccccc-eEEEccCeeEEEEEecccCceeeccCCCCccccccccceeh
Confidence 441 27888998765444444 34444 67789999999999999999888877 33446677777
No 244
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=7.7e-07 Score=102.41 Aligned_cols=158 Identities=16% Similarity=0.279 Sum_probs=119.6
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~ 585 (695)
++++++|..||.|.+|.-.... .+. .....+.=|.++|++++|+++|.+|+|||..|.+.+|.+.
T Consensus 217 ~~~~Aa~d~dGrI~vw~d~~~~------------~~~---~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 217 ERYLAAGDSDGRILVWRDFGSS------------DDS---ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred cceEEEeccCCcEEEEeccccc------------ccc---ccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 3899999999999999443210 011 1235567799999999999999999999999999999999
Q ss_pred CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eEEEEe--------cCCCCeEEEEEecCCCeE
Q 005473 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFT--------GHSTTVMSLDFHPSKEDL 655 (695)
Q Consensus 586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~--~l~~~~--------gh~~~V~sl~fspdg~~l 655 (695)
+++ ..-+..-.++|..+.++||+.+.+....|..|.+....+... .+..+. ...+-.+.++++|.-+ .
T Consensus 282 T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~-~ 359 (792)
T KOG1963|consen 282 TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN-S 359 (792)
T ss_pred CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC-c
Confidence 988 444555678999999999999999999999999988754321 111111 1234567888999533 5
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEe
Q 005473 656 LCSCDNNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 656 laSgs~Dg~IriWDl~tg~~v~~~~ 680 (695)
++-++..|.|.+||+-+.+.+..+.
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEE
Confidence 6678889999999998877665554
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=1.8e-06 Score=97.52 Aligned_cols=138 Identities=14% Similarity=0.061 Sum_probs=92.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEE
Q 005473 551 IPASTSKVESCHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVW 624 (695)
Q Consensus 551 l~~H~~~V~~v~fspdg~~LaSgs~-Dg--~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-Dg--tIrvW 624 (695)
+..+...+...+|+|||+.|+..+. ++ .|+++|+.+++.... ..+.......+|+|+|++|+..+. ++ .|.++
T Consensus 301 lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~ 379 (448)
T PRK04792 301 ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQ 379 (448)
T ss_pred CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEEEEecCCceEEEEE
Confidence 3444455678899999998766553 44 466667777765432 222233456789999998877654 34 46667
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 625 Dl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~--IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
|+.++.. ..+... .......|+|||+.++++...++. |+++|. +|.....+..+.+.+...+| +|
T Consensus 380 dl~~g~~--~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~W-sp 446 (448)
T PRK04792 380 DLETGAM--QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAW-SP 446 (448)
T ss_pred ECCCCCe--EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCcc-CC
Confidence 8877653 333322 123356899999988887776654 777786 57777777777777888999 87
No 246
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.60 E-value=3.4e-07 Score=93.99 Aligned_cols=126 Identities=25% Similarity=0.292 Sum_probs=96.1
Q ss_pred eeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCeEEEE-ecccCCCeEEEEEcC-CCCEEEEEeCCCe
Q 005473 545 FTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE-SFTVKST-LEEHTQWITDVRFSP-SLSRLATSSADRT 620 (695)
Q Consensus 545 ~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~-t~~~~~~-l~~H~~~V~~v~~sp-dg~~LaTgs~Dgt 620 (695)
...+..+++|.-++..++|+. +.+++++|++|+.+.-||++ ..+.+.. .+-|+..|.+|.-+| .+.+|+||+.|-+
T Consensus 155 le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~ 234 (339)
T KOG0280|consen 155 LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC 234 (339)
T ss_pred eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc
Confidence 344557889999999999976 45699999999999999998 4455544 567899999999887 4779999999999
Q ss_pred EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCe-EEEEEeCCCcEEEEECCC
Q 005473 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 621 IrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~-llaSgs~Dg~IriWDl~t 672 (695)
|++||+|+...++..-. -.+.|+.+.++|.-.. ++++|-..| .+|-++..
T Consensus 235 i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~ 285 (339)
T KOG0280|consen 235 IRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD 285 (339)
T ss_pred eeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence 99999998776665433 2378999999996432 344444444 56666654
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=1.2e-06 Score=96.63 Aligned_cols=118 Identities=17% Similarity=0.258 Sum_probs=90.5
Q ss_pred CCCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCC
Q 005473 554 STSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTEN 628 (695)
Q Consensus 554 H~~~V~~v~fspdg~~LaSg--s~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D---gtIrvWDl~t 628 (695)
..++|.++.|+++++-++++ -.--+|.|||++ +.++..+ -.++-.++-|+|.|++|+.++++ |.|-|||+.+
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 36899999999999866554 346789999986 4566555 35677899999999999998875 6799999998
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC-----CCcEEEEECCCCeEEEE
Q 005473 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGV 678 (695)
Q Consensus 629 ~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~-----Dg~IriWDl~tg~~v~~ 678 (695)
.+ ++..+... ..+-++|+|||.+++.+.+. |..|+||++. |..+..
T Consensus 346 ~K-~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~ 396 (566)
T KOG2315|consen 346 RK-LIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHE 396 (566)
T ss_pred hh-hccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeeh
Confidence 44 57776653 45668999999977754443 7899999986 555543
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.59 E-value=1.2e-06 Score=98.88 Aligned_cols=140 Identities=20% Similarity=0.228 Sum_probs=94.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEE-EeCCCe--EEEE
Q 005473 551 IPASTSKVESCHFSPDGKLLATGGHD-K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRVW 624 (695)
Q Consensus 551 l~~H~~~V~~v~fspdg~~LaSgs~D-g--~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaT-gs~Dgt--IrvW 624 (695)
+..+...+.+..|+|||+.|+..+.+ + .|++||+.+++... +....+.....+|+|||+.|+. .+.++. |++|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 34556678999999999988776543 3 58888998876533 2222334557899999997764 566664 8888
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 625 Dl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~--IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
|+.++. +..+..+...+...+|+|||+.+++++..++. |+++|+.+++..... .+.......+| +||
T Consensus 292 dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~-SpD 360 (448)
T PRK04792 292 DIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSI-TPD 360 (448)
T ss_pred ECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeE-CCC
Confidence 988754 34555565667889999999988877765554 666677777644322 12222344677 775
No 249
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.59 E-value=6.5e-06 Score=90.59 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=107.7
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 005473 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (695)
Q Consensus 508 ~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~ 587 (695)
++++-..++.|.+.+... .+.+..+......-..+.|++||+++++++.||.|.++|+.+.
T Consensus 8 ~~V~~~~~~~v~viD~~t-------------------~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~ 68 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGAT-------------------NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG 68 (369)
T ss_dssp EEEEEGGGTEEEEEETTT--------------------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS
T ss_pred EEEEecCCCEEEEEECCC-------------------CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc
Confidence 345566678888885432 2345555554443345789999999999999999999999999
Q ss_pred eEEEEecccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeEEEEec-------CCCCeEEEEEecCCCeEEEEE
Q 005473 588 TVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSC 659 (695)
Q Consensus 588 ~~~~~l~~H~~~V~~v~~spdg~~LaTgs-~DgtIrvWDl~t~~~~l~~~~g-------h~~~V~sl~fspdg~~llaSg 659 (695)
+.+.++.. .....++++++||+++++++ .++.|.++|.++.+. ++.+.. ..+.+..+..+|.++.++++-
T Consensus 69 ~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 69 KVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp SEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred cEEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 99998875 34567899999999998776 589999999998664 555432 235688888888888777676
Q ss_pred eCCCcEEEEECCCCeEE--EEEecCCCcEEEEEEeCCC
Q 005473 660 DNNSEIRYWSINNGSCA--GVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 660 s~Dg~IriWDl~tg~~v--~~~~~h~~~VtsVaf~sPd 695 (695)
-+.+.|.+-|+...+.+ ..+.. ........| +|+
T Consensus 147 kd~~~I~vVdy~d~~~~~~~~i~~-g~~~~D~~~-dpd 182 (369)
T PF02239_consen 147 KDTGEIWVVDYSDPKNLKVTTIKV-GRFPHDGGF-DPD 182 (369)
T ss_dssp TTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE--TT
T ss_pred ccCCeEEEEEeccccccceeeecc-ccccccccc-Ccc
Confidence 66688888898765433 33332 223345555 553
No 250
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.56 E-value=3e-07 Score=111.61 Aligned_cols=153 Identities=25% Similarity=0.363 Sum_probs=119.5
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (695)
Q Consensus 504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD 583 (695)
+...+-.+|+.|+.|++|....+. ...+.++ +....|+.+.|+..|+.+..+..||.+.+|-
T Consensus 2218 p~~~~Yltgs~dgsv~~~~w~~~~----------------~v~~~rt--~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHGQ----------------QVVCFRT--AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred CCCceEEecCCCceEEEEeccCCC----------------eEEEeec--cCcchhhhhhhcccCCceeeeccCCceeecc
Confidence 345788999999999999654331 1111122 2237799999999999999999999999999
Q ss_pred CCCCeEEEEecccCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecCCCeEEEE
Q 005473 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (695)
Q Consensus 584 l~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs---~DgtIrvWDl~t~~--~~l~~~~gh~~~V~sl~fspdg~~llaS 658 (695)
+. .++......|.....+++|-. ..+++++ .++.+.+||.--.. .++. .+|.+.++++++-|... +|++
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q-llis 2353 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ-LLIS 2353 (2439)
T ss_pred cC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcce-EEEe
Confidence 87 566777788999999999974 6777764 47889999985433 2333 88999999999999977 7779
Q ss_pred EeCCCcEEEEECCCCeEEEEEe
Q 005473 659 CDNNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 659 gs~Dg~IriWDl~tg~~v~~~~ 680 (695)
|+.+|.|++||++..+.++.+.
T Consensus 2354 ggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred cCCcCcEEEeehHHHHHHHHhh
Confidence 9999999999999777666554
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.56 E-value=1.5e-05 Score=87.80 Aligned_cols=154 Identities=14% Similarity=0.161 Sum_probs=108.1
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE 585 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~ 585 (695)
+++..++.|+.|.+++.... +.+..++.... ..++++++||+++++++ .++.|.|+|.+
T Consensus 49 r~~yv~~rdg~vsviD~~~~-------------------~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 49 RYLYVANRDGTVSVIDLATG-------------------KVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp SEEEEEETTSEEEEEETTSS-------------------SEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCcc-------------------cEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccc
Confidence 67777788999999966433 24445554443 58899999999998876 58999999999
Q ss_pred CCeEEEEeccc-------CCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEE
Q 005473 586 SFTVKSTLEEH-------TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (695)
Q Consensus 586 t~~~~~~l~~H-------~~~V~~v~~spdg~~LaTgs~-DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~lla 657 (695)
+.+.+..+... ...+..|..+|....++..-. .+.|.+.|....+.................|+|+++++++
T Consensus 109 tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 109 TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLV 188 (369)
T ss_dssp T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred cccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeee
Confidence 99999887532 346778888888776665555 4788888987765434344444566788999999998888
Q ss_pred EEeCCCcEEEEECCCCeEEEEEe
Q 005473 658 SCDNNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 658 Sgs~Dg~IriWDl~tg~~v~~~~ 680 (695)
+...+..|-++|..+++.+..+.
T Consensus 189 a~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 189 AANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEE
T ss_pred cccccceeEEEeeccceEEEEee
Confidence 88888899999999998887665
No 252
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.54 E-value=3.2e-07 Score=95.23 Aligned_cols=131 Identities=17% Similarity=0.304 Sum_probs=103.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeEEEEec
Q 005473 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTG 638 (695)
Q Consensus 560 ~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTg-s~DgtIrvWDl~t~~~~l~~~~g 638 (695)
-|+|||+|++||+++.- .+.|-|..+.+....+.- -..|.-|.|..|..+++++ ..|+.|.+|++..++. ...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEecc
Confidence 58899999999999855 788999887665433322 4567788999888777665 6788999999998776 444555
Q ss_pred CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 639 h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
....+.+++|+|||++++.+..-|-.|.||.+.+.++.. ++..+..+..++| |||
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f-~~d 144 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAF-HPD 144 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEE-CCC
Confidence 567799999999999999999999999999999876554 3344455688888 886
No 253
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.53 E-value=5.9e-07 Score=95.69 Aligned_cols=85 Identities=22% Similarity=0.350 Sum_probs=72.8
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005473 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (695)
Q Consensus 550 ~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l-~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t 628 (695)
.+-||-..|+.|+|+||+++|+++..|..|||-.......+..+ -||+..|..+++-++ ..|++||.|++|++||+++
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence 34689999999999999999999999999999888766666665 579999999999765 5689999999999999999
Q ss_pred CCeeEEEE
Q 005473 629 PDYSLRTF 636 (695)
Q Consensus 629 ~~~~l~~~ 636 (695)
++. +.++
T Consensus 225 gk~-L~t~ 231 (390)
T KOG3914|consen 225 GKL-LDTC 231 (390)
T ss_pred CCc-cccc
Confidence 875 4443
No 254
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.52 E-value=7e-07 Score=93.37 Aligned_cols=83 Identities=17% Similarity=0.381 Sum_probs=74.0
Q ss_pred eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 005473 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (695)
Q Consensus 545 ~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~-~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrv 623 (695)
...+.++.+|.+.|+|++|.+..++|++|..|..|.+||+...+ ....+.+|...|..+.+.+.-..+++++.||.|-+
T Consensus 187 ~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 187 CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 35678899999999999999999999999999999999996544 34567899999999999888889999999999999
Q ss_pred EECC
Q 005473 624 WDTE 627 (695)
Q Consensus 624 WDl~ 627 (695)
||++
T Consensus 267 w~mn 270 (404)
T KOG1409|consen 267 WNMN 270 (404)
T ss_pred Eecc
Confidence 9986
No 255
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.47 E-value=1.4e-06 Score=103.07 Aligned_cols=148 Identities=18% Similarity=0.219 Sum_probs=105.4
Q ss_pred eeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-------eEEEEecccCCCeEEEEEcCCCCEEEEEeC
Q 005473 546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fspdg-~~LaSgs~Dg~V~IWDl~t~-------~~~~~l~~H~~~V~~v~~spdg~~LaTgs~ 617 (695)
..+..+..|...|..++.+++. .+++||+.||+|+|||++.. +...++....+.+.++.+.+.+..+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 5677788899999999987765 89999999999999998642 233344434688999999999999999999
Q ss_pred CCeEEEEECCCC--Ce----eEEEEecCC-CCeEEE-EEecC-CCeEEEEEeCCCcEEEEECCCCeEEEEEe--cCCCcE
Q 005473 618 DRTVRVWDTENP--DY----SLRTFTGHS-TTVMSL-DFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFK--NFFESF 686 (695)
Q Consensus 618 DgtIrvWDl~t~--~~----~l~~~~gh~-~~V~sl-~fspd-g~~llaSgs~Dg~IriWDl~tg~~v~~~~--~h~~~V 686 (695)
||.|++.+++.- .. +.+....+. +.|.++ +|... +..+++.+..-+.|..||++...-+..++ .-.+-|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 999999999752 11 112222222 233333 34332 33477788889999999999766554444 334677
Q ss_pred EEEEEeCC
Q 005473 687 VSVRVVQP 694 (695)
Q Consensus 687 tsVaf~sP 694 (695)
++++. +|
T Consensus 1199 TSi~i-dp 1205 (1431)
T KOG1240|consen 1199 TSIVI-DP 1205 (1431)
T ss_pred eEEEe-cC
Confidence 88876 65
No 256
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.41 E-value=6.2e-07 Score=90.73 Aligned_cols=149 Identities=17% Similarity=0.330 Sum_probs=97.8
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC-CCCCeEEEEEcCCCCEEEEEeC-----CCc
Q 005473 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGH-----DKK 578 (695)
Q Consensus 505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~-H~~~V~~v~fspdg~~LaSgs~-----Dg~ 578 (695)
...-++++..|+.+.++...... .. ...+.. |.+ -.+.++...+++|.++.. -+.
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~-------~~-----------~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDL-------AL-----------MSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDN 160 (319)
T ss_pred cCCceEecCCCceEEEEechHHH-------hh-----------hhhccccccc-ccccceeecccEEecCCcceEeeccc
Confidence 34567888899999888543210 00 000111 111 122223334444444331 133
Q ss_pred EEEEECCCCeEEEEecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEE
Q 005473 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (695)
Q Consensus 579 V~IWDl~t~~~~~~l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~lla 657 (695)
.++|+++..+.+..-.--...|++++-+|. ..++++|+.||.|-+||.+....++..+..|+..++-|-|||..+.-|+
T Consensus 161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence 556666543322211112344999999995 5577888999999999999988888889999999999999998777777
Q ss_pred EEeCCCcEEEEECCC
Q 005473 658 SCDNNSEIRYWSINN 672 (695)
Q Consensus 658 Sgs~Dg~IriWDl~t 672 (695)
+|++||.+..||..+
T Consensus 241 t~sedGslw~wdas~ 255 (319)
T KOG4714|consen 241 TCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCcEEEEcCCC
Confidence 999999999999764
No 257
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.40 E-value=1.9e-05 Score=80.52 Aligned_cols=180 Identities=11% Similarity=0.061 Sum_probs=117.6
Q ss_pred ccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEE
Q 005473 495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATG 573 (695)
Q Consensus 495 la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd-g~~LaSg 573 (695)
+.+.+..+-....+++.|+..+...+|....... ....-..|...|+-+.=.-| .--+..+
T Consensus 73 ~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~------------------h~~~cd~snn~v~~~~r~cd~~~~~~i~ 134 (344)
T KOG4532|consen 73 MTFTPGSFINKCVTLADGGASGQFDLFACNTNDG------------------HLYQCDVSNNDVTLVKRYCDLKFPLNIA 134 (344)
T ss_pred ccccchHhhccccEEEeccccceeeeecccCccc------------------ceeeecccccchhhhhhhcccccceeec
Confidence 4444555556667899999999999995543210 11111112221221111111 1246677
Q ss_pred eCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eEE-EEecCCCCeEEEEEecC
Q 005473 574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLR-TFTGHSTTVMSLDFHPS 651 (695)
Q Consensus 574 s~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~-~l~-~~~gh~~~V~sl~fspd 651 (695)
+.|.++++.+++.+.....+.-..-.+.+++++++++++++.++...|..|.++...+ .++ .....++.-.+..|+..
T Consensus 135 sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~ 214 (344)
T KOG4532|consen 135 SNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN 214 (344)
T ss_pred cCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence 8899999988865444333321112388999999999999999999999999976543 334 33344566788999987
Q ss_pred CCeEEEEEeCCCcEEEEECCCC-eEEEEE----ecCCCcEEEEEEeCC
Q 005473 652 KEDLLCSCDNNSEIRYWSINNG-SCAGVF----KNFFESFVSVRVVQP 694 (695)
Q Consensus 652 g~~llaSgs~Dg~IriWDl~tg-~~v~~~----~~h~~~VtsVaf~sP 694 (695)
.. .+|++..||++.|||++.- .+.... ..|.+.|..+.| +|
T Consensus 215 ~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~F-sl 260 (344)
T KOG4532|consen 215 DL-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRF-SL 260 (344)
T ss_pred cc-eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEe-cC
Confidence 55 8889999999999999863 333322 268899999999 75
No 258
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.39 E-value=5.5e-06 Score=86.81 Aligned_cols=150 Identities=23% Similarity=0.370 Sum_probs=107.2
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-- 584 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl-- 584 (695)
+.+.+|=..+++.-+....+ .......+....|...|..+.|+..-+++++++.|+.+.-...
T Consensus 81 ~~L~vg~~ngtvtefs~sed---------------fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 81 RRLYVGQDNGTVTEFALSED---------------FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred eEEEEEEecceEEEEEhhhh---------------hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence 45566666666666633211 1222344555567777777777766666666666654432211
Q ss_pred ---------------------------------------CCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473 585 ---------------------------------------ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (695)
Q Consensus 585 ---------------------------------------~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD 625 (695)
....++.++.+|.+.|++++|.+...+|++|..|..|.+||
T Consensus 146 ~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wd 225 (404)
T KOG1409|consen 146 GNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWD 225 (404)
T ss_pred CCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEe
Confidence 12334567789999999999999999999999999999999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t 672 (695)
+.-.+.......+|...|..+...+.-. .+++++.||.|.+||++.
T Consensus 226 igg~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 226 IGGRKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ccCCcceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccc
Confidence 9876665678889999999988776655 566999999999999974
No 259
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.39 E-value=9.2e-07 Score=64.21 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=37.1
Q ss_pred CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (695)
Q Consensus 587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD 625 (695)
++++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999998
No 260
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.38 E-value=4.1e-07 Score=61.20 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHhhc
Q 005473 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36 (695)
Q Consensus 10 ~~L~~yIydyl~k~~~~~tA~af~~e~ 36 (695)
+.||.+|||||+++||.+||++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 479999999999999999999999985
No 261
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.37 E-value=0.00019 Score=78.26 Aligned_cols=135 Identities=16% Similarity=0.198 Sum_probs=92.9
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCcEEEEECC--CCeE--EEEecc----c--CCCeEEEEEcCCCCEEEEEeC-CCeEEEE
Q 005473 557 KVESCHFSPDGKLLATGGH-DKKAVLWCTE--SFTV--KSTLEE----H--TQWITDVRFSPSLSRLATSSA-DRTVRVW 624 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs~-Dg~V~IWDl~--t~~~--~~~l~~----H--~~~V~~v~~spdg~~LaTgs~-DgtIrvW 624 (695)
.-..++|+|+++++++..+ +++|.+|++. ++.. +..+.. . ......|+++||+++|+++.. +.+|.+|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVF 272 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEE
Confidence 4688999999998877664 7889999987 4432 222211 1 125789999999999877764 6789999
Q ss_pred ECCC--CCe-eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC--CCCeEEEEEe-cCCCcEEEEEE
Q 005473 625 DTEN--PDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFK-NFFESFVSVRV 691 (695)
Q Consensus 625 Dl~t--~~~-~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl--~tg~~v~~~~-~h~~~VtsVaf 691 (695)
+++. +.. .+..+.........+.|+|+|+++++++-.++.|.+|++ .+|.....-. ......+||.|
T Consensus 273 ~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 9943 232 223333334558999999999999988888999999977 4676555443 33455678877
No 262
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.35 E-value=3.4e-06 Score=88.32 Aligned_cols=128 Identities=20% Similarity=0.288 Sum_probs=94.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEeccc-----CCCeEEEEEcCC-CCEEEEEeCCCeEEE
Q 005473 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEH-----TQWITDVRFSPS-LSRLATSSADRTVRV 623 (695)
Q Consensus 553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~---~~~~l~~H-----~~~V~~v~~spd-g~~LaTgs~DgtIrv 623 (695)
+|+.-|+++.++.|+..++++. |-.|.+|+++-.. .+..++.+ +..|++..|+|. ...++-++..|+||+
T Consensus 162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 6888999999999999998876 8889999985322 22233333 456899999995 557788888999999
Q ss_pred EECCCCCeeEE---------------EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC-CCCeEEEEEecCC
Q 005473 624 WDTENPDYSLR---------------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAGVFKNFF 683 (695)
Q Consensus 624 WDl~t~~~~l~---------------~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl-~tg~~v~~~~~h~ 683 (695)
-|++....|.. .|.+--+.|..+.|+++|++++ +-+ =-+|++||+ ...+++.++..|.
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-sRD-yltvk~wD~nme~~pv~t~~vh~ 314 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SRD-YLTVKLWDLNMEAKPVETYPVHE 314 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Eec-cceeEEEeccccCCcceEEeehH
Confidence 99995443321 1222235688999999999555 554 268999999 5677888887774
No 263
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=2e-06 Score=94.10 Aligned_cols=159 Identities=16% Similarity=0.165 Sum_probs=112.6
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
+-+++++.|.+|++|......++.. +..+-.++..|+.+|.++.|-.+.++++++ ||.|.+||---
T Consensus 748 NSFiSASkDKTVKLWSik~EgD~~~------------tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFi 813 (1034)
T KOG4190|consen 748 NSFISASKDKTVKLWSIKPEGDEIG------------TSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFI 813 (1034)
T ss_pred cceeeccCCceEEEEEeccccCccc------------cceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccc
Confidence 5568899999999997765544321 223556788999999999999999888876 78899999866
Q ss_pred CeEEEEec--ccCCCeEEEEEcCC--CCEEEEE-eCCCeEEEEECCCCCeeE--EEE--ecCCCCeEEEEEecCCCeEEE
Q 005473 587 FTVKSTLE--EHTQWITDVRFSPS--LSRLATS-SADRTVRVWDTENPDYSL--RTF--TGHSTTVMSLDFHPSKEDLLC 657 (695)
Q Consensus 587 ~~~~~~l~--~H~~~V~~v~~spd--g~~LaTg-s~DgtIrvWDl~t~~~~l--~~~--~gh~~~V~sl~fspdg~~lla 657 (695)
++++..+. ...+.+..|..-++ ..+++.| +...+|+++|.+..++.. ++. .+..+.+.+++..+.|++ ++
T Consensus 814 gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~-lA 892 (1034)
T KOG4190|consen 814 GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNK-LA 892 (1034)
T ss_pred cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcch-hh
Confidence 66654321 12333444444443 3344444 668899999999876421 222 344567899999999885 55
Q ss_pred EEeCCCcEEEEECCCCeEEEEEe
Q 005473 658 SCDNNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 658 Sgs~Dg~IriWDl~tg~~v~~~~ 680 (695)
.+-.+|+|-+.|.++|+.+..+.
T Consensus 893 a~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 893 AALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred HHhcCCcEEEEecCCCceeccCC
Confidence 77779999999999999877543
No 264
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.34 E-value=1.6e-06 Score=94.08 Aligned_cols=145 Identities=19% Similarity=0.259 Sum_probs=98.3
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEe---ccc---------------------------
Q 005473 548 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTL---EEH--------------------------- 596 (695)
Q Consensus 548 v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~~~~~~l---~~H--------------------------- 596 (695)
.+.+..|.++|.-++.-|+.. .|.+++.|+.|.-+|++...+...+ +.+
T Consensus 225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq 304 (559)
T KOG1334|consen 225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ 304 (559)
T ss_pred ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhh
Confidence 455667999999999998654 6889999999998888654321111 000
Q ss_pred -------------------------------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--C----------CeeE
Q 005473 597 -------------------------------TQWITDVRFSPSLSRLATSSADRTVRVWDTEN--P----------DYSL 633 (695)
Q Consensus 597 -------------------------------~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t--~----------~~~l 633 (695)
.-.|+|++|+.++.-|+++-.|-.|++|.-.- + ....
T Consensus 305 f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k 384 (559)
T KOG1334|consen 305 FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK 384 (559)
T ss_pred hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccc
Confidence 12366777776555555555566677763321 1 1111
Q ss_pred EEEecCCC--CeEEEEE-ecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 634 RTFTGHST--TVMSLDF-HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 634 ~~~~gh~~--~V~sl~f-spdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
.+++||.. .|..|-| -|... ++++|+.-|.|.|||-.+++.|..+++-...|.||.= ||
T Consensus 385 ~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEp-HP 446 (559)
T KOG1334|consen 385 RVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEP-HP 446 (559)
T ss_pred hhhcccccccccceeeeccCccc-eEEecCccceEEEEecchhHHHHHhhcccceEeccCC-CC
Confidence 33777763 3666655 56554 7889999999999999999999998887778888876 66
No 265
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=1.3e-06 Score=95.57 Aligned_cols=143 Identities=14% Similarity=0.213 Sum_probs=103.0
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCC
Q 005473 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (695)
Q Consensus 547 ~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t-------~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg 619 (695)
.+..+.||..+|..+.--.+.+-+++++.|++|++|.++. ..|..++..|+.+|.++.|-.+-+.++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 3466789999999998877888899999999999998853 34778889999999999999887777665 89
Q ss_pred eEEEEECCCCCeeEEEEe-cCCCCeEEEEEec--CCCeEEEEEeCCCcEEEEECCCCeEEEEEe-----cCCCcEEEEEE
Q 005473 620 TVRVWDTENPDYSLRTFT-GHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----NFFESFVSVRV 691 (695)
Q Consensus 620 tIrvWDl~t~~~~l~~~~-gh~~~V~sl~fsp--dg~~llaSgs~Dg~IriWDl~tg~~v~~~~-----~h~~~VtsVaf 691 (695)
.|++||.--++....... ...+.+..+..-+ +...+++.|+...+|+++|.+.++.+..++ +....+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 999999865553211111 1122333333323 344455556889999999999988776666 33345667765
No 266
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.33 E-value=1.7e-06 Score=62.74 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.1
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD 583 (695)
+++.++.+|.+.|++|+|+|++.+|++|+.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 267
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.29 E-value=1.5e-06 Score=98.07 Aligned_cols=125 Identities=20% Similarity=0.341 Sum_probs=102.2
Q ss_pred EEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (695)
Q Consensus 549 ~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~-~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl 626 (695)
..+.+|+..|+.+.|++... .+++++.|..|..||++.- .++..+..-...-..|+|+.....+...+..+.|+|||+
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~ 187 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL 187 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence 45679999999999998654 8999999999999999864 345555544566778999886555666667788999999
Q ss_pred CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 005473 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673 (695)
Q Consensus 627 ~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg 673 (695)
+.+..++..+++|...|.+++|..-....+.+++.||+|++||..+.
T Consensus 188 r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 188 RKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred cCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 99998899999999999999997654445679999999999999754
No 268
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.25 E-value=0.00041 Score=75.65 Aligned_cols=150 Identities=15% Similarity=0.209 Sum_probs=99.5
Q ss_pred eeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CeEEEE--ecc-----------cCCCeEEEEEcCCC
Q 005473 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTES-FTVKST--LEE-----------HTQWITDVRFSPSL 609 (695)
Q Consensus 545 ~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~-Dg~V~IWDl~t-~~~~~~--l~~-----------H~~~V~~v~~spdg 609 (695)
+..+............+++++++++|+++.. +|.|.++++.. +..... +.. .....+++.|+|++
T Consensus 76 L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg 155 (345)
T PF10282_consen 76 LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG 155 (345)
T ss_dssp EEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS
T ss_pred eEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC
Confidence 3444444433344567999999999999985 89999999976 443322 111 13457899999999
Q ss_pred CEEEEEeC-CCeEEEEECCCCCeeE---EEEe-cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC--CCe--EEEEEe
Q 005473 610 SRLATSSA-DRTVRVWDTENPDYSL---RTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGS--CAGVFK 680 (695)
Q Consensus 610 ~~LaTgs~-DgtIrvWDl~t~~~~l---~~~~-gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~--tg~--~v~~~~ 680 (695)
++|++... ...|++|+++.....+ ..+. .....-..+.|+|+++.+++.+..++.|.+|++. ++. .+..+.
T Consensus 156 ~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 156 RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence 98877643 4579999998755212 2222 3345678999999999999999999999999998 453 233333
Q ss_pred c----C--CCcEEEEEEeCCC
Q 005473 681 N----F--FESFVSVRVVQPR 695 (695)
Q Consensus 681 ~----h--~~~VtsVaf~sPd 695 (695)
. . ......|++ +||
T Consensus 236 ~~~~~~~~~~~~~~i~i-spd 255 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAI-SPD 255 (345)
T ss_dssp SCETTSCSSSSEEEEEE--TT
T ss_pred eccccccccCCceeEEE-ecC
Confidence 1 1 124678888 876
No 269
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.25 E-value=8.4e-06 Score=85.44 Aligned_cols=176 Identities=16% Similarity=0.243 Sum_probs=113.3
Q ss_pred CCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 005473 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (695)
Q Consensus 479 s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V 558 (695)
.+-++.+.|..+| .++++|..+|.|.+|--.....+...+.... ......+..++.+. -..+|
T Consensus 25 adiis~vef~~~G---------------e~LatGdkgGRVv~f~r~~~~~~ey~~~t~f-qshepEFDYLkSle-ieEKi 87 (433)
T KOG1354|consen 25 ADIISAVEFDHYG---------------ERLATGDKGGRVVLFEREKLYKGEYNFQTEF-QSHEPEFDYLKSLE-IEEKI 87 (433)
T ss_pred hcceeeEEeeccc---------------ceEeecCCCCeEEEeecccccccceeeeeee-eccCcccchhhhhh-hhhhh
Confidence 3455666666655 7899999999999993322211100000000 00011111111111 13468
Q ss_pred EEEEEcCCCC--EEEEEeCCCcEEEEECCCCe-----------------------------------EEEEe-cccCCCe
Q 005473 559 ESCHFSPDGK--LLATGGHDKKAVLWCTESFT-----------------------------------VKSTL-EEHTQWI 600 (695)
Q Consensus 559 ~~v~fspdg~--~LaSgs~Dg~V~IWDl~t~~-----------------------------------~~~~l-~~H~~~V 600 (695)
..+.|.+++. .++..+.|++|++|-+.... |.+++ .+|+--|
T Consensus 88 nkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhi 167 (433)
T KOG1354|consen 88 NKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHI 167 (433)
T ss_pred hhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEe
Confidence 8999998765 56677889999999764211 11111 3578889
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE--EEEecC-----CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473 601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 601 ~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l--~~~~gh-----~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t 672 (695)
.+|.++.|...++++ +|=.|-+|++.-...+. ..+..+ ..-|++..|||....+++..+..|+||+.|+|.
T Consensus 168 NSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 168 NSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred eeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 999999998888887 58889999987544332 222222 245899999999988999999999999999984
No 270
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.20 E-value=2.1e-06 Score=96.98 Aligned_cols=166 Identities=14% Similarity=0.199 Sum_probs=108.9
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~ 585 (695)
...+++++.|..|..|+..... .++.....-......|+|+-..-.+.+.++.+.|+|||.+
T Consensus 127 pdVlatcsvdt~vh~wd~rSp~------------------~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 127 PDVLATCSVDTYVHAWDMRSPH------------------RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred CcceeeccccccceeeeccCCC------------------cceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 3788999999999999664321 2233333333346789998755555556778889999997
Q ss_pred CC-eEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe-CC
Q 005473 586 SF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NN 662 (695)
Q Consensus 586 t~-~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs-~D 662 (695)
.+ .++..+++|...|+.++|.. ....+.+++.|++|++||......--.........|+.-.|-|-|+.++.--. .+
T Consensus 189 ~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~ 268 (1081)
T KOG0309|consen 189 KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGG 268 (1081)
T ss_pred CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCC
Confidence 54 57788999999999999976 35678899999999999997543211111223345666666665543321111 11
Q ss_pred CcEEE---------EECCC-CeEEEEEecCCCcEEEE
Q 005473 663 SEIRY---------WSINN-GSCAGVFKNFFESFVSV 689 (695)
Q Consensus 663 g~Iri---------WDl~t-g~~v~~~~~h~~~VtsV 689 (695)
..|.+ |++.+ ..+|.+|.||++.|...
T Consensus 269 n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eF 305 (1081)
T KOG0309|consen 269 NMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEF 305 (1081)
T ss_pred eeeeeccccchhhhhccccCCcceeeecCcchHHHHH
Confidence 23444 44333 46899999999877543
No 271
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.20 E-value=7.8e-05 Score=76.13 Aligned_cols=123 Identities=17% Similarity=0.139 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEE-EecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~--~~~-~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~ 634 (695)
+.++++++|++++++.+....|..|.++... .+. .+...++.=.+..|+.....+|++..||++.|||++....+..
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 7899999999999999999999999886432 233 2233345557889999889999999999999999997654432
Q ss_pred ----EEecCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473 635 ----TFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 635 ----~~~gh~~~V~sl~fspdg~-~llaSgs~Dg~IriWDl~tg~~v~~~~ 680 (695)
+...|.+.+..+.|++-|. .||+..-.-+.+++.|+++++-...+.
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 3346889999999998654 255556667899999999986554443
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.17 E-value=7e-05 Score=81.42 Aligned_cols=125 Identities=18% Similarity=0.221 Sum_probs=100.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 005473 553 ASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (695)
Q Consensus 553 ~H~~~V~~v~fspdg~~LaSgs~Dg-~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~ 631 (695)
+|.+.|.-..+.-+++-++.|..|| .+-|||.++++.. .+++.-+.|.++..+++|++++.+.....|.+.|++++..
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 6777799999988999999999999 8999999987765 4555678999999999999999999888999999999875
Q ss_pred eEEEEecCCCCeEEEEEecCCCeEEEEEeCCC----cEEEEECCCCeEEEEEe
Q 005473 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFK 680 (695)
Q Consensus 632 ~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg----~IriWDl~tg~~v~~~~ 680 (695)
.+ .-....+-|+..+|||++++ +|-+--+| .|+++|+..++....-.
T Consensus 436 ~~-idkS~~~lItdf~~~~nsr~-iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 436 RL-IDKSEYGLITDFDWHPNSRW-IAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred eE-ecccccceeEEEEEcCCcee-EEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 22 22334577999999999884 44544444 69999999887665544
No 273
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.15 E-value=0.00022 Score=79.87 Aligned_cols=134 Identities=13% Similarity=0.054 Sum_probs=85.1
Q ss_pred CCCCeEEEEEcCCCCEEEE-EeCC--CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECC
Q 005473 554 STSKVESCHFSPDGKLLAT-GGHD--KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTE 627 (695)
Q Consensus 554 H~~~V~~v~fspdg~~LaS-gs~D--g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-Dg--tIrvWDl~ 627 (695)
..+.+.+..|+|||+.|+. .+.+ ..|.++|+.++... .+..+.+......|+|||+.|+..+. .+ .|+++|+.
T Consensus 231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence 3445667889999986654 3333 56888898877644 44444444456789999987766553 33 58888888
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC--------CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D--------g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
++.....++.+. . ...|+|||+.+++++..+ ..|.+.|+.++.. ..+..+ .......| +||
T Consensus 310 ~g~~~rlt~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~-SPD 378 (419)
T PRK04043 310 SGSVEQVVFHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRF-SSD 378 (419)
T ss_pred CCCeEeCccCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEE-CCC
Confidence 765422222222 1 348999999888777643 3688889887754 333322 12235778 775
No 274
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.14 E-value=2.9e-06 Score=85.99 Aligned_cols=180 Identities=12% Similarity=0.152 Sum_probs=108.0
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
..++++..++.+.++. .++......|....+ ....+++.-|.++-.+-..+-.++-++++..||.+.+++.+.
T Consensus 48 ~~lf~~e~~~~~ss~g-----~~r~~~~~~~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~ 120 (319)
T KOG4714|consen 48 YILFTGETSSQIISLG-----KGRGRCISLWERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDK 120 (319)
T ss_pred heeecccchhheeeec-----cceEEEechhhcccC--cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechH
Confidence 3445555555555552 222222333332222 233444555555555555555677899999999999999875
Q ss_pred CeEE-EEecccCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 005473 587 FTVK-STLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (695)
Q Consensus 587 ~~~~-~~l~~H~~~V~~v~~spdg~~LaTgs~-----DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs 660 (695)
...+ +.+..-...-.+.++...+.+|.++.. -+..+.|+++..+..+..... ...|++++-+|....++++|+
T Consensus 121 ~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt 199 (319)
T KOG4714|consen 121 DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGT 199 (319)
T ss_pred HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc-cccchhhhCCcccccEEEEec
Confidence 2111 111111111223333333444444421 234677777653321212222 234999999999999999999
Q ss_pred CCCcEEEEECCCC-eEEEEEecCCCcEEEEEEeCCC
Q 005473 661 NNSEIRYWSINNG-SCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 661 ~Dg~IriWDl~tg-~~v~~~~~h~~~VtsVaf~sPd 695 (695)
.||.|.+||.+.. .++..+++|+.+|+.|-| ||.
T Consensus 200 ~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~F-Hpk 234 (319)
T KOG4714|consen 200 DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHF-HPK 234 (319)
T ss_pred CCCeEEEEEcccccchHHHHHHhhhhhhheec-cCC
Confidence 9999999999986 456778899999999999 984
No 275
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.13 E-value=0.00019 Score=80.51 Aligned_cols=109 Identities=13% Similarity=0.163 Sum_probs=77.8
Q ss_pred EEEEEcC-CCCEEEEE----eCCCcE----EEEECCCCeEEE---EecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473 559 ESCHFSP-DGKLLATG----GHDKKA----VLWCTESFTVKS---TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (695)
Q Consensus 559 ~~v~fsp-dg~~LaSg----s~Dg~V----~IWDl~t~~~~~---~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl 626 (695)
.++.|+. +...|.+. +.+|.+ ++|++...+..+ +-....+.|.|++++|+...|+.|+.||+|.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 6677766 33334432 334443 456654433221 11346788999999999999999999999999999
Q ss_pred CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (695)
Q Consensus 627 ~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~ 671 (695)
..+. ..+..+.-.++.++|||+|. +++.|+..|.|.+||+.
T Consensus 289 ~~~~---t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 289 TRGV---TLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMA 329 (545)
T ss_pred CCCe---eeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEee
Confidence 8642 33334445678999999998 77799989999999986
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.13 E-value=0.00021 Score=88.53 Aligned_cols=116 Identities=19% Similarity=0.177 Sum_probs=84.5
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEecc-------------c--------CCCeEEEEEcCCCCEEEE
Q 005473 557 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEE-------------H--------TQWITDVRFSPSLSRLAT 614 (695)
Q Consensus 557 ~V~~v~fspdg~~La-Sgs~Dg~V~IWDl~t~~~~~~l~~-------------H--------~~~V~~v~~spdg~~LaT 614 (695)
....|+|+|+++.|+ +-+.++.|++||+.++.......+ + -.....|+|+++|.++++
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA 820 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA 820 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence 356799999998555 445579999999987653221110 0 012358899999998888
Q ss_pred EeCCCeEEEEECCCCCeeEEEEecC--------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE
Q 005473 615 SSADRTVRVWDTENPDYSLRTFTGH--------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (695)
Q Consensus 615 gs~DgtIrvWDl~t~~~~l~~~~gh--------------~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~ 675 (695)
-..+++|++||..++.. .++.+. -.....|+++++|. ++++.+.++.|++||+.+++.
T Consensus 821 Ds~N~rIrviD~~tg~v--~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRV--TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCeE--EEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEECCCCcc
Confidence 88899999999987543 333221 12467899999997 777888899999999998765
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.11 E-value=5.4e-06 Score=101.21 Aligned_cols=119 Identities=17% Similarity=0.319 Sum_probs=93.5
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCC--Ce-EEEEecccCCCeEEEEEcCCCCEEEEEeCCC
Q 005473 546 TEFQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTES--FT-VKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~---Dg~V~IWDl~t--~~-~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg 619 (695)
+++...+.|......+.|-. .++++++. ++.|++||.-- .. ++. ..|.+.++++++.|...+|++|+.+|
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcC
Confidence 45666778888888888875 67777764 68999999632 22 333 78999999999999999999999999
Q ss_pred eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 620 tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~ 680 (695)
.|+|||++.... +.++.. ++ .+.+|++|+..|.|+||++.....+.++.
T Consensus 2359 ~v~l~D~rqrql-~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQL-RHTFQA---------LD--TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred cEEEeehHHHHH-HHHhhh---------hh--hhheeeccCcccceEEEEccccchhhcCc
Confidence 999999997543 444442 34 34578899999999999999887777766
No 278
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.09 E-value=1.2e-05 Score=83.33 Aligned_cols=128 Identities=20% Similarity=0.290 Sum_probs=92.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEeccc-----CCCeEEEEEcCC-CCEEEEEeCCCeEE
Q 005473 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEH-----TQWITDVRFSPS-LSRLATSSADRTVR 622 (695)
Q Consensus 552 ~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~---~~~~~l~~H-----~~~V~~v~~spd-g~~LaTgs~DgtIr 622 (695)
..|..-|.++.|+.|...++++. |-.|.+|+++-. -.+..++.| +..|++..|+|. ...+.-++..|.|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 46888899999999999888865 788999987532 223344555 356889999996 44666777899999
Q ss_pred EEECCCCCeeE---------------EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEecC
Q 005473 623 VWDTENPDYSL---------------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKNF 682 (695)
Q Consensus 623 vWDl~t~~~~l---------------~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~~h 682 (695)
+-|++....|. ..+.+-.+.|..+.|+++|++++ +-+ =-+|+|||++. ..|+.++.-|
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-sRd-yltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-SRD-YLTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-Eec-cceEEEEecccccCCceeechH
Confidence 99998543332 11223345688899999998444 555 35899999985 4688887655
No 279
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=0.00039 Score=77.29 Aligned_cols=129 Identities=20% Similarity=0.234 Sum_probs=92.5
Q ss_pred EEEEEcCCCC-E--EEEEeCCC---------cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEE--eCCCeEEEE
Q 005473 559 ESCHFSPDGK-L--LATGGHDK---------KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS--SADRTVRVW 624 (695)
Q Consensus 559 ~~v~fspdg~-~--LaSgs~Dg---------~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTg--s~DgtIrvW 624 (695)
..+.|++-|. + |++...|+ ++++.++.+..++..+. ..++|+++.|+|+++.++++ -.-.+|.||
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtif 299 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIF 299 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEE
Confidence 3577877766 2 33444454 57788887555555554 47999999999999876554 346689999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 625 Dl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs--~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
|++. . ++..+ ..+.=.++-|+|.|..++++|- --|.|-|||+.+.+++..+++... +-+.| +||
T Consensus 300 nlr~-~-~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW-~Pd 365 (566)
T KOG2315|consen 300 NLRG-K-PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEW-SPD 365 (566)
T ss_pred cCCC-C-EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEE-cCC
Confidence 9984 3 34444 3466688999999996665553 348999999999999999986542 55788 886
No 280
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=5.3e-05 Score=87.00 Aligned_cols=148 Identities=10% Similarity=0.094 Sum_probs=105.8
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (695)
Q Consensus 505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl 584 (695)
+++|++-|+.+|.|+++...... ++...|... ..+|++++||+.||+|.|-.+
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~---------------------~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl 100 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNP---------------------KTNFDHSSS------ILEGEYVASCSDDGKVVIGSL 100 (846)
T ss_pred hcceeeeccccceEEEEecCCcc---------------------ccccccccc------ccCCceEEEecCCCcEEEeec
Confidence 44899999999999998553221 122233332 668999999999999999998
Q ss_pred CCCeEEEEecccCCCeEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCCeeE-EEEecCCCCeEEEEEecCCCeEEEE
Q 005473 585 ESFTVKSTLEEHTQWITDVRFSPS-----LSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCS 658 (695)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~v~~spd-----g~~LaTgs~DgtIrvWDl~t~~~~l-~~~~gh~~~V~sl~fspdg~~llaS 658 (695)
-+.+...++.- ..++..|+++|+ .+.+++|+.-| +.++.-+--+... ..+..-.+.|.++.|.-+ ++|=
T Consensus 101 ~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAW 175 (846)
T KOG2066|consen 101 FTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAW 175 (846)
T ss_pred cCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEE
Confidence 88777766653 568999999997 56899999888 7777543222111 134455689999999843 7766
Q ss_pred EeCCCcEEEEECCCCeEEEEEecCCCc
Q 005473 659 CDNNSEIRYWSINNGSCAGVFKNFFES 685 (695)
Q Consensus 659 gs~Dg~IriWDl~tg~~v~~~~~h~~~ 685 (695)
++.+ -|+|||+.+++.+..++.....
T Consensus 176 and~-Gv~vyd~~~~~~l~~i~~p~~~ 201 (846)
T KOG2066|consen 176 ANDD-GVKVYDTPTRQRLTNIPPPSQS 201 (846)
T ss_pred ecCC-CcEEEeccccceeeccCCCCCC
Confidence 6645 5999999988887777644333
No 281
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.02 E-value=0.00058 Score=76.55 Aligned_cols=132 Identities=11% Similarity=0.024 Sum_probs=89.2
Q ss_pred CeEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEE-EeCC--CeEEEEECCCC
Q 005473 557 KVESCHFSPDGKL-LATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSAD--RTVRVWDTENP 629 (695)
Q Consensus 557 ~V~~v~fspdg~~-LaSgs~D---g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaT-gs~D--gtIrvWDl~t~ 629 (695)
.+..-.|+|||+. ++..+.+ ..|+++|+.+++...... ..+.+...+|+|||+.|+. .+.+ ..|+++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6789999999984 6654443 568889998887654443 4566778899999987654 4333 46888898775
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 630 ~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
. .+.+..+.+......|+|||+.++++.+..+ .|+++|+.+++..+...... ....| +||
T Consensus 268 ~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~-SPD 329 (419)
T PRK04043 268 T--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSV-STY 329 (419)
T ss_pred c--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCceE-CCC
Confidence 4 3444444444456789999998888876555 58888888776644332211 12367 775
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.99 E-value=0.00018 Score=78.24 Aligned_cols=111 Identities=18% Similarity=0.237 Sum_probs=89.0
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCC----eEE
Q 005473 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----TVR 622 (695)
Q Consensus 547 ~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg----tIr 622 (695)
+++.+...-+.|.++..+++|++++.+-+...+.+.|+++++....-+...+-|+.+.|+|+++++|-+--+| .|+
T Consensus 393 e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ik 472 (668)
T COG4946 393 EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIK 472 (668)
T ss_pred eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEE
Confidence 4455666777899999999999999999899999999999988766666778999999999999999886555 599
Q ss_pred EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEE
Q 005473 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (695)
Q Consensus 623 vWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSg 659 (695)
++|+..++. ...+...+.=.+-+|.||+++|.+.+
T Consensus 473 lydm~~~Ki--y~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 473 LYDMDGGKI--YDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEecCCCeE--EEecCCcccccCcccCCCCcEEEEEe
Confidence 999998663 33333445556788999998766544
No 283
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=2.5e-05 Score=88.10 Aligned_cols=158 Identities=11% Similarity=0.156 Sum_probs=116.2
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
.|+++|+.||.+++.....+.......+ .....+...-.++.||++.|.-+.|+.....|.+...+|.|.||-+-.
T Consensus 27 gyIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlyk 102 (1189)
T KOG2041|consen 27 GYIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYK 102 (1189)
T ss_pred CeEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeec
Confidence 7999999999999997654432221111 112234455678899999999999999999999999999999998866
Q ss_pred CeEEEEe--cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473 587 FTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (695)
Q Consensus 587 ~~~~~~l--~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~ 664 (695)
+.-.... ...++.|.+++|..+|..+...-.||.|.|=.++..+.--+.+.+ .....+.|++|.+.++ .+-..|.
T Consensus 103 gsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~L-f~~ange 179 (1189)
T KOG2041|consen 103 GSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQAL-FKKANGE 179 (1189)
T ss_pred ccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHH-hhhcCCc
Confidence 5433222 334678999999999999999999999988887754321122332 2345788999987444 6777899
Q ss_pred EEEEECC
Q 005473 665 IRYWSIN 671 (695)
Q Consensus 665 IriWDl~ 671 (695)
+++||..
T Consensus 180 ~hlydnq 186 (1189)
T KOG2041|consen 180 THLYDNQ 186 (1189)
T ss_pred EEEeccc
Confidence 9999964
No 284
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.98 E-value=2.9e-05 Score=81.58 Aligned_cols=132 Identities=16% Similarity=0.163 Sum_probs=94.1
Q ss_pred cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEE
Q 005473 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAV 580 (695)
Q Consensus 502 l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~ 580 (695)
+...++++.+|+..+.|.+++..... ...++. ... --|.+.|+|+..-. ++.+|.+.+.+|+|+
T Consensus 260 f~~s~nLv~~GcRngeI~~iDLR~rn-----------qG~~~~---a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkik 324 (425)
T KOG2695|consen 260 FAGSDNLVFNGCRNGEIFVIDLRCRN-----------QGNGWC---AQR-LYHDSSVTSLQILQFSQQKLMASDMTGKIK 324 (425)
T ss_pred hcccCCeeEecccCCcEEEEEeeecc-----------cCCCcc---eEE-EEcCcchhhhhhhccccceEeeccCcCcee
Confidence 56667899999999999999664331 112221 111 24788899998877 778898999999999
Q ss_pred EEECCCCeE---EEEecccCCCeE--EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC----CCCeEEEEEe
Q 005473 581 LWCTESFTV---KSTLEEHTQWIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH----STTVMSLDFH 649 (695)
Q Consensus 581 IWDl~t~~~---~~~l~~H~~~V~--~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh----~~~V~sl~fs 649 (695)
+||++..++ +..++||...-. -+...+..+.+++++.|...|||.++.+.. +.++.-. +..+.+++|.
T Consensus 325 LyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL-l~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 325 LYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL-LCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce-eeccCCCCccccccccceehh
Confidence 999998888 888899864333 334456778899999999999999998764 4444322 2234555554
No 285
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=7.8e-06 Score=88.21 Aligned_cols=159 Identities=17% Similarity=0.229 Sum_probs=115.1
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEE
Q 005473 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWC 583 (695)
Q Consensus 505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~-Dg~V~IWD 583 (695)
..+|+.+++.|+.++.|--.. ..-...++.++.|-+.|.+++.+-++.+++|.+. |+.++++|
T Consensus 19 ka~fiiqASlDGh~KFWkKs~----------------isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSR----------------ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred hhheEEeeecchhhhhcCCCC----------------ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence 348999999999999992211 0122345666778888888888888888888777 88888887
Q ss_pred CCCCeE------------------------------------------------EEEecccCCCeEEEEEcCCCCEEEEE
Q 005473 584 TESFTV------------------------------------------------KSTLEEHTQWITDVRFSPSLSRLATS 615 (695)
Q Consensus 584 l~t~~~------------------------------------------------~~~l~~H~~~V~~v~~spdg~~LaTg 615 (695)
+++... ...-.-|..+|.++.+.+.+..+++.
T Consensus 83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 743110 01112378899999999999999999
Q ss_pred eCCCeEEEEECCC----CCe-e---------EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473 616 SADRTVRVWDTEN----PDY-S---------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 616 s~DgtIrvWDl~t----~~~-~---------l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~ 680 (695)
...|.|..|.... ++. . +..+..-+...+++.|+|++. .+.+-+.|..||++++++|+.+..+.
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC-cccccCcccEEEEEEeccchhhhhhh
Confidence 8899999999873 110 0 111222345678999999998 45566789999999999999887765
No 286
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=2.1e-05 Score=83.97 Aligned_cols=114 Identities=14% Similarity=0.189 Sum_probs=89.8
Q ss_pred EEEEECCCCeEEEEecccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEE
Q 005473 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (695)
Q Consensus 579 V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~-~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~lla 657 (695)
|++.+..+.+....+.+|...|.+++|+|..+ ++..++.+.+|+|.|+++.. ++..+..| ..+++++|+-|..++|+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence 77777777676667788999999999999655 78899999999999999854 57778877 78999999999999999
Q ss_pred EEeCCCcEEEEECCCCeE-EEEEe--cCCCcEEEEEEeCC
Q 005473 658 SCDNNSEIRYWSINNGSC-AGVFK--NFFESFVSVRVVQP 694 (695)
Q Consensus 658 Sgs~Dg~IriWDl~tg~~-v~~~~--~h~~~VtsVaf~sP 694 (695)
+|...|.|.|||++..+- +..+. ....+|..|+.+.|
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~ 292 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQP 292 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCc
Confidence 999999999999986542 22222 23456666655333
No 287
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.91 E-value=0.00018 Score=80.79 Aligned_cols=74 Identities=20% Similarity=0.220 Sum_probs=63.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005473 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (695)
Q Consensus 553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t 628 (695)
.....|.||+++|+...|+.|+.||.|++||...+... +....-.++.++|+|+|..|++|+.-|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 45678999999999999999999999999998765433 323456788999999999999999999999999864
No 288
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.90 E-value=6.7e-05 Score=85.63 Aligned_cols=133 Identities=21% Similarity=0.350 Sum_probs=108.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCC------------CEEEEEeCCCeEEEEE
Q 005473 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL------------SRLATSSADRTVRVWD 625 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg------------~~LaTgs~DgtIrvWD 625 (695)
-.++.|+|.| +||-|+. ..|.|-|.++.+.+..++-|...|+.|+|.|.. -+|+++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 5788999876 6777775 458888999999999999999999999998731 2467778889999999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEec---CCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 626 TENPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 626 l~t~~~~l~~~~gh~~~V~sl~fsp---dg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
...... +..+..|.+.|-.++|-+ +.++++++-....+|.+|+..+|+.+-.+........++.| .|
T Consensus 96 ~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~-DP 165 (1062)
T KOG1912|consen 96 FVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRV-DP 165 (1062)
T ss_pred ehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeee-CC
Confidence 998654 667788889999999865 34456766666789999999999999888877677777887 76
No 289
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.88 E-value=2.9e-05 Score=81.01 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=76.5
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeeE
Q 005473 556 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSL 633 (695)
Q Consensus 556 ~~V~~v~fspdg~~LaSg-s~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~-LaTgs~DgtIrvWDl~t~~~~l 633 (695)
+.|.-+.|..|..+++++ ..|+.|.+|++...+-...+......+..++|+|||+. |.+...|-.|.||.+.+.+.
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-- 126 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-- 126 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee--
Confidence 457778898888876655 45789999999988888888877889999999999965 56677899999999998553
Q ss_pred EEEecCCCCeEEEEEecCCCe
Q 005473 634 RTFTGHSTTVMSLDFHPSKED 654 (695)
Q Consensus 634 ~~~~gh~~~V~sl~fspdg~~ 654 (695)
..+...+..+..++|+|||+.
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQF 147 (447)
T ss_pred EEecccccCceeEEECCCCce
Confidence 223333445788999999983
No 290
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.87 E-value=0.00012 Score=85.03 Aligned_cols=140 Identities=20% Similarity=0.266 Sum_probs=106.8
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC---------CC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---------DK 577 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~---------Dg 577 (695)
+++.+|...|+|.+-+. ..++.++++.+|++.|.++.. .|++|++||. |.
T Consensus 188 r~lf~G~t~G~V~LrD~-------------------~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~ 246 (1118)
T KOG1275|consen 188 RNLFCGDTRGTVFLRDP-------------------NSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDP 246 (1118)
T ss_pred cEEEeecccceEEeecC-------------------CcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccc
Confidence 77888888888877633 345778999999999887766 5889999886 45
Q ss_pred cEEEEECCCCeEEEEecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEC---CCCCeeEEEEecCCCCeEEEEEecCCC
Q 005473 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (695)
Q Consensus 578 ~V~IWDl~t~~~~~~l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl---~t~~~~l~~~~gh~~~V~sl~fspdg~ 653 (695)
.|+|||++..+.+.-+.-|.++ .-++|+|. ...+++++..|.+.+-|. .++...+..+..-...+.+++++++|.
T Consensus 247 FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~ 325 (1118)
T KOG1275|consen 247 FVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGD 325 (1118)
T ss_pred hhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCc
Confidence 6899999988776666555554 56788885 457778888899999994 443332344444445699999999987
Q ss_pred eEEEEEeCCCcEEEEE
Q 005473 654 DLLCSCDNNSEIRYWS 669 (695)
Q Consensus 654 ~llaSgs~Dg~IriWD 669 (695)
.++.|..+|.|.+|-
T Consensus 326 -alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 326 -ALAFGDHEGHVNLWA 340 (1118)
T ss_pred -eEEEecccCcEeeec
Confidence 788999999999997
No 291
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.85 E-value=8.1e-05 Score=84.11 Aligned_cols=117 Identities=17% Similarity=0.284 Sum_probs=92.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------------EEEEecccCCCeEEEEEcCCCCEEEEEeCCC
Q 005473 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---------------VKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (695)
Q Consensus 555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~---------------~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg 619 (695)
.....|+.|+.+..+||+|+.||.++|.-+.+.. .-.+++||.+.|.-+.|+.....|.|+..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3458899999999999999999999999664321 1246789999999999999889999999999
Q ss_pred eEEEEECCCCCeeEEEEe-cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473 620 TVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 620 tIrvWDl~t~~~~l~~~~-gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t 672 (695)
.|.||-+-.+..+..... ..++-|.+++|..||.. +|..-.||.|.|=.++.
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdG 146 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDG 146 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeecc
Confidence 999999987766433332 23466899999999984 55667788887766653
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.81 E-value=0.0023 Score=66.39 Aligned_cols=124 Identities=15% Similarity=0.233 Sum_probs=86.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-----------------------------------EE--------E--
Q 005473 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV-----------------------------------KS--------T-- 592 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~-----------------------------------~~--------~-- 592 (695)
-.-++||||+.+||.+...|+|+|||+....+ +. .
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 56799999999999999999999999852110 00 0
Q ss_pred ----------------ec-ccCCCeEEEEEcCCCCEEEEEeC----C-------CeEEEEECCCCCe-------------
Q 005473 593 ----------------LE-EHTQWITDVRFSPSLSRLATSSA----D-------RTVRVWDTENPDY------------- 631 (695)
Q Consensus 593 ----------------l~-~H~~~V~~v~~spdg~~LaTgs~----D-------gtIrvWDl~t~~~------------- 631 (695)
+. .+...|.++.|+|..++|+.|+. | .-+..|.+-++..
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~ 205 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT 205 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc
Confidence 00 12457899999999888877753 1 1366676532210
Q ss_pred ------e------EEEEe---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473 632 ------S------LRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF 682 (695)
Q Consensus 632 ------~------l~~~~---gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h 682 (695)
. ++.+. .....|..|.++|||. +||+...+|.|.+|++.+-++.+.++-+
T Consensus 206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccccccceeeccceeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchhhcccchh
Confidence 0 01111 1346799999999998 7778899999999999987777776643
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.78 E-value=0.002 Score=66.55 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=93.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEE-EEeCCCeEEEEE
Q 005473 555 TSKVESCHFSPDGKLLATGGHD--------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWD 625 (695)
Q Consensus 555 ~~~V~~v~fspdg~~LaSgs~D--------g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~La-Tgs~DgtIrvWD 625 (695)
....+.+++.++|++.++.... |.|..++.. ++...... .-.....|+|+|+++.|+ +-+..+.|..||
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~ 162 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFD 162 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEE
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEe
Confidence 3457899999999977776654 456777766 55444433 356678999999998765 556788899999
Q ss_pred CCCCCee---EEEE---ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473 626 TENPDYS---LRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 626 l~t~~~~---l~~~---~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf 691 (695)
+...... ...+ ....+..-.+++..+|. |+++....+.|.++|.+ |+.+..+......+++++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 163 LDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 9643321 1222 22223477899999987 66677778999999987 9999988877668899998
No 294
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.77 E-value=0.0032 Score=78.29 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=81.8
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccc---------------CCCeEEEEEcCCCCEE-EEEeCCCe
Q 005473 558 VESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEH---------------TQWITDVRFSPSLSRL-ATSSADRT 620 (695)
Q Consensus 558 V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H---------------~~~V~~v~~spdg~~L-aTgs~Dgt 620 (695)
-.+|+|++ ++.++++...++.|++||..++... .+.+. -.....|+|+|++..| ++-+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 35899999 5566667677899999999876543 22111 1234579999998855 55566789
Q ss_pred EEEEECCCCCeeEEE------------EecC--------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEE
Q 005473 621 VRVWDTENPDYSLRT------------FTGH--------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (695)
Q Consensus 621 IrvWDl~t~~~~l~~------------~~gh--------~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~ 678 (695)
|++||++++...+.. +..+ -.....++|+++|. ++++...++.|++||..++.+...
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTL 840 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEE
Confidence 999999876532111 0000 11246889999987 777888899999999988766543
No 295
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.75 E-value=0.0028 Score=67.49 Aligned_cols=141 Identities=12% Similarity=0.070 Sum_probs=97.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCC--CeEEE--EecccCCCeEEEEEcCCCCEEEEEeC-CCeEEEE
Q 005473 553 ASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTES--FTVKS--TLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW 624 (695)
Q Consensus 553 ~H~~~V~~v~fspdg~~LaSgs~D---g~V~IWDl~t--~~~~~--~l~~H~~~V~~v~~spdg~~LaTgs~-DgtIrvW 624 (695)
.+.+.++-++|+++.++|+++..+ |.|..|.++. |+... .......+-+.|++++++++|+++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 345567889999999999888654 7788877764 44322 22222334488999999999999875 5789999
Q ss_pred ECCCCCee--EEEEecCCCC----------eEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEE----EEecCCCcEEE
Q 005473 625 DTENPDYS--LRTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG----VFKNFFESFVS 688 (695)
Q Consensus 625 Dl~t~~~~--l~~~~gh~~~----------V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~----~~~~h~~~Vts 688 (695)
-+++.... +.....|.+. +-+..|.|++++++++.-.--.|.+|++..|.... .++...++ ..
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP-RH 195 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP-RH 195 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCc-ce
Confidence 99764321 1223335544 88899999999666555455579999999876432 23344444 88
Q ss_pred EEEeCCC
Q 005473 689 VRVVQPR 695 (695)
Q Consensus 689 Vaf~sPd 695 (695)
|+| ||+
T Consensus 196 i~F-Hpn 201 (346)
T COG2706 196 IVF-HPN 201 (346)
T ss_pred EEE-cCC
Confidence 999 996
No 296
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=8e-05 Score=79.73 Aligned_cols=120 Identities=19% Similarity=0.212 Sum_probs=88.1
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEE
Q 005473 548 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWD 625 (695)
Q Consensus 548 v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~-~LaTgs~DgtIrvWD 625 (695)
...+.+|...|..++|+|..+ ++..++.+.+|+|.|+++..++..+..| ..+++++|.-+.. +|..|...|.|.|||
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 446778888999999999888 8999999999999999999999888887 7899999988654 567777799999999
Q ss_pred CCCCCeeEEEEecC--CCCeEEEE------EecCCCeEEEEEeCCCcEEEEECC
Q 005473 626 TENPDYSLRTFTGH--STTVMSLD------FHPSKEDLLCSCDNNSEIRYWSIN 671 (695)
Q Consensus 626 l~t~~~~l~~~~gh--~~~V~sl~------fspdg~~llaSgs~Dg~IriWDl~ 671 (695)
++..+.++..+.+. ..+|..++ ..+.|. +++.... ...+|++.
T Consensus 265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~ 315 (463)
T KOG1645|consen 265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIV 315 (463)
T ss_pred ccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhh
Confidence 99876544444431 12333332 223344 4434433 35677764
No 297
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=2.3e-05 Score=90.16 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=102.9
Q ss_pred eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCC--eE
Q 005473 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TV 621 (695)
Q Consensus 544 ~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg--tI 621 (695)
.++..++++.|+...+||+|+-+.+.|+.|+..|.|++|++.+|........|.++|+.|.-+-+|..+++.+.-. -.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 4566778889999999999999999999999999999999999999999999999999999888988877765432 47
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEE
Q 005473 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (695)
Q Consensus 622 rvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~ 678 (695)
-+|++....-...+|. ...++.|+..-. .-+.|.....+.+||+.++.++.+
T Consensus 1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred HHhccccccCcccccc----ccceeehhhhHH-HHHhcccccceEEEecccCcHHHH
Confidence 8999986444455554 356788876533 223344445789999998876655
No 298
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.68 E-value=0.0091 Score=63.70 Aligned_cols=114 Identities=12% Similarity=0.171 Sum_probs=86.7
Q ss_pred EEEEEcCCCCEEEEEeC-CCcEEEEECCC-CeEE--EEecccCCC----------eEEEEEcCCCCEEEEEeC-CCeEEE
Q 005473 559 ESCHFSPDGKLLATGGH-DKKAVLWCTES-FTVK--STLEEHTQW----------ITDVRFSPSLSRLATSSA-DRTVRV 623 (695)
Q Consensus 559 ~~v~fspdg~~LaSgs~-Dg~V~IWDl~t-~~~~--~~l~~H~~~----------V~~v~~spdg~~LaTgs~-DgtIrv 623 (695)
+-++++++|++|+++.. -|.|.++-+.+ |.+. ..+..|.+. +.+..+.|++++|++.+- --.|.+
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence 77999999999999986 58899998865 3322 223346555 889999999999988753 236999
Q ss_pred EECCCCCeeEE--EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473 624 WDTENPDYSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 624 WDl~t~~~~l~--~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t 672 (695)
|++..++.... ........-+.|.|||+++...+.+--+++|.+|.+..
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 99997664221 11133456789999999998888888999999999987
No 299
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.66 E-value=0.0027 Score=77.71 Aligned_cols=137 Identities=17% Similarity=0.174 Sum_probs=92.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC---C---CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC---CCeEEEE
Q 005473 554 STSKVESCHFSPDGKLLATGGH---D---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVW 624 (695)
Q Consensus 554 H~~~V~~v~fspdg~~LaSgs~---D---g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~---DgtIrvW 624 (695)
+.+.-..|+|-.||.|+|+.+. + ..+|||+-+ |....+.+.-.+--.+++|.|.|.+||+... ...|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 4556678999999999998875 2 579999965 6665555544555668999999999999864 3446666
Q ss_pred ECCCCCeeEEEEe--cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe---cCCCcEEEEEEeCC
Q 005473 625 DTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---NFFESFVSVRVVQP 694 (695)
Q Consensus 625 Dl~t~~~~l~~~~--gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~---~h~~~VtsVaf~sP 694 (695)
.-..-+.-...+. .....|..+.|++|+. +||..-.|. |.+|-+.+.....+.. .....+..+.| ||
T Consensus 287 ErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~W-dp 358 (928)
T PF04762_consen 287 ERNGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKW-DP 358 (928)
T ss_pred ecCCcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEE-CC
Confidence 6543221112222 3456799999999988 565555454 9999998765432222 22334455889 87
No 300
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.59 E-value=0.00044 Score=71.95 Aligned_cols=163 Identities=16% Similarity=0.254 Sum_probs=100.6
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHDKKAVLWCT 584 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~--~LaSgs~Dg~V~IWDl 584 (695)
.++++|...|.|.+|.-.....-..++...... ....+..++.+. -..+|..+.|..++. .++..+.|++|++|-+
T Consensus 39 ~YlatGDkgGRVvlfer~~s~~ceykf~teFQs-he~EFDYLkSle-ieEKin~I~w~~~t~r~hFLlstNdktiKlWKi 116 (460)
T COG5170 39 LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQS-HELEFDYLKSLE-IEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKI 116 (460)
T ss_pred ceEeecCCCceEEEeecccccccchhhhhhhcc-cccchhhhhhcc-HHHHhhheeeecCCCcceEEEecCCceeeeeee
Confidence 789999888999988322111000000000000 001111111111 123588899976543 4666678999999976
Q ss_pred CCCe------------------------------------------EEEEe-cccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 005473 585 ESFT------------------------------------------VKSTL-EEHTQWITDVRFSPSLSRLATSSADRTV 621 (695)
Q Consensus 585 ~t~~------------------------------------------~~~~l-~~H~~~V~~v~~spdg~~LaTgs~DgtI 621 (695)
.... +.+.. ..|.--|.++.|..|...++++ +|=.|
T Consensus 117 yeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrI 195 (460)
T COG5170 117 YEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRI 195 (460)
T ss_pred ecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec-cceee
Confidence 4210 01111 3567778899998887777776 57889
Q ss_pred EEEECCCCCee--EEEEecCC-----CCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473 622 RVWDTENPDYS--LRTFTGHS-----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 622 rvWDl~t~~~~--l~~~~gh~-----~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t 672 (695)
.+|++.-...+ +..+..|. .-|++..|||....++...+..|.|++-|+|.
T Consensus 196 NLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 196 NLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred eeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 99998755433 23333332 34789999999888888888899999999983
No 301
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.58 E-value=0.0078 Score=65.71 Aligned_cols=121 Identities=14% Similarity=0.109 Sum_probs=86.3
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEECCC-----CeEEEEecc-------cCCCeEEEEEcCCCCEEEEEe----------CC
Q 005473 562 HFSP-DGKLLATGGHDKKAVLWCTES-----FTVKSTLEE-------HTQWITDVRFSPSLSRLATSS----------AD 618 (695)
Q Consensus 562 ~fsp-dg~~LaSgs~Dg~V~IWDl~t-----~~~~~~l~~-------H~~~V~~v~~spdg~~LaTgs----------~D 618 (695)
.|.+ +|++++...+ |+|.+-|+.. .+.+..+.. ..+.+.-+++++++++++... ..
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence 3455 8888888776 9999999543 233332211 223344599999999887742 12
Q ss_pred CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCeEEEEE-ecCCCc
Q 005473 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVF-KNFFES 685 (695)
Q Consensus 619 gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~-~llaSgs~Dg~IriWDl~tg~~v~~~-~~h~~~ 685 (695)
+.|.++|+.+.+. +..+.. ...+..++|+||++ .++++...++.|.++|+.+++.++.+ .....+
T Consensus 279 ~~V~ViD~~t~kv-i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg~~P 345 (352)
T TIGR02658 279 RFLFVVDAKTGKR-LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQLGRGP 345 (352)
T ss_pred CEEEEEECCCCeE-EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCCCCC
Confidence 5799999998775 554442 34789999999999 77767767899999999999999998 444333
No 302
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.49 E-value=0.0026 Score=67.51 Aligned_cols=120 Identities=15% Similarity=0.213 Sum_probs=87.5
Q ss_pred EEEcCCCCEEEEEeCC-----CcEEEEECC-CCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-------CC--------
Q 005473 561 CHFSPDGKLLATGGHD-----KKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-------DR-------- 619 (695)
Q Consensus 561 v~fspdg~~LaSgs~D-----g~V~IWDl~-t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-------Dg-------- 619 (695)
-+|++||++|++.-.| |.|-|||+. +...+..+..|.-.-..+.+.||+..|+++.. .|
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 5799999999997654 889999998 77788888888777788899999977776631 12
Q ss_pred ---eEEEEECCCCCee-------------EE----------------------------EE----------------ecC
Q 005473 620 ---TVRVWDTENPDYS-------------LR----------------------------TF----------------TGH 639 (695)
Q Consensus 620 ---tIrvWDl~t~~~~-------------l~----------------------------~~----------------~gh 639 (695)
.+-+.|..++... ++ .+ ...
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l 215 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRL 215 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhh
Confidence 2333343333210 00 00 012
Q ss_pred CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 640 ~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~ 680 (695)
...|-+|+++.++..+++|+-..+.+.+||..+++++....
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence 35688999999999888899999999999999998887665
No 303
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.43 E-value=0.003 Score=69.73 Aligned_cols=115 Identities=13% Similarity=0.176 Sum_probs=86.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECC
Q 005473 553 ASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTE 627 (695)
Q Consensus 553 ~H~~~V~~v~fspdg~~LaSgs--~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D---gtIrvWDl~ 627 (695)
+-.++|..++|.|.++.+++.+ .+-++.++|+++. .+..+ ....=..+.|+|.++++++++.| |.|-+||..
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccC
Confidence 4578899999999988766554 6888999999865 44333 33445678899999999998876 469999999
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe-----CCCcEEEEECCC
Q 005473 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----NNSEIRYWSINN 672 (695)
Q Consensus 628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs-----~Dg~IriWDl~t 672 (695)
....++..+.+. ...-++|+||+..+...-. .|..|.|||+..
T Consensus 349 ~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 349 GRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred CceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 766666567654 3456789999986654332 478899999863
No 304
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00059 Score=76.92 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=78.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (695)
Q Consensus 556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~-~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~ 634 (695)
-.|.-+.|+|.-.+||.+..+|.|.++.+. ...+.++..|...|+ +++|.|||+.||.|-.||+|++-|+.++.....
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 347889999999999999999999999998 888889987777777 999999999999999999999999998775333
Q ss_pred EEecCCCCeEEEEEec
Q 005473 635 TFTGHSTTVMSLDFHP 650 (695)
Q Consensus 635 ~~~gh~~~V~sl~fsp 650 (695)
....-...|.++.|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 2223345677777753
No 305
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.41 E-value=0.0019 Score=75.48 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=81.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEECC
Q 005473 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---------DRTVRVWDTE 627 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~---------DgtIrvWDl~ 627 (695)
.|+-++. +++++++|...|+|.+-|.++.+.++++..|.+.|.++... |++|+|+|. |..|+|||+|
T Consensus 179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred ceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--CCeEEEeecccccccccccchhhhhhhh
Confidence 3444444 68899999999999999999999999999999999888775 788988874 7779999999
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 005473 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (695)
Q Consensus 628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWD 669 (695)
..+. +.-+.-+.+. .-+.|+|.-...+|.++..|.+.+-|
T Consensus 255 mmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 255 MMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred hhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeecc
Confidence 7553 3333323332 44667777666667777778888777
No 306
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.0034 Score=72.23 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=94.1
Q ss_pred eeEEEecCCCCCeEEEEEcCC------C------CEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcC---CC-
Q 005473 546 TEFQLIPASTSKVESCHFSPD------G------KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SL- 609 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fspd------g------~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~sp---dg- 609 (695)
..+..+..|...|+.|.|.|. + -+||++...|.|.|||...+..+..+..|.++|.+++|-+ +.
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Sr 125 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSR 125 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcch
Confidence 456677889999999999882 1 2578888889999999999888888999999999999976 33
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (695)
Q Consensus 610 ~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl 670 (695)
.+|+.-....+|.+|+..+|.. +..+........|+.+.|-...-++.-+..|.|-+-+.
T Consensus 126 d~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 126 DVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred heeEEecCCcEEEEEEccCCce-eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 3555556678999999999875 55554444556778888855444545555777777765
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.38 E-value=0.078 Score=54.59 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=75.8
Q ss_pred eEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeEEEEecc-----cCCCeEEEEEcCCCCEEEEEeCC--------CeEEE
Q 005473 558 VESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD--------RTVRV 623 (695)
Q Consensus 558 V~~v~fs-pdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~-----H~~~V~~v~~spdg~~LaTgs~D--------gtIrv 623 (695)
...+++. ++++ |+.+..++ +.++|..+++....+.. .....+++++.|+|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6677777 5655 45555544 56669988866544432 34668899999999988877643 55777
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 624 WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t 672 (695)
++.. ++ +..+...-.....|+|+|+++.|+++-+..+.|..||+..
T Consensus 120 ~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~ 165 (246)
T PF08450_consen 120 IDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA 165 (246)
T ss_dssp EETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred ECCC-Ce--EEEEecCcccccceEECCcchheeecccccceeEEEeccc
Confidence 7777 33 2323323456789999999998888888899999999963
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.007 Score=70.13 Aligned_cols=141 Identities=21% Similarity=0.168 Sum_probs=93.5
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-----CCEEEEEeCCCcE
Q 005473 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----GKLLATGGHDKKA 579 (695)
Q Consensus 505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd-----g~~LaSgs~Dg~V 579 (695)
.+.++++||.||+|.+....++. .... ..-..++.+|+++|+ .+.+++||.-| +
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~-------------------~~~~-~df~rpiksial~Pd~~~~~sk~fv~GG~ag-l 140 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDD-------------------EITQ-YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-L 140 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCc-------------------ccee-EecCCcceeEEeccchhhhhhhheeecCcce-E
Confidence 46899999999999988443221 1111 122456899999997 56789999888 7
Q ss_pred EEEECCC--CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCC------CeEEEEEecC
Q 005473 580 VLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST------TVMSLDFHPS 651 (695)
Q Consensus 580 ~IWDl~t--~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~------~V~sl~fspd 651 (695)
.++.-+= .+.-..+....++|.+|.|. |.++|-++.+| |+|||+.+... +..+.-... .-..+.|.++
T Consensus 141 vL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~-l~~i~~p~~~~R~e~fpphl~W~~~ 216 (846)
T KOG2066|consen 141 VLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQR-LTNIPPPSQSVRPELFPPHLHWQDE 216 (846)
T ss_pred EEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccce-eeccCCCCCCCCcccCCCceEecCC
Confidence 7764221 11112455568999999997 67999998776 89999988654 333332222 2356888877
Q ss_pred CCeEEEEEeCCCcEEEEECCCC
Q 005473 652 KEDLLCSCDNNSEIRYWSINNG 673 (695)
Q Consensus 652 g~~llaSgs~Dg~IriWDl~tg 673 (695)
.. ++-|- ..+|+|..++.+
T Consensus 217 ~~--LVIGW-~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 217 DR--LVIGW-GDSVKICSIKKR 235 (846)
T ss_pred Ce--EEEec-CCeEEEEEEecc
Confidence 54 33444 457999998843
No 309
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.29 E-value=0.014 Score=71.56 Aligned_cols=136 Identities=19% Similarity=0.246 Sum_probs=89.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC---------------C--------CeEEEEecc----------------
Q 005473 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---------------S--------FTVKSTLEE---------------- 595 (695)
Q Consensus 555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~---------------t--------~~~~~~l~~---------------- 595 (695)
...|.|++||||+.+|+.++.+++|.+.+.. . |+....|.|
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 4469999999999999999999988887431 0 000001100
Q ss_pred --------cCCCeEEEEEcCCCCEEEEEeC---C---CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 005473 596 --------HTQWITDVRFSPSLSRLATSSA---D---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (695)
Q Consensus 596 --------H~~~V~~v~~spdg~~LaTgs~---D---gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~ 661 (695)
+.+.-..|+|..||.++|+.+. + +.||||+-. +. ...+...-.+--.+++|.|.|. +||+.-.
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~-lIA~~q~ 276 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGN-LIASSQR 276 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce-EEeccccCCCccCCccCCCCCC-EEEEEEE
Confidence 2234567899999999998864 2 579999977 33 2333332333346789999998 6655543
Q ss_pred ---CCcEEEEECCCCeEEEEEe----cCCCcEEEEEEeCCC
Q 005473 662 ---NSEIRYWSINNGSCAGVFK----NFFESFVSVRVVQPR 695 (695)
Q Consensus 662 ---Dg~IriWDl~tg~~v~~~~----~h~~~VtsVaf~sPd 695 (695)
...|.+|. ++|-....|. .....|..|+| ++|
T Consensus 277 ~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~W-n~d 315 (928)
T PF04762_consen 277 LPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAW-NSD 315 (928)
T ss_pred cCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEE-CCC
Confidence 45677777 5565555554 34578899999 875
No 310
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.0019 Score=74.69 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=63.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~ 627 (695)
+++++|+|..-+|++|=.-|.+.+|...+.+.-.....|..+|.-+.|+++|..++|+..-|.|.+|.++
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5679999999899999889999999998877777778899999999999999999999999999999876
No 311
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.29 E-value=0.00077 Score=45.80 Aligned_cols=39 Identities=41% Similarity=0.578 Sum_probs=34.7
Q ss_pred CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (695)
Q Consensus 587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD 625 (695)
++++..+..|...|.+++|.+.+.++++++.|+.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 356667778999999999999989999999999999996
No 312
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.0018 Score=71.99 Aligned_cols=129 Identities=18% Similarity=0.209 Sum_probs=86.5
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEECC
Q 005473 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDTE 627 (695)
Q Consensus 559 ~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-----------DgtIrvWDl~ 627 (695)
+-+.|||-|.||+|-..-| |.+|--.....+..+. |. .|.-+.|||+.++|+|=+. ...++|||++
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 5689999999999988666 8899766655555554 54 4788999999999998653 2469999999
Q ss_pred CCCeeEEEEecCC--CCeE-EEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 628 NPDYSLRTFTGHS--TTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 628 t~~~~l~~~~gh~--~~V~-sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
+|.. .+.|.... ..++ -+.|+.|+++ +|.-. ...|.||+..+-.++..-.---..|....| +|
T Consensus 291 tG~l-krsF~~~~~~~~~WP~frWS~DdKy-~Arm~-~~sisIyEtpsf~lld~Kslki~gIr~Fsw-sP 356 (698)
T KOG2314|consen 291 TGLL-KRSFPVIKSPYLKWPIFRWSHDDKY-FARMT-GNSISIYETPSFMLLDKKSLKISGIRDFSW-SP 356 (698)
T ss_pred ccch-hcceeccCCCccccceEEeccCCce-eEEec-cceEEEEecCceeeecccccCCccccCccc-CC
Confidence 9875 55555422 2233 3579999884 43333 357999998764433222222234444555 54
No 313
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.22 E-value=0.00083 Score=45.62 Aligned_cols=38 Identities=37% Similarity=0.575 Sum_probs=33.7
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (695)
Q Consensus 546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD 583 (695)
.++..+..|...|.++.|++++.++++++.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566678899999999999999999999999999996
No 314
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.20 E-value=0.0099 Score=64.90 Aligned_cols=102 Identities=13% Similarity=-0.000 Sum_probs=77.9
Q ss_pred CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCCeeEEEEecCC------
Q 005473 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGHS------ 640 (695)
Q Consensus 577 g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~----------DgtIrvWDl~t~~~~l~~~~gh~------ 640 (695)
++|.|.|..+.+.+.++..-..+- .+ ++||++.|++++. +..|.+||+.+.+. +..+.-..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhhc
Confidence 889999999999988886433333 24 9999998877654 78999999999775 55554211
Q ss_pred -CCeEEEEEecCCCeEEEEEeC-CCcEEEEECCCCeEEEEEec
Q 005473 641 -TTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKN 681 (695)
Q Consensus 641 -~~V~sl~fspdg~~llaSgs~-Dg~IriWDl~tg~~v~~~~~ 681 (695)
.....++++|||++++++--. +..|.+.|+.+++.+..+..
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 223478899999987766634 89999999999998888774
No 315
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.16 E-value=0.016 Score=58.77 Aligned_cols=114 Identities=11% Similarity=0.008 Sum_probs=76.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE-EecCC---C
Q 005473 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHS---T 641 (695)
Q Consensus 566 dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~-~~gh~---~ 641 (695)
++..+++++.++.|..||..+++.+..+.. .+.+...- ...+..++.++.|+.|+.+|+.+++. +.. ..... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~-~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKV-LWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCE-EEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcce-eeeeccccccccc
Confidence 566788888999999999999999887764 22222111 12356777777888999999999886 444 23221 1
Q ss_pred CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC
Q 005473 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF 683 (695)
Q Consensus 642 ~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~ 683 (695)
.........++. .++.+..++.|+.+|+++|+.+..+..+.
T Consensus 112 ~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 112 VRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp TB--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred cccccCceEecC-EEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 112222332355 44466669999999999999988887644
No 316
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.00016 Score=83.49 Aligned_cols=152 Identities=18% Similarity=0.218 Sum_probs=105.4
Q ss_pred cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CC-cE
Q 005473 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DK-KA 579 (695)
Q Consensus 502 l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~-Dg-~V 579 (695)
|...+++++.|+..|.|++|.+..+. ......+|..+|+-|.-+.||..+++.+. .. ..
T Consensus 1109 fs~~~~hL~vG~~~Geik~~nv~sG~-------------------~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1109 FSGGTNHLAVGSHAGEIKIFNVSSGS-------------------MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred eecCCceEEeeeccceEEEEEccCcc-------------------ccccccccccccccccccCCcceeeeeccccCchH
Confidence 34445899999999999999775552 22345689999999999999997665543 32 57
Q ss_pred EEEECCC-CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC---CCeEEEEEecCCCeE
Q 005473 580 VLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS---TTVMSLDFHPSKEDL 655 (695)
Q Consensus 580 ~IWDl~t-~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~---~~V~sl~fspdg~~l 655 (695)
-+|++.. +..++++.+ -.++.|+.....-+.|+....+.|||+.+...+...+.+.. -.-.++.|+|+...+
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 7999853 455556654 45888887644445666667799999999876444344321 223678899998744
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473 656 LCSCDNNSEIRYWSINNGSCAGVFKNF 682 (695)
Q Consensus 656 laSgs~Dg~IriWDl~tg~~v~~~~~h 682 (695)
| .|| .+||++..+.|+.|...
T Consensus 1246 l----ndG--vLWDvR~~~aIh~FD~f 1266 (1516)
T KOG1832|consen 1246 L----NDG--VLWDVRIPEAIHRFDQF 1266 (1516)
T ss_pred e----eCc--eeeeeccHHHHhhhhhh
Confidence 4 366 56999988777766543
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.017 Score=67.50 Aligned_cols=166 Identities=13% Similarity=0.112 Sum_probs=108.7
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC-eEEEEEcCCCCEEEEEeCCC-----cEE
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-VESCHFSPDGKLLATGGHDK-----KAV 580 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~-V~~v~fspdg~~LaSgs~Dg-----~V~ 580 (695)
..++.|+.||.|...+. .+..+..+.++... |..+....+..+|++-+.|+ .|+
T Consensus 36 ~~vvigt~~G~V~~Ln~--------------------s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llk 95 (933)
T KOG2114|consen 36 GSVVIGTADGRVVILNS--------------------SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLK 95 (933)
T ss_pred ceEEEeeccccEEEecc--------------------cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEE
Confidence 56788888888877732 22333455566655 44444444446888877765 489
Q ss_pred EEECCCC------eEE--EEecc-----cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC---CCCCeeEEEEecCCCCeE
Q 005473 581 LWCTESF------TVK--STLEE-----HTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVM 644 (695)
Q Consensus 581 IWDl~t~------~~~--~~l~~-----H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl---~t~~~~l~~~~gh~~~V~ 644 (695)
|||++.. .++ ..+.+ ...++.+++.+.+-..+|+|-.||.|.++.= |.............++|+
T Consensus 96 iw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT 175 (933)
T KOG2114|consen 96 IWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT 175 (933)
T ss_pred EecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce
Confidence 9998643 233 12222 2467889999999889999999999999843 221111223333457899
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEECCCCeE-EEEEecCCCcEEEEEEeCC
Q 005473 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 645 sl~fspdg~~llaSgs~Dg~IriWDl~tg~~-v~~~~~h~~~VtsVaf~sP 694 (695)
.+.|..++..+++.+. -..|.+|.+....+ +.++..|..++.|..| ++
T Consensus 176 gL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~-~~ 224 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSF-SD 224 (933)
T ss_pred eeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeec-CC
Confidence 9999999887443443 45799999884332 4557788888888877 54
No 318
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.09 E-value=0.00011 Score=82.47 Aligned_cols=168 Identities=15% Similarity=0.223 Sum_probs=108.3
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEe----CCCcEEE
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGG----HDKKAVL 581 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs----~Dg~V~I 581 (695)
.+++.|..+|.|.+.......+. -.....+|...++|++|++ |.+.||.|- .|..+.|
T Consensus 71 cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred hhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 57788999999988865443221 1123457788899999988 455666653 2567999
Q ss_pred EECCCC--eEEE--Eec-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEE
Q 005473 582 WCTESF--TVKS--TLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (695)
Q Consensus 582 WDl~t~--~~~~--~l~-~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~ll 656 (695)
||+.++ .+.. .+. +.......++|-.+.++|.+|...+.|+++|++... .....--+..|..+...|-...++
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~--~~~~svnTk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL--DSVSSVNTKYVQGITVDPFSPNYF 211 (783)
T ss_pred eecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh--hhhhhhhhhhcccceecCCCCCce
Confidence 999876 2221 122 234556688998888899999999999999998422 222221233566677777334467
Q ss_pred EEEeCCCcEEEEE-CCCCe-EEEEEecCCC----cEEEEEEeCCC
Q 005473 657 CSCDNNSEIRYWS-INNGS-CAGVFKNFFE----SFVSVRVVQPR 695 (695)
Q Consensus 657 aSgs~Dg~IriWD-l~tg~-~v~~~~~h~~----~VtsVaf~sPd 695 (695)
|+-. ||.|-+|| .++-+ ++..+..... .+..++| .|.
T Consensus 212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ay-cPt 254 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAY-CPT 254 (783)
T ss_pred eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEe-ccC
Confidence 5544 99999999 44432 3333322222 3788888 773
No 319
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.08 E-value=0.016 Score=52.41 Aligned_cols=102 Identities=21% Similarity=0.207 Sum_probs=68.5
Q ss_pred eEEEEEc---CCC-CEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 005473 558 VESCHFS---PDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (695)
Q Consensus 558 V~~v~fs---pdg-~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l 633 (695)
|+++++. .|| +.|++|+.|..||||+-+ +.+..+.. .+.|++++-... ..++.+-.+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl--- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL--- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee---
Confidence 4555554 344 479999999999999854 56666665 456777776665 679999999999999875432
Q ss_pred EEEecCCCCeEEEEEec---CCCeEEEEEeCCCcEEE
Q 005473 634 RTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRY 667 (695)
Q Consensus 634 ~~~~gh~~~V~sl~fsp---dg~~llaSgs~Dg~Iri 667 (695)
.... .+..++++++.. ||..-|++|-.+|.|-+
T Consensus 75 WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2222 223466666543 34445668877887753
No 320
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.07 E-value=0.0044 Score=70.89 Aligned_cols=135 Identities=15% Similarity=0.124 Sum_probs=95.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee--
Q 005473 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-- 632 (695)
Q Consensus 556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l-~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~-- 632 (695)
..|.--+++..+++|+.|+.-|.|++|+-.+++....- .+-.+.+..+..+++..++|.|+..|.|.|+-+......
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 33555556667899999999999999998776654332 334566667778888888899999999999987653321
Q ss_pred --EEEE-ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC----eEEEEEecCCCcEEEEEE
Q 005473 633 --LRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 633 --l~~~-~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg----~~v~~~~~h~~~VtsVaf 691 (695)
+..+ ..|...|++++|++++..+ ++|+..|.|.+-.++.. ..+..+-.-.+.|..|.+
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~-ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~ 178 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKL-YSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDY 178 (726)
T ss_pred eeeccccccCCceEEEEEecccccEE-eecCCCceEEEEEechhhhhccccceeeccCcceEEeec
Confidence 1111 2367889999999999854 59999999999988772 223333344556665554
No 321
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0022 Score=72.42 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=74.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeE-EEEEecCCCeEEEEEeCCCcEEEEECCCCeE
Q 005473 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (695)
Q Consensus 597 ~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~-sl~fspdg~~llaSgs~Dg~IriWDl~tg~~ 675 (695)
.-.|.-+.|+|...++|++..+|.|-+..+.- . .+.++.-|...|+ +++|.|||+ +++.|-.||+|++-|+.++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-q-Rlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW-Q-RLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc-c-eeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence 34578899999999999999999998888873 2 3677776666676 999999988 888999999999999999887
Q ss_pred EEEEe-cCCCcEEEEEE
Q 005473 676 AGVFK-NFFESFVSVRV 691 (695)
Q Consensus 676 v~~~~-~h~~~VtsVaf 691 (695)
+..+. .-..+|+++-|
T Consensus 97 l~~~~~s~e~~is~~~w 113 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIW 113 (665)
T ss_pred eeccccccccchheeec
Confidence 77632 34467777777
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.04 E-value=0.016 Score=69.96 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=76.2
Q ss_pred EEEEEcCCCCEEEEEe----CC-CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCC
Q 005473 559 ESCHFSPDGKLLATGG----HD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPD 630 (695)
Q Consensus 559 ~~v~fspdg~~LaSgs----~D-g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs---~DgtIrvWDl~t~~ 630 (695)
+.|+|--||.++|+.. .+ ++|+|||-+ +..-.+-+...+.=.+++|-|.|.++++-. .|..|.+|.-..-.
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~ 277 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR 277 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence 5699999999998832 24 899999987 444333333445556899999999988863 36678888765321
Q ss_pred ee--EEEEecCCCCeEEEEEecCCCeEEEE---EeCCCcEEEEECCCC
Q 005473 631 YS--LRTFTGHSTTVMSLDFHPSKEDLLCS---CDNNSEIRYWSINNG 673 (695)
Q Consensus 631 ~~--l~~~~gh~~~V~sl~fspdg~~llaS---gs~Dg~IriWDl~tg 673 (695)
.- +..+..-...|..++|+.++. +|+. +.....|++|-+.+.
T Consensus 278 hg~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 278 HGEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCe
Confidence 10 111222233489999999987 5554 455556999998765
No 323
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.01 E-value=0.012 Score=64.69 Aligned_cols=111 Identities=14% Similarity=0.026 Sum_probs=77.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEE
Q 005473 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMS 645 (695)
Q Consensus 567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~-~~V~s 645 (695)
+..++.++.+|.++.||..+++.+..... . ....... .+..|+.++.||.|+.+|..+++. +....... ..+.+
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~-~W~~~~~~~~~~ss 315 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTDADGVVVALDRRSGSE-LWKNDELKYRQLTA 315 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccCceE--eCCEEEEECCCCeEEEEECCCCcE-EEccccccCCcccc
Confidence 45788888899999999999988776642 1 1112222 467888888999999999998764 43332211 12233
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCc
Q 005473 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFES 685 (695)
Q Consensus 646 l~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~ 685 (695)
.... +. .++.++.||.|++||..+|+.+..++.+...
T Consensus 316 p~i~--g~-~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~ 352 (377)
T TIGR03300 316 PAVV--GG-YLVVGDFEGYLHWLSREDGSFVARLKTDGSG 352 (377)
T ss_pred CEEE--CC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCc
Confidence 3332 34 4557888999999999999999988866543
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.046 Score=64.08 Aligned_cols=130 Identities=11% Similarity=0.121 Sum_probs=92.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005473 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (695)
Q Consensus 554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~----t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~ 629 (695)
...++.+++.+.+-+.+|+|-.||.|..+.-+ .+........-..+|+.+.+.-++..++.......|.+|.+...
T Consensus 124 ~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 124 NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence 35678999999999999999999999988421 11111122223688999999888776434444567999999854
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cCCCc
Q 005473 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-NFFES 685 (695)
Q Consensus 630 ~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~h~~~ 685 (695)
...+..+..|...+.|..|++....++|++ +..|.+||......-..|. +|+.-
T Consensus 204 ~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 204 TPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred CcceeeeccCCccceeeecCCCCccEEEec--CceEEEEcCCCcceeeeecCCCeEE
Confidence 434566788888899999997655466555 4579999988666666666 66543
No 325
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.98 E-value=0.14 Score=51.88 Aligned_cols=106 Identities=18% Similarity=0.116 Sum_probs=70.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCC----------eEEEEEcCCCCEEEEEeCCCe-EEEEECCCCCeeEE
Q 005473 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------ITDVRFSPSLSRLATSSADRT-VRVWDTENPDYSLR 634 (695)
Q Consensus 566 dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~----------V~~v~~spdg~~LaTgs~Dgt-IrvWDl~t~~~~l~ 634 (695)
++..++.+..++.|..+|+++|+.+.....+... +..-....++ .++.++.++. +.+ |+.+++. +.
T Consensus 121 ~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~-~w 197 (238)
T PF13360_consen 121 DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEK-LW 197 (238)
T ss_dssp ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEE-EE
T ss_pred ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCE-EE
Confidence 3778888888999999999999998887654422 1122222234 7777777775 555 9999774 33
Q ss_pred EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEE
Q 005473 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (695)
Q Consensus 635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~ 678 (695)
... ...+..+ ...++..++ .++.++.|.+||+++|+.+-.
T Consensus 198 ~~~--~~~~~~~-~~~~~~~l~-~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 198 SKP--ISGIYSL-PSVDGGTLY-VTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEC--SS-ECEC-EECCCTEEE-EEETTTEEEEEETTTTEEEEE
T ss_pred Eec--CCCccCC-ceeeCCEEE-EEeCCCEEEEEECCCCCEEeE
Confidence 222 2333332 345566455 455899999999999987643
No 326
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=96.97 E-value=0.0012 Score=46.09 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHhhcCCC
Q 005473 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39 (695)
Q Consensus 9 ~~~L~~yIydyl~k~~~~~tA~af~~e~~~~ 39 (695)
+..|+..|++||.++|+.++|++|.+|.++.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 4578999999999999999999999998864
No 327
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.93 E-value=0.048 Score=58.02 Aligned_cols=136 Identities=15% Similarity=0.137 Sum_probs=97.2
Q ss_pred EEEEEcC-CCCEEEEEeCCCc-EEEEECCCCeEEEEecccCCCe--EEEEEcCCCCEEEEE-----eCCCeEEEEECCCC
Q 005473 559 ESCHFSP-DGKLLATGGHDKK-AVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATS-----SADRTVRVWDTENP 629 (695)
Q Consensus 559 ~~v~fsp-dg~~LaSgs~Dg~-V~IWDl~t~~~~~~l~~H~~~V--~~v~~spdg~~LaTg-----s~DgtIrvWDl~t~ 629 (695)
..++.+| ....++.+-.-|+ ..+||+.+++....+....+.- =.-+|++||++|+|. ...|.|-|||+...
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 4577888 5556677766654 6689999998887775433322 256799999999886 34678999999955
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCeEEEEEe-----------------CCCcEEEEECCCCeEEEEEe----cCCCcEEE
Q 005473 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWSINNGSCAGVFK----NFFESFVS 688 (695)
Q Consensus 630 ~~~l~~~~gh~~~V~sl~fspdg~~llaSgs-----------------~Dg~IriWDl~tg~~v~~~~----~h~~~Vts 688 (695)
-..+..|..|.-.--.+.+.|||+.|++.-+ .+..+.+-|..+|+.+.... -|.-.|..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 5567788877666677889999976664422 23467777888898887744 37778888
Q ss_pred EEEeCCC
Q 005473 689 VRVVQPR 695 (695)
Q Consensus 689 Vaf~sPd 695 (695)
+++ .++
T Consensus 168 La~-~~~ 173 (305)
T PF07433_consen 168 LAV-DGD 173 (305)
T ss_pred EEe-cCC
Confidence 887 654
No 328
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.88 E-value=0.053 Score=59.53 Aligned_cols=146 Identities=11% Similarity=0.016 Sum_probs=87.9
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~ 585 (695)
+..+..++.++.|..++..++. .+|..... . ........ ++..++.++.|+.|..+|..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~-------~~W~~~~~----------~--~~~~~p~v--~~~~v~v~~~~g~l~ald~~ 123 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGK-------RLWRVDLD----------E--RLSGGVGA--DGGLVFVGTEKGEVIALDAE 123 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCc-------EeeeecCC----------C--CcccceEE--cCCEEEEEcCCCEEEEEECC
Confidence 3566777788888888654442 12211111 0 00011222 46678888899999999999
Q ss_pred CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCe-----EEEEEecCCCeEEEEEe
Q 005473 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-----MSLDFHPSKEDLLCSCD 660 (695)
Q Consensus 586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V-----~sl~fspdg~~llaSgs 660 (695)
+++.+...... +.+.+.-.. .+..++.++.|+.|+.||.++++. +..+......+ .+..+. + . .++.+.
T Consensus 124 tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~~~~~~sp~~~-~-~-~v~~~~ 197 (377)
T TIGR03300 124 DGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALTLRGSASPVIA-D-G-GVLVGF 197 (377)
T ss_pred CCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCceeecCCCCCEEE-C-C-EEEEEC
Confidence 99988766532 222211111 245777788899999999998774 44443222111 112222 2 2 455777
Q ss_pred CCCcEEEEECCCCeEEEE
Q 005473 661 NNSEIRYWSINNGSCAGV 678 (695)
Q Consensus 661 ~Dg~IriWDl~tg~~v~~ 678 (695)
.++.|..+|.++|+.+..
T Consensus 198 ~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWE 215 (377)
T ss_pred CCCEEEEEEccCCCEeee
Confidence 889999999999876644
No 329
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.77 E-value=0.016 Score=69.11 Aligned_cols=99 Identities=10% Similarity=0.114 Sum_probs=72.7
Q ss_pred CEEEEEeCCCcEEEEECCCCe--EEEE-e--cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCC
Q 005473 568 KLLATGGHDKKAVLWCTESFT--VKST-L--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT 642 (695)
Q Consensus 568 ~~LaSgs~Dg~V~IWDl~t~~--~~~~-l--~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~ 642 (695)
.-.+.|-.+..++.||.+-.. ++.. . ........|++-..+ .+||+|+.+|.||+||- .++.+...+.+...+
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~p 620 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDP 620 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCC-ceEEEEeCCCcEEeecc-cchhhhhcCCCCCCC
Confidence 345677778899999987532 2211 1 112344667766554 69999999999999994 344445667788899
Q ss_pred eEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (695)
Q Consensus 643 V~sl~fspdg~~llaSgs~Dg~IriWDl 670 (695)
|.+|+.+.||+++|||| +..|.++|.
T Consensus 621 I~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 621 IIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred eeEEEecCCCcEEEEee--cceEEEEEE
Confidence 99999999999999887 568888886
No 330
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.61 E-value=0.0079 Score=66.53 Aligned_cols=111 Identities=22% Similarity=0.190 Sum_probs=83.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCC--------------
Q 005473 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-------------- 619 (695)
Q Consensus 554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg-------------- 619 (695)
-.-+|..++|||.|++|++...-+ |.+|+......+..+. ...|..+.|+|.+.+|+|=+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 344688999999999999987665 9999987766554443 35689999999999999876533
Q ss_pred -eEEEEECCCCCeeEEEEecCCCC--eE-EEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473 620 -TVRVWDTENPDYSLRTFTGHSTT--VM-SLDFHPSKEDLLCSCDNNSEIRYWSI 670 (695)
Q Consensus 620 -tIrvWDl~t~~~~l~~~~gh~~~--V~-sl~fspdg~~llaSgs~Dg~IriWDl 670 (695)
.+.|||+.++.. +..+.+.... .+ -+.|+-+..+.+-. ....|+|+++
T Consensus 108 n~~~vwd~~sg~i-v~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~ 159 (561)
T COG5354 108 NNVFVWDIASGMI-VFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI 159 (561)
T ss_pred CceeEEeccCcee-EeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec
Confidence 499999998765 7888776655 55 67788776633222 3457999997
No 331
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.07 Score=59.82 Aligned_cols=159 Identities=18% Similarity=0.179 Sum_probs=94.8
Q ss_pred cccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEE
Q 005473 533 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612 (695)
Q Consensus 533 ~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~L 612 (695)
...+||..+|...+.+.++++....-.-+.||.|++++|.-..| .|.||+.....++..-.-.-..|....|+|.+.+|
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLL 361 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceE
Confidence 34567777776666666665555555678999999999987765 59999987755443322334678899999998887
Q ss_pred EEEeC-----CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe---------CCCcEEEEECCCCeEEEE
Q 005473 613 ATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGV 678 (695)
Q Consensus 613 aTgs~-----DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs---------~Dg~IriWDl~tg~~v~~ 678 (695)
|-=.. -..+-+-.+.++.. +++..-|.-.=+.+-|-..|.+|.+-.. .=..+-||.++....-..
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~-iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve 440 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKRE-IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE 440 (698)
T ss_pred EEEcccccCCcceEEEEecCccce-eeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence 65321 23466666665443 5555544444455667777774443221 112345565554332211
Q ss_pred EecCCCcEEEEEEeCC
Q 005473 679 FKNFFESFVSVRVVQP 694 (695)
Q Consensus 679 ~~~h~~~VtsVaf~sP 694 (695)
.-.-++.|...+| -|
T Consensus 441 ~velke~vi~FaW-EP 455 (698)
T KOG2314|consen 441 VVELKESVIAFAW-EP 455 (698)
T ss_pred eeecchheeeeee-cc
Confidence 1234455566666 55
No 332
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.51 E-value=0.064 Score=55.24 Aligned_cols=109 Identities=10% Similarity=-0.023 Sum_probs=79.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCe-EE
Q 005473 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-MS 645 (695)
Q Consensus 567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V-~s 645 (695)
..+++.|++.+.+.--|..+++.+..-. -...|.+-+.- -|.+++.|+..|.+++.+..++.. +..+.... .| ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~-~w~f~~~~-~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ-IWNFVILE-TVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh-eeeeeehh-hhccc
Confidence 4578889999999999999988775432 12333332222 367899999999999999999865 44444322 23 22
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 646 l~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~ 680 (695)
....+++. ++..|+.|+..+..|.++..|+.+.+
T Consensus 99 a~~d~~~g-lIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 99 AQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred eEEcCCCc-eEEEecCCCcEEEecccccceEEecc
Confidence 33466666 77899999999999999999998877
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.50 E-value=0.044 Score=63.41 Aligned_cols=64 Identities=8% Similarity=0.020 Sum_probs=47.9
Q ss_pred CCCEEEEEeCCCeEEEEECCC----CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe
Q 005473 608 SLSRLATSSADRTVRVWDTEN----PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (695)
Q Consensus 608 dg~~LaTgs~DgtIrvWDl~t----~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~ 674 (695)
+|++... .+++|.|.|.++ +...+..+. -......|+++|||+++++++..+.+|.|.|+.+.+
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 5555544 257899999987 333233333 345678899999999999999999999999998754
No 334
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.49 E-value=0.24 Score=55.10 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCEEEEE-eCC----CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCC-----------eE
Q 005473 558 VESCHFSPDGKLLATG-GHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV 621 (695)
Q Consensus 558 V~~v~fspdg~~LaSg-s~D----g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg-----------tI 621 (695)
+..+.++|||++||.+ +.. ..|+|+|+++++.+........ ...+.|.+++..|+....|. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4468899999988755 333 4599999999987653321111 22399999988776654333 38
Q ss_pred EEEECCCCCee-EEEEecCCCC--eEEEEEecCCCeEEEEEeCCC---cEEEEECCCC
Q 005473 622 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG 673 (695)
Q Consensus 622 rvWDl~t~~~~-l~~~~gh~~~--V~sl~fspdg~~llaSgs~Dg---~IriWDl~tg 673 (695)
++|.+.++... ...+.+.... ...+.+++|++++++...... .|++.|+..+
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 88898876432 3444443332 578889999998887665444 4888888764
No 335
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0055 Score=66.84 Aligned_cols=139 Identities=14% Similarity=0.124 Sum_probs=93.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 005473 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTEN 628 (695)
Q Consensus 553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t---~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-DgtIrvWDl~t 628 (695)
-|.+.|+.|... -.+++.+|+.||.++.|--.. .+.+..+..|-+.|.+++.+-++.++.|++. |..++++|+.+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 477767766554 567999999999999996432 3455667789999999999999999999888 99999999986
Q ss_pred CCee-EEEEecCCCCeEEEEEecCCC--eEEEEEeCCCcEEEEECCCCe-EEEEEe-cCCCcEEEEEEeCC
Q 005473 629 PDYS-LRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGS-CAGVFK-NFFESFVSVRVVQP 694 (695)
Q Consensus 629 ~~~~-l~~~~gh~~~V~sl~fspdg~--~llaSgs~Dg~IriWDl~tg~-~v~~~~-~h~~~VtsVaf~sP 694 (695)
-... ...+.-..+.+..+ .++... .+.++.-.++.|.|+|-+..- .+..++ -|..+|..+.+ .|
T Consensus 86 ~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y-~q 154 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY-NQ 154 (558)
T ss_pred cchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe-ec
Confidence 5431 11111112222211 122211 244445578999999987654 333333 68999999887 54
No 336
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.37 E-value=0.022 Score=63.90 Aligned_cols=116 Identities=22% Similarity=0.209 Sum_probs=79.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe---CC-CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEE-EeCCCe--EEEEE
Q 005473 553 ASTSKVESCHFSPDGKLLATGG---HD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRVWD 625 (695)
Q Consensus 553 ~H~~~V~~v~fspdg~~LaSgs---~D-g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaT-gs~Dgt--IrvWD 625 (695)
.....+..-+|++++..++... .. ..+.++|+.+++....+. ..+.-...+|+|||+.|+. ...||. |++.|
T Consensus 190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEc
Confidence 3445577889999998655442 22 358999999887665554 2344457889999987754 456665 67778
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (695)
Q Consensus 626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~ 671 (695)
+.... +..+..-.+.-+.-.|+|||+.++++.+..|.-.||-++
T Consensus 269 l~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~ 312 (425)
T COG0823 269 LDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYD 312 (425)
T ss_pred CCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEEC
Confidence 77654 333444444445778999999999999888876666543
No 337
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.034 Score=62.11 Aligned_cols=116 Identities=10% Similarity=0.126 Sum_probs=79.0
Q ss_pred ecCCCCCeEEEEEcCCCCE-------EEEEeCCCcEEEEECCCCe--EEEEecccC----CCeEEEEEcCCCCEEEEEeC
Q 005473 551 IPASTSKVESCHFSPDGKL-------LATGGHDKKAVLWCTESFT--VKSTLEEHT----QWITDVRFSPSLSRLATSSA 617 (695)
Q Consensus 551 l~~H~~~V~~v~fspdg~~-------LaSgs~Dg~V~IWDl~t~~--~~~~l~~H~----~~V~~v~~spdg~~LaTgs~ 617 (695)
++-|.+ |+-+.+.|+.+. -+.|-.|..|+-||.+-.. .+....+|. ....|++-- ...+||.||.
T Consensus 372 Wk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~ 449 (644)
T KOG2395|consen 372 WKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSL 449 (644)
T ss_pred eeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec-CCceEEEeec
Confidence 333444 666777775442 2456668889999987322 222223331 223344433 3569999999
Q ss_pred CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (695)
Q Consensus 618 DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~ 671 (695)
+|.||+||- .+......+.+...+|..|+.+.+|+++|++| +.++.+.|+.
T Consensus 450 ~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 450 KGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL 500 (644)
T ss_pred CCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence 999999998 44544567888889999999999999998777 5678877764
No 338
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.34 E-value=0.0089 Score=69.40 Aligned_cols=110 Identities=15% Similarity=0.229 Sum_probs=85.5
Q ss_pred EEEEEcCCCCEEEEEeC----CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473 559 ESCHFSPDGKLLATGGH----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (695)
Q Consensus 559 ~~v~fspdg~~LaSgs~----Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~ 634 (695)
+-..|+|...++++++. .|.|.||- ++|++-+.++. .-.+++++|+|..-.|+.|-.-|.+.||...+.+. -.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCcee-ee
Confidence 44678888888888764 58888874 56665544432 23456799999888889998899999999987554 34
Q ss_pred EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t 672 (695)
....|...|..+.|+++|. .++++..-|.|.+|.+.-
T Consensus 96 v~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEeee
Confidence 4556999999999999998 455999999999998763
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.32 E-value=0.74 Score=51.34 Aligned_cols=135 Identities=18% Similarity=0.178 Sum_probs=78.0
Q ss_pred eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cc------cCCCeEEEEEcC-----CC-
Q 005473 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL- 609 (695)
Q Consensus 544 ~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l--~~------H~~~V~~v~~sp-----dg- 609 (695)
.+.+...+....++|++|+.| |=-++|.|..||.+.|.|++.-..+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 467777788889999999998 4458999999999999999887776542 22 235688888862 22
Q ss_pred --CEEEEEeCCCeEEEEECCC---CCeeE---EEEecCCCCeEEEE-EecC--------------------CCeEEEEEe
Q 005473 610 --SRLATSSADRTVRVWDTEN---PDYSL---RTFTGHSTTVMSLD-FHPS--------------------KEDLLCSCD 660 (695)
Q Consensus 610 --~~LaTgs~DgtIrvWDl~t---~~~~l---~~~~gh~~~V~sl~-fspd--------------------g~~llaSgs 660 (695)
-+|++|...|.+.+|.+.- +...+ .....+.+.|..+. |+.+ -+.+++.++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 3688999999999997741 22221 11224556666665 3221 122444554
Q ss_pred CCCcEEEEECCCCeEEEEEe
Q 005473 661 NNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 661 ~Dg~IriWDl~tg~~v~~~~ 680 (695)
+..|||+...+.++..+..
T Consensus 234 -e~~irv~~~~~~k~~~K~~ 252 (395)
T PF08596_consen 234 -ESDIRVFKPPKSKGAHKSF 252 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-
T ss_pred -ccceEEEeCCCCcccceee
Confidence 6789999998887766554
No 340
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.26 E-value=0.08 Score=56.92 Aligned_cols=134 Identities=12% Similarity=0.131 Sum_probs=90.5
Q ss_pred CeEEEEEcCCCCEEEEEeC---------CCcEEEEECC-CCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEE
Q 005473 557 KVESCHFSPDGKLLATGGH---------DKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWD 625 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs~---------Dg~V~IWDl~-t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-DgtIrvWD 625 (695)
..+.+...|+|++.++... -..-.||.+. .+..++.+..|-..-+.|+|+||++.|+.+.. .+.|+-|+
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 3567888899987776544 1122466655 56666666666666788999999988777654 57888887
Q ss_pred CCC--C----CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCeEEEEEecCCCcEEEEEEe
Q 005473 626 TEN--P----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKNFFESFVSVRVV 692 (695)
Q Consensus 626 l~t--~----~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D-g~IriWDl~tg~~v~~~~~h~~~VtsVaf~ 692 (695)
+.. + ......+..+.+..=.++...+|. +++++..+ +.|.+|+.. |+.+..++.+...+++++|-
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 762 1 111122223345555677777877 44344434 399999988 99999999887788888883
No 341
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.25 E-value=0.33 Score=52.23 Aligned_cols=112 Identities=12% Similarity=0.119 Sum_probs=72.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEec-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-
Q 005473 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD- 630 (695)
Q Consensus 554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~-~~~~l~-~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~- 630 (695)
..++|++|+-- .++ |+.|. ++.|++|++...+ .+..-. .....|+++... +.+++.|...+.|.++..+...
T Consensus 87 ~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 87 VKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp ESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE
T ss_pred ecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCC
Confidence 46789998877 444 44444 5889999998777 443322 123466666665 5699999888888877544322
Q ss_pred -eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473 631 -YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (695)
Q Consensus 631 -~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~ 671 (695)
..+........+|++++|-++++ .++.++.+|.|.++...
T Consensus 162 ~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 162 KLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp -EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-
T ss_pred EEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEEC
Confidence 22222233456789999997775 67799999999999886
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.15 E-value=0.1 Score=58.59 Aligned_cols=164 Identities=14% Similarity=0.108 Sum_probs=96.2
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCc--EEEEE
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKK--AVLWC 583 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~-Dg~--V~IWD 583 (695)
.++.+...|++..+|....... .... +..-.+.-..=.|+|||++|+-.+. .|. |.++|
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~---------------~~~~---Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~ 312 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGK---------------NLPR---LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYD 312 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCC---------------ccee---cccCCccccCccCCCCCCEEEEEeCCCCCcceEEEC
Confidence 6777777888888885533211 0111 2222222235678999998776654 454 55556
Q ss_pred CCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC-Ce--EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 005473 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RT--VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (695)
Q Consensus 584 l~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D-gt--IrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs 660 (695)
++..... .+....+.-.+-.|+|+|++|+..+.. |. |.+.|+.++.. ++.+. +......-+|.+++..++.+++
T Consensus 313 ~~g~~~~-riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 313 LEGSQVT-RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCCCcee-EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 6665543 333333333388899999998777643 43 77777766553 34443 3344556788999998877766
Q ss_pred CCCcEEEEEC-CCCeEEEEEecCCCcEEEEEE
Q 005473 661 NNSEIRYWSI-NNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 661 ~Dg~IriWDl-~tg~~v~~~~~h~~~VtsVaf 691 (695)
.-+.=.++.+ .+++....+..-.+.+...+|
T Consensus 390 ~~~~~~l~~~s~~g~~~~~~~~~~~~~~~p~w 421 (425)
T COG0823 390 QGGGSVLSLVSLDGRVSRPLPLADGDVRVPAW 421 (425)
T ss_pred CCCCceEEEeeccceeEEEEeccCcceecccc
Confidence 5433333333 345555555544455555555
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.12 E-value=0.2 Score=51.68 Aligned_cols=84 Identities=11% Similarity=0.012 Sum_probs=59.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEE
Q 005473 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (695)
Q Consensus 566 dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~s 645 (695)
-|.+++.|+..|.+++.+++++.....+..-...-......+++.++..|+.|++++..|.++.. |+.......+.-.+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc-eEEecccCCceecc
Confidence 46789999999999999999997776665432222234456789999999999999999999854 45554433332333
Q ss_pred EEEec
Q 005473 646 LDFHP 650 (695)
Q Consensus 646 l~fsp 650 (695)
-++.|
T Consensus 141 P~i~~ 145 (354)
T KOG4649|consen 141 PVIAP 145 (354)
T ss_pred ceecC
Confidence 44455
No 344
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.10 E-value=0.43 Score=49.93 Aligned_cols=131 Identities=20% Similarity=0.222 Sum_probs=82.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEeccc---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473 561 CHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (695)
Q Consensus 561 v~fspdg~~LaSgs~Dg~V~IWDl~t~--~~~~~l~~H---~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~ 635 (695)
++.+.+|++||.-- |..|-|-..+.. .++.+..-. .-.=..++|+||+.+||.+...|+|+|||+-... +..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~--lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE--LFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce--eEE
Confidence 45678898887755 667777765432 122222112 2234679999999999999999999999997532 222
Q ss_pred Eec-------CCCCeEEEEEecCC-----CeEEEEEeCCCcEEEEECCC-----CeEEEEEe---cCCCcEEEEEEeCCC
Q 005473 636 FTG-------HSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN-----GSCAGVFK---NFFESFVSVRVVQPR 695 (695)
Q Consensus 636 ~~g-------h~~~V~sl~fspdg-----~~llaSgs~Dg~IriWDl~t-----g~~v~~~~---~h~~~VtsVaf~sPd 695 (695)
+.. -...|..+.|..-. ...|..-..+|.++-|-+.. .+...+|. .+...|+++.| ||.
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy-~p~ 158 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY-HPK 158 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE-cCC
Confidence 221 12456777775432 22333555688888887632 23444444 34679999999 884
No 345
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.08 E-value=1.4 Score=45.94 Aligned_cols=123 Identities=12% Similarity=0.262 Sum_probs=75.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----E--EEEe-----cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT----V--KSTL-----EEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~----~--~~~l-----~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD 625 (695)
-...|++..++.++++.-.++.+.++++.... . ...+ ..+...+..++|+|.+..|+.+-...-.+||.
T Consensus 66 D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~ 145 (248)
T PF06977_consen 66 DYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYE 145 (248)
T ss_dssp SEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEE
T ss_pred CceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEE
Confidence 37889998888888777678999999883311 1 1111 12456689999999888887777666666666
Q ss_pred CCC--CCeeE--EEEe------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473 626 TEN--PDYSL--RTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 626 l~t--~~~~l--~~~~------gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~ 680 (695)
++. ....+ .... .....+.++.++|....+++.++.+..|.++| .+|+.+..+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~ 209 (248)
T PF06977_consen 146 VNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS 209 (248)
T ss_dssp EESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred EccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence 653 11111 1111 23345789999999888999999999999999 6788777666
No 346
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.06 E-value=0.11 Score=60.36 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=73.9
Q ss_pred CCCCEEEEEeCCCcEEEEECCC-----CeEEEEecccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCe-------
Q 005473 565 PDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDY------- 631 (695)
Q Consensus 565 pdg~~LaSgs~Dg~V~IWDl~t-----~~~~~~l~~H~~~V~~v~~spdg~~LaTgs-~DgtIrvWDl~t~~~------- 631 (695)
++|++...+ +++|.|.|..+ .+.+..+. -....+.|.++|||+++++++ .+.+|.|.|+.+.+.
T Consensus 286 kdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 286 KAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 367776663 67899999987 34444443 356678999999999886665 589999999987442
Q ss_pred ----eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473 632 ----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 632 ----~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t 672 (695)
.+....- ...-...+|.++|. .+.|.--|..|-.||+.+
T Consensus 363 ~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 1122221 22345788998886 777888899999999875
No 347
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.88 E-value=0.033 Score=64.01 Aligned_cols=105 Identities=12% Similarity=0.082 Sum_probs=76.6
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~ 585 (695)
+.+++-|+.-|.|.+|.-+.+.-. .....+-.+.+..+..+++..++|.|+..|.|.|+-+.
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~~~------------------~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGEMR------------------KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred CceEEEecccceEEEEecCchhhh------------------cccccCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 489999999999999855433210 00111234446677788888899999999999999775
Q ss_pred CCeE-----EEEe-cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005473 586 SFTV-----KSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (695)
Q Consensus 586 t~~~-----~~~l-~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t 628 (695)
...+ +..+ ..|...|+|++|++++..|++|..-|+|.+-.++.
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 5322 1111 34788999999999999999999999998887776
No 348
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.86 E-value=0.3 Score=57.12 Aligned_cols=124 Identities=11% Similarity=0.128 Sum_probs=80.4
Q ss_pred eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-ccCCCeEEEEEc--CCCCEEEEEeCCCe
Q 005473 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADRT 620 (695)
Q Consensus 544 ~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~-~H~~~V~~v~~s--pdg~~LaTgs~Dgt 620 (695)
.+....++......+..+.-+.-++..++-+....+.|||++.+.....-. ...+.|.++.|. |++..+++.|....
T Consensus 18 ~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 18 EWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH 97 (631)
T ss_pred EEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE
Confidence 334444444444455666666666655555556789999999877543322 347889999995 57889999999999
Q ss_pred EEEEECC-----CCC---eeEEE--EecCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473 621 VRVWDTE-----NPD---YSLRT--FTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (695)
Q Consensus 621 IrvWDl~-----t~~---~~l~~--~~gh~-~~V~sl~fspdg~~llaSgs~Dg~IriWDl 670 (695)
|.+|--. ... .+++. +..|+ ..|.+..|.++|. +++.+ +..+.|+|-
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDK 155 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECC
Confidence 9998542 111 12222 23444 5799999999987 33333 356888874
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.83 E-value=0.094 Score=59.22 Aligned_cols=124 Identities=14% Similarity=0.141 Sum_probs=68.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEE-ECCCCCee
Q 005473 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENPDYS 632 (695)
Q Consensus 554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvW-Dl~t~~~~ 632 (695)
..-....+.++|+|+++++++ ||...|+.....+.... +.-..++|.+. ..+|+-....+|.|+ +.....
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~-- 101 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEV-- 101 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-T--
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCcccc--
Confidence 344478999999999999855 88888888555444322 23357788884 456666668889996 443221
Q ss_pred EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
.+.+.-. ..+..+.. |. +|+..+ ++.|.+||+.+++.++.+... +|..|.| +++
T Consensus 102 ~k~i~~~-~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~W-s~~ 155 (443)
T PF04053_consen 102 VKSIKLP-FSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIW-SDD 155 (443)
T ss_dssp T-----S-S-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE--TT
T ss_pred ceEEcCC-cccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEE-ECC
Confidence 1222211 12333332 66 444444 448999999999999999744 3788888 764
No 350
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.81 E-value=0.44 Score=58.16 Aligned_cols=135 Identities=19% Similarity=0.222 Sum_probs=82.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----C-------------------CeEEEEeccc---------------
Q 005473 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE----S-------------------FTVKSTLEEH--------------- 596 (695)
Q Consensus 555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~----t-------------------~~~~~~l~~H--------------- 596 (695)
.+.|.+++|+||+.+++..+.+.++.+-+-. . |+....|.|.
T Consensus 109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~ 188 (1265)
T KOG1920|consen 109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA 188 (1265)
T ss_pred cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence 4459999999999999999988888765320 0 1111112211
Q ss_pred ------CCCeEEEEEcCCCCEEEEEe----CC-CeEEEEECCCCCeeEEEE-ecCCCCeEEEEEecCCCeEEEEE--eCC
Q 005473 597 ------TQWITDVRFSPSLSRLATSS----AD-RTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSC--DNN 662 (695)
Q Consensus 597 ------~~~V~~v~~spdg~~LaTgs----~D-gtIrvWDl~t~~~~l~~~-~gh~~~V~sl~fspdg~~llaSg--s~D 662 (695)
.+.-+.|+|.-||.++++.. .+ +.|+|||.. +. +... ..-.+.-.+++|-|.|..+.+.. ++|
T Consensus 189 ~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~--Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd 265 (1265)
T KOG1920|consen 189 LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA--LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSD 265 (1265)
T ss_pred ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch--hhcccCcccccccceeecCCCCeEeeeeecCCC
Confidence 11123599999999998842 24 889999987 22 1111 11123346799999887443322 356
Q ss_pred CcEEEEECCCCeEEEE----EecCCCcEEEEEEeCC
Q 005473 663 SEIRYWSINNGSCAGV----FKNFFESFVSVRVVQP 694 (695)
Q Consensus 663 g~IriWDl~tg~~v~~----~~~h~~~VtsVaf~sP 694 (695)
+.|.+|.- +|-.... +......|..++| +-
T Consensus 266 ~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~W-ns 299 (1265)
T KOG1920|consen 266 SDIVFFER-NGLRHGEFVLPFPLDEKEVEELAW-NS 299 (1265)
T ss_pred CcEEEEec-CCccccccccCCcccccchheeee-cC
Confidence 78999984 3433332 3333444788888 53
No 351
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.75 E-value=0.0038 Score=70.70 Aligned_cols=113 Identities=19% Similarity=0.351 Sum_probs=79.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEE-CCCCCeeEE
Q 005473 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD-TENPDYSLR 634 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWD-l~t~~~~l~ 634 (695)
.+.+++|-.+.+++.+|...+.|.++|++-.... .-.-.+..|..+.+.| .+.++++-. |+.|-+|| .++-+.++.
T Consensus 156 gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~ 233 (783)
T KOG1008|consen 156 GQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQ 233 (783)
T ss_pred CccccccccCcchhhcccccchhhhhhhhhhhhh-hhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHH
Confidence 3568889889999999999999999999732221 1111234556667777 566776655 99999999 554443333
Q ss_pred EEecCC----CCeEEEEEecCCCeEEEEEeCC-CcEEEEECC
Q 005473 635 TFTGHS----TTVMSLDFHPSKEDLLCSCDNN-SEIRYWSIN 671 (695)
Q Consensus 635 ~~~gh~----~~V~sl~fspdg~~llaSgs~D-g~IriWDl~ 671 (695)
.+...+ ..+..++|+|..+.+++++..| ++|+.+|+.
T Consensus 234 ~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 234 IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred HHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 333222 3489999999988888888755 689999985
No 352
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=0.042 Score=65.84 Aligned_cols=100 Identities=20% Similarity=0.262 Sum_probs=71.7
Q ss_pred CCEEEEEeCCCcEEEEECCCC-eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEE
Q 005473 567 GKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (695)
Q Consensus 567 g~~LaSgs~Dg~V~IWDl~t~-~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~s 645 (695)
+-+++.|+..|.|-..|+... +....=+.-.++|++++|+.+|.+++.|-.+|.|.+||+..++. ++.+..|..+++.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPVTG 177 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCccce
Confidence 446888888888998888653 21111123368999999999999999999999999999998664 7777766655555
Q ss_pred E---EEecCCCeEEEEEeCCCcEEEEEC
Q 005473 646 L---DFHPSKEDLLCSCDNNSEIRYWSI 670 (695)
Q Consensus 646 l---~fspdg~~llaSgs~Dg~IriWDl 670 (695)
+ .+..++. .+.+++..|. +|.+
T Consensus 178 vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 4 3444444 5668777775 5654
No 353
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.50 E-value=1.1 Score=48.39 Aligned_cols=110 Identities=12% Similarity=0.103 Sum_probs=72.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEECCC--C----eE-EEEecccCCCeEEEEEcCCCCEEEEEeCCC-eE
Q 005473 551 IPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTES--F----TV-KSTLEEHTQWITDVRFSPSLSRLATSSADR-TV 621 (695)
Q Consensus 551 l~~H~~~V~~v~fspdg~~LaSgs~D-g~V~IWDl~t--~----~~-~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg-tI 621 (695)
+..|-..-+.|+||||++.|+.+... +.|.-|++.. + .. ...+..+.+..-.++...+|.+.+++-.+| .|
T Consensus 158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v 237 (307)
T COG3386 158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRV 237 (307)
T ss_pred ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceE
Confidence 33444445789999999988877664 7788777752 1 11 112223345555677777777776554444 89
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEe-cCCCeEEEEEeCC
Q 005473 622 RVWDTENPDYSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNN 662 (695)
Q Consensus 622 rvWDl~t~~~~l~~~~gh~~~V~sl~fs-pdg~~llaSgs~D 662 (695)
.+|+.+ ++. +..+.-....+++++|- |+.+.|++++...
T Consensus 238 ~~~~pd-G~l-~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 238 VRFNPD-GKL-LGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EEECCC-CcE-EEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 999999 554 67777666788899884 5566677776644
No 354
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.47 E-value=0.39 Score=53.54 Aligned_cols=133 Identities=20% Similarity=0.215 Sum_probs=81.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------------------------------------------eEEEEe
Q 005473 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESF-------------------------------------------TVKSTL 593 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~-------------------------------------------~~~~~l 593 (695)
.|+++.|+++..-|++|...|.|.||..... .+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4889999999888999999999999844210 111222
Q ss_pred cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE-EEec------CCCCeEEEEEec-----CC--CeEEEEE
Q 005473 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-TFTG------HSTTVMSLDFHP-----SK--EDLLCSC 659 (695)
Q Consensus 594 ~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~-~~~g------h~~~V~sl~fsp-----dg--~~llaSg 659 (695)
....+.|++++.+ |-.+++.|..+|++.|.|+|.+..... .+.. ....|+++.|.. |+ ..++++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3346889999997 567999999999999999987664222 1222 234688888862 21 1356688
Q ss_pred eCCCcEEEEECCC---C----eEEEEEecCCCcEEEEE
Q 005473 660 DNNSEIRYWSINN---G----SCAGVFKNFFESFVSVR 690 (695)
Q Consensus 660 s~Dg~IriWDl~t---g----~~v~~~~~h~~~VtsVa 690 (695)
...|.+.+|.+.- + +.+.....+.++|..|.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~ 199 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII 199 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE
Confidence 8899999998751 2 22223335667777665
No 355
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.44 E-value=0.14 Score=61.35 Aligned_cols=126 Identities=10% Similarity=0.097 Sum_probs=83.3
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCeEEEEecccCCC-eEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 005473 566 DGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (695)
Q Consensus 566 dg~~LaSg-s~Dg~V~IWDl~t~~~~~~l~~H~~~-V~~v~~sp-----dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g 638 (695)
+.++|+.- .....|+-.|++.|+.+..+..|... |.+++-.. +....+.|-.+..|..||.|-....+..-..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 44444443 45688999999999999999887654 55554321 2345677878899999999975422222112
Q ss_pred ----CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 639 ----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 639 ----h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
.....+|++-..+| .||.|+.+|.||+||--....-..|.+-..+|+.|.. +.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDv-t~ 628 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDV-TA 628 (794)
T ss_pred cccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEe-cC
Confidence 22345666655555 5779999999999994332333445577789999887 54
No 356
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.44 E-value=0.048 Score=55.21 Aligned_cols=105 Identities=19% Similarity=0.179 Sum_probs=72.3
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEE-EcCCCCEEEEEeCCCcEEEEEC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCH-FSPDGKLLATGGHDKKAVLWCT 584 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~-fspdg~~LaSgs~Dg~V~IWDl 584 (695)
..-+.+|+.++.|.+|..+......+++. .-...|.|.. --.++.+.++++.||.|+.|++
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~------------------s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~ 131 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVC------------------SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNI 131 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhh------------------cccccceeccccccccceeEEeccCCceeeecc
Confidence 36689999999999997653221111111 1111222222 2335568889999999999999
Q ss_pred CCCeEEEEecccC-CCeEEEEEcCCCCEEEEE--eCCCeEEEEECCC
Q 005473 585 ESFTVKSTLEEHT-QWITDVRFSPSLSRLATS--SADRTVRVWDTEN 628 (695)
Q Consensus 585 ~t~~~~~~l~~H~-~~V~~v~~spdg~~LaTg--s~DgtIrvWDl~t 628 (695)
...+.+.....|+ ..+.....+..+++|+++ |.|..++.|++..
T Consensus 132 ~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 132 KPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 9999888888887 666666666667788777 8888888888864
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=2 Score=47.58 Aligned_cols=133 Identities=13% Similarity=0.088 Sum_probs=90.7
Q ss_pred EEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEE-E---ecccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCC
Q 005473 559 ESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKS-T---LEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPD 630 (695)
Q Consensus 559 ~~v~fspdg~~LaSgs-~Dg~V~IWDl~t~~~~~-~---l~~H~~~V~~v~~spdg~~LaTgs~D---gtIrvWDl~t~~ 630 (695)
..++++|+|..++.+. .++.|.+.|..+....+ . ...-...-..+.++|++.++...... +.+.+.|..++.
T Consensus 163 ~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 163 TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence 8899999999776665 68999999987665553 1 01112334578899999977665443 589999998865
Q ss_pred eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCC---cEEEEEE
Q 005473 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFE---SFVSVRV 691 (695)
Q Consensus 631 ~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~---~VtsVaf 691 (695)
.....+..-......+.++|+|..+.+.-+..+.|.+.|..+...+..+..+.. .+..+++
T Consensus 243 v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~ 306 (381)
T COG3391 243 VTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAI 306 (381)
T ss_pred EEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccc
Confidence 422212221114677899999997776656678999999998887777664433 3445554
No 358
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.36 E-value=0.26 Score=54.63 Aligned_cols=108 Identities=13% Similarity=0.020 Sum_probs=71.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEE
Q 005473 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMS 645 (695)
Q Consensus 567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~-~~V~s 645 (695)
+..++.++.+|.+..+|..+++.+..... +....+.. .+..|+.++.|+.|..+|..+++. +....... ....+
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~s 330 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVE-LWSQSDLLHRLLTA 330 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcE-EEcccccCCCcccC
Confidence 45677777899999999999988765532 11112222 356788888999999999998764 33222111 11222
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF 682 (695)
Q Consensus 646 l~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h 682 (695)
..+. + . .++.++.||.|+++|..+|+.+..++.+
T Consensus 331 p~v~-~-g-~l~v~~~~G~l~~ld~~tG~~~~~~~~~ 364 (394)
T PRK11138 331 PVLY-N-G-YLVVGDSEGYLHWINREDGRFVAQQKVD 364 (394)
T ss_pred CEEE-C-C-EEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 3332 2 3 4557888999999999999988877643
No 359
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.32 E-value=0.27 Score=57.56 Aligned_cols=126 Identities=11% Similarity=0.027 Sum_probs=73.9
Q ss_pred CeEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC-C--------
Q 005473 557 KVESCHFSPDGKLLATGG------HDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R-------- 619 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs------~Dg--~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D-g-------- 619 (695)
.+...+++|||+.++..- .|+ .|.+++.. +.......+. ..++-.|+|+|..|++.+.. .
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 578899999999877655 244 44444542 2232223332 37889999998887776532 2
Q ss_pred ---eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEE---EECCCCe-EE---EEEe-cCCCcEEE
Q 005473 620 ---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY---WSINNGS-CA---GVFK-NFFESFVS 688 (695)
Q Consensus 620 ---tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Iri---WDl~tg~-~v---~~~~-~h~~~Vts 688 (695)
.+.+.+++.+.. .. ...+.|.++.|+|||..+++.. +|.|++ -....|+ .+ ..+. .-.+.+.+
T Consensus 428 ~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 428 ATGQLARTPVDASAV-AS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred CCceEEEEeccCchh-hh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 233334433221 11 2345799999999999887665 467776 3333443 11 1122 23334577
Q ss_pred EEE
Q 005473 689 VRV 691 (695)
Q Consensus 689 Vaf 691 (695)
+.|
T Consensus 502 l~W 504 (591)
T PRK13616 502 LDW 504 (591)
T ss_pred ceE
Confidence 878
No 360
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.30 E-value=0.58 Score=54.87 Aligned_cols=129 Identities=19% Similarity=0.220 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCEEEEEeCC-CcEEEE-----------ECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEE--
Q 005473 558 VESCHFSPDGKLLATGGHD-KKAVLW-----------CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV-- 623 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~D-g~V~IW-----------Dl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrv-- 623 (695)
.++-.|+|||+.|++.... ..+++. +++.++... ...+.|..++|+|||.+|+... ++.|+|
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEE
Confidence 7789999998877776532 223333 343333222 2356799999999999887765 577777
Q ss_pred -EECCCCCeeE---EEE-ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec--CCCcEEEEEE
Q 005473 624 -WDTENPDYSL---RTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN--FFESFVSVRV 691 (695)
Q Consensus 624 -WDl~t~~~~l---~~~-~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~--h~~~VtsVaf 691 (695)
-....+...+ ..+ .+....+.+++|..++..++.+.+.+..|+..++. |.....+.+ ...+|.+|+=
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa 548 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAA 548 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEec
Confidence 4433333222 112 22334468899999987333322233334444444 322222222 2455665553
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.67 Score=51.38 Aligned_cols=116 Identities=14% Similarity=0.178 Sum_probs=85.4
Q ss_pred eEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCeeE
Q 005473 558 VESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL 633 (695)
Q Consensus 558 V~~v~fspdg~~LaSg-s~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~---DgtIrvWDl~t~~~~l 633 (695)
-.+++++++++.++.. ..+..|.+.|..+.+++....- ......++++|++..+..+.. +++|.+.|..+.+...
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 4578888888855544 4468999999887776655532 225678999999887766654 6889999998877644
Q ss_pred EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEE
Q 005473 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676 (695)
Q Consensus 634 ~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v 676 (695)
....+- .. ..+++.|+|..++++-..++.|.+.|.......
T Consensus 155 ~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 155 TIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred EEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 433332 23 889999999988877778999999997765554
No 362
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.24 E-value=0.33 Score=55.33 Aligned_cols=117 Identities=10% Similarity=0.098 Sum_probs=78.3
Q ss_pred CCCeEEEEEcCC----CCEEEEEeCCCcEEEEECC-----CCeEEEEeccc---CCCe--EEEEEcCCCCEEEEEeCCCe
Q 005473 555 TSKVESCHFSPD----GKLLATGGHDKKAVLWCTE-----SFTVKSTLEEH---TQWI--TDVRFSPSLSRLATSSADRT 620 (695)
Q Consensus 555 ~~~V~~v~fspd----g~~LaSgs~Dg~V~IWDl~-----t~~~~~~l~~H---~~~V--~~v~~spdg~~LaTgs~Dgt 620 (695)
-..|..+.|.|- .-.|+..-+.+.|.||-+. ..+.+..-..+ ..+| -.+.|+|....|+.-.....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 345899999984 3245555678889999764 22322221111 1122 35679998888876655555
Q ss_pred EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (695)
Q Consensus 621 IrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~ 671 (695)
-.+++++.....++.-..-.+.|.|.+|..||..++++-+..=.-+|||-.
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 566777665544554445568899999999999999888776678899854
No 363
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.24 E-value=0.051 Score=59.44 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=68.8
Q ss_pred cCCCCEEEEEe---------CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473 564 SPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (695)
Q Consensus 564 spdg~~LaSgs---------~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~ 634 (695)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|..++... ++.|++++..++....-
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 56777666532 236789999999776544433 67788999999999998885 67899999877643222
Q ss_pred EEec-------C---------CCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473 635 TFTG-------H---------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (695)
Q Consensus 635 ~~~g-------h---------~~~V~sl~fspdg~~llaSgs~Dg~IriWDl 670 (695)
+..| - -+.-..+-|+||++.|++.--.+..|+.+.+
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 2222 1 1123568899999988888777877777765
No 364
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.13 E-value=0.91 Score=47.35 Aligned_cols=144 Identities=12% Similarity=0.197 Sum_probs=80.1
Q ss_pred EEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccc-CCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (695)
Q Consensus 549 ~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~~~~~~l~~H-~~~V~~v~~spdg~~LaTgs~DgtIrvWDl 626 (695)
+.+.+-...|..++|+|+.+ ++++....+.|..++.. ++.++.+.-. .+-...|++.-++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 44556566699999999755 66666677888888874 6777766433 356889999877766666656899999998
Q ss_pred CCCC--eeE---EEEe-----cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC---CeEEEE--Ee------cCCCc
Q 005473 627 ENPD--YSL---RTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGV--FK------NFFES 685 (695)
Q Consensus 627 ~t~~--~~l---~~~~-----gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t---g~~v~~--~~------~h~~~ 685 (695)
.... ... ..+. .+...+-.|+|++.+..++++.- ..-.+||.++. ...+.. .. .+...
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCccceeeccccccccccceecc
Confidence 4322 111 1111 24456899999999887886654 44455555542 222211 11 23445
Q ss_pred EEEEEEeCCC
Q 005473 686 FVSVRVVQPR 695 (695)
Q Consensus 686 VtsVaf~sPd 695 (695)
+.+++| ||.
T Consensus 173 ~S~l~~-~p~ 181 (248)
T PF06977_consen 173 LSGLSY-DPR 181 (248)
T ss_dssp --EEEE-ETT
T ss_pred ccceEE-cCC
Confidence 677887 773
No 365
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.09 E-value=0.89 Score=49.74 Aligned_cols=141 Identities=19% Similarity=0.206 Sum_probs=81.2
Q ss_pred CCCCeEEEEEcCCCCEEEE--EeCC---CcEEEEECCCCeEEEEecc-cCCCe---EEEEEc-CCC-CEEEEEeCCCeEE
Q 005473 554 STSKVESCHFSPDGKLLAT--GGHD---KKAVLWCTESFTVKSTLEE-HTQWI---TDVRFS-PSL-SRLATSSADRTVR 622 (695)
Q Consensus 554 H~~~V~~v~fspdg~~LaS--gs~D---g~V~IWDl~t~~~~~~l~~-H~~~V---~~v~~s-pdg-~~LaTgs~DgtIr 622 (695)
-...+..+.|.++++.|+. ...+ ..+.++|..++++...++. ..+.| ..+.|. +++ .+|.....||.-+
T Consensus 182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 3445889999999983333 3333 3466778877766544432 23333 355554 554 4555566777655
Q ss_pred EEECCCCCeeEEEEecCCCCeEE-EEEecCCCeEEEEEeCCC----cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473 623 VWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 623 vWDl~t~~~~l~~~~gh~~~V~s-l~fspdg~~llaSgs~Dg----~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
||-++......+.+....-.|.. +.|++++..+++++..++ .|+.-+++.+..+..+.........+.| +|+
T Consensus 262 ly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~-Spd 338 (353)
T PF00930_consen 262 LYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASF-SPD 338 (353)
T ss_dssp EEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE--TT
T ss_pred EEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEE-CCC
Confidence 54443323334566655566755 678899888888888643 5666666633455555544333357888 875
No 366
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.07 E-value=0.44 Score=48.67 Aligned_cols=135 Identities=10% Similarity=0.097 Sum_probs=81.4
Q ss_pred CeEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEC
Q 005473 557 KVESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDT 626 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs~D---------g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~L-aTgs~DgtIrvWDl 626 (695)
..+.-..+|+|++++-.-.| |.++.|-.. ..+..+...-+.-..++|+.+.+.+ ++-+.+-+|.-||.
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 45666778999984433333 233333221 1111222223344568888776554 55677888988884
Q ss_pred --CCCCe----eEEEEecC---CC-CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 627 --ENPDY----SLRTFTGH---ST-TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 627 --~t~~~----~l~~~~gh---~~-~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
.++.. .+..++.. .. .--.+++..+|. |++++-..++|..+|..+|+.+.+++-.+..|+|++|.-|
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 33321 12222210 00 112234455666 7778888999999999999999999999999999999433
No 367
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=0.041 Score=65.91 Aligned_cols=82 Identities=13% Similarity=0.150 Sum_probs=63.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEE
Q 005473 609 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVS 688 (695)
Q Consensus 609 g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~Vts 688 (695)
+..++.|+..|.|-..|+...-.+...-..-.++|++++|+.+|. +++.|-.+|.|.+||+..++.++.+..|..++++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 457888888899999988753211122222347899999999988 6778999999999999999999999988777776
Q ss_pred EEE
Q 005473 689 VRV 691 (695)
Q Consensus 689 Vaf 691 (695)
|-+
T Consensus 178 vi~ 180 (1206)
T KOG2079|consen 178 VIF 180 (1206)
T ss_pred EEE
Confidence 654
No 368
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.74 E-value=0.46 Score=49.80 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=45.0
Q ss_pred EEcCCCCEEEEEeCC-----CcEEEEECCCC-eEEEEecccCCCeEEEEEcCCCCEEEEEe
Q 005473 562 HFSPDGKLLATGGHD-----KKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSS 616 (695)
Q Consensus 562 ~fspdg~~LaSgs~D-----g~V~IWDl~t~-~~~~~l~~H~~~V~~v~~spdg~~LaTgs 616 (695)
.||+||++|+..-+| |.|-|||.+.+ ..+..+..|.-.-..+.|.+||+.++.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 589999999987665 78999999743 35567778887888999999999988774
No 369
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.67 E-value=0.32 Score=53.92 Aligned_cols=109 Identities=7% Similarity=0.002 Sum_probs=70.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEecccC--CCeE-----EEEEcC--CCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT--QWIT-----DVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (695)
Q Consensus 567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~--~~V~-----~v~~sp--dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~ 637 (695)
+..+++++.++.|.-+|.++++.+....... ..+. .+.-.| ++..++.++.++.|+.+|.++++. +....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~-~W~~~ 147 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEV-AWQTK 147 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCC-ccccc
Confidence 5577778888999999999999887764322 0000 011111 356777888899999999998875 44433
Q ss_pred cCCCCeEE-EEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473 638 GHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 638 gh~~~V~s-l~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~ 680 (695)
.. +.+.+ ..+. + . .++.++.++.|+.+|..+|+.+-.+.
T Consensus 148 ~~-~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 148 VA-GEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred CC-CceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeec
Confidence 22 22222 2222 3 3 34456778999999999999887665
No 370
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.66 E-value=1.2 Score=49.08 Aligned_cols=135 Identities=13% Similarity=0.166 Sum_probs=74.4
Q ss_pred CeEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--CeE--EEEecccCCCeEEEEEcCCCCEEEEEeCCCe
Q 005473 557 KVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs-----------~Dg-~V~IWDl~t--~~~--~~~l~~H~~~V~~v~~spdg~~LaTgs~Dgt 620 (695)
....|+|.++|+++++-. ..+ .|.+++-.+ ++. ...+.......+.|++.+++ +++ ++.+..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 367899999999777653 223 676665432 332 23443334456889998887 444 444544
Q ss_pred EEEEECCCC-----C--eeEEEEec----CCCCeEEEEEecCCCeEEEEEeC------------------CCcEEEEECC
Q 005473 621 VRVWDTENP-----D--YSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSIN 671 (695)
Q Consensus 621 IrvWDl~t~-----~--~~l~~~~g----h~~~V~sl~fspdg~~llaSgs~------------------Dg~IriWDl~ 671 (695)
+++.|.... + ..+..+.. +...+..++|.|||..+++.|+. .|.|.-+|.+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 445565421 1 11222322 12347789999999755544421 1456666666
Q ss_pred CCeEEEEEecCCCcEEEEEEeCCC
Q 005473 672 NGSCAGVFKNFFESFVSVRVVQPR 695 (695)
Q Consensus 672 tg~~v~~~~~h~~~VtsVaf~sPd 695 (695)
+++......++..+ ..++| +|+
T Consensus 173 g~~~e~~a~G~rnp-~Gl~~-d~~ 194 (367)
T TIGR02604 173 GGKLRVVAHGFQNP-YGHSV-DSW 194 (367)
T ss_pred CCeEEEEecCcCCC-ccceE-CCC
Confidence 55443333344433 56777 663
No 371
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.65 E-value=0.097 Score=53.10 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=63.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEE-EEecccCCCeEEE-EEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCe
Q 005473 567 GKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDV-RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTV 643 (695)
Q Consensus 567 g~~LaSgs~Dg~V~IWDl~t~~~~-~~l~~H~~~V~~v-~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~-~~V 643 (695)
+..+++|+.||.|.+|...-.... ..+..-...|.++ .--.++.+..+++.|+.||.|++.-.+. +-....|. ..+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFESG 148 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCce-eeeeccccCCCc
Confidence 456889999999999987622111 1111112223222 2222455788999999999999986554 55555565 344
Q ss_pred EEEEEecCCCeEEEEE--eCCCcEEEEECCC
Q 005473 644 MSLDFHPSKEDLLCSC--DNNSEIRYWSINN 672 (695)
Q Consensus 644 ~sl~fspdg~~llaSg--s~Dg~IriWDl~t 672 (695)
..+.....++ +++.. +.|..++.|++..
T Consensus 149 e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVGSDE-FLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEecCCc-eEEeeccccchhhhhcchhh
Confidence 4444444444 45555 6778888888764
No 372
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=0.31 Score=59.08 Aligned_cols=135 Identities=13% Similarity=0.084 Sum_probs=85.7
Q ss_pred CeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCeEEE-----------EecccCCCeEEEEEcCCCC-EEEEEeCCCeEE
Q 005473 557 KVESCHFSPDGKLLAT--GGHDKKAVLWCTESFTVKS-----------TLEEHTQWITDVRFSPSLS-RLATSSADRTVR 622 (695)
Q Consensus 557 ~V~~v~fspdg~~LaS--gs~Dg~V~IWDl~t~~~~~-----------~l~~H~~~V~~v~~spdg~-~LaTgs~DgtIr 622 (695)
+|..+...+|+++.++ .+++-.|..||+++..... +.......+.|+.|.|.-. ..+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 3455555667665433 3445578899997543211 1222345677899998633 356667899999
Q ss_pred EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC----CCcEEEEEEeCC
Q 005473 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF----FESFVSVRVVQP 694 (695)
Q Consensus 623 vWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h----~~~VtsVaf~sP 694 (695)
|.-+......+..+. ....++|++|+|.|+- ++.|...|+|.-|... .+....+.+. -..|.+|+|+.+
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQ-l~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQ-LFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEEeccccce-eeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecc
Confidence 988765433233322 3456899999999984 5588889999888754 4444444321 357888888543
No 373
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.50 E-value=0.23 Score=55.71 Aligned_cols=127 Identities=14% Similarity=0.142 Sum_probs=82.1
Q ss_pred cCCCCEEE-EEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCC-------EEEEEeCCCeEEEEECCCCCe-eEE
Q 005473 564 SPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-------RLATSSADRTVRVWDTENPDY-SLR 634 (695)
Q Consensus 564 spdg~~La-Sgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~-------~LaTgs~DgtIrvWDl~t~~~-~l~ 634 (695)
..+.++|+ ++..-..++-.|++.|+.+..+.-|.. |.-+.+.|+.. .-+.|-.|..|.-||.|-... .+.
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 33555444 455556788889999999999988776 77888888643 234566788999999985443 333
Q ss_pred EEecCCC--CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473 635 TFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 635 ~~~gh~~--~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf 691 (695)
...+|.- .-.--||...+.-.||.|+.+|.||+||--....-..|.+...+|+.|..
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdv 479 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDV 479 (644)
T ss_pred eeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEe
Confidence 4444421 11112233344457889999999999996322333445566677766654
No 374
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.25 E-value=0.11 Score=39.78 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 005473 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589 (695)
Q Consensus 555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~ 589 (695)
...|.+++|+|...+||.|..||.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 345999999999999999999999999998 4443
No 375
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.19 E-value=1.1 Score=46.68 Aligned_cols=121 Identities=17% Similarity=0.112 Sum_probs=73.9
Q ss_pred CCCCEEEEEeCCCcEEEEECC-CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE--------
Q 005473 565 PDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-------- 635 (695)
Q Consensus 565 pdg~~LaSgs~Dg~V~IWDl~-t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~-------- 635 (695)
..++.|+.|+.+| |.++++. ........ +...|..+...++-+.|++-+ |+.++++|+..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3577899999888 9999983 33333333 233499999999877776665 599999998764321100
Q ss_pred -----EecCCCCeEEEE--EecCCCeEEEEEeCCCcEEEEECCCC-----eEEEEEecCCCcEEEEEE
Q 005473 636 -----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 636 -----~~gh~~~V~sl~--fspdg~~llaSgs~Dg~IriWDl~tg-----~~v~~~~~h~~~VtsVaf 691 (695)
.......|...+ -...+...++.+- ...|.+|..... +.++.+... +.+.+|+|
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~ 146 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAF 146 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcC-CCcEEEEE
Confidence 111223344443 1233444454443 558888887653 455666544 66788888
No 376
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.12 E-value=1.1 Score=50.78 Aligned_cols=103 Identities=14% Similarity=0.053 Sum_probs=51.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEE-ECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473 558 VESCHFSPDGKLLATGGHDKKAVLW-CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~Dg~V~IW-Dl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~ 636 (695)
-...+|...++ +|+-....+|.|+ +++ .+....+.. ...+..|-. |.+|...+.+ .|.+||..+++. ++.+
T Consensus 71 g~~~vw~~~n~-yAv~~~~~~I~I~kn~~-~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~-i~~i 142 (443)
T PF04053_consen 71 GLSFVWSSRNR-YAVLESSSTIKIYKNFK-NEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKL-IRRI 142 (443)
T ss_dssp -SEEEE-TSSE-EEEE-TTS-EEEEETTE-E-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--E-EEEE
T ss_pred eeEEEEecCcc-EEEEECCCeEEEEEcCc-cccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcce-eeEE
Confidence 45678887544 6666667888886 332 222123321 122333322 6666666544 799999988664 6666
Q ss_pred ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t 672 (695)
... .|..|.|+++|..+. ..+ +..|.|++.+.
T Consensus 143 ~v~--~vk~V~Ws~~g~~va-l~t-~~~i~il~~~~ 174 (443)
T PF04053_consen 143 DVS--AVKYVIWSDDGELVA-LVT-KDSIYILKYNL 174 (443)
T ss_dssp SS---E-EEEEE-TTSSEEE-EE--S-SEEEEEE-H
T ss_pred ecC--CCcEEEEECCCCEEE-EEe-CCeEEEEEecc
Confidence 532 388899999887444 444 44677777553
No 377
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.78 E-value=0.026 Score=66.26 Aligned_cols=129 Identities=11% Similarity=0.125 Sum_probs=82.6
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC--CCeEEE-----EecccCCCeEEEEEcC---CCCEEEEEeCC
Q 005473 550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE--SFTVKS-----TLEEHTQWITDVRFSP---SLSRLATSSAD 618 (695)
Q Consensus 550 ~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~--t~~~~~-----~l~~H~~~V~~v~~sp---dg~~LaTgs~D 618 (695)
.+++..+.|-.++|.. +...++ -.-|.+.|||++ .|+... ........+.-|.|+| +..++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 3566777888888854 222232 334678899875 233222 2222345556677776 45566667778
Q ss_pred CeEEEEECCCCCeeEEEEecCCCCeEEEE-----------EecCCCeEEEEEeCCCcEEEEEC-----CCCeEEEEEecC
Q 005473 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLD-----------FHPSKEDLLCSCDNNSEIRYWSI-----NNGSCAGVFKNF 682 (695)
Q Consensus 619 gtIrvWDl~t~~~~l~~~~gh~~~V~sl~-----------fspdg~~llaSgs~Dg~IriWDl-----~tg~~v~~~~~h 682 (695)
++|++....+.. ...+.+|..+++.++ ++|||. +|+....||.+++|-+ +.-.|+...+.|
T Consensus 205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph 281 (1283)
T KOG1916|consen 205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH 281 (1283)
T ss_pred CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence 888887776533 244566776665543 589998 6678888999888865 344678888888
Q ss_pred C
Q 005473 683 F 683 (695)
Q Consensus 683 ~ 683 (695)
+
T Consensus 282 d 282 (1283)
T KOG1916|consen 282 D 282 (1283)
T ss_pred C
Confidence 7
No 378
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.73 E-value=2.6 Score=44.04 Aligned_cols=136 Identities=14% Similarity=0.090 Sum_probs=81.1
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCCeeEE
Q 005473 557 KVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-TENPDYSLR 634 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD-l~t~~~~l~ 634 (695)
.+.+.+++++++.++... .++.-.||-...+.....+. ....+..-.|++++...+....+..++++. ...+.....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 588999999999776655 23333344333333333321 223788889999977766666666777773 333332122
Q ss_pred EEecC--CCCeEEEEEecCCCeEEEEE--eCCCcEEEEECC---CC------eEEEEEecCCCcEEEEEEeCC
Q 005473 635 TFTGH--STTVMSLDFHPSKEDLLCSC--DNNSEIRYWSIN---NG------SCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 635 ~~~gh--~~~V~sl~fspdg~~llaSg--s~Dg~IriWDl~---tg------~~v~~~~~h~~~VtsVaf~sP 694 (695)
..... .+.|.++.++|||..+.+.. ..++.|.|--+. .+ ..+.........|++++| .+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W-~~ 175 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW-SD 175 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee-cC
Confidence 22211 12799999999999877665 335667766553 23 122222233568889999 54
No 379
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.66 E-value=6.5 Score=42.75 Aligned_cols=119 Identities=12% Similarity=0.097 Sum_probs=70.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEeccc----------CCCeEEEEEcCCCCEEEEE---eCCC------
Q 005473 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEH----------TQWITDVRFSPSLSRLATS---SADR------ 619 (695)
Q Consensus 561 v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~--~~l~~H----------~~~V~~v~~spdg~~LaTg---s~Dg------ 619 (695)
-.+...+..++--+.+|.|+--|+...... ..+.-- .+.---+++++..++|++- +.++
T Consensus 189 ~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpg 268 (342)
T PF06433_consen 189 PAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPG 268 (342)
T ss_dssp -EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-E
T ss_pred cceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCc
Confidence 344444444444678888888888655432 122100 1222346777755555443 1222
Q ss_pred -eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEE-EeCCCcEEEEECCCCeEEEEEec
Q 005473 620 -TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS-CDNNSEIRYWSINNGSCAGVFKN 681 (695)
Q Consensus 620 -tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaS-gs~Dg~IriWDl~tg~~v~~~~~ 681 (695)
.|.+||+.+.+. +..+.. ...+.+|..+.+...+|++ ...++.|.|||..+|+.+++++.
T Consensus 269 teVWv~D~~t~kr-v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 269 TEVWVYDLKTHKR-VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEEETTTTEE-EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred eEEEEEECCCCeE-EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 488999998765 655552 2357799999887766655 45689999999999999999984
No 380
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=93.65 E-value=3.1 Score=37.88 Aligned_cols=90 Identities=16% Similarity=0.032 Sum_probs=59.8
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
+-|..||.|..|++|.-. ..+..+.. ++.|++++-... ..++.|..+|+|-||+-
T Consensus 16 ~eLlvGs~D~~IRvf~~~---------------------e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~-- 70 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD---------------------EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR-- 70 (111)
T ss_pred ceEEEecCCcEEEEEeCC---------------------cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--
Confidence 678899999999999321 12222222 345777777665 56888899999999985
Q ss_pred CeEEEEecccCCCeEEEEEcC-C--C-CEEEEEeCCCeEE
Q 005473 587 FTVKSTLEEHTQWITDVRFSP-S--L-SRLATSSADRTVR 622 (695)
Q Consensus 587 ~~~~~~l~~H~~~V~~v~~sp-d--g-~~LaTgs~DgtIr 622 (695)
...+..++.. ..++++++.. + | ..|++|-.+|.|-
T Consensus 71 ~~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3444455443 3366666544 2 2 3689998888874
No 381
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.53 E-value=0.13 Score=60.74 Aligned_cols=119 Identities=20% Similarity=0.272 Sum_probs=75.1
Q ss_pred CCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEE-----------EcCCCCEEEEEeCCCeE
Q 005473 556 SKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR-----------FSPSLSRLATSSADRTV 621 (695)
Q Consensus 556 ~~V~~v~fsp---dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~-----------~spdg~~LaTgs~DgtI 621 (695)
..+.-|.|+| +.-++..+..+++|++.++.+... ..+++|...+++++ ++|||..|++++.||.+
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 3345555554 566788888889999877654332 34556776655543 58999999999999999
Q ss_pred EEEECCCCC----eeEEEEecCCCC--eEEEEEecC-------CC--eEEEEEeCCCcEEEEECCCCeEE
Q 005473 622 RVWDTENPD----YSLRTFTGHSTT--VMSLDFHPS-------KE--DLLCSCDNNSEIRYWSINNGSCA 676 (695)
Q Consensus 622 rvWDl~t~~----~~l~~~~gh~~~--V~sl~fspd-------g~--~llaSgs~Dg~IriWDl~tg~~v 676 (695)
++|-+--.+ .|+..+..|.+. |+.+ |+.. +. .+|.+...+..+++|....-+|+
T Consensus 260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 260 GFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 888653111 245566666532 3333 3221 11 23444556778999998777776
No 382
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.23 E-value=5.6 Score=41.78 Aligned_cols=130 Identities=13% Similarity=0.053 Sum_probs=79.0
Q ss_pred eeEEEecCCC-CCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEecc-cCCCeEEEEEcCCCCEEEEEeCCCeE
Q 005473 546 TEFQLIPAST-SKVESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTV 621 (695)
Q Consensus 546 ~~v~~l~~H~-~~V~~v~fspdg~~LaSgs~Dg--~V~IWDl~t~~~~~~l~~-H~~~V~~v~~spdg~~LaTgs~DgtI 621 (695)
..+..+.... ...-.+.|..+|.++-+.+.-| .|+.+|+.+++......- ....=..|+... +++..-.-.++.+
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeE
Confidence 3444444322 2345788877888888888766 788999999987655432 122223444443 3444555678999
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec
Q 005473 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN 681 (695)
Q Consensus 622 rvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~ 681 (695)
.+||..+-+. +.++.- .+.-+.++ .|+..+++|-+ ...|+++|..+.+.++.+..
T Consensus 113 f~yd~~tl~~-~~~~~y-~~EGWGLt--~dg~~Li~SDG-S~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 113 FVYDPNTLKK-IGTFPY-PGEGWGLT--SDGKRLIMSDG-SSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp EEEETTTTEE-EEEEE--SSS--EEE--ECSSCEEEE-S-SSEEEEE-TTT-SEEEEEE-
T ss_pred EEEccccceE-EEEEec-CCcceEEE--cCCCEEEEECC-ccceEEECCcccceEEEEEE
Confidence 9999998654 666653 35566776 45676775655 56899999888777766653
No 383
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.07 E-value=3.1 Score=47.70 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecccCCC--eEEEEEcC--CCCEEEEEe---------CCCeEEEEECCCCCeeEE
Q 005473 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--ITDVRFSP--SLSRLATSS---------ADRTVRVWDTENPDYSLR 634 (695)
Q Consensus 568 ~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~--V~~v~~sp--dg~~LaTgs---------~DgtIrvWDl~t~~~~l~ 634 (695)
..++.++.|+.|+-+|.++++.+..+...... -..+.-+| .+.+++.++ .++.|..+|..+++. +.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~-~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKL-LW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCce-ee
Confidence 57778888999999999999998877543221 11122222 134555553 368899999998875 44
Q ss_pred EEecC-C-------------------CCe-EEEEEecCCCeEEEEEeCCC------------------cEEEEECCCCeE
Q 005473 635 TFTGH-S-------------------TTV-MSLDFHPSKEDLLCSCDNNS------------------EIRYWSINNGSC 675 (695)
Q Consensus 635 ~~~gh-~-------------------~~V-~sl~fspdg~~llaSgs~Dg------------------~IriWDl~tg~~ 675 (695)
.+... . ..| .+..+.+.+. +++.++.++ .|..+|+.+|+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 33221 1 011 1234444444 344555454 799999999998
Q ss_pred EEEEe
Q 005473 676 AGVFK 680 (695)
Q Consensus 676 v~~~~ 680 (695)
+-.+.
T Consensus 269 ~W~~~ 273 (488)
T cd00216 269 KWFYQ 273 (488)
T ss_pred EEEee
Confidence 87765
No 384
>PHA02713 hypothetical protein; Provisional
Probab=93.06 E-value=0.87 Score=53.17 Aligned_cols=74 Identities=4% Similarity=0.020 Sum_probs=47.3
Q ss_pred CCCEEEEEeCC------CeEEEEECCC-CCe-eEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEE
Q 005473 608 SLSRLATSSAD------RTVRVWDTEN-PDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAG 677 (695)
Q Consensus 608 dg~~LaTgs~D------gtIrvWDl~t-~~~-~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~ 677 (695)
++.+.+.|+.+ ..|..||..+ ... .+..+......+..+.+ + ..|++.|+.|| .|..||..+.+...
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~-~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--D-NTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--C-CEEEEEeeecceeehhhcCcccccccc
Confidence 45667777754 2467899987 443 23333333233333333 3 35888999888 89999999988777
Q ss_pred EEecCCC
Q 005473 678 VFKNFFE 684 (695)
Q Consensus 678 ~~~~h~~ 684 (695)
....|+.
T Consensus 540 ~~~~~~~ 546 (557)
T PHA02713 540 ICHQHSN 546 (557)
T ss_pred hhhhcCC
Confidence 6666654
No 385
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.03 E-value=6.1 Score=42.41 Aligned_cols=120 Identities=11% Similarity=0.094 Sum_probs=71.8
Q ss_pred CCEEEEEeC----------CCcEEEEECCCC-----eEEEE-ecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 005473 567 GKLLATGGH----------DKKAVLWCTESF-----TVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (695)
Q Consensus 567 g~~LaSgs~----------Dg~V~IWDl~t~-----~~~~~-l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~ 630 (695)
..+|+.|.. .|.|.++++... +.... -....++|++|+-. .+ +|+.+. ++.|++|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence 457776653 288999999874 22211 13457899999877 33 454443 5889999998877
Q ss_pred -eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEe--cCCCcEEEEEEe
Q 005473 631 -YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK--NFFESFVSVRVV 692 (695)
Q Consensus 631 -~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~--~h~~~VtsVaf~ 692 (695)
.....+......|+++.... + +++.|+.-..|.++.++. +..+..+. ....+|+++.|+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~--~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l 181 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFK--N-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFL 181 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEET--T-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE
T ss_pred cchhhheecceEEEEEEeccc--c-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEe
Confidence 42333333334677777763 3 666888888888875543 33233322 334567777763
No 386
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.85 E-value=1.5 Score=52.63 Aligned_cols=78 Identities=26% Similarity=0.357 Sum_probs=55.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCC----------CeE--E-EEe--------cccCCCeEEEEEcCC---CCEE
Q 005473 557 KVESCHFSPDGKLLATGGHDKKAVLWCTES----------FTV--K-STL--------EEHTQWITDVRFSPS---LSRL 612 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t----------~~~--~-~~l--------~~H~~~V~~v~~spd---g~~L 612 (695)
.|..|.++++|++|+..|..| |.|-.+.. ++. . +++ ..+...|..+.|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 588999999999999998766 44444421 111 1 111 134567999999995 5788
Q ss_pred EEEeCCCeEEEEECCCCCeeEEE
Q 005473 613 ATSSADRTVRVWDTENPDYSLRT 635 (695)
Q Consensus 613 aTgs~DgtIrvWDl~t~~~~l~~ 635 (695)
+.-..|+++|+||+.....+..+
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~~v 187 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPWQV 187 (717)
T ss_pred EEEecCCEEEEEecCCCCCCeEE
Confidence 88889999999999866544433
No 387
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.80 E-value=2.2 Score=45.77 Aligned_cols=135 Identities=15% Similarity=0.238 Sum_probs=68.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 005473 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (695)
Q Consensus 553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~ 632 (695)
.-.+.+..+..++||++++++.....+.-||--...-...-+.-...|..|.|.|++.+.+.+ ..|.|++=|....
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~--- 217 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD--- 217 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE---
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCC---
Confidence 444678999999999999998766666678754322222233346789999999997776655 8888988872221
Q ss_pred EEEEec-------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe---cCCCcEEEEEEeCC
Q 005473 633 LRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---NFFESFVSVRVVQP 694 (695)
Q Consensus 633 l~~~~g-------h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~---~h~~~VtsVaf~sP 694 (695)
..++.. -.-.+..++|.+++. ++++|+ .|.+ +...+.|+.=..-+ .-..-+..|.|++|
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred ccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence 122211 112378999998865 666666 4433 33444444322222 22334566666444
No 388
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.46 E-value=1.4 Score=49.34 Aligned_cols=94 Identities=15% Similarity=0.099 Sum_probs=65.8
Q ss_pred EEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE--EEecC----------------
Q 005473 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL--DFHPS---------------- 651 (695)
Q Consensus 590 ~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl--~fspd---------------- 651 (695)
...+......+.+|+.+|++.+.++...=|.|.++|+.++.. ++.++|..+.=+.- .....
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v-vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV-VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh-hhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 344555566688999999999988887789999999998653 66666654431111 01111
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeEEEEEecCCC
Q 005473 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFE 684 (695)
Q Consensus 652 g~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~ 684 (695)
.-.|++-...-|.|.||++++|..+..+....+
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~k~ 411 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNVGKG 411 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEEeCCC
Confidence 123556677899999999999999999876543
No 389
>PRK10350 hypothetical protein; Provisional
Probab=92.33 E-value=0.84 Score=41.82 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=15.7
Q ss_pred ccccccchhhh-hHHHHHHHHHHHHHHHHhh
Q 005473 68 NEKHSESAASY-IESQVIKAREQQQQQQQQH 97 (695)
Q Consensus 68 ~~~~s~~a~~y-iq~q~~qqqqqqqqq~~~~ 97 (695)
+..++.....| +.+++..+.+.+.+|++|+
T Consensus 21 N~~NNPnqpGY~ipSQQRmQtqMQ~QQ~qQq 51 (145)
T PRK10350 21 NTLNNPNQPGYQIPSQQRMQTQMQTQQIQQK 51 (145)
T ss_pred hccCCCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 44455555677 6665555555544444333
No 390
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.29 E-value=4.9 Score=47.75 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=73.8
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------C-------------eEEEEecccCCCeEEEEEc--CCCCEEE
Q 005473 558 VESCHFSP--DGKLLATGGHDKKAVLWCTES-------F-------------TVKSTLEEHTQWITDVRFS--PSLSRLA 613 (695)
Q Consensus 558 V~~v~fsp--dg~~LaSgs~Dg~V~IWDl~t-------~-------------~~~~~l~~H~~~V~~v~~s--pdg~~La 613 (695)
|+-+.... +...|+.|.+||.|.+|.+++ . ++...+. ....++.++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 55554433 455889999999999997631 0 0112222 24578889998 6778888
Q ss_pred EEeCCCeEEEEECCC--CCeeEEEEecCCCCeEEEEEecCC--C---eEEEEEeCCCcEEEEEC
Q 005473 614 TSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSK--E---DLLCSCDNNSEIRYWSI 670 (695)
Q Consensus 614 Tgs~DgtIrvWDl~t--~~~~l~~~~gh~~~V~sl~fspdg--~---~llaSgs~Dg~IriWDl 670 (695)
+++....|.||-... .+.....-..|...|-+|+|-++. . ..+++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888777777775543 221111122355678999997754 2 37778899999999988
No 391
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.18 E-value=0.39 Score=36.75 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (695)
Q Consensus 597 ~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~ 627 (695)
...|.+++|+|...+||.|..||.|.||.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
No 392
>PRK10115 protease 2; Provisional
Probab=91.84 E-value=7.2 Score=46.79 Aligned_cols=111 Identities=13% Similarity=0.087 Sum_probs=67.3
Q ss_pred eEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-C-----CeEEEEEC
Q 005473 558 VESCHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-----RTVRVWDT 626 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~-----Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-D-----gtIrvWDl 626 (695)
+..+.|+|||++|+.+.. ...|+|.|+.++..+........ ..++|.+|+..|+.+.. + ..|+++++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 677889999998876543 24588889988764322221222 46999998876655433 2 36888899
Q ss_pred CCCC-eeEEEEecCCCCeE-EEEEecCCCeEEEEEe--CCCcEEEEEC
Q 005473 627 ENPD-YSLRTFTGHSTTVM-SLDFHPSKEDLLCSCD--NNSEIRYWSI 670 (695)
Q Consensus 627 ~t~~-~~l~~~~gh~~~V~-sl~fspdg~~llaSgs--~Dg~IriWDl 670 (695)
.++. .-...+.+...... .+..+.++..+++.+. .++.+.+|+.
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 8762 11233433333333 2333337776665444 3467999985
No 393
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.76 E-value=7.9 Score=43.44 Aligned_cols=81 Identities=7% Similarity=0.043 Sum_probs=49.3
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC-C
Q 005473 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF-F 683 (695)
Q Consensus 605 ~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h-~ 683 (695)
++.+....+....++.+.+.+..... .+. ..+.+..++++|+++ ++|.-..+|.+.|.+.+-.+++..+... .
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~----~i~-~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFK----QID-SDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred eecCcceEEEEecCCEEEEEEccccc----ccc-CCCCeEEEEECCCCC-EEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 33344444444555556644433211 111 235799999999998 5667777899999987766676666643 2
Q ss_pred CcEEEEEE
Q 005473 684 ESFVSVRV 691 (695)
Q Consensus 684 ~~VtsVaf 691 (695)
.....|.|
T Consensus 260 ~~p~~~~W 267 (410)
T PF04841_consen 260 SPPKQMAW 267 (410)
T ss_pred CCCcEEEE
Confidence 34455555
No 394
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=91.52 E-value=16 Score=37.82 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--------------ecccCCCeEEEE--EcCCCCEEEEEeCCCeE
Q 005473 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--------------LEEHTQWITDVR--FSPSLSRLATSSADRTV 621 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~--------------l~~H~~~V~~v~--~spdg~~LaTgs~DgtI 621 (695)
|..+...++-+.|++-+ |+.|+++++........ .......|..++ -...+...+.....++|
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 88999988877766655 59999999876443331 111223444444 12233444444455688
Q ss_pred EEEECCCC--C--eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE
Q 005473 622 RVWDTENP--D--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (695)
Q Consensus 622 rvWDl~t~--~--~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~ 679 (695)
.+|..... . ..++.+. ....+.+++|..+ .++.|. .....+.|+.++.....+
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~---~i~v~~-~~~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN---KICVGT-SKGFYLIDLNTGSPSELL 173 (275)
T ss_pred EEEEEECCcccccceeEEEE-cCCCcEEEEEeCC---EEEEEe-CCceEEEecCCCCceEEe
Confidence 88887653 1 2344544 3477899999943 454555 445888999877654444
No 395
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=91.46 E-value=0.056 Score=57.26 Aligned_cols=7 Identities=43% Similarity=0.354 Sum_probs=0.0
Q ss_pred CCccHHH
Q 005473 48 PGGFLFE 54 (695)
Q Consensus 48 ~~~fL~E 54 (695)
=+.||.|
T Consensus 275 YD~~L~e 281 (468)
T PF11498_consen 275 YDTFLNE 281 (468)
T ss_dssp -------
T ss_pred hHHHHhh
Confidence 3566666
No 396
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.33 E-value=5.1 Score=42.48 Aligned_cols=120 Identities=15% Similarity=0.200 Sum_probs=82.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccc-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005473 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (695)
Q Consensus 551 l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H-~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~ 629 (695)
+.+-+..|.++.|+|+.+.|++..+...-.||=...|..++++.-. -.....|.|.-++.++++-=.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3454555999999999999999998888888877788888877421 223446777777777777667888888877654
Q ss_pred Ce---------eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473 630 DY---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (695)
Q Consensus 630 ~~---------~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~ 671 (695)
.. ++............++|.|....++++ -+..=|+||.+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a-KEr~P~~I~~~~ 210 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA-KERNPIGIFEVT 210 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEE-EccCCcEEEEEe
Confidence 32 111222224556789999998877754 444556666654
No 397
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.09 E-value=2.6 Score=47.26 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=67.0
Q ss_pred CCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEE-EEEcCC-C---------
Q 005473 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPS-L--------- 609 (695)
Q Consensus 541 ~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~-v~~spd-g--------- 609 (695)
.+........+......+.+|..+|++++.|+...=|.|.|+|+.++..++.++|..+.=.. +..... .
T Consensus 293 ~~~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~ 372 (415)
T PF14655_consen 293 PAAPLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSP 372 (415)
T ss_pred CCcccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeeccccccccccccc
Confidence 33445566677778888999999999999988877799999999999999888876543221 111111 1
Q ss_pred -------C-EEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473 610 -------S-RLATSSADRTVRVWDTENPDYSLRTFT 637 (695)
Q Consensus 610 -------~-~LaTgs~DgtIrvWDl~t~~~~l~~~~ 637 (695)
. +++-+-.-|.|-||+++.+.. +..+.
T Consensus 373 ~~~~~~~l~LvIyaprRg~lEvW~~~~g~R-v~a~~ 407 (415)
T PF14655_consen 373 KSSSRFALFLVIYAPRRGILEVWSMRQGPR-VAAFN 407 (415)
T ss_pred CCCCcceEEEEEEeccCCeEEEEecCCCCE-EEEEE
Confidence 1 234456678899999988664 54444
No 398
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=90.42 E-value=2.3 Score=48.73 Aligned_cols=110 Identities=8% Similarity=0.029 Sum_probs=69.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEecccCC------CeE--EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 005473 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (695)
Q Consensus 567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~------~V~--~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g 638 (695)
+..++.++.|+.|.-.|..+++.+..+..... .+. .+.+. ++..++.++.|+.|+.+|.++++. +..+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~-~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQ-VWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCE-eeeecC
Confidence 34566777789999999999998877654322 010 01111 226888888999999999999875 444432
Q ss_pred CCCC-----e-EEEEEecCCCeEEEEEe---------CCCcEEEEECCCCeEEEEEec
Q 005473 639 HSTT-----V-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKN 681 (695)
Q Consensus 639 h~~~-----V-~sl~fspdg~~llaSgs---------~Dg~IriWDl~tg~~v~~~~~ 681 (695)
.... + .+..+.. ..++ .++ .+|.|+.+|..+|+.+-.+..
T Consensus 139 ~~~~~~~~~i~ssP~v~~--~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK--KLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCCcCcceEecCCCEEEC--CEEE-EeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 2110 1 1222332 2233 332 468899999999998877653
No 399
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.21 E-value=6.1 Score=44.13 Aligned_cols=117 Identities=16% Similarity=0.183 Sum_probs=79.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE----EEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005473 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (695)
Q Consensus 554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~----~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~ 629 (695)
..++|.++.||+|.+.||+--.|++|-+++....+.. .+.+..+..|...+|..+ +-+|..... .+-+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecC-CeEEEEEchh
Confidence 3558999999999999999999999999987432222 122333456889999866 555555433 4777777665
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCC
Q 005473 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINN 672 (695)
Q Consensus 630 ~~~l~~~~gh~~~V~sl~fspdg~~llaSgs-~Dg~IriWDl~t 672 (695)
+..++....|+-.|.=..|+++-..++.+.+ ...++.-+-+++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 5556777778888888888888765544444 344444444444
No 400
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.16 E-value=0.97 Score=33.94 Aligned_cols=31 Identities=35% Similarity=0.535 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q 005473 556 SKVESCHFSPDG---KLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 556 ~~V~~v~fspdg---~~LaSgs~Dg~V~IWDl~t 586 (695)
+.|.+|+|+|+. .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4888888889999999985
No 401
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=90.09 E-value=17 Score=40.79 Aligned_cols=32 Identities=9% Similarity=0.073 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 005473 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (695)
Q Consensus 556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~ 588 (695)
+.|.++.|+.+.+++ +-..||+|++||+....
T Consensus 81 ~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 81 GRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEF 112 (410)
T ss_pred CCEEEEEECCCCeEE-EEEcCCEEEEEeCCCce
Confidence 779999999866655 55679999999986433
No 402
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.81 E-value=1.5 Score=31.77 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=33.2
Q ss_pred cCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 650 pdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf 691 (695)
|+++.++++.-.++.|.++|..+++.+..+.....+ ..|+|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P-~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP-FGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC-ceEEe
Confidence 577888888888999999999999999988875444 55665
No 403
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.67 E-value=0.88 Score=34.16 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=27.3
Q ss_pred CCeEEEEEecCCC--eEEEEEeCCCcEEEEECCC
Q 005473 641 TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 641 ~~V~sl~fspdg~--~llaSgs~Dg~IriWDl~t 672 (695)
+.|.++.|+|... .||+-.-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998654 6888888889999999995
No 404
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.50 E-value=7.4 Score=46.81 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=48.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----------CCe--eEEEE--------ecCCCCeEEEEEecCC---C
Q 005473 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTEN----------PDY--SLRTF--------TGHSTTVMSLDFHPSK---E 653 (695)
Q Consensus 597 ~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t----------~~~--~l~~~--------~gh~~~V~sl~fspdg---~ 653 (695)
...|..|.++|+|.+|+..|..|. .|-.+.. ++. ..+++ ..+...|..+.|||.+ .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 356889999999999988887654 3333321 111 11221 1334578999999974 5
Q ss_pred eEEEEEeCCCcEEEEECCC
Q 005473 654 DLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 654 ~llaSgs~Dg~IriWDl~t 672 (695)
+++ .=..|++||+||+..
T Consensus 163 ~l~-vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 163 HLV-VLTSDNTLRLYDISD 180 (717)
T ss_pred eEE-EEecCCEEEEEecCC
Confidence 555 445599999999975
No 405
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.50 E-value=11 Score=45.55 Aligned_cols=109 Identities=15% Similarity=0.167 Sum_probs=69.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEecccCCC--------eEEEEEc----------------CCCCEEEEEeCCCeEE
Q 005473 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFS----------------PSLSRLATSSADRTVR 622 (695)
Q Consensus 567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~--------V~~v~~s----------------pdg~~LaTgs~DgtIr 622 (695)
+..|+.++.++.|.-.|.++++.+..+...... +..+.+. .++.+|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777777888998999999988877533211 1122221 1345888888999999
Q ss_pred EEECCCCCeeEEEEecCCCCe----------------EE-EEEecCCCeEEEEEe----------CCCcEEEEECCCCeE
Q 005473 623 VWDTENPDYSLRTFTGHSTTV----------------MS-LDFHPSKEDLLCSCD----------NNSEIRYWSINNGSC 675 (695)
Q Consensus 623 vWDl~t~~~~l~~~~gh~~~V----------------~s-l~fspdg~~llaSgs----------~Dg~IriWDl~tg~~ 675 (695)
-.|.++++.| ..|. ..+.| ++ -.+. + ..++ .|+ .+|.|+-+|+++|+.
T Consensus 274 ALDA~TGk~~-W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~-~-g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 274 ALDADTGKLC-EDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVA-G-TTVV-IGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEECCCCCEE-EEec-CCCceeeecccCcCCCcccccccCCEEE-C-CEEE-EEecccccccccCCCcEEEEEECCCCcE
Confidence 9999998874 3332 11111 11 1111 2 2234 443 268999999999999
Q ss_pred EEEEe
Q 005473 676 AGVFK 680 (695)
Q Consensus 676 v~~~~ 680 (695)
+-.+.
T Consensus 349 ~W~~~ 353 (764)
T TIGR03074 349 VWAWD 353 (764)
T ss_pred eeEEe
Confidence 87775
No 406
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.49 E-value=1.6 Score=53.23 Aligned_cols=104 Identities=15% Similarity=0.021 Sum_probs=70.5
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473 556 SKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (695)
Q Consensus 556 ~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~ 634 (695)
..+.|+.|+|.-. ..+.+..|+.|+|.-+.-......--.-...++||+|+|.|..++.|-..|++.-|...-.. ..
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei--k~ 233 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI--KS 233 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccce--ee
Confidence 3467899998543 35666778999988765333222222245678999999999999999999999988765321 12
Q ss_pred EEec----CCCCeEEEEEecCCCeEEEEEeC
Q 005473 635 TFTG----HSTTVMSLDFHPSKEDLLCSCDN 661 (695)
Q Consensus 635 ~~~g----h~~~V~sl~fspdg~~llaSgs~ 661 (695)
.+.+ ....|.||+|--.-.++++.+..
T Consensus 234 ~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~n~ 264 (1405)
T KOG3630|consen 234 EIPEPPVEENYRVLSVTWLSTQEFLVVYGNV 264 (1405)
T ss_pred cccCCCcCCCcceeEEEEecceeEEEEeccc
Confidence 2221 13679999998776666655543
No 407
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.48 E-value=6.3 Score=44.59 Aligned_cols=118 Identities=14% Similarity=0.207 Sum_probs=73.4
Q ss_pred EEEecCCCCCeEEEEEcCCC--------CEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcC----CCCEEEEE
Q 005473 548 FQLIPASTSKVESCHFSPDG--------KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLSRLATS 615 (695)
Q Consensus 548 v~~l~~H~~~V~~v~fspdg--------~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~sp----dg~~LaTg 615 (695)
+..+.-|.+ | -|.|.|+. ..|+--+ |..|.--|-+-.............++.-.|+. ...++|.+
T Consensus 503 veeW~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~a 579 (776)
T COG5167 503 VEEWDLKDD-V-VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAA 579 (776)
T ss_pred eeEeecCCc-c-eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeeeeehhccccccccccccccCceEEEe
Confidence 334444544 3 56777743 2344434 44444445443221112222334444444443 45799999
Q ss_pred eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (695)
Q Consensus 616 s~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~ 671 (695)
|..|-||+||--..+ ....+.+....|..++...+|+++||+| ...|.+-|++
T Consensus 580 s~kGDirLyDRig~r-AKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 580 SRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP 632 (776)
T ss_pred cCCCceeeehhhcch-hhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence 999999999975422 2455677778899999999999999888 4688888875
No 408
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.47 E-value=2.3 Score=43.49 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=51.9
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeEEE------Ee-------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473 606 SPSLSRLATSSADRTVRVWDTENPDYSLRT------FT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 606 spdg~~LaTgs~DgtIrvWDl~t~~~~l~~------~~-------gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t 672 (695)
...+.+|++...+|.+++||+.+.+..+.. +. .....|.++.+..+|..++ +-+ +|..+.||.+-
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV-~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIV-TLS-NGDSYSYSPDL 96 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEE-EEe-CCCEEEecccc
Confidence 345778988899999999999986642222 21 3456788999998887554 444 67889999887
Q ss_pred CeEEEEEe
Q 005473 673 GSCAGVFK 680 (695)
Q Consensus 673 g~~v~~~~ 680 (695)
+..+....
T Consensus 97 ~~W~~vsd 104 (219)
T PF07569_consen 97 GCWIRVSD 104 (219)
T ss_pred ceeEEecc
Confidence 76665443
No 409
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.36 E-value=8.6 Score=44.65 Aligned_cols=61 Identities=10% Similarity=0.090 Sum_probs=37.5
Q ss_pred CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF 682 (695)
Q Consensus 619 gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h 682 (695)
+.|.-||+.+++. +-.+........+. +.-.+. +++.++.||.++++|.++|+.+..++..
T Consensus 441 g~l~AiD~~tGk~-~W~~~~~~p~~~~~-l~t~g~-lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKI-VWEHKEDFPLWGGV-LATAGD-LVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCce-eeEecCCCCCCCcc-eEECCc-EEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 3567777777654 33222111111121 112333 6667888999999999999999888744
No 410
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.32 E-value=23 Score=43.03 Aligned_cols=104 Identities=8% Similarity=-0.009 Sum_probs=62.3
Q ss_pred CCcEEEEECCCCeEEEEeccc---------CCC--------e-EEEEEcCCCCEEEEEe------------------CCC
Q 005473 576 DKKAVLWCTESFTVKSTLEEH---------TQW--------I-TDVRFSPSLSRLATSS------------------ADR 619 (695)
Q Consensus 576 Dg~V~IWDl~t~~~~~~l~~H---------~~~--------V-~~v~~spdg~~LaTgs------------------~Dg 619 (695)
+|.|+-+|+++++.+..+..- .+. + ..+++.++..+++.+. ..+
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS 414 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence 688999999999998776420 011 1 2334555444443321 234
Q ss_pred eEEEEECCCCCeeEEEEec--CCC-------CeEEEEEec-CCC--eEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473 620 TVRVWDTENPDYSLRTFTG--HST-------TVMSLDFHP-SKE--DLLCSCDNNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 620 tIrvWDl~t~~~~l~~~~g--h~~-------~V~sl~fsp-dg~--~llaSgs~Dg~IriWDl~tg~~v~~~~ 680 (695)
.|.-.|+++++. +-.+.. |.- ...-+++.. +|+ .+++.++.+|.++++|.++|+.+..++
T Consensus 415 slvALD~~TGk~-~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 415 SLVALDATTGKE-RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred eEEEEeCCCCce-EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 566677777764 433332 211 111223332 442 377899999999999999999887654
No 411
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.16 E-value=2.1 Score=43.83 Aligned_cols=66 Identities=11% Similarity=0.070 Sum_probs=50.2
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------c-------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005473 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------E-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (695)
Q Consensus 563 fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l-------~-------~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t 628 (695)
+...+++|++-+.+|.+++||+.+.+++..- . .....|..+.+..+|.-|++-+ +|..+.||.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457888999999999999999988765332 1 2456788888888887777765 57889998775
Q ss_pred C
Q 005473 629 P 629 (695)
Q Consensus 629 ~ 629 (695)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
No 412
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.07 E-value=24 Score=42.96 Aligned_cols=120 Identities=18% Similarity=0.242 Sum_probs=72.5
Q ss_pred CCCCCeEEEEEc---C----CCCEEEEEeCCCcEEEEE------CCC---------CeEEEEeccc---CCCeEEEEEcC
Q 005473 553 ASTSKVESCHFS---P----DGKLLATGGHDKKAVLWC------TES---------FTVKSTLEEH---TQWITDVRFSP 607 (695)
Q Consensus 553 ~H~~~V~~v~fs---p----dg~~LaSgs~Dg~V~IWD------l~t---------~~~~~~l~~H---~~~V~~v~~sp 607 (695)
.-..+|..|+|. . ..++|++=. ...+.|+. +.. ..++..+..+ ..+..+|+|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 345678888887 2 223555544 45566665 111 1233444322 35678999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCC----CeeEEEEecCCCCe----------EEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473 608 -SLSRLATSSADRTVRVWDTENP----DYSLRTFTGHSTTV----------MSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 608 -dg~~LaTgs~DgtIrvWDl~t~----~~~l~~~~gh~~~V----------~sl~fspdg~~llaSgs~Dg~IriWDl~t 672 (695)
+...||+....|...|||+... ...+.....+.+.+ ..+.|.++...+| .|+ ...+.++|+++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCC
Confidence 4668999999999999999211 11122222222222 3678988766566 444 56789999987
Q ss_pred CeE
Q 005473 673 GSC 675 (695)
Q Consensus 673 g~~ 675 (695)
...
T Consensus 234 ~~~ 236 (765)
T PF10214_consen 234 NWQ 236 (765)
T ss_pred CCc
Confidence 654
No 413
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.02 E-value=3.8 Score=46.40 Aligned_cols=79 Identities=24% Similarity=0.264 Sum_probs=48.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEC---------CCCCeeE--EE-------Eec-CCCCeEEEEEecCC--CeEE
Q 005473 598 QWITDVRFSPSLSRLATSSADRTVRVWDT---------ENPDYSL--RT-------FTG-HSTTVMSLDFHPSK--EDLL 656 (695)
Q Consensus 598 ~~V~~v~~spdg~~LaTgs~DgtIrvWDl---------~t~~~~l--~~-------~~g-h~~~V~sl~fspdg--~~ll 656 (695)
..|..|..++.|..++-.+.+|.+.++=. +.++..+ ++ |.. ..-.+.-++|||+. +.-+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 45778888999999988888886554431 2222111 11 111 11235667899986 3334
Q ss_pred EEEeCCCcEEEEECCCCeEE
Q 005473 657 CSCDNNSEIRYWSINNGSCA 676 (695)
Q Consensus 657 aSgs~Dg~IriWDl~tg~~v 676 (695)
..-+.|.+||+||+.....+
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 45566999999998754433
No 414
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.91 E-value=12 Score=41.14 Aligned_cols=98 Identities=8% Similarity=0.034 Sum_probs=55.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----eE--E-EEecc----cCCCeEEEEEcCCCCEEEEEeCC-----
Q 005473 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----TV--K-STLEE----HTQWITDVRFSPSLSRLATSSAD----- 618 (695)
Q Consensus 556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~-----~~--~-~~l~~----H~~~V~~v~~spdg~~LaTgs~D----- 618 (695)
.....++|.++| |++++.+...++.|.... +. + ..+.. +...+..++|.|||.+.++-+..
T Consensus 72 ~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 72 SMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV 149 (367)
T ss_pred CCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence 346789998888 444455544445455321 21 1 12222 23457789999999876655421
Q ss_pred --------------CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEE
Q 005473 619 --------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (695)
Q Consensus 619 --------------gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaS 658 (695)
+.|.-+|.+.... ..+...-.....++|+++|. ++++
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~--e~~a~G~rnp~Gl~~d~~G~-l~~t 200 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKL--RVVAHGFQNPYGHSVDSWGD-VFFC 200 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeE--EEEecCcCCCccceECCCCC-EEEE
Confidence 4455666665332 22222223457899999987 4444
No 415
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=88.61 E-value=34 Score=35.68 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=68.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCeEE-EEe--cccCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCC-
Q 005473 557 KVESCHFSPDGKLLATGGHDKKAVLWC-TESFTVK-STL--EEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTEN- 628 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs~Dg~V~IWD-l~t~~~~-~~l--~~H~~~V~~v~~spdg~~LaTgs---~DgtIrvWDl~t- 628 (695)
.+..-.|++++.+.+....+..++++. ..++... ..+ ..-.+.|..++++|||.+++... .++.|.|=-+..
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 477889999988777777677777773 3333222 122 11122899999999999876654 356676665421
Q ss_pred --C--Ce---eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEE
Q 005473 629 --P--DY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (695)
Q Consensus 629 --~--~~---~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Iri 667 (695)
+ .. ++.........|+.++|.+++..+++....++.+..
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 1 11 122222334678999999998855555555554544
No 416
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.30 E-value=9.5 Score=38.79 Aligned_cols=102 Identities=17% Similarity=0.304 Sum_probs=63.9
Q ss_pred CEEEEEeCCCcEEEEECC--CCeEEEEecccCCCeEEEEEcCCCCEEEEEeC---CC---eEEEE---ECC-CCCeeEE-
Q 005473 568 KLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DR---TVRVW---DTE-NPDYSLR- 634 (695)
Q Consensus 568 ~~LaSgs~Dg~V~IWDl~--t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~---Dg---tIrvW---Dl~-t~~~~l~- 634 (695)
..|+.+...++|.+|++. ....+.++.. -+.|..+.++..|++|+|-=. .. .+|+| +.. ....+++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 445454557889999987 3445566654 488999999999999998622 22 56665 222 1111222
Q ss_pred EEecC---------------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473 635 TFTGH---------------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 635 ~~~gh---------------------~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t 672 (695)
.+.|| ...+.+++-+|-..++++++ ++++.+|.+..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~ 164 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKY 164 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEE
Confidence 23332 23467788888655576444 56899998764
No 417
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.26 E-value=6.6 Score=40.40 Aligned_cols=102 Identities=11% Similarity=0.015 Sum_probs=65.2
Q ss_pred EEEEEcCCCCEE-EEEeCCCcEEEEE--CCCCe-----EEEEecc---cC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473 559 ESCHFSPDGKLL-ATGGHDKKAVLWC--TESFT-----VKSTLEE---HT-QWITDVRFSPSLSRLATSSADRTVRVWDT 626 (695)
Q Consensus 559 ~~v~fspdg~~L-aSgs~Dg~V~IWD--l~t~~-----~~~~l~~---H~-~~V~~v~~spdg~~LaTgs~DgtIrvWDl 626 (695)
+.++|+.+.+.+ ++-+.+.+|.-|| +.++. .+..++- .. -.--.++...+|.+.++.-..++|...|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 468888877755 4456678887787 55543 2222221 00 11112344556777777777889999999
Q ss_pred CCCCeeEEEEecCCCCeEEEEEec-CCCeEEEEEeC
Q 005473 627 ENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDN 661 (695)
Q Consensus 627 ~t~~~~l~~~~gh~~~V~sl~fsp-dg~~llaSgs~ 661 (695)
.+++. +.++.-....|+|+||-- +-..+++++..
T Consensus 241 ~tGK~-L~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 241 TTGKI-LLEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred CCCcE-EEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 99886 677776788999999963 22335555543
No 418
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.20 E-value=45 Score=38.02 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=37.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEec-----ccCCCeEEEEEcCCC
Q 005473 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE-----EHTQWITDVRFSPSL 609 (695)
Q Consensus 555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~--~~~l~-----~H~~~V~~v~~spdg 609 (695)
-..-..|+|.|||++|++--..|.|++++-.++.. +..+. .-.+....|+++|+.
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34468999999998777765569999998655432 21111 124668899999874
No 419
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=88.04 E-value=12 Score=41.54 Aligned_cols=130 Identities=15% Similarity=0.074 Sum_probs=67.0
Q ss_pred EEEcCCCCE-EEEEeCCCc--EEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473 561 CHFSPDGKL-LATGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (695)
Q Consensus 561 v~fspdg~~-LaSgs~Dg~--V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~ 637 (695)
=+|..||+. |+++..||. +.+.|+.+++....-.+-........++|+++.++-...+..|+-.|+++.+. ...+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEE
Confidence 356778875 555555654 55668888776543333222233566778888887666677899999998765 45555
Q ss_pred cCCCCeEEEEEe--cCCCeEEEEEe----------------------CCCcEEEEECCCCeEEEEEecCCCcEEEEEEeC
Q 005473 638 GHSTTVMSLDFH--PSKEDLLCSCD----------------------NNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQ 693 (695)
Q Consensus 638 gh~~~V~sl~fs--pdg~~llaSgs----------------------~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~s 693 (695)
.....+-...|. .|+. .++..- -...|..-|+.+|+....+. -..++..+-| +
T Consensus 120 ~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~f-s 196 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQF-S 196 (386)
T ss_dssp --TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEE-E
T ss_pred CCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCccc-C
Confidence 566667656664 3344 332221 12356666778776554444 3456666777 6
Q ss_pred C
Q 005473 694 P 694 (695)
Q Consensus 694 P 694 (695)
|
T Consensus 197 P 197 (386)
T PF14583_consen 197 P 197 (386)
T ss_dssp T
T ss_pred C
Confidence 6
No 420
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.95 E-value=40 Score=36.28 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=54.8
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (695)
Q Consensus 559 ~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~-~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~ 637 (695)
..+....++..++ ++..|.|+. ..+.++. .....+-.+.+..+..+++|.++++++....+.-||--....... -.
T Consensus 107 ~~i~~l~~~~~~l-~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~-~r 183 (302)
T PF14870_consen 107 FGITALGDGSAEL-AGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPH-NR 183 (302)
T ss_dssp EEEEEEETTEEEE-EETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEE-E-
T ss_pred eEEEEcCCCcEEE-EcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEE-cc
Confidence 3444433443333 344444332 2233332 223344567899999999999999998777788898764333222 22
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 005473 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (695)
Q Consensus 638 gh~~~V~sl~fspdg~~llaSgs~Dg~IriWD 669 (695)
.-...|.++.|.|++. +++. ...|.|++=|
T Consensus 184 ~~~~riq~~gf~~~~~-lw~~-~~Gg~~~~s~ 213 (302)
T PF14870_consen 184 NSSRRIQSMGFSPDGN-LWML-ARGGQIQFSD 213 (302)
T ss_dssp -SSS-EEEEEE-TTS--EEEE-ETTTEEEEEE
T ss_pred CccceehhceecCCCC-EEEE-eCCcEEEEcc
Confidence 3457899999999977 4433 3788888877
No 421
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=87.82 E-value=0.16 Score=53.94 Aligned_cols=7 Identities=14% Similarity=0.444 Sum_probs=0.0
Q ss_pred ccCCCCC
Q 005473 128 STQHLND 134 (695)
Q Consensus 128 ~~~~~~~ 134 (695)
+.++.||
T Consensus 378 Qq~qmng 384 (468)
T PF11498_consen 378 QQHQMNG 384 (468)
T ss_dssp -------
T ss_pred hhhhccc
Confidence 3444564
No 422
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=87.72 E-value=43 Score=39.76 Aligned_cols=124 Identities=16% Similarity=0.171 Sum_probs=71.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--Eec-ccC------CCeEEEEEcCCCCEEEEEeC-C---CeE
Q 005473 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLE-EHT------QWITDVRFSPSLSRLATSSA-D---RTV 621 (695)
Q Consensus 555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~--~l~-~H~------~~V~~v~~spdg~~LaTgs~-D---gtI 621 (695)
.+.|..|.|..+++.+++.-.+|.|.+||........ .+. .+. ..|..........++++.+. + -++
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5679999999999999999999999999993322111 121 111 22222222122345555444 2 247
Q ss_pred EEEECCCCCeeEEEEe---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473 622 RVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 622 rvWDl~t~~~~l~~~~---gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~ 680 (695)
|++.+......+..+. -+........|+-....++.- .+++|.+|++..-+...++.
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~ 268 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTIS 268 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEE
Confidence 8888822222233332 222233344444433334433 68899999998877666655
No 423
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=87.36 E-value=56 Score=36.85 Aligned_cols=126 Identities=13% Similarity=0.159 Sum_probs=65.2
Q ss_pred CCCEEEEEe-CCCcEEEEECCC----CeEEEEecc---cC----CCeEEEEEcCCCCEEEEE--eCC----CeEEEEECC
Q 005473 566 DGKLLATGG-HDKKAVLWCTES----FTVKSTLEE---HT----QWITDVRFSPSLSRLATS--SAD----RTVRVWDTE 627 (695)
Q Consensus 566 dg~~LaSgs-~Dg~V~IWDl~t----~~~~~~l~~---H~----~~V~~v~~spdg~~LaTg--s~D----gtIrvWDl~ 627 (695)
+.++|+..+ ..+.|+|.|+.+ -+..++++. +. ..-..+..-|+|++++|+ ..+ |.+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 566777766 678999999873 345556653 11 334456666888888885 222 357888887
Q ss_pred CCCeeEEEEecC---CCCeEEEEEecCCCeEEEEEe--------------------CCCcEEEEECCCCeEEEEEecCCC
Q 005473 628 NPDYSLRTFTGH---STTVMSLDFHPSKEDLLCSCD--------------------NNSEIRYWSINNGSCAGVFKNFFE 684 (695)
Q Consensus 628 t~~~~l~~~~gh---~~~V~sl~fspdg~~llaSgs--------------------~Dg~IriWDl~tg~~v~~~~~h~~ 684 (695)
+... +...... ......+-|.|..+ +++|.. ...++++||+.+.+.+.++.-..+
T Consensus 166 tf~v-~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TFEV-KGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T--E-EEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cccc-cceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 6553 3444322 23346677788766 444542 246899999999999999985432
Q ss_pred --cEEEEEEeC
Q 005473 685 --SFVSVRVVQ 693 (695)
Q Consensus 685 --~VtsVaf~s 693 (695)
.+..|+|+|
T Consensus 244 g~~pLEvRflH 254 (461)
T PF05694_consen 244 GQMPLEVRFLH 254 (461)
T ss_dssp EEEEEEEEE-S
T ss_pred CCceEEEEecC
Confidence 356777744
No 424
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=86.97 E-value=4.7 Score=45.09 Aligned_cols=115 Identities=10% Similarity=0.136 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCEEEEEe--------------------CCCcEEEEECCCCeEEEEeccc--CCCeEEEEEcCC--CCEEE
Q 005473 558 VESCHFSPDGKLLATGG--------------------HDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPS--LSRLA 613 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs--------------------~Dg~V~IWDl~t~~~~~~l~~H--~~~V~~v~~spd--g~~La 613 (695)
-+.+-|.|..+.++|.. ...++.+||+.+.+.+.++.-- ...+..|+|..+ ..+-+
T Consensus 183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF 262 (461)
T PF05694_consen 183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF 262 (461)
T ss_dssp ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE
T ss_pred CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE
Confidence 35666777667777643 3467999999999999888432 235678888653 44433
Q ss_pred EEe-CCCeEEEEEC-CCCCee---EEEEec-----------------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473 614 TSS-ADRTVRVWDT-ENPDYS---LRTFTG-----------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (695)
Q Consensus 614 Tgs-~DgtIrvWDl-~t~~~~---l~~~~g-----------------h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~ 671 (695)
+|+ -..+|..|-- +.+... +..+.. -..-|+.+.++.|.++|++++-.+|.||-||+.
T Consensus 263 vg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 263 VGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred EEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 332 3444544433 333321 111111 024579999999999999999999999999997
Q ss_pred C
Q 005473 672 N 672 (695)
Q Consensus 672 t 672 (695)
.
T Consensus 343 D 343 (461)
T PF05694_consen 343 D 343 (461)
T ss_dssp S
T ss_pred C
Confidence 5
No 425
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.94 E-value=7.1 Score=45.33 Aligned_cols=109 Identities=5% Similarity=-0.057 Sum_probs=67.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEecccC-CCeE---E-------EEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (695)
Q Consensus 567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~-~~V~---~-------v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~ 635 (695)
+..|+.++.++.|+-.|..+++.+..+.... ..+. + +.+ .+..++.++.|+.|...|.++++. +..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~-~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKV-VWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCE-Eee
Confidence 4467777778889999999999887764321 1111 1 112 235677888899999999999886 333
Q ss_pred Ee--cCC--CCeEE-EEEecCCCeEEEEEe-----CCCcEEEEECCCCeEEEEEe
Q 005473 636 FT--GHS--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 636 ~~--gh~--~~V~s-l~fspdg~~llaSgs-----~Dg~IriWDl~tg~~v~~~~ 680 (695)
+. .+. ..+++ ..+. ++. +++..+ .+|.|+.+|.++|+.+-.+.
T Consensus 146 ~~~~~~~~~~~~tssP~v~-~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVV-KGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred cccccccccccccCCcEEE-CCE-EEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 22 111 11221 1122 333 443322 36899999999999887654
No 426
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.59 E-value=3 Score=40.86 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=26.7
Q ss_pred CCeEEEEEecC-----CCeEEEEEeCCCcEEEEECC
Q 005473 641 TTVMSLDFHPS-----KEDLLCSCDNNSEIRYWSIN 671 (695)
Q Consensus 641 ~~V~sl~fspd-----g~~llaSgs~Dg~IriWDl~ 671 (695)
..|.+++|+|- ++.+|++.+.++.|.||.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 47899999984 46799999999999999866
No 427
>PRK13684 Ycf48-like protein; Provisional
Probab=86.30 E-value=26 Score=38.13 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=63.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEE-EECCCCe-EEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 005473 555 TSKVESCHFSPDGKLLATGGHDKKAVL-WCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (695)
Q Consensus 555 ~~~V~~v~fspdg~~LaSgs~Dg~V~I-WDl~t~~-~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~ 632 (695)
...+.++.+.+++.+++++. .|.+.. +|- .++ -......-...++++.+.++++.++.+ ..|.+++=+.+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s- 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES- 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-
Confidence 45689999999987776655 454432 222 222 222222335678999999998877765 457665333333321
Q ss_pred EEEEec----CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe
Q 005473 633 LRTFTG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (695)
Q Consensus 633 l~~~~g----h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~ 674 (695)
-..... -...+.++.|.+++. ++++| .+|.|. ...+.|+
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G-~~G~v~-~S~d~G~ 290 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGG-GNGTLL-VSKDGGK 290 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC-EEEEc-CCCeEE-EeCCCCC
Confidence 111111 123478899998776 55444 466554 3444443
No 428
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=86.18 E-value=6.8 Score=46.10 Aligned_cols=72 Identities=18% Similarity=0.301 Sum_probs=50.8
Q ss_pred CCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEECC---------CCeEEEEe--cccC-CCeEEEEEcCCCCEEEEEeCC
Q 005473 553 ASTSKVESCHF--SPDGKLLATGGHDKKAVLWCTE---------SFTVKSTL--EEHT-QWITDVRFSPSLSRLATSSAD 618 (695)
Q Consensus 553 ~H~~~V~~v~f--spdg~~LaSgs~Dg~V~IWDl~---------t~~~~~~l--~~H~-~~V~~v~~spdg~~LaTgs~D 618 (695)
...+.|.++.| .|++..|++.|..+.|.||.-. +...++.+ ..|+ .+|.+..|.++|.+++.+ +
T Consensus 70 ~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--G 147 (631)
T PF12234_consen 70 SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--G 147 (631)
T ss_pred cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--C
Confidence 45677999999 4588899999999999998531 12233333 4454 689999999987666554 3
Q ss_pred CeEEEEEC
Q 005473 619 RTVRVWDT 626 (695)
Q Consensus 619 gtIrvWDl 626 (695)
..+.|+|-
T Consensus 148 Nqlfv~dk 155 (631)
T PF12234_consen 148 NQLFVFDK 155 (631)
T ss_pred CEEEEECC
Confidence 56777764
No 429
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=86.13 E-value=20 Score=41.47 Aligned_cols=69 Identities=19% Similarity=0.312 Sum_probs=48.2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEecccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q 005473 559 ESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN 628 (695)
Q Consensus 559 ~~v~fspdg~~LaSgs~Dg~V~IWDl~--t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs-~DgtIrvWDl~t 628 (695)
..|.|+|....|++-.....-.+++++ +......+. ..+.|+|.+|..||.+|+.+- ..=.-++||-..
T Consensus 116 QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 116 QGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 368999998887776655544556654 334444454 468899999999999887663 344578998754
No 430
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=85.80 E-value=20 Score=38.41 Aligned_cols=114 Identities=14% Similarity=0.139 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECC------CC-eEEEEecc-----cCCCeEEEEEcCCCC------------EEE
Q 005473 558 VESCHFSPDGKLLATGGHDKKAVLWCTE------SF-TVKSTLEE-----HTQWITDVRFSPSLS------------RLA 613 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~------t~-~~~~~l~~-----H~~~V~~v~~spdg~------------~La 613 (695)
-..|+|+|.+-+.++...-++..+||.. .. .++.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 3679999999888888888999999986 11 22334332 134567777764322 367
Q ss_pred EEeCCCeEEEEECCCCCe----eEEEEe-cCCCCe-EEEEEecC--CCeEEEEEeCCCcEEEEECC
Q 005473 614 TSSADRTVRVWDTENPDY----SLRTFT-GHSTTV-MSLDFHPS--KEDLLCSCDNNSEIRYWSIN 671 (695)
Q Consensus 614 Tgs~DgtIrvWDl~t~~~----~l~~~~-gh~~~V-~sl~fspd--g~~llaSgs~Dg~IriWDl~ 671 (695)
.+++||+|.-|...-... .+..+. +..+.| ..+++... +..|+++--..++|.|||-.
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 778999999998533221 122222 223445 34566543 56666666678999999854
No 431
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.61 E-value=11 Score=40.06 Aligned_cols=114 Identities=14% Similarity=0.158 Sum_probs=69.3
Q ss_pred CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEe------CCCeEEEEECCCCCeeEEEEec-----CCCCeE
Q 005473 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFTG-----HSTTVM 644 (695)
Q Consensus 576 Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs------~DgtIrvWDl~t~~~~l~~~~g-----h~~~V~ 644 (695)
...||+||..+.+-..--.+-.+.|+++.|..+..+++.|. ....+..||..+... ..+.+ -.+.|.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w--~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW--SSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee--eecCCcccccCCCcEE
Confidence 45699999987665544445568899999986666777764 345689999987543 33333 246788
Q ss_pred EEEEec-CCCeEEEEEe-CC--CcEEEEECCCCeEEEE-EecCCCcEEEEEE
Q 005473 645 SLDFHP-SKEDLLCSCD-NN--SEIRYWSINNGSCAGV-FKNFFESFVSVRV 691 (695)
Q Consensus 645 sl~fsp-dg~~llaSgs-~D--g~IriWDl~tg~~v~~-~~~h~~~VtsVaf 691 (695)
.+.+.. |+..++++|. .+ ..|..||-.+-..+.. .......|..+.+
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 887743 4444665554 33 3566776543333333 2222345555544
No 432
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.74 E-value=60 Score=34.71 Aligned_cols=122 Identities=13% Similarity=0.247 Sum_probs=80.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-------Ee--ccc-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-------TL--EEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~-------~l--~~H-~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~ 627 (695)
...|.|..+|.++++--.+..+.++.+.....+. .+ ..+ ......++|.|....|+.+-.-.=+.||.+.
T Consensus 131 pE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 131 PETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred hhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 3567888788888887788888888775442221 11 112 4567789999988888887666656666654
Q ss_pred CCC--eeEEEEecCC-------CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473 628 NPD--YSLRTFTGHS-------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 628 t~~--~~l~~~~gh~-------~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~ 680 (695)
... ..+.....+. ..|.++.|++....+++-+.+++.|.-.|.. |+.+..+.
T Consensus 211 ~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 211 QSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred cCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 322 1111111221 3478889998878899999999999888865 44454444
No 433
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.62 E-value=4.4 Score=47.04 Aligned_cols=75 Identities=19% Similarity=0.307 Sum_probs=44.5
Q ss_pred CCCCEEEEEeCCCeEEEEECCC----CCeeE-EEEec--------------------CCCCeEEEEEec---CCCeEEEE
Q 005473 607 PSLSRLATSSADRTVRVWDTEN----PDYSL-RTFTG--------------------HSTTVMSLDFHP---SKEDLLCS 658 (695)
Q Consensus 607 pdg~~LaTgs~DgtIrvWDl~t----~~~~l-~~~~g--------------------h~~~V~sl~fsp---dg~~llaS 658 (695)
++...|+.+..||.+...+... +.... ..+.. ..+.+.+++++. ++..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3566778888888888777654 11111 11110 113355666665 24457779
Q ss_pred EeCCCcEEEEECCCCeEEEEEec
Q 005473 659 CDNNSEIRYWSINNGSCAGVFKN 681 (695)
Q Consensus 659 gs~Dg~IriWDl~tg~~v~~~~~ 681 (695)
-+.|+.||+||+.+++|+.++..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEET
T ss_pred EeCCCeEEEEECCCCeEEEEecc
Confidence 99999999999999999877643
No 434
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.20 E-value=19 Score=38.24 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=66.0
Q ss_pred EEEEcCCCC-EEEEEeCCCc-EEEEECCCCeEEEEecccC--CCeEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCC
Q 005473 560 SCHFSPDGK-LLATGGHDKK-AVLWCTESFTVKSTLEEHT--QWITDVRFSPSLSRLATSS-----ADRTVRVWDTENPD 630 (695)
Q Consensus 560 ~v~fspdg~-~LaSgs~Dg~-V~IWDl~t~~~~~~l~~H~--~~V~~v~~spdg~~LaTgs-----~DgtIrvWDl~t~~ 630 (695)
.++|+|.-. -++.+-.-|+ ..|+|..+.....++...+ ...-.=.|+|||.+|...= .-|.|-|||.+.+-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 466777433 4555555444 4578887766554443221 1122346899999986542 23679999999766
Q ss_pred eeEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 005473 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (695)
Q Consensus 631 ~~l~~~~gh~~~V~sl~fspdg~~llaSgs 660 (695)
..+..+..|.-.--.|.|.+||+.+++..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 567778888777788999999996665543
No 435
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=84.19 E-value=19 Score=39.29 Aligned_cols=113 Identities=15% Similarity=0.181 Sum_probs=68.2
Q ss_pred EEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccc---CC----CeEEEEEcCCCCEEEEEeC--CC
Q 005473 559 ESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH---TQ----WITDVRFSPSLSRLATSSA--DR 619 (695)
Q Consensus 559 ~~v~fspdg~~LaSgs----------~Dg~V~IWDl~t~~~~~~l~~H---~~----~V~~v~~spdg~~LaTgs~--Dg 619 (695)
-.+..+||++.+++++ ..-.|.+||..+..+...+.-. .. ....+.++.|+++++.... --
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 4467899999888754 2346899999999887755322 11 2234677888888777643 45
Q ss_pred eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-CCeEE
Q 005473 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCA 676 (695)
Q Consensus 620 tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~-tg~~v 676 (695)
.|.|-|+...+. +.++.- . .|.. ..|.++.=|.+-+.||.+-...+. .|+..
T Consensus 119 SVtVVDl~~~kv-v~ei~~-P-GC~~--iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 119 SVTVVDLAAKKV-VGEIDT-P-GCWL--IYPSGNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp EEEEEETTTTEE-EEEEEG-T-SEEE--EEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred eEEEEECCCCce-eeeecC-C-CEEE--EEecCCCceEEEecCCceEEEEECCCCCEe
Confidence 688888887664 555442 1 1222 234332234455568888888877 45544
No 436
>PHA03098 kelch-like protein; Provisional
Probab=83.51 E-value=21 Score=41.12 Aligned_cols=105 Identities=7% Similarity=0.035 Sum_probs=53.8
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeEEEEe--cccCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEECCCC
Q 005473 566 DGKLLATGGHD------KKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD--------RTVRVWDTENP 629 (695)
Q Consensus 566 dg~~LaSgs~D------g~V~IWDl~t~~~~~~l--~~H~~~V~~v~~spdg~~LaTgs~D--------gtIrvWDl~t~ 629 (695)
++++++.||.+ ..|.+||..+.+-...- ....... ++.. .++.+++.|+.+ ..+.+||..+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-ECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 56666667632 35788898765432211 1111111 2222 245666777643 23889998876
Q ss_pred CeeE-EEEecCCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECCCCeE
Q 005473 630 DYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSC 675 (695)
Q Consensus 630 ~~~l-~~~~gh~~~V~sl~fspdg~~llaSgs~D-----g~IriWDl~tg~~ 675 (695)
+... ..+.........+.+ ++ .+++.|+.+ ..|.+||..+.+.
T Consensus 467 ~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 467 KWTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred ceeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 5421 111111111122222 44 466677654 4789999987754
No 437
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=83.41 E-value=21 Score=38.78 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEe----cccCCCeEEEEEcCC---CCEEE-EEeCC--------
Q 005473 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLA-TSSAD-------- 618 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~---~~~l----~~H~~~V~~v~~spd---g~~La-Tgs~D-------- 618 (695)
-+.|+|.|||++|++ ...|.|++++ ..+.. +..+ .........++++|+ ..+|. +.+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 578999999987665 5599999999 33433 2222 123456789999994 23443 33311
Q ss_pred CeEEEEECCCC-------CeeEEEEec---CCCCeEEEEEecCCCeEEEEEe
Q 005473 619 RTVRVWDTENP-------DYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCD 660 (695)
Q Consensus 619 gtIrvWDl~t~-------~~~l~~~~g---h~~~V~sl~fspdg~~llaSgs 660 (695)
..|.-|.+... +..+..+.. .......|.|.|||. |+++.+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G 132 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVG 132 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeC
Confidence 13444444332 111222222 223457799999996 554544
No 438
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=83.29 E-value=59 Score=36.13 Aligned_cols=154 Identities=14% Similarity=0.212 Sum_probs=80.7
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCT 584 (695)
Q Consensus 506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~-~V~~v~fspdg~~LaSgs~Dg~V~IWDl 584 (695)
+++|..+..|+.-.+|...-. + ..+..|..+.+ ......++++.+.|+-...+..|+-.|+
T Consensus 48 ~kllF~s~~dg~~nly~lDL~--------------t----~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL 109 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLA--------------T----GEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDL 109 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETT--------------T-----EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEET
T ss_pred CEEEEEeccCCCcceEEEEcc--------------c----CEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEEC
Confidence 367777777777777744211 1 12333333221 1224566788888776666778998999
Q ss_pred CCCeEEEEecccCCCeEEEEEc--CCCCEEEEEe---C-------------------CCeEEEEECCCCCeeEEEEecCC
Q 005473 585 ESFTVKSTLEEHTQWITDVRFS--PSLSRLATSS---A-------------------DRTVRVWDTENPDYSLRTFTGHS 640 (695)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~v~~s--pdg~~LaTgs---~-------------------DgtIrvWDl~t~~~~l~~~~gh~ 640 (695)
++.+....++.....+-...|. .++..++-.- . .+.|..-|++++.. +++..-.
T Consensus 110 ~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~--~~v~~~~ 187 (386)
T PF14583_consen 110 DTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER--KVVFEDT 187 (386)
T ss_dssp TT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E--EEEEEES
T ss_pred CcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce--eEEEecC
Confidence 9988776776666666556664 3455543221 0 22455557776553 4444456
Q ss_pred CCeEEEEEecCCCeEEEEEeC---CCc-EEEEECCC-CeEEEEE
Q 005473 641 TTVMSLDFHPSKEDLLCSCDN---NSE-IRYWSINN-GSCAGVF 679 (695)
Q Consensus 641 ~~V~sl~fspdg~~llaSgs~---Dg~-IriWDl~t-g~~v~~~ 679 (695)
.++..+-|+|..+.+|+.|-+ |.. -|||-+++ |.-+..+
T Consensus 188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v 231 (386)
T PF14583_consen 188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV 231 (386)
T ss_dssp S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES
T ss_pred ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee
Confidence 788999999998888887753 322 37776653 3333333
No 439
>PHA03098 kelch-like protein; Provisional
Probab=83.14 E-value=19 Score=41.65 Aligned_cols=105 Identities=9% Similarity=0.033 Sum_probs=52.5
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEE--ecccCCCeEEEEEcCCCCEEEEEeCC------CeEEEEECCCCCee
Q 005473 566 DGKLLATGGHD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS 632 (695)
Q Consensus 566 dg~~LaSgs~D-----g~V~IWDl~t~~~~~~--l~~H~~~V~~v~~spdg~~LaTgs~D------gtIrvWDl~t~~~~ 632 (695)
++++++.||.+ ..|.+||..+.+-... +...... .+++. -++.+++.||.+ ..+.+||+.+....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 57777777765 3477788776543221 1111111 11222 245667777632 45889998875432
Q ss_pred E-EEEecCCCCeEEEEEecCCCeEEEEEeCC--------CcEEEEECCCCeE
Q 005473 633 L-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSC 675 (695)
Q Consensus 633 l-~~~~gh~~~V~sl~fspdg~~llaSgs~D--------g~IriWDl~tg~~ 675 (695)
. ..+...... .+++.. ++ .+++.|+.+ ..+.+||..+++.
T Consensus 420 ~~~~~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 420 KGSPLPISHYG-GCAIYH-DG-KIYVIGGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred ecCCCCccccC-ceEEEE-CC-EEEEECCccCCCCCcccceEEEecCCCCce
Confidence 1 111111111 122222 33 466666643 2388899877654
No 440
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=82.67 E-value=0.18 Score=56.13 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeEEEE
Q 005473 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTF 636 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~L-aTgs~DgtIrvWDl~t~~~~l~~~ 636 (695)
-....|-+++.-++.++.+..|..||-. ++....+. .++...+++|.-++..+ +.+-..+.+.+||+.+....--.+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 3456677877778889989999999954 34333333 34566788898877665 445567899999998643211112
Q ss_pred ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
.+. ..-.-+.|++..+ .++.|...|.|+|++..+.+.+.+...|...+++++| .+
T Consensus 115 gg~-~s~sll~wsKg~~-el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av-~l 169 (615)
T KOG2247|consen 115 GGT-SSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAV-TL 169 (615)
T ss_pred cCc-chHHHHhhccCCc-cccccccccceEEEeccchhhhhhhcccccceeEEEe-cc
Confidence 211 1112267888776 4447778999999999887777777668889999988 65
No 441
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=82.66 E-value=53 Score=36.78 Aligned_cols=129 Identities=11% Similarity=0.113 Sum_probs=69.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-e---eE
Q 005473 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-Y---SL 633 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~-~---~l 633 (695)
...+..++|+.+++.+.....++-||--...-...-......+..+.|.+++.+++++ .+|.+.+ ....+. . ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccce
Confidence 5566778888887776644433445532111111222335668899999998888776 4555443 333332 1 11
Q ss_pred EEEec--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE---ecCCCcEEEEEE
Q 005473 634 RTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KNFFESFVSVRV 691 (695)
Q Consensus 634 ~~~~g--h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~---~~h~~~VtsVaf 691 (695)
..... -...+.++.|.+++. ++++ +.+|.|.... ..|+.=... ..-...+..|.|
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~-~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f 378 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKE-AWAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKF 378 (398)
T ss_pred eecccCCCCcceEEEEEcCCCc-EEEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEE
Confidence 21111 113488999998866 5544 4577776654 334332221 222345667776
No 442
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=82.62 E-value=1.3e+02 Score=36.83 Aligned_cols=125 Identities=10% Similarity=0.101 Sum_probs=74.3
Q ss_pred eeEEEecC---CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC----e-EEEEecccCC----------CeEEEEEc
Q 005473 546 TEFQLIPA---STSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF----T-VKSTLEEHTQ----------WITDVRFS 606 (695)
Q Consensus 546 ~~v~~l~~---H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~----~-~~~~l~~H~~----------~V~~v~~s 606 (695)
.++..+.. ...+...|+|+| +.+.||.....|...|||+... . .+.....+.+ .-..|.|.
T Consensus 133 ~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~ 212 (765)
T PF10214_consen 133 NPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWV 212 (765)
T ss_pred ceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEec
Confidence 44444442 234578899998 4558999999999999999211 1 1111111222 23478898
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeE-EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473 607 PSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 607 pdg~~LaTgs~DgtIrvWDl~t~~~~l-~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t 672 (695)
++...|+.++ -..+.++|+++..... -.......+|..+.-+|+....++.-. ...|...|+..
T Consensus 213 ~~~~~lLv~~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 213 SDSNRLLVCN-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CCCCEEEEEc-CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 8877777765 4568999998765411 112223456777777776332222222 24666667665
No 443
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=81.90 E-value=23 Score=41.58 Aligned_cols=111 Identities=11% Similarity=0.082 Sum_probs=59.3
Q ss_pred EEEEEcCCCCEEEEEeCC------CcEEEEECCCCeEEE--EecccCCCeEEEEEcCCCCEEEEEeCCCe-----EEEEE
Q 005473 559 ESCHFSPDGKLLATGGHD------KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADRT-----VRVWD 625 (695)
Q Consensus 559 ~~v~fspdg~~LaSgs~D------g~V~IWDl~t~~~~~--~l~~H~~~V~~v~~spdg~~LaTgs~Dgt-----IrvWD 625 (695)
.++++. ++.+.++||.| .+|..||.++.+-.. .+...........+ +|.+.|+|+.||. |-.||
T Consensus 326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YD 402 (571)
T KOG4441|consen 326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYD 402 (571)
T ss_pred ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEec
Confidence 334443 55778888888 357778877655322 11111111111111 4677899998874 78888
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC------CcEEEEECCCCe
Q 005473 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGS 674 (695)
Q Consensus 626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D------g~IriWDl~tg~ 674 (695)
..+.+..... .+...........-+..+++.||.| .+|..||..+++
T Consensus 403 p~~~~W~~va--~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 403 PVTNKWTPVA--PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred CCCCcccccC--CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 8875542111 1111222222222224477777744 356788877654
No 444
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=81.88 E-value=47 Score=31.38 Aligned_cols=112 Identities=15% Similarity=0.075 Sum_probs=67.8
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC--------eEEEEecccCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEC
Q 005473 560 SCHFSPDGKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDT 626 (695)
Q Consensus 560 ~v~fspdg~~LaSgs~Dg~V~IWDl~t~--------~~~~~l~~H~~~V~~v~~sp-----dg~~LaTgs~DgtIrvWDl 626 (695)
.-.|......|++++.-++|.|++.... ..+..+. -...|++++-.+ +...|+.|+ ...|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 3455555557888888999999986532 2333343 245677775433 244667765 567999999
Q ss_pred CCCCeeEEEEecCCCCeEEEEEec---CCCeEEEEEeCCCcEEEEECCCCeEE
Q 005473 627 ENPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGSCA 676 (695)
Q Consensus 627 ~t~~~~l~~~~gh~~~V~sl~fsp---dg~~llaSgs~Dg~IriWDl~tg~~v 676 (695)
..... ..++.-.+.|.++.+-. ....+++.|+ +..|.-||..-.+..
T Consensus 81 ~~N~d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 81 ENNSD--LFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIF 130 (136)
T ss_pred ccCch--hhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEE
Confidence 87543 22333346677777632 1223555555 678888886644433
No 445
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.46 E-value=12 Score=42.65 Aligned_cols=74 Identities=19% Similarity=0.244 Sum_probs=50.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEE---------CCCCeEEEEec-----------ccCCCeEEEEEcCCC---CEEE
Q 005473 557 KVESCHFSPDGKLLATGGHDKKAVLWC---------TESFTVKSTLE-----------EHTQWITDVRFSPSL---SRLA 613 (695)
Q Consensus 557 ~V~~v~fspdg~~LaSgs~Dg~V~IWD---------l~t~~~~~~l~-----------~H~~~V~~v~~spdg---~~La 613 (695)
.|.-|..++.|..++-+|-||.+.++= ++.++.+.+.+ ...-.+..++|+|+. ..|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 477888999999999999999665542 12333221111 011235678999964 6777
Q ss_pred EEeCCCeEEEEECCCCC
Q 005473 614 TSSADRTVRVWDTENPD 630 (695)
Q Consensus 614 Tgs~DgtIrvWDl~t~~ 630 (695)
.-+.|.+|||||+....
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 77889999999997654
No 446
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=80.78 E-value=69 Score=39.36 Aligned_cols=170 Identities=15% Similarity=0.032 Sum_probs=89.5
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE--
Q 005473 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW-- 582 (695)
Q Consensus 505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IW-- 582 (695)
.+++++.|.|+..+.+.....+... . + ........-...|.-..|--|..+|.++..||.+.-|
T Consensus 547 ~s~~~aVG~Ws~~~~~l~~~pd~~~----~-~---------~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~ 612 (1096)
T KOG1897|consen 547 KSRLLAVGLWSDISMILTFLPDLIL----I-T---------HEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVL 612 (1096)
T ss_pred cceEEEEEeecceEEEEEECCCcce----e-e---------eeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEE
Confidence 3469999999988887754333110 0 0 0000001112336666676678899999999998865
Q ss_pred ECCCCeEEEEec--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEE-Ee-cCCCeEEEE
Q 005473 583 CTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD-FH-PSKEDLLCS 658 (695)
Q Consensus 583 Dl~t~~~~~~l~--~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~-fs-pdg~~llaS 658 (695)
|..++..-..-+ --+.++.--.|+..++.-+.++.|+-.-+|.-+. +.++..+.. ..|..+| |+ +..+.-+++
T Consensus 613 d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kLv~spls~--kev~~~c~f~s~a~~d~l~~ 689 (1096)
T KOG1897|consen 613 DINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KLVYSPLSL--KEVNHMCPFNSDAYPDSLAS 689 (1096)
T ss_pred EcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cEEEeccch--HHhhhhcccccccCCceEEE
Confidence 555554332221 1245666667776555555555677666776553 433332221 1122221 22 223334545
Q ss_pred EeCCCcEEEEECCCCe--EEEEEecCCCcEEEEEEeCC
Q 005473 659 CDNNSEIRYWSINNGS--CAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 659 gs~Dg~IriWDl~tg~--~v~~~~~h~~~VtsVaf~sP 694 (695)
+. .+.+++.-++.-. -++++.-| .....|+| ++
T Consensus 690 ~~-~~~l~i~tid~iqkl~irtvpl~-~~prrI~~-q~ 724 (1096)
T KOG1897|consen 690 AN-GGALTIGTIDEIQKLHIRTVPLG-ESPRRICY-QE 724 (1096)
T ss_pred ec-CCceEEEEecchhhcceeeecCC-CChhheEe-cc
Confidence 55 5678888776532 23444333 33356666 54
No 447
>PHA02713 hypothetical protein; Provisional
Probab=80.59 E-value=28 Score=40.68 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=52.7
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeEEE--EecccCCCeEEEEEcCCCCEEEEEeCCC-------------------
Q 005473 566 DGKLLATGGHDK-----KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR------------------- 619 (695)
Q Consensus 566 dg~~LaSgs~Dg-----~V~IWDl~t~~~~~--~l~~H~~~V~~v~~spdg~~LaTgs~Dg------------------- 619 (695)
+|++.+.||.++ .|..||..+.+-.. .+.........+.+ ++.+.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 677777888764 47789987654321 11111111112222 567777777652
Q ss_pred ----eEEEEECCCCCee-EEEEecCCCCeEEEEEecCCCeEEEEEeCC------CcEEEEECCC
Q 005473 620 ----TVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINN 672 (695)
Q Consensus 620 ----tIrvWDl~t~~~~-l~~~~gh~~~V~sl~fspdg~~llaSgs~D------g~IriWDl~t 672 (695)
+|..||..+.... +..+...... .+++.. ++ .|++.|+.+ ..|..||..+
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCccccc-CcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCC
Confidence 4778888775431 1111111111 122222 33 366677654 2467899887
No 448
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=80.14 E-value=6.5 Score=28.10 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=24.4
Q ss_pred ecCCCCeEEEEEecCCCeEEEEEeCC--CcEEEE
Q 005473 637 TGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYW 668 (695)
Q Consensus 637 ~gh~~~V~sl~fspdg~~llaSgs~D--g~IriW 668 (695)
......-....|+|||+.|++++..+ |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33455678899999999999998888 777776
No 449
>PRK13684 Ycf48-like protein; Provisional
Probab=79.42 E-value=76 Score=34.49 Aligned_cols=110 Identities=10% Similarity=0.061 Sum_probs=63.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc----cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 005473 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (695)
Q Consensus 555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~----H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~ 630 (695)
...++++.+.++++.+++| ..|.+++=..+.+..-..+.. -...++++.|.+++..+++| .+|.|. ...+.++
T Consensus 214 ~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~ 290 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGK 290 (334)
T ss_pred cccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCC
Confidence 4568999999999877765 467665433444443222221 12457889999877665554 566554 3344333
Q ss_pred eeEEEE---ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473 631 YSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (695)
Q Consensus 631 ~~l~~~---~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl 670 (695)
. -... .+-......+.|..++. .+++ +..|.|-.|+-
T Consensus 291 t-W~~~~~~~~~~~~~~~~~~~~~~~-~~~~-G~~G~il~~~~ 330 (334)
T PRK13684 291 T-WEKDPVGEEVPSNFYKIVFLDPEK-GFVL-GQRGVLLRYVG 330 (334)
T ss_pred C-CeECCcCCCCCcceEEEEEeCCCc-eEEE-CCCceEEEecC
Confidence 2 1121 12223577788876655 5544 45788877763
No 450
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=79.02 E-value=25 Score=38.59 Aligned_cols=110 Identities=10% Similarity=0.062 Sum_probs=64.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccc--CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CC
Q 005473 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TT 642 (695)
Q Consensus 566 dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H--~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~-~~ 642 (695)
+++ ++.+..||.|.-.|.+++..+.....- ...+.+-.+..+| .|+.++.++.++++|.+++.. +..+.... -.
T Consensus 68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G-~i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~~~ 144 (370)
T COG1520 68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG-KIYVGSWDGKLYALDASTGTL-VWSRNVGGSPY 144 (370)
T ss_pred CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC-eEEEecccceEEEEECCCCcE-EEEEecCCCeE
Confidence 444 555577888888888888766433211 1122222222244 578888899999999987765 45544443 11
Q ss_pred eEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 643 V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~ 680 (695)
+....+-.++. +..++.++.+...|..+|+.+-.+.
T Consensus 145 ~~~~~v~~~~~--v~~~s~~g~~~al~~~tG~~~W~~~ 180 (370)
T COG1520 145 YASPPVVGDGT--VYVGTDDGHLYALNADTGTLKWTYE 180 (370)
T ss_pred EecCcEEcCcE--EEEecCCCeEEEEEccCCcEEEEEe
Confidence 22223333433 3344467888888888887765543
No 451
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=78.95 E-value=13 Score=43.07 Aligned_cols=71 Identities=24% Similarity=0.211 Sum_probs=42.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCC----CeEEE-Ee-ccc--------------------CCCeEEEEEcC----CCCEEEE
Q 005473 565 PDGKLLATGGHDKKAVLWCTES----FTVKS-TL-EEH--------------------TQWITDVRFSP----SLSRLAT 614 (695)
Q Consensus 565 pdg~~LaSgs~Dg~V~IWDl~t----~~~~~-~l-~~H--------------------~~~V~~v~~sp----dg~~LaT 614 (695)
.+...|+.+..||.+....... +.... .+ ..+ .+.+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3566777778888888776543 21111 11 111 23455666666 6789999
Q ss_pred EeCCCeEEEEECCCCCeeEEEE
Q 005473 615 SSADRTVRVWDTENPDYSLRTF 636 (695)
Q Consensus 615 gs~DgtIrvWDl~t~~~~l~~~ 636 (695)
.+.|+++|+||+.++.. +.+.
T Consensus 236 l~~D~~LRiW~l~t~~~-~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC-LATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCE-EEEE
T ss_pred EeCCCeEEEEECCCCeE-EEEe
Confidence 99999999999998764 4443
No 452
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=77.99 E-value=1.2e+02 Score=33.63 Aligned_cols=122 Identities=15% Similarity=0.119 Sum_probs=68.3
Q ss_pred eEEEEEcCCCCEEEEEeCC----CcEEEEECCCC----eEEEEecccCCCe-EEEEEcCCCCEEEEEe---CCCeEEEEE
Q 005473 558 VESCHFSPDGKLLATGGHD----KKAVLWCTESF----TVKSTLEEHTQWI-TDVRFSPSLSRLATSS---ADRTVRVWD 625 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~D----g~V~IWDl~t~----~~~~~l~~H~~~V-~~v~~spdg~~LaTgs---~DgtIrvWD 625 (695)
...+.+++|+++|+..+.. ..|++.|+... .....+..+...+ ..+... .+.+++... ..+.|...+
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~ 307 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVD 307 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEE
T ss_pred EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEec
Confidence 5788899999987754432 34777788764 2233333333333 444444 444444443 245677778
Q ss_pred CCCCCe--eEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEe
Q 005473 626 TENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK 680 (695)
Q Consensus 626 l~t~~~--~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~ 680 (695)
+..... ....+..|...+.-..+...+.+|++..-.++ .|++||+..+.....+.
T Consensus 308 l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~ 366 (414)
T PF02897_consen 308 LADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIP 366 (414)
T ss_dssp TTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEE
T ss_pred ccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeec
Confidence 887652 23356666665544455555667777776665 58889988455555554
No 453
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=77.70 E-value=76 Score=39.03 Aligned_cols=111 Identities=11% Similarity=0.052 Sum_probs=75.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--CCeeE
Q 005473 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--PDYSL 633 (695)
Q Consensus 556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t--~~~~l 633 (695)
+.|.++..- +|++||.- .-.|+||+..+.+.++.-..|...+..+...-.+..++.|.-=+.|.+.-.+. +....
T Consensus 830 Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~e 906 (1096)
T KOG1897|consen 830 GAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEE 906 (1096)
T ss_pred cceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEE
Confidence 345544432 56666544 57899999988877777778888999999888899999998777666655443 33433
Q ss_pred EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (695)
Q Consensus 634 ~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~ 671 (695)
..-..+..+.+++.+-.+.. ++ .+..+|.+.+--.+
T Consensus 907 vArD~~p~Wmtaveil~~d~-yl-gae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVEILDDDT-YL-GAENSGNLFTVRKD 942 (1096)
T ss_pred eehhhCccceeeEEEecCce-EE-eecccccEEEEEec
Confidence 44455778899998876543 33 55566766665443
No 454
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=77.44 E-value=31 Score=40.49 Aligned_cols=106 Identities=15% Similarity=0.174 Sum_probs=59.3
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCeEEEE--ecccCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCee
Q 005473 566 DGKLLATGGHDK------KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENPDYS 632 (695)
Q Consensus 566 dg~~LaSgs~Dg------~V~IWDl~t~~~~~~--l~~H~~~V~~v~~spdg~~LaTgs~Dg-----tIrvWDl~t~~~~ 632 (695)
+|++.++||.|+ +|..||..+...... +..-..... ++. -++.+.+.|+.|+ +|..||..+....
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 677888888664 456777766543321 111111111 222 2467778888776 3788999876653
Q ss_pred EEE-EecCCCCeEEEEEecCCCeEEEEEeCCC-----cEEEEECCCCeEE
Q 005473 633 LRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCA 676 (695)
Q Consensus 633 l~~-~~gh~~~V~sl~fspdg~~llaSgs~Dg-----~IriWDl~tg~~v 676 (695)
... +....+.+..+ ..+..+++.|+.|| +|..||..+.+..
T Consensus 505 ~v~~m~~~rs~~g~~---~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 505 MVAPMTSPRSAVGVV---VLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred EcccCccccccccEE---EECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 322 22222222222 23345788888775 6788888776543
No 455
>PRK10350 hypothetical protein; Provisional
Probab=77.32 E-value=18 Score=33.44 Aligned_cols=12 Identities=17% Similarity=-0.044 Sum_probs=4.9
Q ss_pred HHHHHhhhhhcc
Q 005473 57 SVFWDIFIARTN 68 (695)
Q Consensus 57 ~iFwDif~A~t~ 68 (695)
+.|...++...+
T Consensus 14 ~~~AqplN~~NN 25 (145)
T PRK10350 14 VGFAQPINTLNN 25 (145)
T ss_pred HHHHhhhhccCC
Confidence 344444444333
No 456
>PHA02790 Kelch-like protein; Provisional
Probab=76.55 E-value=56 Score=37.39 Aligned_cols=102 Identities=10% Similarity=-0.005 Sum_probs=52.2
Q ss_pred CCCEEEEEeCCC---cEEEEECCCCeEEEE--ecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE-EEEecC
Q 005473 566 DGKLLATGGHDK---KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGH 639 (695)
Q Consensus 566 dg~~LaSgs~Dg---~V~IWDl~t~~~~~~--l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l-~~~~gh 639 (695)
+|+..+.||.++ .+..||.++.+-... +.........+. -++.+.+.| |.+-+||.++..... ..+...
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~ 436 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVG---RNAEFYCESSNTWTLIDDPIYP 436 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEEC---CceEEecCCCCcEeEcCCCCCC
Confidence 677777777653 467788766543221 111111111222 245555666 357889988765421 112111
Q ss_pred CCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECCCCeE
Q 005473 640 STTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSC 675 (695)
Q Consensus 640 ~~~V~sl~fspdg~~llaSgs~D-----g~IriWDl~tg~~ 675 (695)
.... +++.. ++ .|++.||.+ ..|.+||..+++.
T Consensus 437 r~~~-~~~v~-~~-~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 437 RDNP-ELIIV-DN-KLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred cccc-EEEEE-CC-EEEEECCcCCCcccceEEEEECCCCeE
Confidence 1222 23322 33 477787754 3577888776654
No 457
>PRK10115 protease 2; Provisional
Probab=76.48 E-value=27 Score=41.94 Aligned_cols=73 Identities=8% Similarity=0.062 Sum_probs=50.5
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CC----eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC-----CcEEE
Q 005473 598 QWITDVRFSPSLSRLATSSA-DR----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRY 667 (695)
Q Consensus 598 ~~V~~v~~spdg~~LaTgs~-Dg----tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D-----g~Iri 667 (695)
-.+..+.|+|++++|+.+-+ +| .|++.|+.++......+.+- -..++|.+|+..|+++...+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 34667889999998877633 22 48899998765322333221 25699999998888776533 36888
Q ss_pred EECCCC
Q 005473 668 WSINNG 673 (695)
Q Consensus 668 WDl~tg 673 (695)
+++.++
T Consensus 204 h~lgt~ 209 (686)
T PRK10115 204 HTIGTP 209 (686)
T ss_pred EECCCC
Confidence 899887
No 458
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=75.65 E-value=32 Score=32.48 Aligned_cols=87 Identities=10% Similarity=0.073 Sum_probs=54.3
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCe-------eEEEEecCCCCeEEEEEec----CCCeEEEEEeCCCcEEEEEC
Q 005473 602 DVRFSPSLSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWSI 670 (695)
Q Consensus 602 ~v~~spdg~~LaTgs~DgtIrvWDl~t~~~-------~l~~~~gh~~~V~sl~fsp----dg~~llaSgs~Dg~IriWDl 670 (695)
.-+|......|+.++..++|.|++...... .++.+. -...|++|+-.+ ++..+|+.|+ ...|.+||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 345665666788888889999998764321 233333 445677776443 3455776777 568999999
Q ss_pred CCCeEEEEEecCCCcEEEEEE
Q 005473 671 NNGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 671 ~tg~~v~~~~~h~~~VtsVaf 691 (695)
....-+..-..+ +.|.+|.|
T Consensus 81 ~~N~d~Fyke~~-DGvn~i~~ 100 (136)
T PF14781_consen 81 ENNSDLFYKEVP-DGVNAIVI 100 (136)
T ss_pred ccCchhhhhhCc-cceeEEEE
Confidence 876555433333 55566554
No 459
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=74.96 E-value=55 Score=35.06 Aligned_cols=107 Identities=8% Similarity=0.105 Sum_probs=52.7
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEE---EEecccCCCe--EEEEEcCCCCEEEEEeC-----CCeEEEEECCCCC
Q 005473 566 DGKLLATGGHD-----KKAVLWCTESFTVK---STLEEHTQWI--TDVRFSPSLSRLATSSA-----DRTVRVWDTENPD 630 (695)
Q Consensus 566 dg~~LaSgs~D-----g~V~IWDl~t~~~~---~~l~~H~~~V--~~v~~spdg~~LaTgs~-----DgtIrvWDl~t~~ 630 (695)
++.+++.|+.+ ..|..||+.+.+.. ..+..-..+. .+++.. ++.+.+.|+. ...+.+||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 55666777754 35667777665431 2221111111 122222 4566677764 2358889988765
Q ss_pred eeE-EEEecCCCCeEEEEEecCCCeEEEEEeCCC----cEEEEECCCCeE
Q 005473 631 YSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSC 675 (695)
Q Consensus 631 ~~l-~~~~gh~~~V~sl~fspdg~~llaSgs~Dg----~IriWDl~tg~~ 675 (695)
... ..+... ......+...++ .|++.|+.++ .+.+||..+.+.
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECC-EEEEEcCCCCccccceEEEecCCCee
Confidence 421 112111 111112222233 4777777654 356888877654
No 460
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=74.36 E-value=22 Score=43.36 Aligned_cols=93 Identities=11% Similarity=0.050 Sum_probs=61.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEE-EeCCC-----eEEEEECCCCCeeEEEEecCC
Q 005473 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR-----TVRVWDTENPDYSLRTFTGHS 640 (695)
Q Consensus 567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaT-gs~Dg-----tIrvWDl~t~~~~l~~~~gh~ 640 (695)
+++.+.....+.+.|-|.........-..+...|.+-+|+|||+.|+- .+.++ .|++-|+++...-+..+....
T Consensus 319 tkiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~ 398 (912)
T TIGR02171 319 AKLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN 398 (912)
T ss_pred eeEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc
Confidence 444444433457888888776665441446889999999999999977 55555 488889987554334444445
Q ss_pred CCeEEEEEecCCCeEEEEE
Q 005473 641 TTVMSLDFHPSKEDLLCSC 659 (695)
Q Consensus 641 ~~V~sl~fspdg~~llaSg 659 (695)
..|..-....+|...|+-.
T Consensus 399 aaiprwrv~e~gdt~ivyv 417 (912)
T TIGR02171 399 AAIPRWRVLENGDTVIVYV 417 (912)
T ss_pred ccccceEecCCCCeEEEEE
Confidence 5666666667776655433
No 461
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=73.99 E-value=73 Score=36.54 Aligned_cols=118 Identities=16% Similarity=0.178 Sum_probs=63.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccC---CCeEEEEEcCCCCEEEEEeC-------------CCeEEEE
Q 005473 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRLATSSA-------------DRTVRVW 624 (695)
Q Consensus 561 v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~---~~V~~v~~spdg~~LaTgs~-------------DgtIrvW 624 (695)
+.+.++|.+++..+ ..++.+|+. |+.+....--. ..=+++.+.|+|.+|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66678888887665 778888885 55554443222 12356778889888877761 1123333
Q ss_pred ECCCCCeeEEEEe--cC-----------------------C--CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEE
Q 005473 625 DTENPDYSLRTFT--GH-----------------------S--TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (695)
Q Consensus 625 Dl~t~~~~l~~~~--gh-----------------------~--~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~ 677 (695)
| .+++. +..+. .| . -.+.++.+.+....|++|+=.-..|...|.++++...
T Consensus 230 d-~tG~v-v~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 230 D-PTGEV-VWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp --TTS-E-EEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred C-CCCCE-EEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence 4 33332 22111 00 0 2478999999667788777777789999999998888
Q ss_pred EEecCC
Q 005473 678 VFKNFF 683 (695)
Q Consensus 678 ~~~~h~ 683 (695)
.+..|.
T Consensus 308 ilg~~~ 313 (477)
T PF05935_consen 308 ILGPPG 313 (477)
T ss_dssp EES-ST
T ss_pred EeCCCC
Confidence 877664
No 462
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=73.42 E-value=12 Score=44.66 Aligned_cols=115 Identities=10% Similarity=0.141 Sum_probs=70.9
Q ss_pred CCcEEEEeeCCCcEEEEeCCCC-------CCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEc--CCCCEEEEEeC
Q 005473 505 MDRFVDDGSLDDNVESFLSPDD-------ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS--PDGKLLATGGH 575 (695)
Q Consensus 505 ~~~~lasgS~D~~V~lw~~~~~-------~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fs--pdg~~LaSgs~ 575 (695)
....|+.|..||.|..|....- ....+.. . ......+...+.. ..++..|+++ ...++||+++.
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~---~---~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsN 185 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSG---F---SRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSN 185 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccc---c---ccccCCCCeEeec-CCceeEEEEEecCcceEEEEecC
Confidence 3478888999999999954210 0000000 0 0011122233332 2368999998 88889999999
Q ss_pred CCcEEEEECCCC--eEE-EEecccCCCeEEEEEcCCC---C---EEEEEeCCCeEEEEEC
Q 005473 576 DKKAVLWCTESF--TVK-STLEEHTQWITDVRFSPSL---S---RLATSSADRTVRVWDT 626 (695)
Q Consensus 576 Dg~V~IWDl~t~--~~~-~~l~~H~~~V~~v~~spdg---~---~LaTgs~DgtIrvWDl 626 (695)
...|.||-.... +.. ..-..|..-|-+|+|-++. . .|++++-.|.+.+|++
T Consensus 186 s~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 186 SQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred CceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888988855432 111 1111356778899997642 2 6777888999988887
No 463
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.70 E-value=28 Score=39.20 Aligned_cols=129 Identities=12% Similarity=0.109 Sum_probs=70.7
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEe-cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee---
Q 005473 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--- 632 (695)
Q Consensus 559 ~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~--~~~~l-~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~--- 632 (695)
+.+-|...++.|++. ..|-+.-|-+.... ..-.+ -...++|.+|.|++|...||.--.|++|-+++.......
T Consensus 26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 344454444444333 33445556554322 11111 234679999999999999999999999999988432211
Q ss_pred EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEecCCCcEEEEEE
Q 005473 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf 691 (695)
..+.......|...+|...-. +. .-. +.-|-+|-+.. ...++..+.|...|..-.|
T Consensus 105 ~~~ck~k~~~IlGF~W~~s~e-~A-~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~y 161 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSSTE-IA-FIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMY 161 (657)
T ss_pred HHHhccCcceeEEEEEecCee-EE-EEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEE
Confidence 112222234477788876533 33 222 33456665543 2344445555555555555
No 464
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=71.78 E-value=17 Score=25.95 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=23.7
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCeEEEEecc
Q 005473 565 PDGKLLATGG-HDKKAVLWCTESFTVKSTLEE 595 (695)
Q Consensus 565 pdg~~LaSgs-~Dg~V~IWDl~t~~~~~~l~~ 595 (695)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677666655 478999999998888777654
No 465
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=71.33 E-value=79 Score=34.20 Aligned_cols=112 Identities=14% Similarity=0.212 Sum_probs=68.7
Q ss_pred eEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeEEEEec---------------ccCCCeEEEEEcCCCCEEEEEe
Q 005473 558 VESCHFSPDGKLLATGGHD------KKAVLWCTESFTVKSTLE---------------EHTQWITDVRFSPSLSRLATSS 616 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~D------g~V~IWDl~t~~~~~~l~---------------~H~~~V~~v~~spdg~~LaTgs 616 (695)
..+|++.++|.++++.-.+ ..|+.+|.. ++.+..+. .....+..|+++|+|..|+++.
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 4578887889888888778 888888876 55544331 1345688999999999666653
Q ss_pred C-----CC--e-------EEEE--ECCCCCeeEE--EEec-------CCCCeEEEEEecCCCeEEEEEe----CCCcEEE
Q 005473 617 A-----DR--T-------VRVW--DTENPDYSLR--TFTG-------HSTTVMSLDFHPSKEDLLCSCD----NNSEIRY 667 (695)
Q Consensus 617 ~-----Dg--t-------IrvW--Dl~t~~~~l~--~~~g-------h~~~V~sl~fspdg~~llaSgs----~Dg~Iri 667 (695)
. |+ . ++++ |..+...+.. .+.- ....|+.+.+.+++..++.--+ ....++|
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri 245 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRI 245 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEE
Confidence 2 22 1 4554 4444221122 2221 2456889999999885554333 2345555
Q ss_pred EEC
Q 005473 668 WSI 670 (695)
Q Consensus 668 WDl 670 (695)
+-+
T Consensus 246 ~~v 248 (326)
T PF13449_consen 246 YRV 248 (326)
T ss_pred EEE
Confidence 544
No 466
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=71.32 E-value=29 Score=36.13 Aligned_cols=118 Identities=19% Similarity=0.318 Sum_probs=64.8
Q ss_pred EEEEcCCCCEEEEEeC-C--CcEEEEECCC--CeEEEEec----ccCCCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCC
Q 005473 560 SCHFSPDGKLLATGGH-D--KKAVLWCTES--FTVKSTLE----EHTQWITDVRFSPSLSRLATSSADR-TVRVWDTENP 629 (695)
Q Consensus 560 ~v~fspdg~~LaSgs~-D--g~V~IWDl~t--~~~~~~l~----~H~~~V~~v~~spdg~~LaTgs~Dg-tIrvWDl~t~ 629 (695)
+=.|-+||++|.+|+. | ..|++++-.+ ..+...-. ....+--.+..-|||+.|+.|+.+. +.-+|..+..
T Consensus 71 gg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~ 150 (243)
T PF07250_consen 71 GGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGP 150 (243)
T ss_pred CcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccC
Confidence 3456789999999886 2 4578877533 11111100 1122333444567899998888764 3455554321
Q ss_pred C-eeEE--EEecC----CCC-eEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473 630 D-YSLR--TFTGH----STT-VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 630 ~-~~l~--~~~gh----~~~-V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~ 680 (695)
. .... .+..- ... =-.+...|+|+ +|+.+..++ .|||..+++.++.+.
T Consensus 151 ~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~-lFi~an~~s--~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 151 GPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGN-LFIFANRGS--IIYDYKTNTVVRTLP 206 (243)
T ss_pred CCCceeeecchhhhccCccccCceEEEcCCCC-EEEEEcCCc--EEEeCCCCeEEeeCC
Confidence 1 1111 11110 011 12456689998 555666544 567998887777766
No 467
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=70.51 E-value=50 Score=35.02 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~ 637 (695)
-..|+-.+||...+++...+.|--.|-.+++....--+....-..|...||+..-++-+.. -|.-.|-++.......+.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 4678888999999999888888888999998877666666677788888988877765433 455566665443222222
Q ss_pred c-C-CCCeEEEEEecCCCeEEEEEeC---------CCcEEEEECCC
Q 005473 638 G-H-STTVMSLDFHPSKEDLLCSCDN---------NSEIRYWSINN 672 (695)
Q Consensus 638 g-h-~~~V~sl~fspdg~~llaSgs~---------Dg~IriWDl~t 672 (695)
. | ........|.+.|. +.+++.. .+.|++|+...
T Consensus 143 ~~~a~~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfpaPq 187 (353)
T COG4257 143 LEHADANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFPAPQ 187 (353)
T ss_pred cccCCCcccceeeCCCcc-EEEeeccccceecCcccCceeeeccCC
Confidence 1 2 24467788898887 5556642 35677777654
No 468
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=70.12 E-value=75 Score=34.39 Aligned_cols=82 Identities=13% Similarity=0.102 Sum_probs=52.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC--------------------CCeEEEEE
Q 005473 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--------------------DRTVRVWD 625 (695)
Q Consensus 566 dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~--------------------DgtIrvWD 625 (695)
+|++.++-+..|.|..+|.++|+...... -.+....++|. |+++++|-. ..-|.|.|
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~-vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vid 288 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAF-LPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVID 288 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEE-CCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEE
Confidence 78888888889999999988776543332 23566778887 777766531 12366667
Q ss_pred CCCCCeeEE--EEecCCCCeEEEEEecC
Q 005473 626 TENPDYSLR--TFTGHSTTVMSLDFHPS 651 (695)
Q Consensus 626 l~t~~~~l~--~~~gh~~~V~sl~fspd 651 (695)
++++.. +. .+.+--..+..|.+-|.
T Consensus 289 l~tG~v-v~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 289 LNSGDV-VHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred CCCCCE-EEEEEeCCceeEEEEEEEecC
Confidence 777663 32 33344455666666665
No 469
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=69.70 E-value=4.1 Score=41.64 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHhhcCCCCC
Q 005473 11 MLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (695)
Q Consensus 11 ~L~~yIydyl~k~~~~~tA~af~~e~~~~~~ 41 (695)
-+|.-|.|||+..||.++|+.|.+|+++...
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~ 58 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAKESGIKPP 58 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhccccCCCCc
Confidence 5899999999999999999999999998763
No 470
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=69.00 E-value=1.6e+02 Score=31.43 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=35.0
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEE--EecccCCCeEEEEEcCCCCEEEEEeCCC----eEEEEECCCCCe
Q 005473 566 DGKLLATGGHD-----KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENPDY 631 (695)
Q Consensus 566 dg~~LaSgs~D-----g~V~IWDl~t~~~~~--~l~~H~~~V~~v~~spdg~~LaTgs~Dg----tIrvWDl~t~~~ 631 (695)
++++.+.|+.+ ..|.+||..+.+-.. .+... ......+..-++.+.+.|+.++ .+.+||+.+...
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 56666666642 357788887654322 12111 1112222233567778887664 356889887553
No 471
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.66 E-value=57 Score=41.20 Aligned_cols=73 Identities=8% Similarity=0.179 Sum_probs=48.2
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC----CCC-------Cee------------E-EEEecCCCCeEEEEEecC
Q 005473 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDT----ENP-------DYS------------L-RTFTGHSTTVMSLDFHPS 651 (695)
Q Consensus 596 H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl----~t~-------~~~------------l-~~~~gh~~~V~sl~fspd 651 (695)
....|.||....+|+.+++| .|| .||.+ ..+ +.| + .....+.++|..+.+...
T Consensus 177 dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred CCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 35678899977677666665 566 44443 111 111 1 112256678999988855
Q ss_pred CCeEEEEEeCCCcEEEEECCC
Q 005473 652 KEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 652 g~~llaSgs~Dg~IriWDl~t 672 (695)
+.++.+-+..|+|++||+..
T Consensus 254 -R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 -RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred -cceeeeeccCceEEEEEccC
Confidence 45888999999999999976
No 472
>PF10956 DUF2756: Protein of unknown function (DUF2756); InterPro: IPR020158 This entry contains proteins with no known function.
Probab=68.66 E-value=24 Score=31.31 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=8.7
Q ss_pred ccccchhhh-hHHHHHHHHHH
Q 005473 70 KHSESAASY-IESQVIKAREQ 89 (695)
Q Consensus 70 ~~s~~a~~y-iq~q~~qqqqq 89 (695)
.++.....| +.+++..+.+.
T Consensus 23 ~nnpnqpgy~~PSQQRMQ~qM 43 (104)
T PF10956_consen 23 TNNPNQPGYVIPSQQRMQQQM 43 (104)
T ss_pred CCCcCCCCCCCcHHHHHHHHH
Confidence 334444556 45444333333
No 473
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=68.60 E-value=1.6e+02 Score=31.06 Aligned_cols=115 Identities=11% Similarity=0.094 Sum_probs=73.3
Q ss_pred eCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC-----CCCeEEEEE
Q 005473 574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-----STTVMSLDF 648 (695)
Q Consensus 574 s~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh-----~~~V~sl~f 648 (695)
=.++.+.+||..+.+.+.++.- .+.=+.++ .++..|+.+.....|+++|..+.+. ++.+... -..+.-+.|
T Consensus 107 Wk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~g~pv~~LNELE~ 182 (264)
T PF05096_consen 107 WKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDNGRPVSNLNELEY 182 (264)
T ss_dssp SSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EETTEE---EEEEEE
T ss_pred ecCCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccce-EEEEEEEECCEECCCcEeEEE
Confidence 3478999999999999888753 33445565 3566777776677899999987654 3333221 134566777
Q ss_pred ecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec------------C---CCcEEEEEEeCCC
Q 005473 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN------------F---FESFVSVRVVQPR 695 (695)
Q Consensus 649 spdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~------------h---~~~VtsVaf~sPd 695 (695)
. +| .++|-.-....|...|..+|+++..+.. + .+....||| +|.
T Consensus 183 i-~G-~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAy-d~~ 241 (264)
T PF05096_consen 183 I-NG-KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAY-DPE 241 (264)
T ss_dssp E-TT-EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEE-ETT
T ss_pred E-cC-EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeE-eCC
Confidence 6 44 4777776777899999999999887741 1 245788888 763
No 474
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.90 E-value=4.8 Score=43.71 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC
Q 005473 8 ADKMLDVYIYDYLLKRKLHASAKAFQTEGKVST 40 (695)
Q Consensus 8 ~~~~L~~yIydyl~k~~~~~tA~af~~e~~~~~ 40 (695)
.++.|+.+|-|||+++||+++|..|.++..+.+
T Consensus 114 ~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~led 146 (389)
T KOG0396|consen 114 PRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLED 146 (389)
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhh
Confidence 367899999999999999999999999987764
No 475
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=67.44 E-value=1.1e+02 Score=32.86 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=40.3
Q ss_pred CCCEEEEEeCCCcEEEEECCC--CeEEEEecccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECC
Q 005473 566 DGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTE 627 (695)
Q Consensus 566 dg~~LaSgs~Dg~V~IWDl~t--~~~~~~l~~H~~~V~~v~~spdg~~LaTgs-~DgtIrvWDl~ 627 (695)
++++|+.|+++| +.+.|+.. .+..+.+ +...|+++...+.-+.|++-+ ....++++|+.
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 336899999999 55555654 3344333 466899999998777666554 34449999984
No 476
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=66.27 E-value=1.9e+02 Score=31.08 Aligned_cols=111 Identities=6% Similarity=0.005 Sum_probs=70.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 005473 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (695)
Q Consensus 556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~--~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l 633 (695)
+.+..+.++ +++.+.+..+.-++|.|+.+-..-..+. .-.+.-+++..+ |+++..+..|..+.+.|+.++..+.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCce
Confidence 345667776 5678888888889999997654322221 112444555554 7888888877778899998776543
Q ss_pred --EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 005473 634 --RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673 (695)
Q Consensus 634 --~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg 673 (695)
..+.........++.+ |++ .+.+..|+-+.|-|+...
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~-AYvA~~d~GL~ivDVSnp 201 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNY-AYVAWRDGGLTIVDVSNP 201 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCe-EEEEEeCCCeEEEEccCC
Confidence 2333333334566666 343 334556888999998754
No 477
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=65.57 E-value=1.5e+02 Score=31.84 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=49.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeE-----EEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-----DVRFSPSLSRLATSSADRTVRVWDT 626 (695)
Q Consensus 558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~-----~v~~spdg~~LaTgs~DgtIrvWDl 626 (695)
|++|....+|.+|+|+-.-.+|.+.|-++++.+..+.+....-. ..+|-.+-+++-.+..+++|.|||=
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 78888889999999999889999999999999999976522111 1333334444444556777777775
No 478
>PF10477 EIF4E-T: Nucleocytoplasmic shuttling protein for mRNA cap-binding EIF4E; InterPro: IPR018862 EIF4E-T is the transporter protein for shuttling the mRNA cap-binding protein EIF4E protein, targeting it for nuclear import. EIF4E-T contains several key binding domains including two functional leucine-rich NESs (nuclear export signals) between residues 438-447 and 613-638 in the human protein. The other two binding domains are an EIF4E-binding site, between residues 27-42 in Q9EST3 from SWISSPROT, and a bipartite NLS (nuclear localisation signals) between 194-211, and these lie in family EIF4E-T_N. EIF4E is the eukaryotic translation initiation factor 4E that is the rate-limiting factor for cap-dependent translation initiation [].
Probab=65.04 E-value=5.3 Score=46.79 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=12.4
Q ss_pred hhhHHHHHHhHHHhh
Q 005473 143 FAKAFTTKMYEDRLK 157 (695)
Q Consensus 143 ~~~~~~~~~~~~~~~ 157 (695)
|.++.-.|||++.=|
T Consensus 562 TPTSVlRKMta~kek 576 (578)
T PF10477_consen 562 TPTSVLRKMTADKEK 576 (578)
T ss_pred CcHHHHHHHHhhhcc
Confidence 778899999998644
No 479
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=64.60 E-value=75 Score=35.62 Aligned_cols=109 Identities=10% Similarity=0.079 Sum_probs=62.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-----EEEecc--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-----KSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (695)
Q Consensus 555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~-----~~~l~~--H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~ 627 (695)
...+..+.|.+++.+++++ .+|.+. |....++. ...+.. -...++++.|.+++..+++| .+|.|.+..-.
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~ 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDG 356 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCC
Confidence 3458899999999877665 456544 33444431 122211 12358899999876666555 56766665432
Q ss_pred CCCeeE-EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEE
Q 005473 628 NPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668 (695)
Q Consensus 628 t~~~~l-~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriW 668 (695)
-..... ..-..-....+.+.|.++++ .+++| .+|.|.-|
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G-~~G~il~~ 396 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKK-GFVLG-NDGVLLRY 396 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCc-eEEEe-CCcEEEEe
Confidence 211111 11123345688999987765 45454 47877655
No 480
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=64.58 E-value=1.5e+02 Score=32.24 Aligned_cols=102 Identities=12% Similarity=0.089 Sum_probs=63.7
Q ss_pred EEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eEEEEecCCCCeEEEEEecCCCeEEEEE
Q 005473 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (695)
Q Consensus 581 IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~-~l~~~~gh~~~V~sl~fspdg~~llaSg 659 (695)
|+|+.+++.+. .+. ....+.+|+ ++++.++=+..|.|..+|.+++.. ++..+ .+....++|. |..++++-
T Consensus 189 vidv~s~evl~--~GL-smPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~v---pG~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 189 VIDIPSGEVVA--SGL-SMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFL---PGFTRGLAFA--GDFAFVGL 259 (335)
T ss_pred EEEeCCCCEEE--cCc-cCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEEC---CCCCccccee--CCEEEEEe
Confidence 34665554431 121 122344554 467778888899999999987664 23333 3567788888 66555443
Q ss_pred eC-------------------CCcEEEEECCCCeEEEEEe--cCCCcEEEEEE
Q 005473 660 DN-------------------NSEIRYWSINNGSCAGVFK--NFFESFVSVRV 691 (695)
Q Consensus 660 s~-------------------Dg~IriWDl~tg~~v~~~~--~h~~~VtsVaf 691 (695)
|. ..-|.|.|+++|..+..++ +.-..+..|++
T Consensus 260 Sk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~v 312 (335)
T TIGR03032 260 SKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAV 312 (335)
T ss_pred ccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEE
Confidence 31 1347888999999887765 55566666665
No 481
>PLN02153 epithiospecifier protein
Probab=64.14 E-value=2.1e+02 Score=30.79 Aligned_cols=105 Identities=10% Similarity=0.009 Sum_probs=51.6
Q ss_pred CCCEEEEEeCC-----------CcEEEEECCCCeEEEEeccc------CCCeEEEEEcCCCCEEEEEeCC----------
Q 005473 566 DGKLLATGGHD-----------KKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSRLATSSAD---------- 618 (695)
Q Consensus 566 dg~~LaSgs~D-----------g~V~IWDl~t~~~~~~l~~H------~~~V~~v~~spdg~~LaTgs~D---------- 618 (695)
++++++.|+.+ ..|.+||..+.+-.. +... ......+.+ ++++++.|+.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~gG~~~ 213 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGAGFAVV--QGKIWVVYGFATSILPGGKSD 213 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcceEEEE--CCeEEEEeccccccccCCccc
Confidence 56666666653 247788887654322 2111 111112222 45566655432
Q ss_pred ---CeEEEEECCCCCeeEEEEec--CCC-CeEEEEEecCCCeEEEEEeCC--------------CcEEEEECCCCeE
Q 005473 619 ---RTVRVWDTENPDYSLRTFTG--HST-TVMSLDFHPSKEDLLCSCDNN--------------SEIRYWSINNGSC 675 (695)
Q Consensus 619 ---gtIrvWDl~t~~~~l~~~~g--h~~-~V~sl~fspdg~~llaSgs~D--------------g~IriWDl~tg~~ 675 (695)
..|.+||+.+.+.......+ ... ...+++.. + ..|++.|+.. ..|.++|+.+.+.
T Consensus 214 ~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W 288 (341)
T PLN02153 214 YESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV-G-KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW 288 (341)
T ss_pred eecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEE-C-CEEEEECcccCCccccccccccccccEEEEEcCccEE
Confidence 35889998876542211111 111 11222222 2 3477777741 2678888876654
No 482
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=64.05 E-value=2.5e+02 Score=31.67 Aligned_cols=147 Identities=11% Similarity=0.087 Sum_probs=81.3
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC----CC-CEEEEEeCCCcE
Q 005473 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP----DG-KLLATGGHDKKA 579 (695)
Q Consensus 505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp----dg-~~LaSgs~Dg~V 579 (695)
....++.||.+|.+++|....... ....+..-..-..+|..+..-. .. ..||+ -.-.++
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~---------------~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl 99 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEF---------------QPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKL 99 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCC---------------CCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEE
Confidence 347899999999999996533211 0001111112235666666532 22 23444 567788
Q ss_pred EEEECCC--C-------eEEEEecccCC--CeEEEEEcC----C-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCe
Q 005473 580 VLWCTES--F-------TVKSTLEEHTQ--WITDVRFSP----S-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643 (695)
Q Consensus 580 ~IWDl~t--~-------~~~~~l~~H~~--~V~~v~~sp----d-g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V 643 (695)
.||.+.. + -.+..+..|.- ..+.+++-| . ..+|..=+.||.+.+|+-+.-- ...+-...--.
T Consensus 100 ~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~~llP 177 (418)
T PF14727_consen 100 SVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPDFLLP 177 (418)
T ss_pred EEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCCCCCC
Confidence 8887721 1 12233344432 233333333 2 2466777999999999987522 22222222233
Q ss_pred EEEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473 644 MSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (695)
Q Consensus 644 ~sl~fspdg~~llaSgs~Dg~IriWDl 670 (695)
..++|++.-+ .|++++.+..|..|..
T Consensus 178 gPl~Y~~~tD-sfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 178 GPLCYCPRTD-SFVTASSSWTLECYKY 203 (418)
T ss_pred cCeEEeecCC-EEEEecCceeEEEecH
Confidence 4577777755 4457777778888875
No 483
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=62.99 E-value=39 Score=38.52 Aligned_cols=106 Identities=14% Similarity=0.186 Sum_probs=66.5
Q ss_pred EcCCCCEEEE-EeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCC-------EEEEEeCCCeEEEEECCCCCeeEE
Q 005473 563 FSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-------RLATSSADRTVRVWDTENPDYSLR 634 (695)
Q Consensus 563 fspdg~~LaS-gs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~-------~LaTgs~DgtIrvWDl~t~~~~l~ 634 (695)
...|..+|+. |+.-.+++-.|++.|+.+..+..|... -|.|.|... .-+.|-.+..|.-.|.+.....+.
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred ecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 3445666554 445567888899999999999887765 577777432 234555566676677765443232
Q ss_pred EEecCCCCeEEEEEec---CCCeEEEEEeCCCcEEEEECC
Q 005473 635 TFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSIN 671 (695)
Q Consensus 635 ~~~gh~~~V~sl~fsp---dg~~llaSgs~Dg~IriWDl~ 671 (695)
... ....++.-.|+. ....++|.++..|-||+||.-
T Consensus 553 v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi 591 (776)
T COG5167 553 VVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI 591 (776)
T ss_pred eee-ehhccccccccccccccCceEEEecCCCceeeehhh
Confidence 222 223343333432 223378899999999999953
No 484
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=62.22 E-value=2.4e+02 Score=30.77 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=62.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEecccC-CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC---CC
Q 005473 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH---ST 641 (695)
Q Consensus 566 dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~-~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh---~~ 641 (695)
+|+ |+.++.++.++.+|.++++.+....... ..+..-... ....++.++.|+.+...|..++.. +..+... ..
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~-~W~~~~~~~~~~ 187 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVV-GDGTVYVGTDDGHLYALNADTGTL-KWTYETPAPLSL 187 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEE-cCcEEEEecCCCeEEEEEccCCcE-EEEEecCCcccc
Confidence 666 7778889989999998899888876655 111111111 233444444788888888887764 3222211 11
Q ss_pred CeEEEEEecCCCeEEEEEeC--CCcEEEEECCCCeEEEEEe
Q 005473 642 TVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 642 ~V~sl~fspdg~~llaSgs~--Dg~IriWDl~tg~~v~~~~ 680 (695)
.+..--...++ .++.+.. ++.+.-.|+.+|...-..+
T Consensus 188 ~~~~~~~~~~~--~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 188 SIYGSPAIASG--TVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred ccccCceeecc--eEEEecCCCcceEEEEEccCCcEeeeee
Confidence 11111112222 2334444 5667777877777766543
No 485
>PHA02790 Kelch-like protein; Provisional
Probab=58.57 E-value=72 Score=36.54 Aligned_cols=105 Identities=9% Similarity=0.076 Sum_probs=52.1
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeEEEE--ecccCCCeEEEEEcCCCCEEEEEeCC--CeEEEEECCCCCee-EEE
Q 005473 566 DGKLLATGGHDK-----KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYS-LRT 635 (695)
Q Consensus 566 dg~~LaSgs~Dg-----~V~IWDl~t~~~~~~--l~~H~~~V~~v~~spdg~~LaTgs~D--gtIrvWDl~t~~~~-l~~ 635 (695)
++.+++.||.++ ++..||..+.+.... +.........+. -++.+.+.|+.+ .++..||..+.... +..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 345566666542 466788776543321 111111111222 356677788754 35888888764431 111
Q ss_pred EecCCCCeEEEEEecCCCeEEEEEeCCC---cEEEEECCCCeE
Q 005473 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSC 675 (695)
Q Consensus 636 ~~gh~~~V~sl~fspdg~~llaSgs~Dg---~IriWDl~tg~~ 675 (695)
+....... +++.. +| .|++.||.++ .+.+||.++.+.
T Consensus 349 l~~~r~~~-~~~~~-~g-~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 349 LLKPRCNP-AVASI-NN-VIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCCCCccc-EEEEE-CC-EEEEecCcCCCCccEEEEeCCCCEE
Confidence 11111111 22222 33 4777777553 477888876543
No 486
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=58.52 E-value=1.7 Score=48.70 Aligned_cols=106 Identities=14% Similarity=0.206 Sum_probs=71.7
Q ss_pred CCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEec-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 005473 555 TSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (695)
Q Consensus 555 ~~~V~~v~fspdg~~L-aSgs~Dg~V~IWDl~t~~~~~~l~-~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~ 632 (695)
++....++|..+|..+ +.+...+.+.|||+.+...- .++ +-+..-.-+.|++....++.+-..|.+.|++..+.+.
T Consensus 74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~- 151 (615)
T KOG2247|consen 74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRR- 151 (615)
T ss_pred chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhccCcchHHHHhhccCCccccccccccceEEEeccchhh-
Confidence 3446678888887754 44556788999999753321 121 1122222378999888999998899999999988664
Q ss_pred EEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (695)
Q Consensus 633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~ 664 (695)
+-....|...+++++|.+.+. .+.|+.|..
T Consensus 152 iiv~Gkh~RRgtq~av~lEd~--vil~dcd~~ 181 (615)
T KOG2247|consen 152 IIVMGKHQRRGTQIAVTLEDY--VILCDCDNT 181 (615)
T ss_pred hhhhcccccceeEEEecccce--eeecCcHHH
Confidence 333344889999999999865 334555543
No 487
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=57.53 E-value=1.3e+02 Score=32.69 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=37.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eEEEE----ecCCCCeEEEEEecC---CCeEEEEEe
Q 005473 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTF----TGHSTTVMSLDFHPS---KEDLLCSCD 660 (695)
Q Consensus 600 V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~--~l~~~----~gh~~~V~sl~fspd---g~~llaSgs 660 (695)
.+.|+|.|++++|++ -..|.|++++. .+.. .+..+ .........++|+|+ ...++++.+
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 578999999877776 45999999993 3332 22222 223356799999994 334554544
No 488
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.14 E-value=1.4e+02 Score=35.86 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=27.9
Q ss_pred CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (695)
Q Consensus 641 ~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~ 680 (695)
+.+..+..+|+.. +||--..+|.|.+-+++..++...+.
T Consensus 217 ~~~~ki~VS~n~~-~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRR-FLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcc-eEEEEecCCcEEEEecchhhhhhccC
Confidence 3466677888876 56666778889888887766665555
No 489
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=57.14 E-value=41 Score=23.84 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=19.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CC--CcEEEE
Q 005473 553 ASTSKVESCHFSPDGKLLATGG-HD--KKAVLW 582 (695)
Q Consensus 553 ~H~~~V~~v~fspdg~~LaSgs-~D--g~V~IW 582 (695)
.......+..|+|||+.|+-++ .+ |...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3444578999999999766554 45 666665
No 490
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=55.93 E-value=2.9e+02 Score=29.77 Aligned_cols=144 Identities=10% Similarity=0.051 Sum_probs=84.7
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (695)
Q Consensus 507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t 586 (695)
.++..+.++.-+++++..+...+ +.+..+.. .+.-.|+.. .|++.+.+..|.-+.+.|+.+
T Consensus 97 ~yvyvad~ssGL~IvDIS~P~sP----------------~~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdvsd 157 (370)
T COG5276 97 EYVYVADWSSGLRIVDISTPDSP----------------TLIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred cEEEEEcCCCceEEEeccCCCCc----------------ceeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEECCC
Confidence 55556667777777766443221 12222211 122345544 588998888666677888865
Q ss_pred Ce---EEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec-CCCCeEEEEEecCCCeEEEEEeCC
Q 005473 587 FT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN 662 (695)
Q Consensus 587 ~~---~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g-h~~~V~sl~fspdg~~llaSgs~D 662 (695)
.. ....+....+.-+.++.+ |++...+++|+-+.+-|+..+..++..-.- ....+.++..+++.. +++.. +
T Consensus 158 pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~vvy--~ 232 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YLVVY--D 232 (370)
T ss_pred CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee-EEEEc--c
Confidence 32 333444445555677776 678888889999999999887654432222 223678887777633 33222 3
Q ss_pred CcEEEEECCCCe
Q 005473 663 SEIRYWSINNGS 674 (695)
Q Consensus 663 g~IriWDl~tg~ 674 (695)
.-+.+-|..+.+
T Consensus 233 egvlivd~s~~s 244 (370)
T COG5276 233 EGVLIVDVSGPS 244 (370)
T ss_pred cceEEEecCCCC
Confidence 446666665544
No 491
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=55.23 E-value=2.7e+02 Score=29.72 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=45.0
Q ss_pred CCCeEEEEEcCCCCEEEEEe------CCCcEEEEECCCCeEEEEecc-----cCCCeEEEEEcC-CCC-EEEEEe-C--C
Q 005473 555 TSKVESCHFSPDGKLLATGG------HDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSP-SLS-RLATSS-A--D 618 (695)
Q Consensus 555 ~~~V~~v~fspdg~~LaSgs------~Dg~V~IWDl~t~~~~~~l~~-----H~~~V~~v~~sp-dg~-~LaTgs-~--D 618 (695)
.+.|+++.|..+.++++.|. ....+..||+.+.... .+.+ -.++|..+.+.. ++. +.+.|. . +
T Consensus 36 ~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~ 114 (281)
T PF12768_consen 36 SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGS 114 (281)
T ss_pred eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEEEeeccCCceEEEeceecCCC
Confidence 45699999997777777765 3456888998776432 3332 137788888754 333 444443 2 3
Q ss_pred CeEEEEECC
Q 005473 619 RTVRVWDTE 627 (695)
Q Consensus 619 gtIrvWDl~ 627 (695)
..|..||=.
T Consensus 115 ~~l~~~dGs 123 (281)
T PF12768_consen 115 TFLMKYDGS 123 (281)
T ss_pred ceEEEEcCC
Confidence 347777644
No 492
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=54.40 E-value=3.5e+02 Score=30.19 Aligned_cols=122 Identities=15% Similarity=0.164 Sum_probs=78.1
Q ss_pred eEEEEE--cC-CCC-EEEEEeCCCcEEEEECC---CC----eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473 558 VESCHF--SP-DGK-LLATGGHDKKAVLWCTE---SF----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (695)
Q Consensus 558 V~~v~f--sp-dg~-~LaSgs~Dg~V~IWDl~---t~----~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl 626 (695)
++.+|+ ++ +|. +++....+|.+.-|-+. .+ +.++.|.. .+.+..|........|+.|-.|.-|+-|+.
T Consensus 158 ~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~A 236 (381)
T PF02333_consen 158 PYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDA 236 (381)
T ss_dssp EEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred ceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEec
Confidence 565655 43 455 66677788988877653 33 45667754 457889999988889999999999999998
Q ss_pred CCCC----eeEEEEec--CCCCeEEEEEec--CC-CeEEEEEeCCCcEEEEECCC-CeEEEEEe
Q 005473 627 ENPD----YSLRTFTG--HSTTVMSLDFHP--SK-EDLLCSCDNNSEIRYWSINN-GSCAGVFK 680 (695)
Q Consensus 627 ~t~~----~~l~~~~g--h~~~V~sl~fsp--dg-~~llaSgs~Dg~IriWDl~t-g~~v~~~~ 680 (695)
+... ..+....+ ....|..|++-. ++ .+||+|.-.+++..|||... ...+..|.
T Consensus 237 ep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~ 300 (381)
T PF02333_consen 237 EPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFR 300 (381)
T ss_dssp SCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEE
T ss_pred CCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEE
Confidence 6322 12222222 345677777743 44 46777777889999999874 35555554
No 493
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=53.43 E-value=53 Score=28.53 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=34.5
Q ss_pred CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (695)
Q Consensus 619 gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t 672 (695)
+.|..||..+ +.....+ -.....+.++|+++.++++....+.|++|...+
T Consensus 36 ~~Vvyyd~~~---~~~va~g-~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKE---VKVVASG-FSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCE---eEEeecc-CCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 3455666543 1222222 234678999999999999999999999998753
No 494
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=53.42 E-value=3.9e+02 Score=33.50 Aligned_cols=104 Identities=14% Similarity=0.124 Sum_probs=59.3
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec-
Q 005473 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG- 638 (695)
Q Consensus 562 ~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~--~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g- 638 (695)
+.+|-..++++| ....+++||+...++++..+ .-...|+.+++. +.+++.|..--.|+++-.+.....+..+.+
T Consensus 940 Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD 1016 (1205)
T KOG1898|consen 940 AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLIVFADD 1016 (1205)
T ss_pred EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEEEEeCC
Confidence 344544444443 45789999998766654442 225667777775 567877765555555555443333444433
Q ss_pred -CCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473 639 -HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (695)
Q Consensus 639 -h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl 670 (695)
-..+|+++.+-..+. ++.++.=|.|.+-.+
T Consensus 1017 ~~pR~Vt~~~~lD~~t--vagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1017 PVPRHVTALELLDYDT--VAGADRFGNIAVVRI 1047 (1205)
T ss_pred CccceeeEEEEecCCc--eeeccccCcEEEEEC
Confidence 235677777765544 445555555544443
No 495
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=52.24 E-value=35 Score=35.58 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=51.7
Q ss_pred EEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEECCC-CCeeEEEE----ecCCCCeEEEEEecC
Q 005473 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D--RTVRVWDTEN-PDYSLRTF----TGHSTTVMSLDFHPS 651 (695)
Q Consensus 580 ~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-D--gtIrvWDl~t-~~~~l~~~----~gh~~~V~sl~fspd 651 (695)
.+||+.+.+....-......+..-.+-+||++|.+|+. | ..||+++... ...|-..- -....+=-++..-||
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 47888876654322223334444567789999999875 3 3588888654 11111110 011223334555679
Q ss_pred CCeEEEEEeCCCcEEEEEC
Q 005473 652 KEDLLCSCDNNSEIRYWSI 670 (695)
Q Consensus 652 g~~llaSgs~Dg~IriWDl 670 (695)
|+.+++.|....+..+|.-
T Consensus 129 G~vlIvGG~~~~t~E~~P~ 147 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPP 147 (243)
T ss_pred CCEEEEeCcCCCcccccCC
Confidence 9866666666556667765
No 496
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=52.00 E-value=24 Score=42.07 Aligned_cols=92 Identities=13% Similarity=0.217 Sum_probs=53.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCe-----EEEEECCC---CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 005473 598 QWITDVRFSPSLSRLATSSADRT-----VRVWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (695)
Q Consensus 598 ~~V~~v~~spdg~~LaTgs~Dgt-----IrvWDl~t---~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWD 669 (695)
+.-.-+.|-|.|..++|-+.||. |+++.... +.. ..-.+....+..++|+-... +++ ......|.+|-
T Consensus 247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef--~lr~~~dEk~~~~~wn~~s~-vla-v~~~n~~~lwt 322 (1243)
T COG5290 247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEF--DLRVGCDEKAFLENWNLLST-VLA-VAEGNLLKLWT 322 (1243)
T ss_pred cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCc--cccCCchhhhhhhhhhHHHH-HHH-HhhcceEEEEE
Confidence 33445899999999999776653 55554432 111 11122334567778876654 332 23356799998
Q ss_pred CCCCeEEEEEecCCCcEEEEEEeCC
Q 005473 670 INNGSCAGVFKNFFESFVSVRVVQP 694 (695)
Q Consensus 670 l~tg~~v~~~~~h~~~VtsVaf~sP 694 (695)
..+-.......-.-..+.-|.| ||
T Consensus 323 tkNyhWYLK~e~~ip~~s~vkw-hp 346 (1243)
T COG5290 323 TKNYHWYLKVERQIPGISYVKW-HP 346 (1243)
T ss_pred ccceEEEEEEeecCCCcceeee-cc
Confidence 7765444333333344556677 76
No 497
>PLN02153 epithiospecifier protein
Probab=51.71 E-value=1.8e+02 Score=31.27 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=34.3
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEE--Eecc---cCCCeEEEEEcCCCCEEEEEeCC-----------CeEEEE
Q 005473 566 DGKLLATGGHD-----KKAVLWCTESFTVKS--TLEE---HTQWITDVRFSPSLSRLATSSAD-----------RTVRVW 624 (695)
Q Consensus 566 dg~~LaSgs~D-----g~V~IWDl~t~~~~~--~l~~---H~~~V~~v~~spdg~~LaTgs~D-----------gtIrvW 624 (695)
++++++.|+.+ ..|.+||..+.+-.. .+.. ........+..-++.+++.|+.+ ..|.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 45666666653 357788887654322 1110 01111111122345667777754 247889
Q ss_pred ECCCCCe
Q 005473 625 DTENPDY 631 (695)
Q Consensus 625 Dl~t~~~ 631 (695)
|+.+...
T Consensus 165 d~~~~~W 171 (341)
T PLN02153 165 NIADGKW 171 (341)
T ss_pred ECCCCeE
Confidence 9887544
No 498
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=51.08 E-value=17 Score=44.96 Aligned_cols=50 Identities=46% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhcccCC--CCCCCCCC
Q 005473 90 QQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQH--LNDTGDDL 139 (695)
Q Consensus 90 qqqq~~~~~~~qq~qqqq~qq~~~~~~~q~~qq~q~~~~~~~--~~~~~~~~ 139 (695)
|++|||+-|.-|++|--||||+.+||-+++=+|-+-+.++.+ +..+.|.+
T Consensus 1856 q~~qqq~iq~lq~~q~lqqqqq~~qq~~~~~~q~~sq~~q~p~~~~s~~~~~ 1907 (2131)
T KOG4369|consen 1856 QQQQQQQIQHLQQQQALQQQQQRIQQFQQQYQQHQSQSSQQPSDLMSSKFSM 1907 (2131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCCCCcccccccchh
No 499
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=49.96 E-value=3.6e+02 Score=29.05 Aligned_cols=137 Identities=12% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCc------EEEEECCC----------CeEEEEecccCCCeE-------EEEEcCCCCEE
Q 005473 556 SKVESCHFSPDGKLLATGGHDKK------AVLWCTES----------FTVKSTLEEHTQWIT-------DVRFSPSLSRL 612 (695)
Q Consensus 556 ~~V~~v~fspdg~~LaSgs~Dg~------V~IWDl~t----------~~~~~~l~~H~~~V~-------~v~~spdg~~L 612 (695)
+.+..+.+.+++..+++.+++|. +..+++.. ...+.........+. .|++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Q ss_pred EEEeCC------CeEEEEECCCCCeeEEEE---------------ecCCCCeEEEEEecCCCeEEEEEeCC---------
Q 005473 613 ATSSAD------RTVRVWDTENPDYSLRTF---------------TGHSTTVMSLDFHPSKEDLLCSCDNN--------- 662 (695)
Q Consensus 613 aTgs~D------gtIrvWDl~t~~~~l~~~---------------~gh~~~V~sl~fspdg~~llaSgs~D--------- 662 (695)
++.=.+ ..|+.+|.. +.. +..+ ........+|+++|+|..+++..-.-
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~-~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRV-IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-Ccc-cceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Q ss_pred ------CcEEEEECCC-CeEEEEEe----c-----CCCcEEEEEEeCCC
Q 005473 663 ------SEIRYWSINN-GSCAGVFK----N-----FFESFVSVRVVQPR 695 (695)
Q Consensus 663 ------g~IriWDl~t-g~~v~~~~----~-----h~~~VtsVaf~sPd 695 (695)
-.|..||..+ +.....+. . ....|+.+.+ -|+
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~a-l~d 225 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAA-LPD 225 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEE-ECC
No 500
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=48.74 E-value=6.8e+02 Score=32.05 Aligned_cols=179 Identities=12% Similarity=0.089 Sum_probs=0.0
Q ss_pred CCCCcEEEEee---------CCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEE
Q 005473 503 TDMDRFVDDGS---------LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG 573 (695)
Q Consensus 503 ~~~~~~lasgS---------~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSg 573 (695)
...+.|++.|. ..|.+.+| +.+.-+....+..+...++.+....-+=+-.+.+.-.-+|++|
T Consensus 1043 ~~~k~ylavGT~~~~gEDv~~RGr~hi~---------diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~ 1113 (1366)
T KOG1896|consen 1043 KGKKPYLAVGTAFIQGEDVPARGRIHIF---------DIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSS 1113 (1366)
T ss_pred cCCcceEEEEEeecccccccCcccEEEE---------EEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEc
Q ss_pred eCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCC--eEEEEEecC
Q 005473 574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPS 651 (695)
Q Consensus 574 s~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~--V~sl~fspd 651 (695)
. .-+|.||+++....+.-+---.-.++-....--.++|+.|.--+.|.+.-.......+..+...... |+++.|--+
T Consensus 1114 ~-GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVd 1192 (1366)
T KOG1896|consen 1114 Q-GQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVD 1192 (1366)
T ss_pred c-CcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEc
Q ss_pred CCeE-EEEEeCCCcEEEEECC--------CCeEEEEEecCCCcEEEEEE
Q 005473 652 KEDL-LCSCDNNSEIRYWSIN--------NGSCAGVFKNFFESFVSVRV 691 (695)
Q Consensus 652 g~~l-laSgs~Dg~IriWDl~--------tg~~v~~~~~h~~~VtsVaf 691 (695)
|..+ +++++.|+.|++|-.. .-+.++.-.-|.+.+.+.-|
T Consensus 1193 g~~L~flvsDa~rNi~vy~Y~Pe~~eS~~G~RLv~radfhvg~~vs~m~ 1241 (1366)
T KOG1896|consen 1193 GSNLSFLVSDADRNIHVYMYAPENIESLSGQRLVRRADFHVGAHVSTMF 1241 (1366)
T ss_pred CCeeEEEEEcCCCcEEEEEeCCCCccccCcceeeeeeeeEeccceeeeE
Done!