BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005474
         (695 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic [Vitis vinifera]
          Length = 701

 Score = 1067 bits (2759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/707 (73%), Positives = 593/707 (83%), Gaps = 25/707 (3%)

Query: 1   MASNLCYSTCSL------------FSTPKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSL 48
           MA +LC S  SL            FS     R   +FSF + +SLS +S+T LQ   VSL
Sbjct: 1   MAYHLCSSPSSLCHDHHYLHNSLSFSRKSRLRSFNSFSF-KPNSLSLHSRTFLQITHVSL 59

Query: 49  -----QETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLV 103
                QETQ ++ + +  N Q P  KT    KSYIWVNP+SPRASKL++ SYD RY SLV
Sbjct: 60  EDPIPQETQKADAS-NPPNSQDPDRKT----KSYIWVNPRSPRASKLRQHSYDARYASLV 114

Query: 104 KLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASK 163
           K+A  LDSC ATE+DV  VLRCLGD  LEQD VI+LNNMTNP+TA LA  +F  +LK S+
Sbjct: 115 KIAESLDSCEATEEDVSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLKPSR 174

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           EVILYNVT+KVFRKCR+LD+AE+LFD+ML+RGVKPDN+TFST+ISCAR+++LPNKAVEWF
Sbjct: 175 EVILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWF 234

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E+MP FGC PD +TYS+MIDAYGRAGNV+MA  LYDRAR EKWRIDP  FSTLI++YG +
Sbjct: 235 EKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMS 294

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           GNFDGCLNVYEEMKA+GVKPN++ YN LLD MGRAKRPWQ K IYKEMT+NGL P+W TY
Sbjct: 295 GNFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTY 354

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           A+LLRAYGRARY ED L VY+EMKEKG++LSV LYNTLLAMCADVGYT+EA  IFEDMKS
Sbjct: 355 AALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKS 414

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S NC PDSWTFSS+ITI SC GKVSEAEAM N MLEAGFEPN+FVLTSLIQCYGKA RTD
Sbjct: 415 SGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTD 474

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEE 523
           +VVR  +RL EL ITPDDRFCGC+LNVMTQ+PKEELGKL++C++K+N KLG VVKLLLEE
Sbjct: 475 EVVRTFDRLLELDITPDDRFCGCMLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLLEE 534

Query: 524 QDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQ 583
           Q+ EG F+KEA+ELF+SIS DVKKAYCNCLIDLCVNLNLLE AC+L +LGLTLE+Y DIQ
Sbjct: 535 QNGEGTFRKEASELFDSISADVKKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQ 594

Query: 584 SRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGL 643
           S+SPTQWSLHLKSLSLGAALTALHIW+NDLSKA+E GEE P +LGINTGHGKHKYSDKGL
Sbjct: 595 SKSPTQWSLHLKSLSLGAALTALHIWMNDLSKAVEVGEELPAVLGINTGHGKHKYSDKGL 654

Query: 644 ASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSS--LVSV 688
           ASVFESHLKELNAPFH++PDKVGWFLTT+ AA SWLESRS+  LV+V
Sbjct: 655 ASVFESHLKELNAPFHEAPDKVGWFLTTKVAATSWLESRSAPELVAV 701


>gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera]
          Length = 701

 Score = 1056 bits (2731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/698 (73%), Positives = 590/698 (84%), Gaps = 18/698 (2%)

Query: 3   SNLCYSTCSLFSTPKLGR----RTF-TFSFQRDDSLSFYSKTSLQKRSVSL-----QETQ 52
           S+LC+    L ++    R    R+F +FSF + +SLS +S+T LQ   VSL     QETQ
Sbjct: 10  SSLCHDHHYLHNSLSFSRKSRLRSFNSFSF-KPNSLSLHSRTFLQITHVSLEDPIPQETQ 68

Query: 53  SSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSC 112
            ++ + +  N Q P  KT    KSYIWVNP+SPRASKL++ SYD RY SLVK+A  LDSC
Sbjct: 69  KADAS-NPPNSQDPDRKT----KSYIWVNPRSPRASKLRQHSYDARYASLVKIAESLDSC 123

Query: 113 SATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTM 172
            ATE+DV  VLRCLGD  LEQD VI+LNNMTNP+TA LA  +F  +LK S+EVILYNVT+
Sbjct: 124 EATEEDVSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLKPSREVILYNVTL 183

Query: 173 KVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCD 232
           KVFRKCR+LD AE+LFD+ML+RGVKPDN+TFST+ISCAR+++LPNKAVEWFE+MP FGC 
Sbjct: 184 KVFRKCRNLDXAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPEFGCH 243

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           PD +TYS+MIDAYGRAGNV+MA  LYDRAR EKWRIDP  FSTLI++YG +GNFDGCLNV
Sbjct: 244 PDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNV 303

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           YEEMKA+GVKPN++ YN LLD MGRAKRPWQ K IYKEMT+NGL  +W TYA+LLRAYGR
Sbjct: 304 YEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAYGR 363

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
           ARY ED L VY+EMKEKG++LSV LYNTLLAMCADVGYT+EA  IFEDMKSS NC PDSW
Sbjct: 364 ARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSW 423

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           TFSS+ITI SC GKVSEAEAM N MLEAGFEPN+FVLTSLIQCYGKA RTD+VVR  +RL
Sbjct: 424 TFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRL 483

Query: 473 PELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKK 532
            EL ITPDDRFCGC+LNVMTQ+PKEELGKL++C++K+N KLG VVKLLLEEQ+ EG F+K
Sbjct: 484 LELDITPDDRFCGCMLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLLEEQNGEGTFRK 543

Query: 533 EATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSL 592
           EA+ELF+SIS DV KAYCNCLIDLCVNLNLLE AC+L +LGLTLE+Y DIQS+SPTQWSL
Sbjct: 544 EASELFDSISADVXKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQSKSPTQWSL 603

Query: 593 HLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLK 652
           HLKSLSLGAALTALHIW+NDLSKA+E GEE P +LGINTGHGKHKYSDKGLASVFESHLK
Sbjct: 604 HLKSLSLGAALTALHIWMNDLSKAVEVGEELPAVLGINTGHGKHKYSDKGLASVFESHLK 663

Query: 653 ELNAPFHDSPDKVGWFLTTEAAAKSWLESRSS--LVSV 688
           ELNAPFH++PDKV WFLTT+ AA SWLESRS+  LV+V
Sbjct: 664 ELNAPFHEAPDKVXWFLTTKVAATSWLESRSAPELVAV 701


>gi|449443502|ref|XP_004139516.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Cucumis sativus]
 gi|449492820|ref|XP_004159111.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Cucumis sativus]
          Length = 704

 Score = 1004 bits (2596), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/701 (68%), Positives = 581/701 (82%), Gaps = 20/701 (2%)

Query: 1   MASNLCYSTCSLFSTPKLGRRTFTFSFQRDDSLS------------FYSKTSLQKRSVSL 48
           MA  LCYS  + F+       + T   QR  +LS             +SK  LQ  +VSL
Sbjct: 1   MAFQLCYSPPTFFTEHHFLSNSLTP--QRKTTLSNSSPLFKLSPIPRHSKPFLQITNVSL 58

Query: 49  QE-----TQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLV 103
           QE     TQ++ P+   +  +YP  K+GSS  S +WVNP+SPRASKL+++SY+ RY SL+
Sbjct: 59  QEHAPQDTQNTIPSA-DEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLI 117

Query: 104 KLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASK 163
           +++  LDS +  E DV  VL+ +G++ LE+D +++LNNM+N  TA LAL YF + LK+SK
Sbjct: 118 RVSESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSK 177

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I YNVT+KVFRKCRD++ AE+LF++M++RGVKPDNVTFST+ISCAR+ +LP+KAVEWF
Sbjct: 178 QTIFYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFSTIISCARLCSLPSKAVEWF 237

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E+MPSF C+PD +TYS+MIDAYGRAGNV+MAF LYDRAR E WRIDP  FST+IK++G A
Sbjct: 238 EKMPSFDCNPDDVTYSTMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVA 297

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           GN+DGCLNVYEEMKAIG+KPN++ YN LLD MGRAKRPWQ+KTIYKEM  NG SP+W TY
Sbjct: 298 GNYDGCLNVYEEMKAIGIKPNLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATY 357

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           ASLLRAYGRARYGED L VY+EMKEKG+QL+V LYNTLLAMCADVGY +EA EIF+DMKS
Sbjct: 358 ASLLRAYGRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKS 417

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S  C PDSWTFSSMITI SC GKVSEAE M N+M+EAGF+PN+FVLTSLIQCYGKA+R D
Sbjct: 418 SGTCSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVD 477

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEE 523
           DVVR  N+L ELG+TPDDRFCGCLLNV+TQTPK ELGKL++CV ++N KLG+VV+LLL E
Sbjct: 478 DVVRTFNQLIELGLTPDDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGE 537

Query: 524 QDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQ 583
           QD EG+F+ EA+ELF+ +S DV+KAYCNCLIDLCVNL+LL+ AC+LL+LGLTL++Y D+Q
Sbjct: 538 QDKEGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQ 597

Query: 584 SRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGL 643
           SRSPTQWSL+LK LSLGAALTALH+WI DL+K LESGEE PPLLGINTGHGKHKYSDKGL
Sbjct: 598 SRSPTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGL 657

Query: 644 ASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSS 684
           ASVFESHLKELNAPFH++P+KVGWFLTT+ AAKSWLESRSS
Sbjct: 658 ASVFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSS 698


>gi|26452823|dbj|BAC43491.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 702

 Score =  972 bits (2512), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/684 (66%), Positives = 555/684 (81%), Gaps = 5/684 (0%)

Query: 10  CSLFST-PKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHG 68
           C+L S  PK   R+F  S+  + S  F+S+  LQ   VS+QE    +      +   P  
Sbjct: 21  CNLLSVYPKSTPRSFLSSYNPNSS-HFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIP 79

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGD 128
           +  +S KSY+WVNPKSPRAS+L+ KSYD+RY+SL+KLA  LD+C   E DV  V+   G 
Sbjct: 80  EPTAS-KSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDACKPNEADVCDVITGFGG 138

Query: 129 DFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLF 188
              EQD V+ LNNMTNP+TA L L      +K S+EVILYNVTMKVFRK +DL+K+E+LF
Sbjct: 139 KLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLF 198

Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
           D+ML+RG+KPDN TF+T+ISCAR N +P +AVEWFE+M SFGC+PD +T ++MIDAYGRA
Sbjct: 199 DEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRA 258

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           GNV+MA  LYDRAR EKWRID   FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++ Y
Sbjct: 259 GNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIY 318

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N L+D+MGRAKRPWQ K IYK++  NG +PNW+TYA+L+RAYGRARYG+D L++YREMKE
Sbjct: 319 NRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKE 378

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
           KG+ L+V LYNTLL+MCAD+GY DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+VS
Sbjct: 379 KGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVS 438

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           EAEA   +M EAGFEP LFVLTS+IQCYGKA++ DDVVR  +++ ELGITPDDRFCGCLL
Sbjct: 439 EAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLL 498

Query: 489 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDVKK 547
           NVMTQTP EE+GKL+ CVEK+  KLG VVK+L+EEQ+  EG FKKEA+EL +SI  DVKK
Sbjct: 499 NVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKK 558

Query: 548 AYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALH 607
           AY NCLIDLCVNLN LE AC++L+LGL  ++YT +QS+S TQWSLHLKSLSLGAALTALH
Sbjct: 559 AYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALH 618

Query: 608 IWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 666
           +W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVG
Sbjct: 619 VWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVG 678

Query: 667 WFLTTEAAAKSWLESRSSLVSVPA 690
           WFLTT  AAK+WLESR S   V A
Sbjct: 679 WFLTTSVAAKAWLESRRSAGGVSA 702


>gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa]
 gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa]
          Length = 700

 Score =  969 bits (2505), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/697 (67%), Positives = 564/697 (80%), Gaps = 16/697 (2%)

Query: 1   MASNLCYSTCSLF----STPKLGRRTFT--------FSFQRDDSLSFYSK-TSLQKRSVS 47
           MA NLC S  SL+    +TP    R           +   + ++LS  S+ TSLQ  +VS
Sbjct: 1   MAYNLCSSPSSLYKPLCNTPSSSSRDSKSRNLNNNFYDSSKINTLSSQSRATSLQITNVS 60

Query: 48  LQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAA 107
           LQ+ +   P + +        KTGSS KSYIWVNPKS RAS L++ SYD +Y SLV  A 
Sbjct: 61  LQDEEL--PRQETSKDSNFKEKTGSSSKSYIWVNPKSSRASILRKSSYDAKYTSLVNAAK 118

Query: 108 DLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVIL 167
            L+SCS  +DDVF+VL       LEQD V+ILNNM+NPDTA LAL +F  +LK ++EV++
Sbjct: 119 YLNSCSPNKDDVFNVLSKFDGKLLEQDAVVILNNMSNPDTALLALKFFQERLKFNREVVV 178

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YNVT+KVFRK RDLDKAE+LFD+ML+RGVKPDN TFST+ISCAR+ NL +KAVEWFE+MP
Sbjct: 179 YNVTLKVFRKGRDLDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLADKAVEWFEKMP 238

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           SFG +PD +T S+MID+YGRAGNVE A  LYDRAR  +WR+D  AFSTLI++Y  AGNFD
Sbjct: 239 SFGLEPDDVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKVAGNFD 298

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
           GCLNVYEEMKA+GVKPN++ YN LLD MGRAKRPWQVK  Y+++ DNGLSP++ TYA+LL
Sbjct: 299 GCLNVYEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAALL 358

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            AYGRARYGED   +YREMKEKG+ L+V LYN++LAMCAD+G+ D+A EIFEDMKSS   
Sbjct: 359 HAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSS-GI 417

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PDSWTFSSMITI SC GKVSEAE   NEM EAGF+PN+F+LTSLIQCYGKAQR DDVV 
Sbjct: 418 KPDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFILTSLIQCYGKAQRIDDVVN 477

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIE 527
             NR+ EL ITPDDRFCGCLLNVMTQTP EEL KLV+C E++N KLGYVVKLL+EEQD E
Sbjct: 478 TFNRIFELVITPDDRFCGCLLNVMTQTPNEELSKLVKCAERANPKLGYVVKLLVEEQDSE 537

Query: 528 GDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSP 587
           G+FK EAT+LF+SIS +VKKAYCNCLIDLC+ LN+LE AC+LL+LGLTLE+YT+I SR+ 
Sbjct: 538 GNFKNEATDLFDSISTEVKKAYCNCLIDLCIKLNMLERACELLDLGLTLEIYTNIMSRTS 597

Query: 588 TQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVF 647
           TQWSL+LKSLS GAA+TALHIW+NDLSK LE+GE+ PPLLGINTGHGKHKYS+KGLA+VF
Sbjct: 598 TQWSLNLKSLSPGAAMTALHIWMNDLSKVLEAGEQLPPLLGINTGHGKHKYSEKGLANVF 657

Query: 648 ESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSS 684
           ES+LKELN+PFH++PDKVGWFLTT+ AA+SWLESR S
Sbjct: 658 ESYLKELNSPFHEAPDKVGWFLTTKVAAESWLESRKS 694


>gi|9755842|emb|CAC01928.1| 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana]
          Length = 702

 Score =  969 bits (2504), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/684 (66%), Positives = 554/684 (80%), Gaps = 5/684 (0%)

Query: 10  CSLFST-PKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHG 68
           C+L S  PK   R+F  S+  + S  F+S+  LQ   VS+QE    +      +   P  
Sbjct: 21  CNLLSVYPKSTPRSFLSSYNPNSS-HFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIP 79

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGD 128
           +  +S KSY+WVNPKSPRAS+L+ KSYD+RY+SL+KLA  LD+C   E DV  V+   G 
Sbjct: 80  EPTAS-KSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDACKPNEADVCDVITGFGG 138

Query: 129 DFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLF 188
              EQD V+ LNNMTNP+TA L L      +K S+EVILYNVTMKVFRK +DL+K+E+LF
Sbjct: 139 KLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLF 198

Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
           D+ML+RG+KPDN TF+T+ISCAR N +P +AVEWFE+M SFGC+PD +T ++MIDAYGRA
Sbjct: 199 DEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRA 258

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           GNV+MA  LYDRAR EKWRID   FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++ Y
Sbjct: 259 GNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIY 318

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N L+D+MGRAKRPWQ K IYK++  NG +PNW+TYA+L+RAYGRARYG+D L++YREMKE
Sbjct: 319 NRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKE 378

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
           KG+ L+V LYNTLL+MCAD+GY DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+VS
Sbjct: 379 KGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVS 438

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           EAEA   +M EAGFEP LFVLTS+IQCYGKA++ DDVVR  +++ ELGITPDDRFCGCLL
Sbjct: 439 EAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLL 498

Query: 489 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDVKK 547
           NVMTQTP EE+GKL+ CVEK+  KLG VVK+L+EEQ+  EG FKKEA+EL +SI  DVKK
Sbjct: 499 NVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKK 558

Query: 548 AYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALH 607
           AY NCLIDLCVNLN LE AC++L+LGL  ++YT +QS+S TQWSLHLKSLSLGAALTALH
Sbjct: 559 AYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALH 618

Query: 608 IWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 666
           +W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVG
Sbjct: 619 VWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVG 678

Query: 667 WFLTTEAAAKSWLESRSSLVSVPA 690
           WFLTT  AAK+WLE R S   V A
Sbjct: 679 WFLTTSVAAKAWLEFRRSAGGVSA 702


>gi|240255936|ref|NP_193372.6| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|374095491|sp|Q8GWE0.3|PP314_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16390, chloroplastic; AltName: Full=Chloroplastic
           RNA-binding protein P67; Flags: Precursor
 gi|332658341|gb|AEE83741.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 702

 Score =  966 bits (2497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/684 (66%), Positives = 553/684 (80%), Gaps = 5/684 (0%)

Query: 10  CSLFST-PKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHG 68
           C+L S  PK   R+F  S+  + S  F+S+  LQ   VS+QE    +      +   P  
Sbjct: 21  CNLLSVYPKSTPRSFLSSYNPNSS-HFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIP 79

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGD 128
           +  +S KSY+WVNPKSPRAS+L+ KSYD+RY+SL+KLA  LD+C   E DV  V+   G 
Sbjct: 80  EPTAS-KSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDACKPNEADVCDVITGFGG 138

Query: 129 DFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLF 188
              EQD V+ LNNMTNP+TA L L      +K S+EVILYNVTMKVFRK +DL+K+E+LF
Sbjct: 139 KLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLF 198

Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
           D+ML+RG+KPDN TF+T+ISCAR N +P +AVEWFE+M SFGC+PD +T ++MIDAYGRA
Sbjct: 199 DEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRA 258

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           GNV+MA  LYDRAR EKWRID   FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++ Y
Sbjct: 259 GNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIY 318

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N L+D+MGRAKRPWQ K IYK++  NG +PNW+TYA+L+RAYGRARYG+D L++YREMKE
Sbjct: 319 NRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKE 378

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
           KG+ L+V LYNTLL+MCAD  Y DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+VS
Sbjct: 379 KGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVS 438

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           EAEA   +M EAGFEP LFVLTS+IQCYGKA++ DDVVR  +++ ELGITPDDRFCGCLL
Sbjct: 439 EAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLL 498

Query: 489 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDVKK 547
           NVMTQTP EE+GKL+ CVEK+  KLG VVK+L+EEQ+  EG FKKEA+EL +SI  DVKK
Sbjct: 499 NVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKK 558

Query: 548 AYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALH 607
           AY NCLIDLCVNLN LE AC++L+LGL  ++YT +QS+S TQWSLHLKSLSLGAALTALH
Sbjct: 559 AYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALH 618

Query: 608 IWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 666
           +W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVG
Sbjct: 619 VWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVG 678

Query: 667 WFLTTEAAAKSWLESRSSLVSVPA 690
           WFLTT  AAK+WLESR S   V A
Sbjct: 679 WFLTTSVAAKAWLESRRSAGGVSA 702


>gi|9755886|emb|CAC01940.1| 67kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus]
          Length = 700

 Score =  966 bits (2496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/687 (67%), Positives = 546/687 (79%), Gaps = 6/687 (0%)

Query: 7   YSTCSLFSTP-KLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQY 65
           Y  C+L S   K   R+F  S+   +S  F+S+T LQ   VSLQE          + P+ 
Sbjct: 17  YPLCNLLSVHHKSTPRSFVSSYN-PNSPPFHSRTLLQTSHVSLQEPLPQE--TQIEKPEL 73

Query: 66  PHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRC 125
                 S  K Y WVNPKSPRAS+L+ KSYD+RY+SLVKLA  LDSC A E DV  V+  
Sbjct: 74  EANPPASGSKRYAWVNPKSPRASQLRRKSYDSRYSSLVKLAESLDSCPANEADVSDVIAK 133

Query: 126 LGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAE 185
            G    EQD V+ LNNMTNP+TA L L      LK ++EVILYNVTMKVFRK +DL+K+E
Sbjct: 134 FGSKLFEQDAVVTLNNMTNPETAPLVLNNLLETLKPTREVILYNVTMKVFRKSKDLEKSE 193

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
           +LFD+ML RGVKPDN TF+TLISCAR   LP +AVEWFE+MPSFG +PD +T ++MIDAY
Sbjct: 194 KLFDEMLQRGVKPDNATFTTLISCARQCGLPKRAVEWFEKMPSFGLEPDNVTLAAMIDAY 253

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
           GRAGNVEMA  LYDRAR EKWRIDP  FSTLI++YG AGN+DGCLN+YEEMK++GVKPN+
Sbjct: 254 GRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEMKSLGVKPNL 313

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           + YN LLD+MG+AKRPWQ   I+K++  NG  PNW+TYA+L+RAYGRARYGED L +YR+
Sbjct: 314 VIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQ 373

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           MK KG++L+V LYNTLL+MCAD+GY DEAFEIF+DMKSS  C+PDSWTFSS+IT+ SC G
Sbjct: 374 MKGKGLELTVILYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCG 433

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 485
           +VSEAEA   EM EAGFEP LFVLTSLIQCYGKA++ DDVVR   ++ ELGI PDDRFCG
Sbjct: 434 RVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTFEQVLELGIEPDDRFCG 493

Query: 486 CLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKD 544
           CLLNVMTQTP EE+GKL+ECVEK+  KLG VVK+L+EE++  EG  KKEA+EL +SI  D
Sbjct: 494 CLLNVMTQTPTEEIGKLIECVEKAKPKLGRVVKMLVEEENCEEGVLKKEASELIDSIGSD 553

Query: 545 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 604
           V KAY NCLIDLCVNLN LE AC++L+LGL  ++Y+ +QS+S TQWSLHLKSLSLGAALT
Sbjct: 554 VNKAYLNCLIDLCVNLNKLEKACEILQLGLEYDIYSGLQSKSATQWSLHLKSLSLGAALT 613

Query: 605 ALHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPD 663
           ALH+W+NDLS+ AL SGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PD
Sbjct: 614 ALHVWMNDLSEAALTSGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPD 673

Query: 664 KVGWFLTTEAAAKSWLESRSSLVSVPA 690
           KVGWFLTT  AAK+WLESR S   V A
Sbjct: 674 KVGWFLTTSVAAKTWLESRRSSAEVSA 700


>gi|9755888|emb|CAC01941.1| RSP67.2 [Raphanus sativus]
          Length = 700

 Score =  966 bits (2496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/703 (66%), Positives = 550/703 (78%), Gaps = 16/703 (2%)

Query: 1   MASNLCYSTCSLFSTP-----------KLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQ 49
           M+ +LC S  SL   P           K   R+F  S+   +S  F+S+T LQ R VSLQ
Sbjct: 1   MSFHLCSSPSSLLHDPYPLCNLLSVHHKSTPRSFVSSYN-PNSPPFHSRTLLQTRHVSLQ 59

Query: 50  ETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADL 109
           E          + P+       S  K Y WVNPKSPRAS+L+ KSYD+RY+SLVKLA  L
Sbjct: 60  EPLPQE--TQIEKPELDANPPASGSKRYAWVNPKSPRASQLRRKSYDSRYSSLVKLAESL 117

Query: 110 DSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYN 169
           DSC   E DV  V+   G    EQD V+ LNNMTNP+TA L L      LK ++EVILYN
Sbjct: 118 DSCPPNEADVSDVIAKFGSKLFEQDAVVALNNMTNPETAPLVLNNLLETLKPTREVILYN 177

Query: 170 VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
           VTMKVFRK +DL+K+E+LFD+ML RGVKPDN TF+TLISCAR   LPN+AVEWFE+MPSF
Sbjct: 178 VTMKVFRKSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQCGLPNRAVEWFEKMPSF 237

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
           G +PD +T ++MIDAYGRAGNVEMA  LYDRAR EKWRIDP  FSTLI++YG AGN+DGC
Sbjct: 238 GLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGC 297

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           LN+YEEMK++GVKPN++ YN LLD+MG+AKRPWQ   I+K++  NG  PNW+TYA+L+RA
Sbjct: 298 LNIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRA 357

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
           YGRARYGED L +YR+MK KGM+L+V LYNTLL+MCAD+GY DEAFEIF+DMKSS  C+P
Sbjct: 358 YGRARYGEDALVIYRQMKGKGMELTVLLYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEP 417

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           DSWTFSS+IT+ SC G+VSEAEA   EM EAGFEP LFVLTSLIQCYGKA++ DDVVR  
Sbjct: 418 DSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTF 477

Query: 470 NRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EG 528
            ++ ELGI PDDRFCGCLLNVMTQTPKEE+GKL+ CVEK+  KLG V K+L+EE++  EG
Sbjct: 478 EQVLELGIEPDDRFCGCLLNVMTQTPKEEIGKLIGCVEKAKPKLGRVEKMLVEEENCEEG 537

Query: 529 DFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPT 588
             KKEA+EL +SI  DV KAY NCLIDLCVNLN LE AC++L+LGL  ++Y+ +QS+S T
Sbjct: 538 VLKKEASELIDSIGSDVNKAYLNCLIDLCVNLNKLEKACEILQLGLEYDIYSGLQSKSDT 597

Query: 589 QWSLHLKSLSLGAALTALHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVF 647
           QWSLHLKSLSLGAALTALH+W+NDLS+ AL SGEEFPPLLGINTGHGKHKYSDKGLA+VF
Sbjct: 598 QWSLHLKSLSLGAALTALHVWMNDLSEAALTSGEEFPPLLGINTGHGKHKYSDKGLAAVF 657

Query: 648 ESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSLVSVPA 690
           ESHLKELNAPFH++PDKVGWFLTT  AAK+WLESR S   V A
Sbjct: 658 ESHLKELNAPFHEAPDKVGWFLTTSVAAKTWLESRRSSAEVSA 700


>gi|224137224|ref|XP_002322504.1| predicted protein [Populus trichocarpa]
 gi|222867134|gb|EEF04265.1| predicted protein [Populus trichocarpa]
          Length = 647

 Score =  964 bits (2491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/650 (69%), Positives = 545/650 (83%), Gaps = 3/650 (0%)

Query: 41  LQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYN 100
           LQ  +VSLQ+ +   P + +      + K GSS KSYIWVNPKS +AS L++ SYD RY 
Sbjct: 1   LQITNVSLQDQKI--PQQETSKDSNFNEKNGSSSKSYIWVNPKSSKASTLRKSSYDARYA 58

Query: 101 SLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLK 160
           SL+K A  L+SC+  +DDVF++L   G+   E D V+ILNNM+NPDTA LAL +F  +L+
Sbjct: 59  SLIKAAKSLNSCNPNKDDVFNILGEFGNKLFEHDAVVILNNMSNPDTALLALKFFRERLE 118

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
            ++EV++YNVTMKV RKCRDL+K E+LFD+M++R VKPDNVTFST+ISCAR+ NL +KAV
Sbjct: 119 FNREVVVYNVTMKVLRKCRDLNKVEKLFDEMIERAVKPDNVTFSTIISCARLCNLADKAV 178

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           EWFE+MPSFG DPD +T+S+MID+YGR GNVE A  LYDRAR EKWR+D   FSTLI++Y
Sbjct: 179 EWFEKMPSFGLDPDDVTFSTMIDSYGRVGNVEKALSLYDRARTEKWRLDTTTFSTLIRIY 238

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
             +GNFD CLNVYEEMKA+GVKPN++ YN LLD MGRA+RPWQ K  Y+++ D+GLSP++
Sbjct: 239 KDSGNFDCCLNVYEEMKALGVKPNLVIYNTLLDAMGRARRPWQAKKFYQDIIDSGLSPSY 298

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TYA+LLRAYGRARYGEDT+ +Y+EMKEK + L+V LYNT+LAMCAD+G+ DEA EIFED
Sbjct: 299 ATYAALLRAYGRARYGEDTIKIYKEMKEKELSLNVLLYNTILAMCADLGFVDEAIEIFED 358

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           MK+S    PDSWTFSSMIT+ SC GKVSEAE M NEM EAGF+PN+FVLTSLIQCYGKAQ
Sbjct: 359 MKNS-GISPDSWTFSSMITMSSCCGKVSEAENMLNEMFEAGFQPNIFVLTSLIQCYGKAQ 417

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLL 520
           R DDVV+  NRL EL ITPDDRFCGCLLNVMTQTP EELGKLV+CVE++N KLG+VVKLL
Sbjct: 418 RIDDVVKTFNRLYELLITPDDRFCGCLLNVMTQTPNEELGKLVDCVERANPKLGHVVKLL 477

Query: 521 LEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT 580
           +EEQ  EG+FKKEA +LF++IS +VKKAYCNCLIDLCV LN+LE AC+LL+ GLTL +YT
Sbjct: 478 VEEQGNEGNFKKEAADLFDNISTEVKKAYCNCLIDLCVKLNMLERACELLDHGLTLGIYT 537

Query: 581 DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSD 640
           DIQS++ TQWSL+LKSLS GAALTALH+WINDLSKALE+GE+ PPLLGINTGHGKHKYS+
Sbjct: 538 DIQSKTSTQWSLNLKSLSSGAALTALHVWINDLSKALEAGEQLPPLLGINTGHGKHKYSE 597

Query: 641 KGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSLVSVPA 690
           KGLA+VFESHLKELNAPFH++PDKVGWFLTT+ AA+SWLESR    +V A
Sbjct: 598 KGLANVFESHLKELNAPFHEAPDKVGWFLTTKVAAESWLESRKLADAVAA 647


>gi|2244996|emb|CAB10416.1| salt-inducible protein homolog [Arabidopsis thaliana]
 gi|7268388|emb|CAB78681.1| salt-inducible protein homolog [Arabidopsis thaliana]
          Length = 777

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/658 (67%), Positives = 540/658 (82%), Gaps = 3/658 (0%)

Query: 35  FYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKS 94
           F+S+  LQ   VS+QE    +      +   P  +  +S KSY+WVNPKSPRAS+L+ KS
Sbjct: 121 FHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIPEPTAS-KSYVWVNPKSPRASQLRRKS 179

Query: 95  YDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTY 154
           YD+RY+SL+KLA  LD+C   E DV  V+   G    EQD V+ LNNMTNP+TA L L  
Sbjct: 180 YDSRYSSLIKLAESLDACKPNEADVCDVITGFGGKLFEQDAVVTLNNMTNPETAPLVLNN 239

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
               +K S+EVILYNVTMKVFRK +DL+K+E+LFD+ML+RG+KPDN TF+T+ISCAR N 
Sbjct: 240 LLETMKPSREVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNG 299

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
           +P +AVEWFE+M SFGC+PD +T ++MIDAYGRAGNV+MA  LYDRAR EKWRID   FS
Sbjct: 300 VPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFS 359

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
           TLI++YG +GN+DGCLN+YEEMKA+GVKPN++ YN L+D+MGRAKRPWQ K IYK++  N
Sbjct: 360 TLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITN 419

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G +PNW+TYA+L+RAYGRARYG+D L++YREMKEKG+ L+V LYNTLL+MCAD  + DEA
Sbjct: 420 GFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRHVDEA 479

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           FEIF+DMK+ E C PDSWTFSS+IT+ +C G+VS+AEA   ++ EAGFEP LFVLTS+IQ
Sbjct: 480 FEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSKAEAALLQIREAGFEPTLFVLTSVIQ 539

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG 514
           CYGKA++ DDVVR  +++ ELGITPDDRFCGCLLNVMTQTP EE+GKL+ CVEK+  KLG
Sbjct: 540 CYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKLG 599

Query: 515 YVVKLLLEEQDI-EGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELG 573
            VVK+L+EEQ+  EG FKKEA+EL +SI  DVKKAY NCLIDLCVNLN LE AC++L+LG
Sbjct: 600 QVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAYLNCLIDLCVNLNKLERACEILQLG 659

Query: 574 LTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSK-ALESGEEFPPLLGINTG 632
           L  ++YT +QS+S TQWSLHLKSLSLGAALTALH+W+NDLS+ ALESGEEFPPLLGINTG
Sbjct: 660 LEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHVWMNDLSEAALESGEEFPPLLGINTG 719

Query: 633 HGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSLVSVPA 690
           HGKHKYSDKGLA+VFESHLKELNAPFH++PDKVGWFLTT  AAK+WLESR S   V A
Sbjct: 720 HGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGWFLTTSVAAKAWLESRRSAGGVSA 777


>gi|297804554|ref|XP_002870161.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315997|gb|EFH46420.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 702

 Score =  954 bits (2466), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/684 (66%), Positives = 549/684 (80%), Gaps = 5/684 (0%)

Query: 10  CSLFST-PKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHG 68
           C+L S  PK   R+F  S+  + S  F+S+  LQ   VS+QE    +      +   P  
Sbjct: 21  CNLLSVYPKSTPRSFLCSYNPNSS-PFHSRNLLQVTHVSVQEAIPQSEKSKLDDADLPLP 79

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGD 128
              +S KSY+WVNPKSPRAS+L+ KSYD+RY+SL+KLA  LDSC   E DV  V+   G 
Sbjct: 80  DPPAS-KSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDSCKPNEADVCDVITGFGG 138

Query: 129 DFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLF 188
              EQD V+ LNNMTNP+TA + L      +K S+EVILYNVT+KVFRK ++L+K+E+LF
Sbjct: 139 KLFEQDAVVTLNNMTNPETAPIVLNNLLETMKPSREVILYNVTLKVFRKSKNLEKSEKLF 198

Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
           D+ML+RGVKPDN TF+T+ISCAR + +P +AVEWFE+M SFGC+PD +T ++MIDAYGRA
Sbjct: 199 DEMLERGVKPDNATFTTIISCARQSGVPKRAVEWFEKMSSFGCEPDNVTLAAMIDAYGRA 258

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           GNVEMA  LYDRAR EKWRID   FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++ Y
Sbjct: 259 GNVEMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIY 318

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N LLD+MGRAKRPWQ K I+K++  NG +PNW+TYA+L+RAYGRARYG+D L +YREMKE
Sbjct: 319 NRLLDSMGRAKRPWQAKIIHKDLISNGFTPNWSTYAALIRAYGRARYGDDALVIYREMKE 378

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
           KG+ L+V LYNTLL+MCAD+GY DEAFEIF+DMK+ E C PDSWTFSS+IT+ SC G+VS
Sbjct: 379 KGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYSCSGRVS 438

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           EAEA   +M EAGFEP LFVLTS+IQCYGKA++ DDVVR  +++ ELGITPDDRFCGCLL
Sbjct: 439 EAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLL 498

Query: 489 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQD-IEGDFKKEATELFNSISKDVKK 547
           NVMTQTP EE+GKL+ CVEK+  +    VK+L+EEQ+  EG FKKE +EL +SI  DVKK
Sbjct: 499 NVMTQTPSEEIGKLIGCVEKAKPQNIGQVKMLVEEQNGEEGVFKKETSELIDSIGSDVKK 558

Query: 548 AYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALH 607
           AY NCLIDLCVNLN LE AC++L+LGL  ++YT +QS+S TQWSLHLKSLSLGAALTALH
Sbjct: 559 AYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALH 618

Query: 608 IWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 666
           +WINDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVG
Sbjct: 619 VWINDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVG 678

Query: 667 WFLTTEAAAKSWLESRSSLVSVPA 690
           WFLTT  AAK+WLESR S   V A
Sbjct: 679 WFLTTSVAAKAWLESRRSSGGVSA 702


>gi|356522073|ref|XP_003529674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 685

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/688 (66%), Positives = 546/688 (79%), Gaps = 14/688 (2%)

Query: 1   MASNLCYSTCSLFS-----TPKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSN 55
           MA NLC S  SLF      +     R F        SL+ +SKT L    VSL E +   
Sbjct: 1   MAYNLCSSPSSLFHDLPSISSSSSSRKFKLRNLSSSSLTPHSKTLLH---VSLHEHE--- 54

Query: 56  PTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSAT 115
           P      P      + SS  +YIWVNP+SPRA +L+ +SYD RY SLV LA  LDSC+ +
Sbjct: 55  PIPEHLPPD--AKSSSSSKSNYIWVNPRSPRAKQLESRSYDARYTSLVNLAHSLDSCNPS 112

Query: 116 EDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVF 175
           ++DV  VL+ LGD  +EQD VI++NNM+N       L YF  +++ ++EVILYNVT+KVF
Sbjct: 113 QEDVSLVLKDLGDRVIEQDAVIVINNMSNSRVVPFVLNYFQRRIRPTREVILYNVTLKVF 172

Query: 176 RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           RK +DLD  E+LFD+ML RGV+PDNVTFST+ISCAR+ +LPNKAVEWFE+M SFGC+PD 
Sbjct: 173 RKSKDLDAMEKLFDEMLQRGVRPDNVTFSTIISCARICSLPNKAVEWFEKMSSFGCEPDD 232

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           +TYS+MIDAYGRAGN++MA  LYDRAR EKWR+D   FSTLIK+YG AGN+DGCLNVY+E
Sbjct: 233 VTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDTVTFSTLIKMYGLAGNYDGCLNVYQE 292

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           MK +GVKPNM+ YN LLD MGRAKRPWQ K+IY EMT+NG SPNW TYASLLRAYGR RY
Sbjct: 293 MKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVTYASLLRAYGRGRY 352

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            ED L VY+EMKEKGM+++  LYNTLLAMCAD+G  +EAFEIFEDMK+S  C  DSWTFS
Sbjct: 353 SEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLANEAFEIFEDMKTSATCLCDSWTFS 412

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           S+ITI SC G VSEAE M NEM+E+G +P +FVLTSL+QCYGK  RTDDVV+  N+L +L
Sbjct: 413 SLITIYSCTGNVSEAERMLNEMIESGSQPTIFVLTSLVQCYGKVGRTDDVVKTFNQLLDL 472

Query: 476 GITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVK-LLLEEQDIEGDFKKEA 534
           GI+PDDRFCGCLLNVMTQTPKEELGKL +CV+K+N KLG VV+ L+   ++  G+FKKEA
Sbjct: 473 GISPDDRFCGCLLNVMTQTPKEELGKLNDCVKKANPKLGSVVRYLVEGLEEGGGEFKKEA 532

Query: 535 TELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHL 594
           +ELFNSI+ +VKK +CN LIDLCVNLNLL+ AC+LL+LGLTLE+YTD+QS+S TQWSLHL
Sbjct: 533 SELFNSIADEVKKPFCNSLIDLCVNLNLLDKACELLDLGLTLEIYTDVQSKSQTQWSLHL 592

Query: 595 KSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKEL 654
           KSLSLGA+LTALH WINDLSK LESGE+ PPLLGINTGHGKH+YSDKGLASV ESHL EL
Sbjct: 593 KSLSLGASLTALHAWINDLSKTLESGEDLPPLLGINTGHGKHRYSDKGLASVVESHLNEL 652

Query: 655 NAPFHDSPDKVGWFLTTEAAAKSWLESR 682
           NAPFH++PDK GWFLTT+ AAKSWLESR
Sbjct: 653 NAPFHEAPDKAGWFLTTQVAAKSWLESR 680


>gi|357480587|ref|XP_003610579.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511634|gb|AES92776.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 706

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/645 (68%), Positives = 530/645 (82%), Gaps = 2/645 (0%)

Query: 40  SLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRY 99
           SLQ+ S+  Q+ Q +N  K ++    P G + SS  SYIWVNPKSPRA +L +KSYD RY
Sbjct: 58  SLQE-SIPQQQPQDANSQKDAKFDN-PIGNSTSSKSSYIWVNPKSPRAKQLGKKSYDARY 115

Query: 100 NSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKL 159
           +SLVKL+  LDSC  TE DV  +L+CLGD  +EQD VII+NNM N       L Y   K 
Sbjct: 116 SSLVKLSNALDSCEPTEHDVSQILKCLGDKVIEQDAVIIINNMENSVVVPFVLQYVQRKS 175

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
             ++EVILYNVT+KVFRKC+DLD AE++F +ML RGVKPDNVTFST+ISCAR   LP+KA
Sbjct: 176 IPTREVILYNVTLKVFRKCKDLDGAEKVFGEMLQRGVKPDNVTFSTIISCARSCYLPDKA 235

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           VEWFE+MP FGC+PD +TYS MID+YG+AG+++MA  LYDRAR EKWRI+P  FSTLIK+
Sbjct: 236 VEWFEKMPLFGCEPDDVTYSVMIDSYGKAGDIDMALNLYDRARTEKWRIEPATFSTLIKM 295

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           YG AGN+DGCLNVYEEMKA+GVKPN++ YN LLD MGRAKRPWQ +TIYKEM +N + PN
Sbjct: 296 YGVAGNYDGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQARTIYKEMINNDILPN 355

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TYASLL AYGRAR+ ED L VYREM+EK M L+  LYN+LLAMCADVGYTD AFEIFE
Sbjct: 356 RATYASLLHAYGRARFCEDALVVYREMREKEMDLNTHLYNSLLAMCADVGYTDLAFEIFE 415

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           DMKSS+ C PDSWTFSS+ITI SC G+VSEAE M NEM+E+GFEP +FVLTSL+QCYGKA
Sbjct: 416 DMKSSDTCSPDSWTFSSLITIYSCSGRVSEAERMMNEMIESGFEPTIFVLTSLVQCYGKA 475

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKL 519
           +RTDDVV+  N+L ++GI PDDRFCGCLLNVMTQTPKEELGKL++CVEK+N KL +VV+ 
Sbjct: 476 KRTDDVVKTFNQLLDMGIEPDDRFCGCLLNVMTQTPKEELGKLIDCVEKANPKLSFVVRY 535

Query: 520 LLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVY 579
           L+E  + +G+F+KEA ELF+SI+  VK+A+CN LIDLC+NL+LL+ A  LL+LGLTLE+Y
Sbjct: 536 LVEGLEGDGEFRKEALELFSSITDGVKRAFCNSLIDLCINLDLLDRARVLLDLGLTLEIY 595

Query: 580 TDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYS 639
           TDIQSRS TQWSL L+ LS+GA+LTA H+WINDLSKA ESGE+ PPLLGI+TGHGKH+YS
Sbjct: 596 TDIQSRSQTQWSLILRGLSVGASLTAFHVWINDLSKAFESGEDLPPLLGIHTGHGKHRYS 655

Query: 640 DKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSS 684
           DKGLA V ESH+KEL+APF +SPDK GWFLTT+ A KSW+ESR S
Sbjct: 656 DKGLAGVIESHMKELDAPFRESPDKAGWFLTTQVAVKSWMESRGS 700


>gi|356562139|ref|XP_003549331.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 689

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/694 (65%), Positives = 548/694 (78%), Gaps = 22/694 (3%)

Query: 1   MASNLCYSTCSLFS-----------TPKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQ 49
           MA NLC S  SLF              K   R  +  FQ   S + +SKT L    VSL 
Sbjct: 1   MAYNLCSSPSSLFHDLPSISSSSSSCRKFKLRNSSSFFQPSPSPTPHSKTLLH---VSLH 57

Query: 50  ETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADL 109
           E    +   H+         + SS  +YIWVNP+SPRA +L+ +SYD RY SLV LA  L
Sbjct: 58  EPIPEHLPPHAN-------SSSSSKSNYIWVNPRSPRAKQLERRSYDARYTSLVNLALSL 110

Query: 110 DSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYN 169
           DSC+ +++DV  VL+ L    +EQD VI++NNM+NP      L YF  +++ ++EVILYN
Sbjct: 111 DSCNPSQEDVSLVLKDLWGRVIEQDAVIVINNMSNPRVVPFVLNYFQRRIRPTREVILYN 170

Query: 170 VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
           VT+KVFRK +DLD  E+LFD+ML RGV+PDNV+FST+ISCAR+ +LPNKAVEWFE+MPSF
Sbjct: 171 VTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVSFSTIISCARICSLPNKAVEWFEKMPSF 230

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
            C+PD +TYS+MIDAYGRAGN++MA  LYDRAR EKWR+D   FSTLIK+YG AGN+DGC
Sbjct: 231 RCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDSVTFSTLIKMYGLAGNYDGC 290

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           LNVY+EMKA+GVK NM+ YN LLD MGRAKRPWQ K+IY EMT+NG  PNW TYASLLRA
Sbjct: 291 LNVYQEMKALGVKSNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFLPNWATYASLLRA 350

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
           YGR RY ED L VY+EMKEKGM+++  LYNTLLAMCAD+G  D+AF+IFEDMKSS  C  
Sbjct: 351 YGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLADDAFKIFEDMKSSATCLC 410

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           DSWTFSS+ITI SC G VSEAE M NEM+E+GF+P +FVLTSL+QCYGK  RTDDV++  
Sbjct: 411 DSWTFSSLITIYSCSGNVSEAERMLNEMIESGFQPTIFVLTSLVQCYGKVGRTDDVLKTF 470

Query: 470 NRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEE-QDIEG 528
           N+L +LGI+PDDRFCGCLLNVMTQTPKEELGKL +CVEK+N KLG V++ L+E  ++ +G
Sbjct: 471 NQLLDLGISPDDRFCGCLLNVMTQTPKEELGKLNDCVEKANPKLGSVLRYLVEGLEEGDG 530

Query: 529 DFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPT 588
           +F+KEA+ELFNSI+ +VKK +CN LIDLCVNLNLL+ AC+LL+LGLTLE+YTDIQS+S T
Sbjct: 531 EFRKEASELFNSIADEVKKPFCNSLIDLCVNLNLLDKACELLDLGLTLEIYTDIQSKSQT 590

Query: 589 QWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFE 648
           QWSLHLKSLSLGA+LTALH WINDLSK LESGE+ PPLLGINTGHGKH+YSDKGLA+V E
Sbjct: 591 QWSLHLKSLSLGASLTALHAWINDLSKTLESGEDLPPLLGINTGHGKHRYSDKGLANVVE 650

Query: 649 SHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESR 682
           SHL ELNAPFH++PDK GWFLTT+ AAKSWLESR
Sbjct: 651 SHLNELNAPFHEAPDKAGWFLTTQVAAKSWLESR 684


>gi|297736717|emb|CBI25753.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  898 bits (2320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/706 (64%), Positives = 531/706 (75%), Gaps = 66/706 (9%)

Query: 1   MASNLCYSTCSL------------FSTPKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSL 48
           MA +LC S  SL            FS     R   +FSF + +SLS +S+T LQ   VSL
Sbjct: 1   MAYHLCSSPSSLCHDHHYLHNSLSFSRKSRLRSFNSFSF-KPNSLSLHSRTFLQITHVSL 59

Query: 49  -----QETQ---SSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYN 100
                QETQ   +SNP     N Q P  KT    KSYIWVNP+SPRASKL++ SYD RY 
Sbjct: 60  EDPIPQETQKADASNPP----NSQDPDRKT----KSYIWVNPRSPRASKLRQHSYDARYA 111

Query: 101 SLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLK 160
           SLVK+A  LDSC ATE+DV  VLRCLGD  LEQD VI+LNNMTNP+TA LA  +F  +LK
Sbjct: 112 SLVKIAESLDSCEATEEDVSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLK 171

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
            S+EVILYNVT+KVFRKCR+LD+AE+LFD+ML+RGVKPDN+TFST+ISCAR+++LPNKAV
Sbjct: 172 PSREVILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAV 231

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           EWFE+MP FGC PD +TYS+MIDAYGRAGNV+MA  LYDRAR EKWRIDP  FSTLI++Y
Sbjct: 232 EWFEKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIY 291

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           G +GNFDGCLNV                                   Y+EM   G+ PN 
Sbjct: 292 GMSGNFDGCLNV-----------------------------------YEEMKALGVKPNL 316

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
             Y +LL A GRA+      ++Y+EM   G+Q S   Y  LL       Y ++A  ++++
Sbjct: 317 VIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKE 376

Query: 401 MK--SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           MK   S NC PDSWTFSS+ITI SC GKVSEAEAM N MLEAGFEPN+FVLTSLIQCYGK
Sbjct: 377 MKEKGSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGK 436

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVK 518
           A RTD+VVR  +RL EL ITPDDRFCGC+LNVMTQ+PKEELGKL++C++K+N KLG VVK
Sbjct: 437 ANRTDEVVRTFDRLLELDITPDDRFCGCMLNVMTQSPKEELGKLIDCIDKANPKLGNVVK 496

Query: 519 LLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEV 578
           LLLEEQ+ EG F+KEA+ELF+SIS DVKKAYCNCLIDLCVNLNLLE AC+L +LGLTLE+
Sbjct: 497 LLLEEQNGEGTFRKEASELFDSISADVKKAYCNCLIDLCVNLNLLEKACELFDLGLTLEI 556

Query: 579 YTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY 638
           Y DIQS+SPTQWSLHLKSLSLGAALTALHIW+NDLSKA+E GEE P +LGINTGHGKHKY
Sbjct: 557 YIDIQSKSPTQWSLHLKSLSLGAALTALHIWMNDLSKAVEVGEELPAVLGINTGHGKHKY 616

Query: 639 SDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSS 684
           SDKGLASVFESHLKELNAPFH++PDKVGWFLTT+ AA SWLESRS+
Sbjct: 617 SDKGLASVFESHLKELNAPFHEAPDKVGWFLTTKVAATSWLESRSA 662


>gi|356557985|ref|XP_003547290.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 692

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/653 (61%), Positives = 489/653 (74%), Gaps = 6/653 (0%)

Query: 36  YSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSY 95
           +SKT L     SLQ   +    K       P  K+ S  K+ IWVNP+SPRA  L++ S 
Sbjct: 31  HSKTLLHAPRFSLQPVNTLQDAKLDD----PDAKSPSLSKNSIWVNPRSPRAKHLQKNSP 86

Query: 96  DTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYF 155
             R +SL KLA  LDSC+ TE  V  +L  L D+  E+D V ILN M NP+TA LAL YF
Sbjct: 87  HARSSSLTKLAKSLDSCNPTEQHVSEILNVLRDNVSERDAVFILNTMVNPNTALLALKYF 146

Query: 156 TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
             K+  +K V+LYNVT+KV R+ RD + AE+LFD+ML RGVKPDN+TFSTL++CA ++ L
Sbjct: 147 QPKINPAKHVVLYNVTLKVLRESRDFEGAEKLFDEMLQRGVKPDNITFSTLVNCASVSGL 206

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
           PNKAVE FE+M  FGC+PD +T S M+ AY R  NV+ A  LYDRA+ E W +D   FST
Sbjct: 207 PNKAVELFEKMSGFGCEPDGITCSGMVYAYARTNNVDKAVNLYDRAKAENWSLDAVTFST 266

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LIK+Y  AGN+D CL VY+EMK +GVKPN+ TYN LL  M R+K+  Q K I+KEM  NG
Sbjct: 267 LIKMYSMAGNYDKCLEVYQEMKVLGVKPNVATYNTLLGAMLRSKKHRQAKAIHKEMKSNG 326

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           +SP++ TYASLL  Y RA+  ED L VY+EMK  GM ++  LYN LLAMCADVGYTD A 
Sbjct: 327 VSPDFITYASLLEVYTRAQCSEDALGVYKEMKGNGMDMTADLYNKLLAMCADVGYTDRAV 386

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           EIF +MKSS  CQPDSWTFSS+ITI S  GKVSE E M NEM+++GF+P +FV+TSLI+C
Sbjct: 387 EIFYEMKSSGTCQPDSWTFSSLITIYSRSGKVSEVEGMLNEMIQSGFQPTIFVMTSLIRC 446

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGY 515
           YGKA+RTDDVV+   +L +LGI P+D FC CLLNV+TQTPKEELGKL +C+EK+N+KLG 
Sbjct: 447 YGKAKRTDDVVKIFKQLLDLGIVPNDHFCCCLLNVLTQTPKEELGKLTDCIEKANTKLGT 506

Query: 516 VVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLT 575
           VV+ L+EEQ+ +  F+KE  EL NSI  +VKK  CNCLIDLCV LN+ E AC LL+LGL 
Sbjct: 507 VVRYLVEEQESDEGFRKETLELLNSIDAEVKKPLCNCLIDLCVKLNVPERACGLLDLGLM 566

Query: 576 LEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGK 635
           LE+Y +IQS+S TQWSLHLK LS+GAA+TALH+WINDLS+ALESGE+ PPLLGINTG GK
Sbjct: 567 LEIYKNIQSKSQTQWSLHLKELSVGAAMTALHVWINDLSEALESGEDLPPLLGINTGQGK 626

Query: 636 HKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSLVSV 688
           HKYSDKGLASVFES LKELNAPFH++  K GWFL T+AAAK WLESR S  S+
Sbjct: 627 HKYSDKGLASVFESRLKELNAPFHEA--KAGWFLVTKAAAKLWLESRDSTESI 677


>gi|356532365|ref|XP_003534744.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 705

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/625 (62%), Positives = 486/625 (77%), Gaps = 2/625 (0%)

Query: 66  PHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRC 125
           P   + S  K+ IWVNP SPRA  L+ KS   RY+ L +L   L+SC+ +   V ++L+ 
Sbjct: 63  PDANSLSLSKTRIWVNPNSPRAKHLQPKSPSARYSYLARLTESLNSCTPSAQHVSTILKG 122

Query: 126 LGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDK 183
           L D+  E+D V IL+ MTNP+TA   L +F +K+K S  KEVILYN T+K FRK RD + 
Sbjct: 123 LRDNVSERDAVFILDKMTNPETAPFVLGHFRDKIKPSTDKEVILYNATLKAFRKSRDFEG 182

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
           AE+LFD+ML RGVKPDN+TFSTLI+ ARM  LP+KAVEWF++MPSFGC+PDA+T S+M+ 
Sbjct: 183 AEKLFDEMLQRGVKPDNITFSTLINSARMCALPDKAVEWFKKMPSFGCEPDAMTCSAMVS 242

Query: 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
           AY +  NV+MA  LY RA+ EKW +D + FSTLIK+YG  GN+  CL ++ EMK +GVKP
Sbjct: 243 AYAQTNNVDMALSLYGRAKAEKWSLDASTFSTLIKMYGVLGNYVECLRIFGEMKVLGVKP 302

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
            ++TYN LL ++ R+K+ WQ K +YKEM  NG+SP++ TYA+LLR Y  A+Y ED LSVY
Sbjct: 303 TVVTYNTLLGSLFRSKKSWQAKNVYKEMISNGVSPDFITYATLLRIYAGAQYREDALSVY 362

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
           +EMK  GM ++V LYN LL MCADVG  +EA EIFEDMKSS  CQPDS TFSS+IT+ SC
Sbjct: 363 KEMKGNGMDMTVDLYNRLLDMCADVGCIEEAVEIFEDMKSSGTCQPDSLTFSSLITVYSC 422

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
            GKVSEAE M NEM+++GF+P ++VLTSL+QCYG+A++TDDVV+   +L +LGI PD  F
Sbjct: 423 NGKVSEAEGMLNEMIQSGFQPTIYVLTSLVQCYGRAKQTDDVVKIFKQLLDLGIVPDVYF 482

Query: 484 CGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543
           C CLLNVMTQTPKEE GKL +C+EK+N++LG VV+ L+E Q+ +GDF+KEA+EL NSI  
Sbjct: 483 CCCLLNVMTQTPKEEFGKLTDCIEKANTRLGSVVRYLVEGQEGDGDFRKEASELLNSIDF 542

Query: 544 DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAAL 603
            VKK  CNCLIDLCV+LN    A  +L+LGL LE+Y +IQSRS TQWSLHLK LS+GAA+
Sbjct: 543 KVKKPLCNCLIDLCVSLNAPNRARDVLDLGLMLEIYKNIQSRSETQWSLHLKKLSVGAAI 602

Query: 604 TALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPD 663
           TALH+WINDLSKALES E+ PPLLG+NTG GKHKYSDKGLASVFESHL+ELNAPFH +PD
Sbjct: 603 TALHVWINDLSKALESWEDLPPLLGVNTGQGKHKYSDKGLASVFESHLRELNAPFHQAPD 662

Query: 664 KVGWFLTTEAAAKSWLESRSSLVSV 688
           K GWFL T+ AAKSWLESR S  ++
Sbjct: 663 KAGWFLVTKEAAKSWLESRGSAETI 687


>gi|356532363|ref|XP_003534743.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 693

 Score =  824 bits (2128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/655 (61%), Positives = 493/655 (75%), Gaps = 9/655 (1%)

Query: 36  YSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSY 95
           +SKT L     S Q     N  + +     P  K+ S  K   WVNP+SPRA +L++ S 
Sbjct: 31  HSKTLLHAPRFSFQPF---NTLQDAAKLDDPDAKSPSLSKKSFWVNPRSPRAKQLQQNSP 87

Query: 96  DTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYF 155
             R +SL KLA  LDSC+ TE+ V  +L  LG++  E+D V ILN M NP+TA LAL YF
Sbjct: 88  HARSSSLTKLAKSLDSCNPTEEHVSEILNVLGNNVAERDAVFILNTMANPNTALLALKYF 147

Query: 156 TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
             K+   K V+LYNVT+KV R+ +D + +E+LFD+ML RGV+P+ +TFST+IS A + +L
Sbjct: 148 QQKISPGKHVVLYNVTLKVLREVKDFEGSEKLFDEMLQRGVEPNLITFSTIISSASVCSL 207

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
           P+KA+EWFE+MPSFG +PDA   S MI AY  +GN +MA  LY RA+ EKWR+D  AFS 
Sbjct: 208 PDKAMEWFEKMPSFGVEPDASVASFMIHAYAHSGNADMALKLYGRAKAEKWRVDTAAFSA 267

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LIK+ G   NFDGCL+VY +MK +G KPNM+TYN LL  MGRAKR    K IY+EM  NG
Sbjct: 268 LIKMCGMLENFDGCLSVYNDMKVLGAKPNMVTYNALLYAMGRAKRALDAKAIYEEMISNG 327

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
            SPNW T+A+LL+AY +AR+ ED L VY+EMK  GM ++  LYN LLAMCADVGYTD A 
Sbjct: 328 FSPNWPTHAALLQAYCKARFPEDALGVYKEMKGNGMDITADLYNKLLAMCADVGYTDRAS 387

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           EIF +MKSS  CQPDSWTFSSMIT+ S  GKVSEAE M NEM+++GF+P +FV+TSLI C
Sbjct: 388 EIFYEMKSSGTCQPDSWTFSSMITMYSRSGKVSEAEGMLNEMIQSGFQPTIFVMTSLICC 447

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGY 515
           YGKA+RTDDVV+   +L +LGI P+D FC  LLNV+TQTPKEELGKL +C+EK+N+KLG 
Sbjct: 448 YGKAKRTDDVVKIFKQLLDLGIVPNDHFCCSLLNVLTQTPKEELGKLTDCIEKANTKLGT 507

Query: 516 VVKLLLEEQDIEGD--FKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELG 573
           VV+ L+EE  +EGD  F+KEA EL NSI  +VKK  CNCLIDLCV LN+ E A  LL+LG
Sbjct: 508 VVRYLMEE--LEGDEAFRKEALELLNSIDAEVKKPLCNCLIDLCVKLNVPERARDLLDLG 565

Query: 574 LTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGH 633
           L LE+YT+IQ +S TQWSLHLK LS+GAA+TALH+WIN+LSKALESGE+ PPLLGINTG 
Sbjct: 566 LMLEIYTNIQFKSQTQWSLHLKELSVGAAMTALHVWINELSKALESGEDLPPLLGINTGQ 625

Query: 634 GKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSLVSV 688
           GKHKYSDKGLASVFESHLKELNAPFH+S  K GWFL T+AAAKSWLESR S  S+
Sbjct: 626 GKHKYSDKGLASVFESHLKELNAPFHES--KAGWFLVTKAAAKSWLESRDSTESI 678


>gi|224089793|ref|XP_002308814.1| predicted protein [Populus trichocarpa]
 gi|222854790|gb|EEE92337.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  822 bits (2122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/704 (60%), Positives = 506/704 (71%), Gaps = 83/704 (11%)

Query: 1   MASNLCYSTCSLF----STPKLG---------RRTFTFSFQRDDSLSFYSK-TSLQKRSV 46
           MA NLC S  SL+    +TP               F  S  + ++LS  S+ TSLQ  +V
Sbjct: 1   MAYNLCSSPSSLYKPLCNTPSSSSRDSKSRNLNNNFDHS-SKINTLSSQSRATSLQITNV 59

Query: 47  SLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLA 106
           SLQ+ +   P + +        KTGSS KSYIWVNPKS RAS L+++SYD +Y SLV  A
Sbjct: 60  SLQDEEI--PRQETSKDSNFKEKTGSSSKSYIWVNPKSSRASILRKRSYDAKYTSLVNAA 117

Query: 107 ADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVI 166
             L+SCS  +DDV  VL                                           
Sbjct: 118 KYLNSCSPNKDDVLDVLS------------------------------------------ 135

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
                  VFRK RDLDKAE+LFD+ML+RGVKPDN TFST+ISCAR+ NL +KAVEWFE+M
Sbjct: 136 ----EFDVFRKARDLDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLADKAVEWFEKM 191

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
           PSFG +PD +T+S+MID+YGRAGNVE A  LYDRAR  +WR+D   FSTLI++Y  A NF
Sbjct: 192 PSFGLEPDDVTFSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATPFSTLIRIYKVARNF 251

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           DGCLN YEEMKA+GVKPN++ Y  LLD MGRAKRPWQVK  Y+++ DNGLSP++ TYA+L
Sbjct: 252 DGCLNFYEEMKALGVKPNLVIYKILLDDMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAAL 311

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L AYGRARYG+D   +YREMKEKG  +                   E+ EIFEDMKSS  
Sbjct: 312 LHAYGRARYGDDAFKIYREMKEKGFGI-------------------ESVEIFEDMKSS-G 351

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            +PDSWTFSSMITI SC GKVSEAE   NEM EAGF+PN+F+LTSLIQCYGKAQR DDVV
Sbjct: 352 IKPDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFILTSLIQCYGKAQRIDDVV 411

Query: 467 RALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI 526
           +  NR+ +  ITPDDRFCGCLLNVMTQTP EEL KLV+CVE++N KLGYVVKLL+EEQD 
Sbjct: 412 KTFNRIFDWVITPDDRFCGCLLNVMTQTPNEELSKLVKCVERANPKLGYVVKLLVEEQDS 471

Query: 527 EGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRS 586
           EG+FK EAT+LF+SIS +VKKAYCNCLIDLC+ LN+LE + +LL+LGLTLE+YT+I SR+
Sbjct: 472 EGNFKNEATDLFDSISTEVKKAYCNCLIDLCIKLNMLERSWELLDLGLTLEIYTNIMSRT 531

Query: 587 PTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASV 646
            TQWSL+LKSLS GAALTALHIW+NDLSK LE+GE+ PPLLG+NTGHGK KYS+KGLA+V
Sbjct: 532 STQWSLNLKSLSPGAALTALHIWMNDLSKVLEAGEQLPPLLGMNTGHGKRKYSEKGLANV 591

Query: 647 FESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSLVSVPA 690
            ES+LKELN+PFH++PDKVGWFLTT+ AA+SWLESR S  +V A
Sbjct: 592 LESYLKELNSPFHEAPDKVGWFLTTKVAAESWLESRKSTDAVAA 635


>gi|356532361|ref|XP_003534742.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 646

 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/625 (61%), Positives = 482/625 (77%)

Query: 65  YPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLR 124
           Y + K+ S  K+ IWVNPKSPRA  L + SY TR +SL KLA  LDSC+ T+  V  +L+
Sbjct: 21  YDYAKSSSLSKTSIWVNPKSPRAKHLWKNSYHTRSSSLTKLARSLDSCNPTQQHVSEILK 80

Query: 125 CLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKA 184
            LGD+ LE D V ILN+M NP TA LA+ YF  K+K ++ VILYNVT+K+FR+ +D + A
Sbjct: 81  VLGDNVLEADAVFILNSMVNPYTALLAVEYFKQKIKHARHVILYNVTLKLFREVKDFEGA 140

Query: 185 ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244
           E+LFD+ML RGV P+ +TFST+I CA + +LP+KAV+WFE MPSFGC+PD    SSMI +
Sbjct: 141 EKLFDEMLQRGVNPNLITFSTMIICASVCSLPHKAVKWFEMMPSFGCEPDDNVCSSMIYS 200

Query: 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
           Y R GN +MA  LYDRA+ EKW +D   FS LIK++G +GN+DGCLNVY ++K +G KPN
Sbjct: 201 YARTGNADMALRLYDRAKAEKWHVDTVVFSGLIKMHGMSGNYDGCLNVYNDLKVLGAKPN 260

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           ++TYN LL  MGRAKR    K IY+EM +NGL+PNW TYA+LL+AY RAR+  D L+VY+
Sbjct: 261 LVTYNALLYAMGRAKRARDAKAIYEEMINNGLTPNWPTYAALLQAYCRARFNRDALNVYK 320

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           EMKEKG  L + LYN L  MCA+VG   EA +IFEDMKSS  C+PDS+T++S+I + S  
Sbjct: 321 EMKEKGKDLDILLYNMLFDMCANVGCEGEAVKIFEDMKSSGTCRPDSFTYASLINMYSSI 380

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
           GK+SE EAMFNEM+E+GFEPN+ VLTSL+ CYGKA+RTDDVV+  N+L +LGI+PD RFC
Sbjct: 381 GKISEMEAMFNEMMESGFEPNIIVLTSLVHCYGKAKRTDDVVKIFNQLMDLGISPDGRFC 440

Query: 485 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 544
            CLL  MTQ PKEELGKL  CVEK+N KLG V++ ++E+Q+  GDF+ EA+EL NS   D
Sbjct: 441 DCLLYAMTQVPKEELGKLTGCVEKANPKLGSVLRYIMEKQEGGGDFRMEASELLNSTEAD 500

Query: 545 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 604
           +KK+ CNCLIDLCVNL++ + A  LL+LGLTLE+YTDIQSRS  +WSLHLK LS+GAALT
Sbjct: 501 IKKSMCNCLIDLCVNLDVPDRARDLLDLGLTLEIYTDIQSRSQAKWSLHLKRLSVGAALT 560

Query: 605 ALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 664
           AL +WINDLSK LE GEE PPLLGINTG GKH++SDK L +VFE +LKEL APFH + +K
Sbjct: 561 ALSVWINDLSKTLELGEELPPLLGINTGGGKHRFSDKVLPTVFELYLKELKAPFHKAANK 620

Query: 665 VGWFLTTEAAAKSWLESRSSLVSVP 689
            GWFL T  AA SWL+SR S+V +P
Sbjct: 621 AGWFLATSEAATSWLQSRGSVVVLP 645


>gi|356557981|ref|XP_003547288.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 706

 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/624 (61%), Positives = 475/624 (76%)

Query: 66  PHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRC 125
           P+ K+    K+ IWVNPKSPRA  L + SY  R +SL KLA  LDSC+ T++ V  +L+ 
Sbjct: 82  PNAKSSPLSKTSIWVNPKSPRAKHLWKNSYHARSSSLTKLAKSLDSCNPTQEHVSEILKV 141

Query: 126 LGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAE 185
           LGD  LE D V ILN+M NP TA LA+ YF  K+K+ + VILYNVT+K+FRK +D + AE
Sbjct: 142 LGDSVLEPDAVFILNSMVNPYTALLAVEYFKQKVKSVRHVILYNVTLKLFRKVKDFEGAE 201

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
           +LFD+ML RGV P+ +TFST+ISCA + +LP+KAV+WFE MPSFGC+PD    SSMI AY
Sbjct: 202 KLFDEMLHRGVNPNLITFSTMISCASVCSLPHKAVKWFEMMPSFGCEPDNNVCSSMIYAY 261

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
            R GN +MA  LYDRA+  KW +D   FS LIK+YG +GN+ GCLNVY +MK +G KPN+
Sbjct: 262 TRTGNTDMALRLYDRAKAGKWHVDTAVFSGLIKMYGVSGNYVGCLNVYNDMKVLGAKPNL 321

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
            TYN LL  MGRAKR    K IY EM  NGLSPNW TYA+LL+AY RAR+  D L+VY+E
Sbjct: 322 TTYNALLYAMGRAKRARDAKAIYGEMISNGLSPNWPTYAALLQAYCRARFNRDALNVYKE 381

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           MKEKG  L + LYN L  MCA+VG  DEA +IFE MKSS  C PDS+T++S+I + S  G
Sbjct: 382 MKEKGKDLDILLYNMLFDMCANVGCVDEAVKIFEHMKSSGTCPPDSFTYASLINMYSSIG 441

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 485
           K+ E EAMFNEM+E+GFEPN+ VLTSL+ CYGKA+RTDDVV+  N+L +LGI+PD RFC 
Sbjct: 442 KILEMEAMFNEMMESGFEPNIIVLTSLVHCYGKAKRTDDVVKIFNQLMDLGISPDGRFCD 501

Query: 486 CLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 545
           CLL  MTQ PKEELGKL  CVEK+N KLG V++ ++E+Q+  GDF+ EA+ELFNS   DV
Sbjct: 502 CLLYAMTQVPKEELGKLSGCVEKANPKLGSVLRYIMEKQEGGGDFRTEASELFNSTEADV 561

Query: 546 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 605
           KK+ CNCLIDLCV+L++ + A  LL+LGLTLE+Y DIQSRS  +WSLHLK LS+GAALTA
Sbjct: 562 KKSMCNCLIDLCVSLDVPDRARDLLDLGLTLEIYPDIQSRSQAKWSLHLKRLSVGAALTA 621

Query: 606 LHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKV 665
           L +WI+DLSKALE GEE PPLLGINTG GKH++SDK L +VFES+LKEL APFH   +K 
Sbjct: 622 LSVWISDLSKALELGEELPPLLGINTGGGKHRFSDKVLPTVFESYLKELKAPFHKDANKA 681

Query: 666 GWFLTTEAAAKSWLESRSSLVSVP 689
           GWFL T  AA SWL+SR S V++P
Sbjct: 682 GWFLATSEAATSWLQSRGSTVALP 705


>gi|356557983|ref|XP_003547289.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 707

 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/659 (58%), Positives = 484/659 (73%), Gaps = 10/659 (1%)

Query: 31  DSLSFYSKT-SLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASK 89
           +S S++S+   L    +S  + ++    + +  PQ P  K+   P++ IWVNPKSPRA  
Sbjct: 41  NSFSYFSRHFKLPTFPLSHNKPKTLLQVQAANTPQDPDAKSSPLPQTSIWVNPKSPRAKH 100

Query: 90  LKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAA 149
           L +  Y  R +SL KLA  LDSC+ T+  V  +LR LGD+  E D V+ILN+M NP TA 
Sbjct: 101 LWKNPYHARSSSLTKLAKSLDSCNPTQQHVSEILRVLGDNVFESDAVVILNSMVNPYTAL 160

Query: 150 LALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC 209
           LA+ YF  K+K S+ V+LYNVT+K+FR  RD + AE+LFD+ML RGVKP+N TFST+++C
Sbjct: 161 LAVNYFNQKIKPSRHVVLYNVTLKLFRASRDFEGAEKLFDEMLQRGVKPNNFTFSTMVNC 220

Query: 210 ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
           A      NK VE FE+M  FG +PD +T S+M+ AY  + NV+ A  LYDRA  EKW +D
Sbjct: 221 A------NKPVELFEKMSGFGYEPDGITCSAMVYAYALSNNVDKAVSLYDRAIAEKWCLD 274

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
             AFS LIK+Y  AGN+D CL +Y+EMK +GVKPN++TYN LL  M +A++  Q K IYK
Sbjct: 275 AAAFSALIKMYSMAGNYDRCLKIYQEMKVLGVKPNVVTYNTLLGAMLKAEKHRQAKAIYK 334

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           EM  NG+SP++ TYA LL  Y  A Y ED L VY+EMK  GM ++  LYN LLAM AD+G
Sbjct: 335 EMRSNGVSPDFITYACLLEVYTIAHYSEDALGVYKEMKGNGMDMTADLYNKLLAMYADMG 394

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
           Y D A EIF +M SS  CQPDSWTF+S+I I S  GKVSEAE M NEM+++GF+P +FVL
Sbjct: 395 YIDRAVEIFYEMNSSGTCQPDSWTFASLIAIYSRSGKVSEAEGMLNEMIQSGFQPTIFVL 454

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 509
           TSL+ CYGKA+RTDDVV+   +L ELGI P+D FC  LLNV+TQ PKEELGKL +C+EK+
Sbjct: 455 TSLVHCYGKAKRTDDVVKVFKQLLELGIVPNDHFCCSLLNVLTQAPKEELGKLTDCIEKA 514

Query: 510 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKL 569
           N+KLG VVK L+EE+  +GDF+ E +E  NSI  +VK   CNCLIDLCV LN+ E AC L
Sbjct: 515 NTKLGSVVKYLVEEEG-DGDFRNEVSEFLNSIDAEVKMPLCNCLIDLCVKLNVPERACDL 573

Query: 570 LELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGI 629
           L+LGL LE+Y +IQS+S TQWSLHLK LS+GAA+TALH+WINDLSKALESGE+ PPLLGI
Sbjct: 574 LDLGLMLEIYKNIQSKSQTQWSLHLKELSVGAAMTALHVWINDLSKALESGEDLPPLLGI 633

Query: 630 NTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSLVSV 688
           NTG GKHKYS+KGLA +FESHLKELNAPFH++  K GWFL T+A AKSWLESR S+  +
Sbjct: 634 NTGKGKHKYSEKGLAGIFESHLKELNAPFHEA--KAGWFLATKAPAKSWLESRGSIADL 690


>gi|356577949|ref|XP_003557083.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 700

 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/639 (60%), Positives = 473/639 (74%), Gaps = 15/639 (2%)

Query: 53  SSNP-----TKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAA 107
           S NP      + +  PQ P  K+ S  K+ IWVNPKSPR   L +  Y  R +SL KLA 
Sbjct: 54  SHNPKTLLQVQATYTPQDPDAKSSSLSKTSIWVNPKSPRVKHLWKNPYHARSSSLTKLAK 113

Query: 108 DLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTY-FTNKLKASKEVI 166
            LDSC+ T+  V  +L+ LGD   E D V+ILN+M NP TA LA+ Y FT K+K S+ V+
Sbjct: 114 SLDSCNPTQQRVSQILQVLGDKVFESDAVVILNSMVNPYTALLAVNYYFTQKIKPSRHVV 173

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           LYNVT+K+FR  RD +  E+LFD+ML RGVKP+N TFST+++CA      NK VE FE+M
Sbjct: 174 LYNVTLKLFRAVRDFEGEEKLFDEMLQRGVKPNNFTFSTMVNCA------NKPVELFEKM 227

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
             FG +PD +T S+M+ AY  + NV+ A  LYDRA  EKW +D   FS LIK+Y  AGN+
Sbjct: 228 SGFGYEPDGITCSAMVYAYALSNNVDKAVSLYDRAIAEKWCLDAATFSALIKMYSMAGNY 287

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D CL VY+EMK +G KPN++TYN LL  M +A++  Q K IYKEM  NG+SP++ TYA L
Sbjct: 288 DKCLKVYQEMKVLGAKPNVVTYNTLLGAMLKAQKHRQAKAIYKEMKSNGVSPDFITYACL 347

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L  Y  A   E+ L VY+EMK  GM ++  LYN LLAMCADVGYTD A EIF +MKSS  
Sbjct: 348 LEVYTIAHCSEEALGVYKEMKGNGMDMTADLYNKLLAMCADVGYTDRAAEIFYEMKSSGT 407

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
           CQPDSWTFSSMIT+ S  GKVSEAE M NEM+++GF+P +FVLTSL+ CYGKA+RTDDVV
Sbjct: 408 CQPDSWTFSSMITMYSRSGKVSEAEGMLNEMIQSGFQPTIFVLTSLVHCYGKAKRTDDVV 467

Query: 467 RALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI 526
           +   +L +LGI P+D FC  LLNV+TQTPKEE GKL +C+EK+N+KLG VVK L+EE+  
Sbjct: 468 KVFKQLLDLGIVPNDHFCCSLLNVLTQTPKEEYGKLTDCIEKANTKLGSVVKYLVEEEG- 526

Query: 527 EGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRS 586
           +GDFKKEA+E  NSI   VK   CNCLIDLCV LN+ E AC LL+LGL LE+Y +IQS+S
Sbjct: 527 DGDFKKEASEFLNSIDAKVKMPLCNCLIDLCVKLNVPERACDLLDLGLVLEIYPNIQSKS 586

Query: 587 PTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASV 646
            TQWSLHLK LS+GAA+TALH+WIN+LSKALESGE+ PPLLGINTG GK KYS+KGLA V
Sbjct: 587 QTQWSLHLKELSVGAAMTALHVWINELSKALESGEDLPPLLGINTGKGKLKYSEKGLAGV 646

Query: 647 FESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSL 685
           FESHLKEL+APFH++  K GWFL T+AAAKSWLESR S+
Sbjct: 647 FESHLKELHAPFHEA--KAGWFLVTKAAAKSWLESRGSI 683


>gi|212275714|ref|NP_001130387.1| uncharacterized protein LOC100191483 [Zea mays]
 gi|194689000|gb|ACF78584.1| unknown [Zea mays]
 gi|414865541|tpg|DAA44098.1| TPA: hypothetical protein ZEAMMB73_448674 [Zea mays]
          Length = 691

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/695 (53%), Positives = 472/695 (67%), Gaps = 20/695 (2%)

Query: 5   LCYSTCSLFSTPKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQ 64
           LC S  SL   P    R  + SF   +       +S     VS+QET          +  
Sbjct: 6   LCRSPSSLL--PSWPHRPISASFNPKN------PSSPVAAHVSVQETPPQPQDPSPPSDS 57

Query: 65  YPHGK--TGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDS-CSATEDDVFS 121
            P+G   + SS   ++WVNP SPRA+ +      +   + +  AA     C  TE  V +
Sbjct: 58  NPNGTRPSSSSNTRFLWVNPNSPRAADVARARAGSGRRARLASAAAALGACETTESAVEA 117

Query: 122 VLRC-LGDDFLEQDCVIILNNMTNPDTA--ALALTYFTNKLKASKEVILYNVTMKVFRKC 178
            L+    +   EQD VI+LN           LAL +F    K  K+VILYNV +K+ RK 
Sbjct: 118 ALQAAFPEPPSEQDAVIVLNTAAATRAETAVLALRWFLGNAKVRKKVILYNVVLKLLRKK 177

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           R   + E L+ +ML  GV+PDN TFST+ISCAR   L +KAVEWF++MP FGC PD LTY
Sbjct: 178 RLWSETEALWAEMLRDGVQPDNATFSTVISCARACGLHSKAVEWFDKMPEFGCSPDMLTY 237

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           S++IDAYG AGN E A  LYDRAR EKW++DP   ST+IK++ T+GNFDG LNV+EEMKA
Sbjct: 238 SAVIDAYGHAGNSEAALRLYDRARAEKWQLDPVICSTVIKVHSTSGNFDGALNVFEEMKA 297

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
           IGV+PN++ YN +LD MGRA RPW VKTI++EM D  + P+  TY  LL AY RARYGED
Sbjct: 298 IGVRPNLVVYNTMLDAMGRALRPWVVKTIHREMVDQQVQPSRATYCCLLHAYTRARYGED 357

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS--ENCQPDSWTFSS 416
            ++VYR MK++ M + V LYN LL+MCAD+GY DEA EIF DMK+S   + +PDSW++SS
Sbjct: 358 AMAVYRLMKDEAMGIDVMLYNMLLSMCADIGYVDEAEEIFRDMKASMGAHSKPDSWSYSS 417

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           M+T+ S    V  AE + NEM+EAGF+PN+FVLTSLI+CYGK  RTDDVVR+   L +LG
Sbjct: 418 MVTLYSSTANVLSAEGILNEMVEAGFKPNIFVLTSLIRCYGKVGRTDDVVRSFGMLQDLG 477

Query: 477 ITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536
           I PDDRFCGCLL+V   TP EELGK++ C+E+SN +LG VVKLL++    E  F++ A E
Sbjct: 478 IIPDDRFCGCLLSVAANTPAEELGKVISCIERSNVQLGAVVKLLVDRSSSE-SFREAARE 536

Query: 537 LFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKS 596
           L  S    VK  YCNCL+DLCVNLN +E AC LL+    L +Y +IQ+R+ TQWSLHL+ 
Sbjct: 537 LLRSSRGVVKMPYCNCLMDLCVNLNQMEKACALLDAAQQLGIYANIQTRTQTQWSLHLRG 596

Query: 597 LSLGAALTALHIWINDLSKALESGEE-FPPLLGINTGHGKHKYSDKGLASVFESHLKELN 655
           LS+GAALT LH+W+NDL  +L++G E  PPLLGI+TG GK+ YSD+GLA++FE+HLKEL+
Sbjct: 597 LSVGAALTTLHVWMNDLYTSLQTGNEGLPPLLGIHTGQGKNTYSDRGLAAMFEAHLKELD 656

Query: 656 APFHDSPDKVGWFLTTEAAAKSWLESR--SSLVSV 688
           APFH++PDK GWFLTT  AAK WLES+  S LV+V
Sbjct: 657 APFHEAPDKAGWFLTTNVAAKQWLESKAASELVTV 691


>gi|357113402|ref|XP_003558492.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Brachypodium distachyon]
          Length = 688

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/688 (53%), Positives = 471/688 (68%), Gaps = 16/688 (2%)

Query: 8   STCSLFSTPKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPH 67
           S  S  S P    R+   SFQ  +     S +S     VS+QE+   +P + +   Q P 
Sbjct: 10  SPSSFLSWP---HRSAALSFQPKNP----STSSPTAAHVSVQESPPQDPPRPAGPGQNP- 61

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDS-CSATEDDVFSVLRCL 126
            KT S+   ++WVNP SPRA++L      +   + +  AA     C   E  V + L   
Sbjct: 62  -KTSSNNTRFLWVNPNSPRAAELARARAGSARRARLGAAAAALGACEPAEAPVAAALAAA 120

Query: 127 GDDFL-EQDCVIILNNMT-NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKA 184
             +   EQD VI+LN +  NP TA LAL +F    +   + ILYNV +K  RK R     
Sbjct: 121 FPEPPSEQDAVIVLNTVVGNPATALLALRWFLGNAEVRNKGILYNVVLKALRKRRRWSDT 180

Query: 185 ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244
           E L+D+ML  GV+PDN TFST+ISCAR   LP KAVEWFE+MP  GC PD LTYS++IDA
Sbjct: 181 EALWDEMLRDGVQPDNTTFSTVISCARACGLPRKAVEWFEKMPGLGCSPDMLTYSAVIDA 240

Query: 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
           YGRAG+ +MA  LYDRAR EK ++DP   +T+IK++ T+GNF G LNV+EEMKA+GVKPN
Sbjct: 241 YGRAGDADMALRLYDRARAEKCQLDPVICATVIKVHSTSGNFAGALNVFEEMKAVGVKPN 300

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           ++ YN +LD MGRA RPW VKTI++EM    + PN  TY  LL+AY RARYGED + VYR
Sbjct: 301 LVVYNTVLDAMGRAMRPWVVKTIHREMVSQQVQPNRATYCCLLQAYTRARYGEDAMVVYR 360

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC--QPDSWTFSSMITICS 422
            MK++ M + V LYN LL+MCAD+GY DEA EIF DMK+  +   +PDSWT+SSM+T+ S
Sbjct: 361 MMKDEVMDIDVVLYNMLLSMCADIGYIDEAEEIFRDMKAHTDTRFKPDSWTYSSMVTLYS 420

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           C G V  AE +  EM EAGF+PN+F+LTSLI+CYGKA  TDDVVR+   L +L I PDDR
Sbjct: 421 CTGNVLGAEGILKEMAEAGFKPNIFILTSLIRCYGKAGHTDDVVRSFGMLEDLNIRPDDR 480

Query: 483 FCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 542
           FCGCLL V   TP EELGK+V+C+++SN++LG VVKLL++       F++ A  + + + 
Sbjct: 481 FCGCLLTVAADTPVEELGKVVDCIDRSNAQLGTVVKLLVDRNASTESFREAARGILSGVR 540

Query: 543 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAA 602
             VK  YCNCL+DLCVNL   E AC LL++ L L+VY ++Q+++ TQWSLHL+ LS+GAA
Sbjct: 541 GVVKVPYCNCLMDLCVNLGQTEKACALLDVALQLDVYRNVQTKTQTQWSLHLRGLSVGAA 600

Query: 603 LTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSP 662
           LT LH+W+NDL   L+SGEE PPLLGI+TG G++ YSDKGLAS FESHLKE++APFH +P
Sbjct: 601 LTTLHVWMNDLRSTLQSGEELPPLLGIHTGEGRNMYSDKGLASAFESHLKEIDAPFHAAP 660

Query: 663 DKVGWFLTTEAAAKSWLESR--SSLVSV 688
           DK GWFLTT  AAK WL+++  S LV+V
Sbjct: 661 DKAGWFLTTSVAAKHWLKAKESSELVAV 688


>gi|297600539|ref|NP_001049380.2| Os03g0215900 [Oryza sativa Japonica Group]
 gi|108706847|gb|ABF94642.1| RSP67.2, putative, expressed [Oryza sativa Japonica Group]
 gi|255674311|dbj|BAF11294.2| Os03g0215900 [Oryza sativa Japonica Group]
          Length = 676

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/562 (58%), Positives = 424/562 (75%), Gaps = 5/562 (0%)

Query: 132 EQDCVIILNNMT-NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDD 190
           EQD VI+LN  +  P    LAL +F    +  KEVILYNV +K  RK R    AE L+++
Sbjct: 115 EQDAVIVLNTTSARPAAVVLALWWFLRNAEVRKEVILYNVALKALRKRRRWSDAEALWEE 174

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           ML  GV+PDN TFST+ISCAR   +P KAVEWFE+MP FGC PD LTYS++IDAYGRAG+
Sbjct: 175 MLREGVQPDNATFSTVISCARACGMPGKAVEWFEKMPDFGCSPDMLTYSAVIDAYGRAGD 234

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
            E A  LYDRAR EKW++DP   +T+I+++ ++GNFDG LNV+EEMKA GVKPN++ YN 
Sbjct: 235 AETALRLYDRARAEKWQLDPVICATVIRVHSSSGNFDGALNVFEEMKAAGVKPNLVVYNT 294

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           +LD MGRA RPW VKTI++E+      PN  TY  LL AY RARYGED ++VYR MK++ 
Sbjct: 295 VLDAMGRAMRPWVVKTIHRELVSQEAVPNKATYCCLLHAYTRARYGEDAMAVYRVMKDEV 354

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS--ENCQPDSWTFSSMITICSCRGKVS 428
           M + V LYN LL+MCAD+GY +EA EIF DMK+S     +PDSW++SSM+T+ SC G V+
Sbjct: 355 MDIDVVLYNMLLSMCADIGYVEEAEEIFRDMKASMDSRSKPDSWSYSSMVTLYSCTGNVA 414

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
            AE + NEM+EAGF+PN+F+LTSLI+CYGKA RTDDVVR+   L +LGITPDDRFCGCLL
Sbjct: 415 GAEGILNEMVEAGFKPNIFILTSLIRCYGKAGRTDDVVRSFAMLEDLGITPDDRFCGCLL 474

Query: 489 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKA 548
            V   TP +ELGK++ C+++S+++LG VV+LL++        ++ A EL       V+  
Sbjct: 475 TVAAGTPADELGKVIGCIDRSSAQLGAVVRLLVDAAAPSEPLREAAGELLGGARGVVRMP 534

Query: 549 YCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHI 608
           YCNCL+DL VNL+ +E AC LL++ L L +Y+++Q+R+ TQWSLHL+ LS+GAALT LH+
Sbjct: 535 YCNCLMDLAVNLSQMEKACALLDVALRLGIYSNVQTRTQTQWSLHLRGLSVGAALTTLHV 594

Query: 609 WINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWF 668
           W++DL  AL++G+E PPLLGI+TG GK+ YS KGLA+VFESHLKEL+APFH++PDK GWF
Sbjct: 595 WMSDLYAALQAGDELPPLLGIHTGQGKNTYSYKGLATVFESHLKELDAPFHEAPDKAGWF 654

Query: 669 LTTEAAAKSWLESRSS--LVSV 688
           LTT  AA+ WLE++ S  LV+V
Sbjct: 655 LTTSVAARHWLETKKSAELVAV 676


>gi|242036493|ref|XP_002465641.1| hypothetical protein SORBIDRAFT_01g042790 [Sorghum bicolor]
 gi|241919495|gb|EER92639.1| hypothetical protein SORBIDRAFT_01g042790 [Sorghum bicolor]
          Length = 691

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/694 (52%), Positives = 466/694 (67%), Gaps = 18/694 (2%)

Query: 5   LCYSTCSLFSTPKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQ 64
           LC S  SL   P    R    SF   +       +S     VS+Q+T          +  
Sbjct: 6   LCRSPSSL--VPSWPHRPIPASFNPKN------PSSPVAAHVSVQDTPPQPQDPAPPSDS 57

Query: 65  YPHG-KTGSSPKSYIWVNPKSPRASKLKEKSYDT--RYNSLVKLAADLDSCSATEDDVFS 121
            P+G K  S+   ++WVNP SPRA+ +      +  R       AA      A      +
Sbjct: 58  SPNGTKPSSNTTRFLWVNPNSPRAADVARARAGSGRRARLSSAAAALGACEPAEAAVEAA 117

Query: 122 VLRCLGDDFLEQDCVIILNNMT--NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR 179
           +     +   EQD VI+LN      P+TA LAL +F    K  K+VILYNV + + RK R
Sbjct: 118 LEAAFPEPPSEQDAVIVLNTAAAARPETALLALRWFLGNAKVRKKVILYNVVLNLLRKKR 177

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
              + E L+ +ML  GV+PDN TFST+ISCAR   L +KAVEWF++MP FGC PD LTYS
Sbjct: 178 HWSETEALWAEMLRDGVQPDNATFSTVISCARACGLHSKAVEWFDKMPEFGCSPDMLTYS 237

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           ++IDAYGRAGN E A  LYDRAR EKW++DP   ST+IK++  +GNFDG LNV+EEMKA 
Sbjct: 238 AVIDAYGRAGNSEAALRLYDRARAEKWQLDPVICSTVIKVHSISGNFDGALNVFEEMKAT 297

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           GVKPN++ YN +LD MGRA RPW VKTI++EM D  + P+  TY  LL AY RARYGED 
Sbjct: 298 GVKPNLVVYNTMLDAMGRALRPWVVKTIHREMVDQQVQPSRATYCCLLHAYTRARYGEDA 357

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC--QPDSWTFSSM 417
           ++VYR MK++ M + V LYN LL+MCAD+GY DEA EIF DMK+S +   +PDSW++SSM
Sbjct: 358 MAVYRLMKDEAMDIDVMLYNMLLSMCADIGYVDEAEEIFRDMKASMDACSKPDSWSYSSM 417

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           +T+ S    V  AE + NEM+EAGF+PN+FVLTSLI+CYGK  RTDDVV++   L +L I
Sbjct: 418 VTLYSSTANVLGAEGILNEMVEAGFKPNIFVLTSLIRCYGKVGRTDDVVKSFGMLQDLCI 477

Query: 478 TPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 537
            PDDRFCGCLL+V   TP EELGK++ C+E SN++LG VVKLL++       F++ A+EL
Sbjct: 478 IPDDRFCGCLLSVAANTPVEELGKVISCIETSNAQLGAVVKLLVDRSSSPESFREAASEL 537

Query: 538 FNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSL 597
                  VK  YCNCL+DLCVNLN +E AC LL+    L +Y +IQ+R+ TQWSLHL+ L
Sbjct: 538 LGCSRGVVKMPYCNCLMDLCVNLNQMEKACALLDAAQQLSIYANIQTRTQTQWSLHLRGL 597

Query: 598 SLGAALTALHIWINDLSKALESGEE-FPPLLGINTGHGKHKYSDKGLASVFESHLKELNA 656
           S+GAALT LH+W+NDL  +L++G E  PPLLGI+TG GK+ YSD+GLA++FE+HLKEL+A
Sbjct: 598 SVGAALTTLHVWMNDLYTSLQTGNEGLPPLLGIHTGQGKNTYSDRGLAAMFEAHLKELDA 657

Query: 657 PFHDSPDKVGWFLTTEAAAKSWLESR--SSLVSV 688
           PFH++PDK GWFLTT  AAK WLE++  S LV+V
Sbjct: 658 PFHEAPDKAGWFLTTSVAAKHWLETKAASELVTV 691


>gi|125585400|gb|EAZ26064.1| hypothetical protein OsJ_09917 [Oryza sativa Japonica Group]
          Length = 552

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/552 (55%), Positives = 403/552 (73%), Gaps = 10/552 (1%)

Query: 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF 203
            P    LAL +F    +  KEVILYNV +K  RK R    AE L+++ML  GV+PDN TF
Sbjct: 4   RPAAVVLALWWFLRNAEVRKEVILYNVALKALRKRRRWSDAEALWEEMLREGVQPDNATF 63

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE---MAFGLYDR 260
           ST+ISCAR   +P KAVEWFE+MP FGC PD LTYS++IDAYGRA        A      
Sbjct: 64  STVISCARACGMPGKAVEWFEKMPDFGCSPDMLTYSAVIDAYGRARGRRDGPPACTTAPA 123

Query: 261 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
            RN  W +     +T+I+++ ++GNFDG LNV+EEMKA GVKPN++ YN +LD MGRA R
Sbjct: 124 PRNGSWTV---ICATVIRVHSSSGNFDGALNVFEEMKAAGVKPNLVVYNTVLDAMGRAMR 180

Query: 321 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 380
           PW VKTI++E+      PN  TY  LL AY RARYGED ++VYR MK++ M + V LYN 
Sbjct: 181 PWVVKTIHRELVSQEAVPNKATYCCLLHAYTRARYGEDAMAVYRVMKDEVMDIDVVLYNM 240

Query: 381 LLAMCADVGYTDEAFEIFEDMKSS--ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           LL+MCAD+GY +EA EIF DMK+S     +PDSW++SSM+T+ SC G V+ AE + NEM+
Sbjct: 241 LLSMCADIGYVEEAEEIFRDMKASMDSRSKPDSWSYSSMVTLYSCTGNVAGAEGILNEMV 300

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
           EAGF+PN+F+LTSLI+CYGKA RTDDVVR+   L +LGITPDDRFCGCLL V   TP +E
Sbjct: 301 EAGFKPNIFILTSLIRCYGKAGRTDDVVRSFAMLEDLGITPDDRFCGCLLTVAAGTPADE 360

Query: 499 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCV 558
           LGK++ C+++S+++LG VV+LL++        ++ A EL       V+  YCNCL+DL V
Sbjct: 361 LGKVIGCIDRSSAQLGAVVRLLVDAAAPSEPLREAAGELLGGARGVVRMPYCNCLMDLAV 420

Query: 559 NLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALE 618
           NL+ +E AC LL++ L L +Y+++Q+R+ TQWSLHL+ LS+GAALT LH+W++DL  AL+
Sbjct: 421 NLSQMEKACALLDVALRLGIYSNVQTRTQTQWSLHLRGLSVGAALTTLHVWMSDLYAALQ 480

Query: 619 SGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSW 678
           +G+E PPLLGI+TG GK+ YS KGLA+VFESHLKEL+APFH++PDK GWFLTT  AA+ W
Sbjct: 481 AGDELPPLLGIHTGQGKNTYSYKGLATVFESHLKELDAPFHEAPDKAGWFLTTSVAARHW 540

Query: 679 LESRSS--LVSV 688
           LE++ S  LV+V
Sbjct: 541 LETKKSAELVAV 552


>gi|218192336|gb|EEC74763.1| hypothetical protein OsI_10529 [Oryza sativa Indica Group]
          Length = 397

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 231/397 (58%), Positives = 304/397 (76%), Gaps = 4/397 (1%)

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           MKA GVKPN++ YN +LD MGRA RPW VKTI++E+      PN  TY  LL AY RARY
Sbjct: 1   MKAAGVKPNLVVYNTVLDAMGRAMRPWVVKTIHRELVSQEAVPNKATYCCLLHAYTRARY 60

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS--ENCQPDSWT 413
           GED ++VYR MK++ M + V LYN LL+MCAD+GY +EA EIF DMK+S     +PDSW+
Sbjct: 61  GEDAMAVYRVMKDEVMDIDVVLYNMLLSMCADIGYVEEAEEIFRDMKASMDSRSKPDSWS 120

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           +SSM+T+ SC G V+ AE + NEM+EAGF+PN+F+LTSLI+CYGKA RTDDVVR+   L 
Sbjct: 121 YSSMVTLYSCTGNVAGAEGILNEMVEAGFKPNIFILTSLIRCYGKAGRTDDVVRSFAMLE 180

Query: 474 ELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE 533
           +LGITPDDRFCGCLL V   TP +ELGK++ C+++S+++LG VV+LL++        ++ 
Sbjct: 181 DLGITPDDRFCGCLLTVAAGTPADELGKVIGCIDRSSAQLGAVVRLLVDAAAPSEPLREA 240

Query: 534 ATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLH 593
           A EL       V+  YCNCL+DL VNL+ +E AC LL++ L L +Y+++Q+R+ TQWSLH
Sbjct: 241 AGELLGGARGVVRMPYCNCLMDLAVNLSQMEKACALLDVALRLGIYSNVQTRTQTQWSLH 300

Query: 594 LKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKE 653
           L+ LS+GAALT LH+W++DL  AL++G+E PPLLGI+TG GK+ YS KGLA+VFESHLKE
Sbjct: 301 LRGLSVGAALTTLHVWMSDLYAALQAGDELPPLLGIHTGQGKNTYSYKGLATVFESHLKE 360

Query: 654 LNAPFHDSPDKVGWFLTTEAAAKSWLESRSS--LVSV 688
           L+APFH++PDK GWFLTT  AA+ WLE++ S  LV+V
Sbjct: 361 LDAPFHEAPDKAGWFLTTSVAARHWLETKKSAELVAV 397



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/178 (19%), Positives = 76/178 (42%), Gaps = 3/178 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +++YN  +    +       + +  +++ +   P+  T+  L+           A+  + 
Sbjct: 10  LVVYNTVLDAMGRAMRPWVVKTIHRELVSQEAVPNKATYCCLLHAYTRARYGEDAMAVYR 69

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR---NEKWRIDPNAFSTLIKLYG 281
            M     D D + Y+ ++      G VE A  ++   +   + + + D  ++S+++ LY 
Sbjct: 70  VMKDEVMDIDVVLYNMLLSMCADIGYVEEAEEIFRDMKASMDSRSKPDSWSYSSMVTLYS 129

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
             GN  G   +  EM   G KPN+    +L+   G+A R   V   +  + D G++P+
Sbjct: 130 CTGNVAGAEGILNEMVEAGFKPNIFILTSLIRCYGKAGRTDDVVRSFAMLEDLGITPD 187



 Score = 46.2 bits (108), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 89/203 (43%), Gaps = 10/203 (4%)

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M + G  P+ + Y++++DA GRA    +   ++    +++   +   +  L+  Y  A  
Sbjct: 1   MKAAGVKPNLVVYNTVLDAMGRAMRPWVVKTIHRELVSQEAVPNKATYCCLLHAYTRARY 60

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM---TDNGLSPNWNT 342
            +  + VY  MK   +  +++ YN LL          + + I+++M    D+   P+  +
Sbjct: 61  GEDAMAVYRVMKDEVMDIDVVLYNMLLSMCADIGYVEEAEEIFRDMKASMDSRSKPDSWS 120

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE---AFEIFE 399
           Y+S++  Y           +  EM E G + ++ +  +L+      G TD+   +F + E
Sbjct: 121 YSSMVTLYSCTGNVAGAEGILNEMVEAGFKPNIFILTSLIRCYGKAGRTDDVVRSFAMLE 180

Query: 400 DMKSSENCQPDSWTFSSMITICS 422
           D+       PD      ++T+ +
Sbjct: 181 DL----GITPDDRFCGCLLTVAA 199



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 42/146 (28%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDM---LDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           +V+LYN+ + +      +++AE +F DM   +D   KPD+                    
Sbjct: 79  DVVLYNMLLSMCADIGYVEEAEEIFRDMKASMDSRSKPDS-------------------- 118

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIK 278
            W              +YSSM+  Y   GNV  A G+ +      ++  PN F  ++LI+
Sbjct: 119 -W--------------SYSSMVTLYSCTGNVAGAEGILNEMVEAGFK--PNIFILTSLIR 161

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPN 304
            YG AG  D  +  +  ++ +G+ P+
Sbjct: 162 CYGKAGRTDDVVRSFAMLEDLGITPD 187


>gi|357476703|ref|XP_003608637.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509692|gb|AES90834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 715

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 246/631 (38%), Positives = 383/631 (60%), Gaps = 14/631 (2%)

Query: 69  KTGSSPKSYIWVNP---KSPRASKLKEK----SYDTRYNSLVKLAADLDSC--SATEDDV 119
           K  S PK   WVNP   K P  S  + K    SY+ +     + A  L++C  S+++++ 
Sbjct: 86  KVLSKPKP-TWVNPTKTKRPVLSHQRHKRSSVSYNPQLREFQRFAQRLNNCDVSSSDEEF 144

Query: 120 FSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR 179
              L  +       + +++LN++       +   +   +     E I YNVTMK  R  R
Sbjct: 145 MVCLEEIPSSLTRGNALLVLNSLRPWQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGR 204

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
                E L   M+D GV+ DN+T+ST+ISCA+  NL +KAV WFERM   G  PD +T+S
Sbjct: 205 QFGIIEELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFS 264

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           +++D Y R G VE    L++R R   W+ DP  FS L K++G AG++DG   V +EMK++
Sbjct: 265 AILDVYARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSL 324

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           GV+PN++ YN LL+ MG+A +P   +++++EM D+G++PN  T  ++++ YG+AR+ +D 
Sbjct: 325 GVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDA 384

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           L +++ MKE G  +   LYNTLL MCADVG  +EA  +F DMK SE+C+PDSW++++M+ 
Sbjct: 385 LELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLN 444

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           I    G V +A  +F EM + G E N+   T LIQC GKA   DD+V+  +   E G+ P
Sbjct: 445 IYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKP 504

Query: 480 DDRFCGCLLNV--MTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 537
           DDR CGCLL+V  ++Q  K++  K++ C++++N KL   ++L+++E+      K+E   +
Sbjct: 505 DDRLCGCLLSVVSLSQGSKDQ-EKVLACLQRANPKLVAFIQLIVDEETSFETVKEEFKAI 563

Query: 538 FNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSL 597
            ++   +V++ +CNCLID+C N +L+E A +LL LG     Y  + +++  +W L +++L
Sbjct: 564 MSNAVVEVRRPFCNCLIDICRNKDLVERAHELLYLGTLYGFYPSLHNKTQYEWCLDVRTL 623

Query: 598 SLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAP 657
           S+GAALTAL  W+  L+K ++  E  P L    TG G HK++ +GL   F SHL++L AP
Sbjct: 624 SVGAALTALEEWMTTLTKIVKREEALPDLFLAQTGTGAHKFA-QGLNISFASHLRKLAAP 682

Query: 658 FHDSPDKVGWFLTTEAAAKSWLESRSSLVSV 688
           F  S DKVG F+ T+    SW++S S   S+
Sbjct: 683 FRQSEDKVGCFIATKEDLISWVQSNSPSASI 713


>gi|356510655|ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Glycine max]
          Length = 712

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/622 (39%), Positives = 377/622 (60%), Gaps = 12/622 (1%)

Query: 72  SSPKSYIWVNPKSPRASKLKEK-------SYDTRYNSLVKLAADLDSCSATEDDVFSVLR 124
           S PKS  WVNP   + S L  +       SY  +   L + A  L+   ++ED+  + L 
Sbjct: 90  SKPKS-TWVNPTKAKRSVLSSERQKRATYSYSPQLRDLKRFAQKLNESGSSEDEFLACLE 148

Query: 125 CLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKA 184
            +      ++ ++ILN +       L L +   +     E I YNVTMK  R  +     
Sbjct: 149 EIPRPISRENALLILNTLKPWQKTNLFLNWIRTQNLLPMETIFYNVTMKSLRFGKQFGLI 208

Query: 185 ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244
           E L   M+D GV  DN+T+ST+ISCA+  NL +KAV WFERM   G  PD +TYS+++D 
Sbjct: 209 EDLAHQMIDNGVPLDNITYSTIISCAKKCNLYDKAVHWFERMYKTGLMPDEVTYSAILDV 268

Query: 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
           Y R G VE    LY+R R   W+ DP  FS L K++G AG++DG   V++EM+++GV+PN
Sbjct: 269 YARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVFQEMESVGVQPN 328

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           ++ YN LL+ MG+A +P   + +++EM ++G+ PN  T  ++++ YG+AR+  D L +++
Sbjct: 329 LVVYNTLLEAMGKAGKPGFARGLFEEMIESGIVPNEKTLTAVIKIYGKARWSRDALELWQ 388

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
            MKE G  +   LYNTLL MCADVG  +EA  +F DMK S +C+PDSW++++M+ I   +
Sbjct: 389 RMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSVHCKPDSWSYTAMLNIYGSQ 448

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
           G V +A  +F+EM + G E N+   T LIQC G+A   DD+VR  +   E GI PDDR C
Sbjct: 449 GDVDKAMKLFDEMCKLGVELNVMGFTCLIQCLGRAMEFDDLVRVFDISVERGIKPDDRLC 508

Query: 485 GCLLNV--MTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 542
           GCLL+V  ++Q   +E  K++ C++++N KL   + L+ +E+      K+E   + ++ +
Sbjct: 509 GCLLSVVSLSQGSNDE-EKVLACLQQANPKLVAFIHLIEDEKTSFETVKEEFKGIMSNAA 567

Query: 543 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAA 602
            +V++ +CNCLID+C N +LLE A +LL LG    +Y  + +++  +W L ++SLS+GAA
Sbjct: 568 VEVRRPFCNCLIDICRNKDLLERAHELLYLGTLYGLYPGLHNKTVEEWCLDVRSLSVGAA 627

Query: 603 LTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSP 662
           LTAL  W+  L+K ++  E  P L    TG G HK++ +GL   F SHL++L APF  S 
Sbjct: 628 LTALEEWMWTLTKIVKREETLPELFLAQTGTGAHKFA-QGLNISFASHLRKLAAPFKQSE 686

Query: 663 DKVGWFLTTEAAAKSWLESRSS 684
           +KVG F+ +     SW++S+S+
Sbjct: 687 EKVGCFIASREDLVSWVQSKST 708


>gi|15237467|ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46580, chloroplastic; Flags: Precursor
 gi|8885599|dbj|BAA97529.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008017|gb|AED95400.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 711

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/620 (40%), Positives = 374/620 (60%), Gaps = 12/620 (1%)

Query: 72  SSPKSYIWVNPKSPRASKL---KEK----SYDTRYNSLVKLAADLDSCSATEDDVF-SVL 123
           S PKS +WVNP  P+ S L   ++K    SY+ +   L   A  L+S   TE   F S+L
Sbjct: 86  SKPKS-VWVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLRAFALKLNSSIFTEKSEFLSLL 144

Query: 124 RCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDK 183
             +       + +++LN++           +  +K     E I YNVTMK  R  R    
Sbjct: 145 DEIPHPPNRDNALLVLNSLREWQKTHTFFNWVKSKSLFPMETIFYNVTMKSLRFGRQFQL 204

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
            E +  +M+  GV+ DN+T+ST+I+CA+  NL NKA+EWFERM   G  PD +TYS+++D
Sbjct: 205 IEEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILD 264

Query: 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
            Y ++G VE    LY+RA    W+ D  AFS L K++G AG++DG   V +EMK++ VKP
Sbjct: 265 VYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKP 324

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           N++ YN LL+ MGRA +P   ++++ EM + GL+PN  T  +L++ YG+AR+  D L ++
Sbjct: 325 NVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLW 384

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
            EMK K   +   LYNTLL MCAD+G  +EA  +F DMK S  C+PD++++++M+ I   
Sbjct: 385 EEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGS 444

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
            GK  +A  +F EML+AG + N+   T L+QC GKA+R DDVV   +   + G+ PDDR 
Sbjct: 445 GGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRL 504

Query: 484 CGCLLNVMTQ-TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 542
           CGCLL+VM      E+  K++ C+E++N KL   V L+++E+      K+E   + N+  
Sbjct: 505 CGCLLSVMALCESSEDAEKVMACLERANKKLVTFVNLIVDEKTEYETVKEEFKLVINATQ 564

Query: 543 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAA 602
            + ++ +CNCLID+C   N  E A +LL LG    +Y  + +++  +WSL ++SLS+GAA
Sbjct: 565 VEARRPFCNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAA 624

Query: 603 LTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSP 662
            TAL  W+  L+  ++  EE P L    TG G H++S +GLA+ F  HL++L+APF  S 
Sbjct: 625 ETALEEWMRTLANIIKRQEELPELFLAQTGTGTHRFS-QGLANSFALHLQQLSAPFRQS- 682

Query: 663 DKVGWFLTTEAAAKSWLESR 682
           D+ G F+ T+    SWLES+
Sbjct: 683 DRPGIFVATKEDLVSWLESK 702


>gi|356563451|ref|XP_003549976.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Glycine max]
          Length = 714

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/622 (39%), Positives = 373/622 (59%), Gaps = 12/622 (1%)

Query: 72  SSPKSYIWVNPKSPRASKLKEK-------SYDTRYNSLVKLAADLDSCSATEDDVFSVLR 124
           S PKS  WVNP   + S L  +       SY  +   L + A  L+   ++ED   + L 
Sbjct: 90  SKPKS-TWVNPTKAKRSVLSSERQKRATYSYSPQLRDLKRFAQKLNESGSSEDAFLACLE 148

Query: 125 CLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKA 184
            +      ++ ++ILN +       L L +   +     E I YNVTMK  R  +     
Sbjct: 149 EIPRPISRENALLILNTLKPWQKTNLFLNWIRTQNLLPMETIFYNVTMKSLRFGKQFGLI 208

Query: 185 ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244
           E L   M+D GV  DN+T+ST+ISCA+  NL +KAV WFERM      PD +TYS+++D 
Sbjct: 209 EELAHQMIDNGVPLDNITYSTIISCAKKCNLYDKAVHWFERMYKTSLMPDEVTYSAILDV 268

Query: 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
           Y R G VE    LY+R R   W+ DP  FS L K++G AG++DG   V++EM+++GV+PN
Sbjct: 269 YARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVFQEMESVGVQPN 328

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           ++ YN LL+ MG+A +P   + +++EM + G+ PN  T  ++++ YG+AR+  D L +++
Sbjct: 329 LVVYNTLLEAMGKAGKPVFARGLFEEMIELGIVPNEKTLTAVIKIYGKARWSRDALELWQ 388

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
            MKE G  +   LYNTLL MCADVG  +EA  +F DMK S +C+PDSW++++M+ I   +
Sbjct: 389 RMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSAHCKPDSWSYTAMLNIYGSQ 448

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
           G V +A  +FNEM ++G E N+   T LIQC G+A   DD+VR      E GI PDDR C
Sbjct: 449 GDVDKAMKLFNEMCKSGVELNVMGFTCLIQCLGRATEFDDLVRVFGISVERGIKPDDRLC 508

Query: 485 GCLLNV--MTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 542
           GCLL+V  ++Q   +E  K++ C++++N KL   + L+ +E+      K+E   + ++ +
Sbjct: 509 GCLLSVVSLSQGSNDE-EKVLACLQRANPKLVAFIHLIEDEKSSFESVKEEFKGIMSNAA 567

Query: 543 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAA 602
            +V++ +CNCLID+C N +L E A +LL LG    +Y  + +++  +W L ++SLS+GAA
Sbjct: 568 VEVRRPFCNCLIDICRNKDLRERAHELLYLGTLYGLYPGLHNKTDNEWCLDVRSLSVGAA 627

Query: 603 LTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSP 662
           LTAL  W+  L+K ++  E  P L    TG G HK++ +GL   F SHL++L APF  S 
Sbjct: 628 LTALEEWMWTLTKIVKREETLPELFLAQTGTGAHKFA-QGLNISFASHLRKLAAPFKQSE 686

Query: 663 DKVGWFLTTEAAAKSWLESRSS 684
           +K+G F+ +     SW++S+S+
Sbjct: 687 EKIGCFIASREDLVSWVQSKST 708


>gi|225427240|ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic [Vitis vinifera]
          Length = 723

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 246/631 (38%), Positives = 380/631 (60%), Gaps = 15/631 (2%)

Query: 72  SSPKSYIWVNPKSPRASKL---KEKSYDTRYNSLVK----LAADLDSCSATEDDVF-SVL 123
           S PKS  W+NP  P+ S L   + K ++  YN  ++     A  ++   ++++  F +VL
Sbjct: 99  SKPKS-TWINPTKPKPSVLSLQRHKRHNYSYNPQIRDLKLFAKKINESESSDESEFLAVL 157

Query: 124 RCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDK 183
             +       + +++LN++       L   +   +     E I YNVTMK  R  R    
Sbjct: 158 EQIPHPPTRDNALLLLNSLKPWPKTYLFFNWIKTQNLFPMETIFYNVTMKSLRFGRQFQL 217

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
            E L ++M+  GV+ DN+T+ST+I+CA+  NL +KAV+WFERM   G  PD +TYS+++D
Sbjct: 218 IEELANEMISTGVELDNITYSTIITCAKRCNLFDKAVKWFERMYKTGLMPDEVTYSAILD 277

Query: 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
            Y + G VE    LY+R R   W+ DP AF+ L K++G AG++DG   V +EMK++GV+P
Sbjct: 278 VYAKLGKVEEVLSLYERGRASGWKPDPIAFAVLGKMFGEAGDYDGIRYVLQEMKSLGVQP 337

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           N++ YN LL+ MG+A +P   +++++EM  +G+ P+  T  +L++ YG+AR+  D L ++
Sbjct: 338 NLVVYNTLLEAMGKAGKPGLARSLFEEMVGSGVIPDAKTLTALVKIYGKARWARDALELW 397

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
             M+  G  +   LYNTLL+MCAD+G  +EA ++FEDMK SE+C+PDSW++++M+ I   
Sbjct: 398 ERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLFEDMKKSEHCRPDSWSYTAMLNIYGS 457

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
            G V  A  +F+EM E G + N+   T L QC G+A+R DD+V+      E G+ PDDR 
Sbjct: 458 GGNVDRAMQLFDEMSELGVQINVMGCTCLSQCLGRARRIDDLVKVFEVSLERGVKPDDRL 517

Query: 484 CGCLLNVMTQTP-KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 542
           CGCLL+V++     E+  K++ C++++N KL   V LL E+   E   K+E   +    +
Sbjct: 518 CGCLLSVVSFCEGAEDANKVLACLQQANPKLVAFVNLLEEKISFEA-LKEEFRGILTDTA 576

Query: 543 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAA 602
            + ++ +CNCLID+C N +L E A +LL LG    +Y  + +R+  +W L ++SLS+GAA
Sbjct: 577 VEARRPFCNCLIDICRNRSLHERAHELLYLGTLYGLYPGLHNRTADEWCLDVRSLSVGAA 636

Query: 603 LTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSP 662
            TAL  W+  LSK ++  E  P     NTG G HK+S +GLAS F SH+K+L APF  S 
Sbjct: 637 HTALEEWMGTLSKIVQREEALPEAFSANTGTGTHKFS-QGLASAFASHVKKLAAPFTQSE 695

Query: 663 DKVGWFLTTEAAAKSWLESRSSLVSVPAKVT 693
           +K G F+ T     SW++SR   +  PA V 
Sbjct: 696 EKAGCFVATREDLVSWVQSR---ILSPAAVV 723


>gi|297791025|ref|XP_002863397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309232|gb|EFH39656.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 711

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/620 (39%), Positives = 372/620 (60%), Gaps = 12/620 (1%)

Query: 72  SSPKSYIWVNPKSPRASKL---KEK----SYDTRYNSLVKLAADLDSCSATEDDVF-SVL 123
           S PKS +WVNP  P+ S L   ++K    SY+ +   L   A  L+S + TE   F S+L
Sbjct: 86  SKPKS-VWVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLRAFAQKLNSSNFTEKSEFLSLL 144

Query: 124 RCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDK 183
             +       + +++LN++           +  +K     E I YNVTMK  R  R    
Sbjct: 145 DEIPHPPDRDNALLVLNSLREWQKTHTFFNWVKSKNLFPMETIFYNVTMKSLRFGRQFYL 204

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
            E +  +M+  GV+ DN+T+ST+I+CA+  N  +KA+EWFERM   G  PD +TYS+++D
Sbjct: 205 IEEMALEMVKDGVELDNITYSTIITCAKRCNFYDKAIEWFERMYKTGLMPDEVTYSAILD 264

Query: 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
            Y +   VE    LY+RA    W+ D  AFS L K++G AG++DG   V +EMK++ VKP
Sbjct: 265 VYSKLRKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKP 324

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           N++ YN LL+ MGRA +P   ++++ EM + GL+PN  T  +L++ YG+AR+ +D L ++
Sbjct: 325 NVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWAKDALQLW 384

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
            EMK K   +   LYNTLL MCAD+G  +EA  +F DMK S  C+PD++++++M+ I   
Sbjct: 385 EEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCKPDNFSYTAMLNIYGS 444

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
            GK  +A  +F EMLEAG + N+   T L+QC GKA+R DD+V   +   + G+ PDDR 
Sbjct: 445 GGKAEKAMKLFEEMLEAGVQVNVMGCTCLVQCLGKAKRIDDLVYVFDLSIQRGVKPDDRL 504

Query: 484 CGCLLNVMTQ-TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 542
           CGCLL+VM      E+  K++ C+E++N KL   V L+++E+      K+E   + N+  
Sbjct: 505 CGCLLSVMALCESSEDAEKVMACLERANRKLVTFVNLIVDEKTEFETVKEEFKLVINATQ 564

Query: 543 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAA 602
            + ++ +CNCLID+C      E A +LL LG    +Y  + +++  +WSL ++SLS+GAA
Sbjct: 565 VEARRPFCNCLIDICRGKKRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAA 624

Query: 603 LTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSP 662
            TAL  W+  L+  ++  E+ P L    TG G H++S +GLA+ F  HL++L+APF  S 
Sbjct: 625 ETALEEWMRTLANIIKRQEDLPELFLAQTGTGTHRFS-QGLANSFALHLQQLSAPFRQS- 682

Query: 663 DKVGWFLTTEAAAKSWLESR 682
           D+ G F+ T+    SWLES+
Sbjct: 683 DRAGIFVATKEDLVSWLESK 702


>gi|449462001|ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
 gi|449521148|ref|XP_004167592.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
          Length = 710

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 252/664 (37%), Positives = 390/664 (58%), Gaps = 13/664 (1%)

Query: 37  SKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKL---KEK 93
           S  S+  ++ SL E   +  T    N      +  S PKS  WVNP  P+ S L   ++K
Sbjct: 50  SSQSVDNKNPSLSEQLKNLSTTTLSNAPNDETRLLSKPKS-TWVNPTKPKRSVLSLQRQK 108

Query: 94  ----SYDTRYNSLVKLAADLDSCSATEDDVF-SVLRCLGDDFLEQDCVIILNNMTNPDTA 148
               SY+ +   L   A  L++C +++D  F + L  +     +++ ++ILN++      
Sbjct: 109 RSSYSYNPKMRDLKSFAHKLNACDSSDDASFIAALEEIPHPPTKENALLILNSLRPWQKT 168

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
            L   +  ++     E I YNV MK  R  R     E L ++M+  G++ DN+T+ST+I+
Sbjct: 169 HLFFNWIKSQNLFPMETIFYNVAMKSLRYGRQFQLIEDLANEMISAGIELDNITYSTIIT 228

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           CA+  +  +KA+EWFERM   G  PD +TYS+++D Y   G VE    LY+R R   W  
Sbjct: 229 CAKKCSRFDKAMEWFERMYKTGLMPDEVTYSAILDVYANLGKVEEVLSLYERGRASGWTP 288

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           DP  FS L K++G AG++DG + V +EMK+I ++PN++ YN LLD MG+A +P   ++++
Sbjct: 289 DPYTFSVLGKMFGEAGDYDGIMYVLQEMKSIEMQPNLVVYNTLLDAMGKAGKPGFARSLF 348

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            EM ++G++PN  T  +L++ YG+AR+  D L ++  M+  G  +   LYNTLL MCAD+
Sbjct: 349 DEMVESGITPNEKTLTALVKIYGKARWARDALDLWERMRSNGWPMDFILYNTLLNMCADL 408

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G  +EA  +FE+MK S++ +PDSW++++M+ I    G V  +  +F EMLE G E N+  
Sbjct: 409 GLEEEAETLFEEMKKSKHSRPDSWSYTAMLNIYGSGGNVKRSMELFEEMLELGVEINVMC 468

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT-PKEELGKLVECVE 507
            T LIQC GK+ R DD+VR  N   + GI PDDR CGCLL+V++     E++ K+  C++
Sbjct: 469 CTCLIQCLGKSGRIDDLVRVFNVSVQKGIKPDDRLCGCLLSVLSLCYNSEDINKVFTCLQ 528

Query: 508 KSNSKLGYVVKLLLEEQDIEGD-FKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENA 566
           ++N KL   +  LL++ DI  +  K E   +    + + ++ +CNCLID+C N NL E A
Sbjct: 529 QANPKLVSFIN-LLQQNDITFEVVKNEFRNILGETAPEARRPFCNCLIDICRNQNLRERA 587

Query: 567 CKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPL 626
            +LL LG    +Y  + +++ T+W L ++SLS+GAA TAL  W+  LSK ++  E  P L
Sbjct: 588 HELLYLGSLYGLYPGLHNKTETEWCLDVRSLSVGAAQTALEEWMITLSKIVQREEALPEL 647

Query: 627 LGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSLV 686
           L   TG G H++S +GLA+ F SH+ +L APF    D+ GWF+ T     +W+ SR   V
Sbjct: 648 LSAQTGAGTHRFS-QGLANSFASHVDKLAAPFQLREDRAGWFVATREDLVTWVHSRVPSV 706

Query: 687 SVPA 690
           +  A
Sbjct: 707 AATA 710


>gi|219884651|gb|ACL52700.1| unknown [Zea mays]
          Length = 716

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/638 (37%), Positives = 355/638 (55%), Gaps = 39/638 (6%)

Query: 79  WVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDD--------- 129
           WVNP  P+ S L             + +   ++ S     +   LR L +D         
Sbjct: 85  WVNPTKPKPSVLS-------LRRHRRRSPPANTSSTPLQPLLRALRALPEDADLAGTLDA 137

Query: 130 -FLEQ----------DCVIILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVF 175
            FL+Q          D +++LN +      +L+L  +   L A     + I +NV +K  
Sbjct: 138 FFLQQQGQGAAPSPSDALLLLNYLHPSWRKSLSLLAWLRALPAGAFPLDTIFFNVALKSL 197

Query: 176 RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM-PSFGCDPD 234
           R  R    AERL  DMLD GV  DN+T+STLI+ AR      KAVEWFERM  + G  PD
Sbjct: 198 RAARQWPHAERLALDMLDAGVPLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPD 257

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
            +TYS+++D Y + G  E    L+DRAR   W+ D  AF+ L K++G AG++DG   V++
Sbjct: 258 EVTYSAVLDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFK 317

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           EM+ +G+KPN+  YN LL+ +G+  +P   + +++EM D G+ PN  T  +L + YGRAR
Sbjct: 318 EMREVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRAR 377

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC----QPD 410
           +G D L ++ +M+E  +     L NTLL+MCADVG   EA ++F +MK  E C    +PD
Sbjct: 378 WGRDALQLWDKMRELKLPADSILCNTLLSMCADVGLVAEAEQLFNEMKGPE-CRDVPKPD 436

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
            W++++MI I    G    A  +F EML+ G EPN+   T +IQC GKA+R    V  L 
Sbjct: 437 KWSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQQAVEVLE 496

Query: 471 RLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDF 530
              E G+ PDDR CGCLL+V+  +  EE+  ++  +EK N  L  ++++L + Q    D 
Sbjct: 497 SGLEKGLKPDDRLCGCLLSVIALSSGEEMEMVLSSLEKVNQNLVKLIRVLGDAQVGGDDI 556

Query: 531 KKEATELFNSISKDVKKAYCNCLIDLCVNLNL-LENACKLLELGLTLEVYTDIQSRSPTQ 589
            +E   + NS + +V++ YCNCLID+C N     + A ++  L  T  +Y+ +QSR   +
Sbjct: 557 TEELKSVLNSAAPEVRRPYCNCLIDVCRNHGFPPQRAREVFHLAQTYGLYSKLQSRKDEE 616

Query: 590 WSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFES 649
           WSL L+SLS+GAA TA   W+  +S+     ++ P    + TG   HK++ +GLAS F +
Sbjct: 617 WSLDLRSLSVGAAKTAFDDWMQTVSERWAQQKDLPESFSVYTGSSTHKFA-QGLASAFAA 675

Query: 650 HLKELNAPFHDSPDKVGWFLTTEAAAKSWLE-SRSSLV 686
           HL ++  PFH S  + G F+++     SWL+ SRSS V
Sbjct: 676 HLDQMAVPFHASESQAGSFISSRDDLVSWLQMSRSSAV 713


>gi|212274745|ref|NP_001130291.1| uncharacterized protein LOC100191385 [Zea mays]
 gi|194688762|gb|ACF78465.1| unknown [Zea mays]
 gi|223949231|gb|ACN28699.1| unknown [Zea mays]
 gi|414874010|tpg|DAA52567.1| TPA: salt-inducible protein [Zea mays]
          Length = 716

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/638 (37%), Positives = 355/638 (55%), Gaps = 39/638 (6%)

Query: 79  WVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDD--------- 129
           WVNP  P+ S L             + +   ++ S     +   LR L +D         
Sbjct: 85  WVNPTKPKPSVLS-------LRRHRRRSPPANTSSTPLQPLLRALRALPEDADLAGTLDA 137

Query: 130 -FLEQ----------DCVIILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVF 175
            FL+Q          D +++LN +      +L+L  +   L A     + I +NV +K  
Sbjct: 138 FFLQQQGQGAAPSPSDALLLLNYLHPSWRKSLSLLAWLRALPAGAFPLDTIFFNVALKSL 197

Query: 176 RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM-PSFGCDPD 234
           R  R    AERL  DMLD GV  DN+T+STLI+ AR      KAVEWFERM  + G  PD
Sbjct: 198 RAARQWPHAERLALDMLDAGVPLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPD 257

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
            +TYS+++D Y + G  E    L+DRAR   W+ D  AF+ L K++G AG++DG   V++
Sbjct: 258 EVTYSAVLDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFK 317

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           EM+ +G+KPN+  YN LL+ +G+  +P   + +++EM D G+ PN  T  +L + YGRAR
Sbjct: 318 EMREVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRAR 377

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC----QPD 410
           +G D L ++ +M+E  +     L NTLL+MCADVG   EA ++F +MK  E C    +PD
Sbjct: 378 WGRDALQLWDKMRELKLPADSILCNTLLSMCADVGLVAEAEQLFNEMKDPE-CRDVPKPD 436

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
            W++++MI I    G    A  +F EML+ G EPN+   T +IQC GKA+R    V  L 
Sbjct: 437 KWSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQQAVEVLE 496

Query: 471 RLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDF 530
              E G+ PDDR CGCLL+V+  +  EE+  ++  +EK N  L  ++++L + Q    D 
Sbjct: 497 SGLEKGLKPDDRLCGCLLSVIALSSGEEMEMVLSSLEKVNQNLVKLIRVLGDAQVGGDDI 556

Query: 531 KKEATELFNSISKDVKKAYCNCLIDLCVNLNL-LENACKLLELGLTLEVYTDIQSRSPTQ 589
            +E   + NS + +V++ YCNCLID+C N     + A ++  L  T  +Y+ +QSR   +
Sbjct: 557 TEELKSVLNSAAPEVRRPYCNCLIDVCRNHGFPPQRAREVFHLAQTYGLYSKLQSRKDEE 616

Query: 590 WSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFES 649
           WSL L+SLS+GAA TA   W+  +S+     ++ P    + TG   HK++ +GLAS F +
Sbjct: 617 WSLDLRSLSVGAAKTAFDDWMQTVSERWAQQKDLPESFSVYTGSSTHKFA-QGLASAFAA 675

Query: 650 HLKELNAPFHDSPDKVGWFLTTEAAAKSWLE-SRSSLV 686
           HL ++  PFH S  + G F+++     SWL+ SRSS V
Sbjct: 676 HLDQMAVPFHASESQAGSFISSRDDLVSWLQMSRSSAV 713


>gi|363543445|ref|NP_001241732.1| salt-inducible protein [Zea mays]
 gi|195610062|gb|ACG26861.1| salt-inducible protein [Zea mays]
          Length = 716

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/638 (37%), Positives = 353/638 (55%), Gaps = 39/638 (6%)

Query: 79  WVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDD--------- 129
           WVNP  P+ S L             + +   ++ S     +   LR L +D         
Sbjct: 85  WVNPTKPKPSVLS-------LRRHRRRSPPANTSSTPLQPLLRALRALPEDADLAGTLDA 137

Query: 130 -FLEQ----------DCVIILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVF 175
            FL+Q          D +++LN +      +L+L  +   L A     + I +NV +K  
Sbjct: 138 FFLQQQGQGAAPSPSDALLLLNYLHPSWRKSLSLLAWLRALPAGAFPLDTIFFNVALKSL 197

Query: 176 RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM-PSFGCDPD 234
           R  R    AERL  DMLD GV  DN+T+STLI+ AR      KAVEWFERM  + G  PD
Sbjct: 198 RAARQWPHAERLALDMLDAGVPLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPD 257

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
            +TYS+++D Y + G  E    L+DRAR   W+ D  AF+ L K++G AG++DG   V++
Sbjct: 258 EVTYSAVLDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFK 317

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           EM+ +G+KPN+  YN LL+ +G+  +P   + +++EM D G+ PN  T  +L + YGRAR
Sbjct: 318 EMREVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRAR 377

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC----QPD 410
           +G D L ++ +M+E  +     L NTLL+MCADVG   EA ++F +MK  E C    +PD
Sbjct: 378 WGRDALQLWDKMRELKLPADSILCNTLLSMCADVGLVAEAEQLFNEMKDPE-CRDVPKPD 436

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
            W++++MI I    G    A  +F EML+ G EPN+   T +IQC GKA R    V  L 
Sbjct: 437 KWSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKAHRIQQAVEVLE 496

Query: 471 RLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDF 530
              E G+ PDDR CGCLL+V+  +  EE+  ++  +EK N  L  ++++L + Q    D 
Sbjct: 497 SGLEKGLKPDDRLCGCLLSVIALSSGEEMEMVLSSLEKVNQNLVKLIRVLGDAQVGGYDI 556

Query: 531 KKEATELFNSISKDVKKAYCNCLIDLCVNLNL-LENACKLLELGLTLEVYTDIQSRSPTQ 589
            KE   + N  + +V++ YCNCLID+C N     + A ++  L  T  +Y+ +QSR   +
Sbjct: 557 TKELKSVLNGAAPEVRRPYCNCLIDVCRNHGFPPQRAREVFHLAQTYGLYSKLQSRKDEE 616

Query: 590 WSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFES 649
           WSL L+SLS+GAA TA   W+  +S+     ++ P    + TG   HK++ +GLAS F +
Sbjct: 617 WSLDLRSLSVGAAKTAFDDWMQTVSERWAQQKDLPESFSVYTGSSTHKFA-QGLASAFAA 675

Query: 650 HLKELNAPFHDSPDKVGWFLTTEAAAKSWLE-SRSSLV 686
           HL ++  PFH S  + G F+++     SWL+ SRSS V
Sbjct: 676 HLDQMAVPFHASESQAGSFISSRDDLVSWLQMSRSSAV 713


>gi|242037347|ref|XP_002466068.1| hypothetical protein SORBIDRAFT_01g000640 [Sorghum bicolor]
 gi|241919922|gb|EER93066.1| hypothetical protein SORBIDRAFT_01g000640 [Sorghum bicolor]
          Length = 722

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/641 (36%), Positives = 351/641 (54%), Gaps = 44/641 (6%)

Query: 79  WVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDD--------- 129
           WVNP  P+ S L    +  R  S        ++ SA    +   LR L +D         
Sbjct: 85  WVNPTRPKPSVLSLSRHRRRSPSA-------NASSAPLQPLLRALRALPEDADLAATLDA 137

Query: 130 -FL----------------EQDCVIILNNMTNPDTAALALTYFTNKLKASK---EVILYN 169
            FL                  D +++LN +       L+L  +   L A     + I +N
Sbjct: 138 FFLQQGGQGQGQGQGAAPSPSDALLLLNYLHPSWRKTLSLLAWLRALPAGAFQLDTIFFN 197

Query: 170 VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM-PS 228
           V +K  R  R    AERL  DMLD GV  DN+T+STLI+ AR      KAVEWFERM  +
Sbjct: 198 VALKSLRAARQWPHAERLALDMLDAGVPLDNITYSTLITAARRCRQFAKAVEWFERMYAA 257

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  PD +TYS+++D Y + G  E    L+DRAR   W+ D  AF+ L K++G AG+++G
Sbjct: 258 DGVLPDEVTYSAVLDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYEG 317

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
              V++EM  +G+KPN+  YN LL+ +G+  +P   + +++EM + G+ PN  T  +L +
Sbjct: 318 IQFVFKEMTEVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMVEQGVDPNARTLTALAK 377

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC- 407
            YGRAR+G D L ++ +M+E  +     L NTLL+MCADVG  +EA ++F +MK  E C 
Sbjct: 378 IYGRARWGRDALQLWDKMRELKLPADNILCNTLLSMCADVGLVNEAEQLFNEMKDPE-CR 436

Query: 408 ---QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              +PD W++++MI I    G    A  +F EML+ G EPN+   T +IQC GKAQR   
Sbjct: 437 DVPKPDKWSYTAMINIYGSNGDTDRALQLFGEMLKGGIEPNIMSYTIVIQCLGKAQRIQQ 496

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQ 524
            V  L    E G+ PDDR CGCLL+V+  +  EE+  ++  ++K N  L  ++++L + Q
Sbjct: 497 AVEVLEAGLEKGLKPDDRLCGCLLSVIALSSGEEMEIVLSSLQKFNQNLVKLIRVLSDAQ 556

Query: 525 DIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNL-LENACKLLELGLTLEVYTDIQ 583
               D  KE   + N+ + +V++ YCNCLID+C N     + A ++  L  T  +YT +Q
Sbjct: 557 VGADDITKELKSVLNAAAPEVRRPYCNCLIDVCRNHGFPPQRAREVFHLAQTYGLYTKLQ 616

Query: 584 SRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGL 643
           SR   +WSL L+SLS+GAA TA   W+  +S+     +  P    + TG   HK++ +GL
Sbjct: 617 SRKDEEWSLDLRSLSVGAAKTAFDDWMQTVSERWVQQKALPESFSVYTGSSTHKFA-QGL 675

Query: 644 ASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSS 684
           AS F +HL+++  PFH S  + G F+++     SWL+  SS
Sbjct: 676 ASAFAAHLEQMAVPFHASESQAGSFISSRDDLVSWLQMSSS 716


>gi|326518288|dbj|BAJ88173.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326527987|dbj|BAJ89045.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 706

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/656 (35%), Positives = 352/656 (53%), Gaps = 42/656 (6%)

Query: 53  SSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSC 112
           +  PT  +   Q P      +P+   WVNP  PR + L  +    R        A     
Sbjct: 56  TDKPTPAADRAQRP------TPEP-TWVNPSRPRPTVLSLRRQRRR-------PASSHPS 101

Query: 113 SATEDDVFSVLRCLGDDF-----------------LEQDCVIILNNMTNPDTAALALTYF 155
           SA    +   LR L +D                     D +++LN +       L+L  +
Sbjct: 102 SAPLQPLLRDLRALPEDADLAPTLHAFFPLPDSPPTSSDALLLLNYLHPSWRKTLSLLAY 161

Query: 156 TNKLKA----SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
              L A    + + IL+NV +K  R  R  D+AERL  DM+D GV  DN+T+STLI+ AR
Sbjct: 162 LRGLPADAGFAVDTILFNVALKSLRAARRWDEAERLALDMVDSGVPLDNITYSTLITAAR 221

Query: 212 MNNLPNKAVEWFERM--PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
                 KAVEWFERM  P     PD +TYS+++D Y +    E    L+DRAR   W+ D
Sbjct: 222 RCRQFAKAVEWFERMYSPGSAVLPDEVTYSAVLDVYAQLRMKEEVLALFDRARGSGWKPD 281

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
             AF+ L K++G AG++DG   V++EM+ +G KPN+  YN LL+ +G+  +P   + +++
Sbjct: 282 HVAFAVLAKMFGEAGDYDGIQFVFKEMREVGTKPNIFVYNALLEALGKTGKPGLARNLFE 341

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           EMT  G+ PN  T  ++ + YGRAR+G D L ++ +M+EK +     L NTLL+MCADVG
Sbjct: 342 EMTAEGVEPNARTLTAVAKIYGRARWGRDALQLWDQMREKKIPADSILCNTLLSMCADVG 401

Query: 390 YTDEAFEIFEDMKS---SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
              EA ++FE+MK    ++  QPD W++++MI I         A  +F EML++G E N+
Sbjct: 402 LVAEAEQLFEEMKDPDLTDVPQPDKWSYTAMINIYGSIKDADRALQLFVEMLQSGIEANI 461

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 506
              T +IQC GKA R  D V  L    E G+ PDDR CGCLL+V+  +  EE   ++ C+
Sbjct: 462 MSYTIVIQCLGKANRIRDAVEVLEAGLERGLKPDDRLCGCLLSVVALSTGEETELVLACL 521

Query: 507 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNL-LEN 565
           EK N  L  ++++L ++Q    + K++   + N+   DV++ YCNCLID+C N  L    
Sbjct: 522 EKFNRNLVKLIRMLGDDQVGADELKEQLKAVLNAAETDVRRPYCNCLIDICQNHGLPARR 581

Query: 566 ACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPP 625
             +L  L     +Y+ +  R   +W L L+SLS+GAA TA   W+  L +    G+  P 
Sbjct: 582 PRELFRLAQGYGLYSKLHIRKDDEWLLDLRSLSVGAAKTAFDDWMAALKERAVQGQTLPQ 641

Query: 626 LLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLES 681
              + TG   HK++ +GLAS F +HL+E  APF  S  +VG F+++      WL++
Sbjct: 642 SFNVFTGSSTHKFA-QGLASAFAAHLEEAAAPFRPSESQVGSFVSSRDELVLWLQT 696


>gi|326495542|dbj|BAJ85867.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 706

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/656 (35%), Positives = 352/656 (53%), Gaps = 42/656 (6%)

Query: 53  SSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSC 112
           +  PT  +   Q P      +P+   WVNP  PR + L  +    R        A     
Sbjct: 56  TDKPTPAADRAQRP------TPEP-TWVNPSRPRPTVLSLRRQRRR-------PASSHPS 101

Query: 113 SATEDDVFSVLRCLGDDF-----------------LEQDCVIILNNMTNPDTAALALTYF 155
           SA    +   LR L +D                     D +++LN +       L+L  +
Sbjct: 102 SAPLQPLLRDLRALPEDADLAPTLHAFFPLPDSPPTSSDALLLLNYLHPSWRKTLSLLAY 161

Query: 156 TNKLKA----SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
              L A    + + IL+NV +K  R  R  D+AERL  DM+D GV  DN+T+STLI+ AR
Sbjct: 162 LRGLPADAGFAVDTILFNVALKSLRAARRWDEAERLALDMVDSGVPLDNITYSTLITAAR 221

Query: 212 MNNLPNKAVEWFERM--PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
                 KAVEWFERM  P     PD +TYS+++D Y +    E    L+DRAR   W+ D
Sbjct: 222 RCRQFAKAVEWFERMYSPGSAVLPDEVTYSAVLDVYAQLRMKEEVLALFDRARGSGWKPD 281

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
             AF+ L K++G AG++DG   V++EM+ +G KPN+  YN LL+ +G+  +P   + +++
Sbjct: 282 HVAFAVLAKMFGEAGDYDGIQFVFKEMREVGTKPNIFVYNALLEALGKTGKPGLARNLFE 341

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           EMT  G+ PN  T  ++ + YGRAR+G D L ++ +M+EK +     L NTLL+MCADVG
Sbjct: 342 EMTAEGVEPNARTLTAVAKIYGRARWGRDALQLWDQMREKKIPADSILCNTLLSMCADVG 401

Query: 390 YTDEAFEIFEDMKS---SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
              EA ++FE+MK    ++  QPD W++++MI I         A  +F EML++G E N+
Sbjct: 402 LVAEAEQLFEEMKDPDLTDVPQPDKWSYTAMINIYGSIKDADRALQLFVEMLQSGIEANI 461

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 506
              T +IQC GKA R  D V  L    E G+ PDDR CGCLL+V+  +  EE   ++ C+
Sbjct: 462 MSYTIVIQCLGKANRIRDAVEMLEAGLERGLKPDDRLCGCLLSVVALSTGEETELVLACL 521

Query: 507 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNL-LEN 565
           EK N  L  ++++L ++Q    + K++   + N+   DV++ YCNCLID+C N  L    
Sbjct: 522 EKFNRNLVKLIRMLGDDQVGADELKEQLKAVLNAAETDVRRPYCNCLIDICQNHGLPARR 581

Query: 566 ACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPP 625
             +L  L     +Y+ +  R   +W L L+SLS+GAA TA   W+  L +    G+  P 
Sbjct: 582 PRELFRLAQGYGLYSKLHIRKDDEWLLDLRSLSVGAAKTAFDDWMAALKERAVQGQTLPQ 641

Query: 626 LLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLES 681
              + TG   HK++ +GLAS F +HL+E  APF  S  +VG F+++      WL++
Sbjct: 642 SFNVFTGSSTHKFA-QGLASAFAAHLEEAAAPFRPSESQVGSFVSSRDELVLWLQT 696


>gi|218194139|gb|EEC76566.1| hypothetical protein OsI_14394 [Oryza sativa Indica Group]
          Length = 701

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/654 (35%), Positives = 354/654 (54%), Gaps = 49/654 (7%)

Query: 55  NPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSA 114
            PT+H+  P               WVNP  P+ + L  + +  R  S    +  L +   
Sbjct: 67  TPTQHAPEP--------------TWVNPSKPKPTVLSLRRHRRRSPSSQPFSDPLQT--- 109

Query: 115 TEDDVFSVLRCLGD---------DFLE-------QDCVIILNNMTNPDTAALALTYFTNK 158
               V   +R L D         DF          D +++LN +      +L+L  +   
Sbjct: 110 ----VLRAIRALPDAADLAPTLHDFFPPASPPSTSDALLLLNYLHPSWRKSLSLLCWLRA 165

Query: 159 LKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
           L       + I++NV +K  R  R   +AERL  DML  GV  DN+T+STLI+ AR    
Sbjct: 166 LPDGAFPLDTIVFNVALKSLRAARQWPQAERLALDMLASGVPLDNITYSTLITAARRCRQ 225

Query: 216 PNKAVEWFERM-PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
            +KAVEWFERM  S G  PD +TYS+++D Y + G  E    L+DRAR   W+ D  AF+
Sbjct: 226 FDKAVEWFERMYASDGVLPDEVTYSAILDVYAQLGMKEEVLALFDRARGSGWKPDHVAFA 285

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            L K++G AG++DG   V++EM+ +G+KPN+  YN LL+ +G+  +P   + +++EMT  
Sbjct: 286 VLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMTAE 345

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G+ PN  T  +L + YGRAR+G D L ++ +M+EK +     L NTLL+MCADVG   EA
Sbjct: 346 GVEPNARTLTALAKIYGRARWGRDALQLWEQMREKKLPADNILCNTLLSMCADVGLVGEA 405

Query: 395 FEIFEDMKS---SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
            ++F +MK     +  +PD W++++MI I    G    A  +F EM+E+G EPN+   T 
Sbjct: 406 EQLFSEMKDPDLGDVPKPDKWSYTAMINIYGSSGDADRALQLFAEMVESGIEPNIMSYTI 465

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 511
           +IQC GKA R  + V  L      G+ PDDR CGCLL+V+  +  +E   ++ C+EK  S
Sbjct: 466 VIQCLGKAGRIQEAVDVLEAGMAKGLKPDDRLCGCLLSVVALSSGDETEVILACLEKVRS 525

Query: 512 KLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLL-ENACKLL 570
            L  ++++L + +    D + E   + NS + +V++ YCNCLID+C N     E A +L 
Sbjct: 526 NLVKLIRMLGDARVGVEDLRVELKGILNSAAPEVRRPYCNCLIDICRNHGYPSERAVELF 585

Query: 571 ELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGIN 630
            L     +Y+ I +R   +WSL L+SLS+GAA TA   W+  +    E  E  P    + 
Sbjct: 586 RLARHYGLYSKIHTRKEEEWSLDLRSLSVGAAKTAFDDWMKTIR---EHEEALPQTFSVY 642

Query: 631 TGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSS 684
           TG   HK++ +GLA+   SHL+++ APF  S  ++G F+++     SWL +  S
Sbjct: 643 TGSSTHKFA-QGLATAVASHLEQVGAPFRASDSQLGSFISSRDDLLSWLHTTMS 695


>gi|115456691|ref|NP_001051946.1| Os03g0856100 [Oryza sativa Japonica Group]
 gi|41393252|gb|AAS01975.1| putative chloroplastic RNA-binding protein, with alternative
           splicing isoforms [Oryza sativa Japonica Group]
 gi|113550417|dbj|BAF13860.1| Os03g0856100 [Oryza sativa Japonica Group]
 gi|222626198|gb|EEE60330.1| hypothetical protein OsJ_13428 [Oryza sativa Japonica Group]
          Length = 640

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/559 (38%), Positives = 327/559 (58%), Gaps = 10/559 (1%)

Query: 134 DCVIILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDD 190
           D +++LN +      +L+L  +   L       + I++NV +K  R  R   +AERL  D
Sbjct: 78  DALLLLNYLHPSWRKSLSLLCWLRALPDGAFPLDTIVFNVALKSLRAARQWPQAERLALD 137

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM-PSFGCDPDALTYSSMIDAYGRAG 249
           ML  GV  DN+T+STLI+ AR     +KAVEWFERM  S G  PD +TYS+++D Y + G
Sbjct: 138 MLASGVPLDNITYSTLITAARRCRQFDKAVEWFERMYASDGVLPDEVTYSAILDVYAQLG 197

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
             E    L+DRAR   W+ D  AF+ L K++G AG++DG   V++EM+ +G+KPN+  YN
Sbjct: 198 MKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYN 257

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            LL+ +G+  +P   + +++EMT  G+ PN  T  +L + YGRAR+G D L ++ +M+EK
Sbjct: 258 ALLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTALAKIYGRARWGRDALQLWEQMREK 317

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS---SENCQPDSWTFSSMITICSCRGK 426
            +     L NTLL+MCADVG   EA ++F +MK     +  +PD W++++MI I    G 
Sbjct: 318 KLPADNILCNTLLSMCADVGLVGEAEQLFSEMKDPDLGDVPKPDKWSYTAMINIYGSSGD 377

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
              A  +F EM+E+G EPN+   T +IQC GKA R  + V  L      G+ PDDR CGC
Sbjct: 378 ADRALQLFAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVLEAGMAKGLKPDDRLCGC 437

Query: 487 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 546
           LL+V+  +  +E   ++ C+EK  S L  ++++L + +    D + E   + NS + +V+
Sbjct: 438 LLSVVALSSGDETEVILACLEKVRSNLVKLIRMLGDARVGVEDLRVELKGILNSAAPEVR 497

Query: 547 KAYCNCLIDLCVNLNLL-ENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 605
           + YCNCLID+C N     E A +L  L     +Y+ I +R   +WSL L+SLS+GAA TA
Sbjct: 498 RPYCNCLIDICRNHGYPSERAVELFRLARHYGLYSKIHTRKEEEWSLDLRSLSVGAAKTA 557

Query: 606 LHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKV 665
              W+  + +  E  E  P    + TG   HK++ +GLA+   SHL+++ APF  S  ++
Sbjct: 558 FDDWMKTIREH-EEEEALPQTFSVYTGSSTHKFA-QGLATAVASHLEQVGAPFRASDSQL 615

Query: 666 GWFLTTEAAAKSWLESRSS 684
           G F+++     SWL +  S
Sbjct: 616 GSFISSRDDLLSWLHTTMS 634


>gi|255557625|ref|XP_002519842.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540888|gb|EEF42446.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/625 (36%), Positives = 351/625 (56%), Gaps = 55/625 (8%)

Query: 72  SSPKSYIWVNPKSPRASKL---KEKSYDTRYNSLVK----LAADLDSCSATEDDVFSVLR 124
           S P S  WVNP  P+ S L   ++K      N  VK     A  L+ C +TE    S+L 
Sbjct: 98  SKPNS-TWVNPTKPKRSVLSLQRQKRSPYSLNPKVKELRLFAQKLNDCDSTESSFLSLLE 156

Query: 125 CLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKA 184
            +      ++ ++ILN++     A L   +   +     E I YNVTMK  R  R  +  
Sbjct: 157 QIPYPLTRENALLILNSLRPWQKAHLFFNWIKTQNSFPVETIFYNVTMKSLRFGRQFELI 216

Query: 185 ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244
           ++L ++M+   ++ DN+T+ST+I+CA+  N  + A+EWFERM   G  PD +TYS+++D 
Sbjct: 217 DKLANEMVSNEIELDNITYSTIITCAKRCNRFDMALEWFERMYKTGLMPDEVTYSAILDV 276

Query: 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
           Y + G VE    LY+R     W+ DP  FS L K++G AG++DG   V +EMK++ V+PN
Sbjct: 277 YAKLGRVEEVLSLYERGVASGWKPDPITFSVLAKMFGEAGDYDGIRYVLQEMKSLAVQPN 336

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           ++ YN LL+ MG+A +P   ++++ EM ++GL+PN  T  +L + YG+AR+ +D + ++ 
Sbjct: 337 VVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPNEKTLTALAKIYGKARWAKDAMELWE 396

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
            M+     +   LYNTLL+MCAD+G   EA  +FEDMK SE+C        S I      
Sbjct: 397 RMRSNDWPMDFILYNTLLSMCADLGMEKEAETLFEDMKRSEHC--------SQI------ 442

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
                                         C GKA R DD+VR  N   E G+ PDDR C
Sbjct: 443 ------------------------------CLGKANRVDDLVRVFNFSMERGVNPDDRLC 472

Query: 485 GCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543
           GCLL+V++   + E++ K++ C++ +N KL  +VKL+ EE+      K+E   + +  + 
Sbjct: 473 GCLLSVVSLCEESEDVDKVLACLQVANPKLVALVKLIAEEESSFETVKEEFKAIVSDTAV 532

Query: 544 DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAAL 603
           + ++ +CNCLID+C N NL   A +LL LG    +Y D+ +++  +WSL ++SLS+GAA 
Sbjct: 533 EARRPFCNCLIDVCRNRNLHGRAHELLYLGSLYGLYPDLHNKTEDEWSLDVRSLSVGAAH 592

Query: 604 TALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPD 663
           TAL  W+  L K ++  E  P +   +TG G HK+S +GLA+ F SH+++L APF  S +
Sbjct: 593 TALEEWMGTLVKFVQRNEALPEIFSAHTGTGTHKFS-QGLANAFASHVEKLAAPFRQSEE 651

Query: 664 KVGWFLTTEAAAKSWLESRS-SLVS 687
           K G F+ T     +W +SRS SL++
Sbjct: 652 KAGCFVATREDLVTWAQSRSPSLIT 676


>gi|41393251|gb|AAS01974.1| putative chloroplastic RNA-binding protein, with alternative
           splicing isoforms [Oryza sativa Japonica Group]
 gi|108712189|gb|ABF99984.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 884

 Score =  404 bits (1038), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/659 (35%), Positives = 355/659 (53%), Gaps = 57/659 (8%)

Query: 55  NPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSA 114
            PT+H+  P               WVNP  P+ + L  + +  R  S    +A L     
Sbjct: 64  TPTQHAPEPT--------------WVNPSKPKPTVLSLRRHRRRSPSSHPSSAPLQP--- 106

Query: 115 TEDDVFSVLRCLGD---------DFLE-------QDCVIILNNMTNPDTAALALTYFTNK 158
               +   +R L D         DF          D +++LN +      +L+L  +   
Sbjct: 107 ----LLRAIRALPDAADLAPTLHDFFPPASPPSTSDALLLLNYLHPSWRKSLSLLCWLRA 162

Query: 159 LKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
           L       + I++NV +K  R  R   +AERL  DML  GV  DN+T+STLI+ AR    
Sbjct: 163 LPDGAFPLDTIVFNVALKSLRAARQWPQAERLALDMLASGVPLDNITYSTLITAARRCRQ 222

Query: 216 PNKAVEWFERM-PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
            +KAVEWFERM  S G  PD +TYS+++D Y + G  E    L+DRAR   W+ D  AF+
Sbjct: 223 FDKAVEWFERMYASDGVLPDEVTYSAILDVYAQLGMKEEVLALFDRARGSGWKPDHVAFA 282

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            L K++G AG++DG   V++EM+ +G+KPN+  YN LL+ +G+  +P   + +++EMT  
Sbjct: 283 VLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMTAE 342

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G+ PN  T  +L + YGRAR+G D L ++ +M+EK +     L NTLL+MCADVG   EA
Sbjct: 343 GVEPNARTLTALAKIYGRARWGRDALQLWEQMREKKLPADNILCNTLLSMCADVGLVGEA 402

Query: 395 FEIFEDMKS---SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
            ++F +MK     +  +PD W++++MI I    G    A  +F EM+E+G EPN+   T 
Sbjct: 403 EQLFSEMKDPDLGDVPKPDKWSYTAMINIYGSSGDADRALQLFAEMVESGIEPNIMSYTI 462

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 511
           +IQC GKA R  + V  L      G+ PDDR CGCLL+V+  +  +E   ++ C+EK  S
Sbjct: 463 VIQCLGKAGRIQEAVDVLEAGMAKGLKPDDRLCGCLLSVVALSSGDETEVILACLEKVRS 522

Query: 512 KLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLL-ENACKLL 570
            L  ++++L + +    D + E   + NS + +V++ YCNCLID+C N     E A +L 
Sbjct: 523 NLVKLIRMLGDARVGVEDLRVELKGILNSAAPEVRRPYCNCLIDICRNHGYPSERAVELF 582

Query: 571 ELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGIN 630
            L     +Y+ I +R   +WSL L+SLS+GAA TA   W+  + +  E  E  P    + 
Sbjct: 583 RLARHYGLYSKIHTRKEEEWSLDLRSLSVGAAKTAFDDWMKTIREH-EEEEALPQTFSVY 641

Query: 631 TGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSLVSVP 689
           TG   HK++ +GLA+   SHL+++ APF  S  ++G F++          SR  L+S P
Sbjct: 642 TGSSTHKFA-QGLATAVASHLEQVGAPFRASDSQLGSFIS----------SRDDLLSCP 689


>gi|224031359|gb|ACN34755.1| unknown [Zea mays]
          Length = 504

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/503 (40%), Positives = 304/503 (60%), Gaps = 9/503 (1%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM-PSFGCDPDALTYSSMIDAYGRAG 249
           MLD GV  DN+T+STLI+ AR      KAVEWFERM  + G  PD +TYS+++D Y + G
Sbjct: 1   MLDAGVPLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVYAQLG 60

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
             E    L+DRAR   W+ D  AF+ L K++G AG++DG   V++EM+ +G+KPN+  YN
Sbjct: 61  MKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYN 120

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            LL+ +G+  +P   + +++EM D G+ PN  T  +L + YGRAR+G D L ++ +M+E 
Sbjct: 121 ALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMREL 180

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC----QPDSWTFSSMITICSCRG 425
            +     L NTLL+MCADVG   EA ++F +MK  E C    +PD W++++MI I    G
Sbjct: 181 KLPADSILCNTLLSMCADVGLVAEAEQLFNEMKDPE-CRDVPKPDKWSYTAMINIYGSNG 239

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 485
               A  +F EML+ G EPN+   T +IQC GKA+R    V  L    E G+ PDDR CG
Sbjct: 240 DTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQQAVEVLESGLEKGLKPDDRLCG 299

Query: 486 CLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 545
           CLL+V+  +  EE+  ++  +EK N  L  ++++L + Q    D  +E   + NS + +V
Sbjct: 300 CLLSVIALSSGEEMEMVLSSLEKVNQNLVKLIRVLGDAQVGGDDITEELKSVLNSAAPEV 359

Query: 546 KKAYCNCLIDLCVNLNL-LENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 604
           ++ YCNCLID+C N     + A ++  L  T  +Y+ +QSR   +WSL L+SLS+GAA T
Sbjct: 360 RRPYCNCLIDVCRNHGFPPQRAREVFHLAQTYGLYSKLQSRKDEEWSLDLRSLSVGAAKT 419

Query: 605 ALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 664
           A   W+  +S+     ++ P    + TG   HK++ +GLAS F +HL ++  PFH S  +
Sbjct: 420 AFDDWMQTVSERWAQQKDLPESFSVYTGSSTHKFA-QGLASAFAAHLDQMAVPFHASESQ 478

Query: 665 VGWFLTTEAAAKSWLE-SRSSLV 686
            G F+++     SWL+ SRSS V
Sbjct: 479 AGSFISSRDDLVSWLQMSRSSAV 501



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 148/334 (44%), Gaps = 19/334 (5%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y+  + V+ +    ++   LFD     G KPD+V F+ L          +     F+ 
Sbjct: 47  VTYSAVLDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKE 106

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTA 283
           M   G  P+   Y+++++A G+ G   +A  L++   ++   ++PNA   + L K+YG A
Sbjct: 107 MREVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMIDQG--VEPNARTLTALAKIYGRA 164

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD----NGLSPN 339
                 L ++++M+ + +  + I  N LL          + + ++ EM D    +   P+
Sbjct: 165 RWGRDALQLWDKMRELKLPADSILCNTLLSMCADVGLVAEAEQLFNEMKDPECRDVPKPD 224

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             +Y +++  YG     +  L ++ EM + G++ ++  Y  ++          +A E+ E
Sbjct: 225 KWSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQQAVEVLE 284

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
                +  +PD      ++++ +    +S  E M  EM+ +  E     L  LI+  G A
Sbjct: 285 S-GLEKGLKPDDRLCGCLLSVIA----LSSGEEM--EMVLSSLEKVNQNLVKLIRVLGDA 337

Query: 460 Q-RTDDVVRALNRLPELGITPDDR--FCGCLLNV 490
           Q   DD+   L  +      P+ R  +C CL++V
Sbjct: 338 QVGGDDITEELKSVLN-SAAPEVRRPYCNCLIDV 370



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 91/179 (50%), Gaps = 4/179 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           + +YN  ++   K      A  LF++M+D+GV+P+  T + L            A++ ++
Sbjct: 116 IFVYNALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGRDALQLWD 175

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN----AFSTLIKLY 280
           +M       D++  ++++      G V  A  L++  ++ + R  P     +++ +I +Y
Sbjct: 176 KMRELKLPADSILCNTLLSMCADVGLVAEAEQLFNEMKDPECRDVPKPDKWSYTAMINIY 235

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           G+ G+ D  L ++ EM   G++PN+++Y  ++  +G+A+R  Q   + +   + GL P+
Sbjct: 236 GSNGDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQQAVEVLESGLEKGLKPD 294


>gi|357114648|ref|XP_003559110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Brachypodium distachyon]
          Length = 875

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/623 (36%), Positives = 342/623 (54%), Gaps = 21/623 (3%)

Query: 79  WVNPKSPRASKLKEKSYDTRYNSLVKLAADL-----DSCSATED-DVFSVLRCL----GD 128
           WVNP  PR + L    +  R  S    +A L     D  +  ED DV   LR      G 
Sbjct: 72  WVNPSKPRPTVLSLSRHRRRPASSHPSSAPLQPLIRDLRALPEDADVAPTLRAFFPDDGG 131

Query: 129 DFLEQDCVIILNNMTNPDTAALALTYFTNKLKA---SKEVILYNVTMKVFRKCRDLDKAE 185
                D +++LN +      +L+L  +   L A   + + I +NV +K  R  R   + E
Sbjct: 132 PPSSSDALLLLNYLHPSWRKSLSLLSYLRSLPADAFAVDTIFFNVALKSLRAARRWAECE 191

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCD---PDALTYSSMI 242
           RL  DM+  GV  DN+T+STLI+ AR      KAVEWFERM S G     PD +TYS+++
Sbjct: 192 RLALDMVASGVPLDNITYSTLITAARRCRQFAKAVEWFERMYSPGGGGVLPDEVTYSAVL 251

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
           D Y +    E    L+DRAR   W+ D  AF+ L K++G AG++DG   V+ EM+ +G+K
Sbjct: 252 DVYAQLRMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFREMREVGIK 311

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           PN+  YN LL+ +G+  +P   +++++EMT  G+ PN  T  ++ + YGRAR+G D L +
Sbjct: 312 PNIFVYNALLEALGKTGKPGLARSLFEEMTAEGVEPNARTLTAVAKIYGRARWGRDALQL 371

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS---SENCQPDSWTFSSMIT 419
           + +M++K +     L NTLL+MCADVG   EA ++FE+MK    S+  +PD W++++MI 
Sbjct: 372 WEQMRQKKIPADSILCNTLLSMCADVGLVAEAEQLFEEMKDPELSDVPKPDKWSYTAMIN 431

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           I         A  +F EML  G EPN+   T +IQC GK  R  D    L    E G+ P
Sbjct: 432 IYGSIKDADRALQLFAEMLAEGIEPNIMSYTIVIQCLGKTNRIQDAAEVLEAGLERGLKP 491

Query: 480 DDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 539
           DDR CGCLL+V+  +  +E   ++ C+EK N  L  +++LL + Q    + K+E   + N
Sbjct: 492 DDRLCGCLLSVVALSSGDETELMLACLEKVNRNLVKLIRLLGDAQVGVDELKEELKAVLN 551

Query: 540 SISKDVKKAYCNCLIDLCVNLNL-LENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLS 598
           +   +V++ YCNCLID+C N       + +L  L     +Y+ +  R   +W L L+SLS
Sbjct: 552 AADSEVRRPYCNCLIDICQNHGFPAHRSGELFHLAQHYGLYSKLHIRKDEEWLLDLRSLS 611

Query: 599 LGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPF 658
           +GAA TA   W+  +S+    G+  P    + TG   HK++ +GLAS F  HL+E   PF
Sbjct: 612 VGAAKTAFDDWMKTISERSAQGKPLPEFFNVFTGSSTHKFA-QGLASAFAVHLEETAVPF 670

Query: 659 HDSPDKVGWFLTTEAAAKSWLES 681
             S  +VG F+++     SWL++
Sbjct: 671 RPSESQVGSFVSSRDDLVSWLQT 693


>gi|224089785|ref|XP_002308813.1| predicted protein [Populus trichocarpa]
 gi|222854789|gb|EEE92336.1| predicted protein [Populus trichocarpa]
          Length = 270

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/244 (70%), Positives = 202/244 (82%), Gaps = 1/244 (0%)

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
            AR  +WR+D   FSTLI++Y  AGNFDG LNV EEMKA+GVKPN++ YN LLD MGRAK
Sbjct: 4   HARTGEWRLDATTFSTLIRIYKVAGNFDGYLNVSEEMKALGVKPNLVIYNILLDAMGRAK 63

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
           RPWQVK  Y+++ DNGLSP++ T+A+LL AYGRARYG+D   +YREMKEKG+ L+V LYN
Sbjct: 64  RPWQVKKFYQDIIDNGLSPSFVTFAALLHAYGRARYGDDAFKIYREMKEKGLGLNVVLYN 123

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
           ++LAMCAD+G+ D+A EIFEDMKSS   +PDSWTFSSMITI SC GKVSE E   NEM E
Sbjct: 124 SILAMCADLGHVDKAVEIFEDMKSS-GIKPDSWTFSSMITIFSCCGKVSEVENTLNEMFE 182

Query: 440 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 499
           AGF+PN+F+LTSLIQCYGKAQR DDVV+  NR+ EL ITPDDRFCGCLLNVMTQTP EEL
Sbjct: 183 AGFQPNIFILTSLIQCYGKAQRIDDVVKTFNRIFELVITPDDRFCGCLLNVMTQTPNEEL 242

Query: 500 GKLV 503
            KLV
Sbjct: 243 SKLV 246



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 106/201 (52%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           ++  +++++   + D    + ++M   GVKP+ V ++ L+        P +  ++++ + 
Sbjct: 17  FSTLIRIYKVAGNFDGYLNVSEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDII 76

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P  +T+++++ AYGRA   + AF +Y   + +   ++   +++++ +    G+ D
Sbjct: 77  DNGLSPSFVTFAALLHAYGRARYGDDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVD 136

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + ++E+MK+ G+KP+  T+++++       +  +V+    EM + G  PN     SL+
Sbjct: 137 KAVEIFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEVENTLNEMFEAGFQPNIFILTSLI 196

Query: 348 RAYGRARYGEDTLSVYREMKE 368
           + YG+A+  +D +  +  + E
Sbjct: 197 QCYGKAQRIDDVVKTFNRIFE 217



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/181 (19%), Positives = 84/181 (46%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           L     +++YN+ +    + +   + ++ + D++D G+ P  VTF+ L+         + 
Sbjct: 43  LGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTFAALLHAYGRARYGDD 102

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A + +  M   G   + + Y+S++      G+V+ A  +++  ++   + D   FS++I 
Sbjct: 103 AFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSSGIKPDSWTFSSMIT 162

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
           ++   G      N   EM   G +PN+    +L+   G+A+R   V   +  + +  ++P
Sbjct: 163 IFSCCGKVSEVENTLNEMFEAGFQPNIFILTSLIQCYGKAQRIDDVVKTFNRIFELVITP 222

Query: 339 N 339
           +
Sbjct: 223 D 223


>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score =  369 bits (948), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 191/552 (34%), Positives = 314/552 (56%), Gaps = 4/552 (0%)

Query: 134 DCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           D V ILN++ +   A L   +   +  +S  +  YNV +KV R+ R  + ++++ +DM +
Sbjct: 12  DVVAILNSLKSWRQALLLFRWLRAEHSSSLNIYTYNVMLKVLRRGRQWEFSQQIAEDMAN 71

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
             V+PDN+T+STLISCA   N  + A+ WF+RM   GC PD +TYS+MID YG+ G  + 
Sbjct: 72  ADVRPDNITYSTLISCANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDE 131

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  LY+R +   W+ D   + T+++L+G AG     ++++EEMK  GV+P+ I YN ++ 
Sbjct: 132 AIALYERVKQAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIA 191

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
            +GRA R      +++EM   G+ PN  T ++++  Y R     + L V++ +++ G+  
Sbjct: 192 CLGRAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRLRQ-GVAC 250

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
            V +YN +L MC + G   EA +   +M  S + QP+ WT+ +MI++ + +G   EA   
Sbjct: 251 DVIVYNAVLKMCREAGLASEAEQYLREMTESGH-QPNDWTYRNMISVYAKKGMAVEAHRT 309

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           F++M+EAG++ ++   TSL+Q YG A+  + V   L+ +  +   PD+R C  +LN++  
Sbjct: 310 FSQMVEAGYQIDVMAYTSLLQAYGNAKEYNKVQEILDEMTSVNCAPDERLCCVILNLLDS 369

Query: 494 T-PKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNC 552
               EELG L  C+   +S +  +V  + EE  +  + + E   L + I+++  K  CN 
Sbjct: 370 CDTDEELGILRSCLRMCSSTMDTIVGQIFEENLVLRELRGELQSLLSDITEEAHKPICNS 429

Query: 553 LIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWIND 612
           L+ L  +     ++ +LL L   L VYT +Q++SPT WSLHL+SLS GAA  AL  W++ 
Sbjct: 430 LMQLSWHKGDRNHSFQLLSLFRVLGVYTGLQTKSPTMWSLHLRSLSTGAAHCALLSWLSS 489

Query: 613 LSKALESGEEFPPLLGINTGHGKHKYSDK-GLASVFESHLKELNAPFHDSPDKVGWFLTT 671
           +  A++ G+E P  + I TG G    +D+  L  V  S LKE ++PF +  D+  W   +
Sbjct: 490 VRYAIKEGQELPGRIIIETGVGNQLNADEFRLIVVISSLLKECSSPFKECADRKDWLEAS 549

Query: 672 EAAAKSWLESRS 683
                 WLES S
Sbjct: 550 GVDVTQWLESTS 561


>gi|255563768|ref|XP_002522885.1| ATP binding protein, putative [Ricinus communis]
 gi|223537870|gb|EEF39485.1| ATP binding protein, putative [Ricinus communis]
          Length = 427

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 171/245 (69%), Positives = 202/245 (82%), Gaps = 2/245 (0%)

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRL--PELGITPDDRFCGCLLNVMTQTPKEEL 499
           F+  + +    I+ + K +  D   +  + +   E GITPD+RFCGCLLNV+TQTPK+EL
Sbjct: 177 FDKEVILYNVTIKVFRKCRDLDRAEKLFDEMLERESGITPDERFCGCLLNVLTQTPKKEL 236

Query: 500 GKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVN 559
            KL EC+E +N+KLG+VVKLL+ +   E +FKKEA ELF+S   DVKKAYCNCLIDLCVN
Sbjct: 237 DKLAECIETANTKLGFVVKLLITDAATEANFKKEAAELFDSTGADVKKAYCNCLIDLCVN 296

Query: 560 LNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALES 619
           LNLLE AC+LL+LG+ LE+Y DIQSRS TQWSLHLKSLSLGAALTALH+WINDLSKALES
Sbjct: 297 LNLLERACELLDLGIKLEIYADIQSRSSTQWSLHLKSLSLGAALTALHVWINDLSKALES 356

Query: 620 GEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWL 679
           G+E PPLLGINTGHGKHKYSDKGLA VFESHLKELNAPFH++ DKVGWFLTT+ AA+SWL
Sbjct: 357 GDELPPLLGINTGHGKHKYSDKGLADVFESHLKELNAPFHEATDKVGWFLTTKVAAESWL 416

Query: 680 ESRSS 684
           ESR +
Sbjct: 417 ESRKA 421



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 114/217 (52%), Positives = 140/217 (64%), Gaps = 18/217 (8%)

Query: 1   MASNLCYSTCSLFS--------------TPKLGRRTFTFSFQRDDSLSFYSK-TSLQKRS 45
           MA NLC S  SLF               +    R        R  ++ F S+  SL    
Sbjct: 1   MAYNLCSSPSSLFQPLCNSLSSSSSSSSSSSSLREPHNPRNFRVTTVPFLSRRASLHITH 60

Query: 46  VSLQETQSSNPTKHSQ-NPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVK 104
           VSLQ+  +  PT+    N QYP GK GSS KSYIWVNPKSPRAS+LKEKSYD RY  L+K
Sbjct: 61  VSLQDPITQEPTQQEHANLQYPDGKKGSSSKSYIWVNPKSPRASQLKEKSYDARYAFLLK 120

Query: 105 LAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKE 164
           ++  L+SC+  E+DV SVL  LGD  L QD V+++NNM+N +TA LAL YF  +LK  KE
Sbjct: 121 VSESLNSCNPIEEDVCSVLDGLGDKILNQDAVVVINNMSNAETALLALKYFLERLKFDKE 180

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDR--GVKPD 199
           VILYNVT+KVFRKCRDLD+AE+LFD+ML+R  G+ PD
Sbjct: 181 VILYNVTIKVFRKCRDLDRAEKLFDEMLERESGITPD 217


>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 173/550 (31%), Positives = 298/550 (54%), Gaps = 4/550 (0%)

Query: 134 DCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           D V ILN + +   A     +   +   +  +  YNV +KV R+ +  + ++++ +DM++
Sbjct: 12  DVVAILNTLKSWKVALSLFKWLQAEQNFNLNIYTYNVMLKVLRRGQQWELSQQIAEDMIN 71

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
            G++PDN+T+STLISCA   N  + A+ WF+RM    C PDA+TYS+MID YG+ G  + 
Sbjct: 72  AGIRPDNITYSTLISCANRCNYQDAAMAWFDRMHDAQCVPDAVTYSTMIDVYGKVGKYDE 131

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  LY+  +   W+ D   + T+++L+G AG     +++++EMK  G++P  + YN ++ 
Sbjct: 132 AVALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYNIMIS 191

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
            +GRA R      +++EM   G+ PN  T ++++  Y R+    + L ++  M++  +  
Sbjct: 192 CLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGKVMEGLGIFHHMRQD-LAC 250

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
            + +YN ++ MC + G   EA +   +M    + QP+ WT+ +MI++ +  G   EA+ M
Sbjct: 251 DIIVYNAVIKMCREAGLVPEAEQYLREMVEYGH-QPNDWTYRNMISLYAKNGMAVEAQRM 309

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           F++++EAG++P++   TSL+Q YG A+  + V   L+ +      PD+R    +LN++  
Sbjct: 310 FSQLVEAGYQPDVMSYTSLLQGYGNAKDYEKVQEILHEMVSANCAPDERLWCVILNLLDA 369

Query: 494 TPKE-ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNC 552
              + E   L  C+   N  +  +V  + EE  +          L + ++++  K  CN 
Sbjct: 370 CDTDVEFEILRSCLRMCNPTMDNIVGHIFEENLVLKKLGDGLQSLLSDMAEEAHKPICNS 429

Query: 553 LIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWIND 612
           L+ L  +      A KLL L  +  VYT +Q++S   WSLHLKSLS GAA  AL  W++ 
Sbjct: 430 LLQLIWHKGDRNYAFKLLSLFCSSGVYTGLQTKSSIMWSLHLKSLSTGAAHCALLSWLSS 489

Query: 613 LSKALESGEEFPPLLGINTGHGKHKYSDK-GLASVFESHLKELNAPFHDSPDKVGWFLTT 671
           +  A++ G+E P    I TG G    +D+  L  V  S LKE  +PF +  D+  W   +
Sbjct: 490 VRYAIQEGQELPSRFMIETGVGNQLNADELRLVVVISSLLKEFTSPFIECVDRKDWLEAS 549

Query: 672 EAAAKSWLES 681
               + WLE+
Sbjct: 550 GVDVRQWLET 559


>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
 gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
          Length = 669

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 178/563 (31%), Positives = 316/563 (56%), Gaps = 16/563 (2%)

Query: 133 QDCVIILNNMTNPDTAALALTYFTNKLKASKEVI-----LYNVTMKVFRKCRDLDKAERL 187
           ++ V +LNN+   + A   L +F   LKA  E+       YNV +K+ R  R L+ +E+L
Sbjct: 110 KNIVTVLNNINRWEKA---LAFF-EWLKARPELYEINRYTYNVMLKILRNGRQLELSEKL 165

Query: 188 FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
            ++M  RG++PDN TFSTLI+CA+    P +A++WFERM S G  PD +TY+S+ID YGR
Sbjct: 166 VEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGR 225

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
            G V  A  LY++ ++  W++D   +  +  +Y  AG++   + + +EM+  G  PN + 
Sbjct: 226 VGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIMQLVQEMRDSGSSPNAVI 285

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
            N L+ T+ +A +  Q K ++ EM  +G+SP   T + L+  Y R    +    VY  +K
Sbjct: 286 MNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLK 345

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
            +G +  V +YN+L+  C + G  ++A +I ++MK +  C PD  T+ + +   + +G V
Sbjct: 346 TEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRA-GCNPDHLTYRTAMNTYATKGMV 404

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG-ITPDDRFCGC 486
             A  MF++++    +P+  + T +I+    A   +   +  + + E G  +PD+R  G 
Sbjct: 405 DPARRMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPDERVSGM 464

Query: 487 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-DFKKEATELFNS--IS 542
           LL+ M      +E   +++C++K N+ L  ++  ++ +++    D   E  E F S    
Sbjct: 465 LLSCMAMAKSDDERLAILDCLDKFNAPLHELMSAIVRKEEPRSRDEVAEMVEKFISDYPE 524

Query: 543 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAA 602
            D +K  CNCLID+C ++ +   A K+  +G+ +  Y  +Q+  P+ W L+L++LS+ AA
Sbjct: 525 TDSRKPLCNCLIDICSSVGMKHAAHKIFAMGVAVGAYDGLQTNLPSLWRLNLRTLSMPAA 584

Query: 603 LTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSP 662
             A+  W++ L  A+  G+E P  L I TG G+ + S + L  +  + LK+L APF ++ 
Sbjct: 585 ECAIEAWVSSLKAAVREGDELPEDLIIETGVGRVR-SGQRLNPIVGTLLKKLGAPFTENT 643

Query: 663 DKVGWFLTTEAAAKSWLESRSSL 685
           +  G++ +T AA ++W+++R +L
Sbjct: 644 EPAGYYCSTGAAVEAWIKARIAL 666


>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
 gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
          Length = 674

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 183/592 (30%), Positives = 325/592 (54%), Gaps = 26/592 (4%)

Query: 114 ATEDDVFSVLRCLGD----------DFLEQDCVIILNNMTNPDTAALALTYFTNKLKASK 163
           A  D+V  +L+  G+              ++ V +LNN+   + A   L +F   LKA  
Sbjct: 81  ARVDEVLKILQKTGNVEAALESWDKSLSAKNIVTVLNNINRWEKA---LAFF-EWLKARP 136

Query: 164 EVI-----LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           E+       YNV +K+ R  R L+ +E+L ++M  RG++PDN TFSTLI+CA+    P +
Sbjct: 137 ELYEINRYTYNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEE 196

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A++WFERM S G  PD +TY+S+ID YGR G V  A  LY++ ++  W++D   +  +  
Sbjct: 197 ALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIAN 256

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
           +Y  AG++   + + +EM+  G  PN +  N L+ T+ +A +  Q K ++ EM  +G+SP
Sbjct: 257 VYARAGDYQSIIQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSP 316

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
              T + L+  Y R    +    VY  +K +G +  V +YN+L+  C + G  ++A +I 
Sbjct: 317 TPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDIL 376

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           ++MK +  C PD  T+ + +   + +G V  A  MF++++    +P+  + T +I+    
Sbjct: 377 KEMKRA-GCNPDHLTYRTAMNTYATKGMVDPARRMFDKVVALNGKPDTPLFTVMIRACKL 435

Query: 459 AQRTDDVVRALNRLPELG-ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 516
           A   +   +  + + E G  +PD+R  G LL+ M      +E   +++C++K N+ L  +
Sbjct: 436 AGEIEQASKIFDEMMESGCCSPDERVSGMLLSCMAMAKNDDERLAILDCLDKFNAPLHEL 495

Query: 517 VKLLLEEQDIEG-DFKKEATELFNS--ISKDVKKAYCNCLIDLCVNLNLLENACKLLELG 573
           +  ++ +++    D   E  E F S     D +K  CNCLID+C ++ +   A K+  +G
Sbjct: 496 MSAIVRKEEPRSRDEVAEMVEKFISDYPETDSRKPLCNCLIDICSSVGMKHAAHKIFAMG 555

Query: 574 LTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGH 633
           + +  Y  +Q+  P+ W L+L++LS+ AA  A+  W++ L  A+  G+E P  L I TG 
Sbjct: 556 VAVGAYDGLQTNLPSLWRLNLRTLSMPAAECAIEAWVSSLKAAVREGDELPEDLIIETGV 615

Query: 634 GKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSL 685
           G+ + S + L  +  + LK+L APF ++ +  G++ +T AA ++W+++R +L
Sbjct: 616 GRVR-SGQRLNPIVGTLLKKLGAPFTENTEPAGYYCSTGAAVEAWIKARIAL 666


>gi|297736720|emb|CBI25756.3| unnamed protein product [Vitis vinifera]
          Length = 201

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 142/184 (77%), Positives = 161/184 (87%)

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K S NC PDSWTFSS+ITI SC GKV EAEAM N MLEAGFEPN+FVLTSLIQCYGKA R
Sbjct: 4   KGSGNCMPDSWTFSSLITIYSCSGKVPEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANR 63

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLL 521
           TD+VVR  +RL EL ITPDDRFCGC+LNVMTQ+PKEELGKL++C++K+N KLG VVKLLL
Sbjct: 64  TDEVVRTFDRLLELDITPDDRFCGCMLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLL 123

Query: 522 EEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 581
           EEQ+ EG F+KEA+ELF+SIS DVKKAYCNCLIDLCVNLNLLE AC+L +LGLTLE+Y D
Sbjct: 124 EEQNGEGTFRKEASELFDSISADVKKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYID 183

Query: 582 IQSR 585
           I  +
Sbjct: 184 IHHQ 187



 Score = 39.7 bits (91), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 16/178 (8%)

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTAGN 285
           S  C PD+ T+SS+I  Y  +G V  A  + +      +  +PN F  ++LI+ YG A  
Sbjct: 6   SGNCMPDSWTFSSLITIYSCSGKVPEAEAMLNAMLEAGF--EPNIFVLTSLIQCYGKANR 63

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D  +  ++ +  + + P+      +L+ M ++ +    K I  +  D   +P       
Sbjct: 64  TDEVVRTFDRLLELDITPDDRFCGCMLNVMTQSPKEELGKLI--DCIDKA-NPKLGNVVK 120

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY----NTLLAMCADVGYTDEAFEIFE 399
           LL      + GE T    +E  E    +S  +     N L+ +C ++   ++A E+F+
Sbjct: 121 LLL---EEQNGEGTFR--KEASELFDSISADVKKAYCNCLIDLCVNLNLLEKACELFD 173


>gi|302791627|ref|XP_002977580.1| hypothetical protein SELMODRAFT_107283 [Selaginella moellendorffii]
 gi|300154950|gb|EFJ21584.1| hypothetical protein SELMODRAFT_107283 [Selaginella moellendorffii]
          Length = 555

 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 161/526 (30%), Positives = 269/526 (51%), Gaps = 9/526 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  YN+ +K+ R       +E L  +ML+  + PDN TFS  +SC++  +    A+ WF 
Sbjct: 25  VFAYNMMLKLLRDGEQWSLSEVLLKEMLEERIMPDNYTFSIFVSCSKRCDRAEDAIAWFH 84

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           R+   G   D +TYS+MID YG+AG    A  LY   R   W+ D  +F  +  +Y   G
Sbjct: 85  RLRETGVSFDGVTYSAMIDLYGKAGRTAEAMDLYQTMRKNNWKPDLVSFGVIANVYSRVG 144

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           ++   L ++ +M+   +KPN++ +N L+ T+GRA +    K ++ EM   GL P+  T +
Sbjct: 145 DYQAILRLFRDMEQAEIKPNVVLFNTLIGTLGRAGKVTLAKGMFDEMATYGLEPSEITLS 204

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L+  Y +    +  L VY  +K+K  +L V +YNTLL  C + G    A  +  +M+  
Sbjct: 205 ILIDMYTKVGALDKALDVYDTIKQKKWKLDVLVYNTLLKSCVESGNIQRAESLIAEME-M 263

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           E   PD  T+  ++ + + +G V+E  AMF+++      P     T LI+   +A   D 
Sbjct: 264 EKQWPDHMTYGILMNVYATKGMVAEVRAMFDKLKNLAVFPKAAFYTMLIKASKQAGDFDR 323

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVM--TQTPKEELGKLVECVEKSNSKLGYVVKLLL- 521
           +    + +   G + ++R  G L++    +Q   E    ++ECV+K   +L  ++  LL 
Sbjct: 324 IPGIFDEMVANGCSVNERMSGMLVSCASSSQISDETRLGVLECVKKIKPRLHELLSRLLV 383

Query: 522 --EEQDIEGDFKKEATE-LFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEV 578
             +E D   D   E TE L   I+   ++  CN +ID C  L     A  +L  G++  +
Sbjct: 384 LAKEDDDFDDIASETTEFLLREITAPSRRPMCNAVIDFCCVLGSRNAARAILSSGVSAGL 443

Query: 579 YTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY 638
           Y  + +  P+ W L+L++LS   A  AL  WI  L+ A E+G+EFP  + + TG G+ K 
Sbjct: 444 YHGLHTTLPSLWQLNLRTLSFAGAECALEAWIESLATAAENGDEFPEDVMVETGTGRAKE 503

Query: 639 SDK--GLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESR 682
           +     L+      LK +++PF ++    G+F+ +  AAK+WL+SR
Sbjct: 504 ATNSVSLSEFVGGVLKGMDSPFEENRRPGGYFIASGEAAKAWLQSR 549



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 127/286 (44%), Gaps = 4/286 (1%)

Query: 112 CSATEDDV--FSVLRCLGDDF--LEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVIL 167
           C   ED +  F  LR  G  F  +    +I L         A+ L     K     +++ 
Sbjct: 73  CDRAEDAIAWFHRLRETGVSFDGVTYSAMIDLYGKAGRTAEAMDLYQTMRKNNWKPDLVS 132

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           + V   V+ +  D     RLF DM    +KP+ V F+TLI           A   F+ M 
Sbjct: 133 FGVIANVYSRVGDYQAILRLFRDMEQAEIKPNVVLFNTLIGTLGRAGKVTLAKGMFDEMA 192

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           ++G +P  +T S +ID Y + G ++ A  +YD  + +KW++D   ++TL+K    +GN  
Sbjct: 193 TYGLEPSEITLSILIDMYTKVGALDKALDVYDTIKQKKWKLDVLVYNTLLKSCVESGNIQ 252

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              ++  EM+     P+ +TY  L++         +V+ ++ ++ +  + P    Y  L+
Sbjct: 253 RAESLIAEMEMEKQWPDHMTYGILMNVYATKGMVAEVRAMFDKLKNLAVFPKAAFYTMLI 312

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
           +A  +A   +    ++ EM   G  ++  +   L++  +    +DE
Sbjct: 313 KASKQAGDFDRIPGIFDEMVANGCSVNERMSGMLVSCASSSQISDE 358



 Score = 39.7 bits (91), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 393 EAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           EA + F   +S  + C+   + ++ M+ +     + S +E +  EMLE    P+ +  + 
Sbjct: 6   EALDFFRWARSRRDVCEITVFAYNMMLKLLRDGEQWSLSEVLLKEMLEERIMPDNYTFSI 65

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 510
            + C  +  R +D +   +RL E G++ D      ++++  +  +  E   L + + K+N
Sbjct: 66  FVSCSKRCDRAEDAIAWFHRLRETGVSFDGVTYSAMIDLYGKAGRTAEAMDLYQTMRKNN 125

Query: 511 SK 512
            K
Sbjct: 126 WK 127


>gi|413918172|gb|AFW58104.1| hypothetical protein ZEAMMB73_609509 [Zea mays]
          Length = 561

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 148/336 (44%), Positives = 205/336 (61%), Gaps = 10/336 (2%)

Query: 109 LDSCSATEDDVFSVLR-CLGDDFLEQDCVIILNNM--TNPDTAALALTYFTNKLKASKEV 165
           L++C   E  + + L+  L +   EQD VI+LN    T P+   LA  +F    +  K+V
Sbjct: 132 LNACDPDEAAIEAGLQSALPEPPSEQDAVIVLNMAIATRPEIVVLARRWFLGNAEVQKKV 191

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ILYNV +K+ RK +   + E  +  ML  G++PDN  FST+ SCA    L +K V+WF++
Sbjct: 192 ILYNVELKLLRKKQHWCETEAPWAKMLRHGMQPDNTIFSTINSCACAYGLLSKVVKWFDK 251

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M  FGC PD LTYS++ID Y   GN E A     RAR EKW++DP    T+ +++ T+GN
Sbjct: 252 MSGFGCSPDWLTYSAVIDTYDHTGNFEAAL---RRARAEKWQLDPVLCCTVNEVHSTSGN 308

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F+  LN+++EMKA GV PN++  N  L  MG A +PW VK+I++EM D  +  N  TY  
Sbjct: 309 FNRALNLFKEMKATGVNPNLVMCNTRLYVMGHALQPWVVKSIHREMIDKQVQHNKVTYCC 368

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS- 404
           LL AY RA Y ED ++VYR MK++ M   V LYN LL+   D+GY DEA EIF DMK+S 
Sbjct: 369 LLHAYTRAHYDEDAMAVYRLMKDEAM--DVMLYNMLLSRYVDIGYVDEAEEIFRDMKASM 426

Query: 405 -ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
            +  +PD W++SSM+   S    V   E + NEM+E
Sbjct: 427 DDRSKPDKWSYSSMLRQYSSTANVLGVEGILNEMVE 462


>gi|302786806|ref|XP_002975174.1| hypothetical protein SELMODRAFT_10825 [Selaginella moellendorffii]
 gi|300157333|gb|EFJ23959.1| hypothetical protein SELMODRAFT_10825 [Selaginella moellendorffii]
          Length = 555

 Score =  268 bits (684), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 163/526 (30%), Positives = 270/526 (51%), Gaps = 9/526 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  YN+ +K+ R       +E L  +ML+  + PDN TFS  +SC++  +    A+ WF 
Sbjct: 29  VFAYNMMLKLLRDGEQWSLSEELLKEMLEERIMPDNYTFSIFVSCSKRCDQAEDAIAWFH 88

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           R+   G   D +TYS+MID YG+AG    A  LY   R   W+ D  +F  +  +Y   G
Sbjct: 89  RLRETGVSFDGVTYSAMIDLYGKAGRTAEAMDLYQTMRKNNWKPDLVSFGVIANVYSRVG 148

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           ++   L ++ +M+   +KPN++ +N L+ T+GRA +    K ++ EM   GL P+  T +
Sbjct: 149 DYQAILRLFRDMEQAEIKPNVVLFNTLIGTLGRAGKVTLAKGMFDEMASYGLEPSEITLS 208

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L+  Y +    +  L VY  +K+K  +L V +YNTLL  C + G    A  +  +M+  
Sbjct: 209 ILIDMYTKVGALDKALDVYDTIKQKKWKLDVLVYNTLLKSCVESGNIQRAESLIAEME-R 267

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           E   PD  T+  ++ + + +G V+E  AMF+++      P     T LI+   +A   D 
Sbjct: 268 EKQWPDHMTYGILMNVYATKGMVAEVRAMFDKLKNLAVFPKAAFYTMLIKASKQAGDFDR 327

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVM--TQTPKEELGKLVECVEKSNSKLGYVVKLLL- 521
           +    + +   G + ++R  G L++    +Q   E    ++ECV+K   +L  ++  LL 
Sbjct: 328 IPGIFDEMIANGCSVNERMSGMLVSCASSSQISDETRLGVLECVKKIKPRLHELLSRLLV 387

Query: 522 --EEQDIEGDFKKEATE-LFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEV 578
             +E D   D   E TE L   I+   ++  CN +ID C  L     A  +L  G++  +
Sbjct: 388 LAKEDDDFDDIASETTEFLLREITAPSRRPMCNAVIDFCCVLGSRNAARAILSSGVSAGL 447

Query: 579 YTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY 638
           Y  + +  P+ W L+L++LS  AA  AL  WI  L+ A E+G+EFP  L + TG G+ K 
Sbjct: 448 YHGLHTTLPSLWQLNLRTLSFAAAECALEAWIESLATAAENGDEFPEDLMVETGTGRAKE 507

Query: 639 SDK--GLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESR 682
           +     L+      LK +++PF ++    G+F+ +  AAK+WL+SR
Sbjct: 508 ATNSVSLSEFVGGVLKGMDSPFEENRRPGGYFIASGEAAKAWLQSR 553



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 127/286 (44%), Gaps = 4/286 (1%)

Query: 112 CSATEDDV--FSVLRCLGDDF--LEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVIL 167
           C   ED +  F  LR  G  F  +    +I L         A+ L     K     +++ 
Sbjct: 77  CDQAEDAIAWFHRLRETGVSFDGVTYSAMIDLYGKAGRTAEAMDLYQTMRKNNWKPDLVS 136

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           + V   V+ +  D     RLF DM    +KP+ V F+TLI           A   F+ M 
Sbjct: 137 FGVIANVYSRVGDYQAILRLFRDMEQAEIKPNVVLFNTLIGTLGRAGKVTLAKGMFDEMA 196

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S+G +P  +T S +ID Y + G ++ A  +YD  + +KW++D   ++TL+K    +GN  
Sbjct: 197 SYGLEPSEITLSILIDMYTKVGALDKALDVYDTIKQKKWKLDVLVYNTLLKSCVESGNIQ 256

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              ++  EM+     P+ +TY  L++         +V+ ++ ++ +  + P    Y  L+
Sbjct: 257 RAESLIAEMEREKQWPDHMTYGILMNVYATKGMVAEVRAMFDKLKNLAVFPKAAFYTMLI 316

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
           +A  +A   +    ++ EM   G  ++  +   L++  +    +DE
Sbjct: 317 KASKQAGDFDRIPGIFDEMIANGCSVNERMSGMLVSCASSSQISDE 362



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 98/209 (46%), Gaps = 1/209 (0%)

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
           F  + R+R +   I   A++ ++KL      +     + +EM    + P+  T++  +  
Sbjct: 14  FFRWARSRRDVCEITVFAYNMMLKLLRDGEQWSLSEELLKEMLEERIMPDNYTFSIFVSC 73

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
             R  +       +  + + G+S +  TY++++  YG+A    + + +Y+ M++   +  
Sbjct: 74  SKRCDQAEDAIAWFHRLRETGVSFDGVTYSAMIDLYGKAGRTAEAMDLYQTMRKNNWKPD 133

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           +  +  +  + + VG       +F DM+ +E  +P+   F+++I      GKV+ A+ MF
Sbjct: 134 LVSFGVIANVYSRVGDYQAILRLFRDMEQAE-IKPNVVLFNTLIGTLGRAGKVTLAKGMF 192

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +EM   G EP+   L+ LI  Y K    D
Sbjct: 193 DEMASYGLEPSEITLSILIDMYTKVGALD 221


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 161/583 (27%), Positives = 264/583 (45%), Gaps = 60/583 (10%)

Query: 151 ALTYFTNKLKAS--KEVILYNVTMKVFRKCR-DLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AL  F    KA     +I YN  +    K   DL KA  +F++M   GV+PD +TF++LI
Sbjct: 253 ALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLI 312

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +     +L   +   F  M   G + D  TY+++IDA  + G +E+A  +    R +   
Sbjct: 313 AVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKN-- 370

Query: 268 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I PN   +ST+I  YG  G F+  + +Y +MK  GV+P+ ++YN L+D   +  R     
Sbjct: 371 ISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDAL 430

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
           T  K+M   GL  +  TY +L+ AYG+    +D   ++ +MK +G+  +V  Y+ L+   
Sbjct: 431 TACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAY 490

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
           +  G   +A  IF + K +   +PD   +SS+I  C   G V +A  +  EM +AG +PN
Sbjct: 491 SKAGMHQDATSIFVEFKRA-GLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPN 549

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLP-------------------------------- 473
           +    SLI  YG+  + D+V  A   +P                                
Sbjct: 550 IVTYNSLIDAYGRNGQVDNVEAAKGNMPINVFNKVGDRSTEIICKTLTSQQNANDHTGVL 609

Query: 474 ----------ELGITPDDRFCGCLLNVMTQ-TPKEELGKLVECVEKSNSKLGYVVKLLLE 522
                     + G+ P+      +LN  ++ +  +E   L+E +   +S +  +   LL 
Sbjct: 610 AAVSVFHEMQQFGLKPNVVTFSAILNACSRCSSLQEASVLLEQMRFFDSWVYGIAHGLL- 668

Query: 523 EQDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVY 579
              +      EA  LF+ I++       A+ N L D+  +    + A +++      +V+
Sbjct: 669 -MGLREHVWVEAQRLFDEIARMDYATGAAFYNALTDVLWHFGQRQGAQEVVVAAKRRQVW 727

Query: 580 TDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYS 639
            +   RS  Q+ L L  +S+GAA   LH+W+ DL   +  G   P +L I TG GKH   
Sbjct: 728 ENAWWRSEQQFCLDLHLMSVGAAQAMLHVWLLDLRALVWDGHALPRVLSILTGWGKHS-K 786

Query: 640 DKGLASV---FESHLKELNAPFHDSPDKVGWFLTTEAAAKSWL 679
             G ++V    ES L E+ APF       G  +      ++WL
Sbjct: 787 VAGFSTVKRAVESRLLEIKAPFQVGRYNEGRLVCAGHIVRAWL 829



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 165/345 (47%), Gaps = 18/345 (5%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           L ++ +    +   ++ A  +F+     G   +   +S ++S    +    +A++ F+ M
Sbjct: 201 LASIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAM 260

Query: 227 PSFGCDPDALTYSSMIDAYGRAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
              GC P+ +TY+++IDA G+ G +++ A  +++  + E    D   F++LI +      
Sbjct: 261 KKAGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSL 320

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           ++    V+ EM+  G++ ++ TYN L+D + +  +     +I   M    +SPN  TY++
Sbjct: 321 WEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYST 380

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++  YG+    E+ + +Y +MKE G++     YNTL+ + A +G  D+A    +DM+   
Sbjct: 381 MIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERV- 439

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             + D  T++++I     +GK  +A  +F++M   G  PN+   ++LI  Y KA    D 
Sbjct: 440 GLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDA 499

Query: 466 VRALNRLPELGITPD--------DRFCGC--------LLNVMTQT 494
                     G+ PD        D  C C        LL  MTQ 
Sbjct: 500 TSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQA 544



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 161/338 (47%), Gaps = 6/338 (1%)

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           S MI   GR G VE+A  +++RA+   +  +  A+S ++  YG +G     L V++ MK 
Sbjct: 203 SIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKK 262

Query: 299 IGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
            G KPN+ITYN ++D  G+      +   I++EM   G+ P+  T+ SL+    R    E
Sbjct: 263 AGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWE 322

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           D+  V+ EM+ +G++  +  YNTL+      G  + A  I   M+  +N  P+  T+S+M
Sbjct: 323 DSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMR-LKNISPNVVTYSTM 381

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I      G   EA  ++++M E+G  P+     +LI  Y K  R DD + A   +  +G+
Sbjct: 382 IDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGL 441

Query: 478 TPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536
             D      L++   +  K ++   L + ++        +    L +   +    ++AT 
Sbjct: 442 KADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATS 501

Query: 537 LFNSISKDVKK---AYCNCLIDLCVNLNLLENACKLLE 571
           +F    +   K      + LID C    L+E+A  LL+
Sbjct: 502 IFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQ 539


>gi|224089797|ref|XP_002308815.1| predicted protein [Populus trichocarpa]
 gi|222854791|gb|EEE92338.1| predicted protein [Populus trichocarpa]
          Length = 129

 Score =  203 bits (516), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 87/126 (69%), Positives = 105/126 (83%)

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           MID+YGRAGNVE A  LYDRAR  +WR+D   FSTLI++Y  AGNFDGCLNVYEEMKA+G
Sbjct: 1   MIDSYGRAGNVEKALSLYDRARTGEWRLDATTFSTLIRIYKVAGNFDGCLNVYEEMKALG 60

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           VKPN++ YN LLD MGRAKRPWQVK  Y+++ D+GLSP++ TYA+LL AYGRARYG+D  
Sbjct: 61  VKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDSGLSPSFVTYAALLHAYGRARYGDDAF 120

Query: 361 SVYREM 366
            +YR+M
Sbjct: 121 KIYRKM 126



 Score = 51.6 bits (122), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 63/127 (49%), Gaps = 1/127 (0%)

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++ +YGRA   E  LS+Y   +    +L  T ++TL+ +    G  D    ++E+MK+  
Sbjct: 1   MIDSYGRAGNVEKALSLYDRARTGEWRLDATTFSTLIRIYKVAGNFDGCLNVYEEMKAL- 59

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +P+   ++ ++       +  + +  + +++++G  P+     +L+  YG+A+  DD 
Sbjct: 60  GVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDSGLSPSFVTYAALLHAYGRARYGDDA 119

Query: 466 VRALNRL 472
            +   ++
Sbjct: 120 FKIYRKM 126



 Score = 46.2 bits (108), Expect = 0.058,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 51/93 (54%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           ++  +++++   + D    ++++M   GVKP+ V ++ L+        P +  ++++ + 
Sbjct: 33  FSTLIRIYKVAGNFDGCLNVYEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDII 92

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR 260
             G  P  +TY++++ AYGRA   + AF +Y +
Sbjct: 93  DSGLSPSFVTYAALLHAYGRARYGDDAFKIYRK 125



 Score = 46.2 bits (108), Expect = 0.063,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 35/157 (22%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           + +  +++KA  L+D       + D  TFSTLI   ++    +  +  +E M + G  P+
Sbjct: 5   YGRAGNVEKALSLYDRARTGEWRLDATTFSTLIRIYKVAGNFDGCLNVYEEMKALGVKPN 64

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
            + Y+ ++DA GRA                 W++                        Y+
Sbjct: 65  LVIYNILLDAMGRA--------------KRPWQVK---------------------KFYQ 89

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           ++   G+ P+ +TY  LL   GRA+       IY++M
Sbjct: 90  DIIDSGLSPSFVTYAALLHAYGRARYGDDAFKIYRKM 126



 Score = 40.8 bits (94), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G  ++A  +++  ++ E  + D+ TFS++I I    G       ++ EM   G +PNL +
Sbjct: 9   GNVEKALSLYDRARTGE-WRLDATTFSTLIRIYKVAGNFDGCLNVYEEMKALGVKPNLVI 67

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
              L+   G+A+R   V +    + + G++P
Sbjct: 68  YNILLDAMGRAKRPWQVKKFYQDIIDSGLSP 98


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 156/582 (26%), Positives = 262/582 (45%), Gaps = 59/582 (10%)

Query: 151 ALTYFTNKLKAS--KEVILYNVTMKVFRKCR-DLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AL  F    KA     +I YN  +    K   DL +A  +FD+M   GV+PD +TF++LI
Sbjct: 254 ALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLI 313

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +      L   +   F  M   G + D  T++++IDA  + G +E+A  +    R +   
Sbjct: 314 AVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKN-- 371

Query: 268 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I PN   +ST+I  YG  G F+  +++Y +MK  GV+P+ ++YN L+D   +  R     
Sbjct: 372 ISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDAL 431

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
              K+M   GL  +  TY +L+ AYG+    +D   ++ +MK +G+  +V  Y+ L+   
Sbjct: 432 IACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSY 491

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
           +  G   +   +F + K +   +PD   +SS+I  C   G V +A  +  EM +AG +PN
Sbjct: 492 SKAGMHQDVSNVFTEFKRA-GLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPN 550

Query: 446 LFVLTSLIQCYGK---------------------AQRTDDVVR----------------- 467
           +    SLI  YG+                      +R+ +VVR                 
Sbjct: 551 IVTYNSLIDAYGRYGQADKLEAVKANMPNSVQKIGERSMEVVRKPPPSQQNASDHTGVLA 610

Query: 468 ---ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEE 523
                + + + G+ P+      +LN  ++    +E   L+E +   +  +  +   LL  
Sbjct: 611 AVSVFHEMQQFGLKPNVVTFSAILNACSRCASLQEASVLLEQMRFFDGWVYGIAHGLL-- 668

Query: 524 QDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT 580
             +      EA  LF+ IS+       A+ N L D+  +    + A +++      +V+ 
Sbjct: 669 MGLREQVWVEAQRLFDEISRMDYATGAAFYNALTDVLWHFGQRQGAQEVVVAAKRRQVWE 728

Query: 581 DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSD 640
           +   RS  Q+ L L  +S+GAA   LH+W+ DL   +  G   P +L I TG GKH    
Sbjct: 729 NAWWRSEQQFCLDLHLMSVGAAQAMLHVWLLDLRALVWDGHALPRVLSILTGWGKHS-KV 787

Query: 641 KGLASV---FESHLKELNAPFHDSPDKVGWFLTTEAAAKSWL 679
            G+++V    E  L+E+ APF       G  +      + WL
Sbjct: 788 AGVSTVKRAVELRLQEIKAPFQVGRYNEGRLVCAGHIVREWL 829



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 168/345 (48%), Gaps = 18/345 (5%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           L ++ +    +   ++ A  +F+     G   +   +S ++S    +    +A++ F+ M
Sbjct: 202 LASIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAM 261

Query: 227 PSFGCDPDALTYSSMIDAYGRAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
              GC P+ +TY+++IDA G+ G +++ A  ++D  + E    D   F++LI +    G 
Sbjct: 262 KKAGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGL 321

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           ++    V+ EM+  G++ ++ T+N L+D + +  +     +I   M    +SPN  TY++
Sbjct: 322 WEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYST 381

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++  YG+    E+ +S+Y +MKE G++     YNTL+ + A +G  D+A    +DM+   
Sbjct: 382 MIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERV- 440

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             + D  T++++I     +GK  +A  +F++M   G  PN+   ++LI  Y KA    DV
Sbjct: 441 GLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDV 500

Query: 466 VRALNRLPELGITPD--------DRFCGC--------LLNVMTQT 494
                     G+ PD        D  C C        LL  MTQ 
Sbjct: 501 SNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQA 545



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 161/341 (47%), Gaps = 12/341 (3%)

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           S MI   GR G VE+A  +++RA+   +  +  A+S ++  YG +G     L V++ MK 
Sbjct: 204 SIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKK 263

Query: 299 IGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
            G KPN+ITYN ++D  G+      Q   I+ EM   G+ P+  T+ SL+    R    E
Sbjct: 264 AGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWE 323

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           D+  V+ EM+ +G++  +  +NTL+      G  + A  I   M+  +N  P+  T+S+M
Sbjct: 324 DSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMR-GKNISPNVVTYSTM 382

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I      G   EA +++++M E+G  P+     +LI  Y K  R DD + A   +  +G+
Sbjct: 383 IDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGL 442

Query: 478 TPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 537
             D      L++   +  K    K   C+       G V  +L     I+   K    + 
Sbjct: 443 KADVVTYNALIDAYGKQGKY---KDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQD 499

Query: 538 FNSISKDVKKA-------YCNCLIDLCVNLNLLENACKLLE 571
            +++  + K+A         + LID C    L+E+A  LL+
Sbjct: 500 VSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQ 540



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 173/407 (42%), Gaps = 86/407 (21%)

Query: 131 LEQDCVIILNNMTNP-------DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDK 183
           +EQD +   N + +        + AA  +T    K   S  V+ Y+  +  + K    ++
Sbjct: 337 IEQD-IFTFNTLIDAVCKGGQMELAASIMTTMRGK-NISPNVVTYSTMIDGYGKLGCFEE 394

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           A  L+ DM + GV+PD V+++TLI   A++    +  +   + M   G   D +TY+++I
Sbjct: 395 AISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIA-CKDMERVGLKADVVTYNALI 453

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVY------- 293
           DAYG+ G  + A  L+D+ + E   + PN   +S LI  Y  AG      NV+       
Sbjct: 454 DAYGKQGKYKDAACLFDKMKGEG--LVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAG 511

Query: 294 ----------------------------EEMKAIGVKPNMITYNNLLDTMGR-------- 317
                                       +EM   G++PN++TYN+L+D  GR        
Sbjct: 512 LKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQADKLE 571

Query: 318 ---AKRPWQVKTIYKEMTDNGLSP-----NWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
              A  P  V+ I +   +    P     N + +  +L A          +SV+ EM++ 
Sbjct: 572 AVKANMPNSVQKIGERSMEVVRKPPPSQQNASDHTGVLAA----------VSVFHEMQQF 621

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS-SMITICSCRGKV- 427
           G++ +V  ++ +L  C+      EA  + E M+       D W +  +   +   R +V 
Sbjct: 622 GLKPNVVTFSAILNACSRCASLQEASVLLEQMRFF-----DGWVYGIAHGLLMGLREQVW 676

Query: 428 SEAEAMFNEMLEAGFEPNLF---VLTSLIQCYGKAQRTDDVVRALNR 471
            EA+ +F+E+    +         LT ++  +G+ Q   +VV A  R
Sbjct: 677 VEAQRLFDEISRMDYATGAAFYNALTDVLWHFGQRQGAQEVVVAAKR 723


>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 139/525 (26%), Positives = 251/525 (47%), Gaps = 23/525 (4%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F +  ++     LF +ML RG++ D  T++TL+         + A +    MP     P+
Sbjct: 187 FNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPN 246

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
            +TYS++ID Y +AG ++ A  L++  +     +D  +++TL+ +Y   G F+  LNV +
Sbjct: 247 VVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCK 306

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           EM++ G+K + +TYN LL   G+  +  +VK +++EM    + PN  TY++L+  Y +  
Sbjct: 307 EMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGG 366

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
             ++ + V+RE K+ G++  V LY+ L+ A+C + G  + A    ++M + E  +P+  T
Sbjct: 367 LYQEAMEVFREFKKAGLKADVVLYSALIDALCKN-GLVESAVSFLDEM-TKEGIRPNVVT 424

Query: 414 FSSMITICSCRGKVSEA-EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD-----VVR 467
           ++S+I      G V +A E+   +  +         L +   C+ K +         ++ 
Sbjct: 425 YNSIIDAFGRSGIVEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEILCILA 484

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK-SNSKLGYVVKLLLEEQD 525
             +++ EL I P+      +LN  ++    E+   L+E +    N   G    LL+   D
Sbjct: 485 VFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYGD 544

Query: 526 IEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 582
              +   +A  LF+ + +       A+ N L D+  +      A  ++  G    V+ ++
Sbjct: 545 ---NVWVQAQSLFDEVKQMDSSTASAFYNALTDMLWHFGQRRGAQLVVLEGKRRHVWENM 601

Query: 583 QSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHK--YSD 640
            S S     L L  +S GAA   +H W+ ++   +  G E P LL I TG GKH     D
Sbjct: 602 WSNS----CLDLHLMSSGAARAMVHAWLLNIRSIVFEGHELPQLLSILTGWGKHSKVVGD 657

Query: 641 KGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSL 685
             L    E+ L  + APF  +   +G F++T A   +WL    +L
Sbjct: 658 GALRRAIEALLTGMGAPFRVAKCNLGRFISTGAVVAAWLRESGTL 702


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 150/558 (26%), Positives = 263/558 (47%), Gaps = 49/558 (8%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I YN  + V  +    + A  LF++M+DRG+  D  T++TL+         + A E    
Sbjct: 294 ITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLE 353

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           MP     P+ +TYS+M D Y +AG +E A  LY+  +     +D  +++TL+ +Y   G 
Sbjct: 354 MPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGR 413

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F+  L V +EM + GVK +++TYN LLD  G+  +  +V  ++KEM  + + PN  TY++
Sbjct: 414 FEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYST 473

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSS 404
           L+  Y +    E+ + V+RE K+ G++  V LY+ L+ A+C + G  D A  + ++M + 
Sbjct: 474 LIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKN-GLVDSAVLLLDEM-TK 531

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMF------NE--------MLEAGFEP------ 444
           E  +P+  T++S+I      G+ + AE +       NE        ML  G +       
Sbjct: 532 EGIRPNVVTYNSII---DAFGRSTTAEFLVDGVGASNERQSESPSFMLIEGVDESEINWD 588

Query: 445 --NLF----VLTSLIQCYGKAQR-----TDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
             ++F     L S  +   K +R        ++    ++ EL I P+      +LN  ++
Sbjct: 589 DGHVFKFYQQLVSEKEGPAKKERLGKEEIRSILSVFKKMHELEIKPNVVTFSAILNACSR 648

Query: 494 TPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK---DVKKAY 549
               E+   L+E +   ++++  V   LL       +   +A  LF+ + +       A+
Sbjct: 649 CKSIEDASMLLEELRLFDNQVYGVAHGLL--MGFSENVWIQAQYLFDEVKQMDSSTASAF 706

Query: 550 CNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIW 609
            N L D+  +      A  ++  G   +V+  + S S     L L  +S GAA   +H W
Sbjct: 707 YNALTDMLWHFGQKRGAQLVVLEGKRRKVWETLWSDS----CLDLHLMSSGAARAMVHAW 762

Query: 610 INDLSKALESGEEFPPLLGINTGHGKHK--YSDKGLASVFESHLKELNAPFHDSPDKVGW 667
           +  +   +  G + P LL I TG GKH     D  L    E+ L  + APF  +   +G 
Sbjct: 763 LLGIHSVVFEGHQLPKLLSILTGWGKHSKVVGDGALRRAIEALLTSMGAPFRVAKCNIGR 822

Query: 668 FLTTEAAAKSWLESRSSL 685
           +++T +   +WL+   +L
Sbjct: 823 YVSTGSVVAAWLKESGTL 840



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 169/339 (49%), Gaps = 8/339 (2%)

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           S+MI   GR G VE+A G+++ A +E +     AFS LI  YG +G FD  + V+E MK 
Sbjct: 191 SAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKV 250

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
            G+KPN++TYN ++D  G+    ++ V  I++EM  NG+ P+  TY SLL    R    E
Sbjct: 251 SGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWE 310

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
              +++ EM ++G+   V  YNTLL      G  D A+EI  +M   +   P+  T+S+M
Sbjct: 311 AARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEM-PGKKILPNVVTYSTM 369

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
               +  G++ +A  ++NEM   G   +     +L+  Y K  R +D ++    +   G+
Sbjct: 370 ADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGV 429

Query: 478 TPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536
             D      LL+   +  K  E+ ++ + ++K       +    L +   +G   +EA E
Sbjct: 430 KKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAME 489

Query: 537 LFNSISKDVKKA----YCNCLIDLCVNLNLLENACKLLE 571
           +F    +   KA    Y   +  LC N  L+++A  LL+
Sbjct: 490 VFREFKQAGLKADVVLYSELINALCKN-GLVDSAVLLLD 527



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 155/312 (49%), Gaps = 2/312 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           ++ A+ +F+  L  G       FS LIS    +   ++A++ FE M   G  P+ +TY++
Sbjct: 203 VELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNA 262

Query: 241 MIDAYGRAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           +IDA G+ G   +    +++       + D   +++L+ +    G ++   N++ EM   
Sbjct: 263 VIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDR 322

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G+  ++ TYN LLD + +  +      I  EM    + PN  TY+++   Y +A   ED 
Sbjct: 323 GIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDA 382

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           L++Y EMK  G+ L    YNTLL++ A +G  ++A ++ ++M SS   + D  T+++++ 
Sbjct: 383 LNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSS-GVKKDVVTYNALLD 441

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
               +GK +E   +F EM +    PNL   ++LI  Y K    ++ +       + G+  
Sbjct: 442 GYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKA 501

Query: 480 DDRFCGCLLNVM 491
           D      L+N +
Sbjct: 502 DVVLYSELINAL 513


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 159/317 (50%), Gaps = 1/317 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  YN  +    K   L +A  LF +M +RG  PD  T+++LI          KA+E  
Sbjct: 113 DVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELL 172

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   GC PD +TYSS+I   G+ G    AF L+   +    + D   F+ L+   G A
Sbjct: 173 EEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKA 232

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D  L + +EMK  GVKP ++TYN L+   G+     +   +  EM  NG  P+  TY
Sbjct: 233 GRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTY 292

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+    +A   ++   V ++M+++G       YNTL+      G  ++A  +F+ MK 
Sbjct: 293 SCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMK- 351

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S+ C PD  T+S++IT      +V  A  +F EM   G +P+LF   S+I   GKA + D
Sbjct: 352 SKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVD 411

Query: 464 DVVRALNRLPELGITPD 480
           D  R  + +   G++PD
Sbjct: 412 DADRLFSEMRGKGLSPD 428



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 175/350 (50%), Gaps = 2/350 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +  F K  DL +A  L D+M   G KPD VT+S LI+     +  ++A +  +
Sbjct: 254 VVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLK 313

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M   GC PD +TY+++I+  G+AG +  A  L+DR +++    D   +STLI   G A 
Sbjct: 314 KMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAA 373

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +    ++EEM+++G++P++ TY +++  +G+A +      ++ EM   GLSP+  TY 
Sbjct: 374 RVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYN 433

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           + L + GR    ++   ++ +MKE G+   V  Y+ LL   +     D+A  + +++   
Sbjct: 434 AFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKEL-IE 492

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           + C  DS  F   + I +  G V EA  +       G  P      +LI    KA R  +
Sbjct: 493 QGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSE 552

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECVEKSNSKL 513
               L  L E G  PD      L++ + QT + +   +L+E + K   KL
Sbjct: 553 AFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKL 602



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 167/314 (53%), Gaps = 1/314 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y+  +    K   LD+A ++   M   G  PD +T++TLI+      L N A   F
Sbjct: 288 DVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLF 347

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           +RM S GC+PD +TYS++I A G+A  VE A  L++   +   + D   + ++I + G A
Sbjct: 348 DRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKA 407

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D    ++ EM+  G+ P++ITYN  L+++GR  R  + + I+++M ++GL P+  TY
Sbjct: 408 GQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATY 467

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +LL    + +  +D   + +E+ E+G       ++  L +    G  DEA E+ +   +
Sbjct: 468 DALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQ-FAN 526

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S+   P + +++++I   +  G+VSEA     ++ E G +P++   +SLI   G+  + D
Sbjct: 527 SKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQID 586

Query: 464 DVVRALNRLPELGI 477
                L  + + G+
Sbjct: 587 TAFELLEEMSKRGL 600



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 165/326 (50%), Gaps = 4/326 (1%)

Query: 158 KLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
           +LKA+K   +V+ Y+  +    +    + A  +  +M  +G KP+  T++TL+ C     
Sbjct: 34  ELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAG 93

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
             ++A+     M   GC PD  TY+ +I   G+AG +  AF L+   R      D   ++
Sbjct: 94  QFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYN 153

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
           +LI   G  G     + + EEM+  G  P+++TY++L+  +G+     +   +++EM   
Sbjct: 154 SLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRR 213

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G  P+  T+ +L+ A G+A   +D L +  EMKE+G++  V  YN L+A    VG   EA
Sbjct: 214 GRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEA 273

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           + + ++MK +  C+PD  T+S +IT      ++ EA  +  +M + G  P+     +LI 
Sbjct: 274 YNLLDEMKRN-GCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLIN 332

Query: 455 CYGKAQRTDDVVRALNRLPELGITPD 480
             GKA   +D  R  +R+   G  PD
Sbjct: 333 GLGKAGLLNDAGRLFDRMKSKGCNPD 358



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 106/226 (46%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++  Y   + V  K   +D A+RLF +M  +G+ PD +T++  ++         +A + F
Sbjct: 393 DLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIF 452

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  PD  TY +++    +   V+ A GL      +    D   F   +++  + 
Sbjct: 453 EDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSW 512

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           GN D    + +   + G+ P   +YN L+D + +A R  +     +++ + G  P+  +Y
Sbjct: 513 GNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSY 572

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           +SL+ A G+    +    +  EM ++G++LS   Y+ L+    D G
Sbjct: 573 SSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKLQDWG 618



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 90/187 (48%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +VI YN  +    +     +A ++F+DM + G+ PD  T+  L+         + A  
Sbjct: 426 SPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACG 485

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + +   GC  D+L +   ++     GNV+ A  L   A ++      ++++ LI    
Sbjct: 486 LLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALA 545

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AG      N  E++K  G KP++++Y++L+  +G+  +      + +EM+  GL  +  
Sbjct: 546 KAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPR 605

Query: 342 TYASLLR 348
           +Y++L+R
Sbjct: 606 SYSNLVR 612



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 1/123 (0%)

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           +V  YN+LL   A  G  +EA  +FE++K+++   PD  ++S +I      GK   A  +
Sbjct: 8   NVVTYNSLLNALAKAGQCEEAQLLFEELKAAK-WTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
             EM   G +PNL+   +L+ C GKA + D+ +R L  + + G  PD R   CL++ + +
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGK 126

Query: 494 TPK 496
             +
Sbjct: 127 AGR 129


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 150/558 (26%), Positives = 263/558 (47%), Gaps = 49/558 (8%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I YN  + V  +    + A  LF++M+DRG+  D  T++TL+         + A E    
Sbjct: 294 ITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLE 353

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           MP     P+ +TYS+M D Y +AG +E A  LY+  +     +D  +++TL+ +Y   G 
Sbjct: 354 MPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGR 413

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F+  L V +EM + GVK +++TYN LLD  G+  +  +V  ++KEM  + + PN  TY++
Sbjct: 414 FEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYST 473

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSS 404
           L+  Y +    E+ + V+RE K+ G++  V LY+ L+ A+C + G  D A  + ++M + 
Sbjct: 474 LIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKN-GLVDSAVLLLDEM-TK 531

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMF------NE--------MLEAGFEP------ 444
           E  +P+  T++S+I      G+ + AE +       NE        ML  G +       
Sbjct: 532 EGIRPNVVTYNSII---DAFGRSTTAEFLVDGVGASNERQSESPTFMLIEGVDESEINWD 588

Query: 445 --NLF----VLTSLIQCYGKAQR-----TDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
             ++F     L S  +   K +R        ++    ++ EL I P+      +LN  ++
Sbjct: 589 DGHVFKFYQQLVSEKEGPAKKERLGKEEIRSILSVFKKMHELEIKPNVVTFSAILNACSR 648

Query: 494 TPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK---DVKKAY 549
               E+   L+E +   ++++  V   LL       +   +A  LF+ + +       A+
Sbjct: 649 CKSIEDASMLLEELRLFDNQVYGVAHGLL--MGFSENVWIQAQYLFDEVKQMDSSTASAF 706

Query: 550 CNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIW 609
            N L D+  +      A  ++  G   +V+  + S S     L L  +S GAA   +H W
Sbjct: 707 YNALTDMLWHFGQKRGAQLVVLEGKRRKVWETLWSDS----CLDLHLMSSGAARAMVHAW 762

Query: 610 INDLSKALESGEEFPPLLGINTGHGKHK--YSDKGLASVFESHLKELNAPFHDSPDKVGW 667
           +  +   +  G + P LL I TG GKH     D  L    E+ L  + APF  +   +G 
Sbjct: 763 LLGIHSVVFEGHQLPKLLSILTGWGKHSKVVGDGALRRAIEALLTSMGAPFRVAKCNIGR 822

Query: 668 FLTTEAAAKSWLESRSSL 685
           +++T +   +WL+   +L
Sbjct: 823 YVSTGSVVAAWLKESGTL 840



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 169/339 (49%), Gaps = 8/339 (2%)

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           S+MI   GR G VE+A G+++ A +E +     AFS LI  YG +G FD  + V+E MK 
Sbjct: 191 SAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKV 250

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
            G+KPN++TYN ++D  G+    ++ V  I++EM  NG+ P+  TY SLL    R    E
Sbjct: 251 SGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWE 310

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
              +++ EM ++G+   V  YNTLL      G  D A+EI  +M   +   P+  T+S+M
Sbjct: 311 AARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEM-PGKKILPNVVTYSTM 369

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
               +  G++ +A  ++NEM   G   +     +L+  Y K  R +D ++    +   G+
Sbjct: 370 ADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGV 429

Query: 478 TPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536
             D      LL+   +  K  E+ ++ + ++K       +    L +   +G   +EA E
Sbjct: 430 KKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAME 489

Query: 537 LFNSISKDVKKA----YCNCLIDLCVNLNLLENACKLLE 571
           +F    +   KA    Y   +  LC N  L+++A  LL+
Sbjct: 490 VFREFKQAGLKADVVLYSELINALCKN-GLVDSAVLLLD 527



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 147/289 (50%), Gaps = 5/289 (1%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           +  +   +F++ML  GV+PD +T+++L++      L   A   F  M   G D D  TY+
Sbjct: 273 EFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYN 332

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMK 297
           +++DA  + G +++A+ +      +K  I PN   +ST+   Y  AG  +  LN+Y EMK
Sbjct: 333 TLLDAVCKGGQMDLAYEIMLEMPGKK--ILPNVVTYSTMADGYAKAGRLEDALNLYNEMK 390

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
            +G+  + ++YN LL    +  R      + KEM  +G+  +  TY +LL  YG+     
Sbjct: 391 FLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFN 450

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           +   V++EMK+  +  ++  Y+TL+ + +     +EA E+F + K +   + D   +S +
Sbjct: 451 EVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQA-GLKADVVLYSEL 509

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
           I      G V  A  + +EM + G  PN+    S+I  +G++   + +V
Sbjct: 510 INALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAEFLV 558



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 155/312 (49%), Gaps = 2/312 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           ++ A+ +F+  L  G       FS LIS    +   ++A++ FE M   G  P+ +TY++
Sbjct: 203 VELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNA 262

Query: 241 MIDAYGRAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           +IDA G+ G   +    +++       + D   +++L+ +    G ++   N++ EM   
Sbjct: 263 VIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDR 322

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G+  ++ TYN LLD + +  +      I  EM    + PN  TY+++   Y +A   ED 
Sbjct: 323 GIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDA 382

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           L++Y EMK  G+ L    YNTLL++ A +G  ++A ++ ++M SS   + D  T+++++ 
Sbjct: 383 LNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSS-GVKKDVVTYNALLD 441

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
               +GK +E   +F EM +    PNL   ++LI  Y K    ++ +       + G+  
Sbjct: 442 GYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKA 501

Query: 480 DDRFCGCLLNVM 491
           D      L+N +
Sbjct: 502 DVVLYSELINAL 513


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 145/564 (25%), Positives = 265/564 (46%), Gaps = 60/564 (10%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I +N  + V  +    + A  LF +ML RG++ D  T++TL+         + A +    
Sbjct: 292 ITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSE 351

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           MP     P+ +TYS++ID Y +AG ++ A  L++  +     +D  +++TL+ +Y   G 
Sbjct: 352 MPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGR 411

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F+  LNV +EM++ G+K + +TYN LL   G+  +  +VK +++EM    + PN  TY++
Sbjct: 412 FEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYST 471

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSS 404
           L+  Y +    ++ + V+RE K+ G++  V LY+ L+ A+C + G  + A    ++M + 
Sbjct: 472 LIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKN-GLVESAVSFLDEM-TK 529

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS------------- 451
           E  +P+  T++S+I      G+   AE     +++  +E N+  ++S             
Sbjct: 530 EGIRPNVVTYNSII---DAFGRSGSAEC----VIDPPYETNVSKMSSSSLKVVEDATESE 582

Query: 452 --------LIQCYGK--AQRTDD-------------VVRALNRLPELGITPDDRFCGCLL 488
                   +I+ +G+  A++T               ++   +++ EL I P+      +L
Sbjct: 583 VGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELDIKPNVVTFSAIL 642

Query: 489 NVMTQTPK-EELGKLVECVEK-SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--- 543
           N  ++    E+   L+E +    N   G    LL+   D   +   +A  LF+ + +   
Sbjct: 643 NACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYGD---NVWVQAQSLFDEVKQMDS 699

Query: 544 DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAAL 603
               A+ N L D+  +      A  ++  G    V+ ++ S S     L L  +S GAA 
Sbjct: 700 STASAFYNALTDMLWHFGQRRGAQLVVLEGKRRHVWENMWSNS----CLDLHLMSSGAAR 755

Query: 604 TALHIWINDLSKALESGEEFPPLLGINTGHGKHK--YSDKGLASVFESHLKELNAPFHDS 661
             +H W+ ++   +  G E P LL I TG GKH     D  L    E+ L  + APF  +
Sbjct: 756 AMVHAWLLNIRSIVFEGHELPQLLSILTGWGKHSKVVGDGALRRAIEALLTGMGAPFRVA 815

Query: 662 PDKVGWFLTTEAAAKSWLESRSSL 685
              +G F++T A   +WL    +L
Sbjct: 816 KCNLGRFISTGAVVAAWLRESGTL 839



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 155/305 (50%), Gaps = 6/305 (1%)

Query: 165 VILYNVTMKVFRKCR-DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++ YN  +    K   D ++A  +FD+ML  GV+PD +TF++L++      L   A   F
Sbjct: 255 LVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLF 314

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYG 281
             M   G + D  TY++++DA  + G +++AF +       +  I PN   +ST+I  Y 
Sbjct: 315 SEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEM--PRKHIMPNVVTYSTVIDGYA 372

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AG  D  LN++ EMK   +  + ++YN LL    +  R  +   + KEM  +G+  +  
Sbjct: 373 KAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAV 432

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +LL  YG+    E+   V+ EMK + +  ++  Y+TL+ + +  G   EA E+F + 
Sbjct: 433 TYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREF 492

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K +   + D   +S++I      G V  A +  +EM + G  PN+    S+I  +G++  
Sbjct: 493 KKA-GLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGS 551

Query: 462 TDDVV 466
            + V+
Sbjct: 552 AECVI 556



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 168/339 (49%), Gaps = 8/339 (2%)

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           S+MI   GR G VE+A  +++ A NE +     AFS LI  YG +G  D  + V+E MK+
Sbjct: 189 SAMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKS 248

Query: 299 IGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
            G+KPN++TYN ++D  G+    + +   I+ EM  NG+ P+  T+ SLL   GR    E
Sbjct: 249 SGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWE 308

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
              +++ EM  +G++  +  YNTLL      G  D AF+I  +M   ++  P+  T+S++
Sbjct: 309 AARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEM-PRKHIMPNVVTYSTV 367

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I   +  G++ EA  +FNEM  A    +     +L+  Y K  R ++ +     +   GI
Sbjct: 368 IDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGI 427

Query: 478 TPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536
             D      LL    +  K EE+ ++ E ++        +    L +   +G   +EA E
Sbjct: 428 KKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAME 487

Query: 537 LFNSISKDVKKA---YCNCLID-LCVNLNLLENACKLLE 571
           +F    K   KA     + LID LC N  L+E+A   L+
Sbjct: 488 VFREFKKAGLKADVVLYSALIDALCKN-GLVESAVSFLD 525



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 109/458 (23%), Positives = 210/458 (45%), Gaps = 24/458 (5%)

Query: 53  SSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSC 112
           +S  T  ++N  +P        KS +  +    R+++   K +  R     K AA     
Sbjct: 59  ASPATATNRNSNFPSLSPLPPSKSELTADFSGRRSTRFVSKMHFGR----PKTAAAARHT 114

Query: 113 SATEDDVFSVLRCLGDD---------FLEQDC-----VIILNNMTNPDTAALALTYF--- 155
           S  E+ +   +R   DD         F  + C       +L  + N    A A+  F   
Sbjct: 115 STAEEALRHAIRFASDDKGIDSVLLNFESRLCGSDDYTFLLRELGNRGEWAKAIRCFEFA 174

Query: 156 -TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
              + + +++  L +  + +  +   ++ A+ +F+  L+ G       FS LIS    + 
Sbjct: 175 VRREQRRNEQGKLASAMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSG 234

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG-NVEMAFGLYDRARNEKWRIDPNAF 273
             ++A++ FE M S G  P+ +TY+++IDA G+ G +   A  ++D       + D   F
Sbjct: 235 YCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITF 294

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           ++L+ + G  G ++   N++ EM   G++ ++ TYN LLD + +  +      I  EM  
Sbjct: 295 NSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPR 354

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
             + PN  TY++++  Y +A   ++ L+++ EMK   + L    YNTLL++ A +G  +E
Sbjct: 355 KHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEE 414

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A  + ++M+SS   + D+ T+++++     +GK  E + +F EM      PNL   ++LI
Sbjct: 415 ALNVCKEMESS-GIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLI 473

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
             Y K     + +       + G+  D      L++ +
Sbjct: 474 DVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDAL 511



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 156/317 (49%), Gaps = 2/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWF 223
           V  ++  +  + +    D+A ++F+ M   G+KP+ VT++ +I +C +     N+A E F
Sbjct: 220 VYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIF 279

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   G  PD +T++S++   GR G  E A  L+          D   ++TL+      
Sbjct: 280 DEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKG 339

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D    +  EM    + PN++TY+ ++D   +A R  +   ++ EM    +  +  +Y
Sbjct: 340 GQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSY 399

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +LL  Y +    E+ L+V +EM+  G++     YN LL      G  +E   +FE+MK+
Sbjct: 400 NTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKA 459

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            E   P+  T+S++I + S  G   EA  +F E  +AG + ++ + ++LI    K    +
Sbjct: 460 -ERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVE 518

Query: 464 DVVRALNRLPELGITPD 480
             V  L+ + + GI P+
Sbjct: 519 SAVSFLDEMTKEGIRPN 535



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 124/292 (42%), Gaps = 52/292 (17%)

Query: 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
           K+ + YN  +  + K    ++ +R+F++M    + P+ +T+STLI       L  +A+E 
Sbjct: 429 KDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEV 488

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F      G   D + YS++IDA  + G VE A    D    E  R +   ++++I  +G 
Sbjct: 489 FREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGR 548

Query: 283 AGNFD----------------GCLNVYEEM--KAIGVKPNMITYNNLLDTMGR--AKRPW 322
           +G+ +                  L V E+     +G K +    N ++   G+  A++  
Sbjct: 549 SGSAECVIDPPYETNVSKMSSSSLKVVEDATESEVGDKED----NQIIKIFGQLAAEKTC 604

Query: 323 QVK-------------TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
             K              ++ +M +  + PN  T++++L A  R    ED   +  E++  
Sbjct: 605 HAKKENRGRQEILCILAVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLEELRLF 664

Query: 370 GMQLSVTLYNTLLAMCADVGYTD----EAFEIFEDMKSSENCQPDSWTFSSM 417
             Q+    +  L+      GY D    +A  +F+++K     Q DS T S+ 
Sbjct: 665 DNQVYGVAHGLLM------GYGDNVWVQAQSLFDEVK-----QMDSSTASAF 705


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 140/555 (25%), Positives = 249/555 (44%), Gaps = 46/555 (8%)

Query: 151 ALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL  F   L+   S + I +N  +    +    ++ +R+F +M +RG+  D+VT++TLI+
Sbjct: 208 ALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIA 267

Query: 209 CARMNNLPNKAVEWFERMP-SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                   +      E M  S G +P  +TYS+MID Y + G    A  L+   RN+   
Sbjct: 268 TYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVE 327

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   ++T++ ++   GNFD   ++   M+  G   +++TYN LLD+ G+  +  +  ++
Sbjct: 328 PDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSL 387

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            +EM   G SPN  TY++L+ AY +  +  D +++++++K+ G+Q  V LY+TL+  C  
Sbjct: 388 LEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCK 447

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G  DEA  + E+M +    +P+  T++S++          +A      M+   F    F
Sbjct: 448 NGSPDEALALLEEM-ADNGIRPNVITYNSLL----------DAYGRQCLMVRKTFPKLRF 496

Query: 448 VLTSLIQCYGKAQRTDD----------------VVRALNRLPELGITPDDRFCGCLLNVM 491
            L   +    K    DD                  R    + + G+ P+      +LN  
Sbjct: 497 FLLPRVTMLLKPSMQDDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILNAC 556

Query: 492 TQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN---SISKDVKK 547
           +     E+   L+E +   + ++  V   LL    I     ++A  LFN   ++  +   
Sbjct: 557 SHCASVEDASNLLEAMRVFDGRVYGVTHGLLMGFRIR--VWRDAETLFNELTTLGHNTAV 614

Query: 548 AYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALH 607
           A+ N L D+  +    + A           V+      S  Q+ L L  +S+G+A   LH
Sbjct: 615 AFYNALTDVLWHFEQAQAAKD-------RHVWDKAWWHSEQQFFLDLHFMSVGSAQAMLH 667

Query: 608 IWINDLSKAL-ESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELNAPFHDSPDK 664
           +W+  + K L +     P  + I TG GKH     +  +    E+HL E+N+PFH   + 
Sbjct: 668 LWLLYIRKFLCQRRSVLPKYMSILTGWGKHSKVPGESAVKRAVEAHLLEMNSPFHVWGNN 727

Query: 665 VGWFLTTEAAAKSWL 679
            G  +      + WL
Sbjct: 728 EGRLVCAGYQVQGWL 742



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 162/352 (46%), Gaps = 9/352 (2%)

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           K+ +W     +     D +T S++I + GR G  + A  ++DRA    +  +   +S+LI
Sbjct: 104 KSFDWMVLQQNLRSQWDKVT-STIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLI 162

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             YG +G     + ++E MK +  KPN++ YN ++D   +         I++EM + G+S
Sbjct: 163 CAYGRSGKLAKAVEIFEAMKVV-CKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMS 221

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P+  T+ +L+ A GRA   E+   ++ EM+E+G+      YNTL+A     G       +
Sbjct: 222 PDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAAL 281

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            E M  S   +P   T+S+MI   +  G   EA A+F EM     EP+     +++  + 
Sbjct: 282 METMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHA 341

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 516
           +    D+       + E G   D      LL+   +  K  E   L+E +++  +    +
Sbjct: 342 RLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNIL 401

Query: 517 VKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 568
               L +   +  F ++A  LF    +DVKKA      D+ +   L++  CK
Sbjct: 402 TYSALIDAYCKHGFHRDAMALF----QDVKKA--GLQPDVVLYSTLVDGCCK 447



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 158/329 (48%), Gaps = 5/329 (1%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D A+ +FD  +  G   +   +S+LI     +    KAVE FE M    C P+ + Y+++
Sbjct: 137 DWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAMKVV-CKPNLVVYNAV 195

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           IDA  + G+   A  ++     +    D   F+TLI   G A  ++ C  ++ EM+  G+
Sbjct: 196 IDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGI 255

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMT-DNGLSPNWNTYASLLRAYGRARYGEDTL 360
             + +TYN L+ T  R  +      + + M   +G+ P+  TY++++  Y +     + +
Sbjct: 256 ARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAI 315

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
           ++++EM+ + ++     YNT++ + A +G  DEA  I   M+ +   + D  T+++++  
Sbjct: 316 ALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAK-DIVTYNALLDS 374

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              +GK  EA ++  EM + G  PN+   ++LI  Y K     D +     + + G+ PD
Sbjct: 375 YGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPD 434

Query: 481 DRFCGCLLN--VMTQTPKEELGKLVECVE 507
                 L++      +P E L  L E  +
Sbjct: 435 VVLYSTLVDGCCKNGSPDEALALLEEMAD 463



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 144/327 (44%), Gaps = 16/327 (4%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+AL           + I YN  + +  +  + D+A  +   M + G   D VT++ L+ 
Sbjct: 314 AIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLD 373

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    +A+   E M   G  P+ LTYS++IDAY + G    A  L+   +    + 
Sbjct: 374 SYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQP 433

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA-----KRPWQ 323
           D   +STL+      G+ D  L + EEM   G++PN+ITYN+LLD  GR      K   +
Sbjct: 434 DVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVRKTFPK 493

Query: 324 VKTIYKEMTDNGLSPNW-NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           ++          L P+  +   SL+    +         V+REM + G++ +V  ++++L
Sbjct: 494 LRFFLLPRVTMLLKPSMQDDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSIL 553

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS-SMITICSCRGKV-SEAEAMFNEMLEA 440
             C+     ++A  + E M+       D   +  +   +   R +V  +AE +FNE+   
Sbjct: 554 NACSHCASVEDASNLLEAMRVF-----DGRVYGVTHGLLMGFRIRVWRDAETLFNELTTL 608

Query: 441 GFEPNLF---VLTSLIQCYGKAQRTDD 464
           G    +     LT ++  + +AQ   D
Sbjct: 609 GHNTAVAFYNALTDVLWHFEQAQAAKD 635


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 145/587 (24%), Positives = 262/587 (44%), Gaps = 76/587 (12%)

Query: 165 VILYNVTMKVFRKC-RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++ YN  +    K   +  +  + FD+M   GV+PD +TF++L++      L   A   F
Sbjct: 303 LVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLF 362

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
           + M +   + D  +Y++++DA  + G +++AF +   A+    RI PN  ++ST+I  + 
Sbjct: 363 DEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEIL--AQMPVKRIMPNVVSYSTVIDGFA 420

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AG FD  LN++ EM+ +G+  + ++YN LL    +  R  +   I +EM   G+  +  
Sbjct: 421 KAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVV 480

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +LL  YG+    ++   V+ EMK + +  ++  Y+TL+   +  G   EA EIF + 
Sbjct: 481 TYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREF 540

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           KS+   + D   +S++I      G V  A ++ +EM + G  PN+    S+I  +G++  
Sbjct: 541 KSA-GLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSAT 599

Query: 462 TDDVV------------------------RALNRLPELGITPDDRFC----------GCL 487
            D                           R +    +L    ++R             C+
Sbjct: 600 MDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCI 659

Query: 488 LNVMTQTPK-----------------------EELGKLVECVEKSNSKL-GYVVKLLLEE 523
           L V  +  +                       E+   L+E +   ++K+ G V  LL+ +
Sbjct: 660 LEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMGQ 719

Query: 524 QDIEGDFKKEATELF---NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT 580
           ++   +   +A  LF   N +      A+ N L D+  +      A  +   G + +V+ 
Sbjct: 720 RE---NVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSRQVWE 776

Query: 581 DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHK--Y 638
           ++ S S     L L  +S GAA   +H W+ ++   +  G E P +L I TG GKH    
Sbjct: 777 NVWSDS----CLDLHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSKVV 832

Query: 639 SDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSL 685
            D  L    E  L+ ++APFH S   +G F ++ +   +WL   ++L
Sbjct: 833 GDGALRRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATWLRESATL 879



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 150/300 (50%), Gaps = 2/300 (0%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           ++A  +F+ M + G++P+ VT++ +I +C +      +  ++F+ M   G  PD +T++S
Sbjct: 285 EEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNS 344

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           ++    R G  E A  L+D   N +   D  +++TL+      G  D    +  +M    
Sbjct: 345 LLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKR 404

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           + PN+++Y+ ++D   +A R  +   ++ EM   G++ +  +Y +LL  Y +    E+ L
Sbjct: 405 IMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEAL 464

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            + REM   G++  V  YN LL      G  DE  ++F +MK  E+  P+  T+S++I  
Sbjct: 465 DILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMK-REHVLPNLLTYSTLIDG 523

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            S  G   EA  +F E   AG   ++ + ++LI    K       V  ++ + + GI+P+
Sbjct: 524 YSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPN 583



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/496 (22%), Positives = 212/496 (42%), Gaps = 48/496 (9%)

Query: 43  KRSVSLQETQSSNPTKHSQNPQYPHGKTGSS---------PKSYIWVNP----KSPRASK 89
           ++S       ++N  +  QNP Y H   G+S         P S   V P    + P  S 
Sbjct: 65  RQSTRFVSPATNNHRQTRQNPNYNHRPYGASSSPRGSAPPPSSVATVAPAQLSQPPNFSP 124

Query: 90  LKEKSYD----------TRYNSLV-----KLAADLDSCSATEDDVFSVLRCLGDDFL--- 131
           L+    D          TR+ S +     K        SA ED + + +   GDD +   
Sbjct: 125 LQTPKSDLSSDFSGRRSTRFVSKMHFGRQKTTMATRHSSAAEDALQNAIDFSGDDEMFHS 184

Query: 132 -----------EQDCVIILNNMTNPDTAALALTYFTNKLKASK----EVILYNVTMKVFR 176
                        DC  I+  + N +    A+ ++   +K  +    +  L +  +    
Sbjct: 185 LMLSFESKLCGSDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLG 244

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           +   +  A+R+F+     G       FS LIS    + L  +A+  F  M  +G  P+ +
Sbjct: 245 RYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLV 304

Query: 237 TYSSMIDAYGRAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           TY+++IDA G+ G   +     +D  +    + D   F++L+ +    G ++   N+++E
Sbjct: 305 TYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDE 364

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M    ++ ++ +YN LLD + +  +      I  +M    + PN  +Y++++  + +A  
Sbjct: 365 MTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGR 424

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            ++ L+++ EM+  G+ L    YNTLL++   VG ++EA +I  +M +S   + D  T++
Sbjct: 425 FDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREM-ASVGIKKDVVTYN 483

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           +++     +GK  E + +F EM      PNL   ++LI  Y K     + +         
Sbjct: 484 ALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSA 543

Query: 476 GITPDDRFCGCLLNVM 491
           G+  D      L++ +
Sbjct: 544 GLRADVVLYSALIDAL 559



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 161/339 (47%), Gaps = 8/339 (2%)

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           S+MI   GR G V +A  +++ A    +     AFS LI  YG +G  +  ++V+  MK 
Sbjct: 237 SAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE 296

Query: 299 IGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
            G++PN++TYN ++D  G+    + QV   + EM  NG+ P+  T+ SLL    R    E
Sbjct: 297 YGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWE 356

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
              +++ EM  + ++  V  YNTLL      G  D AFEI   M   +   P+  ++S++
Sbjct: 357 AARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMP-VKRIMPNVVSYSTV 415

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I   +  G+  EA  +F EM   G   +     +L+  Y K  R+++ +  L  +  +GI
Sbjct: 416 IDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGI 475

Query: 478 TPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536
             D      LL    +  K +E+ K+   +++ +     +    L +   +G   KEA E
Sbjct: 476 KKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAME 535

Query: 537 LFNSISKDVKKA---YCNCLID-LCVNLNLLENACKLLE 571
           +F        +A     + LID LC N  L+ +A  L++
Sbjct: 536 IFREFKSAGLRADVVLYSALIDALCKN-GLVGSAVSLID 573


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 137/545 (25%), Positives = 250/545 (45%), Gaps = 26/545 (4%)

Query: 151 ALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL  F   L+   S + I +N  +    +    ++ +R+F +M +RG+  D+VT++TLI+
Sbjct: 209 ALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIA 268

Query: 209 CARMNNLPNKAVEWFERMP-SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                   +      E M  S G +P  +TYS+MID Y + G    A  L+   RN+   
Sbjct: 269 TYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVE 328

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   ++T++ ++   GNFD   ++   M+  G   +++TYN LLD+ G+  +  +  ++
Sbjct: 329 PDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSL 388

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            +EM   G SPN  TY++L+ AY +  +  D +++++++K+ G+Q  V LY+TL+  C  
Sbjct: 389 LEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCK 448

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-----TICSCRGKVSEAEAMFNEMLEAGF 442
            G  DEA  + E+M +    +P+  T++S++          R    +        +    
Sbjct: 449 NGSPDEALALLEEM-ADNGIRPNVITYNSLLDAYGRQCLMVRKNFPKLRFFLLPRVTMLL 507

Query: 443 EPNL-FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELG 500
           +P++ +   SL+    K        R    + + G+ P+      +LN  +     E+  
Sbjct: 508 KPSVDYDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILNACSHCASVEDAS 567

Query: 501 KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN---SISKDVKKAYCNCLIDLC 557
            L+E +   + ++  V   LL    I     ++A  LFN   ++  +   A+ N L D+ 
Sbjct: 568 SLLEAMRVFDGRVYGVTHGLLMGFRIR--VWRDAETLFNELTTLGHNTAVAFYNALTDVL 625

Query: 558 VNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKAL 617
            +    + A           V+      S  Q+ L L  +S+G+A   LH+W+  + K L
Sbjct: 626 WHFEQAKAAKD-------RHVWDKAWWHSEQQFFLDLHFMSVGSAQAMLHLWLLYIRKFL 678

Query: 618 -ESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAA 674
            +     P  + I TG GKH     +  +    E+HL E+N+PFH   +  G  +     
Sbjct: 679 CQRRSVLPKYMSILTGWGKHSKVPGESAVKRAVEAHLLEMNSPFHVWGNNEGRLVCAGYQ 738

Query: 675 AKSWL 679
            + WL
Sbjct: 739 VQGWL 743



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 162/352 (46%), Gaps = 9/352 (2%)

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           K+ +W     +     D +T S++I + GR G  + A  ++DRA    +  +   +S+LI
Sbjct: 105 KSFDWMVLQQNLRSQWDKVT-STIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLI 163

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             YG +G     + ++E MK +  KPN++ YN ++D   +         I++EM + G+S
Sbjct: 164 CAYGRSGKLAKAVEIFEAMKVV-CKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMS 222

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P+  T+ +L+ A GRA   E+   ++ EM+E+G+      YNTL+A     G       +
Sbjct: 223 PDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAAL 282

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            E M  S   +P   T+S+MI   +  G   EA A+F EM     EP+     +++  + 
Sbjct: 283 METMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHA 342

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 516
           +    D+       + E G   D      LL+   +  K  E   L+E +++  +    +
Sbjct: 343 RLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNIL 402

Query: 517 VKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 568
               L +   +  F ++A  LF    +DVKKA      D+ +   L++  CK
Sbjct: 403 TYSALIDAYCKHGFHRDAMALF----QDVKKA--GLQPDVVLYSTLVDGCCK 448



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 158/329 (48%), Gaps = 5/329 (1%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D A+ +FD  +  G   +   +S+LI     +    KAVE FE M    C P+ + Y+++
Sbjct: 138 DWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAMKVV-CKPNLVVYNAV 196

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           IDA  + G+   A  ++     +    D   F+TLI   G A  ++ C  ++ EM+  G+
Sbjct: 197 IDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGI 256

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMT-DNGLSPNWNTYASLLRAYGRARYGEDTL 360
             + +TYN L+ T  R  +      + + M   +G+ P+  TY++++  Y +     + +
Sbjct: 257 ARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAI 316

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
           ++++EM+ + ++     YNT++ + A +G  DEA  I   M+ +   + D  T+++++  
Sbjct: 317 ALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAK-DIVTYNALLDS 375

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              +GK  EA ++  EM + G  PN+   ++LI  Y K     D +     + + G+ PD
Sbjct: 376 YGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPD 435

Query: 481 DRFCGCLLN--VMTQTPKEELGKLVECVE 507
                 L++      +P E L  L E  +
Sbjct: 436 VVLYSTLVDGCCKNGSPDEALALLEEMAD 464



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 118/260 (45%), Gaps = 6/260 (2%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+AL           + I YN  + +  +  + D+A  +   M + G   D VT++ L+ 
Sbjct: 315 AIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLD 374

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    +A+   E M   G  P+ LTYS++IDAY + G    A  L+   +    + 
Sbjct: 375 SYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQP 434

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA-----KRPWQ 323
           D   +STL+      G+ D  L + EEM   G++PN+ITYN+LLD  GR      K   +
Sbjct: 435 DVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVRKNFPK 494

Query: 324 VKTIYKEMTDNGLSPNWN-TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           ++          L P+ +    SL+    +         V+REM + G++ +V  ++++L
Sbjct: 495 LRFFLLPRVTMLLKPSVDYDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSIL 554

Query: 383 AMCADVGYTDEAFEIFEDMK 402
             C+     ++A  + E M+
Sbjct: 555 NACSHCASVEDASSLLEAMR 574


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 139/551 (25%), Positives = 262/551 (47%), Gaps = 42/551 (7%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I +N  + V  +    + A  LFD+M +R ++ D  +++TL+         + A E   +
Sbjct: 340 ITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQ 399

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           MP+    P+ ++YS++ID + +AG  + A  L+   R     +D  +++TL+ +Y   G 
Sbjct: 400 MPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGR 459

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  L++  EM ++G+K +++TYN LL   G+  +  +VK ++ EM    + PN  TY++
Sbjct: 460 SEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYST 519

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSS 404
           L+  Y +    ++ + V+RE K  G++  V LY+ L+ A+C + G    A  + ++M + 
Sbjct: 520 LIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKN-GLVGSAVSLIDEM-TK 577

Query: 405 ENCQPDSWTFSSMITIC------------SCRGKVSEAEAMFNEMLEAGFEPNLFV-LTS 451
           E   P+  T++S+I               S  G +  + +  +E+ E   E N  + L  
Sbjct: 578 EGISPNVVTYNSIIDAFGRSATMERSADYSNGGSLPFSSSALSELTET--EGNRVIQLFG 635

Query: 452 LIQCYGKAQRTDD----------VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELG 500
            +   G  + T D          ++    ++ +L I P+      +LN  ++    E+  
Sbjct: 636 QLTSEGNNRMTKDCKEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDAS 695

Query: 501 KLVECVEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELF---NSISKDVKKAYCNCLIDL 556
            L+E +   ++K+ G V  LL+ +++   +   +A  LF   N +      A+ N L D+
Sbjct: 696 MLLEELRLFDNKVYGVVHGLLMGQRE---NVWLQAQSLFDKVNEMDGSTASAFYNALTDM 752

Query: 557 CVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA 616
             +      A  +   G + +V+ ++ S S     L L  +S GAA   +H W+ ++   
Sbjct: 753 LWHFGQKRGAELVALEGRSRQVWENVWSDS----CLDLHLMSSGAARAMVHAWLLNIRSI 808

Query: 617 LESGEEFPPLLGINTGHGKHK--YSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAA 674
           +  G E P +L I TG GKH     D  L    E  L+ ++APFH S   +G F ++ + 
Sbjct: 809 VYEGHELPKVLSILTGWGKHSKVVGDGALKRAVEVLLRGMDAPFHLSKCNMGRFTSSGSV 868

Query: 675 AKSWLESRSSL 685
             +WL   ++L
Sbjct: 869 VATWLRESATL 879



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 141/612 (23%), Positives = 250/612 (40%), Gaps = 96/612 (15%)

Query: 43  KRSVSLQETQSSNPTKHSQNPQYPHGKTGSS---------PKSYIWVNP----KSPRASK 89
           ++S     T ++N  +  QNP Y H   G S         P S   V P    ++P  S 
Sbjct: 65  RQSTRFVSTTTNNHRQTRQNPNYNHRPYGVSSSPRGSAPPPSSVATVAPAQLSQTPNFSP 124

Query: 90  LKEKSYD----------TRYNSLV-----KLAADLDSCSATEDDVFSVLRCLGDDFL--- 131
           L+    D          TR+ S +     K        SA ED + + +   GDD +   
Sbjct: 125 LQTPKSDLSSDFSGRRSTRFVSKMHFGRPKTTMATRHSSAAEDALQNAIDFSGDDEMFHS 184

Query: 132 -----------EQDCVIILNNMTNPDTAALALTYFTNKLKASK----EVILYNVTMKVFR 176
                        DC  I+  + N      A+ ++   +K  +    +  L +  +    
Sbjct: 185 LMLSFESKLCGSDDCTYIIRELGNRGECDKAVGFYEFAVKRERRKNEQGKLASAMISTLG 244

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           +   +  A+R+F+     G       FS LIS    + L  +A+  F  M  +G  P+ +
Sbjct: 245 RYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLV 304

Query: 237 TYSSMIDAYGRAG-------------------------NVEMAF----GLYDRARN---- 263
           TY+++IDA G+ G                         N  +A     GL++ ARN    
Sbjct: 305 TYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDE 364

Query: 264 -EKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
               RI+ + FS  TL+      G  D    +  +M A  + PN+++Y+ ++D   +A R
Sbjct: 365 MSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGR 424

Query: 321 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 380
             +   ++ EM    ++ +  +Y +LL  Y +    E+ L + REM   G++  V  YN 
Sbjct: 425 FDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNA 484

Query: 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
           LL      G  DE  ++F +MK  E+  P+  T+S++I   S  G   EA  +F E   A
Sbjct: 485 LLGGYGKQGKYDEVKKVFAEMK-REHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSA 543

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
           G   ++ + ++LI    K       V  ++ + + GI+P+      +++   ++   E  
Sbjct: 544 GLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATME-- 601

Query: 501 KLVECVEKSN-SKLGYVVKLLLEEQDIEGD-----FKKEATELFNSISKDVKKAY--CNC 552
                 + SN   L +    L E  + EG+     F +  +E  N ++KD K+     +C
Sbjct: 602 ---RSADYSNGGSLPFSSSALSELTETEGNRVIQLFGQLTSEGNNRMTKDCKEGMQELSC 658

Query: 553 LIDLCVNLNLLE 564
           ++++   ++ LE
Sbjct: 659 ILEVFRKMHQLE 670



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 161/339 (47%), Gaps = 8/339 (2%)

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           S+MI   GR G V +A  +++ A +  +     AFS LI  YG +G  +  ++V+  MK 
Sbjct: 237 SAMISTLGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE 296

Query: 299 IGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
            G++PN++TYN ++D  G+    + QV   + EM  N + P+  T+ SLL    R    E
Sbjct: 297 YGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWE 356

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
              +++ EM  + ++  V  YNTLL      G  D AFEI   M  ++   P+  ++S++
Sbjct: 357 AARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMP-AKRIMPNVVSYSTV 415

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I   +  G+  EA  +F EM       +     +L+  Y K  R+++ +  L  +  +GI
Sbjct: 416 IDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGI 475

Query: 478 TPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536
             D      LL    +  K +E+ K+   +++ +     +    L +   +G   KEA E
Sbjct: 476 KKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAME 535

Query: 537 LFNSISKDVKKA---YCNCLID-LCVNLNLLENACKLLE 571
           +F        +A     + LID LC N  L+ +A  L++
Sbjct: 536 VFREFKSAGLRADVVLYSALIDALCKN-GLVGSAVSLID 573


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 173/353 (49%), Gaps = 36/353 (10%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + + YN  + V+ K     +A ++ ++M+  G  P  VT+++LIS    + + ++A+E
Sbjct: 311 SYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAME 370

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
              +M   G  PD  TY++++  + RAG VE A  +++  RN   + +   F+  IK+YG
Sbjct: 371 LKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYG 430

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G F   + +++E+   G+ P+++T+N LL   G+     +V  ++KEM   G  P   
Sbjct: 431 NRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERE 490

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+ +L+ AY R    E  ++VYR M + G+   ++ YNT+LA  A  G  +++ ++  +M
Sbjct: 491 TFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM 550

Query: 402 KSSENCQPDSWTFSS-----------------------------------MITICSCRGK 426
           +    C+P+  T+ S                                   ++ +CS    
Sbjct: 551 EDGR-CKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDL 609

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           + EAE  F+E+ E GF P++  L S++  YG+ Q        L+ + E G TP
Sbjct: 610 LPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTP 662



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 160/325 (49%), Gaps = 2/325 (0%)

Query: 170 VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
           + + +  K   +  A  +F+ + + G   D  ++++LIS    +    +AV  F++M   
Sbjct: 178 IIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEED 237

Query: 230 GCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
           GC P  +TY+ +++ +G+ G        L ++ +++    D   ++TLI           
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
              V+EEMKA G   + +TYN LLD  G++ RP +   +  EM  NG SP+  TY SL+ 
Sbjct: 298 AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLIS 357

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           AY R    ++ + +  +M EKG +  V  Y TLL+     G  + A  IFE+M+++  C+
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNA-GCK 416

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           P+  TF++ I +   RGK +E   +F+E+   G  P++    +L+  +G+     +V   
Sbjct: 417 PNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGV 476

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQ 493
              +   G  P+      L++  ++
Sbjct: 477 FKEMKRAGFVPERETFNTLISAYSR 501



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 163/339 (48%), Gaps = 40/339 (11%)

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           +L  +A +WF +   +    D    + +I   G+ G V  A  +++  + + + +D  ++
Sbjct: 152 DLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSY 211

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMT 332
           ++LI  +  +G +   +NV+++M+  G KP +ITYN +L+  G+   PW ++ ++ ++M 
Sbjct: 212 TSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMK 271

Query: 333 DNGLSPN---WN--------------------------------TYASLLRAYGRARYGE 357
            +G++P+   +N                                TY +LL  YG++   +
Sbjct: 272 SDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPK 331

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           + + V  EM   G   S+  YN+L++  A  G  DEA E+   M + +  +PD +T++++
Sbjct: 332 EAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQM-AEKGTKPDVFTYTTL 390

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           ++     GKV  A ++F EM  AG +PN+    + I+ YG   +  ++++  + +   G+
Sbjct: 391 LSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGL 450

Query: 478 TPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYV 516
           +PD      LL V  Q     +   V  V K   + G+V
Sbjct: 451 SPDIVTWNTLLAVFGQN---GMDSEVSGVFKEMKRAGFV 486



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 146/325 (44%), Gaps = 13/325 (4%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +++ +N  + VF +     +   +F +M   G  P+  TF+TLIS         +A+ 
Sbjct: 451 SPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMT 510

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKL 279
            + RM   G  PD  TY++++ A  R G  E +  +   A  E  R  PN   + +L+  
Sbjct: 511 VYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVL--AEMEDGRCKPNELTYCSLLHA 568

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           Y          ++ EE+ +  ++P  +    L+    +     + +  + E+ + G SP+
Sbjct: 569 YANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPD 628

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM---CADVGYTDEAF- 395
             T  S++  YGR +       V   MKE+G   S+  YN+L+ M    AD G ++E   
Sbjct: 629 ITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILR 688

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           EI      ++  +PD  +++++I       ++ +A  +F+EM  +G  P++    + I  
Sbjct: 689 EIL-----AKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGS 743

Query: 456 YGKAQRTDDVVRALNRLPELGITPD 480
           Y      ++ +  +  + + G  P+
Sbjct: 744 YAADSMFEEAIGVVRYMIKHGCRPN 768



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 116/245 (47%), Gaps = 2/245 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFE 224
           + Y   +  +   +++     L +++    ++P  V   TL+  C++ + LP +A   F 
Sbjct: 560 LTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLP-EAERAFS 618

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G  PD  T +SM+  YGR   V  A G+ D  +   +      +++L+ ++  + 
Sbjct: 619 ELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSA 678

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           +F     +  E+ A G+KP++I+YN ++    R  R      I+ EM ++G+ P+  TY 
Sbjct: 679 DFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYN 738

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           + + +Y      E+ + V R M + G + +   YN+++     +   DEA    ED+++ 
Sbjct: 739 TFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNL 798

Query: 405 ENCQP 409
           +   P
Sbjct: 799 DPHAP 803



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 4/109 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I YN  +  + +   +  A R+F +M + G+ PD +T++T I     +++  +A+   
Sbjct: 698 DIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVV 757

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
             M   GC P+  TY+S++D Y +    + A    +  RN    +DP+A
Sbjct: 758 RYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRN----LDPHA 802



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 15/198 (7%)

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL-SVYREMKEKGMQL 373
           +G+++ P     + K  + +GLSP       +LR+     +    L SV  E+ E     
Sbjct: 78  IGKSRDP----NLGKPWSYHGLSPQGQ---QVLRSLIEPNFDSGQLDSVLSELFEPFKDK 130

Query: 374 SVTLYNTLLAMCADVGYT---DEAFEIFEDMKSSENCQP--DSWTFSSMITICSCRGKVS 428
             +  + LLA    +G+    D A   F+     ++ Q   D+   + +I++    G+VS
Sbjct: 131 PESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVS 190

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
            A  MFN + E GF  +++  TSLI  +  + R  + V    ++ E G  P       +L
Sbjct: 191 SAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVIL 250

Query: 489 NVMTQ--TPKEELGKLVE 504
           NV  +  TP  ++  LVE
Sbjct: 251 NVFGKMGTPWNKITSLVE 268


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 172/353 (48%), Gaps = 36/353 (10%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + + YN  + V+ K     +A ++ ++M   G  P  VT+++LIS    + + ++A+E
Sbjct: 311 SHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAME 370

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
              +M   G  PD  TY++++  + RAG VE A  +++  RN   + +   F+  IK+YG
Sbjct: 371 LKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYG 430

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G F   + +++E+   G+ P+++T+N LL   G+     +V  ++KEM   G  P   
Sbjct: 431 NRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERE 490

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+ +L+ AY R    E  ++VYR M + G+   ++ YNT+LA  A  G  +++ ++  +M
Sbjct: 491 TFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM 550

Query: 402 KSSENCQPDSWTFSS-----------------------------------MITICSCRGK 426
           +    C+P+  T+ S                                   ++ +CS    
Sbjct: 551 EDGR-CKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDL 609

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           + EAE  F+E+ E GF P++  L S++  YG+ Q        L+ + E G TP
Sbjct: 610 LPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTP 662



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 159/325 (48%), Gaps = 2/325 (0%)

Query: 170 VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
           + + +  K   +  A  LF+ + + G   D  ++++LIS    +    +AV  F++M   
Sbjct: 178 IVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEE 237

Query: 230 GCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
           GC P  +TY+ +++ +G+ G        L ++ +++    D   ++TLI           
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
              V+EEMKA G   + +TYN LLD  G++ RP +   +  EM  NG SP+  TY SL+ 
Sbjct: 298 AAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLIS 357

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           AY R    ++ + +  +M EKG +  V  Y TLL+     G  + A  IFE+M+++  C+
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNA-GCK 416

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           P+  TF++ I +   RGK  +   +F+E+   G  P++    +L+  +G+     +V   
Sbjct: 417 PNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGV 476

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQ 493
              +   G  P+      L++  ++
Sbjct: 477 FKEMKRAGFVPERETFNTLISAYSR 501



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 154/334 (46%), Gaps = 40/334 (11%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A +WF +   +    D    + +I   G+ G V  A  L++  + + + +D  ++++LI 
Sbjct: 157 AFDWFMKQKDYQSMLDNSVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLIS 216

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW---------------- 322
            +  +G +   +NV+++M+  G KP +ITYN +L+  G+   PW                
Sbjct: 217 AFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIA 276

Query: 323 --------------------QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
                               +   +++EM   G S +  TY +LL  YG++   ++ + V
Sbjct: 277 PDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKV 336

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
             EM+  G   S+  YN+L++  A  G  DEA E+   M + +  +PD +T++++++   
Sbjct: 337 LNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQM-AEKGTKPDVFTYTTLLSGFE 395

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
             GKV  A  +F EM  AG +PN+    + I+ YG   +  D+++  + +   G++PD  
Sbjct: 396 RAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIV 455

Query: 483 FCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYV 516
               LL V  Q     +   V  V K   + G+V
Sbjct: 456 TWNTLLAVFGQN---GMDSEVSGVFKEMKRAGFV 486



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 157/355 (44%), Gaps = 44/355 (12%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +  +N  +K++          ++FD++   G+ PD VT++TL++    N + ++    F+
Sbjct: 419 ICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFK 478

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  P+  T++++I AY R G+ E A  +Y R  +     D + ++T++      G
Sbjct: 479 EMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGG 538

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-------------------RPWQVK 325
            ++    V  EM+    KPN +TY +LL      K                   R   +K
Sbjct: 539 MWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLK 598

Query: 326 TI----------------YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
           T+                + E+ + G SP+  T  S++  YGR +       V   MKE+
Sbjct: 599 TLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKER 658

Query: 370 GMQLSVTLYNTLLAM---CADVGYTDEAF-EIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           G   S+  YN+L+ M    AD G ++E   EI      ++  +PD  +++++I       
Sbjct: 659 GFTPSMATYNSLMYMHSRSADFGKSEEILREIL-----AKGIKPDIISYNTVIYAYCRNT 713

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           ++ +A  +F+EM ++G  P++    + I  Y      ++ +  +  + + G  P+
Sbjct: 714 RMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPN 768



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 115/245 (46%), Gaps = 2/245 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFE 224
           + Y   +  +   +++     L +++    ++P  V   TL+  C++ + LP +A   F 
Sbjct: 560 LTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLP-EAERAFS 618

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G  PD  T +SM+  YGR   V  A  + D  +   +      +++L+ ++  + 
Sbjct: 619 ELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSA 678

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           +F     +  E+ A G+KP++I+YN ++    R  R      I+ EM D+G+ P+  TY 
Sbjct: 679 DFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYN 738

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           + + +Y      E+ + V R M + G + +   YN+++     +   DEA    ED+++ 
Sbjct: 739 TFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNL 798

Query: 405 ENCQP 409
           +   P
Sbjct: 799 DPHAP 803



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 4/109 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I YN  +  + +   +  A R+F +M D G+ PD +T++T I     +++  +A+   
Sbjct: 698 DIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVV 757

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
             M   GC P+  TY+S++D Y +    + A    +  RN    +DP+A
Sbjct: 758 RYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRN----LDPHA 802


>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 779

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 139/539 (25%), Positives = 237/539 (43%), Gaps = 24/539 (4%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
           N+     + I YN  + ++ +    +    L  +M   G  PD V ++ LI         
Sbjct: 207 NEAGVVPDSITYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKY 266

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
             A + F++M   GC PD +T+S++++AYG+ G  +    L+   +      D N ++TL
Sbjct: 267 RAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTL 326

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           I+++G  G F   +N++ ++   GV+P+M TY  LL + G+       K I++ M  + +
Sbjct: 327 IQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYV 386

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
           +P  + +  L+ AYG A    +    +  MKE G +  +  YN L+   A  G   EA  
Sbjct: 387 TPTTDGFTGLITAYGNAALYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGLYCEAGS 446

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
            +  M   E    D  T++S+I      G   +A     +M EA   PN     +L+  Y
Sbjct: 447 AYLTM-IDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEALMGVY 505

Query: 457 GKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSN--SK 512
             A   D+       L   G  P  D +C  LL+V  +  + ++  K++E + + N  S 
Sbjct: 506 CTAGLFDEAKAQFLDLQVGGELPSVDSYC-LLLSVCARRNRWDDASKVLEEMLEPNMPSI 564

Query: 513 LGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKA---YCNCLIDLCVNLNLLENACKL 569
            G V  +L  E D +G   +     F+ +  D   +   + N L++    L   E AC++
Sbjct: 565 YGVVGGILKGEMD-DGTNWQRVEYAFDGLKVDGVGSNLRFYNALLEALWCLGQRERACRV 623

Query: 570 LELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGI 629
                   V  +  SRS   W++ +  +S+GAA+T L +W+ D+   +++   FPPLL I
Sbjct: 624 FAEARKRGVLAEAFSRSDLMWAIDVHRMSVGAAMTTLIVWLADMKAEIDNKSTFPPLLSI 683

Query: 630 NTGHGKHKYSDKG---------LASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWL 679
            T     K+ DK           A      L  + APF  +    G  +T     + WL
Sbjct: 684 VT-----KWGDKDPNRDLKSLPAARAILGGLAAIGAPFDFAEWNEGRIITWAPVLQKWL 737



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 155/323 (47%), Gaps = 3/323 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y + + +  +   LDKA  LF+DM    V+ +  +F+ LI+    N     ++    RM
Sbjct: 76  VYTIMIGIMGREGMLDKASELFEDMPLNDVEWNVYSFTALINAYGRNGQHEASLHLLARM 135

Query: 227 PSFGCDPDALTYSSMIDAYGRAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
                 P+ +TY+++I+A  + G   E   GL+ + R+E  + D   ++TL+    + G 
Sbjct: 136 KREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEGIQPDIITYNTLLSACSSRGL 195

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    V+  M   GV P+ ITYN L+D  G+A R   V  + +EM   G +P+   Y  
Sbjct: 196 VEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYNI 255

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ AYGRA        ++++M+E G    V  ++TLL      G  DE   +F DMK   
Sbjct: 256 LIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMK-ER 314

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +PD  T++++I +    G   E+  +F ++L+ G EP++     L+   GK       
Sbjct: 315 GTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAA 374

Query: 466 VRALNRLPELGITP-DDRFCGCL 487
            +    + +  +TP  D F G +
Sbjct: 375 KKIHRHMLQSYVTPTTDGFTGLI 397



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 108/216 (50%), Gaps = 3/216 (1%)

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           ++  N FS + + +    ++   L +++ M +    KPN   Y  ++  MGR     +  
Sbjct: 35  KLTINDFSLIFREFAQRSDWQKALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKAS 94

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            ++++M  N +  N  ++ +L+ AYGR    E +L +   MK + +  ++  YNT++  C
Sbjct: 95  ELFEDMPLNDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINAC 154

Query: 386 ADVGYTDEA-FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
           A  G   E    +F  M+  E  QPD  T++++++ CS RG V EA  +F  M EAG  P
Sbjct: 155 AKGGLEWEGLLGLFAQMR-HEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVP 213

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +     +L+  YG+A R + V   L  + + G  PD
Sbjct: 214 DSITYNALVDIYGQADRHEGVGELLREMEQAGNAPD 249



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 59/120 (49%)

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
           S+ + M+    +L++  ++ +    A      +A  +F+ M+  + C+P+   ++ MI I
Sbjct: 24  SIAKTMEGYRNKLTINDFSLIFREFAQRSDWQKALRLFKYMQRHQWCKPNEHVYTIMIGI 83

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               G + +A  +F +M     E N++  T+LI  YG+  + +  +  L R+    +TP+
Sbjct: 84  MGREGMLDKASELFEDMPLNDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPN 143


>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 560

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/543 (22%), Positives = 234/543 (43%), Gaps = 47/543 (8%)

Query: 148 AALALTYF---TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFS 204
           + LAL +F     +     +V  Y   + +  + R+ +   RL  +M   G +P  VT++
Sbjct: 47  SGLALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYN 106

Query: 205 TLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
            LI      N   +A+  F +M   GC PD +TY +++D + +AG  + A  +Y + +  
Sbjct: 107 RLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQA 166

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
            ++ D   +S +I   G AG     L ++EEM   G  P+++TYN ++D   ++      
Sbjct: 167 GFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMA 226

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
             +Y +M D G  P+  TY+ ++   G+  + ++   ++ EM++ G      +Y  ++ M
Sbjct: 227 MKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDM 286

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
                  + A E               W                     + +ML++G  P
Sbjct: 287 WGKARNAERALE---------------W---------------------YQKMLDSGLTP 310

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVE 504
           N+ +  SL+  Y + Q+ D     +  +   G+ P  +    LL+  T + +    ++V 
Sbjct: 311 NVQISNSLLGSYLRMQQFDLAFGVIETMKAWGLVPTLQTHTILLSSCTASAQHH--QVVN 368

Query: 505 CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS---KDVKKAYCNCLIDLCVNLN 561
            + +S+  +   V  LL  Q    + K      F S+     D K+ + + LI+   NL 
Sbjct: 369 LMHRSSETVYSFVCTLLLRQLPPQELKHIVQHFFESLHGEEHDCKRGFTDSLIEFLHNLE 428

Query: 562 LLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESG 620
               A  + E+G    +Y   ++ ++  Q+S++L  +S+G AL AL   +++  + +   
Sbjct: 429 RRPEAGLVWEVGREHNLYPQAVRMKANNQYSINLHVMSMGTALVALSRTLSEFREKMLYT 488

Query: 621 EEFPPLLGINTGHGKHKYSDKG--LASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSW 678
              P  + I TG GKH        +    ++ L  L +PF+     VG F++     ++W
Sbjct: 489 GVAPERIEIITGWGKHSRVPGASLVRQAVQNLLTALGSPFYVESSNVGCFVSHGKPLQNW 548

Query: 679 LES 681
           L  
Sbjct: 549 LHQ 551



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 121/259 (46%), Gaps = 6/259 (2%)

Query: 133 QDCVIILNNM------TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAER 186
           + CV+  N +       N    A+ + Y   +   S + + Y   + +  K    D A  
Sbjct: 99  EPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMD 158

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           ++  M   G +PD  T+S +I C       ++A++ FE M   G  P  +TY+ +ID   
Sbjct: 159 MYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQA 218

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           ++GN  MA  LY+  ++  +  D   +S ++++ G  G+      ++ EM+  G  P+  
Sbjct: 219 KSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAP 278

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
            Y  ++D  G+A+   +    Y++M D+GL+PN     SLL +Y R +  +    V   M
Sbjct: 279 IYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQFDLAFGVIETM 338

Query: 367 KEKGMQLSVTLYNTLLAMC 385
           K  G+  ++  +  LL+ C
Sbjct: 339 KAWGLVPTLQTHTILLSSC 357


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 126/476 (26%), Positives = 215/476 (45%), Gaps = 66/476 (13%)

Query: 48  LQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRA-SKLKEKSYDT-RYNSLVKL 105
           L +  SS P  H  +P      T  +P+S   ++P++ R    L   S+D+ R++ ++ L
Sbjct: 42  LNQNHSSTPHLH-LSPS-----THRTPRSPHRLSPQAHRILQTLIHPSFDSNRFHEILPL 95

Query: 106 AADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEV 165
             D  S S+   D+  +++ LG            NN  +     LAL+ F      +  V
Sbjct: 96  LFDQPSSSSLSWDILGIIKGLG-----------FNNKFD-----LALSLFDFIRTRNDRV 139

Query: 166 ILYN-----VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
            L N     V + +  K   + +A  L  ++   G + D   +++LI+    N     A+
Sbjct: 140 SLLNGSVIAVIVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDAL 199

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           + F +M   GC+P  +TY+++++ YG+ G        L    +      D   ++TLI  
Sbjct: 200 KVFGKMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISC 259

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
                 ++  L+++EE+K  G +P+ +TYN LLD  G+++RP +   + K+M  N   P+
Sbjct: 260 CRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPS 319

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY SL+ AY R    ED L + R+M +KG++  V  Y TLL+   + G  + A E+FE
Sbjct: 320 VVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFE 379

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKV-------------------------------- 427
           +M+    C+P+  TF+++I +   RGK                                 
Sbjct: 380 EMRKV-GCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQN 438

Query: 428 ---SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              SE   +F EM  + F P      +LI  YG+    D  + A  R+ E G++PD
Sbjct: 439 GMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPD 494



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 162/327 (49%), Gaps = 1/327 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + YN  + V+ K R   +A  +   M     +P  VT+++L+S      L   A+   
Sbjct: 284 DAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLK 343

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M   G  PD  TY++++  +  AG  E+A  +++  R    + +   F+ LIK+YG  
Sbjct: 344 RKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDR 403

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G F+  + V++E+K     P+++T+N LL   G+     +V  +++EM  +  +P  +T+
Sbjct: 404 GKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTF 463

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ AYGR    +  ++ Y+ M E G+   ++ YN +LA  A  G  +++ ++  +MK 
Sbjct: 464 NTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKD 523

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
              C+P+  T+SS++   +   +V    A+  E+     + +  +L +L+    K     
Sbjct: 524 G-GCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLV 582

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNV 490
           +  RA     + GI+PD      +L++
Sbjct: 583 ETERAFLEFRKRGISPDVTTSNAMLSI 609



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 114/431 (26%), Positives = 200/431 (46%), Gaps = 26/431 (6%)

Query: 165 VILYNVTMKVFRKC-RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +I YN  + V+ K      K   L  DM   G+ PD  T++TLISC R  +L  +A++ F
Sbjct: 214 LITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLF 273

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E +   G  PDA+TY++++D YG++   + A  +  +  +  +R     +++L+  Y   
Sbjct: 274 EEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRG 333

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +  L +  +M   G+KP++ TY  LL     A +      +++EM   G  PN  T+
Sbjct: 334 GLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTF 393

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L++ YG     E+ + V++E+K       +  +NTLLA+    G   E   +FE+MK 
Sbjct: 394 NALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKR 453

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S    P+  TF+++I+     G   +A A +  MLEAG  P+L    +++    +    +
Sbjct: 454 SR-FAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWE 512

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV------ 516
              + L  + + G  P++     LL+      + E +  L E +     K   V      
Sbjct: 513 QSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLV 572

Query: 517 -----VKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLL- 570
                V LL+E +    +F+K        IS DV  +  N ++ +     ++  A ++L 
Sbjct: 573 LVNSKVDLLVETERAFLEFRKRG------ISPDVTTS--NAMLSIYGRKKMVPKANEILN 624

Query: 571 ---ELGLTLEV 578
              E GLTL +
Sbjct: 625 FMYESGLTLSL 635



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 162/380 (42%), Gaps = 17/380 (4%)

Query: 98  RYNSLVKLAADLDSCSATEDDVF--SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYF 155
           ++  +VK+  ++  C  + D V   ++L   G + ++ +   +   M             
Sbjct: 405 KFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEM------------- 451

Query: 156 TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
             + + + E   +N  +  + +C   D+A   +  ML+ GV PD  T++ +++      L
Sbjct: 452 -KRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGL 510

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
             ++ +    M   GC P+ +TYSS++ AY     VE    L +   +   +       T
Sbjct: 511 WEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKT 570

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           L+ +             + E +  G+ P++ T N +L   GR K   +   I   M ++G
Sbjct: 571 LVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESG 630

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           L+ +  +Y SL+  Y R      +  ++RE+ +KG++  V  YN ++         DEA 
Sbjct: 631 LTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAK 690

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            I E+MK      PD  T+++ I   +      EA  +   M++ G +PN     S++  
Sbjct: 691 RIIEEMKVPAPV-PDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDW 749

Query: 456 YGKAQRTDDVVRALNRLPEL 475
           Y K +  D+    +  L +L
Sbjct: 750 YCKLKLRDEACSFVQNLGDL 769



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/387 (21%), Positives = 165/387 (42%), Gaps = 10/387 (2%)

Query: 99  YNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDC---VIILNNMTNPDTAALALTYF 155
           YNSLV             +D   + R + D  ++ D      +L+   N     LA+  F
Sbjct: 323 YNSLVSAYVR----GGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVF 378

Query: 156 --TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
               K+     +  +N  +K++      ++  ++F ++      PD VT++TL++    N
Sbjct: 379 EEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQN 438

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
            + ++    FE M      P+  T++++I AYGR G+ + A   Y R        D + +
Sbjct: 439 GMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTY 498

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           + ++      G ++    V  EMK  G KPN +TY++LL      +   ++  + +E+  
Sbjct: 499 NAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYS 558

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
             +  +     +L+    +     +T   + E +++G+   VT  N +L++        +
Sbjct: 559 GTIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPK 618

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A EI   M  S        +++S++ + S      ++E +F E+L+ G EP++     +I
Sbjct: 619 ANEILNFMYES-GLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVI 677

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPD 480
             Y +    D+  R +  +      PD
Sbjct: 678 YAYCRNDMMDEAKRIIEEMKVPAPVPD 704



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 96/228 (42%), Gaps = 6/228 (2%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALA   ++  +K     +L    + V  K   L + ER F +   RG+ PD  T + ++S
Sbjct: 551 ALAEEIYSGTIKT--HAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLS 608

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 +  KA E    M   G      +Y+S++  Y R  N   +  ++    ++   I
Sbjct: 609 IYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKG--I 666

Query: 269 DPNAFSTLIKLYGTAGN--FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           +P+  S  I +Y    N   D    + EEMK     P+++TYN  +          +   
Sbjct: 667 EPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAID 726

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           + + M   G  PN NTY S++  Y + +  ++  S  + + +   Q+S
Sbjct: 727 VIRYMIKQGCKPNHNTYNSIVDWYCKLKLRDEACSFVQNLGDLDPQIS 774



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 40/78 (51%)

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
             + +++I    G+VS A ++ + +   GFE +++  TSLI  Y   ++  D ++   ++
Sbjct: 146 VIAVIVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKM 205

Query: 473 PELGITPDDRFCGCLLNV 490
            E+G  P       +LNV
Sbjct: 206 KEVGCEPTLITYNAILNV 223


>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
           [Vitis vinifera]
          Length = 875

 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 123/517 (23%), Positives = 228/517 (44%), Gaps = 39/517 (7%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   + +  + R      +L  +M+  G +P+ VT++ LI      N  N+AV  F+RM 
Sbjct: 382 YTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQ 441

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC PD +TY ++ID + +AG +++A  +Y + +      D   +S +I   G AG+  
Sbjct: 442 EAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLT 501

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++ EM   G  PN++TYN ++    +A+       +Y++M + G  P+  TY+ ++
Sbjct: 502 SAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVM 561

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
              G   + E+  +++ EMK K       +Y  L+ +   VG  ++++E ++ M ++  C
Sbjct: 562 EVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLC 621

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+  T +S+++      ++S+A  +   ML  G +P+L   T L+ C  +A+ + D+  
Sbjct: 622 -PNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTLLLSCCTEARSSFDM-- 678

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIE 527
                          FCG L+ V        L  +        +   +V K L       
Sbjct: 679 --------------GFCGELMAVTGHPAHMFLLSMPAAGPDGQNVRDHVSKFL------- 717

Query: 528 GDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRS 586
                   +L +S  ++ K+   + ++D      L E A  + E+     VY D ++ +S
Sbjct: 718 --------DLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVREKS 769

Query: 587 PTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASV 646
              W ++L  +S G A+TAL   +    + +      P  + I TG G+   S    AS+
Sbjct: 770 SCYWLINLHFMSDGTAVTALSRTLAWFHREMLVSGTVPSRIDIVTGWGRR--SRVTGASL 827

Query: 647 FESHLKEL----NAPFHDSPDKVGWFLTTEAAAKSWL 679
               ++EL    + PF       G F+        WL
Sbjct: 828 VRQAVQELLHIFSFPFFTENGNSGCFVGRGEPLGRWL 864



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 97/198 (48%), Gaps = 2/198 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAV 220
           S +   Y+V +    K   L  A +LF +M+D+G  P+ VT++ +I+  A+  N P  A+
Sbjct: 481 SPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPT-AL 539

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E +  M + G  PD +TYS +++  G  G++E A  ++   + + W  D   +  L+ L+
Sbjct: 540 ELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLW 599

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           G  GN +     Y+ M   G+ PN+ T N+LL    R  R      + + M   GL P+ 
Sbjct: 600 GKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSL 659

Query: 341 NTYASLLRAYGRARYGED 358
            TY  LL     AR   D
Sbjct: 660 QTYTLLLSCCTEARSSFD 677



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 107/238 (44%), Gaps = 6/238 (2%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   + +  K   LD A  ++  M +  + PD  T+S +I+C         A + F  
Sbjct: 450 VTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCE 509

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   GC P+ +TY+ MI    +A N   A  LY   +N  ++ D   +S ++++ G  G+
Sbjct: 510 MVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGH 569

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    ++ EMK     P+   Y  L+D  G+     +    Y+ M + GL PN  T  S
Sbjct: 570 LEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNS 629

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA------DVGYTDEAFEI 397
           LL A+ R     D  ++ + M   G+Q S+  Y  LL+ C       D+G+  E   +
Sbjct: 630 LLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTLLLSCCTEARSSFDMGFCGELMAV 687



 Score = 47.8 bits (112), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A   F  +K     + D  T+++M+ I     +      +  EM+  G +PN+     LI
Sbjct: 362 ALGFFYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLI 421

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
             YG+A   ++ V   +R+ E G  P DR   C L
Sbjct: 422 HSYGRANYLNEAVSVFDRMQEAGCQP-DRVTYCTL 455


>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
          Length = 853

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/498 (24%), Positives = 229/498 (45%), Gaps = 19/498 (3%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G K D  T++T+I             E  + M    C P  +TY+ +I AYGRA  ++ A
Sbjct: 355 GFKHDGHTYTTMIGILGQARQFGVLKELLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEA 414

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             +++  +   +  D   + TLI ++  AG  D  +++Y  M+ +G+ P+  TY+ +++ 
Sbjct: 415 VKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSVMVNC 474

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +G+  +      ++ EM +NG +PN  TY  ++    +AR  E+ + +Y++M+  G +  
Sbjct: 475 LGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPD 534

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
              Y+ ++ +    G+ DEA  +F +M+   +  PD   +  ++ +    G V +A   +
Sbjct: 535 KITYSIVMEVLGHCGHLDEAEAVFIEMR--RDWAPDEPVYGLLVDLWGKAGNVDKALGWY 592

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
             ML+ G +PN+    SL+  + K  R  D    L  +   G+ P  +    LL+  T  
Sbjct: 593 QAMLQDGLQPNVPTCNSLLSAFLKMNRFQDAYIVLQNMLARGLVPSVQTYTLLLSCCT-V 651

Query: 495 PKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF----NSISKDVKKAYC 550
            + ++G   + +  +     ++  L L + +  G   ++ T  F    +S  ++ K+   
Sbjct: 652 GQAQMGLCCQLMAITGHP-AHMFLLYLPDAEAGGQNVRDHTGYFLDMMHSEDRESKRGLM 710

Query: 551 NCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALH-- 607
           + +ID      L E A  + E+     VY D ++ +S + W ++L  +S G A+TAL   
Sbjct: 711 DAVIDFLHKSGLKEEAGFIWEVAAQKNVYPDSVREKSSSYWLINLHLMSEGTAVTALSRT 770

Query: 608 -IWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELN---APFHDSPD 663
             W +     L +G   P  + I TG G+ +    G + V +S  K LN   +PF  +  
Sbjct: 771 LAWFHRQVLTLGTG---PERIDIVTGWGR-RSRVTGSSLVRQSIQKLLNLFESPFFTTRG 826

Query: 664 KVGWFLTTEAAAKSWLES 681
             G F+        WL +
Sbjct: 827 NTGCFVGCGEPLNKWLHN 844



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           ++ G +     Y T++ +           E+ ++M S  +C+P   T++ +I        
Sbjct: 352 RQPGFKHDGHTYTTMIGILGQARQFGVLKELLDEM-SRAHCKPTVVTYNRIIHAYGRANY 410

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
           + EA  +F EM EAG+EP+     +LI  + KA   D  +    R+ E+G++PD      
Sbjct: 411 LKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSV 470

Query: 487 LLNVM 491
           ++N +
Sbjct: 471 MVNCL 475



 Score = 43.1 bits (100), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A   F+ +K     + D  T+++MI I     +    + + +EM  A  +P +     +I
Sbjct: 343 ALGFFQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKELLDEMSRAHCKPTVVTYNRII 402

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
             YG+A    + V+    + E G  P DR   C L
Sbjct: 403 HAYGRANYLKEAVKVFEEMQEAGYEP-DRVTYCTL 436


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 186/406 (45%), Gaps = 10/406 (2%)

Query: 99  YNSLVKL---AADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYF 155
           YN L++    +  LDS      ++F  ++  G +  E     ++N +        A ++F
Sbjct: 103 YNVLIRYFGRSGQLDSAM----EMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFF 158

Query: 156 TNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
              L+   +  +  YN+ M  FRK   LD A  LF +M  RG +P  VT++ L+      
Sbjct: 159 DAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSA 218

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
                A + F +M   GC PD+ TYS++++  G++G VE A  ++    +    +D   +
Sbjct: 219 GRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNY 278

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           ++L+     AGN D    + +EM   G  P+  ++N ++D +G+A +P   + ++  M +
Sbjct: 279 NSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVE 338

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
           +G  P+  +Y  L+ +Y R         +  EM E G       YN+L+   A  G  DE
Sbjct: 339 SGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDE 398

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           AF + E+M+++  C+PD  T++ ++ +   RG+   A  +F +M + G EP+       I
Sbjct: 399 AFAVLEEMETA-GCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRI 457

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 499
                  R D+ +     +  +G   D      L+    +    EL
Sbjct: 458 DGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHRAGDTEL 503



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 161/325 (49%), Gaps = 5/325 (1%)

Query: 181 LDKAERLFDDMLDRG--VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           LD  E L  +M+  G  ++P+  T   LI+     N    A + F +  SF C P    +
Sbjct: 11  LDPLETLLKEMVAEGRPLRPN--TLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAF 68

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           + +ID    +G  E A  +Y +   +  ++D  A++ LI+ +G +G  D  + ++ EMK 
Sbjct: 69  TKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKI 128

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
            G +P+  TY  L++ +G+A R  + ++ +  M + GL+PN  TY  L+ A+ +    + 
Sbjct: 129 KGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDM 188

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            L ++ EMK +G Q SV  YN LL      G    A ++F  M + + C PDS+T+S+++
Sbjct: 189 ALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKM-TGDGCSPDSYTYSTLV 247

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 G+V EA  +F EM++ G   +L    SL+    KA   D V + +  +   G  
Sbjct: 248 NGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFH 307

Query: 479 PDDRFCGCLLNVMTQTPKEELGKLV 503
           PD      +++ + +  K +  + V
Sbjct: 308 PDAFSFNTIMDALGKANKPDAAREV 332



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 160/310 (51%), Gaps = 1/310 (0%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           + ++AE ++  ++ +G + D   ++ LI     +   + A+E F  M   G +PD  TY 
Sbjct: 80  EFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYG 139

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +++A G+AG V+ A   +D         +   ++ L+  +   G  D  L ++ EMK  
Sbjct: 140 FLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRR 199

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G +P+++TYN LLD +  A R    + ++ +MT +G SP+  TY++L+   G++   E+ 
Sbjct: 200 GFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEA 259

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
             V+REM ++G+ + +  YN+LLA  A  G  D  +++ ++M S +   PD+++F++++ 
Sbjct: 260 HKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEM-SRKGFHPDAFSFNTIMD 318

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                 K   A  +F  M+E+G +P+L     LI  Y +        + L  + E G  P
Sbjct: 319 ALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIP 378

Query: 480 DDRFCGCLLN 489
           + +    L++
Sbjct: 379 ETKTYNSLIH 388



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 5/198 (2%)

Query: 284 GNFDGCLNVYEEMKAIG--VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
           G  D    + +EM A G  ++PN  T   L+   GR  +      ++ +      SP  +
Sbjct: 9   GILDPLETLLKEMVAEGRPLRPN--TLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVH 66

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            +  L+     +   E    VY+++ +KG QL    YN L+      G  D A E+F +M
Sbjct: 67  AFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREM 126

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K  +  +PD +T+  ++      G+V EA + F+ MLE G  PN+     L+  + K  +
Sbjct: 127 K-IKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQ 185

Query: 462 TDDVVRALNRLPELGITP 479
            D  +     +   G  P
Sbjct: 186 LDMALGLFAEMKRRGFQP 203


>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
 gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 142/618 (22%), Positives = 259/618 (41%), Gaps = 55/618 (8%)

Query: 82  PKSPRASKLKEKSYDTRYNSLV-KLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILN 140
           P+  +A   +  S DT+  ++V + A    S     ++V  +LR L      ++ ++ LN
Sbjct: 241 PQRLKAQPNRRPSRDTKMPAVVARSARQFVSTGHVVENVSQILRQLRWGPSAEEALVNLN 300

Query: 141 ------------NMTNPDTAALALTYFTNKLKASK-EVILYNVTMKVFRKCRDLDKAERL 187
                             T AL   ++  +L   K +   Y   + +  + +      +L
Sbjct: 301 CHMDAYQANQVLKQLQDHTVALGFFHWLKQLPGFKHDGYTYTTMVGILGRAKQFVAINKL 360

Query: 188 FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
            D M+  G +P  VT++ LI      N  N AVE F +M   GC+PD +TY ++ID + +
Sbjct: 361 LDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLIDIHAK 420

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
           AG +  A  +Y R +      D   +S +I   G AG+      ++ EM   G  PN++T
Sbjct: 421 AGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVT 480

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           YN ++    +A+       +Y++M + G  P+  TY+ ++   G + Y ++  +++ EMK
Sbjct: 481 YNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMK 540

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
            K       +Y  L+ +    G  ++A+E ++ M  +  C P+  T +S+++      ++
Sbjct: 541 RKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLC-PNVPTCNSLLSAFLRVNRL 599

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
            +A  +   ML  G  P+L   T L+ C  +A+                 +P D  C C 
Sbjct: 600 PDAYNLLQSMLNLGLNPSLQTYTLLLSCCTEAR-----------------SPYDMGCYCE 642

Query: 488 LNVMTQTPKEE-LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 546
           L  +T  P    L  L        +   +V K L               ++ +S  ++ K
Sbjct: 643 LMSVTGHPAHMFLSSLPSAGPDGQNVRHHVSKFL---------------DMMHSEDRESK 687

Query: 547 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTA 605
           +   + ++D      L E A  + E+     VY D ++ +S   W ++L  +S G A+TA
Sbjct: 688 RGLVDAVVDFLHKSGLKEEAGSVWEIAAQRNVYPDAVKEKSSCYWLINLHVMSEGTAVTA 747

Query: 606 LHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKEL----NAPFHDS 661
           L   +    + +      P  + I TG G+   S    +S+    ++EL    + PF   
Sbjct: 748 LSRTLAWFRRQMLVSGVIPSRIDIVTGWGRR--SRVTGSSLVRQAVQELLHIFSFPFFTE 805

Query: 662 PDKVGWFLTTEAAAKSWL 679
               G F+        WL
Sbjct: 806 NGNTGCFVGCGEPLSRWL 823


>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 882

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 129/502 (25%), Positives = 229/502 (45%), Gaps = 28/502 (5%)

Query: 195 GVKPDNVTFSTLISC---ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
           G   D  T++T++     AR     NK +E   +M   GC P+ +TY+ +I +YGRA  +
Sbjct: 381 GFWHDGHTYTTMVGILGRAREFGAINKLLE---QMVKDGCQPNVVTYNRLIHSYGRANYL 437

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
             A  ++++ +      D   + TLI ++  AG  D  +++YE M+ +G+ P+  TY+ +
Sbjct: 438 GEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVM 497

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           ++ +G++        ++ EM D G  PN  TY  L+    +AR  +  L +YR+M+  G 
Sbjct: 498 INCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGF 557

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
           +     Y+ ++ +    GY +EA  +F +MK + N  PD   +  +I +    G V +A 
Sbjct: 558 KPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQN-NWVPDEPVYGLLIDLWGKAGNVEKAW 616

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
             ++ ML AG  PN+    SL+  + +  R  D    L  +  LG+ P  +    LL+  
Sbjct: 617 EWYHAMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLSCC 676

Query: 492 T--QTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-------DFKKEATELFNSIS 542
           T  Q+P  ++G   E +  S    G+     L+     G       D   +  +L +S  
Sbjct: 677 TEAQSPY-DMGFCCELMAVS----GHPAHAFLQSMPAAGPDGQNVRDHVSKFLDLMHSED 731

Query: 543 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGA 601
           ++ K+   + ++D      L E A  + E+     VY D I+ +S   W ++L  +S G 
Sbjct: 732 REGKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAIREKSTCYWLINLHVMSDGT 791

Query: 602 ALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKEL----NAP 657
           A+TAL   +    + + +    P  + I TG G+   S    +S+    ++EL    + P
Sbjct: 792 AVTALSRTLAWFRRQMLASGVGPNRIDIITGWGRR--SRVTGSSLVRQAVQELLHVFSFP 849

Query: 658 FHDSPDKVGWFLTTEAAAKSWL 679
           F       G F+        WL
Sbjct: 850 FFTENGNSGCFVGCGEPLSQWL 871



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 96/199 (48%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+++     ++  S +   Y+V +    K  +L  A RLF +M+D+G  P+ VT++ LI+
Sbjct: 475 AMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIA 534

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                     A++ +  M + G  PD +TYS +++  G  G +E A  ++   +   W  
Sbjct: 535 LQAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVP 594

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +  LI L+G AGN +     Y  M   G+ PN+ T N+LL    R  R      + 
Sbjct: 595 DEPVYGLLIDLWGKAGNVEKAWEWYHAMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLL 654

Query: 329 KEMTDNGLSPNWNTYASLL 347
           + M   GL+P+  TY  LL
Sbjct: 655 QNMVTLGLNPSLQTYTLLL 673



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 103/222 (46%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   + +  K   LD A  +++ M + G+ PD  T+S +I+C   +   + A   F  
Sbjct: 457 VTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCE 516

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   GC P+ +TY+ +I    +A N + A  LY   +N  ++ D   +S ++++ G  G 
Sbjct: 517 MVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLGYCGY 576

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    V+ EMK     P+   Y  L+D  G+A    +    Y  M   GL PN  T  S
Sbjct: 577 LEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAMLRAGLLPNVPTCNS 636

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           LL A+ R     D  ++ + M   G+  S+  Y  LL+ C +
Sbjct: 637 LLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLSCCTE 678


>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
 gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
          Length = 773

 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 160/673 (23%), Positives = 277/673 (41%), Gaps = 103/673 (15%)

Query: 112 CSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDT---------------------AAL 150
           C  TE     ++  +G + L + C  I  +M   D                      A+L
Sbjct: 78  CKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASL 137

Query: 151 ALTYFTNKLKASKEVILYNVTMKVFRKCR-DLDKAERLFDDMLDRGVKPDNVTFSTLISC 209
            L     K +    +I YN  +    K   D +    LF  M   G++PD +T++TL+S 
Sbjct: 138 HLLARMKKEQVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSA 197

Query: 210 ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
                L  +A   F+ M   G   DA+TY S++D +  +  +     L     +E    D
Sbjct: 198 CSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNPPD 257

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
              +++LI+ Y  AGN  G   V+++M+  G  P++ TY+ LL   G      QV++++ 
Sbjct: 258 IAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFS 317

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           +M D    P   TY SL++ +G   Y +++++++ +M + G++     Y+ LL++C   G
Sbjct: 318 DMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGG 377

Query: 390 YTDEAFEIFEDMKSSENC----------------------------------QPDSWTFS 415
            T EA +I + M ++E+                                    P    + 
Sbjct: 378 LTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAYD 437

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           ++I   +  G   EA +    M +AGF+  +  + S+++ Y K    D+ +   + L + 
Sbjct: 438 ALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEALEFFSELQQK 497

Query: 476 -GITPDDRFCGCLLNV-----MTQTPKEEL----------GKLVECVEKS----NSKLGY 515
            G   D+R    LL V     + +  KEE           G  V C+  S     SK  Y
Sbjct: 498 EGSEVDERTHETLLGVYCDMGLLEEAKEEFVIIKETSKVPGARVYCLLLSLCVRRSKWDY 557

Query: 516 VVKLLLE-------EQDIEG--------DFKKEATEL-FNSIS-KDVKKA--YCNCLIDL 556
             +LL E        Q + G        DF  +  E  F+ +  +D++++  + N L++L
Sbjct: 558 ATQLLDEMIAAGGLHQVVVGIVRGTYDADFSWQVVEYAFDGLKLRDMEESMDFYNALVEL 617

Query: 557 CVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA 616
            V  N    A ++L   +    + +   ++   WS+++  +S GA +TAL  W NDL + 
Sbjct: 618 LVYCNQKARAARVLADAMQRGAFPEAFIKTRRVWSVNVHRMSAGATVTALSTWFNDLQEC 677

Query: 617 LESGEEFPPLLGINTGHG----KHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTE 672
               E+ P +  I    G      K  D  +A V ++ LK   AP   +    G  +   
Sbjct: 678 ----EKLPFMTSIVVSCGDIEDHRKVEDLPVAKVVQAFLKHYAAPLETASWNEGRIVCKG 733

Query: 673 AAAKSWLESRSSL 685
            A K WL S  S 
Sbjct: 734 EALKPWLSSMPSF 746



 Score = 43.9 bits (102), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 44/87 (50%)

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A  +F+ M+  + C+P    ++ MI I    G + +   +F +M E   + N++  T+LI
Sbjct: 65  ALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALI 124

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPD 480
             YG+  + +  +  L R+ +  + P+
Sbjct: 125 NAYGRNGQYEASLHLLARMKKEQVEPN 151


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 202/418 (48%), Gaps = 27/418 (6%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +N  +  + KC +LD+ E+L ++M   G K D VT++ LI+C         A  +F
Sbjct: 222 DVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYF 281

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G   + +T+S+ +DA+ + G V  A  L+ + R     ++   ++ LI     A
Sbjct: 282 AAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKA 341

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D  + + +EM   GV  N++TY  L+D + + ++  + + + + M   G+  N   Y
Sbjct: 342 GRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLY 401

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+  +   +  E  L +  EMK KG++L ++LY  L+    +V   DEA  +   M  
Sbjct: 402 TTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDE 461

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S   +P+   +++M+  C   GKV EA AM  ++L++GF+PN+    +LI    KA   D
Sbjct: 462 S-GLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSID 520

Query: 464 DVVRALNRLPELGITPD--------DRFC--GCLLNVMTQTPKEELGKLVECVEKSNS-- 511
           + +   N++ +LG+ P+        D  C  GCL         E +    E V K  S  
Sbjct: 521 EAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCL--------NEAVQLFNEMVHKGMSLD 572

Query: 512 KLGYVVKL--LLEEQDIEGDFKKEATELFNSISKDVKKAYC-NCLIDLCVNLNLLENA 566
           K+ Y   L   L++ ++   F  +A  + + +  D+   +C  C I    NLN++  A
Sbjct: 573 KVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDL---FCYTCFISGFCNLNMMPEA 627



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 151/326 (46%), Gaps = 6/326 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           LD A  L D+M+ +GV  + VT++ L+          +A +    M   G   + L Y++
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I  +    N E A GL    +N+   +D + +  LI+        D   ++  +M   G
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           ++PN I Y  ++D   ++ +  +   + +++ D+G  PN  TY +L+    +A   ++ +
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAI 523

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
           S + +M++ G+  +V  Y  L+      G  +EA ++F +M   +    D   +++++  
Sbjct: 524 SHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEM-VHKGMSLDKVVYTALLDG 582

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              +G + +A A+  +M+++G + +LF  T  I  +       +     + +   GI PD
Sbjct: 583 YLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPD 642

Query: 481 DRFCGCLLNVMTQTPKEELGKLVECV 506
                CL+     +  ++LG L E +
Sbjct: 643 RAVYNCLI-----SKYQKLGNLEEAI 663



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 148/335 (44%), Gaps = 38/335 (11%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D++ RL   + ++   P+  TF+ +I          +A   F RM   GC PD +T++S+
Sbjct: 170 DRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSL 229

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           ID YG+ G ++    L +  R    + D   ++ LI  +   G  +     +  MK  GV
Sbjct: 230 IDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGV 289

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
             N++T++  +D   +     +   ++ +M   G++ N  TY  L+    +A   +D + 
Sbjct: 290 MANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIV 349

Query: 362 VYREMKEKGMQLSVTLYNTL----------------LAMCADVG-------YT------- 391
           +  EM  +G+ L+V  Y  L                L M    G       YT       
Sbjct: 350 LLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHF 409

Query: 392 -----DEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPN 445
                ++A  +  +MK ++  + D   + ++I  +C+   K+ EA+++  +M E+G EPN
Sbjct: 410 MNKNSEKALGLLSEMK-NKGLELDISLYGALIQGLCNVH-KLDEAKSLLTKMDESGLEPN 467

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             + T+++    K+ +  + +  L ++ + G  P+
Sbjct: 468 YIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPN 502



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 123/256 (48%), Gaps = 1/256 (0%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           +KA  L  +M ++G++ D   +  LI      +  ++A     +M   G +P+ + Y++M
Sbjct: 415 EKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTM 474

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           +DA  ++G V  A  +  +  +  ++ +   +  LI     AG+ D  ++ + +M+ +G+
Sbjct: 475 MDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGL 534

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            PN+  Y  L+D + +     +   ++ EM   G+S +   Y +LL  Y +     D  +
Sbjct: 535 DPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFA 594

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           +  +M + G+QL +  Y   ++   ++    EA E+F +M       PD   ++ +I+  
Sbjct: 595 LKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEM-IGHGIAPDRAVYNCLISKY 653

Query: 422 SCRGKVSEAEAMFNEM 437
              G + EA ++ +EM
Sbjct: 654 QKLGNLEEAISLQDEM 669



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 128/266 (48%), Gaps = 14/266 (5%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEW 222
           ++ LY   ++       LD+A+ L   M + G++P+ + ++T++ +C +   +P +A+  
Sbjct: 432 DISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVP-EAIAM 490

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLY 280
            +++   G  P+ +TY ++ID   +AG+++ A   +++ R+    +DPN  A++ L+   
Sbjct: 491 LQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRD--LGLDPNVQAYTALVD-- 546

Query: 281 GTAGNFDGCLN----VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           G   N  GCLN    ++ EM   G+  + + Y  LLD   +         +  +M D+GL
Sbjct: 547 GLCKN--GCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGL 604

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
             +   Y   +  +       +   V+ EM   G+     +YN L++    +G  +EA  
Sbjct: 605 QLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAIS 664

Query: 397 IFEDMKSSENCQPDSWTFSSMITICS 422
           + ++M+       DS T +   ++C+
Sbjct: 665 LQDEMERVLPSCTDSDTATDAGSVCT 690



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 113/299 (37%), Gaps = 47/299 (15%)

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL-----DTMGRAKRPW------- 322
           TL+ +    G  D  +     ++ + V PN  T N++L     D  GR  R         
Sbjct: 127 TLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLPAP 186

Query: 323 -------------------QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
                              + ++++  M + G  P+  T+ SL+  YG+    ++   + 
Sbjct: 187 NVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLV 246

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
            EM+  G +  V  YN L+      G  + A+  F  MK  E    +  TFS+ +     
Sbjct: 247 EEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMK-REGVMANVVTFSTFVDAFCK 305

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
            G V EA  +F +M   G   N F  T LI    KA R DD +  L+ +   G+      
Sbjct: 306 EGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVP----- 360

Query: 484 CGCLLNVMTQTP------KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536
               LNV+T T       KE      E V +   K G     LL    I G F  + +E
Sbjct: 361 ----LNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSE 415



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 12/197 (6%)

Query: 83  KSPRASKLKEKSYDTRYN-SLVKLAADLDS-CSATEDDV----FSVLRCLGDDFLEQDCV 136
           K P A  + +K  D+ +  +++   A +D  C A   D     F+ +R LG D   Q   
Sbjct: 483 KVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYT 542

Query: 137 IILNNMTNPDTAALALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
            +++ +        A+  F   +    S + ++Y   +  + K  +L  A  L   M+D 
Sbjct: 543 ALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDS 602

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G++ D   ++  IS     N+  +A E F  M   G  PD   Y+ +I  Y + GN+E A
Sbjct: 603 GLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEA 662

Query: 255 FGLYDRARNEKWRIDPN 271
             L D    E  R+ P+
Sbjct: 663 ISLQD----EMERVLPS 675


>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 876

 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/495 (24%), Positives = 219/495 (44%), Gaps = 14/495 (2%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G   D  T++T++             +  ++M   GC P+ +TY+ +I +YGRA  +  A
Sbjct: 375 GFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDA 434

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             +++  +      D   + TLI ++  AG  D  L +Y+ M+A G+ P+  TY+ +++ 
Sbjct: 435 VDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINC 494

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +G+A        ++ EM + G  PN  TY  ++    +AR  +  L +YR+M+  G Q  
Sbjct: 495 LGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPD 554

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
              Y+ ++ +    GY DEA  +F +MK  +N  PD   +  ++ +    G V +A   +
Sbjct: 555 KVTYSIVMEVLGHCGYLDEAEAVFSEMKR-KNWVPDEPVYGLLVDLWGKAGNVEKAWQWY 613

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
             ML  G  PN+    SL+  + +  +  D    L  + ELG+ P  +    LL+  T+ 
Sbjct: 614 QTMLNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLNPSLQTYTLLLSCCTEA 673

Query: 495 PKE-ELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----DFKKEATELFNSISKDVKKAY 549
               ++G   E +  +     ++  L L     +G    D   +  +L +S  ++ K+  
Sbjct: 674 RSPYDMGIYCELMAVTGHP-AHMFLLSLPSAGPDGQNVRDHASKFLDLMHSEDRESKRGL 732

Query: 550 CNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHI 608
            + ++D      L E A  + E+     VY D ++ +    W ++L  +S G A+TAL  
Sbjct: 733 VDAVVDFLHKSGLKEEAGSVWEVAAQRNVYPDAVKEKGSCYWLINLHVMSDGTAVTALSR 792

Query: 609 WINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKEL----NAPFHDSPDK 664
            +    + +      P  + I TG G+   S    +S+    ++EL    + PF      
Sbjct: 793 TLAWFRQQMLVSGISPSRIDIVTGWGRR--SRVTGSSMVRQAVQELLHIFSFPFFTENGN 850

Query: 665 VGWFLTTEAAAKSWL 679
            G F+        WL
Sbjct: 851 SGCFVGCGEPLNRWL 865



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 106/225 (47%), Gaps = 6/225 (2%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   + +  K   LD A  ++  M   G+ PD  T+S +I+C         A + F  
Sbjct: 451 VTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCE 510

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   GC P+ +TY+ MI    +A N + A  LY   ++  ++ D   +S ++++ G  G 
Sbjct: 511 MVEQGCVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGY 570

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA---KRPWQVKTIYKEMTDNGLSPNWNT 342
            D    V+ EMK     P+   Y  L+D  G+A   ++ WQ    Y+ M + GL PN  T
Sbjct: 571 LDEAEAVFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWQ---WYQTMLNTGLRPNVPT 627

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
             SLL A+ R     D  ++ + M E G+  S+  Y  LL+ C +
Sbjct: 628 CNSLLSAFLRVHKLADAYNLLQSMLELGLNPSLQTYTLLLSCCTE 672



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 1/205 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +   Y+V +    K   L  A +LF +M+++G  P+ VT++ +I+          A++
Sbjct: 482 SPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALK 541

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            +  M S G  PD +TYS +++  G  G ++ A  ++   + + W  D   +  L+ L+G
Sbjct: 542 LYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEPVYGLLVDLWG 601

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AGN +     Y+ M   G++PN+ T N+LL    R  +      + + M + GL+P+  
Sbjct: 602 KAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLNPSLQ 661

Query: 342 TYASLLRAYGRARYGEDTLSVYREM 366
           TY  LL     AR   D + +Y E+
Sbjct: 662 TYTLLLSCCTEARSPYD-MGIYCEL 685



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A   F  +K       D  T+++M+ I     +      + ++M++ G +PN+     LI
Sbjct: 363 ALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLI 422

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
             YG+A   +D V   N +  +G  P DR   C L
Sbjct: 423 HSYGRANYLNDAVDVFNEMQRVGCEP-DRVTYCTL 456


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 202/418 (48%), Gaps = 27/418 (6%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +N  +  + KC +LD+ E+L ++M   G K D VT++ LI+C         A  +F
Sbjct: 222 DVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYF 281

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G   + +T+S+ +DA+ + G V  A  L+ + R     ++   ++ LI     A
Sbjct: 282 AAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKA 341

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D  + + +EM   GV  N++TY  L+D + + ++  + + + + M   G+  N   Y
Sbjct: 342 GRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLY 401

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+  +   +  E  L +  EMK KG++L ++LY  L+    +V   DEA  +   M  
Sbjct: 402 TTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDE 461

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S   +P+   +++M+  C   GKV EA AM  ++L++GF+PN+    +LI    KA   D
Sbjct: 462 S-GLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSID 520

Query: 464 DVVRALNRLPELGITPD--------DRFC--GCLLNVMTQTPKEELGKLVECVEKSNS-- 511
           + +   N++ +LG+ P+        D  C  GCL         E +    E V K  S  
Sbjct: 521 EAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCL--------NEAVQLFNEMVHKGMSLD 572

Query: 512 KLGYVVKL--LLEEQDIEGDFKKEATELFNSISKDVKKAYC-NCLIDLCVNLNLLENA 566
           K+ Y   L   L++ ++   F  +A  + + +  D+   +C  C I    NLN++  A
Sbjct: 573 KVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDL---FCYTCFISGFCNLNMMPEA 627



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 151/326 (46%), Gaps = 6/326 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           LD A  L D+M+ +GV  + VT++ L+          +A +    M   G   + L Y++
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I  +    N E A GL    +N+   +D + +  LI+        D   ++  +M   G
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           ++PN I Y  ++D   ++ +  +   + +++ D+G  PN  TY +L+    +A   ++ +
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAI 523

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
           S + +M++ G+  +V  Y  L+      G  +EA ++F +M   +    D   +++++  
Sbjct: 524 SHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEM-VHKGMSLDKVVYTALLDG 582

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              +G + +A A+  +M+++G + +LF  T  I  +       +     + +   GI PD
Sbjct: 583 YLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPD 642

Query: 481 DRFCGCLLNVMTQTPKEELGKLVECV 506
                CL+     +  ++LG L E +
Sbjct: 643 RAVYNCLI-----SKYQKLGNLEEAI 663



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 148/335 (44%), Gaps = 38/335 (11%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D++ RL   + ++   P+  TF+ +I          +A   F RM   GC PD +T++S+
Sbjct: 170 DRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSL 229

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           ID YG+ G ++    L +  R    + D   ++ LI  +   G  +     +  MK  GV
Sbjct: 230 IDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGV 289

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
             N++T++  +D   +     +   ++ +M   G++ N  TY  L+    +A   +D + 
Sbjct: 290 MANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIV 349

Query: 362 VYREMKEKGMQLSVTLYNTL----------------LAMCADVG-------YT------- 391
           +  EM  +G+ L+V  Y  L                L M    G       YT       
Sbjct: 350 LLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHF 409

Query: 392 -----DEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPN 445
                ++A  +  +MK ++  + D   + ++I  +C+   K+ EA+++  +M E+G EPN
Sbjct: 410 MNKNSEKALGLLSEMK-NKGLELDISLYGALIQGLCNVH-KLDEAKSLLTKMDESGLEPN 467

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             + T+++    K+ +  + +  L ++ + G  P+
Sbjct: 468 YIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPN 502



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 123/256 (48%), Gaps = 1/256 (0%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           +KA  L  +M ++G++ D   +  LI      +  ++A     +M   G +P+ + Y++M
Sbjct: 415 EKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTM 474

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           +DA  ++G V  A  +  +  +  ++ +   +  LI     AG+ D  ++ + +M+ +G+
Sbjct: 475 MDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGL 534

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            PN+  Y  L+D + +     +   ++ EM   G+S +   Y +LL  Y +     D  +
Sbjct: 535 DPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFA 594

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           +  +M + G+QL +  Y   ++   ++    EA E+F +M       PD   ++ +I+  
Sbjct: 595 LKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEM-IGHGIAPDRAVYNCLISKY 653

Query: 422 SCRGKVSEAEAMFNEM 437
              G + EA ++ +EM
Sbjct: 654 QKLGNLEEAISLQDEM 669



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 120/246 (48%), Gaps = 14/246 (5%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEW 222
           ++ LY   ++       LD+A+ L   M + G++P+ + ++T++ +C +   +P +A+  
Sbjct: 432 DISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVP-EAIAM 490

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLY 280
            +++   G  P+ +TY ++ID   +AG+++ A   +++ R+    +DPN  A++ L+   
Sbjct: 491 LQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRD--LGLDPNVQAYTALVD-- 546

Query: 281 GTAGNFDGCLN----VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           G   N  GCLN    ++ EM   G+  + + Y  LLD   +         +  +M D+GL
Sbjct: 547 GLCKN--GCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGL 604

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
             +   Y   +  +       +   V+ EM   G+     +YN L++    +G  +EA  
Sbjct: 605 QLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAIS 664

Query: 397 IFEDMK 402
           + ++M+
Sbjct: 665 LQDEME 670



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 113/299 (37%), Gaps = 47/299 (15%)

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL-----DTMGRAKRPW------- 322
           TL+ +    G  D  +     ++ + V PN  T N++L     D  GR  R         
Sbjct: 127 TLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLPAP 186

Query: 323 -------------------QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
                              + ++++  M + G  P+  T+ SL+  YG+    ++   + 
Sbjct: 187 NVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLV 246

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
            EM+  G +  V  YN L+      G  + A+  F  MK  E    +  TFS+ +     
Sbjct: 247 EEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMK-REGVMANVVTFSTFVDAFCK 305

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
            G V EA  +F +M   G   N F  T LI    KA R DD +  L+ +   G+      
Sbjct: 306 EGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVP----- 360

Query: 484 CGCLLNVMTQTP------KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536
               LNV+T T       KE      E V +   K G     LL    I G F  + +E
Sbjct: 361 ----LNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSE 415



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 12/197 (6%)

Query: 83  KSPRASKLKEKSYDTRYN-SLVKLAADLDS-CSATEDD----VFSVLRCLGDDFLEQDCV 136
           K P A  + +K  D+ +  +++   A +D  C A   D     F+ +R LG D   Q   
Sbjct: 483 KVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYT 542

Query: 137 IILNNMTNPDTAALALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
            +++ +        A+  F   +    S + ++Y   +  + K  +L  A  L   M+D 
Sbjct: 543 ALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDS 602

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G++ D   ++  IS     N+  +A E F  M   G  PD   Y+ +I  Y + GN+E A
Sbjct: 603 GLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEA 662

Query: 255 FGLYDRARNEKWRIDPN 271
             L D    E  R+ P+
Sbjct: 663 ISLQD----EMERVLPS 675


>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
          Length = 607

 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 132/557 (23%), Positives = 250/557 (44%), Gaps = 36/557 (6%)

Query: 152 LTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-- 207
           L YF   LK     +   +N  +    +   L+ A  +FD+M+  G+  D  T++T I  
Sbjct: 37  LGYFRQMLKDGLCPDRKTFNSLLAACSRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDA 96

Query: 208 --SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
              C  M      A++    M + G  P+ +TYS++ID Y +    E A  L ++ ++ +
Sbjct: 97  ICKCGNME----LAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKMKSMR 152

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
            ++D   ++TL+ +Y  AG +    NV +EM+ +G++ + +TYN+L++  G+  R   V 
Sbjct: 153 IQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGRLDIVS 212

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + ++M   G++P+  TY++L+  Y +A    D  +VY + KE G++  V L+++ +   
Sbjct: 213 ILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTL 272

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
           A  G  + A  +  DM +    +P+  T++++I        + E ++   +M   G    
Sbjct: 273 AKNGLIEWALSLLNDM-TEMGIKPNVVTYNAIIDAFGKSKVMMEDDSEVGDMGIVGVYGG 331

Query: 446 LFVLTSLIQCYGKAQRTDDVVR----------ALNRLPELGITPDDRFCGCLLNVMTQTP 495
             V  +     G    TD  +R             ++ + G+ P+      +LN  ++  
Sbjct: 332 QIVRVANPVSRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSRCN 391

Query: 496 K-EELGKLVECVEK-SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK---DVKKAYC 550
             E+   L+E +    N   G    LL+  +++      +A  LFN + +       A+ 
Sbjct: 392 SFEDAALLLEQLRLFDNFVYGVAYGLLVGSREVW----SQAQSLFNQLGRMDSPTSSAFY 447

Query: 551 NCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWI 610
           N L D+  +      A +++  G+   V+ +    +  ++ L L  +S GAA   +H W+
Sbjct: 448 NALTDVLWHFGQRRKAQQVVFEGINRRVWEN----TWGEFCLDLHLMSCGAAQAMVHAWL 503

Query: 611 NDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELNAPFHDSPDKVGWF 668
            ++   +  G   P  L I TG GKH        L  V E+ L  + APF      +G F
Sbjct: 504 LNVRSIVFEGRAMPEFLSILTGWGKHSRIAGASTLRRVIEALLNSIGAPFQVERFNIGRF 563

Query: 669 LTTEAAAKSWLESRSSL 685
           ++  A   +WL    + 
Sbjct: 564 VSPSAVVAAWLRESGTF 580



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 159/337 (47%), Gaps = 18/337 (5%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L      ++   + + YN  + ++ K     +   + D+M + G++ D VT+++LI+
Sbjct: 141 ALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLIN 200

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   +      + M   G  P  LTYS++ID Y +AG    AF +Y   +    + 
Sbjct: 201 GYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKP 260

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   FS+ I      G  +  L++  +M  +G+KPN++TYN ++D  G++K   +  +  
Sbjct: 261 DVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSKVMMEDDSEV 320

Query: 329 KEMTDNGLSPNWNTYASLLRAYG-------RARYGED---TLSVYREMKEKGMQLSVTLY 378
            +M   G+        +   + G       R R  ++    L ++++M ++G++ +V  +
Sbjct: 321 GDMGIVGVYGGQIVRVANPVSRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTF 380

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM- 437
           + +L  C+     ++A  + E ++  +N     +  +  + + S R   S+A+++FN++ 
Sbjct: 381 SAILNACSRCNSFEDAALLLEQLRLFDNF---VYGVAYGLLVGS-REVWSQAQSLFNQLG 436

Query: 438 -LEAGFEPNLF-VLTSLIQCYGKAQRTDDVV-RALNR 471
            +++      +  LT ++  +G+ ++   VV   +NR
Sbjct: 437 RMDSPTSSAFYNALTDVLWHFGQRRKAQQVVFEGINR 473



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 9/162 (5%)

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGED---TLSVYREMKEKGMQLSVTLYNTLLA 383
           + + M   GL P   +Y +++ A G+   G D   TL  +R+M + G+      +N+LLA
Sbjct: 3   VLESMKGAGLRPTTVSYNAVIDACGKG--GVDLRFTLGYFRQMLKDGLCPDRKTFNSLLA 60

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGF 442
            C+ VG+ ++A  +F++M        D +T+++ I  IC C G +  A  +  +M   G 
Sbjct: 61  ACSRVGHLEDARAVFDEMIHL-GIGRDIYTYNTFIDAICKC-GNMELAMQVLLDMEAKGV 118

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
           +PN+   ++LI  Y K ++ ++ ++   ++  + I   DR C
Sbjct: 119 KPNVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQL-DRVC 159


>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
 gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
          Length = 773

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 159/673 (23%), Positives = 277/673 (41%), Gaps = 103/673 (15%)

Query: 112 CSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDT---------------------AAL 150
           C  TE     ++  +G + L + C  I  +M   D                      A+L
Sbjct: 78  CKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASL 137

Query: 151 ALTYFTNKLKASKEVILYNVTMKVFRKCR-DLDKAERLFDDMLDRGVKPDNVTFSTLISC 209
            L     K +    +I YN  +    K   D +    LF  M   G++PD +T++TL+S 
Sbjct: 138 HLLARMKKERVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSA 197

Query: 210 ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
                L  +A   F+ M   G   DA+TY S++D +  +  +     L     +E    D
Sbjct: 198 CSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNSPD 257

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
              +++LI+ Y  AGN  G   V+++M+  G  P++ TY+ LL   G      QV++++ 
Sbjct: 258 IAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFS 317

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           +M +    P   TY SL++ +G   Y +++++++ +M + G++     Y+ LL++C   G
Sbjct: 318 DMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGG 377

Query: 390 YTDEAFEIFEDMKSSENC----------------------------------QPDSWTFS 415
            T EA +I + M ++E+                                    P    + 
Sbjct: 378 LTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAYD 437

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           ++I   +  G   EA +    M +AGF+  +  + S+++ Y K    D+ +   + L + 
Sbjct: 438 ALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEALEFFSELQQK 497

Query: 476 -GITPDDRFCGCLLNV-----MTQTPKEEL----------GKLVECVEKS----NSKLGY 515
            G   D+R    LL V     + +  KEE           G  V C+  S     SK  Y
Sbjct: 498 EGSEVDERTHETLLGVYCDMGLLEEAKEEFVIIKETSKVPGARVYCLLLSLCVRRSKWDY 557

Query: 516 VVKLLLE-------EQDIEG--------DFKKEATEL-FNSIS-KDVKKA--YCNCLIDL 556
             +LL E        Q + G        DF  +  E  F+ +  +D++++  + N L++L
Sbjct: 558 ATQLLDEMIAAGGLHQVVVGIVRGTYDADFSWQVVEYAFDGLKLRDMEESMDFYNALVEL 617

Query: 557 CVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA 616
            V  N    A ++L   +    + +   ++   WS+++  +S GA +TAL  W NDL + 
Sbjct: 618 LVYCNQKARAARVLADAMQRGAFPEAFIKTRRVWSVNVHRMSAGATVTALSTWFNDLQEC 677

Query: 617 LESGEEFPPLLGINTGHG----KHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTE 672
               E+ P +  I    G      K  D  +A V ++ LK   AP   +    G  +   
Sbjct: 678 ----EKLPFMTSIVVSCGDIEDHRKVEDLPVAKVVQAFLKHYAAPLETASWNEGRIVCKG 733

Query: 673 AAAKSWLESRSSL 685
            A K WL S  S 
Sbjct: 734 EALKPWLSSMPSF 746



 Score = 43.5 bits (101), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 44/87 (50%)

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A  +F+ M+  + C+P    ++ MI I    G + +   +F +M E   + N++  T+LI
Sbjct: 65  ALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALI 124

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPD 480
             YG+  + +  +  L R+ +  + P+
Sbjct: 125 NAYGRNGQYEASLHLLARMKKERVEPN 151


>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 886

 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 117/500 (23%), Positives = 228/500 (45%), Gaps = 9/500 (1%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G K D  T++T++             +  + M   GC P+ +TY+ +I +YGRA  +  A
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             ++++ +    + D   + TLI ++  AG  D  +++Y+ M+A G+ P+  TY+ +++ 
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +G+A        ++ EM D G +PN  TY  ++  + +AR  ++ L +YR+M+  G +  
Sbjct: 479 LGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPD 538

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
              Y+ ++ +    GY +EA  +F +M+  +N  PD   +  ++ +    G V +A   +
Sbjct: 539 KVTYSIVMEVLGHCGYLEEAEAVFTEMQQ-KNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ- 493
             ML AG  PN+    SL+  + +  +  +    L  +  LG+ P  +    LL+  T  
Sbjct: 598 QAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDG 657

Query: 494 TPKEELGKLVECVEKSNSKLG-YVVKLLLEEQDIEG--DFKKEATELFNSISKDVKKAYC 550
             K ++G   + +  +      +++K+     D E   +      +L +S  ++ K+   
Sbjct: 658 RSKLDMGFCGQLMASTGHPAHMFLLKMPAAGPDGENVRNHANNFLDLMHSEDRESKRGLV 717

Query: 551 NCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIW 609
           + ++D        E A  + E+     V+ D ++ +S + W ++L  +S G A+TAL   
Sbjct: 718 DAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRT 777

Query: 610 INDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELNAPFHDSPDKVGW 667
           +    K + +    P  + I TG G+         +    E  L    +PF       G 
Sbjct: 778 LAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFFTESGNSGC 837

Query: 668 FLTTEAAAKSWLESRSSLVS 687
           F+ +      WL  +S LVS
Sbjct: 838 FVGSGEPLNRWL-LQSHLVS 856



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 152/329 (46%), Gaps = 11/329 (3%)

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
           +N   RID    + ++K     GN  G    Y   +  G K +  TY  ++  +GRAK+ 
Sbjct: 323 QNLGLRIDAYQANQVLKQMNDYGNALGFF--YWLKRQPGFKHDGHTYTTMVGNLGRAKQF 380

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
             +  +  EM  +G  PN  TY  L+ +YGRA Y  + ++V+ +M+E G +     Y TL
Sbjct: 381 GAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTL 440

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           + + A  G+ D A ++++ M++     PD++T+S +I      G +  A  +F EM++ G
Sbjct: 441 IDIHAKAGFLDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 499

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
             PNL     ++  + KA+   + ++    +   G  PD      ++ V+      E  +
Sbjct: 500 CTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAE 559

Query: 502 LV--ECVEKS----NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID 555
            V  E  +K+        G +V L  +  ++E  ++     L   +  +V    CN L+ 
Sbjct: 560 AVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPT--CNSLLS 617

Query: 556 LCVNLNLLENACKLLELGLTLEVYTDIQS 584
             + +N +  A +LL+  L L +   +Q+
Sbjct: 618 TFLRVNKIAEAYELLQNMLALGLRPSLQT 646



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 2/187 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAV 220
           S +   Y+V +    K   L  A +LF +M+D+G  P+ VT++ ++   A+  N  N A+
Sbjct: 466 SPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQN-AL 524

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           + +  M + G +PD +TYS +++  G  G +E A  ++   + + W  D   +  L+ L+
Sbjct: 525 KLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLW 584

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           G AGN +     Y+ M   G++PN+ T N+LL T  R  +  +   + + M   GL P+ 
Sbjct: 585 GKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSL 644

Query: 341 NTYASLL 347
            TY  LL
Sbjct: 645 QTYTLLL 651



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 8/226 (3%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFE 224
           + Y   + +  K   LD A  ++  M   G+ PD  T+S +I+C  +  +LP  A + F 
Sbjct: 435 VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLP-AAHKLFC 493

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   GC P+ +TY+ M+D + +A N + A  LY   +N  +  D   +S ++++ G  G
Sbjct: 494 EMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCG 553

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA---KRPWQVKTIYKEMTDNGLSPNWN 341
             +    V+ EM+     P+   Y  L+D  G+A   ++ WQ    Y+ M   GL PN  
Sbjct: 554 YLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQ---WYQAMLHAGLRPNVP 610

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           T  SLL  + R     +   + + M   G++ S+  Y  LL+ C D
Sbjct: 611 TCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTD 656


>gi|115489794|ref|NP_001067384.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|77556813|gb|ABA99609.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649891|dbj|BAF30403.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|125580213|gb|EAZ21359.1| hypothetical protein OsJ_37016 [Oryza sativa Japonica Group]
          Length = 859

 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 228/497 (45%), Gaps = 17/497 (3%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G K D  +++T+I             +  + M S  C P  +TY+ +I AYGRA  +  A
Sbjct: 361 GFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREA 420

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             +++  +   +  D   + TLI ++   G  +  +++Y  M+ +G+ P+  TY+ +++ 
Sbjct: 421 VKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYSAMVNC 480

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +G+         ++ EM +NG +PN  TY  ++    +AR  E+ + +Y++M+  G +  
Sbjct: 481 LGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPD 540

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
              Y+ ++ +    G+ DEA  +F +M+   +  PD   +  ++ +    G V +A   +
Sbjct: 541 KITYSIVMEVLGHCGHLDEAEAVFIEMR--HDWAPDEPVYGLLVDLWGKAGNVDKALGWY 598

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           + ML+ G +PN+    SL+  + K  R  D    L  +   G+ P  +    LL+  T+ 
Sbjct: 599 HAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLSCCTEA 658

Query: 495 PKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF----NSISKDVKKAYC 550
            + ++G   + +  +     ++  L L + +  G   ++ T  F    +S  ++ K+   
Sbjct: 659 -QAQMGLCCQLMAITGHP-AHMFLLYLPDAEPGGQNVRDHTRYFLDMMHSEDRESKRGLM 716

Query: 551 NCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIW 609
           + +ID      L E A  + E+     VY D ++ + P+ W ++L  +S G A+TAL   
Sbjct: 717 DAVIDFLHKSGLKEEAGFIWEVAAQRNVYPDSVREKDPSYWLINLHLMSEGTAVTALSRT 776

Query: 610 INDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFES-----HLKELNAPFHDSPDK 664
           +    + + +  + P  + I TG G+ +    G + V +S     HL E   PF  +   
Sbjct: 777 LAWFHRQILTMGKCPERIDIVTGWGR-RSRVTGSSLVRQSVQKLLHLFEF--PFVTTRGN 833

Query: 665 VGWFLTTEAAAKSWLES 681
            G F+        WL +
Sbjct: 834 TGCFVGCGEPLNRWLHN 850


>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 845

 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 120/515 (23%), Positives = 219/515 (42%), Gaps = 35/515 (6%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +    + +      RL D+M+  G KP+ VT++ LI      N  N+A+  F++M 
Sbjct: 352 YTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQ 411

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC+PD +TY ++ID + +AG +++A  +Y R +      D   +S +I   G AG+  
Sbjct: 412 EAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKAGHLP 471

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++ EM   G  PN++T+N ++    +A+       +Y++M + G  P+  TY+ ++
Sbjct: 472 AAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVM 531

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
              G   + E+   V+ EM+ K       +Y  L+ +    G  ++A++ +++M  +   
Sbjct: 532 EVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQEMLHA-GL 590

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+  T +S+++      ++SEA  +   ML  G  P+L   T L+ C   A+   D+  
Sbjct: 591 RPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFDM-- 648

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIE 527
                          FCG L+ V        L K+            +V   L       
Sbjct: 649 --------------GFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFL------- 687

Query: 528 GDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRS 586
                   +  +S  ++ K+   + ++D      L E A  + E+     VY D ++ +S
Sbjct: 688 --------DFMHSEDRESKRGLMDAVVDFLHKSGLKEEAGSVWEVAAVKNVYPDALREKS 739

Query: 587 PTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLA 644
            + W ++L  +S G A+ AL   +    K +    + P  + I TG G+         + 
Sbjct: 740 CSYWLINLHVMSEGTAVIALSRTLAWFRKQMLVTGDCPSRIDIVTGWGRRSRVTGTSMVR 799

Query: 645 SVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWL 679
              E  L   N PF       G F+      K WL
Sbjct: 800 QAVEELLNIFNFPFFTENGNSGCFVGCGEPLKKWL 834



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 96/193 (49%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +   Y+V +    K   L  A RLF +M+ +G  P+ VTF+ +I+          A++
Sbjct: 451 SPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALK 510

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            +  M + G  PD +TYS +++  G  G +E A G++   + + W  D   +  L+ L+G
Sbjct: 511 LYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWG 570

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AGN +     Y+EM   G++PN+ T N+LL T  R  R  +   + + M   GL P+  
Sbjct: 571 KAGNVEKAWQWYQEMLHAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQ 630

Query: 342 TYASLLRAYGRAR 354
           TY  LL     AR
Sbjct: 631 TYTLLLSCCTDAR 643


>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
          Length = 977

 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/496 (22%), Positives = 224/496 (45%), Gaps = 16/496 (3%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G K D  T++T++             +  + M   GC P+ +TY+ +I +YGRA  +  A
Sbjct: 476 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 535

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             ++++ +    + D   + TLI ++  AG  D  +++Y+ M+A G+ P+  TY+ +++ 
Sbjct: 536 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 595

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +G+A        ++ EM D G +PN  TY  ++  + +AR  ++ L +YR+M+  G +  
Sbjct: 596 LGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPD 655

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
              Y+ ++ +    GY +EA  +F +M+  +N  PD   +  ++ +    G V +A   +
Sbjct: 656 KVTYSIVMEVLGHCGYLEEAEAVFTEMQQ-KNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 714

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ- 493
             ML AG  PN+    SL+  + +  +  +    L  +  LG+ P  +    LL+  T  
Sbjct: 715 QAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDG 774

Query: 494 TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----DFKKEAT---ELFNSISKDVK 546
             K ++G   + +  +    G+   + L +    G    + +  A    +L +S  ++ K
Sbjct: 775 RSKLDMGFCGQLMAST----GHPAHMFLLKMPAAGPDGENVRNHANNFLDLMHSEDRESK 830

Query: 547 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTA 605
           +   + ++D        E A  + E+     V+ D ++ +S + W ++L  +S G A+TA
Sbjct: 831 RGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTA 890

Query: 606 LHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELNAPFHDSPD 663
           L   +    K + +    P  + I TG G+         +    E  L    +PF     
Sbjct: 891 LSRTLAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFFTESG 950

Query: 664 KVGWFLTTEAAAKSWL 679
             G F+ +      WL
Sbjct: 951 NSGCFVGSGEPLNRWL 966



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 152/329 (46%), Gaps = 11/329 (3%)

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
           +N   RID    + ++K     GN  G    Y   +  G K +  TY  ++  +GRAK+ 
Sbjct: 440 QNLGLRIDAYQANQVLKQMNDYGNALGFF--YWLKRQPGFKHDGHTYTTMVGNLGRAKQF 497

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
             +  +  EM  +G  PN  TY  L+ +YGRA Y  + ++V+ +M+E G +     Y TL
Sbjct: 498 GAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTL 557

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           + + A  G+ D A ++++ M++     PD++T+S +I      G +  A  +F EM++ G
Sbjct: 558 IDIHAKAGFLDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 616

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
             PNL     ++  + KA+   + ++    +   G  PD      ++ V+      E  +
Sbjct: 617 CTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAE 676

Query: 502 LV--ECVEKS----NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID 555
            V  E  +K+        G +V L  +  ++E  ++     L   +  +V    CN L+ 
Sbjct: 677 AVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPT--CNSLLS 734

Query: 556 LCVNLNLLENACKLLELGLTLEVYTDIQS 584
             + +N +  A +LL+  L L +   +Q+
Sbjct: 735 TFLRVNKIAEAYELLQNMLALGLRPSLQT 763



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 2/187 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAV 220
           S +   Y+V +    K   L  A +LF +M+D+G  P+ VT++ ++   A+  N  N A+
Sbjct: 583 SPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQN-AL 641

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           + +  M + G +PD +TYS +++  G  G +E A  ++   + + W  D   +  L+ L+
Sbjct: 642 KLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLW 701

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           G AGN +     Y+ M   G++PN+ T N+LL T  R  +  +   + + M   GL P+ 
Sbjct: 702 GKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSL 761

Query: 341 NTYASLL 347
            TY  LL
Sbjct: 762 QTYTLLL 768



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 8/226 (3%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFE 224
           + Y   + +  K   LD A  ++  M   G+ PD  T+S +I+C  +  +LP  A + F 
Sbjct: 552 VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLP-AAHKLFC 610

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   GC P+ +TY+ M+D + +A N + A  LY   +N  +  D   +S ++++ G  G
Sbjct: 611 EMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCG 670

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA---KRPWQVKTIYKEMTDNGLSPNWN 341
             +    V+ EM+     P+   Y  L+D  G+A   ++ WQ    Y+ M   GL PN  
Sbjct: 671 YLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQ---WYQAMLHAGLRPNVP 727

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           T  SLL  + R     +   + + M   G++ S+  Y  LL+ C D
Sbjct: 728 TCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTD 773


>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 879

 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 133/549 (24%), Positives = 245/549 (44%), Gaps = 47/549 (8%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV----------KP----DNVTFSTLI 207
           + E  LYN+   +     D  +A ++   + D  V          +P    D  T++T++
Sbjct: 336 ATEKTLYNLNFSI-----DAYQANQILKQLQDHSVAVGFFCWLKRQPGFWHDGHTYTTMV 390

Query: 208 SC---ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
                AR     NK +E   +M   GC P+ +TY+ +I +YGRA  +  A  ++++ +  
Sbjct: 391 GILGRAREFGAINKLLE---QMVKDGCQPNVVTYNRLIHSYGRANYLREALNVFNQMQEM 447

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
               D   + TLI ++  AG  D  +++YE M+ +G+ P+  TY+ +++ +G++      
Sbjct: 448 GCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAA 507

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
             ++ EM D G  PN  TY  L+    +AR  +  L +YR+M+  G +     Y+ ++ +
Sbjct: 508 HRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDKVTYSIVMEV 567

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
               GY +EA  +F +M+ + +  PD   +  ++ +    G V +A   ++ ML AG  P
Sbjct: 568 LGHCGYLEEAEAVFFEMRQN-HWVPDEPVYGLLVDLWGKAGNVEKAWEWYHTMLRAGLLP 626

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT--QTPKEELGKL 502
           N+    SL+  + +  R  D    L  +  LG+ P  +    LL+  T  Q+P  ++G  
Sbjct: 627 NVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLSCCTEAQSPY-DMGFC 685

Query: 503 VECVEKSNSKLGYVVKLLLEEQDIEG-------DFKKEATELFNSISKDVKKAYCNCLID 555
            E +  S    G+     L+     G       D   +  +L +S  ++ K+   + ++D
Sbjct: 686 CELMAVS----GHPAHAFLQSMPAAGPDGQNVRDHVSKFLDLMHSEDREGKRGLVDAVVD 741

Query: 556 LCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIWINDLS 614
                 L E A  + E+     VY D ++ +S   W ++L  +S G A+TAL   +    
Sbjct: 742 FLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKSTCYWLINLHVMSDGTAVTALSRTLAWFR 801

Query: 615 KALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKEL----NAPFHDSPDKVGWFLT 670
           + + +    P  + I TG G+   S    +S+    ++EL    + PF       G F+ 
Sbjct: 802 RQMLASGVGPNRIDIVTGWGRR--SRVTGSSLVRQAVQELLHVFSFPFFTENSNSGCFVG 859

Query: 671 TEAAAKSWL 679
                  WL
Sbjct: 860 CGEPLSQWL 868


>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 187/383 (48%), Gaps = 13/383 (3%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVI-LYNVTMKVFRKCRDLDKAERLFDDMLDRGV 196
           IL+ +   +   +A+  F        + + +YN  M V+ +  + +K   +F+ M +RG 
Sbjct: 236 ILSVLGKANQEGIAVEIFAKAESVIADTVQVYNAMMGVYARNGNFEKVNEMFNLMRERGC 295

Query: 197 KPDNVTFSTLI-----SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
           +PD V+F+TLI     SCA ++ L   A+E  + +  FG  PD +TY+++I A  R  N+
Sbjct: 296 EPDIVSFNTLINAKVKSCATVSGL---AIELLDEVGKFGLRPDIITYNTLISACSRESNL 352

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           + A G++    + + + D   ++ +I +YG  G      +++E++K+ G  P+ +TYN+L
Sbjct: 353 KEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSL 412

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           L    +     +V+ I +EM   G   +  TY +++  YG+    ++ L +YR+MK  G 
Sbjct: 413 LYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGR 472

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
                 Y  L+ +       +EA ++  +M  +   +P   T+S++I   +  G+  EAE
Sbjct: 473 NPDAVTYTVLIDLLGKASKIEEASKVMSEMLDA-GVKPTLHTYSALICAYAKVGRRVEAE 531

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
             FN M E+G + +    + ++  + +             + E G TPD      +L  +
Sbjct: 532 ETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVMLPAL 591

Query: 492 TQTPKEELGKLVECVEKSNSKLG 514
               +E +G ++E V +   +LG
Sbjct: 592 V---RENMGDVIERVVQDTKELG 611



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 146/674 (21%), Positives = 265/674 (39%), Gaps = 103/674 (15%)

Query: 97   TRYNSLVKLAADLDSCSATED-----DVFSVLRCLG---DDFLEQDCVIILNNMTNPDTA 148
            T Y SL+        C+ +E       +FS +R  G    + L Q  V +   +  P+TA
Sbjct: 718  TMYESLIH------ECTKSEQFDIASQLFSDMRFNGVEPSECLYQSMVSVYCRIGFPETA 771

Query: 149  ALALTYFTNKLKASKEVILYNVTMKV------FRKCRDLDKAERLFDDMLDRGVKPDNVT 202
               L Y   K     ++IL NVT+ +      + K +    AE + +++  R  K D   
Sbjct: 772  Q-HLLYHAEK----NDIILDNVTVHIIDIIETYGKLKMWQSAESIVENLRQRCSKMDRKV 826

Query: 203  FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
            ++ LI     +    +A   F  M   G  P   + + ++ A    G +   + +    +
Sbjct: 827  WNALIHAYAFSGCYERARAIFNTMMREGPSPTVESVNGLLQALIVDGRLSELYVVIQELQ 886

Query: 263  NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
            +   +I  ++   +++ +  AGN      VY  MKA G  P M  Y  ++  + R KR  
Sbjct: 887  DMDLKISKSSILLMLEAFAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVR 946

Query: 323  QVK-----------------------------------TIYKEMTDNGLSPNWNTYASLL 347
             V+                                    IY+ + D GL+P+  TY +L+
Sbjct: 947  DVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLI 1006

Query: 348  RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
              Y R    E+ LS+  +MK  G++     Y +++A  +     D+A E+FE+++S+   
Sbjct: 1007 TMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSN-GY 1065

Query: 408  QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            + D   +  M+ +    G   +AE +   M EAG EPN   +  L+  YGK+ + ++  R
Sbjct: 1066 KLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEADR 1125

Query: 468  ALNRLPELG-----------------------------------ITPDDRFCGCLLNVMT 492
             L  L  +G                                   I PD R   C +   +
Sbjct: 1126 ILKNLRTMGAVLDTLPYSSVIDAYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAAS 1185

Query: 493  QTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCN 551
             + +  +   L+  ++     L   ++LL E+ +       +       +  +    + N
Sbjct: 1186 LSGEVNDANNLLNALQAVGFDLP--IRLLGEKSESLVSEVDQCLGRLEHVEDNAAFNFVN 1243

Query: 552  CLIDLCVNLNLLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTALHIWI 610
             L+DL     L   A  + +L +   +Y  DI   +   W    + LS G+AL  L +W+
Sbjct: 1244 ALVDLLWAFELRATASWVFQLAIKRSIYRHDIFRVAQKDWGADFRKLSAGSALVGLTLWL 1303

Query: 611  NDLSKA-LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFL 669
            + +  A L+   E P  + + TG    +Y+   L S  ++ L E+ +PF     + G  +
Sbjct: 1304 DHMQDASLQGYPESPKSVVLITGTA--EYNMVSLDSTLKAFLWEMGSPFLPCKTRHGVLV 1361

Query: 670  TTEAAAKSWLESRS 683
                + + WL+  S
Sbjct: 1362 AKAHSLRMWLKDSS 1375



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 111/256 (43%), Gaps = 2/256 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  + V+ +C    KAE LF+ +   G  PD VT+++L+          K  +  E M 
Sbjct: 374 YNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMV 433

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G   D +TY+++I  YG+ G  + A  LY   ++     D   ++ LI L G A   +
Sbjct: 434 KMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIE 493

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V  EM   GVKP + TY+ L+    +  R  + +  +  M ++G+  +   Y+ +L
Sbjct: 494 EASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVML 553

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             + R    +   ++Y+EM E G      LY  +L         D    + +D K   + 
Sbjct: 554 DFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVMLPALVRENMGDVIERVVQDTKELGSM 613

Query: 408 QPDSWTFSSMITICSC 423
            P     SS++    C
Sbjct: 614 NPHD--ISSVLVKGGC 627


>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
 gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
 gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
 gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 114/496 (22%), Positives = 224/496 (45%), Gaps = 16/496 (3%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G K D  T++T++             +  + M   GC P+ +TY+ +I +YGRA  +  A
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             ++++ +    + D   + TLI ++  AG  D  +++Y+ M+A G+ P+  TY+ +++ 
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +G+A        ++ EM D G +PN  TY  ++  + +AR  ++ L +YR+M+  G +  
Sbjct: 479 LGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPD 538

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
              Y+ ++ +    GY +EA  +F +M+  +N  PD   +  ++ +    G V +A   +
Sbjct: 539 KVTYSIVMEVLGHCGYLEEAEAVFTEMQQ-KNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ- 493
             ML AG  PN+    SL+  + +  +  +    L  +  LG+ P  +    LL+  T  
Sbjct: 598 QAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDG 657

Query: 494 TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----DFKKEAT---ELFNSISKDVK 546
             K ++G   + +  +    G+   + L +    G    + +  A    +L +S  ++ K
Sbjct: 658 RSKLDMGFCGQLMAST----GHPAHMFLLKMPAAGPDGENVRNHANNFLDLMHSEDRESK 713

Query: 547 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTA 605
           +   + ++D        E A  + E+     V+ D ++ +S + W ++L  +S G A+TA
Sbjct: 714 RGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTA 773

Query: 606 LHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELNAPFHDSPD 663
           L   +    K + +    P  + I TG G+         +    E  L    +PF     
Sbjct: 774 LSRTLAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFFTESG 833

Query: 664 KVGWFLTTEAAAKSWL 679
             G F+ +      WL
Sbjct: 834 NSGCFVGSGEPLNRWL 849



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 152/329 (46%), Gaps = 11/329 (3%)

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
           +N   RID    + ++K     GN  G    Y   +  G K +  TY  ++  +GRAK+ 
Sbjct: 323 QNLGLRIDAYQANQVLKQMNDYGNALGFF--YWLKRQPGFKHDGHTYTTMVGNLGRAKQF 380

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
             +  +  EM  +G  PN  TY  L+ +YGRA Y  + ++V+ +M+E G +     Y TL
Sbjct: 381 GAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTL 440

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           + + A  G+ D A ++++ M++     PD++T+S +I      G +  A  +F EM++ G
Sbjct: 441 IDIHAKAGFLDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 499

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
             PNL     ++  + KA+   + ++    +   G  PD      ++ V+      E  +
Sbjct: 500 CTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAE 559

Query: 502 LV--ECVEKS----NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID 555
            V  E  +K+        G +V L  +  ++E  ++     L   +  +V    CN L+ 
Sbjct: 560 AVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPT--CNSLLS 617

Query: 556 LCVNLNLLENACKLLELGLTLEVYTDIQS 584
             + +N +  A +LL+  L L +   +Q+
Sbjct: 618 TFLRVNKIAEAYELLQNMLALGLRPSLQT 646



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 2/187 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAV 220
           S +   Y+V +    K   L  A +LF +M+D+G  P+ VT++ ++   A+  N  N A+
Sbjct: 466 SPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQN-AL 524

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           + +  M + G +PD +TYS +++  G  G +E A  ++   + + W  D   +  L+ L+
Sbjct: 525 KLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLW 584

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           G AGN +     Y+ M   G++PN+ T N+LL T  R  +  +   + + M   GL P+ 
Sbjct: 585 GKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSL 644

Query: 341 NTYASLL 347
            TY  LL
Sbjct: 645 QTYTLLL 651



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 8/226 (3%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFE 224
           + Y   + +  K   LD A  ++  M   G+ PD  T+S +I+C  +  +LP  A + F 
Sbjct: 435 VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLP-AAHKLFC 493

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   GC P+ +TY+ M+D + +A N + A  LY   +N  +  D   +S ++++ G  G
Sbjct: 494 EMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCG 553

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA---KRPWQVKTIYKEMTDNGLSPNWN 341
             +    V+ EM+     P+   Y  L+D  G+A   ++ WQ    Y+ M   GL PN  
Sbjct: 554 YLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQ---WYQAMLHAGLRPNVP 610

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           T  SLL  + R     +   + + M   G++ S+  Y  LL+ C D
Sbjct: 611 TCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTD 656


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 164/319 (51%), Gaps = 1/319 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + + YN  + V+ K R   +A  +  +M   G  P  VT+++LIS    + L ++A+E
Sbjct: 323 SPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAME 382

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
              +M   G  PD  TY++++  + + G  + A  +++  R    + +   F+ LIK++G
Sbjct: 383 LKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHG 442

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             GNF   + V+EE+K     P+++T+N LL   G+     +V  ++KEM   G  P  +
Sbjct: 443 NRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERD 502

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+ +L+ AY R  + +  +++YR M + G+   ++ YN +LA  A  G  +++ ++  +M
Sbjct: 503 TFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEM 562

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K    C+P+  T+ S++   +   +V    A+  E+     EP   +L +L+  Y K+  
Sbjct: 563 KDGR-CKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDL 621

Query: 462 TDDVVRALNRLPELGITPD 480
             +  RA   L E G +PD
Sbjct: 622 LTETERAFLELREQGFSPD 640



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 170/371 (45%), Gaps = 40/371 (10%)

Query: 149 ALALTYFTNKLKASKEVI---LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           AL + YF    +    ++   +  V + V  K      A  L  D+ + GV  D   +++
Sbjct: 166 ALCVFYFVRNREDFASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTS 225

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNE 264
           LI+    N    +AV  F+++   GC P  +TY+ +++ YG+ G       GL D  ++ 
Sbjct: 226 LITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSS 285

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
               D   ++TLI        ++    V+EEMKA G  P+ +TYN LLD  G+++RP + 
Sbjct: 286 GVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREA 345

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
             + KEM  +G +P+  TY SL+ AY R    ++ + +  +M +KG++  V  Y TLL+ 
Sbjct: 346 MEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSG 405

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM-------------------ITICSC-- 423
               G  D A ++FE+M+ +  CQP+  TF+++                   I IC C  
Sbjct: 406 FEKTGKDDYAMKVFEEMRVA-GCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVP 464

Query: 424 --------------RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
                          G  SE   +F EM  AGF P      +LI  Y +    D  +   
Sbjct: 465 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIY 524

Query: 470 NRLPELGITPD 480
            R+ + G+TPD
Sbjct: 525 RRMLDAGVTPD 535



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 144/318 (45%), Gaps = 7/318 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N  +  + +C   D+A  ++  MLD GV PD  T++ +++      L  ++ +    M 
Sbjct: 504 FNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMK 563

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGN 285
              C P+ LTY S++ AY     VE    L +   +    I+P A    TL+ +Y  +  
Sbjct: 564 DGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYS--GIIEPQAVLLKTLVLVYSKSDL 621

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                  + E++  G  P++ T N ++   GR +   +   I   + D+G +P+  TY S
Sbjct: 622 LTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNS 681

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  Y R  + E +  + RE+  KGM+  +  +NT++      G   EA  IF +MK   
Sbjct: 682 LMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDF- 740

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              PD  T+++ I   +      EA  +   M++   +PN     SLI  + K  R D+ 
Sbjct: 741 GLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEA 800

Query: 466 VRALNRLPEL--GITPDD 481
              ++ L  L   +T D+
Sbjct: 801 NSFISNLRNLDPSVTKDE 818



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/386 (20%), Positives = 154/386 (39%), Gaps = 71/386 (18%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ YN  +  + +   LD+A  L   M+ +G+KPD  T++TL+S        + A++ FE
Sbjct: 361 IVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFE 420

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGN-VEM------------------------------ 253
            M   GC P+  T++++I  +G  GN VEM                              
Sbjct: 421 EMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNG 480

Query: 254 ----AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-------- 301
                 G++   +   +  + + F+TLI  Y   G FD  + +Y  M   GV        
Sbjct: 481 MDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYN 540

Query: 302 ---------------------------KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
                                      KPN +TY +LL      K   ++  + +E+   
Sbjct: 541 AVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSG 600

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
            + P      +L+  Y ++    +T   + E++E+G    +T  N ++++        + 
Sbjct: 601 IIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKT 660

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            EI   +K S    P   T++S++ + S      ++E +  E++  G +P++    ++I 
Sbjct: 661 NEILNFIKDS-GFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIF 719

Query: 455 CYGKAQRTDDVVRALNRLPELGITPD 480
            Y +  R  +  R    + + G+ PD
Sbjct: 720 AYCRNGRMKEASRIFAEMKDFGLAPD 745



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 142/295 (48%), Gaps = 3/295 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ +N  + VF +     +   +F +M   G  P+  TF+TLIS        ++A+  +
Sbjct: 465 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIY 524

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            RM   G  PD  TY++++ A  R G  E +  +    ++ + + +   + +L+  Y   
Sbjct: 525 RRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANG 584

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              +    + EE+ +  ++P  +    L+    ++    + +  + E+ + G SP+  T 
Sbjct: 585 KEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTL 644

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +++  YGR R    T  +   +K+ G   S+T YN+L+ M +   + +++ +I  ++  
Sbjct: 645 NAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREI-I 703

Query: 404 SENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           ++  +PD  +F+++I    CR G++ EA  +F EM + G  P++    + I  Y 
Sbjct: 704 AKGMKPDIISFNTVI-FAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYA 757



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 118/258 (45%), Gaps = 35/258 (13%)

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I   G+ G    A  L    RN+   ID  A+++LI  Y + G +   + V+++++  G
Sbjct: 191 IISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEG 250

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
            +P +ITYN +L+  G+   P                  W+  A L+ +           
Sbjct: 251 CRPTLITYNVILNVYGKMGMP------------------WSKIAGLVDS----------- 281

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
                MK  G+   +  YNTL++ C      +EA E+FE+MK++    PD  T+++++ +
Sbjct: 282 -----MKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAA-GFSPDKVTYNALLDV 335

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
                +  EA  +  EM  +GF P++    SLI  Y +    D+ +   +++ + GI PD
Sbjct: 336 YGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPD 395

Query: 481 DRFCGCLLNVMTQTPKEE 498
                 LL+   +T K++
Sbjct: 396 VFTYTTLLSGFEKTGKDD 413



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 83/184 (45%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + +L    + V+ K   L + ER F ++ ++G  PD  T + ++S      + +K  E  
Sbjct: 605 QAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEIL 664

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             +   G  P   TY+S++  Y R  + E +  +      +  + D  +F+T+I  Y   
Sbjct: 665 NFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRN 724

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       ++ EMK  G+ P++ITYN  + +        +   + K M  N   PN NTY
Sbjct: 725 GRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTY 784

Query: 344 ASLL 347
            SL+
Sbjct: 785 NSLI 788



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/238 (19%), Positives = 110/238 (46%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   +  +   +++++   L +++    ++P  V   TL+     ++L  +    F  
Sbjct: 572 LTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLE 631

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +   G  PD  T ++M+  YGR   V     + +  ++  +      +++L+ +Y    +
Sbjct: 632 LREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEH 691

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F+   ++  E+ A G+KP++I++N ++    R  R  +   I+ EM D GL+P+  TY +
Sbjct: 692 FEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNT 751

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            + +Y       + + V + M +   + +   YN+L+     +   DEA     ++++
Sbjct: 752 FIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEANSFISNLRN 809



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 72/152 (47%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S ++   N  + ++ + R + K   + + + D G  P   T+++L+          K+ +
Sbjct: 638 SPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSED 697

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
               + + G  PD ++++++I AY R G ++ A  ++   ++     D   ++T I  Y 
Sbjct: 698 ILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYA 757

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           +   F   ++V + M     KPN  TYN+L+D
Sbjct: 758 SDSMFIEAIDVVKYMIKNECKPNQNTYNSLID 789



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 8/111 (7%)

Query: 164 EVILYNVTMKVFRKCRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           ++I +N    +F  CR+  + +A R+F +M D G+ PD +T++T I+    +++  +A++
Sbjct: 710 DIISFNTV--IFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAID 767

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
             + M    C P+  TY+S+ID + +    + A       RN    +DP+ 
Sbjct: 768 VVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEANSFISNLRN----LDPSV 814


>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
 gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
          Length = 853

 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 121/498 (24%), Positives = 228/498 (45%), Gaps = 19/498 (3%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G K D  T++T+I             +  + M    C P  +TY+ +I AYGRA  ++ A
Sbjct: 355 GFKHDGHTYTTMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEA 414

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             +++  +   +  D   + TLI ++  AG  D  +++Y  M+ +G+ P+  TY+ +++ 
Sbjct: 415 VKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMVNC 474

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +G+  +      ++ EM +NG +PN  TY  ++    +AR  E+ + +Y++M+  G +  
Sbjct: 475 LGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPD 534

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
              Y+ ++ +    G+ DEA  +F +M+   +  PD   +  ++ +    G V +A   +
Sbjct: 535 KITYSIVMEVLGHCGHLDEAEAVFIEMR--RDWAPDEPVYGLLVDLWGKAGNVDKALGWY 592

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
             ML+ G +PN+    SL+  + K  R  D    L  +   G+ P  +    LL+  T+ 
Sbjct: 593 QAMLQDGLQPNVPTCNSLLSAFLKMNRFQDAYIVLQNMLAQGLVPSVQTYTLLLSCCTEA 652

Query: 495 PKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF----NSISKDVKKAYC 550
            + ++G L   +        ++  L L + +  G   ++ T  F    +S  ++ K+   
Sbjct: 653 -QAQMG-LCGQLMAITGHPAHMFLLYLPDAEPGGQNVRDHTGYFLDMMHSEDRESKRGLM 710

Query: 551 NCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALH-- 607
           + +ID      L E A  + E+     VY D ++ +S + W ++L  +S G A+TAL   
Sbjct: 711 DAVIDFLHKSGLKEEAGLIWEVAAQKNVYPDSVREKSSSYWLINLHLMSEGTAVTALSRT 770

Query: 608 -IWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNA---PFHDSPD 663
             W +     L +G   P  + I TG G+ +    G + V +S  K LN    PF  +  
Sbjct: 771 LAWFHRQILTLGTG---PERIDIVTGWGR-RSRVTGSSLVRQSVQKLLNLFEFPFFTTRG 826

Query: 664 KVGWFLTTEAAAKSWLES 681
             G F+        WL +
Sbjct: 827 NTGCFVGCGEPLNKWLHN 844



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           ++ G +     Y T++ +           ++ ++M S  +C+P   T++ +I        
Sbjct: 352 RQPGFKHDGHTYTTMIGILGQARQFGVLKKLLDEM-SRAHCKPTVVTYNRIIHAYGRANY 410

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
           + EA  +F EM EAG+EP+     +LI  + KA   D  +    R+ E+G++PD      
Sbjct: 411 LKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSA 470

Query: 487 LLNVM 491
           ++N +
Sbjct: 471 MVNCL 475



 Score = 43.5 bits (101), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A   F+ +K     + D  T+++MI I     +    + + +EM  A  +P +     +I
Sbjct: 343 ALGFFQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRII 402

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
             YG+A    + V+    + E G  P DR   C L
Sbjct: 403 HAYGRANYLKEAVKVFEEMQEAGYEP-DRVTYCTL 436


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 164/319 (51%), Gaps = 1/319 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + + YN  + V+ K R   +A  +  +M   G  P  VT+++LIS    + L ++A+E
Sbjct: 323 SPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAME 382

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
              +M   G  PD  TY++++  + + G  + A  +++  R    + +   F+ LIK++G
Sbjct: 383 LKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHG 442

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             GNF   + V+EE+K     P+++T+N LL   G+     +V  ++KEM   G  P  +
Sbjct: 443 NRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERD 502

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+ +L+ AY R  + +  +++YR M + G+   ++ YN +LA  A  G  +++ ++  +M
Sbjct: 503 TFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEM 562

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K    C+P+  T+ S++   +   +V    A+  E+     EP   +L +L+  Y K+  
Sbjct: 563 KDGR-CKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDL 621

Query: 462 TDDVVRALNRLPELGITPD 480
             +  RA   L E G +PD
Sbjct: 622 LTETERAFLELREQGFSPD 640



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 170/371 (45%), Gaps = 40/371 (10%)

Query: 149 ALALTYFTNKLKASKEVI---LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           AL + YF    +    ++   +  V + V  K      A  L  D+ + GV  D   +++
Sbjct: 166 ALCVFYFVRNREDFASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTS 225

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNE 264
           LI+    N    +AV  F+++   GC P  +TY+ +++ YG+ G       GL D  ++ 
Sbjct: 226 LITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSS 285

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
               D   ++TLI        ++    V+EEMKA G  P+ +TYN LLD  G+++RP + 
Sbjct: 286 GVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREA 345

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
             + KEM  +G +P+  TY SL+ AY R    ++ + +  +M +KG++  V  Y TLL+ 
Sbjct: 346 MEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSG 405

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM-------------------ITICSC-- 423
               G  D A ++FE+M+ +  CQP+  TF+++                   I IC C  
Sbjct: 406 FEKTGKDDYAMKVFEEMRVA-GCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVP 464

Query: 424 --------------RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
                          G  SE   +F EM  AGF P      +LI  Y +    D  +   
Sbjct: 465 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIY 524

Query: 470 NRLPELGITPD 480
            R+ + G+TPD
Sbjct: 525 RRMLDAGVTPD 535



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 145/318 (45%), Gaps = 7/318 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N  +  + +C   D+A  ++  MLD GV PD  T++ +++      L  ++ +    M 
Sbjct: 504 FNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMK 563

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGN 285
              C P+ LTY S++ AY     VE    L +   +    I+P A    TL+ +Y  +  
Sbjct: 564 DGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYS--GIIEPQAVLLKTLVLVYSKSDL 621

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                  + E++  G  P++ T N ++   GR +   +   I   + D+G +P+  TY S
Sbjct: 622 LTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNS 681

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  Y R  + E +  + RE+  KGM+  +  +NT++      G   EA  IF +MK   
Sbjct: 682 LMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDF- 740

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              PD  T+++ I   +      EA  +   M++ G +PN     SLI  + K  R D+ 
Sbjct: 741 GLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEA 800

Query: 466 VRALNRLPEL--GITPDD 481
              ++ L  L   +T D+
Sbjct: 801 SSFISNLRNLDPSVTKDE 818



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/386 (20%), Positives = 154/386 (39%), Gaps = 71/386 (18%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ YN  +  + +   LD+A  L   M+ +G+KPD  T++TL+S        + A++ FE
Sbjct: 361 IVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFE 420

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGN-VEM------------------------------ 253
            M   GC P+  T++++I  +G  GN VEM                              
Sbjct: 421 EMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNG 480

Query: 254 ----AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-------- 301
                 G++   +   +  + + F+TLI  Y   G FD  + +Y  M   GV        
Sbjct: 481 MDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYN 540

Query: 302 ---------------------------KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
                                      KPN +TY +LL      K   ++  + +E+   
Sbjct: 541 AVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSG 600

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
            + P      +L+  Y ++    +T   + E++E+G    +T  N ++++        + 
Sbjct: 601 IIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKT 660

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            EI   +K S    P   T++S++ + S      ++E +  E++  G +P++    ++I 
Sbjct: 661 NEILNFIKDS-GFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIF 719

Query: 455 CYGKAQRTDDVVRALNRLPELGITPD 480
            Y +  R  +  R    + + G+ PD
Sbjct: 720 AYCRNGRMKEASRIFAEMKDFGLAPD 745



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 118/258 (45%), Gaps = 35/258 (13%)

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I   G+ G    A  L    RN+   ID  A+++LI  Y + G +   + V+++++  G
Sbjct: 191 IISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEG 250

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
            +P +ITYN +L+  G+   P                  W+  A L+ +           
Sbjct: 251 CRPTLITYNVILNVYGKMGMP------------------WSKIAGLVDS----------- 281

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
                MK  G+   +  YNTL++ C      +EA E+FE+MK++    PD  T+++++ +
Sbjct: 282 -----MKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAA-GFSPDKVTYNALLDV 335

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
                +  EA  +  EM  +GF P++    SLI  Y +    D+ +   +++ + GI PD
Sbjct: 336 YGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPD 395

Query: 481 DRFCGCLLNVMTQTPKEE 498
                 LL+   +T K++
Sbjct: 396 VFTYTTLLSGFEKTGKDD 413



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 111/238 (46%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   +  +   +++++   L +++    ++P  V   TL+     ++L  +    F  
Sbjct: 572 LTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLE 631

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +   G  PD  T ++M+  YGR   V     + +  ++  +      +++L+ +Y    +
Sbjct: 632 LREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEH 691

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F+   ++  E+ A G+KP++I++N ++    R  R  +   I+ EM D GL+P+  TY +
Sbjct: 692 FEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNT 751

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            + +Y       + + V + M + G + +   YN+L+     +   DEA     ++++
Sbjct: 752 FIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLRN 809



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 73/152 (48%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S ++   N  + ++ + R + K   + + + D G  P   T+++L+          K+ +
Sbjct: 638 SPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSED 697

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
               + + G  PD ++++++I AY R G ++ A  ++   ++     D   ++T I  Y 
Sbjct: 698 ILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYA 757

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           +   F   ++V + M   G KPN  TYN+L+D
Sbjct: 758 SDSMFIEAIDVVKYMIKNGCKPNQNTYNSLID 789



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 8/111 (7%)

Query: 164 EVILYNVTMKVFRKCRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           ++I +N    +F  CR+  + +A R+F +M D G+ PD +T++T I+    +++  +A++
Sbjct: 710 DIISFNTV--IFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAID 767

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
             + M   GC P+  TY+S+ID + +    + A       RN    +DP+ 
Sbjct: 768 VVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLRN----LDPSV 814


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 133/548 (24%), Positives = 253/548 (46%), Gaps = 53/548 (9%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I +N  + V  K    + A  L  +M++RG+  D  T++TL+         + A E    
Sbjct: 184 ITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSE 243

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           MP+    P+ +TYS+MID Y +AG ++ A  L++  +     +D  +++TL+ +Y   G 
Sbjct: 244 MPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGR 303

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F+  ++V  EM+  G++ +++TYN LL   G+  +   V+ +++EM    +SPN  TY++
Sbjct: 304 FEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYST 363

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSS 404
           L+  Y +     + + V+RE K+ G++  V LY+ L+ A+C + G  + A  + ++M + 
Sbjct: 364 LIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKN-GLVESAVSLLDEM-TK 421

Query: 405 ENCQPDSWTFSSMI----------TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS--- 451
           E  +P+  T++S+I          ++    G+ SE +   + +  +  E     L +   
Sbjct: 422 EGIRPNVVTYNSIIDAFGRPATTESVVDDAGQTSELQ--IDSLSSSAVEKATKSLVADRE 479

Query: 452 ---LIQCYGK-------------AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
              +I+ +G+              Q    ++   +++ EL I P+      +LN  ++  
Sbjct: 480 DNRIIKIFGQLAAEKAGQAKNSGGQEMMCILGVFHKMHELEIKPNVVTFSAILNACSRCN 539

Query: 496 K-EELGKLVECVEK-SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS---KDVKKAYC 550
             EE   L+E +    N   G    LL+  ++   +  ++A  LF+ +         A+ 
Sbjct: 540 SFEEASMLLEELRLFDNQVYGVAHGLLMGYRE---NVWEQAQSLFDEVKLMDSSTASAFY 596

Query: 551 NCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWI 610
           N L D+  +      A  ++  G   +V+ ++ S S     L L  +S GAA   +H W+
Sbjct: 597 NALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSES----CLDLHLMSSGAARAMVHAWL 652

Query: 611 NDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLT 670
            ++   +  G E P LL    G       D  L    E+ L  + APF  +   +G  ++
Sbjct: 653 LNVRAIVFEGHEVPKLLSKVVG-------DSTLRRAVEALLMGMGAPFRSAKCNLGRLIS 705

Query: 671 TEAAAKSW 678
           T +   SW
Sbjct: 706 TGSVVASW 713



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 153/295 (51%), Gaps = 9/295 (3%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           +FD+ML  G++PD +TF++L++      L   A      M + G D D  TY++++DA  
Sbjct: 170 IFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVC 229

Query: 247 RAGNVEMAFGLYDR--ARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
           + G ++MAF +     A+N    I PN   +ST+I  Y  AG  D   N++ EMK +G+ 
Sbjct: 230 KGGQLDMAFEIMSEMPAKN----ILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGIS 285

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
            + ++YN LL    +  R  +   + +EM ++G+  +  TY +LL  YG+    +    V
Sbjct: 286 LDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKV 345

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
           + EMK + +  ++  Y+TL+ + +  G   EA ++F + K +   + D   +S++I    
Sbjct: 346 FEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKA-GLKADVVLYSALIDALC 404

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
             G V  A ++ +EM + G  PN+    S+I  +G+   T+ VV    +  EL I
Sbjct: 405 KNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRPATTESVVDDAGQTSELQI 459



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 150/300 (50%), Gaps = 2/300 (0%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           ++A ++F  M D G+KP+ VT++ +I +C +      + +E F+ M   G  PD +T++S
Sbjct: 129 NEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNS 188

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           ++    + G  E A  L     N     D   ++TL+      G  D    +  EM A  
Sbjct: 189 LLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKN 248

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           + PN++TY+ ++D   +A R    + ++ EM   G+S +  +Y +LL  Y +    E+ +
Sbjct: 249 ILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAM 308

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            V REM+  G++  V  YN LL         D   ++FE+MK + +  P+  T+S++I +
Sbjct: 309 DVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMK-ARHVSPNLLTYSTLIDV 367

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            S  G   EA  +F E  +AG + ++ + ++LI    K    +  V  L+ + + GI P+
Sbjct: 368 YSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN 427



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 164/339 (48%), Gaps = 8/339 (2%)

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           S+MI   GR G VEMA  ++  A  E +     AFS +I  YG +G  +  + ++  MK 
Sbjct: 81  SAMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKD 140

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
            G+KPN++TYN ++D  G+    ++ V  I+ EM  NG+ P+  T+ SLL    +    E
Sbjct: 141 YGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWE 200

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
              S+  EM  +G+   +  YNTLL      G  D AFEI  +M  ++N  P+  T+S+M
Sbjct: 201 AARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEM-PAKNILPNVVTYSTM 259

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I   +  G++ +A  +FNEM   G   +     +L+  Y K  R ++ +     +   GI
Sbjct: 260 IDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGI 319

Query: 478 TPDDRFCGCLLNVMTQTPKEE-LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536
             D      LL    +  K + + K+ E ++  +     +    L +   +G   +EA +
Sbjct: 320 RKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMD 379

Query: 537 LFNSISKDVKKA---YCNCLID-LCVNLNLLENACKLLE 571
           +F    K   KA     + LID LC N  L+E+A  LL+
Sbjct: 380 VFREFKKAGLKADVVLYSALIDALCKN-GLVESAVSLLD 417



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 107/259 (41%), Gaps = 37/259 (14%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  ++ Y+  + V+ K     +A  +F +    G+K D V +S LI     N L   AV 
Sbjct: 355 SPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVS 414

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST------ 275
             + M   G  P+ +TY+S+IDA+GR    E      D  +  + +ID  + S       
Sbjct: 415 LLDEMTKEGIRPNVVTYNSIIDAFGRPATTESVVD--DAGQTSELQIDSLSSSAVEKATK 472

Query: 276 ----------LIKLY--------GTAGNFDG-----CLNVYEEMKAIGVKPNMITYNNLL 312
                     +IK++        G A N  G      L V+ +M  + +KPN++T++ +L
Sbjct: 473 SLVADREDNRIIKIFGQLAAEKAGQAKNSGGQEMMCILGVFHKMHELEIKPNVVTFSAIL 532

Query: 313 DTMGRAKRPWQVKTIYKEMT--DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           +   R     +   + +E+   DN +   +     LL  Y R    E   S++ E+K   
Sbjct: 533 NACSRCNSFEEASMLLEELRLFDNQV---YGVAHGLLMGY-RENVWEQAQSLFDEVKLMD 588

Query: 371 MQLSVTLYNTLLAMCADVG 389
              +   YN L  M    G
Sbjct: 589 SSTASAFYNALTDMLWHFG 607


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/535 (23%), Positives = 248/535 (46%), Gaps = 27/535 (5%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERM 226
           +N  +    +   L+ A  LFD+M+  G+  D  T++T I +  +  N+   A++    M
Sbjct: 307 FNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNI-ELAMQVLLDM 365

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            +    P+ +TYS++ID Y +    + A  LY++ ++   ++D   ++T++ +Y  AG +
Sbjct: 366 EAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKY 425

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                V +EM+  G++ + +TYN+L++  G+  R   V  + ++M   G++P+  TY++L
Sbjct: 426 GEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTL 485

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  Y +A    D  +VY + KE G++  V L+++ +   A  G  + A  +  DM +   
Sbjct: 486 IDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLVEWALSLLNDM-TEMG 544

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA------Q 460
            +P+  T++++I        +SE +    EM   G      +  +     G++      +
Sbjct: 545 IKPNVVTYNTIIDAFGKSKVLSEEDPEAGEMGIVGVYNGQIIRAANPVTRGRSAIDVRMR 604

Query: 461 RTDD---VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK-SNSKLGY 515
           R+ +   ++    ++ + G+ P+      +LN  ++    E+   L+E +    N   G 
Sbjct: 605 RSQELYFILELFQKMVQQGVRPNVVTFSAILNACSRCNNFEDAALLLEQLRLFDNFVYGV 664

Query: 516 VVKLLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACKLLEL 572
              LL+  Q+I      +A  LFN + +       A+ N L D+  +    + A  ++  
Sbjct: 665 AYGLLMGYQEIW----SQAQSLFNQLGRMDSPTSSAFYNALTDVLWHFGQRQGAQLVVLE 720

Query: 573 GLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTG 632
           G+   V+ +  S    ++ L L  +S GAA   +H W+ ++   +  G   P  L I TG
Sbjct: 721 GVNRRVWDNTWS----EFCLDLHLMSCGAAQAMVHAWLLNVRSIVFEGRAMPEFLSILTG 776

Query: 633 HGKHK--YSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSL 685
            GKH        L  V E+ L  + APF      +G F++  A   +WL    ++
Sbjct: 777 WGKHSKIAGASTLRHVIEALLNSIGAPFQVERFNIGRFVSPSAVVAAWLRESGTM 831



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 141/300 (47%), Gaps = 2/300 (0%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D A R FD  +  G        S LIS    + L N+A+   E M   G  P  +TY+++
Sbjct: 215 DLARRAFDAGIAGGYGNTVFANSALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAV 274

Query: 242 IDAYGRAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           IDA G+ G ++    G + +   ++   D   F++L+     AG+ +    +++EM  +G
Sbjct: 275 IDACGKGGVDLRFTLGYFRQMLRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLG 334

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           +  ++ TYN  +D + +         +  +M    + PN  TY++L+  Y +    ++ L
Sbjct: 335 IGRDIYTYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEAL 394

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            +Y +MK  G+QL    YNT+LA+    G   E   + ++M+ S   + D+ T++S+I  
Sbjct: 395 KLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDS-GIEKDTVTYNSLING 453

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              +G++     +  +M   G  P++   ++LI  Y KA    D         E G+ PD
Sbjct: 454 YGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPD 513



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 140/304 (46%), Gaps = 25/304 (8%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L      L    + + YN  + ++ K     +   + D+M D G++ D VT+++LI+
Sbjct: 393 ALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLIN 452

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   +      + M   G  P  LTYS++ID Y +AG    AF +Y   +    + 
Sbjct: 453 GYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKP 512

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   FS+ I      G  +  L++  +M  +G+KPN++TYN ++D  G++K   +     
Sbjct: 513 DVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIIDAFGKSKVLSEEDPEA 572

Query: 329 KEMTDNGLSPNWNTYASLLRAYG---RARYGEDT-----------LSVYREMKEKGMQLS 374
            EM   G+   +N    ++RA     R R   D            L ++++M ++G++ +
Sbjct: 573 GEM---GIVGVYN--GQIIRAANPVTRGRSAIDVRMRRSQELYFILELFQKMVQQGVRPN 627

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV-SEAEAM 433
           V  ++ +L  C+     ++A  + E ++  +N     + +     +     ++ S+A+++
Sbjct: 628 VVTFSAILNACSRCNNFEDAALLLEQLRLFDN-----FVYGVAYGLLMGYQEIWSQAQSL 682

Query: 434 FNEM 437
           FN++
Sbjct: 683 FNQL 686


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 161/309 (52%), Gaps = 1/309 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +NV M  F+K + +D   +LF++M ++   P+ +T+S LI          KA++ F  M 
Sbjct: 127 FNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMK 186

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S GC P+  TY+SMID  G++G+V+ AF L++   +E        +++LI   G +G  D
Sbjct: 187 SRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRAD 246

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++ EM + G++P+ +T+ +L+  +G A R  + + I++E  D G + + N Y  L+
Sbjct: 247 AAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLI 306

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +++  ++   ++ E++E G+   V  +N L+      G   +AF +  DMK +  C
Sbjct: 307 DTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRA-GC 365

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD   ++++I      G+V EA  +  EM   G+EP++    +LI    K  R +D +R
Sbjct: 366 TPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALR 425

Query: 468 ALNRLPELG 476
               +   G
Sbjct: 426 LFEEISAKG 434



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 159/313 (50%), Gaps = 1/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +  F K     KA  ++  M   G++PD  TF+ L++  +     +   + FE M 
Sbjct: 92  YNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQ 151

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           +  C P+ +TYS +IDA  + G VE A  ++   ++   R +   ++++I   G +G+ D
Sbjct: 152 NQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVD 211

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++EEM + G+    + YN+L+  +GR+ R      +++EM   GL P+  T+ SL+
Sbjct: 212 KAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLV 271

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
              G A    +   +++E ++ G  L V LYN L+         DEA+EIF +++  +  
Sbjct: 272 YGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELE-EDGL 330

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD +TF++++      G++ +A  +  +M  AG  P++ V  +LI    K+ R ++  +
Sbjct: 331 VPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQ 390

Query: 468 ALNRLPELGITPD 480
            L  +  LG  PD
Sbjct: 391 LLLEMQSLGYEPD 403



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 130/267 (48%), Gaps = 1/267 (0%)

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
            L  K+VE  +RM    C   A  Y+S+IDA+ +AG  + A  +Y        R D   F
Sbjct: 68  GLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTF 127

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           + L+  +  A   D    ++EEM+     PN+ITY+ L+D + +     +   ++ +M  
Sbjct: 128 NVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKS 187

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
            G  PN  TY S++   G++ + +    ++ EM  +G+  +  +YN+L+      G  D 
Sbjct: 188 RGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADA 247

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A ++F +M  S+  QPD  TF+S++      G+ SEA  +F E  + G   ++ +   LI
Sbjct: 248 AAKLFREM-LSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLI 306

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPD 480
               K++R D+       L E G+ PD
Sbjct: 307 DTLCKSKRLDEAWEIFGELEEDGLVPD 333



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 124/259 (47%), Gaps = 1/259 (0%)

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           +  +   Y  AG +E +     R    +  +  +A+++LI  +  AG     L VY  M 
Sbjct: 57  FIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMG 116

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
             G++P+  T+N L++   +AKR   V  +++EM +   SPN  TY+ L+ A  +    E
Sbjct: 117 QSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVE 176

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
             L V+ +MK +G + ++  Y +++      G+ D+AF +FE+M +SE        ++S+
Sbjct: 177 KALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEM-TSEGLVATRVVYNSL 235

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I      G+   A  +F EML  G +P+    TSL+   G A R  +  R      ++G 
Sbjct: 236 IHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGC 295

Query: 478 TPDDRFCGCLLNVMTQTPK 496
             D      L++ + ++ +
Sbjct: 296 ALDVNLYNVLIDTLCKSKR 314



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 123/256 (48%), Gaps = 4/256 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++YN  +    +    D A +LF +ML +G++PD+VTF++L+    +    ++A   F+ 
Sbjct: 230 VVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQE 289

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
               GC  D   Y+ +ID   ++  ++ A+ ++     +    D   F+ L+     +G 
Sbjct: 290 ARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGR 349

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 +  +MK  G  P++  YN L+D + ++ R  +   +  EM   G  P+  TY +
Sbjct: 350 IHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNT 409

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+    +    ED L ++ E+  KG   +VT YNT+L      G  DEA+++F  MK   
Sbjct: 410 LIDESCKGGRIEDALRLFEEISAKGFANTVT-YNTILNGLCMAGRVDEAYKLFNGMKQET 468

Query: 406 ---NCQPDSWTFSSMI 418
                 PD  T+++++
Sbjct: 469 VDGVIDPDFVTYTTLL 484


>gi|356526577|ref|XP_003531893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Glycine max]
          Length = 878

 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 150/629 (23%), Positives = 280/629 (44%), Gaps = 83/629 (13%)

Query: 118 DVFSVLRCLGDDFLEQDCV----IILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVT 171
           +  S+LR +G   LE + V    II        T  + + +    + A    + + YN  
Sbjct: 243 EAVSLLRSMGKFGLEPNLVTYNAIIDAGAKGELTFEIVVKFLEEMIAAGCMPDRLTYNSL 302

Query: 172 MKV------FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC----ARMNNLPNKAVE 221
           +K       ++ CRDL        +M  +G+  D  T++T +       RM+ L   A++
Sbjct: 303 LKTCVAKGRWKLCRDL------LAEMEWKGIGRDVYTYNTYVDALCKGGRMD-LARHAID 355

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
               MP+    P+ +TYS+++  Y +A   E A  +YD  ++   R+D  +++TL+ LY 
Sbjct: 356 --VEMPAKNIWPNVVTYSTLMAGYSKAERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYA 413

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G F+  +  ++EM+  G+K +++TYN L++  GR  +  +V+ ++ EM    + PN  
Sbjct: 414 NLGWFEEAVGKFKEMECCGIKNDVVTYNALIEGYGRHNKYVEVQKLFDEMKARRIYPNDL 473

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFED 400
           TY++L++ Y + R   + + VYRE+K++GM+  V  Y+ L+ A+C + G  + +  +  D
Sbjct: 474 TYSTLIKIYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDALCKN-GLIESSLRLL-D 531

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG---FEP------------- 444
           + + +  +P+  T++S+I       ++   E   +   +A     +P             
Sbjct: 532 VMTEKGSRPNVVTYNSIIDAFKIGQQLPALECAVDTPFQANEHQIKPSSSRLIVGNFQDQ 591

Query: 445 ------NLFVLTSLIQCYG---------KAQRTDD--VVRALNRLPELGITPDDRFCGCL 487
                 N  ++  L Q            K  R D+  +V+   ++ E+ I P+      +
Sbjct: 592 KTDIGNNDEIMKMLEQLAAEKAGLTKKDKRSRQDNFFIVQIFQKMHEMEIKPNVVTFSAI 651

Query: 488 LNVMTQTPK-EELGKLVECVEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSISKDV 545
           LN  +     ++  KL++ +   +S++ G    LL+  +    D  +   +    +    
Sbjct: 652 LNACSCCETFQDASKLLDALRVFDSQVYGVAHGLLMGHRQGIWDQTQTLFDELEHLDSST 711

Query: 546 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQW-------SLHLKSLS 598
             A+ N L D+  +           +LG  + V   I+ R+   W       SL L   S
Sbjct: 712 ASAFYNALTDMLWHFG--------QKLGAQMVV---IEGRNRNVWKGGWSTESLDLHLTS 760

Query: 599 LGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHK--YSDKGLASVFESHLKELNA 656
            GAA   +H W+ +L   +  G++ PP+L I TG GKH     +  L    E+ L  + A
Sbjct: 761 CGAACAMVHTWLLELRTTVFGGQKLPPILSILTGWGKHSKVVGNGTLRKAVEALLNGIGA 820

Query: 657 PFHDSPDKVGWFLTTEAAAKSWLESRSSL 685
           PF  S   +G F +      +WL   S+L
Sbjct: 821 PFQISECNLGRFKSEGPEVAAWLRQPSTL 849



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 200/441 (45%), Gaps = 27/441 (6%)

Query: 63  PQYPHGKTGSSPKSYIWVNPKSPRA---SKLKEKSYDTRYNSLVKLAADLDSCSATEDDV 119
           P++   ++  +P     +N   PRA   ++   K+ +   +SL     D+ +     D V
Sbjct: 92  PEFSGRRSNRNPGK---MNSGGPRAVPNNQQHSKAAEEVLHSLTNAGNDVSAI----DSV 144

Query: 120 FSVLRCLGDDFLEQDCVIILNNMTNPDTAALAL-TYFTNKLKASKEVILYNVTMKVFRKC 178
               R     ++ +D V +L    N     LA  TY     +A+    +  +T  + R  
Sbjct: 145 LLHYRL----YVAEDYVYLLKEFANTGDLLLATRTYDFAMSRATDNTFMGKLTSNMIRTL 200

Query: 179 RDLDKAE---RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
             L K E    LF++   RG      +FS +IS    NN  ++AV     M  FG +P+ 
Sbjct: 201 GRLKKIELALDLFEESRTRGYGNTVYSFSAMISALGRNNRFSEAVSLLRSMGKFGLEPNL 260

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI----DPNAFSTLIKLYGTAGNFDGCLN 291
           +TY+++IDA  +    E+ F +  +   E        D   +++L+K     G +  C +
Sbjct: 261 VTYNAIIDAGAKG---ELTFEIVVKFLEEMIAAGCMPDRLTYNSLLKTCVAKGRWKLCRD 317

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKR-PWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
           +  EM+  G+  ++ TYN  +D + +  R       I  EM    + PN  TY++L+  Y
Sbjct: 318 LLAEMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAIDVEMPAKNIWPNVVTYSTLMAGY 377

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
            +A   ED L++Y EMK   ++L    YNTL+ + A++G+ +EA   F++M+     + D
Sbjct: 378 SKAERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECC-GIKND 436

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
             T++++I       K  E + +F+EM      PN    ++LI+ Y K +   + +    
Sbjct: 437 VVTYNALIEGYGRHNKYVEVQKLFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYR 496

Query: 471 RLPELGITPDDRFCGCLLNVM 491
            L + G+  D  F   L++ +
Sbjct: 497 ELKQEGMKTDVVFYSALIDAL 517



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 165/375 (44%), Gaps = 77/375 (20%)

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           S+MI   GR   +E+A  L++ +R   +     +FS +I   G    F   +++   M  
Sbjct: 194 SNMIRTLGRLKKIELALDLFEESRTRGYGNTVYSFSAMISALGRNNRFSEAVSLLRSMGK 253

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIY-KEMTDNGLSPNWNTYASLLR---AYGRAR 354
            G++PN++TYN ++D   + +  +++   + +EM   G  P+  TY SLL+   A GR +
Sbjct: 254 FGLEPNLVTYNAIIDAGAKGELTFEIVVKFLEEMIAAGCMPDRLTYNSLLKTCVAKGRWK 313

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLL-AMC-----------ADV-------------- 388
              D L+   EM+ KG+   V  YNT + A+C            DV              
Sbjct: 314 LCRDLLA---EMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAIDVEMPAKNIWPNVVTY 370

Query: 389 -----GYT-----DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
                GY+     ++A  I+++MK     + D  ++++++ + +  G   EA   F EM 
Sbjct: 371 STLMAGYSKAERFEDALNIYDEMKHLL-IRLDRVSYNTLVGLYANLGWFEEAVGKFKEME 429

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
             G + ++    +LI+ YG+  +  +V +  + +    I P+D     L+ + T+     
Sbjct: 430 CCGIKNDVVTYNALIEGYGRHNKYVEVQKLFDEMKARRIYPNDLTYSTLIKIYTKG---- 485

Query: 499 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID-LC 557
                              ++  E  D+  + K+E       +  DV   + + LID LC
Sbjct: 486 -------------------RMYAEAMDVYRELKQEG------MKTDV--VFYSALIDALC 518

Query: 558 VNLNLLENACKLLEL 572
            N  L+E++ +LL++
Sbjct: 519 KN-GLIESSLRLLDV 532


>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
 gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 855

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/515 (23%), Positives = 219/515 (42%), Gaps = 35/515 (6%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +    + +   +  +L D+M+  G KP+ VT++ LI      N   +A+  F +M 
Sbjct: 362 YTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQ 421

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC+PD +TY ++ID + +AG +++A  +Y R +      D   +S +I   G AG+  
Sbjct: 422 EAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLP 481

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++ EM   G  PN++T+N ++    +A+       +Y++M + G  P+  TY+ ++
Sbjct: 482 AAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVM 541

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
              G   + E+   V+ EM+ K       +Y  L+ +    G  D+A++ ++ M  +   
Sbjct: 542 EVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQA-GL 600

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+  T +S+++      ++SEA  +   ML  G  P+L   T L+ C   A+   D+  
Sbjct: 601 RPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFDM-- 658

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIE 527
                          FCG L+ V        L K+            +V   L       
Sbjct: 659 --------------GFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFL------- 697

Query: 528 GDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRS 586
                   +  +S  ++ K+   + ++D      L E A  + E+     VY D ++ +S
Sbjct: 698 --------DFMHSEDRESKRGLMDAVVDFLHKSGLKEEAGSVWEVAAGKNVYPDALREKS 749

Query: 587 PTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLA 644
            + W ++L  +S G A+ AL   +    K +    + P  + I TG G+         + 
Sbjct: 750 YSYWLINLHVMSEGTAVIALSRTLAWFRKQMLVSGDCPSRIDIVTGWGRRSRVTGTSMVR 809

Query: 645 SVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWL 679
              E  L   N PF       G F+ +    K+WL
Sbjct: 810 QAVEELLNIFNFPFFTENGNSGCFVGSGEPLKNWL 844



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 95/193 (49%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +   Y+V +    K   L  A RLF +M+ +G  P+ VTF+ +I+          A++
Sbjct: 461 SPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALK 520

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            +  M + G  PD +TYS +++  G  G +E A G++   + + W  D   +  L+ L+G
Sbjct: 521 LYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWG 580

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AGN D     Y+ M   G++PN+ T N+LL T  R  R  +   + + M   GL P+  
Sbjct: 581 KAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQ 640

Query: 342 TYASLLRAYGRAR 354
           TY  LL     AR
Sbjct: 641 TYTLLLSCCTDAR 653


>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
 gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
          Length = 821

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 168/333 (50%), Gaps = 2/333 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAV 220
           S +V  Y   +  + +C   ++A  +F+ M + G+ P  VT++ ++    +M    NK +
Sbjct: 206 SLDVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKIL 265

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
              + M S G   D  T S++I A GR G ++ A   +   +++ +      ++ L++++
Sbjct: 266 GLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVF 325

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           G AG +   L++ +EM+     P+ +TYN L+    RA    +   +   MT+NG+ PN 
Sbjct: 326 GKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNA 385

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY +++ AYGRA   +  LS+Y +MKE G   +V  YN +L M      ++E  +I  D
Sbjct: 386 VTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCD 445

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           MK  + C P+  T+++M+++C  +G     + +F EM   GFEP+     +LI   G+  
Sbjct: 446 MKV-DGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCG 504

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
              D  +  + + E G TP       LLN + +
Sbjct: 505 SDIDAEKIYDEMLEAGFTPSVATYNALLNALAR 537



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 171/342 (50%), Gaps = 2/342 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKC-RDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A+A+    N+   S  ++ YNV + V+ K  R  +K   L D+M  +G+  D  T ST+I
Sbjct: 228 AVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFTCSTVI 287

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           S      L ++A E+F  + S G  P  +TY++++  +G+AG    A  +     +    
Sbjct: 288 SACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCP 347

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   ++ L+  Y  AG ++    + + M   G+KPN +TY  +++  GRA +  +  ++
Sbjct: 348 PDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSL 407

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           Y +M ++G +PN  TY ++L   G+    E+ + +  +MK  G   +   +NT+L+MC +
Sbjct: 408 YDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGN 467

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G       +F++MKS    +PD  TF+++IT     G   +AE +++EMLEAGF P++ 
Sbjct: 468 KGMHKYVKRVFQEMKSC-GFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVA 526

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
              +L+    +          +  +   G  P +     +LN
Sbjct: 527 TYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILN 568



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 147/315 (46%), Gaps = 1/315 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  ++VF K     +A  +  +M D    PD VT++ L++         +     + 
Sbjct: 316 VTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDT 375

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P+A+TY++MI+AYGRA  V+ A  LYD+ +      +   ++ ++ + G    
Sbjct: 376 MTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQ 435

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  + +  +MK  G  PN IT+N +L   G       VK +++EM   G  P+ +T+ +
Sbjct: 436 SEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNT 495

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ A GR     D   +Y EM E G   SV  YN LL   A  G    A  + +DMK ++
Sbjct: 496 LITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMK-NK 554

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +P   ++S ++   +  G V     +  ++ +    P+  +L +LI    K +    +
Sbjct: 555 GFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGM 614

Query: 466 VRALNRLPELGITPD 480
            RA   L + G  PD
Sbjct: 615 ERAFQALQKHGYKPD 629



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 139/292 (47%), Gaps = 21/292 (7%)

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           NL N+AVE   R+                   GR     +A  L+D    + + +D  A+
Sbjct: 171 NLDNQAVELMARI------------------LGRESQHSIASKLFDVIPLDDYSLDVRAY 212

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMT 332
           +T++  Y   G ++  + ++E+M   G+ P ++TYN +LD  G+  R W ++  +  EM 
Sbjct: 213 TTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMR 272

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             GL  +  T ++++ A GR    ++    +  +K +G       YN LL +    G   
Sbjct: 273 SKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYS 332

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           EA  I ++M+ + NC PD+ T++ ++      G   E  A+ + M E G +PN    T++
Sbjct: 333 EALSIMKEMEDN-NCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTM 391

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM-TQTPKEELGKLV 503
           I  YG+A + D  +   +++ E G  P+      +L ++  ++  EE+ K++
Sbjct: 392 INAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKIL 443



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 151/315 (47%), Gaps = 1/315 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  YN  + +  K    ++  ++  DM   G  P+ +T++T++S      +       F+
Sbjct: 420 VCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQ 479

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M S G +PD  T++++I A GR G+   A  +YD      +      ++ L+      G
Sbjct: 480 EMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRG 539

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           ++    +V ++MK  G KP+  +Y+ +L++  +      +  I K++ D  + P+W    
Sbjct: 540 DWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLR 599

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+ A  + R        ++ +++ G +  + ++N++L+M +     D A EI   ++  
Sbjct: 600 TLILANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQEC 659

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              QPD  T++S++ + +  G+  +AE +  E+  +G + +L    ++I+ + +     +
Sbjct: 660 -GLQPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHE 718

Query: 465 VVRALNRLPELGITP 479
            +R L+ +   GI P
Sbjct: 719 ALRTLSEMISRGIRP 733



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 85/178 (47%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           KCR L   ER F  +   G KPD V F++++S     N+ ++A E    +   G  PD +
Sbjct: 607 KCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLV 666

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           TY+S++D Y R G    A  +    +N   + D  +++T+IK +   G     L    EM
Sbjct: 667 TYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEM 726

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
            + G++P ++TYN  +          ++  +   MT +   PN  TY  ++  Y +A+
Sbjct: 727 ISRGIRPCIVTYNTFVGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKAK 784



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/286 (19%), Positives = 123/286 (43%), Gaps = 36/286 (12%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N  +    +C     AE+++D+ML+ G  P   T++ L++          A    + M 
Sbjct: 493 FNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMK 552

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVE-------------------------------MAFG 256
           + G  P   +YS ++++Y + G V+                                A  
Sbjct: 553 NKGFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALA 612

Query: 257 LYDRA----RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
             +RA    +   ++ D   F++++ ++      D    +   ++  G++P+++TYN+L+
Sbjct: 613 GMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLM 672

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           D   R    W+ + I +E+ ++G   +  +Y ++++ + R     + L    EM  +G++
Sbjct: 673 DLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIR 732

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
             +  YNT +   A  G   E  E+   M +  +C+P+  T+  ++
Sbjct: 733 PCIVTYNTFVGGYAAKGMFAEIDEVLSYM-TKHDCRPNELTYKIVV 777



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 43/85 (50%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I YN  +K F +   + +A R   +M+ RG++P  VT++T +       +  +  E  
Sbjct: 699 DLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVGGYAAKGMFAEIDEVL 758

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRA 248
             M    C P+ LTY  ++D Y +A
Sbjct: 759 SYMTKHDCRPNELTYKIVVDGYCKA 783



 Score = 40.4 bits (93), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 136 VIILNNM------TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFD 189
           +++ N+M       N    A  + +   +     +++ YN  M ++ +  +  KAE +  
Sbjct: 630 LVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEILR 689

Query: 190 DMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
           ++ + G K D ++++T+I       L ++A+     M S G  P  +TY++ +  Y   G
Sbjct: 690 ELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVGGYAAKG 749


>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74750-like [Glycine max]
          Length = 873

 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 128/556 (23%), Positives = 225/556 (40%), Gaps = 57/556 (10%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
           IL  + +P  A     +   +     +   Y   + +  + R  D   +L + M+  G +
Sbjct: 350 ILKQLQDPSVALGFFDWLRRQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQ 409

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           P+ VT++ LI C    N   +A+  F  M   GC+PD +TY ++ID + +AG +++A  +
Sbjct: 410 PNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSM 469

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
           Y R +      D   +S +I   G AGN      ++ EM   G  PN++TYN ++    +
Sbjct: 470 YKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAK 529

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
           A+       +Y +M + G  P+  TY+ ++ A G   Y E+  SV+ EM++K        
Sbjct: 530 ARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQK-------- 581

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
                                       N  PD   +  ++ +    G V +A   +  M
Sbjct: 582 ----------------------------NWVPDEPVYGLLVDLWGKAGNVEKASEWYQAM 613

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT-PK 496
           L AG  PN+    SL+  + +  R  D    +  +  LG+ P  +    LL+  T+  P 
Sbjct: 614 LNAGLLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVALGLRPSLQTYTLLLSCCTEAQPA 673

Query: 497 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-------DFKKEATELFNSISKDVKKAY 549
            ++G   E +  +    G+     L      G       D   +  ++ ++  ++ K+  
Sbjct: 674 HDMGFFCELMAVT----GHPAHAFLLSMPAAGPDGQNVRDHVSKFLDMMHTEDREGKRGL 729

Query: 550 CNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALH- 607
            + +++      L E A  + E      VY D ++ +S   W ++L  +S G A+TAL  
Sbjct: 730 VDSVVNFLNKSGLKEEAGSVWEAAAQRNVYPDAVKEKSSRYWLINLHVMSDGTAVTALSR 789

Query: 608 --IWINDLSKALESGEEFPPLLGINTGHGKH-KYSDKGLA-SVFESHLKELNAPFHDSPD 663
              W     + L SG   P  + I TG G+  K +   L     +  L   + PF     
Sbjct: 790 TLAWFRQ--RMLVSGIR-PSRVDIITGWGRRSKVTGSSLVRQAVQDLLHTFSFPFLAEKG 846

Query: 664 KVGWFLTTEAAAKSWL 679
             G F+        WL
Sbjct: 847 NSGCFVGCGEPLCQWL 862


>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 115/504 (22%), Positives = 231/504 (45%), Gaps = 43/504 (8%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  +    +    D+AE +F  M + G+ PD  T+S L+      N   K  E  
Sbjct: 251 DIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELL 310

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M S G  PD  +Y+ +++A+ ++G+++ A G++ + +      +   +S L+ LYG  
Sbjct: 311 KEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRH 370

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G +D   +++ EMK    +PN  TYN L++  G      +V T++ +M +  + PN  TY
Sbjct: 371 GRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETY 430

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             L+ A G+    ED   +   M EKG+  S   Y  ++         +EA   F  M  
Sbjct: 431 EGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNE 490

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               +P   T++S+I + +  G   E+EA+  +M ++G   N      +I+ + +  + +
Sbjct: 491 V-GSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFE 549

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNV-----MTQTPKEELGKLVECVEKSNSKLGYVVK 518
           + ++A   + +    PD++    +L+V     + +  +E+ G+ ++ +    S + Y + 
Sbjct: 550 EAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGE-IKALGILPSVMCYCMM 608

Query: 519 L--------------LLEE--------------QDIEGDFKKEAT-ELFNSISKDVKKAY 549
           L              LL+E              Q I GD+  ++  ++   + + +K   
Sbjct: 609 LAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQMIRGDYDDDSNWQMVEYVFEKLKSEG 668

Query: 550 C-------NCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAA 602
           C       N L++    L   E A ++L       ++ ++  ++   WS+ +  +  GAA
Sbjct: 669 CSLGVRFYNTLLEALWWLGQKERATRVLNEATKRGLFPELFRKNKLVWSVDVHRMWEGAA 728

Query: 603 LTALHIWINDLSKALESGEEFPPL 626
            TA+ +W+N++ +   SG++ P L
Sbjct: 729 CTAISVWLNNMHEMFISGDDLPQL 752



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 160/317 (50%), Gaps = 2/317 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y + + V  +   L+K + +FD+M   GV P   +F+ LI+    N     ++E  +RM
Sbjct: 148 IYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRM 207

Query: 227 PSFGCDPDALTYSSMIDAYGRAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
                 P  LTY+++I++  R G + E   GL+ + R+E  + D   ++TL+      G 
Sbjct: 208 KKERVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEGIQADIVTYNTLLSACARRGL 267

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D    V+  M   G+ P++ TY+ L++T G+  R  +V  + KEM   G  P+  +Y  
Sbjct: 268 GDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNV 327

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           LL A+ ++   ++ + V+R+M+  G   +   Y+ LL +    G  D+  ++F +MK S 
Sbjct: 328 LLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVS- 386

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           N +P++ T++ +I +    G   E   +F++M+E   EPN+     LI   GK    +D 
Sbjct: 387 NTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDA 446

Query: 466 VRALNRLPELGITPDDR 482
            + L  + E G+ P  +
Sbjct: 447 KKILLHMNEKGVVPSSK 463



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 174/355 (49%), Gaps = 16/355 (4%)

Query: 134 DCVIILNNMTN-PDTAALA--LTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDD 190
           D   ++N +++ P   ++A  L  F NKL  +     + +  K F +  D  ++ RLF  
Sbjct: 80  DVETLINKLSSLPPRGSIARCLDVFKNKLSLND----FALVFKEFAQRGDWQRSLRLFKY 135

Query: 191 MLDRGV--KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
           M  R +  KP+   ++ +I       L  K  E F+ MPS G  P   +++++I+AYGR 
Sbjct: 136 M-QRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAYGRN 194

Query: 249 GNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNM 305
           G  + +  L DR + E  R+ P+   ++T+I      G +++  L ++ +M+  G++ ++
Sbjct: 195 GQYKSSLELLDRMKKE--RVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEGIQADI 252

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           +TYN LL    R     + + +++ M + G+ P+  TY+ L+  +G+    E    + +E
Sbjct: 253 VTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKE 312

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M+  G    +T YN LL   A  G   EA  +F  M+ +  C P++ T+S ++ +    G
Sbjct: 313 MESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGA-GCVPNAATYSILLNLYGRHG 371

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  +   +F EM  +  EPN      LI  +G+     +VV   + + E  + P+
Sbjct: 372 RYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPN 426



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 5/240 (2%)

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQ 323
           K ++  N F+ + K +   G++   L +++ M + I  KPN   Y  ++  +GR     +
Sbjct: 105 KNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEK 164

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
            + I+ EM  +G++P+  ++ +L+ AYGR    + +L +   MK++ +  S+  YNT++ 
Sbjct: 165 CQEIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVIN 224

Query: 384 MCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            CA  G   +E   +F  M+  E  Q D  T++++++ C+ RG   EAE +F  M E G 
Sbjct: 225 SCARGGLDWEELLGLFAQMR-HEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGI 283

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP--KEELG 500
            P++   + L++ +GK  R + V   L  +   G  PD      LL    Q+   KE +G
Sbjct: 284 LPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMG 343



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 107/281 (38%), Gaps = 50/281 (17%)

Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD 180
            V+   G   L ++ ++  N M              N++ +   V  YN  +++F K   
Sbjct: 467 GVIEAYGQAALYEEALVAFNTM--------------NEVGSKPTVETYNSLIQMFAKGGL 512

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
             ++E +   M   GV  +  TF+ +I   R      +A++ +  M    CDPD  T  +
Sbjct: 513 YKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEA 572

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           ++  Y  AG VE +         E+                           + E+KA+G
Sbjct: 573 VLSVYCFAGLVEES--------EEQ---------------------------FGEIKALG 597

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGEDT 359
           + P+++ Y  +L    +A R      +  EM  N +S        ++R  Y      +  
Sbjct: 598 ILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQMIRGDYDDDSNWQMV 657

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
             V+ ++K +G  L V  YNTLL     +G  + A  +  +
Sbjct: 658 EYVFEKLKSEGCSLGVRFYNTLLEALWWLGQKERATRVLNE 698


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 193/386 (50%), Gaps = 18/386 (4%)

Query: 122 VLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDL 181
           +L CLG     ++ + IL  M               K+ A+  +  YN+ + +  K  +L
Sbjct: 383 ILTCLGRKGKVEEALRILEAM---------------KMDAAPNLTSYNILIDMLCKAGEL 427

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           + A ++ D M + G+ P+ +T + +I         ++A   F  +    C PD++T+ S+
Sbjct: 428 EAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSL 487

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           ID  GR G V  A+ LY++  +     +   +++LI+ +   G  +    +Y+EM   G 
Sbjct: 488 IDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGC 547

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            P+++  NN +D + +A    + + +++E+   GL+P+  +Y+ L+    +  + +DT  
Sbjct: 548 SPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYK 607

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           ++ EMKE+G+ L    YN ++      G  ++A+++ E+MK ++  QP   T+ S+I   
Sbjct: 608 LFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMK-TKGLQPTVVTYGSVIDGL 666

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +   ++ EA  +F E      + N+ V +SLI  +GK  R D+    L  L + G+TP+ 
Sbjct: 667 AKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNT 726

Query: 482 RFCGCLLNVMTQTPKEELGKLVECVE 507
               CLL+ + +   EE+ + + C +
Sbjct: 727 YTWNCLLDALVKA--EEIDEALVCFQ 750



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 147/316 (46%), Gaps = 3/316 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++Y   ++ F KC   +   +++ +M+ RG  PD +  +  + C        K    FE 
Sbjct: 517 VVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEE 576

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           + + G  PD  +YS +I    + G  +  + L+   + +   +D  A++ +I  +  +G 
Sbjct: 577 IKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGK 636

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    + EEMK  G++P ++TY +++D + +  R  +   +++E     +  N   Y+S
Sbjct: 637 VNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSS 696

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  +G+    ++   +  E+ +KG+  +   +N LL         DEA   F++MK+ +
Sbjct: 697 LIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLK 756

Query: 406 NCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            C P+  T+S M+  +C  R K ++A   + EM + G +PN    T++I    +     +
Sbjct: 757 -CPPNEVTYSIMVNGLCKVR-KFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLE 814

Query: 465 VVRALNRLPELGITPD 480
                 R    G  PD
Sbjct: 815 AKDLFERFKSSGGIPD 830



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 159/353 (45%), Gaps = 35/353 (9%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++LYNV +  F K   +D A + F ++  +G+ PD+VTF+++I         ++AVE F
Sbjct: 271 DLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELF 330

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN-------------------- 263
           E + S    P    Y++MI  YG  G    A+ L +R +                     
Sbjct: 331 EELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRK 390

Query: 264 ----------EKWRID--PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
                     E  ++D  PN  +++ LI +   AG  +  L V + MK  G+ PN+IT N
Sbjct: 391 GKVEEALRILEAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVN 450

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            ++D + +A+R  +  +I+  +     +P+  T+ SL+   GR     D   +Y +M + 
Sbjct: 451 IMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDS 510

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G   +  +Y +L+      G  ++  +I+++M     C PD    ++ +      G++ +
Sbjct: 511 GQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEM-MHRGCSPDLMLLNNYMDCVFKAGEIEK 569

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
             A+F E+   G  P++   + LI    K   + D  +    + E G+  D R
Sbjct: 570 GRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTR 622



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 129/251 (51%), Gaps = 1/251 (0%)

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
           +LF +M ++G+  D   ++ +I     +   NKA +  E M + G  P  +TY S+ID  
Sbjct: 607 KLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGL 666

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
            +   ++ A+ L++ A+++   ++   +S+LI  +G  G  D    + EE+   G+ PN 
Sbjct: 667 AKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNT 726

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
            T+N LLD + +A+   +    ++ M +    PN  TY+ ++    + R        ++E
Sbjct: 727 YTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQE 786

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M+++G++ +   Y T+++  A VG   EA ++FE  KSS    PDS  +++MI   S   
Sbjct: 787 MQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGI-PDSACYNAMIEGLSNAN 845

Query: 426 KVSEAEAMFNE 436
           K  +A  +F E
Sbjct: 846 KAMDAYILFEE 856



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 138/311 (44%), Gaps = 3/311 (0%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F K R L +A  + + M     +P    ++TLI      +  +  +    +M   G +  
Sbjct: 177 FVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVT 236

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
              ++++I  + R G V+ A  L D  ++  +  D   ++  I  +G  G  D     + 
Sbjct: 237 VHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFH 296

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           E+K+ G+ P+ +T+ +++  + +A+R  +   +++E+  N   P    Y +++  YG   
Sbjct: 297 ELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVG 356

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
              +  S+    K KG   SV  YN +L      G  +EA  I E MK   +  P+  ++
Sbjct: 357 KFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKM--DAAPNLTSY 414

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + +I +    G++  A  + + M EAG  PN+  +  +I    KAQR D+       L  
Sbjct: 415 NILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDH 474

Query: 475 LGITPDD-RFC 484
              TPD   FC
Sbjct: 475 KVCTPDSVTFC 485



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 154/346 (44%), Gaps = 13/346 (3%)

Query: 150 LALTYFTNKLKASKEVI---LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           +AL YF    + +K++     YN  + +  + R+L+  E++ ++M   G  P N T   +
Sbjct: 114 VALHYFRWVERKTKQLHSPEAYNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEM 173

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
           ++    +    +A    E M  F   P    Y+++I A   A   +    L  + +   +
Sbjct: 174 VASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGY 233

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
            +  + F+TLI ++   G  D  L++ +EMK+     +++ YN  +D  G+  +      
Sbjct: 234 EVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWK 293

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
            + E+   GL P+  T+ S++    +A   ++ + ++ E+        V  YNT++    
Sbjct: 294 FFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYG 353

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
            VG  +EA+ + E  K  + C P    ++ ++T    +GKV EA  +  E ++    PNL
Sbjct: 354 SVGKFNEAYSLLERQK-RKGCIPSVIAYNCILTCLGRKGKVEEALRIL-EAMKMDAAPNL 411

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 484
                LI    KA   +  ++  + + E G+ P+        DR C
Sbjct: 412 TSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLC 457



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 161/358 (44%), Gaps = 1/358 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +++L N  M    K  +++K   LF+++  +G+ PD  ++S LI             +
Sbjct: 548 SPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYK 607

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F  M   G   D   Y+ +ID + ++G V  A+ L +  + +  +     + ++I    
Sbjct: 608 LFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLA 667

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                D    ++EE K+  V  N++ Y++L+D  G+  R  +   I +E+   GL+PN  
Sbjct: 668 KIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTY 727

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+  LL A  +A   ++ L  ++ MK      +   Y+ ++     V   ++AF  +++M
Sbjct: 728 TWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEM 787

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           +  +  +P++ T+++MI+  +  G V EA+ +F     +G  P+     ++I+    A +
Sbjct: 788 Q-KQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANK 846

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKL 519
             D           G     + C  LL+ + +    E   +V  V +  +K  +  +L
Sbjct: 847 AMDAYILFEETRLKGCRIYSKTCVVLLDALHKADCLEQAAIVGAVLREMAKSQHATRL 904



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 3/205 (1%)

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
            YN LL  M R +    ++ I +EM+  G  P+ NT   ++ ++ ++R   +   V   M
Sbjct: 134 AYNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETM 193

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           ++   + + + Y TL+   +     D    +   M+     +     F+++I + +  G+
Sbjct: 194 RKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEI-GYEVTVHLFTTLICVFAREGR 252

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
           V  A ++ +EM    F  +L +    I C+GK  + D   +  + L   G+ PDD     
Sbjct: 253 VDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTS 312

Query: 487 LLNVMTQTPKEELGKLVECVEKSNS 511
           ++ V+ +   E + + VE  E+ +S
Sbjct: 313 MIGVLCKA--ERVDEAVELFEELDS 335



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 4/134 (2%)

Query: 138 ILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           +L+ +   +    AL  F N   LK     + Y++ +    K R  +KA   + +M  +G
Sbjct: 732 LLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQG 791

Query: 196 VKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           +KP+ +T++T+IS  AR+ N+  +A + FER  S G  PD+  Y++MI+    A     A
Sbjct: 792 LKPNTITYTTMISGLARVGNVL-EAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDA 850

Query: 255 FGLYDRARNEKWRI 268
           + L++  R +  RI
Sbjct: 851 YILFEETRLKGCRI 864


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 161/314 (51%), Gaps = 3/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVK--PDNVTFSTLISCARMNNLPNKAVEWFER 225
           YN+ +K       +D+A  L+D +L++ V   PD VTF TLI     N   NKA   FE 
Sbjct: 371 YNIMIKGLFDSGMVDEAIELWD-LLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEE 429

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
               G   D  +YSSMI+     G +  A  +Y++   +  + + + ++ LI  +     
Sbjct: 430 ARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYR 489

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               + +Y +M   G  P +ITYN L+D + +A++  +  ++ +EM +NG +P+  TY S
Sbjct: 490 TSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGS 549

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+R     +  +D LS+++++  KG+++ V ++N L+      G  DEA  +F DMK  +
Sbjct: 550 LIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKK 609

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           NC P+  T+++++      G + +A  ++  + E G EP++    + I+      R  + 
Sbjct: 610 NCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEG 669

Query: 466 VRALNRLPELGITP 479
           ++ L+ +   GI P
Sbjct: 670 IQLLDEVLSRGIIP 683



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 156/328 (47%), Gaps = 2/328 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ ++      DLD+A  LFD +  R V PD +T+STL+      +  + A++  + MP
Sbjct: 161 YNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMP 220

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR-ARNEKWRIDPNAFSTLIKLYGTAGNF 286
             G  PD + Y++++    +AG  E    ++D+  ++   R +   ++ ++      G F
Sbjct: 221 RSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRF 280

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                V+E M A  ++P++ITY  L+  + R+        +Y E+   GL  +   Y SL
Sbjct: 281 KEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSL 340

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           ++ + +A   ++    +      G++ ++  YN ++    D G  DEA E+++ ++    
Sbjct: 341 VKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVA 399

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
           C PD+ TF ++I      G  ++A  +F E   +G + ++F  +S+I       R  D V
Sbjct: 400 CIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAV 459

Query: 467 RALNRLPELGITPDDRFCGCLLNVMTQT 494
           +   ++ + G  P+      L++   Q 
Sbjct: 460 KVYEKMDKDGCKPNSHIYNALISGFCQV 487



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 128/256 (50%), Gaps = 7/256 (2%)

Query: 215 LPNKAVEWFERMPS-FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW--RIDPN 271
           +P+ A++ F  +PS  GC+P   ++++++DA+ RA     A   +    +  +  RI PN
Sbjct: 98  MPDAALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPN 157

Query: 272 --AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
              ++ +++     G+ D  + +++ ++   V P+ ITY+ L+  + +  R      +  
Sbjct: 158 LQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLD 217

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLLAMCADV 388
           EM  +G+ P+   Y +LL    +A   E  + V+ ++ K+ G + ++  YN +L      
Sbjct: 218 EMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKF 277

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G   E  E++E M ++ N QPD  T+  +I      G V  A  +++E+++ G   +  +
Sbjct: 278 GRFKEVGEVWERMVAN-NLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAM 336

Query: 449 LTSLIQCYGKAQRTDD 464
             SL++ + +A R  +
Sbjct: 337 YNSLVKGFCQAGRVQE 352



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 98/217 (45%), Gaps = 1/217 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +YN  +  F +      A R++  M D G  P  +T++TLI          +A      M
Sbjct: 476 IYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREM 535

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G  PD  TY S+I        ++ A  ++ +   +  ++D    + LI    +AG  
Sbjct: 536 VENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKV 595

Query: 287 DGCLNVYEEMK-AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           D  L+V+ +MK      PN++TYN L+D +       +  T++  +T++GL P+  +Y +
Sbjct: 596 DEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNT 655

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
            ++         + + +  E+  +G+  +V  +N L+
Sbjct: 656 RIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILV 692



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 88/197 (44%), Gaps = 5/197 (2%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  VI YN  +    K     +A  +  +M++ G  PD  T+ +LI     +   + A+ 
Sbjct: 506 SPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALS 565

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKL 279
            ++++   G   D + ++ +I     AG V+ A  ++   + EK    PN   ++TL+  
Sbjct: 566 IWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMK-EKKNCPPNLVTYNTLMDG 624

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
               G  D    ++  +   G++P++I+YN  +  +    R  +   +  E+   G+ P 
Sbjct: 625 LYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPT 684

Query: 340 WNTYASLLRAYGRARYG 356
             T+  L+RA    +YG
Sbjct: 685 VITWNILVRAV--IKYG 699


>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 115/504 (22%), Positives = 231/504 (45%), Gaps = 43/504 (8%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  +    +    D+AE +F  M + G+ PD  T+S L+      N   K  E  
Sbjct: 9   DIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELL 68

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M S G  PD  +Y+ +++A+ ++G+++ A G++ + +      +   +S L+ LYG  
Sbjct: 69  KEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRH 128

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G +D   +++ EMK    +PN  TYN L++  G      +V T++ +M +  + PN  TY
Sbjct: 129 GRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETY 188

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             L+ A G+    ED   +   M EKG+  S   Y  ++         +EA   F  M  
Sbjct: 189 EGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNE 248

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               +P   T++S+I + +  G   E+EA+  +M ++G   N      +I+ + +  + +
Sbjct: 249 V-GSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFE 307

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNV-----MTQTPKEELGKLVECVEKSNSKLGYVVK 518
           + ++A   + +    PD++    +L+V     + +  +E+ G+ ++ +    S + Y + 
Sbjct: 308 EAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGE-IKALGILPSVMCYCMM 366

Query: 519 L--------------LLEE--------------QDIEGDFKKEAT-ELFNSISKDVKKAY 549
           L              LL+E              Q I GD+  ++  ++   + + +K   
Sbjct: 367 LAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQMIRGDYDDDSNWQMVEYVFEKLKSEG 426

Query: 550 C-------NCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAA 602
           C       N L++    L   E A ++L       ++ ++  ++   WS+ +  +  GAA
Sbjct: 427 CSLGVRFYNTLLEALWWLGQKERATRVLNEATKRGLFPELFRKNKLVWSVDVHRMWEGAA 486

Query: 603 LTALHIWINDLSKALESGEEFPPL 626
            TA+ +W+N++ +   SG++ P L
Sbjct: 487 CTAISVWLNNMHEMFISGDDLPQL 510



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 1/221 (0%)

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
           R+E  + D   ++TL+      G  D    V+  M   G+ P++ TY+ L++T G+  R 
Sbjct: 2   RHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRL 61

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
            +V  + KEM   G  P+  +Y  LL A+ ++   ++ + V+R+M+  G   +   Y+ L
Sbjct: 62  EKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSIL 121

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           L +    G  D+  ++F +MK S N +P++ T++ +I +    G   E   +F++M+E  
Sbjct: 122 LNLYGRHGRYDDVRDLFLEMKVS-NTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEEN 180

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
            EPN+     LI   GK    +D  + L  + E G+ P  +
Sbjct: 181 VEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSK 221



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 1/185 (0%)

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M+  G++ +++TYN LL    R     + + +++ M + G+ P+  TY+ L+  +G+   
Sbjct: 1   MRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNR 60

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            E    + +EM+  G    +T YN LL   A  G   EA  +F  M+ +  C P++ T+S
Sbjct: 61  LEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGA-GCVPNAATYS 119

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
            ++ +    G+  +   +F EM  +  EPN      LI  +G+     +VV   + + E 
Sbjct: 120 ILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEE 179

Query: 476 GITPD 480
            + P+
Sbjct: 180 NVEPN 184



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 106/284 (37%), Gaps = 56/284 (19%)

Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD 180
            V+   G   L ++ ++  N M              N++ +   V  YN  +++F K   
Sbjct: 225 GVIEAYGQAALYEEALVAFNTM--------------NEVGSKPTVETYNSLIQMFAKGGL 270

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
             ++E +   M   GV  +  TF+ +I   R      +A++ +  M    CDPD  T  +
Sbjct: 271 YKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEA 330

Query: 241 MIDAYGRAGNVEMA---FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           ++  Y  AG VE +   FG                                      E+K
Sbjct: 331 VLSVYCFAGLVEESEEQFG--------------------------------------EIK 352

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYG 356
           A+G+ P+++ Y  +L    +A R      +  EM  N +S        ++R  Y      
Sbjct: 353 ALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQMIRGDYDDDSNW 412

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
           +    V+ ++K +G  L V  YNTLL     +G  + A  +  +
Sbjct: 413 QMVEYVFEKLKSEGCSLGVRFYNTLLEALWWLGQKERATRVLNE 456



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           E  Q D  T++++++ C+ RG   EAE +F  M E G  P++   + L++ +GK  R + 
Sbjct: 4   EGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEK 63

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTP--KEELG 500
           V   L  +   G  PD      LL    Q+   KE +G
Sbjct: 64  VSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMG 101


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 161/314 (51%), Gaps = 3/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVK--PDNVTFSTLISCARMNNLPNKAVEWFER 225
           YN+ +K       +D+A  L+D +L++ V   PD VTF TLI     N   NKA   FE 
Sbjct: 371 YNIMIKGLFDSGMVDEAIELWD-LLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEE 429

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
               G   D  +YSSMI+     G +  A  +Y++   +  + + + ++ LI  +     
Sbjct: 430 ARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYR 489

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               + +Y +M   G  P +ITYN L+D + +A++  +  ++ +EM +NG +P+  TY S
Sbjct: 490 TSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGS 549

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+R     +  +D LS+++++  KG+++ V ++N L+      G  DEA  +F DMK  +
Sbjct: 550 LIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKK 609

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           NC P+  T+++++      G + +A  ++  + E G EP++    + I+      R  + 
Sbjct: 610 NCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEG 669

Query: 466 VRALNRLPELGITP 479
           ++ L+ +   GI P
Sbjct: 670 IQLLDEVLSRGIIP 683



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 155/328 (47%), Gaps = 2/328 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ ++      DLD+A  LFD +  R V PD +T+STL+      +  + A++  + MP
Sbjct: 161 YNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMP 220

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR-ARNEKWRIDPNAFSTLIKLYGTAGNF 286
                PD + Y++++    +AG  E    ++D+  ++   R +   ++ ++      G F
Sbjct: 221 RSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRF 280

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                V+E M A  ++P++ITY  L+  + R+        +Y E+   GL  +   Y SL
Sbjct: 281 KEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSL 340

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           ++ + +A   ++    +      G++ ++  YN ++    D G  DEA E+++ ++    
Sbjct: 341 VKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVA 399

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
           C PD+ TF ++I      G  ++A  +F E   +G + ++F  +S+I       R  D V
Sbjct: 400 CIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAV 459

Query: 467 RALNRLPELGITPDDRFCGCLLNVMTQT 494
           +   ++ + G  P+      L++   Q 
Sbjct: 460 KVYEKMDKDGCKPNSHIYNALISGFCQV 487



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 98/217 (45%), Gaps = 1/217 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +YN  +  F +      A R++  M D G  P  +T++TLI          +A      M
Sbjct: 476 IYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREM 535

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G  PD  TY S+I        ++ A  ++ +   +  ++D    + LI    +AG  
Sbjct: 536 VENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKV 595

Query: 287 DGCLNVYEEMK-AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           D  L+V+ +MK      PN++TYN L+D +       +  T++  +T++GL P+  +Y +
Sbjct: 596 DEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNT 655

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
            ++         + + +  E+  +G+  +V  +N L+
Sbjct: 656 RIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILV 692



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 88/197 (44%), Gaps = 5/197 (2%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  VI YN  +    K     +A  +  +M++ G  PD  T+ +LI     +   + A+ 
Sbjct: 506 SPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALS 565

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKL 279
            ++++   G   D + ++ +I     AG V+ A  ++   + EK    PN   ++TL+  
Sbjct: 566 IWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMK-EKKNCPPNLVTYNTLMDG 624

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
               G  D    ++  +   G++P++I+YN  +  +    R  +   +  E+   G+ P 
Sbjct: 625 LYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPT 684

Query: 340 WNTYASLLRAYGRARYG 356
             T+  L+RA    +YG
Sbjct: 685 VITWNILVRAV--IKYG 699


>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 860

 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 113/496 (22%), Positives = 222/496 (44%), Gaps = 16/496 (3%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G K D  T++T++             +  + M   GC P+ +TY+ +I +YGRA  +  A
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             ++++ +    + D   + TLI ++  AG  D  +++Y+ M+A G+ P+  TY+ +++ 
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +G+A        ++ EM D G +PN  TY  ++  + +AR  +  L +YR+M+  G +  
Sbjct: 479 LGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPD 538

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
              Y+ ++ +    GY +EA  +F +M+  +N  PD   +  ++ +    G V +A   +
Sbjct: 539 KVTYSIVMEVLGHCGYLEEAEAVFTEMQQ-KNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ- 493
             ML AG  PN+    SL+  + +  +  +    L  +  LG+ P  +    LL+  T  
Sbjct: 598 QAMLHAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDG 657

Query: 494 TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----DFKKEAT---ELFNSISKDVK 546
             K ++G   + +  +    G+   + L +    G    + +  A    +L +S  ++ K
Sbjct: 658 RSKLDMGYCGQLMAST----GHPAHMFLLKMPAAGPNGENVRNHANNFLDLMHSEDRESK 713

Query: 547 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTA 605
           +   + ++D        E A  + E+     V+ D ++ +S + W ++L  +S G A+TA
Sbjct: 714 RGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTA 773

Query: 606 LHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELNAPFHDSPD 663
           L   +    + +      P  + I TG G+         +    E  L    +PF     
Sbjct: 774 LSRTLAWFRRQMLVSGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFFTESG 833

Query: 664 KVGWFLTTEAAAKSWL 679
             G F+    +   WL
Sbjct: 834 NSGCFVGCGESLNKWL 849



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 131/257 (50%), Gaps = 1/257 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  +  + +   L++A  +F+ M + G KPD VT+ TLI         + A++ ++R
Sbjct: 400 VTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQR 459

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M + G  PD  TYS +I+  G+AG++  A  L+    ++    +   ++ ++ L+  A N
Sbjct: 460 MQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARN 519

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           +   L +Y +M+  G +P+ +TY+ +++ +G      + + ++ EM      P+   Y  
Sbjct: 520 YQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGL 579

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  +G+A   E     Y+ M   G+  +V   N+LL+    V    EA+E+ ++M +  
Sbjct: 580 LVDLWGKAGNVEKAWQWYQAMLHAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNMLAL- 638

Query: 406 NCQPDSWTFSSMITICS 422
             +P   T++ +++ C+
Sbjct: 639 GLRPSLQTYTLLLSCCT 655



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 151/329 (45%), Gaps = 11/329 (3%)

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
           +N   RID    + ++K     GN  G    Y   +  G K +  TY  ++  +GRAK+ 
Sbjct: 323 QNLGLRIDAYQANQVLKQMNDYGNALGFF--YWLKRQPGFKHDGHTYTTMVGNLGRAKQF 380

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
             +  +  EM  +G  PN  TY  L+ +YGRA Y  + ++V+ +M+E G +     Y TL
Sbjct: 381 GAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTL 440

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           + + A  G+ D A ++++ M++     PD++T+S +I      G +  A  +F EM++ G
Sbjct: 441 IDIHAKAGFLDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 499

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
             PNL     ++  + KA+     ++    +   G  PD      ++ V+      E  +
Sbjct: 500 CTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAE 559

Query: 502 LV--ECVEKS----NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID 555
            V  E  +K+        G +V L  +  ++E  ++     L   +  +V    CN L+ 
Sbjct: 560 AVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLLPNVPT--CNSLLS 617

Query: 556 LCVNLNLLENACKLLELGLTLEVYTDIQS 584
             + +N +  A +LL+  L L +   +Q+
Sbjct: 618 TFLRVNKIAEAYELLQNMLALGLRPSLQT 646



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 8/226 (3%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFE 224
           + Y   + +  K   LD A  ++  M   G+ PD  T+S +I+C  +  +LP  A + F 
Sbjct: 435 VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLP-AAHKLFC 493

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   GC P+ +TY+ M+D + +A N + A  LY   +N  +  D   +S ++++ G  G
Sbjct: 494 EMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCG 553

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA---KRPWQVKTIYKEMTDNGLSPNWN 341
             +    V+ EM+     P+   Y  L+D  G+A   ++ WQ    Y+ M   GL PN  
Sbjct: 554 YLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQ---WYQAMLHAGLLPNVP 610

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           T  SLL  + R     +   + + M   G++ S+  Y  LL+ C D
Sbjct: 611 TCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTD 656



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 92/186 (49%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +   Y+V +    K   L  A +LF +M+D+G  P+ VT++ ++           A++
Sbjct: 466 SPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALK 525

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            +  M + G +PD +TYS +++  G  G +E A  ++   + + W  D   +  L+ L+G
Sbjct: 526 LYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWG 585

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AGN +     Y+ M   G+ PN+ T N+LL T  R  +  +   + + M   GL P+  
Sbjct: 586 KAGNVEKAWQWYQAMLHAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQ 645

Query: 342 TYASLL 347
           TY  LL
Sbjct: 646 TYTLLL 651


>gi|168062855|ref|XP_001783392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665090|gb|EDQ51786.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 540

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 185/377 (49%), Gaps = 2/377 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +   RK  ++DK      +M + G+KPD V +S LI           A   F  + 
Sbjct: 132 YCAVLSACRKVGNIDKGNETLKEMREAGIKPDQVAYSILIDMFGKAGRHEDAAATFRELQ 191

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD++ Y+++I A+ + G V+ A  ++  A+      DP  F T+I++Y  A   D
Sbjct: 192 MSGYLPDSVAYNTLIHAFAKVGMVDQATLVFKEAQRSFCLDDPVIFYTMIQVYAKARMAD 251

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V + MK IG++PN + Y ++L+   RA +P     +++EM ++      +TY ++L
Sbjct: 252 QALHVLKLMKEIGLQPNELGYGSVLNAFMRANQPMGAIKLFEEMQESNCRFGESTYITML 311

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             Y +A +      +  +M++ G + +V  Y+TL+ M   VG   EA  +F  MK  + C
Sbjct: 312 NVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVGKLQEATRLFSTMK-QQGC 370

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           + +   +++M+ +    G++++AE +  E+ ++   P+    T+LI  Y +  R ++ +R
Sbjct: 371 KGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRFEECIR 430

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDI 526
              +    G+  D      ++NV  +  +  +L +L+E + KS  +    +   + E   
Sbjct: 431 VFEQHRADGLKLDRILVAIMINVYGKARQYSKLAELLEVMPKSGIQPDTRILKTVVEIYE 490

Query: 527 EGDFKKEATELFNSISK 543
           +G   + A EL   I++
Sbjct: 491 DGGMCENAAELLRKINE 507



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 133/276 (48%), Gaps = 1/276 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           +++   ++V+ K R  D+A  +   M + G++P+ + + ++++     N P  A++ FE 
Sbjct: 235 VIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSVLNAFMRANQPMGAIKLFEE 294

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M    C     TY +M++ Y +AG    A  L  + R   +R +  A+STLI +YG  G 
Sbjct: 295 MQESNCRFGESTYITMLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVGK 354

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 ++  MK  G K N+I YN +LD  G+A R    + +  E+ D+ L P+  TY +
Sbjct: 355 LQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTT 414

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ AY R    E+ + V+ + +  G++L   L   ++ +        +  E+ E M  S 
Sbjct: 415 LINAYNRLGRFEECIRVFEQHRADGLKLDRILVAIMINVYGKARQYSKLAELLEVMPKS- 473

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
             QPD+    +++ I    G    A  +  ++ E G
Sbjct: 474 GIQPDTRILKTVVEIYEDGGMCENAAELLRKINELG 509



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 139/311 (44%), Gaps = 1/311 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  +  F K   +D+A  +F +        D V F T+I       + ++A+   + 
Sbjct: 200 VAYNTLIHAFAKVGMVDQATLVFKEAQRSFCLDDPVIFYTMIQVYAKARMADQALHVLKL 259

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P+ L Y S+++A+ RA     A  L++  +    R   + + T++ +Y  AG 
Sbjct: 260 MKEIGLQPNELGYGSVLNAFMRANQPMGAIKLFEEMQESNCRFGESTYITMLNVYSKAGF 319

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 +  +M+ +G + N++ Y+ L+D  G+  +  +   ++  M   G   N   Y +
Sbjct: 320 HSAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNT 379

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +L  YG+A    D   +  E+K+  +      Y TL+     +G  +E   +FE  + ++
Sbjct: 380 MLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRFEECIRVFEQHR-AD 438

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             + D    + MI +     + S+   +   M ++G +P+  +L ++++ Y      ++ 
Sbjct: 439 GLKLDRILVAIMINVYGKARQYSKLAELLEVMPKSGIQPDTRILKTVVEIYEDGGMCENA 498

Query: 466 VRALNRLPELG 476
              L ++ ELG
Sbjct: 499 AELLRKINELG 509



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 3/135 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I+YN  + ++ K   ++ AERL  ++ D  + PD VT++TLI+         + +  FE
Sbjct: 374 LIVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRFEECIRVFE 433

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +  + G   D +  + MI+ YG+A        L +       + D     T++++Y   G
Sbjct: 434 QHRADGLKLDRILVAIMINVYGKARQYSKLAELLEVMPKSGIQPDTRILKTVVEIYEDGG 493

Query: 285 NFDGCLNVYEEMKAI 299
               C N  E ++ I
Sbjct: 494 M---CENAAELLRKI 505



 Score = 43.1 bits (100), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A EI  D    +NC PD   ++ +I      G+   A+  F++M   G  P++ +   LI
Sbjct: 42  ALEILVDEMIGKNCPPDIKFYALVIKEAINTGRFQTAQHWFSKMKLLGCPPDIVIYNILI 101

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCL 487
             YGK       ++  ++L + G+ PD   +C  L
Sbjct: 102 LEYGKRGNFSQAMKYFSQLKDEGLLPDSGTYCAVL 136


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 170/332 (51%), Gaps = 1/332 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A AL      +  S +V+ YN  +  + KC +L++ E+L  +M   G +PD VT++ L++
Sbjct: 213 ARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVN 272

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           C        +A  +F  M   G   + +T+S+ +DA+ + G V  A  L+ + R +  + 
Sbjct: 273 CFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKP 332

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           +   ++ L+     AG  D  L +  EM   GV  N++TY  L+D + +  +  + + ++
Sbjct: 333 NEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVF 392

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           + M   G+  N   Y +L+  +   +  E  LS+  EMK+KGM+L V+LY  L+    ++
Sbjct: 393 RLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNL 452

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
              DEA  +   M      +P++  +++++  C    K SEA A+  +M+++GF PN+  
Sbjct: 453 QKLDEAKSLLNKMDEC-GLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVT 511

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             +L+    KA   D+ +   N++ +LG+ P+
Sbjct: 512 YCALVDGLCKAGSIDEAISHFNKMVDLGLEPN 543



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 146/309 (47%), Gaps = 1/309 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           LD A  L ++M+ +GV  + VT++ L+          +A + F  M   G   + L Y++
Sbjct: 350 LDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTT 409

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I  +    N E A  L    +++   +D + +  LI         D   ++  +M   G
Sbjct: 410 LIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECG 469

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           +KPN + Y N++D   +A++  +   + ++M D+G  PN  TY +L+    +A   ++ +
Sbjct: 470 LKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAI 529

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
           S + +M + G++ +V  Y  L+      G  D+A  + ++M   +    D+   +S++  
Sbjct: 530 SHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEM-IDKGMSLDNVVCTSLMDG 588

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              +G + +A A+  +M+ +G + +L+  T  +  +       +    L+ + E GITPD
Sbjct: 589 HLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPD 648

Query: 481 DRFCGCLLN 489
                CL+N
Sbjct: 649 AVVYNCLIN 657



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 148/321 (46%), Gaps = 10/321 (3%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V P+  T + ++ C         A   FE++P+    P+  T++ MID   + G++  A 
Sbjct: 159 VPPNTRTCNHILLCLARERSSELAWRLFEQLPA----PNVFTFNIMIDFLCKEGDLAEAR 214

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L  R +      D   +++LI  YG  G  +    +  EM+  G +P+++TYN L++  
Sbjct: 215 ALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCF 274

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +  R  +  + + EM   G+  N  T+++ + A+ +     + + ++ +M+ KGM+ + 
Sbjct: 275 CKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNE 334

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y  L+      G  D+A  +  +M   +    +  T++ ++      GKV+EAE +F 
Sbjct: 335 VTYTCLVDGTCKAGRLDDALVLTNEM-VQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFR 393

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
            M  AG   N  + T+LI  +   + ++  +  L+ + + G+  D    G L+  +    
Sbjct: 394 LMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQ 453

Query: 496 KEE-----LGKLVECVEKSNS 511
           K +     L K+ EC  K N+
Sbjct: 454 KLDEAKSLLNKMDECGLKPNN 474



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 120/257 (46%), Gaps = 3/257 (1%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           ++A  L  +M D+G++ D   +  LI     +  L ++A     +M   G  P+ + Y++
Sbjct: 421 ERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKL-DEAKSLLNKMDECGLKPNNVIYTN 479

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           ++DA  +A     A  L  +  +  +R +   +  L+     AG+ D  ++ + +M  +G
Sbjct: 480 IMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLG 539

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           ++PN+  Y  L+D + +  R  +   +  EM D G+S +     SL+  + +    +D  
Sbjct: 540 LEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAF 599

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
           ++  +M   G+QL +  Y   +    ++    EA E+  +M  +    PD+  ++ +I  
Sbjct: 600 ALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIEN-GITPDAVVYNCLINK 658

Query: 421 CSCRGKVSEAEAMFNEM 437
           C   G + EA  + NEM
Sbjct: 659 CQKLGNMEEAAILQNEM 675



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 113/244 (46%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V LY   +      + LD+A+ L + M + G+KP+NV ++ ++         ++A+   
Sbjct: 438 DVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALL 497

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           ++M   G  P+ +TY +++D   +AG+++ A   +++  +     +  A++ L+      
Sbjct: 498 QKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKN 557

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D  + + +EM   G+  + +   +L+D   +         +  +M ++GL  +   Y
Sbjct: 558 GRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGY 617

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
              +  +      ++   V  EM E G+     +YN L+  C  +G  +EA  +  +M+S
Sbjct: 618 TCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEMES 677

Query: 404 SENC 407
             +C
Sbjct: 678 LLSC 681



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 101/256 (39%), Gaps = 41/256 (16%)

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR---PWQV-- 324
           P+   TL+ L    G  D  +     ++ + V PN  T N++L  + R +     W++  
Sbjct: 128 PSVVDTLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWRLFE 187

Query: 325 --------------------------KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
                                     + +   M   G SP+  TY SL+  YG+    E+
Sbjct: 188 QLPAPNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEE 247

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
              +  EM+  G +  V  YN L+      G  + A+  F +MK  E    +  TFS+ +
Sbjct: 248 VEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMK-REGVMANVVTFSTFV 306

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 G V EA  +F +M   G +PN    T L+    KA R DD +   N + + G+ 
Sbjct: 307 DAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVP 366

Query: 479 PDDRFCGCLLNVMTQT 494
                    LNV+T T
Sbjct: 367 ---------LNVVTYT 373


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 199/408 (48%), Gaps = 13/408 (3%)

Query: 137 IILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+++++   D    A   F +  KL  S +V  Y + ++       +D   +LF+ M  +
Sbjct: 105 ILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQ 164

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G +P+  T+ +++         ++A + F++M   G  PDA+TY+ +IDA+G+ G +E A
Sbjct: 165 GCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERA 224

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
           F    ++R+    +    +++L+   G  G+  G + ++ +MKA G+  N +TY  L++ 
Sbjct: 225 FDFVGKSRSFTNEV---TYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIER 281

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +G A R   V  +Y EM DN +  +  T  ++L    +A   E    ++++MK KG+   
Sbjct: 282 LGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNAD 341

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
              YN L+      G  D A  +  +M+ +  C P+  T++++I+       +S A  +F
Sbjct: 342 TVTYNILINGLGRAGKLDAAGALLLEMEEN-GCAPNIITYNTLISSYGKWSNLSAATRLF 400

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
            EM E G  PN+   +SLI+ +GKA RTD  +     +   G  P+      L++ + + 
Sbjct: 401 LEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRA 460

Query: 495 PKEELGKLVECVEK---SNSKLGYVVKLLLEEQDIEGDFKKEATELFN 539
            +   G  +E + +   +  ++G V K LL    I   + +EA   F 
Sbjct: 461 GR--FGAAMEYLREMRDAGCQMGKVTKSLLVR--IPPQYMEEAQSFFQ 504



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 149/313 (47%), Gaps = 4/313 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N+ +    K   +++A  +F DM    V PD  T++ LI         +  ++ FE M 
Sbjct: 103 FNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMT 162

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + GC P+  TY S++ A+G AG V+ A  ++ +   +  + D   ++ LI  +G  G  +
Sbjct: 163 AQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLE 222

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              +   + ++     N +TYN+LL ++GR      +  ++ +M   GL  N  TYA L+
Sbjct: 223 RAFDFVGKSRSF---TNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILI 279

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
              G A   ED   +Y EM +  ++  +   N +L   +  G  + AFE+F+DMK  +  
Sbjct: 280 ERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMK-FKGL 338

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
             D+ T++ +I      GK+  A A+  EM E G  PN+    +LI  YGK        R
Sbjct: 339 NADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATR 398

Query: 468 ALNRLPELGITPD 480
               + E G+ P+
Sbjct: 399 LFLEMKERGVAPN 411



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 132/288 (45%), Gaps = 4/288 (1%)

Query: 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
            R  D  +RL + M     K D   F+TLI      N+  KA++        G  P A T
Sbjct: 8   ARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYT 67

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           YSSMI  + + G+V+    +Y +    K+  D   F+ LI     A   +   NV+ +M 
Sbjct: 68  YSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMF 127

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
            + V P++ TY  L+ ++G   R   V  +++ MT  G  PN  TY S++ A+G A   +
Sbjct: 128 KLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVD 187

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           +   ++++M +KG+Q     YN L+      G  + AF+     +S  N      T++S+
Sbjct: 188 EACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSFTN----EVTYNSL 243

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           ++    +G +     +F +M   G   N      LI+  G A R +DV
Sbjct: 244 LSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDV 291



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 108/216 (50%), Gaps = 4/216 (1%)

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
           +L+ +M+D  +K D VT + ++ C         A E F+ M   G + D +TY+ +I+  
Sbjct: 293 QLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGL 352

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
           GRAG ++ A  L           +   ++TLI  YG   N      ++ EMK  GV PN+
Sbjct: 353 GRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNV 412

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA-RYGEDTLSVYR 364
           ++Y++L++  G+A R     ++++EM   G  PN  TY  L+    RA R+G   +   R
Sbjct: 413 VSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGA-AMEYLR 471

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
           EM++ G Q+     + L+ +     Y +EA   F++
Sbjct: 472 EMRDAGCQMGKVTKSLLVRIPPQ--YMEEAQSFFQE 505



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 113/255 (44%), Gaps = 44/255 (17%)

Query: 117 DDVFSVLRCLGDDFLEQDCVII---LNNMTNPDTAALALTYFTN-KLKA-SKEVILYNVT 171
           +DV+ +   + D+ ++ D V I   L+ ++       A   F + K K  + + + YN+ 
Sbjct: 289 EDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNIL 348

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFG 230
           +    +   LD A  L  +M + G  P+ +T++TLIS   + +NL + A   F  M   G
Sbjct: 349 INGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNL-SAATRLFLEMKERG 407

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
             P+ ++YSS+I+ +G+AG                                     D  +
Sbjct: 408 VAPNVVSYSSLIEGFGKAGRT-----------------------------------DAAI 432

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
           +++ EMKA G  PN +TYN L+D + RA R        +EM D G      T + L+R  
Sbjct: 433 SLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAGCQMGKVTKSLLVRI- 491

Query: 351 GRARYGEDTLSVYRE 365
              +Y E+  S ++E
Sbjct: 492 -PPQYMEEAQSFFQE 505



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 1/135 (0%)

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +L   G AR  +D   +   M++   +L   L+NTL+ +  +    ++A +      + E
Sbjct: 1   MLTLLGAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAF-TKE 59

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +P ++T+SSMI +    G V     M+ +ML+A F P+      LI    KA + ++ 
Sbjct: 60  GGRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEA 119

Query: 466 VRALNRLPELGITPD 480
                 + +L ++PD
Sbjct: 120 CNVFGDMFKLNVSPD 134


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 127/482 (26%), Positives = 208/482 (43%), Gaps = 62/482 (12%)

Query: 52  QSSNPTKHSQNPQ--------YPHGKTGSSPKSYIWVNPK-SPRASKLKEKSYDTRYN-- 100
           Q+  P   + NPQ           GK+  + +   W + + SP   ++ +   D  +N  
Sbjct: 43  QNFQPHTQTPNPQSPIIPRRRRRIGKSQDANRGKPWSHGRLSPPGQRILQTLIDPTFNLA 102

Query: 101 SLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNM---TNPDTAALALTYFTN 157
            + +L  +L      E D FSV      + L  D + I+  +      DTA     +  N
Sbjct: 103 QIDELLLELFEQQPGESD-FSV------ESLSLDVLGIVKGLGFYKKCDTALRVFEWVRN 155

Query: 158 KLKASKEVI---LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
           + K S+ ++   +  V + +  K   +  A  L  ++   G   D   ++++I+    N 
Sbjct: 156 R-KESELLLNGSIIAVIISILGKGGRVSAAASLLHNLCKDGFDVDVYAYTSMITAFTSNG 214

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAF 273
              +AV  F++M   GC P  +TY+ +++ YG+ G       GL DR ++     D   +
Sbjct: 215 RYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTY 274

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           +TLI        ++    V +EMK  G  P+ +TYN LLD  G+++R  +   + +EM  
Sbjct: 275 NTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEG 334

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
           NG  P+  TY SL+ AY R    ED L +  +M EKG++  V  Y TLL+     G    
Sbjct: 335 NGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKA 394

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV-------------------------- 427
           A +IFE+M+ +E C+P+  TF+++I +   RGK                           
Sbjct: 395 AVQIFEEMR-NEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLL 453

Query: 428 ---------SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                    SE   +F EM  AGF P      +LI  Y +    D  +    R+ E G+ 
Sbjct: 454 SVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVN 513

Query: 479 PD 480
           PD
Sbjct: 514 PD 515



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 160/319 (50%), Gaps = 1/319 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + + YN  + V+ K R   +A  +  +M   G  P  VT+++LIS    + L   A+E
Sbjct: 303 SPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALE 362

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
              +M   G  PD  TY++++  + +AG  + A  +++  RNE  + +   F+ LIK++G
Sbjct: 363 LKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHG 422

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G F   + V+E++K     P+++T+N LL   G+     +V  ++KEM   G  P  +
Sbjct: 423 NRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERD 482

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+ +L+ +Y R    +  ++VY+ M E G+   ++ YN +LA  A  G   ++ ++  +M
Sbjct: 483 TFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEM 542

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K    C+P+  T+ S++   +   ++    A+  E+     EP   +L +L+    K   
Sbjct: 543 KDGR-CKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDL 601

Query: 462 TDDVVRALNRLPELGITPD 480
             +  RA   L + G +PD
Sbjct: 602 LMETERAFLELRQRGFSPD 620



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 138/310 (44%), Gaps = 5/310 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N  +  + +C   D+A  ++  ML+ GV PD  +++ +++      L  ++ +    M 
Sbjct: 484 FNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMK 543

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGN 285
              C P+ LTY S++ AY     +E    L +   +    I+P A    TL+ +      
Sbjct: 544 DGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGI--IEPRAVLLKTLVLVNSKCDL 601

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                  + E++  G  P++ T N ++   GR +   +   I   M   G +P+  TY S
Sbjct: 602 LMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNS 661

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  Y R+   E +  + RE+  KG++  +  YNT++      G   +A  +  +M+ S 
Sbjct: 662 LMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRES- 720

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              PD  T+++ I   +      EA  +   M++ G +PN     S++  Y K  R D+ 
Sbjct: 721 GPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEA 780

Query: 466 VRALNRLPEL 475
              +N L +L
Sbjct: 781 SMFVNNLRKL 790



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 141/316 (44%), Gaps = 1/316 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +  +N  +K+        +  ++F+D+      PD VT++TL+S    N + ++    F+
Sbjct: 411 ICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFK 470

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  P+  T++++I +Y R G+ + A  +Y R        D ++++ ++      G
Sbjct: 471 EMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGG 530

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            +     V  EMK    KPN +TY +LL      K   ++  + +E+    + P      
Sbjct: 531 LWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLK 590

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+    +     +T   + E++++G    +T  N ++++        +A EI + MK  
Sbjct: 591 TLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRG 650

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               P   T++S++ + S       +E +  E+L  G  P++    ++I  Y +  R  D
Sbjct: 651 -GFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRD 709

Query: 465 VVRALNRLPELGITPD 480
             R L+ + E G  PD
Sbjct: 710 ASRVLSEMRESGPAPD 725



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 104/229 (45%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   +  +   +++++   L +++    ++P  V   TL+      +L  +    F  
Sbjct: 552 LTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLE 611

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +   G  PD  T ++M+  YGR   V  A  + D  +   +      +++L+ +Y  + N
Sbjct: 612 LRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSAN 671

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F+    +  E+ A G++P++I+YN ++    R  R      +  EM ++G +P+  TY +
Sbjct: 672 FERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNT 731

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
            + +Y       + + V   M + G + + + YN+++     +   DEA
Sbjct: 732 FIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEA 780


>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
 gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
 gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
 gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
 gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
          Length = 862

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 175/353 (49%), Gaps = 12/353 (3%)

Query: 134 DCVIILNNMTN-PDTAALA--LTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDD 190
           D   ++N +++ P   ++A  L  F NKL  +     + +  K F    D  ++ RLF  
Sbjct: 75  DVESLINKLSSLPPRGSIARCLDIFKNKLSLND----FALVFKEFAGRGDWQRSLRLFKY 130

Query: 191 MLDRGV--KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
           M  R +  KP+   ++ +IS      L +K +E F+ MPS G      +Y+++I+AYGR 
Sbjct: 131 M-QRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRN 189

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNMIT 307
           G  E +  L DR +NEK       ++T+I      G +++G L ++ EM+  G++P+++T
Sbjct: 190 GRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVT 249

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           YN LL          + + +++ M D G+ P+  TY+ L+  +G+ R  E    +  EM 
Sbjct: 250 YNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMA 309

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
             G    +T YN LL   A  G   EA  +F  M+++  C P++ T+S ++ +    G+ 
Sbjct: 310 SGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA-GCTPNANTYSVLLNLFGQSGRY 368

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +   +F EM  +  +P+      LI+ +G+     +VV   + + E  I PD
Sbjct: 369 DDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPD 421



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 120/519 (23%), Positives = 226/519 (43%), Gaps = 56/519 (10%)

Query: 164 EVILYNVTMKVFRKCRDL-DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
           +++ YN  +      R L D+AE +F  M D G+ PD  T+S L+          K  + 
Sbjct: 246 DIVTYNTLLSAC-AIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDL 304

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
              M S G  PD  +Y+ +++AY ++G+++ A G++ + +      + N +S L+ L+G 
Sbjct: 305 LGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQ 364

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           +G +D    ++ EMK+    P+  TYN L++  G      +V T++ +M +  + P+  T
Sbjct: 365 SGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMET 424

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y  ++ A G+    ED   + + M    +  S   Y  ++         +EA   F  M 
Sbjct: 425 YEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMH 484

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
                 P   TF S++   +  G V E+EA+ + ++++G   N     + I+ Y +  + 
Sbjct: 485 EV-GSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKF 543

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV-ECVEKSN---------SK 512
           ++ V+    + +    PD+R    +L+V +        +LV EC E+           S 
Sbjct: 544 EEAVKTYVDMEKSRCDPDERTLEAVLSVYS------FARLVDECREQFEEMKASDILPSI 597

Query: 513 LGYVVKL--------------LLEE--------------QDIEGDFKKEAT--------E 536
           + Y + L              LLEE              Q I+GD+  ++         +
Sbjct: 598 MCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLD 657

Query: 537 LFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKS 596
             NS    +   + N L+D    L   E A ++L       ++ ++  ++   WS+ +  
Sbjct: 658 KLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFPELFRKNKLVWSVDVHR 717

Query: 597 LSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGK 635
           +S G   TAL +W+ND++  L  G + P L  + +  G+
Sbjct: 718 MSEGGMYTALSVWLNDINDMLLKG-DLPQLAVVVSVRGQ 755



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 157/324 (48%), Gaps = 3/324 (0%)

Query: 160 KASKEVILYNVTMKV-FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           K S  ++ YN  +    R   D +    LF +M   G++PD VT++TL+S   +  L ++
Sbjct: 206 KISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDE 265

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A   F  M   G  PD  TYS +++ +G+   +E    L     +     D  +++ L++
Sbjct: 266 AEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLE 325

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            Y  +G+    + V+ +M+A G  PN  TY+ LL+  G++ R   V+ ++ EM  +   P
Sbjct: 326 AYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDP 385

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  TY  L+  +G   Y ++ ++++ +M E+ ++  +  Y  ++  C   G  ++A +I 
Sbjct: 386 DAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKIL 445

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           + M ++ +  P S  ++ +I          EA   FN M E G  P++    SL+  + +
Sbjct: 446 QYM-TANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFAR 504

Query: 459 AQRTDDVVRALNRLPELGITPDDR 482
                +    L+RL + GI P +R
Sbjct: 505 GGLVKESEAILSRLVDSGI-PRNR 527



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 115/283 (40%), Gaps = 19/283 (6%)

Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD 180
            ++   G   L +D   IL  MT  D    +  Y T  ++A  +  LY            
Sbjct: 427 GIIFACGKGGLHEDARKILQYMTANDIVPSSKAY-TGVIEAFGQAALY------------ 473

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
            ++A   F+ M + G  P   TF +L+       L  ++     R+   G   +  T+++
Sbjct: 474 -EEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNA 532

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKA 298
            I+AY + G  E A   Y     EK R DP+      ++ +Y  A   D C   +EEMKA
Sbjct: 533 QIEAYKQGGKFEEAVKTY--VDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKA 590

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGE 357
             + P+++ Y  +L   G+ +R   V  + +EM  N +S        +++  Y      +
Sbjct: 591 SDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQ 650

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
               V  ++  +G  L +  YN LL     +G  + A  +  +
Sbjct: 651 IVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNE 693


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 184/380 (48%), Gaps = 10/380 (2%)

Query: 126 LGDDFLEQDCV-------IILNNMTNPDTAALALTYFTNKLKASKEVIL--YNVTMKVFR 176
           L D+ + + CV       +++N +   D    AL  F    +   E +L  Y   +    
Sbjct: 620 LFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLV 679

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K   +D A ++F+++ +  + PD   ++ +++    +N  ++A +  + M +    PD  
Sbjct: 680 KDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLF 739

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           TY+S++D  G++G +E AF ++ +   E    D  A+++L+ + G  G     L ++  M
Sbjct: 740 TYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAM 799

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
                 P+++TY++L+D++G+  R  +    ++     G +PN   Y+SL+ ++G+    
Sbjct: 800 AKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMV 859

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           +  L ++ EM+ +    ++  YN LL+  A  G  + A ++ E+M+    C PD  T++ 
Sbjct: 860 DRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKV-GCVPDLVTYNI 918

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I      G V EAE+ F  M E G  P++   TSLI+  GK  +  +     + + E G
Sbjct: 919 LIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEG 978

Query: 477 ITPDDRFCGCLLNVMTQTPK 496
             P       L++++ +  K
Sbjct: 979 YNPSVVTYNVLIDILGRAGK 998



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/444 (23%), Positives = 206/444 (46%), Gaps = 46/444 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           + + +  F +   LD A     +M+  G+ P   TF+ LI     +   ++A ++F  M 
Sbjct: 290 FRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMK 349

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           +  C P+ +TY+++++   +AG +E A  ++   +      D  A++TLI   G AG  D
Sbjct: 350 NLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEAD 409

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +++EMK  G+ PN+ TYN ++  +G+A R  +   ++ ++ + G  P+  TY +L+
Sbjct: 410 MACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLI 469

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQ-------------------------------LSVT 376
              G+    +  L++ +EM EKG +                               L   
Sbjct: 470 DVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEI 529

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            YNTL++     G+ DEA ++ E MK  E C P   T+++++      G++ EA ++  E
Sbjct: 530 TYNTLMSAFIHNGHVDEAVKLLEVMKKHE-CIPTVVTYTTLVDGLGKAGRLDEAVSLLRE 588

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           M + G EP++   +SL+  + K  + ++ +   + +   G   D      ++N + ++  
Sbjct: 589 MEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDD 648

Query: 497 -----EELGKLVECVEKSNSKLGYVVKLLLE-EQDIEGDFKKEATELFNSISKD--VKKA 548
                +  G++ E  E     LG    LL    +D + DF   A ++FN + +   V   
Sbjct: 649 VDQALDVFGRMKE--EGMEPLLGNYKTLLSSLVKDEKIDF---ALQIFNELQESSLVPDT 703

Query: 549 YC-NCLIDLCVNLNLLENACKLLE 571
           +  N +++  V  N ++ ACKL++
Sbjct: 704 FVYNIMVNGLVKSNRVDEACKLVD 727



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 139/269 (51%), Gaps = 1/269 (0%)

Query: 177  KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
            K   L++A  +F  M + G +PD V +++L+         + A+  F  M    C PD +
Sbjct: 750  KSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVV 809

Query: 237  TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            TYSS+ID+ G+ G VE A+  ++ + ++    +   +S+LI  +G  G  D  L ++EEM
Sbjct: 810  TYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEM 869

Query: 297  KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
            +     PN++TYNNLL  + +A R    + + +EM   G  P+  TY  L+   G+    
Sbjct: 870  QRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMV 929

Query: 357  EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            ++  S ++ MKEKG+   V  + +L+     V    EA E+F+ M+  E   P   T++ 
Sbjct: 930  DEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSME-EEGYNPSVVTYNV 988

Query: 417  MITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            +I I    GKV EA  +F+EM   G  P+
Sbjct: 989  LIDILGRAGKVHEAAMIFHEMKVKGCMPD 1017



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 175/378 (46%), Gaps = 5/378 (1%)

Query: 118  DVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEV---ILYNVTMKV 174
            DVF  ++  G + L  +   +L+++   +    AL  F N+L+ S  V    +YN+ +  
Sbjct: 654  DVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIF-NELQESSLVPDTFVYNIMVNG 712

Query: 175  FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
              K   +D+A +L D M ++ + PD  T+++L+     +    +A   F +M   G +PD
Sbjct: 713  LVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPD 772

Query: 235  ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
             + Y+S++D  G+ G +  A  ++     ++   D   +S+LI   G  G  +     +E
Sbjct: 773  VVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFE 832

Query: 295  EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
               + G  PN+  Y++L+D+ G+     +   +++EM      PN  TY +LL    +A 
Sbjct: 833  NSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAG 892

Query: 355  YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
                   +  EM++ G    +  YN L+     +G  DEA   F+ MK  +   PD  TF
Sbjct: 893  RLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKE-KGIVPDVITF 951

Query: 415  SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
            +S+I       K+ EA  +F+ M E G+ P++     LI   G+A +  +     + +  
Sbjct: 952  TSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKV 1011

Query: 475  LGITPDDRFCGCLLNVMT 492
             G  PD    G +  +++
Sbjct: 1012 KGCMPDGITIGIMKRILS 1029



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 134/276 (48%), Gaps = 3/276 (1%)

Query: 151  ALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
            A   FT   +   E  V+ Y   M V  K   L  A  +F  M  +   PD VT+S+LI 
Sbjct: 757  AFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLID 816

Query: 209  CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                     +A  +FE   S GC P+   YSS+ID++G+ G V+ A  L++  +  +   
Sbjct: 817  SLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPP 876

Query: 269  DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
            +   ++ L+     AG  +    + EEM+ +G  P+++TYN L+D +G+     + ++ +
Sbjct: 877  NIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYF 936

Query: 329  KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            K M + G+ P+  T+ SL+ + G+     +   ++  M+E+G   SV  YN L+ +    
Sbjct: 937  KRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRA 996

Query: 389  GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
            G   EA  IF +MK  + C PD  T   M  I S R
Sbjct: 997  GKVHEAAMIFHEMK-VKGCMPDGITIGIMKRILSVR 1031



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 152/327 (46%), Gaps = 4/327 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     K +    V+ Y   +    K   LD+A  L  +M  +G +P  VT+S+L++
Sbjct: 547 AVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMA 606

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                +   +++  F+ M   GC  D  TYS +I+   ++ +V+ A  ++ R + E    
Sbjct: 607 SFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEP 666

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
               + TL+         D  L ++ E++   + P+   YN +++ + ++ R  +   + 
Sbjct: 667 LLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLV 726

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             M +  + P+  TY SLL   G++   E+  +++ +M E+G +  V  Y +L+ +    
Sbjct: 727 DSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKG 786

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G    A  IF  M + + C PD  T+SS+I      G+V EA   F   +  G  PN+ V
Sbjct: 787 GKLSHALIIFRAM-AKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGV 845

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPEL 475
            +SLI  +GK    D   RAL    E+
Sbjct: 846 YSSLIDSFGKKGMVD---RALELFEEM 869



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 156/332 (46%), Gaps = 1/332 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A++L     K      V+ Y+  M  F K    +++  LFD+M+ +G   D  T+S +I+
Sbjct: 582 AVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVIN 641

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           C   ++  ++A++ F RM   G +P    Y +++ +  +   ++ A  +++  +      
Sbjct: 642 CLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVP 701

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   ++ ++     +   D    + + MK   + P++ TY +LLD +G++ R  +   ++
Sbjct: 702 DTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMF 761

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            +MT+ G  P+   Y SL+   G+       L ++R M +K     V  Y++L+      
Sbjct: 762 TKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKE 821

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G  +EA+  FE+   S+ C P+   +SS+I     +G V  A  +F EM      PN+  
Sbjct: 822 GRVEEAYYFFEN-SISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVT 880

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             +L+    KA R +   + L  + ++G  PD
Sbjct: 881 YNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPD 912



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 156/345 (45%), Gaps = 39/345 (11%)

Query: 137 IILNNMTNPDTAALALTYFT---NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           ++ + + N     LA  +FT    +   S  V  Y + +K     ++ D   ++   M  
Sbjct: 151 LVCDVVVNQKDLHLAKCFFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWK 210

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS-------------S 240
            G +      ++L+      N  + A+E F +M SFGC+P    Y+             S
Sbjct: 211 EGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHS 270

Query: 241 MIDAYGRAGNVEM-----AFGLYDRARNEKWRIDPNA-----------------FSTLIK 278
            +  +G+ G   +      F ++  + N   R+DP A                 F+ LI 
Sbjct: 271 AVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLID 330

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
               +GN D     +  MK +   PN++TY  L++ + +A R  +   ++ EM +N  SP
Sbjct: 331 ALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSP 390

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +   Y +L+   G+A   +    +++EMK++G+  ++  YN ++++    G   EA+++F
Sbjct: 391 DAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLF 450

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
            D+K  +   PD +T++++I +    G++ +  A+  EM+E G E
Sbjct: 451 HDLK-EQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGE 494



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 81/192 (42%), Gaps = 1/192 (0%)

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TY  ++  +  A+    V  I   M   G   + +   SLLR +G        L ++ +M
Sbjct: 184 TYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQM 243

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           K  G   S  +YN +L +    G+   A  +F  +      QPD+ TF   +   +  G+
Sbjct: 244 KSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKL-GQFRIQPDAQTFRIFVHSFNRSGR 302

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
           +  A     EM+++G +P +   T LI    K+   D+  +  N +  L  +P+      
Sbjct: 303 LDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTT 362

Query: 487 LLNVMTQTPKEE 498
           L+N + +  + E
Sbjct: 363 LVNGLAKAGRLE 374


>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 856

 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/417 (23%), Positives = 198/417 (47%), Gaps = 9/417 (2%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G K D  T++T+I             +  + M S  C P  +TY+ +I AYGRA  +  A
Sbjct: 358 GFKHDGHTYTTMIGILGQAKQFGTMRKLLDEMSSVNCKPTVVTYNRIIHAYGRANYLREA 417

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             +++      ++ D   + TLI ++  +G  +  +++Y  M+ +G+ P+  TY+ +++ 
Sbjct: 418 VKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNC 477

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +G+  +      ++ EM DNG +PN  TY  ++    +AR  ++ + +YR+M+  G +  
Sbjct: 478 LGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPD 537

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
              Y+ ++ +    G+ DEA  +F +M+   +  PD   +  ++ +    G V +A   +
Sbjct: 538 KITYSIVMEVLGHCGHLDEAEAVFLEMR--RDWAPDEPVYGLLVDLWGKAGNVDKALGWY 595

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           + ML+ G +PN+    SL+  + K  R  D    L  +   G+ P  +    LL+  T  
Sbjct: 596 HAMLQDGLQPNVPTCNSLLSAFLKLNRFQDAYGVLQNMLAQGLVPSLQTYTLLLSCCTDA 655

Query: 495 PKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----DFKKEATELFNSISKDVKKAYC 550
              ++G   + +  +     ++  L L + +  G    D  +   ++ +S  ++ K+   
Sbjct: 656 -HAQMGLCCQLMAITGHP-AHMFLLYLPDAEPGGENVRDHARYFLDMMHSEDRESKRGIM 713

Query: 551 NCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTAL 606
           + +ID      L E A  + E+     VY D ++ +S + W ++L  +S G A+TAL
Sbjct: 714 DAVIDFLHKSGLKEEAGFIWEVAAQRNVYPDSVREKSSSYWLINLHLMSEGTAVTAL 770


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 181/347 (52%), Gaps = 3/347 (0%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A+  +  YN+ + +  K  +L+ A ++ D M + G+ P+ +T + +I         ++A 
Sbjct: 408 AAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEAC 467

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
             F  +    C PD+ T+ S+ID  GR G V+ A+ LY++  +     +   +++LI+ +
Sbjct: 468 SIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNF 527

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G  +    +Y+EM   G  P+++  N+ +D + +A    + + +++E+   GL P+ 
Sbjct: 528 FKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDV 587

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            +Y+ L+    +A +  +T  ++ EMKE+G+ L V  YNT++      G  D+A+++ E+
Sbjct: 588 RSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEE 647

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           MK ++  QP   T+ S++   +   ++ EA  +F E    G + N+ + +SLI  +GK  
Sbjct: 648 MK-TKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVG 706

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
           R D+    L  L + G+TP+     CLL+ + +   EE+ +   C +
Sbjct: 707 RIDEAYLILEELMQKGLTPNSYTWNCLLDALVKA--EEIDEAQVCFQ 751



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 154/317 (48%), Gaps = 3/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V++Y   ++ F KC   +   +++ +M+ RG  PD +  ++ + C        K    FE
Sbjct: 517 VVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFE 576

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            + + G  PD  +YS +I    +AG     + L+   + +   +D  A++T+I  +  +G
Sbjct: 577 EIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSG 636

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D    + EEMK  G++P ++TY +++D + +  R  +   +++E    G+  N   Y+
Sbjct: 637 KVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYS 696

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL+  +G+    ++   +  E+ +KG+  +   +N LL         DEA   F++MK+ 
Sbjct: 697 SLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNL 756

Query: 405 ENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           + C P++ T+S MI  +C  R K ++A   + EM + G +PN    T++I    KA    
Sbjct: 757 K-CSPNAMTYSIMINGLCMIR-KFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVM 814

Query: 464 DVVRALNRLPELGITPD 480
           +     +R    G  PD
Sbjct: 815 EARGLFDRFKASGGVPD 831



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 144/311 (46%), Gaps = 3/311 (0%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F K   L +A  + + M     +P    ++TLI      N P+  +  F +M   G + +
Sbjct: 178 FVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEAN 237

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
              +++++  + R G ++ A  L D  ++  +  D   ++  I  +G  G  D     + 
Sbjct: 238 VHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFH 297

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           EMKA G+ P+ +TY  L+  + +A+R  +   +++E+  N   P    Y +++  YG A 
Sbjct: 298 EMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAG 357

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             ++  S+    K KG   SV  YN +L      G  +EA  I ++M+  ++  P+  T+
Sbjct: 358 KFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMR--QDAAPNLTTY 415

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + +I +    G++  A  + + M EAG  PN+  +  +I    KAQ+ D+       L  
Sbjct: 416 NILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDH 475

Query: 475 LGITPDDR-FC 484
              +PD R FC
Sbjct: 476 KVCSPDSRTFC 486



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 166/358 (46%), Gaps = 1/358 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +++L N  M    K  +++K   LF+++  +G+ PD  ++S LI          +  +
Sbjct: 549 SPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYK 608

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F  M   G   D L Y+++ID + ++G V+ A+ L +  + +  +     + +++    
Sbjct: 609 LFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLA 668

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                D    ++EE K+IGV  N++ Y++L+D  G+  R  +   I +E+   GL+PN  
Sbjct: 669 KIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSY 728

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+  LL A  +A   ++    ++ MK      +   Y+ ++     +   ++AF  +++M
Sbjct: 729 TWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEM 788

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           +  +  +P++ T+++MI   +  G V EA  +F+    +G  P+     ++I+    A +
Sbjct: 789 Q-KQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANK 847

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKL 519
             D           G   + + C  LL+ + +    E   +V  V +  +K  +  +L
Sbjct: 848 AMDAYIVFEETRLKGCRVNSKTCVVLLDALHKADCLEQAAIVGAVLREMAKSQHATRL 905



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 158/359 (44%), Gaps = 13/359 (3%)

Query: 137 IILNNMTNPDTAALALTYF---TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           +I+  M       +A  YF     K + +    +YN  + V  + R+LD  E++ ++M  
Sbjct: 102 VIVGVMKRLKDVNVAFQYFRWVERKTQQAHCPEVYNAFLMVMARTRNLDYLEQILEEMSV 161

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
            G    N     L++    ++   +A    E M  F   P    Y+++I A   A   + 
Sbjct: 162 AGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDP 221

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
              L+ + +   +  + + F+TL++++   G  D  L++ +EMK+     +++ YN  +D
Sbjct: 222 MLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCID 281

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
             G+  +       + EM   GL P+  TY +L+    +AR  ++ + ++ E+       
Sbjct: 282 CFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVP 341

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
            V  YNT++      G  DEA+ + E  K  + C P    ++ ++T    +GKV EA  +
Sbjct: 342 CVYAYNTMIMGYGSAGKFDEAYSLLERQK-RKGCIPSVIAYNCILTCLGRKGKVEEALRI 400

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 484
            +EM +    PNL     LI    KA   +  ++  + + E G+ P+        DR C
Sbjct: 401 HDEMRQDA-APNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLC 458



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 138/320 (43%), Gaps = 11/320 (3%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D+++A  +FD+M     +P+ +    ++   +  N+  +   W ER       P+   Y+
Sbjct: 86  DVEEALNVFDEM----SQPEVIV--GVMKRLKDVNVAFQYFRWVERKTQQAHCPE--VYN 137

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           + +    R  N++    + +      + +  +    L+  +  +        V E M+  
Sbjct: 138 AFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKF 197

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
             +P    Y  L+  +  A RP  + T++ +M + G   N + + +L+R + R    +  
Sbjct: 198 KFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAA 257

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI- 418
           LS+  EMK       + LYN  +     VG  D A++ F +MK+ +   PD  T++++I 
Sbjct: 258 LSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKA-QGLVPDDVTYTTLIG 316

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
            +C  R ++ EA  +F E+      P ++   ++I  YG A + D+    L R    G  
Sbjct: 317 VLCKAR-RLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCI 375

Query: 479 PDDRFCGCLLNVMTQTPKEE 498
           P      C+L  + +  K E
Sbjct: 376 PSVIAYNCILTCLGRKGKVE 395



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 90/202 (44%), Gaps = 3/202 (1%)

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
            YN  L  M R +    ++ I +EM+  G   + +    L+ ++ ++   ++   V   M
Sbjct: 135 VYNAFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMM 194

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           ++   + + + Y TL+   +     D    +F  M+     + +   F++++ + +  G+
Sbjct: 195 RKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEI-GYEANVHLFTTLVRVFAREGR 253

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
           +  A ++ +EM    F  +L +    I C+GK  + D   +  + +   G+ PDD     
Sbjct: 254 IDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTT 313

Query: 487 LLNVMTQTPKEELGKLVECVEK 508
           L+ V+ +  +  L + VE  E+
Sbjct: 314 LIGVLCKARR--LDEAVELFEE 333



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPN 217
           LK S   + Y++ +      R  +KA   + +M  +G+KP+N+T++T+I+  A+  N+  
Sbjct: 756 LKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVM- 814

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +A   F+R  + G  PD+  Y++MI+    A     A+ +++  R +  R++      L+
Sbjct: 815 EARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLL 874


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 168/356 (47%), Gaps = 12/356 (3%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKASKEV---ILYNVTMKVFRKCRDLDKAERLFDDM 191
           C I+++ +     +  AL  F   ++ S  V   ++Y   +    K + LD+A  +  +M
Sbjct: 47  CSILIDGLCKAKRSIDALRCF-RAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEM 105

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
            D G +P+ VT+++LI     NN P++A E FE M S  C P  +TY++++D   R G +
Sbjct: 106 RDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKL 165

Query: 252 EMAFGLYD-----RARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
           E A  L+      R+ +   R  PN   +S LI     A      + + E MKA G  P+
Sbjct: 166 ERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPD 225

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           +ITY  L+D + +  +      + +EM D G  PN  TY SLL    RAR   D L++ R
Sbjct: 226 VITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMR 285

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           +M  +G   +V  Y TL+     VG   +A  +  DM       PD   ++ +I      
Sbjct: 286 DMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGG-TPDLMIYNMLINGLCKA 344

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +V E+ A+    +  G +P++   +S+I    ++ R D+  R L  +   G  PD
Sbjct: 345 DQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPD 400



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 167/374 (44%), Gaps = 10/374 (2%)

Query: 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR-------GVK 197
           PD A   L      ++ S  ++ YN  +    +   L++A  LF +MLDR          
Sbjct: 130 PDRAQ-ELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCS 188

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           P+ +T+S LI      N  ++AVE  E M + GC PD +TY+ ++D   +   V  A+ +
Sbjct: 189 PNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEV 248

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
                +     +   +++L+     A      L +  +M   G  PN++TY  L+D + +
Sbjct: 249 LREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCK 308

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
             R      +  +M D G +P+   Y  L+    +A   ++++++ R     G++  V  
Sbjct: 309 VGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVT 368

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           Y++++         DEA  +   +K S  C PD   +S++I      GKV EA  ++  M
Sbjct: 369 YSSVIYGLCRSNRLDEACRLLLYVK-SRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVM 427

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK- 496
              G + ++   ++LI    KA R D+    L R+  +G  P       L+  +      
Sbjct: 428 AGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHL 487

Query: 497 EELGKLVECVEKSN 510
           +E  +LVE +E+SN
Sbjct: 488 DEAIELVEEMERSN 501



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 142/323 (43%), Gaps = 7/323 (2%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           + S  VI Y+V +    K   + +A  L + M  RG  PD +T++ L+      +    A
Sbjct: 186 RCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAA 245

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR-IDPNA--FSTL 276
            E    M   GC P+ +TY+S++    RA  V  A  L    R+   R   PN   + TL
Sbjct: 246 WEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALM---RDMTCRGCTPNVVTYGTL 302

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           I      G       +  +M   G  P+++ YN L++ + +A +  +   + +     G+
Sbjct: 303 IDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGI 362

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            P+  TY+S++    R+   ++   +   +K +G    V LY+TL+      G  DEAF+
Sbjct: 363 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD 422

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           ++E M + + C  D  T+S++I      G+V EA  +   M+  G  P+     SLI+  
Sbjct: 423 LYEVM-AGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGL 481

Query: 457 GKAQRTDDVVRALNRLPELGITP 479
                 D+ +  +  +      P
Sbjct: 482 CDLNHLDEAIELVEEMERSNCAP 504



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 150/333 (45%), Gaps = 5/333 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALAL         +  V+ Y   +    K   +  A  +  DM+D+G  PD + ++ LI+
Sbjct: 280 ALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLIN 339

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                +  ++++    R  S G  PD +TYSS+I    R+  ++ A  L    ++     
Sbjct: 340 GLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPP 399

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +STLI     AG  D   ++YE M   G   +++TY+ L+D + +A R  +   + 
Sbjct: 400 DVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLL 459

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             M   G  P+  TY SL++      + ++ + +  EM+      S   YN L+     +
Sbjct: 460 ARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRM 519

Query: 389 GYTDEAFEIFEDMK----SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
              D A  + E  K    ++     D+  +SS+I      G+V+EA   F EM++ G  P
Sbjct: 520 ERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIP 579

Query: 445 NLFVLTSLIQCYGKAQRTDDVVR-ALNRLPELG 476
           +    + L++   K++   ++    L+++ +LG
Sbjct: 580 DHITYSILLEGLKKSKDLHELRHLVLDQMVQLG 612



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 164/389 (42%), Gaps = 53/389 (13%)

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA------- 283
           C PD  TY++++  + R G ++ A   +D  R++   + PN F   I + G         
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKN--LVPNVFLCSILIDGLCKAKRSID 62

Query: 284 ------------------------------GNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
                                            D  L +  EM+  G +PN++TYN+L+D
Sbjct: 63  ALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLID 122

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ- 372
            + +   P + + +++ M     SP+  TY +LL    R    E  +++++EM ++    
Sbjct: 123 GLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHD 182

Query: 373 ------LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
                  +V  Y+ L+          +A E+ E MK +  C PD  T++ ++       K
Sbjct: 183 MDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMK-ARGCSPDVITYTILVDGLCKESK 241

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
           V+ A  +  EML+AG  PNL    SL+    +A+R  D +  +  +   G TP+    G 
Sbjct: 242 VAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGT 301

Query: 487 LLNVMTQTP--KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 544
           L++ + +    K+    L + ++K  +    +  +L+          +    L  ++S  
Sbjct: 302 LIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGG 361

Query: 545 VKK---AYCNCLIDLCVNLNLLENACKLL 570
           +K     Y + +  LC + N L+ AC+LL
Sbjct: 362 IKPDVVTYSSVIYGLCRS-NRLDEACRLL 389



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 166/395 (42%), Gaps = 45/395 (11%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +VI Y + +    K   +  A  +  +MLD G  P+ VT+++L+         + A+ 
Sbjct: 223 SPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALA 282

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
               M   GC P+ +TY ++ID   + G V+ A  +     ++    D   ++ LI    
Sbjct: 283 LMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLC 342

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNN------------------------------- 310
            A   D  + +     + G+KP+++TY++                               
Sbjct: 343 KADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVI 402

Query: 311 ----LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
               L+D + +A +  +   +Y+ M  +G   +  TY++L+    +A   ++   +   M
Sbjct: 403 LYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARM 462

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
              G   S   YN+L+    D+ + DEA E+ E+M+ S NC P + T++ +I    CR +
Sbjct: 463 VRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERS-NCAPSAVTYNILIH-GMCRME 520

Query: 427 VSEAEAMFNEMLEA------GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             ++  +  E  +A      G   +    +SLI    KA R  + +     + + G+ PD
Sbjct: 521 RVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPD 580

Query: 481 DRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGY 515
                 LL  + ++  ++L +L   V     +LGY
Sbjct: 581 HITYSILLEGLKKS--KDLHELRHLVLDQMVQLGY 613


>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
 gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
          Length = 1354

 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 116/553 (20%), Positives = 238/553 (43%), Gaps = 46/553 (8%)

Query: 168  YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
            Y+  +  + +  + ++A R  D+M+  G++P+    + ++          +  E+++R+P
Sbjct: 673  YSALLSAYAETGNFERATRALDNMVAAGLQPNAACANYVLEAFGRAGKAKELSEFYQRLP 732

Query: 228  SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW--------------------- 266
              G  P++ T+  +  A+ R GN+E A  +Y + R   +                     
Sbjct: 733  EMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSRETVEI 792

Query: 267  --------------RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
                           +D + ++ +I LY   G++     V++ M+ IG  P+  T+N L+
Sbjct: 793  DAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLI 852

Query: 313  DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                R +   + + + +EM   G +PN +TY +L+ AYGR +  ED   V++ + E G +
Sbjct: 853  MLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCK 912

Query: 373  LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
               T YN ++ +    G   +  E+ E MK ++  +P   T   ++      G   +AE 
Sbjct: 913  PDATAYNVMINVYRKAGEHRKIEEVIEQMK-ADGFEPSLTTIHMLMDSYGKGGATGKAEE 971

Query: 433  MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            +   + E G  P+    TS+I  +   +     V  L ++ +  + P      C +   +
Sbjct: 972  VLETLPEIGMSPDAIHYTSIINSHLNNKDYLSAVIWLRKMTDACVRPTHVTITCFVGAAS 1031

Query: 493  QTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKA---Y 549
               +     +   + K+ S+ G+ + L L   +      ++  ++F+ + +   +A    
Sbjct: 1032 VCERSSHALM---LLKALSEAGFSLPLRL-MTECTPKVVQDMQDIFDQLQESGPEACQGV 1087

Query: 550  CNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQ-WSLHLKSLSLGAALTALHI 608
             N L+DL         A  +  + +   +YT + +R   + W    + LS GAAL AL +
Sbjct: 1088 VNVLMDLLWAFRQCATAALVFAVAIESNIYTQVLARVKDRNWGADFRRLSPGAALVALIL 1147

Query: 609  WINDLSKALESGEEFPPLLGINTGHGKHKYSDKG-LASVFESHLKELNAPFHDSPDKVGW 667
            W++ +  A   G   PP   I    G  K +++  +++  ++HL ++ +PF  S  + G 
Sbjct: 1148 WLDQMQDASLQGSPVPP-KSIQIDIGSSKLNNQASVSNTIKTHLWQMGSPFLPSKTRAGV 1206

Query: 668  FLTTEAAAKSWLE 680
             +    A   WL+
Sbjct: 1207 LVAKSHALCMWLK 1219



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 151/331 (45%), Gaps = 37/331 (11%)

Query: 164 EVILYNVTMKV-FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
           +++ +N+ +K   R       A  L  D+   G++PD +T++TLIS   +NN  + A+  
Sbjct: 148 DLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILI 207

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           FE M   GCDPD  TY++MI  YGRAG VE A  ++        RI              
Sbjct: 208 FEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIF--------RI-------------- 245

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
                        M+  G  P+ +TYN++L    R  R  +V+ I   M D   S +  T
Sbjct: 246 -------------MQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEIT 292

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +++  YG+A        +Y +MKE+G       +  L+      G+ +EA  +FEDM 
Sbjct: 293 YNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDML 352

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            S+  +P    FS+MI   +     S+AE  ++ ML AG  P+L   + ++  + KA+  
Sbjct: 353 KSQ-VRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAEMP 411

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           +  +     +   G+ P+      ++ V  Q
Sbjct: 412 EKCIILYKAMVGSGLKPELSVYAIMVRVFYQ 442



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 162/365 (44%), Gaps = 44/365 (12%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF-ERMPSFGCDPDALTYSS 240
           D+A   F DM   G++ D     T + C         A E   + + +F    D+  + +
Sbjct: 582 DEALARFLDMTTEGLEMDAEVLQTAVMCYCRKGFAFVAHELLIDCLHAFEVK-DSAMHVA 640

Query: 241 MIDAYGRAG---NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           +I +YG+     N E+ F    R     +  + +A+S L+  Y   GNF+      + M 
Sbjct: 641 IIASYGKLKLWQNAEIVFRDLQR---HGFAGNTSAYSALLSAYAETGNFERATRALDNMV 697

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
           A G++PN    N +L+  GRA +  ++   Y+ + + G++PN  T+  +  A+ R    E
Sbjct: 698 AAGLQPNAACANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNLE 757

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE------------ 405
           +  S+YR+M+E G   S+ ++  LLA+ +      +A E+ +D+K +             
Sbjct: 758 EARSMYRQMREAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMI 817

Query: 406 ----------------------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
                                  C PD+ TF+++I + S    V EA+A+  EM++ G  
Sbjct: 818 SLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNA 877

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 503
           PN+   T+LI  YG+ Q  +D       + E G  PD      ++NV  +  +    K+ 
Sbjct: 878 PNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHR--KIE 935

Query: 504 ECVEK 508
           E +E+
Sbjct: 936 EVIEQ 940



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 146/322 (45%), Gaps = 3/322 (0%)

Query: 170 VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
           V + V  +      A+ LFD   +  +      +++L+S    +   N   +   RM   
Sbjct: 85  VMLSVLGRANQPGLAQELFDRA-ESSIGNCVQVYNSLMSVYARHGDWNSVQQLLCRMQDR 143

Query: 230 GCDPDALTYSSMIDAYGRAGNVE-MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
           GC PD +T++ +I A  R G  E +A  L         R D   ++TLI           
Sbjct: 144 GCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSD 203

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            + ++EEM+  G  P++ TYN ++   GRA R     +I++ M + G +P+  TY S+L 
Sbjct: 204 AILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLH 263

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A+ R    E+   +   M++         YNT++ M    G   +A E++  MK    C 
Sbjct: 264 AFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRC- 322

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PDS TF+ +I      G V+EA AMF +ML++   P L   +++I  Y KA    D    
Sbjct: 323 PDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEHT 382

Query: 469 LNRLPELGITPDDRFCGCLLNV 490
            + +   G+ PD      +L+V
Sbjct: 383 YSCMLRAGVRPDLLAYSVMLDV 404



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 91/184 (49%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +YN  + ++ K     KA  +F  M + G  PD  TF+TLI     N +  +A      M
Sbjct: 812 IYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREM 871

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G  P+  TY+++I AYGR    E A  ++        + D  A++ +I +Y  AG  
Sbjct: 872 IKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEH 931

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                V E+MKA G +P++ T + L+D+ G+     + + + + + + G+SP+   Y S+
Sbjct: 932 RKIEEVIEQMKADGFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYTSI 991

Query: 347 LRAY 350
           + ++
Sbjct: 992 INSH 995



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 105/235 (44%), Gaps = 36/235 (15%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           P+    + M+   GRA    +A  L+DRA +         +++L+ +Y   G+++    +
Sbjct: 78  PNPRMLAVMLSVLGRANQPGLAQELFDRAESSIGNC-VQVYNSLMSVYARHGDWNSVQQL 136

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
              M+  G +P+++T+N                 + K  T  G+     +          
Sbjct: 137 LCRMQDRGCRPDLVTFN----------------IVIKARTRGGMQEGLAS---------- 170

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
                   S+ +++   G++     YNTL++ C+      +A  IFE+M+  + C PD W
Sbjct: 171 --------SLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQR-QGCDPDIW 221

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           T+++MI++    G+V  A ++F  M E GF P+     S++  + +  R ++V R
Sbjct: 222 TYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVER 276



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 128/329 (38%), Gaps = 35/329 (10%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           + S + I YN  + ++ K     KAE L+  M + G  PD+VTF+ LI         N+A
Sbjct: 285 RCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEA 344

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              FE M      P    +S+MI AY +A     A   Y        R D  A+S ++ +
Sbjct: 345 AAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDV 404

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD------ 333
           +  A   + C+ +Y+ M   G+KP +  Y  ++    +     +++ + KEM        
Sbjct: 405 FFKAEMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQKSSLAEIENLSKEMVQSSASLA 464

Query: 334 ------------------------NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
                                    G++    T   +L A+  +    D   +   +   
Sbjct: 465 ALSSTLAKGGFYAEAAVVLKISFAQGVAVKVETLNDVLGAFEASGKLSDARDLVHAVSSI 524

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCR-GKV 427
              ++  LY  L  M A  G   EA    E+M++S+   Q     F  ++     R G  
Sbjct: 525 EPSVAAHLYKRLALMLAKAGRFSEA---EEEMRTSQTYGQAQVSDFLKVLVASYDRAGMQ 581

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
            EA A F +M   G E +  VL + + CY
Sbjct: 582 DEALARFLDMTTEGLEMDAEVLQTAVMCY 610



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 92/193 (47%), Gaps = 8/193 (4%)

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
           CLNV     A    PN      +L  +GRA +P   + ++ +  ++ +      Y SL+ 
Sbjct: 69  CLNV-----ARWYAPNPRMLAVMLSVLGRANQPGLAQELF-DRAESSIGNCVQVYNSLMS 122

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE-AFEIFEDMKSSENC 407
            Y R         +   M+++G +  +  +N ++      G  +  A  + +D+ ++   
Sbjct: 123 VYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAA-GL 181

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD+ T++++I+ CS   ++S+A  +F EM   G +P+++   ++I  YG+A R +    
Sbjct: 182 RPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASS 241

Query: 468 ALNRLPELGITPD 480
               + E G TPD
Sbjct: 242 IFRIMQEQGFTPD 254



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 82/475 (17%), Positives = 176/475 (37%), Gaps = 75/475 (15%)

Query: 151 ALTYFTNKLKASKEVIL--YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A   F + LK+     L  ++  +  + K      AE  +  ML  GV+PD + +S ++ 
Sbjct: 344 AAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLD 403

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV--------EMA------ 254
                 +P K +  ++ M   G  P+   Y+ M+  + +  ++        EM       
Sbjct: 404 VFFKAEMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQKSSLAEIENLSKEMVQSSASL 463

Query: 255 ---------FGLYDRAR-------NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
                     G Y  A         +   +     + ++  +  +G      ++   + +
Sbjct: 464 AALSSTLAKGGFYAEAAVVLKISFAQGVAVKVETLNDVLGAFEASGKLSDARDLVHAVSS 523

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
           I        Y  L   + +A R  + +   +     G +   +    L+ +Y RA   ++
Sbjct: 524 IEPSVAAHLYKRLALMLAKAGRFSEAEEEMRTSQTYGQAQVSDFLKVLVASYDRAGMQDE 583

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED------------------ 400
            L+ + +M  +G+++   +  T +      G+   A E+  D                  
Sbjct: 584 ALARFLDMTTEGLEMDAEVLQTAVMCYCRKGFAFVAHELLIDCLHAFEVKDSAMHVAIIA 643

Query: 401 ----MKSSENCQ------------PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
               +K  +N +             ++  +S++++  +  G    A    + M+ AG +P
Sbjct: 644 SYGKLKLWQNAEIVFRDLQRHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQP 703

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV- 503
           N      +++ +G+A +  ++     RLPE+GITP+ R    + +  ++    E  + + 
Sbjct: 704 NAACANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMY 763

Query: 504 -ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL-FNSISKDVKKAYCNCLIDL 556
            +  E   S    V K LL        + +E  E+    + KD+KKA     +D+
Sbjct: 764 RQMREAGFSPSIQVFKALL------ALYSRETVEIDAEELVKDIKKAGLELDMDI 812



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 116/314 (36%), Gaps = 45/314 (14%)

Query: 99   YNSLVKLAADLDSCSATEDDVFSVLRCLG--DDFLEQDCVIILNNMTNPDTAALALTYFT 156
            YN ++ L + L S       VF  ++ +G   D    + +I+L +       A AL    
Sbjct: 813  YNHMISLYSKLGSYRKAAL-VFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREM 871

Query: 157  NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
             K   +  +  Y   +  + + +  + AE +F  + + G KPD   ++ +I+  R     
Sbjct: 872  IKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEH 931

Query: 217  NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
             K  E  E+M + G +P   T   ++D+YG+ G    A                      
Sbjct: 932  RKIEEVIEQMKADGFEPSLTTIHMLMDSYGKGGATGKA---------------------- 969

Query: 277  IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
                           V E +  IG+ P+ I Y +++++    K         ++MTD  +
Sbjct: 970  -------------EEVLETLPEIGMSPDAIHYTSIINSHLNNKDYLSAVIWLRKMTDACV 1016

Query: 337  SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
             P   T    + A          L + + + E G  L +     L+  C      D   +
Sbjct: 1017 RPTHVTITCFVGAASVCERSSHALMLLKALSEAGFSLPL----RLMTECTPKVVQDMQ-D 1071

Query: 397  IFEDMKSS--ENCQ 408
            IF+ ++ S  E CQ
Sbjct: 1072 IFDQLQESGPEACQ 1085


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 170/345 (49%), Gaps = 11/345 (3%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A AL      +  S +V+ YN  +  + KC DL++ E+L  +M   G   D VT++ LI+
Sbjct: 219 ARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALIN 278

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           C        KA  +F  M   G   + +T+S+ +DA+ + G V+ A  L+ + R      
Sbjct: 279 CFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMP 338

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           +   +++L+     AG  D  + + +EM   G+ PN++TY  ++D + +  +  +   + 
Sbjct: 339 NEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVL 398

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD 387
             M   G+  N   Y +L+  +      E  L +  +MK KGM+L V+LY TL+  +C D
Sbjct: 399 SLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKD 458

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
               DEA  +   M      +P++  +++++      GK SEA A+ +++L++GF+PN+ 
Sbjct: 459 -QKVDEAKSLLHKMAGC-GLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVV 516

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 484
              +LI    KA    + +   N++ ELG+ P+        D FC
Sbjct: 517 TYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFC 561



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 144/312 (46%), Gaps = 1/312 (0%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K   LD A  L D+M+ +G+ P+ VT++ ++          +A      M   G   + L
Sbjct: 352 KAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANEL 411

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            Y+++I  +    N E A  L ++ +N+   +D + + TLI         D   ++  +M
Sbjct: 412 LYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKM 471

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
              G++PN + Y  ++D + +A +  +   +  ++ D+G  PN  TY +L+    +A   
Sbjct: 472 AGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSI 531

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            + +S + +M+E G+  +V  Y  L+     +G  ++A  +  +M   +    D   ++S
Sbjct: 532 SEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEM-IDKGMSLDKVVYTS 590

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I     +  + +A A+  +M+E+G + +L+  T  I  +       +    L+ +   G
Sbjct: 591 LIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTG 650

Query: 477 ITPDDRFCGCLL 488
           ITPD     CL+
Sbjct: 651 ITPDKTVYNCLI 662



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 140/308 (45%), Gaps = 5/308 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           LD A R    +    V P+  T + ++     N         F+ +P     P+  T++ 
Sbjct: 150 LDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFDLLPV----PNVFTFNI 205

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +ID   + G +  A  L+ R +      D   +++LI  YG  G+ +    +  EM+  G
Sbjct: 206 VIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSG 265

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
              +++TYN L++   +  R  +  + + EM   G+  N  T+++ + A+ +    ++ +
Sbjct: 266 CAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAM 325

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            ++ +M+ +GM  +   Y +L+      G  D+A  + ++M   +   P+  T++ M+  
Sbjct: 326 KLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEM-VHQGLVPNVVTYTVMVDG 384

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               GKV+EA+ + + M   G + N  + T+LI  +     ++  +  LN++   G+  D
Sbjct: 385 LCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELD 444

Query: 481 DRFCGCLL 488
               G L+
Sbjct: 445 VSLYGTLI 452



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 119/256 (46%), Gaps = 1/256 (0%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           ++A  L + M ++G++ D   + TLI     +   ++A     +M   G  P+ + Y+++
Sbjct: 427 ERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTI 486

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           +DA  +AG    A  L  +  +  ++ +   +  LI     AG+    ++ + +M+ +G+
Sbjct: 487 MDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGL 546

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            PN+  Y  L+D   +     +   +  EM D G+S +   Y SL+  Y +    +D  +
Sbjct: 547 DPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFA 606

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           +  +M E G+QL +  Y   ++   ++    EA  +  +M  +    PD   ++ +I   
Sbjct: 607 LKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGT-GITPDKTVYNCLIRKY 665

Query: 422 SCRGKVSEAEAMFNEM 437
              G + EA ++ NEM
Sbjct: 666 QKLGNMEEASSLQNEM 681



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 100/242 (41%), Gaps = 32/242 (13%)

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV----- 324
           P+   TL+ L    G  D  +     ++ + V PN  T N++L  + R ++   V     
Sbjct: 134 PSVVDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFD 193

Query: 325 --------------------------KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
                                     + ++  M   G SP+  TY SL+  YG+    E+
Sbjct: 194 LLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEE 253

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
              +  EM++ G    V  YN L+   +  G  ++A+  F +MK  +    +  TFS+ +
Sbjct: 254 VEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMK-RQGVVANVVTFSTFV 312

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 G V EA  +F +M   G  PN F  TSL+    KA R DD +  L+ +   G+ 
Sbjct: 313 DAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLV 372

Query: 479 PD 480
           P+
Sbjct: 373 PN 374



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 110/230 (47%), Gaps = 6/230 (2%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           C+D  +D+A+ L   M   G++P+ V ++T++         ++AV    ++   G  P+ 
Sbjct: 456 CKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNV 515

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVY 293
           +TY ++ID   +AG++  A   +++ R  +  +DPN  A++ LI  +   G+ +  +++ 
Sbjct: 516 VTYCALIDGLCKAGSISEAISHFNKMR--ELGLDPNVQAYTALIDGFCKIGSLNKAMHLM 573

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
            EM   G+  + + Y +L+D   +         +  +M ++GL  +   Y   +  +   
Sbjct: 574 NEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNM 633

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
              ++   V  EM   G+    T+YN L+     +G  +EA  +  +M+S
Sbjct: 634 NMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMES 683



 Score = 43.9 bits (102), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 69/164 (42%), Gaps = 2/164 (1%)

Query: 138 ILNNMTNPDTAALALTYFT--NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           +++ +    + + A+++F    +L     V  Y   +  F K   L+KA  L ++M+D+G
Sbjct: 521 LIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKG 580

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           +  D V +++LI           A     +M   G   D   Y+  I  +     ++ A 
Sbjct: 581 MSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEAR 640

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           G+           D   ++ LI+ Y   GN +   ++  EM+++
Sbjct: 641 GVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMESV 684


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 187/377 (49%), Gaps = 7/377 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV 196
           I++N   N      A + F  ++  S +V+ YN  +    K +++D+AE +F  M+++GV
Sbjct: 198 IVINGFFNEGQVDKAYSLFL-EMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGV 256

Query: 197 KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256
           KP+NVT++T+I         + A   F++M   G  P  +TY+++ID   +A  V+ A G
Sbjct: 257 KPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEG 316

Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           ++ +  +   + D   ++T+I     A   D    V+++M   GVKP+ +TY  ++D + 
Sbjct: 317 VFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLC 376

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +A+   + + ++++M D G+ PN  TY  L+  Y      E+ +   +EM    ++  V 
Sbjct: 377 KAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVF 436

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            Y  LL      G  +EA  +F+ M   +  +P    +  M+     +G +SE   + N 
Sbjct: 437 TYGLLLDYLCKNGKCNEARSLFDSM-IRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNL 495

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           M+  G  PN  +  ++I  Y K    D+V+    ++ + G++P+    G L++ + +   
Sbjct: 496 MVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCK--- 552

Query: 497 EELGKLVECVEKSNSKL 513
             LG++ + V + N  +
Sbjct: 553 --LGRVDDAVLQFNQMI 567



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 174/322 (54%), Gaps = 4/322 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V+ YN+ +  F     +DKA  LF   L+ GV PD VT++T+I         ++A +
Sbjct: 190 SPDVVSYNIVINGFFNEGQVDKAYSLF---LEMGVSPDVVTYNTIIDGLCKAQEVDRAED 246

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F++M   G  P+ +TY+++ID   +A  V+MA G++ +  ++  +     ++T+I    
Sbjct: 247 VFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLC 306

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A   D    V+++M   GVKP+ +TYN ++D + +A+   + + ++++M D G+ P+  
Sbjct: 307 KAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNL 366

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY  ++    +A+  +    V+++M +KG++ +   YN L+      G  +E  +  ++M
Sbjct: 367 TYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEM 426

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
            S+ + +PD +T+  ++      GK +EA ++F+ M+  G +P++ +   ++  YGK   
Sbjct: 427 -SAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGA 485

Query: 462 TDDVVRALNRLPELGITPDDRF 483
             ++   LN +   GI+P+ R 
Sbjct: 486 LSEMHDLLNLMVANGISPNHRI 507



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 157/318 (49%), Gaps = 1/318 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  +    K + +D+AE +F  M+DRGVKPD+VT++T+I         +KA   F++
Sbjct: 296 VTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQ 355

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  PD LTY+ +ID   +A +V+ A G++ +  ++  + +   ++ LI  Y + G 
Sbjct: 356 MIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQ 415

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           ++  +   +EM A  ++P++ TY  LLD + +  +  + ++++  M   G+ P+   Y  
Sbjct: 416 WEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGI 475

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +L  YG+     +   +   M   G+  +  ++NT++   A     DE   IF  MK  +
Sbjct: 476 MLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMK-QQ 534

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              P+  T+ ++I      G+V +A   FN+M+  G  PN  V  SL+       + + V
Sbjct: 535 GLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKV 594

Query: 466 VRALNRLPELGITPDDRF 483
                 +   GI PD  F
Sbjct: 595 EELFLEMLNQGIRPDIVF 612



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 161/369 (43%), Gaps = 13/369 (3%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           ++N  +  + K   +D+   +F  M  +G+ P+ VT+ TLI         + AV  F +M
Sbjct: 507 IFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQM 566

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            + G  P+ + ++S++         E    L+    N+  R D   F+T++      G  
Sbjct: 567 INEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRV 626

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                + + M  +G+KP++I+YN L+D    A R  +   +   M   GL PN  +Y +L
Sbjct: 627 MEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTL 686

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L  Y +A   ++   ++REM  KG+   V  YNT+L      G   EA E++ +M  S  
Sbjct: 687 LHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRK 746

Query: 407 CQPDSWTFS--SMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                W+    S+I    C+     EA  +F  +     + ++     +I    K  R +
Sbjct: 747 L----WSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKE 802

Query: 464 DVVRALNRLPELGITPDDRFCGCLL-NVMTQTPKEELGKLVECVEKSNSK-----LGYVV 517
           D +     +P  G+ P       +  N++ +   EEL  L   +EKS +      L  ++
Sbjct: 803 DAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALI 862

Query: 518 KLLLEEQDI 526
           + LL+  +I
Sbjct: 863 RKLLDRGEI 871



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 150/345 (43%), Gaps = 47/345 (13%)

Query: 181 LDKAERLFDDMLDRGVKPDNV----TFSTLISCARMNNLPNKAVEWFERMP---SFGCDP 233
           L  A +LFD++L    +P +V       +++S A+ ++    AV  F RM    S    P
Sbjct: 24  LHDALKLFDELLLHA-RPASVRALNQLLSVVSRAKCSSSSKLAVSRFNRMLRDCSNKVAP 82

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV- 292
           D  TYS +I  + R G +E+ F  +       WR+D    + L+K           ++V 
Sbjct: 83  DCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVL 142

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN------------------ 334
             +M  +G +  +++YN LL  +   +R  + + +   M D                   
Sbjct: 143 LRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVING 202

Query: 335 -----------------GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
                            G+SP+  TY +++    +A+  +    V+++M EKG++ +   
Sbjct: 203 FFNEGQVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVT 262

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNE 436
           YNT++         D A  +F+ M   +  +P + T++++I  +C  +  V  AE +F +
Sbjct: 263 YNTIIDGLCKAQEVDMAEGVFQKM-VDKGVKPSNVTYNTIIDGLCKAQA-VDRAEGVFQQ 320

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           M++ G +P+     ++I    KAQ  D       ++ + G+ PD+
Sbjct: 321 MIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDN 365



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 134/291 (46%), Gaps = 36/291 (12%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ +N  +    K   + +A RL D M+  G+KPD ++++TLI      +  ++AV+  
Sbjct: 609 DIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLL 668

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M S G  P+ ++Y++++  Y +AG ++ A+                            
Sbjct: 669 DGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAY---------------------------- 700

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                CL  + EM   GV P + TYN +L+ + R+ R  + + +Y  M  +    +  TY
Sbjct: 701 -----CL--FREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTY 753

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + +L  + +    ++   +++ +    +QL +  +N ++      G  ++A ++F  + +
Sbjct: 754 SIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPA 813

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           +    P   T+  +       G + E + +F+ M ++G  PN  +L +LI+
Sbjct: 814 N-GLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIR 863


>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 863

 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 175/353 (49%), Gaps = 12/353 (3%)

Query: 134 DCVIILNNMTN-PDTAALA--LTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDD 190
           D   ++N +++ P   ++A  L  F NKL  +     + +  K F    D  ++ RLF  
Sbjct: 75  DVESLINKLSSLPPRGSIARCLDIFKNKLSLND----FALVFKEFAGRGDWQRSLRLFKY 130

Query: 191 MLDRGV--KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
           M  R +  KP+   ++ +IS      L +K +E F+ MPS G      +Y+++I+AYGR 
Sbjct: 131 M-QRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRN 189

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNMIT 307
           G  E +  L DR +N+K       ++T+I      G +++G L ++ EM+  G++P+++T
Sbjct: 190 GRYETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVT 249

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           YN LL          + + +++ M D G+ P+  TY+ L+  +G+ R  E    +  EM 
Sbjct: 250 YNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMA 309

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
             G    +T YN LL   A  G   EA  +F  M+++  C P++ T+S ++ +    G+ 
Sbjct: 310 SGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA-GCTPNANTYSVLLNLFGQSGRY 368

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +   +F EM  +  +P+      LI+ +G+     +VV   + + E  I PD
Sbjct: 369 DDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPD 421



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 127/552 (23%), Positives = 239/552 (43%), Gaps = 56/552 (10%)

Query: 164 EVILYNVTMKVFRKCRDL-DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
           +++ YN  +      R L D+AE +F  M D G+ PD  T+S L+          K  + 
Sbjct: 246 DIVTYNTLLSAC-AIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDL 304

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
              M S G  PD  +Y+ +++AY ++G+++ A G++ + +      + N +S L+ L+G 
Sbjct: 305 LSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQ 364

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           +G +D    ++ EMK+    P+  TYN L++  G      +V T++ +M +  + P+  T
Sbjct: 365 SGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMET 424

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y  ++ A G+    ED   + + M    +  S   Y  ++         +EA   F  M 
Sbjct: 425 YEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMH 484

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
                 P   T+ S++   +  G V E+EA+ + ++++G   N     + I+ Y +  + 
Sbjct: 485 EV-GSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKF 543

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV-ECVEKSN---------SK 512
           ++ V+    + +    PD+R    +L+V +        +LV EC E+           S 
Sbjct: 544 EEAVKTYVDMEKSRCDPDERTLEAVLSVYS------FARLVDECREQFEEMKASDILPSI 597

Query: 513 LGYVVKL--------------LLEE--------------QDIEGDFKKEAT--------E 536
           + Y + L              LLEE              Q I+GD+  ++         +
Sbjct: 598 MCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLD 657

Query: 537 LFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKS 596
             NS    +   + N L+D    L   E A ++L       ++ ++  ++   WS+ +  
Sbjct: 658 KLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFPELFRKNKLVWSVDVHR 717

Query: 597 LSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGK-HKYSDKGLASVFESHLKELN 655
           +S G   TAL +W+ND++  L +GE+ P L  + +  G+  K S    +S+ ++    L 
Sbjct: 718 MSEGGMYTALSVWLNDMNDMLLNGEDLPQLAVVVSVRGQLEKSSAARESSIAKAAFSFLQ 777

Query: 656 APFHDSPDKVGW 667
                S    GW
Sbjct: 778 DHVSSSFSFTGW 789



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 157/324 (48%), Gaps = 3/324 (0%)

Query: 160 KASKEVILYNVTMKV-FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           K S  ++ YN  +    R   D +    LF +M   G++PD VT++TL+S   +  L ++
Sbjct: 206 KISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDE 265

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A   F  M   G  PD  TYS +++ +G+   +E    L     +     D  +++ L++
Sbjct: 266 AEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLE 325

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            Y  +G+    + V+ +M+A G  PN  TY+ LL+  G++ R   V+ ++ EM  +   P
Sbjct: 326 AYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDP 385

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  TY  L+  +G   Y ++ ++++ +M E+ ++  +  Y  ++  C   G  ++A +I 
Sbjct: 386 DAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKIL 445

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           + M ++ +  P S  ++ +I          EA   FN M E G  P++    SL+  + +
Sbjct: 446 QYM-TANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFAR 504

Query: 459 AQRTDDVVRALNRLPELGITPDDR 482
                +    L+RL + GI P +R
Sbjct: 505 GGLVKESEAILSRLVDSGI-PRNR 527



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 115/283 (40%), Gaps = 19/283 (6%)

Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD 180
            ++   G   L +D   IL  MT  D    +  Y T  ++A  +  LY            
Sbjct: 427 GIIFACGKGGLHEDARKILQYMTANDIVPSSKAY-TGVIEAFGQAALY------------ 473

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
            ++A   F+ M + G  P   T+ +L+       L  ++     R+   G   +  T+++
Sbjct: 474 -EEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNA 532

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKA 298
            I+AY + G  E A   Y     EK R DP+      ++ +Y  A   D C   +EEMKA
Sbjct: 533 QIEAYKQGGKFEEAVKTY--VDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKA 590

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGE 357
             + P+++ Y  +L   G+ +R   V  + +EM  N +S        +++  Y      +
Sbjct: 591 SDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQ 650

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
               V  ++  +G  L +  YN LL     +G  + A  +  +
Sbjct: 651 IVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNE 693


>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
          Length = 577

 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 123/481 (25%), Positives = 224/481 (46%), Gaps = 44/481 (9%)

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE--MAFGLYDRARNEKWRIDPNAFS 274
           + A +  + M     +PD ++++++I+A  ++G +   +A  L    R    R D   ++
Sbjct: 11  DDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYN 70

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
           TLI       N D  + V+EEM A   +P++ TYN ++   GR  +  + + ++KE+ + 
Sbjct: 71  TLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEK 130

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G  P+  TY SLL A+ +    E    V  E+ + G +     YNT++ M   +G  D A
Sbjct: 131 GFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLA 190

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
             ++++M++   C PD+ T++ ++       ++SEA  +  EM +AG +P L   ++LI 
Sbjct: 191 LGLYDEMRAI-GCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALIC 249

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG 514
            Y K+ R DD  R  +R+ E G+ PD      +L+V  ++  +E  KL+  + ++  K G
Sbjct: 250 AYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARS--DETRKLM-VLYRAMIKDG 306

Query: 515 Y-----VVKLLL-------EEQDIEGDFKK-EATELFNS--ISKDVKKAYCNCLIDLCVN 559
           Y     + ++LL       E  +IEG  +  EA    N   IS  + KA C     +   
Sbjct: 307 YKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVISSILIKAEC-----ISQG 361

Query: 560 LNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALES 619
            +LL+ AC              +Q   P       + L+   +L  +    + +  +L+ 
Sbjct: 362 ASLLKRAC--------------LQGYEPDDGPD--RQLASNMSLGVISKSQSAIDASLQG 405

Query: 620 GEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWL 679
             E P  + + TG G+  Y+   L     ++L E+ +PF     + G F+    + K WL
Sbjct: 406 APESPKSIVLVTGEGE--YNMVSLRKTIRAYLLEMGSPFLPCRSRSGRFVVKAYSLKMWL 463

Query: 680 E 680
           +
Sbjct: 464 K 464



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 176/373 (47%), Gaps = 14/373 (3%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDT--------AALALTYFTNKLKASKEVILY 168
           DD   +L  + D  +E D ++  N + N            AL L +   +     + I Y
Sbjct: 11  DDARQLLDAMRDQDIEPD-LVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITY 69

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +    +  +LD A  +F++M+    +PD  T++ ++S         +A   F+ +  
Sbjct: 70  NTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVE 129

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  PDA+TY+S++ A+ + G+VE    + +      +R D   ++T+I +YG  G  D 
Sbjct: 130 KGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDL 189

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L +Y+EM+AIG  P+ +TY  L+D++G+  R  +   + +EM D GL P   T+++L+ 
Sbjct: 190 ALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALIC 249

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           AY ++   +D    +  M E G++     Y  +L + A    T +   ++  M   +  +
Sbjct: 250 AYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAM-IKDGYK 308

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD   +  ++   +   +  E E +  +M EA FE N  V++S++    KA+        
Sbjct: 309 PDDGLYQVLLAALAKGNEHDEIEGVIQDM-EAVFEMNPLVISSILI---KAECISQGASL 364

Query: 469 LNRLPELGITPDD 481
           L R    G  PDD
Sbjct: 365 LKRACLQGYEPDD 377


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 161/312 (51%), Gaps = 2/312 (0%)

Query: 170 VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
           V + +  K   +  A  L +++   G +PD   +++LI+    N    +AV  F++M   
Sbjct: 3   VIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 230 GCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
           GC P  +TY+ +++ YG+ G       GL++  +N     D   ++TLI        ++ 
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEE 122

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
              V+E+MK++G  P+ +TYN LLD  G+++R  +   + +EM  NG SP+  TY SL+ 
Sbjct: 123 AAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLIS 182

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           AY R    E+ + +  +M E+G++L V  Y  +L+     G  + A  +FE+M+++  C+
Sbjct: 183 AYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTA-GCK 241

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           P+  TF+++I +   RGK +E   +F E+      P++    +L+  +G+     +V   
Sbjct: 242 PNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGV 301

Query: 469 LNRLPELGITPD 480
              +  +G  P+
Sbjct: 302 FKEMKRVGFVPE 313



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 162/349 (46%), Gaps = 36/349 (10%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  + V+ K R + +A  +  +M   G  P  VT+++LIS    + L  +A+E   +
Sbjct: 140 VTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQ 199

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G   D  TY++M+  + R G  E A  +++  R    + +   F+ LIK++G  G 
Sbjct: 200 MVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGK 259

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F   + V+EE+K     P+++T+N LL   G+     +V  ++KEM   G  P  +TY +
Sbjct: 260 FAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNT 319

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ AY R    +  +++Y+ M + G+   ++ YN +LA  A  G  +++ +I  +M+   
Sbjct: 320 LISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDG- 378

Query: 406 NCQPDSWTFSSMITICS---------------CRGKVS--------------------EA 430
            C+P+  T  S++   +               C G +                     EA
Sbjct: 379 MCKPNELTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEA 438

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           E  F E+   GF P+L  L ++I  YG+ Q        LN + E G TP
Sbjct: 439 ERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTP 487



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 148/317 (46%), Gaps = 37/317 (11%)

Query: 165 VILYNVTMKVFRKC-RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +I YNV + V+ K     +K   LF+ M + G+ PD  T++TLI+C R  +L  +A   F
Sbjct: 68  LITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVF 127

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M S G  PD +TY++++D YG++  ++ A                             
Sbjct: 128 EDMKSMGFVPDKVTYNTLLDVYGKSRRIKEA----------------------------- 158

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                 + V  EM+  G  P+++TYN+L+    R     +   +  +M + G+  +  TY
Sbjct: 159 ------IEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTY 212

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            ++L  + R    E  + V+ EM+  G + ++  +N L+ M  + G   E  ++FE++K 
Sbjct: 213 TAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKI 272

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
              C PD  T+++++ +    G  SE   +F EM   GF P      +LI  Y +    D
Sbjct: 273 C-CCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFD 331

Query: 464 DVVRALNRLPELGITPD 480
             +    R+ + GITPD
Sbjct: 332 QAMAMYKRMLDTGITPD 348



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 143/310 (46%), Gaps = 5/310 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +  + +C   D+A  ++  MLD G+ PD  T++ +++      L  ++ +    M 
Sbjct: 317 YNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQ 376

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGN 285
              C P+ LT+ S++ AY     +     L +   +    I+P+A    TL+ +      
Sbjct: 377 DGMCKPNELTHCSLLHAYANGKEIGRMLALAEEICS--GVIEPHAVLLKTLVLVNSKCDL 434

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                  + E+K  G  P++ T N ++   GR +   +   I   M ++G +P+  TY S
Sbjct: 435 LLEAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNS 494

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  + ++   E +  V +E+  KG++  +  YNT++      G   EA  IF +M+ S 
Sbjct: 495 LMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRES- 553

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              PD  T+++ +   +      EA  +   M++ G +PN     S+I  Y K  R DD 
Sbjct: 554 GLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDA 613

Query: 466 VRALNRLPEL 475
           ++ ++ L EL
Sbjct: 614 IKFISSLHEL 623



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 150/318 (47%), Gaps = 3/318 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ +N  + VF +     +   +F +M   G  P+  T++TLIS        ++A+  +
Sbjct: 278 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMY 337

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           +RM   G  PD  TY++++ A  R G  E +  +    ++   + +     +L+  Y   
Sbjct: 338 KRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANG 397

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                 L + EE+ +  ++P+ +    L+    +     + +  + E+   G SP+ +T 
Sbjct: 398 KEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTL 457

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +++  YGR +    T  +   MKE G   S+  YN+L+ M +     + + E+ +++  
Sbjct: 458 NAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEI-L 516

Query: 404 SENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           ++  +PD  +++++I    CR G++ EA  +F+EM E+G  P++    + +  Y      
Sbjct: 517 AKGIKPDIISYNTVI-FAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMF 575

Query: 463 DDVVRALNRLPELGITPD 480
           ++ +  +  + + G  P+
Sbjct: 576 EEAIDVVCYMIKHGCKPN 593



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 133/313 (42%), Gaps = 36/313 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N  +K+        +  ++F+++      PD VT++TL++    N + ++    F+ M 
Sbjct: 247 FNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 306

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P+  TY+++I AY R G+ + A  +Y R                           
Sbjct: 307 RVGFVPERDTYNTLISAYSRCGSFDQAMAMYKR--------------------------- 339

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
                   M   G+ P++ TYN +L  + R     Q + I  EM D    PN  T+ SLL
Sbjct: 340 --------MLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLL 391

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            AY   +     L++  E+    ++    L  TL+ + +      EA   F ++K  +  
Sbjct: 392 HAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELK-RKGF 450

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD  T ++MI I   R  V++   + N M E+GF P+L    SL+  + +++  +    
Sbjct: 451 SPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEE 510

Query: 468 ALNRLPELGITPD 480
            L  +   GI PD
Sbjct: 511 VLKEILAKGIKPD 523



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 2/226 (0%)

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           + +I + G  G      ++   +   G +P++  Y +L+       R  +   ++K+M +
Sbjct: 2   AVIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEE 61

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
            G  P   TY  +L  YG+     + ++ ++  MK  G+      YNTL+  C      +
Sbjct: 62  EGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYE 121

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           EA  +FEDMKS     PD  T+++++ +     ++ EA  +  EM   G  P++    SL
Sbjct: 122 EAAAVFEDMKSM-GFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSL 180

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
           I  Y +    ++ +   N++ E GI  D      +L+   +T K+E
Sbjct: 181 ISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDE 226



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 90/203 (44%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           +L    + V  KC  L +AER F ++  +G  PD  T + +I+      +  K  E    
Sbjct: 420 VLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNF 479

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P   TY+S++  + ++ N E +  +      +  + D  +++T+I  Y   G 
Sbjct: 480 MKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGR 539

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                +++ EM+  G+ P++ITYN  + +        +   +   M  +G  PN NTY S
Sbjct: 540 MKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNS 599

Query: 346 LLRAYGRARYGEDTLSVYREMKE 368
           ++  Y +    +D +     + E
Sbjct: 600 VIDGYCKLNRRDDAIKFISSLHE 622



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 164 EVILYNVTMKVFRKCRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           ++I YN    +F  CR+  + +A  +F +M + G+ PD +T++T ++    +++  +A++
Sbjct: 523 DIISYNTV--IFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAID 580

Query: 222 WFERMPSFGCDPDALTYSSMIDAY 245
               M   GC P+  TY+S+ID Y
Sbjct: 581 VVCYMIKHGCKPNQNTYNSVIDGY 604


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 166/356 (46%), Gaps = 39/356 (10%)

Query: 151 ALTYFTNKLKASKE--VILYNVTMKVF-RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AL +F    +A  +  ++ YNV + ++ +K R  +    LF++M  +G++PD  T++T I
Sbjct: 136 ALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAI 195

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +     +L  +A E F +M S  C PD +TY++++D                        
Sbjct: 196 TACASGSLCEEATELFTQMKSSNCTPDRVTYNALLD------------------------ 231

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                      +YG AG ++   NV +EM++ G  PN++TYN LL   GRA        +
Sbjct: 232 -----------VYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEM 280

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
              M   G+ P+  TY SLL AY RA   E  + +Y +M+      +   +N L+ M   
Sbjct: 281 KDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGK 340

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
                E   IFEDM++    +PD  T++S++      G  SE   +F  M +AGFEP+  
Sbjct: 341 NKNFSEMMVIFEDMQAC-GVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKA 399

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 503
               LI+ YG+   +D  +   + + + G TPD      LL  + +  + E  +L+
Sbjct: 400 TFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELI 455



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 164/360 (45%), Gaps = 36/360 (10%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  + V+ K    ++A  +  +M   G  P+ VT++ L+S      L N A E  + 
Sbjct: 224 VTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDS 283

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S G +PD  TY+S++ AY RAG VE A  +Y++ R      +   F+ LI ++G   N
Sbjct: 284 MVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKN 343

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F   + ++E+M+A GV+P+++T+N+LL   G+     +V  +++ M   G  P+  T+  
Sbjct: 344 FSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNI 403

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ AYGR    +  LS+Y  M + G    +  +NTLLA  A  G  + A  I +++  S 
Sbjct: 404 LIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRS- 462

Query: 406 NCQPDSWTFSSMITICSCRGK-----------------------------------VSEA 430
           + +P+   ++SM+   +  G+                                   V EA
Sbjct: 463 SYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEA 522

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
           E  F  M   G+  +     ++I  YGK    D        L   G+ PD     CL+ +
Sbjct: 523 EDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGM 582



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 153/312 (49%), Gaps = 2/312 (0%)

Query: 170 VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
           V +++  +   L    RLF  + + G   D   +++LIS    N    +A+ +FE+M   
Sbjct: 87  VMLRILGRESQLTTVSRLFKSLREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEA 146

Query: 230 GCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
           G  P  +TY+ +ID YG+ G   E    L++  + +  + D   ++T I    +    + 
Sbjct: 147 GPQPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEE 206

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
              ++ +MK+    P+ +TYN LLD  G+A    +   + KEM   G  PN  TY  LL 
Sbjct: 207 ATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLS 266

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A+GRA        +   M  KG++  V  Y +LL+  +  G  ++A EI+  M++S NC 
Sbjct: 267 AFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTS-NCT 325

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           P+S+TF+++I +       SE   +F +M   G EP++    SL+  +GK     +V++ 
Sbjct: 326 PNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKV 385

Query: 469 LNRLPELGITPD 480
              + + G  PD
Sbjct: 386 FRGMKKAGFEPD 397



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 161/367 (43%), Gaps = 44/367 (11%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y   +  + +   +++A  +++ M      P++ TF+ LI     N   ++ +  F
Sbjct: 292 DVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIF 351

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M + G +PD +T++S++ A+G+ G       ++   +   +  D   F+ LI+ YG  
Sbjct: 352 EDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRC 411

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+ D  L++Y+ M   G  P++ T+N LL  + R  R    + I  E+  +   PN   Y
Sbjct: 412 GSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAY 471

Query: 344 ASLLRAYGRARYGE--------DTLS----------------VYRE-------------M 366
           AS+L AY  A  GE        DTL                 VY +             M
Sbjct: 472 ASMLHAY--ANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAM 529

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           +  G     + +N +++M    G  D+A + F  ++S+   +PD  T++ ++ +    G 
Sbjct: 530 RHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRST-GLEPDVVTYNCLMGMYGREGM 588

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----DR 482
             + EA   E + AG  P+L    ++I  Y K  +     R  + +   GI PD    + 
Sbjct: 589 YRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNT 648

Query: 483 FCGCLLN 489
           F GC +N
Sbjct: 649 FVGCYVN 655



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 132/266 (49%), Gaps = 3/266 (1%)

Query: 217 NKAVEWFERM-PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
           NKA+E F  M  S    PD +T + M+   GR   +     L+   R E + +D  A+++
Sbjct: 63  NKALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLREEGYPLDVYAYTS 122

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDN 334
           LI        F   L  +E+MK  G +P+++TYN ++D  G+  R W+ +  +++EM   
Sbjct: 123 LISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQ 182

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G+ P+  TY + + A       E+   ++ +MK          YN LL +    G+ +EA
Sbjct: 183 GIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEA 242

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
             + ++M+S+  C P+  T++ +++     G  + A  M + M+  G EP++F  TSL+ 
Sbjct: 243 ANVLKEMESA-GCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLS 301

Query: 455 CYGKAQRTDDVVRALNRLPELGITPD 480
            Y +A + +  +   N++     TP+
Sbjct: 302 AYSRAGKVEQAMEIYNQMRTSNCTPN 327



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 105/208 (50%), Gaps = 3/208 (1%)

Query: 275 TLIKLYGTAGNFDGCLNVYEEMK-AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           +++K  G  G ++  L V+  M+ ++  +P+ +T   +L  +GR  +   V  ++K + +
Sbjct: 51  SIMKGLGREGQWNKALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLRE 110

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT-D 392
            G   +   Y SL+ A  R R  ++ L  + +MKE G Q S+  YN ++ +    G + +
Sbjct: 111 EGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWE 170

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
              E+FE+MK+ +  QPD +T+++ IT C+      EA  +F +M  +   P+     +L
Sbjct: 171 NILELFEEMKA-QGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNAL 229

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  YGKA   ++    L  +   G  P+
Sbjct: 230 LDVYGKAGWYNEAANVLKEMESAGCLPN 257



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 106/240 (44%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I Y   +  +    +L+K + + D +    V    +   T +      +L ++A + F  
Sbjct: 469 IAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLA 528

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G   D  T+++MI  YG+ G ++ A   +   R+     D   ++ L+ +YG  G 
Sbjct: 529 MRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGM 588

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           +  C     E  A G  P++++YN ++ +  +  +      I+ EM  NG+ P+  TY +
Sbjct: 589 YRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNT 648

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
            +  Y       + LSV + M + G +     Y TL+     +G  +E   I + +KSS+
Sbjct: 649 FVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAYCKIGKFEEVERILKFIKSSD 708



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 2/137 (1%)

Query: 118 DVFSVLRCLG--DDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVF 175
           D F++LR  G   D +  +C++ +           A          + +++ YN  +  +
Sbjct: 559 DTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSY 618

Query: 176 RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
            K   L  A R+F +M+  G++PD+ T++T + C     +  +A+   + M   GC PD 
Sbjct: 619 SKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDE 678

Query: 236 LTYSSMIDAYGRAGNVE 252
           +TY +++DAY + G  E
Sbjct: 679 VTYRTLVDAYCKIGKFE 695



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 52/124 (41%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  M ++ +     K E    + +  G  PD V+++T+I     +   + A   F
Sbjct: 572 DVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIF 631

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M S G  PD+ TY++ +  Y   G    A  +         + D   + TL+  Y   
Sbjct: 632 HEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAYCKI 691

Query: 284 GNFD 287
           G F+
Sbjct: 692 GKFE 695


>gi|414868449|tpg|DAA47006.1| TPA: hypothetical protein ZEAMMB73_127498 [Zea mays]
          Length = 870

 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 122/539 (22%), Positives = 241/539 (44%), Gaps = 34/539 (6%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI----SCARMNNLPNKAVEWF 223
           +N  +    +   L+ A  +FD+M+  G   D  T++T +     C  M      A++  
Sbjct: 318 FNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCGNMG----LALQVV 373

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M +    P+ +TYS+++D + +    + A  L ++ ++ + ++D   ++TL+ +Y   
Sbjct: 374 LDMEANNAKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLRIQLDRVCYNTLLAIYVKT 433

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G +D    V EEM+ +G++ + +TYN+L++  G+  R   V  + ++M   G++P+  TY
Sbjct: 434 GKYDEIATVCEEMEKLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTY 493

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           ++L+  Y +A    D  +VY + KE G++  V L+++ +   A  G  + A  + ++M  
Sbjct: 494 STLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECALSLLDEMMK 553

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               +P+  T++++I         +E ++   +M   G      V  +     G    TD
Sbjct: 554 M-GIKPNVVTYNTIIDAFGKSKIFTEEDSDIGDMGIVGVYGGQVVRVTNPVIRGGRSATD 612

Query: 464 DVVRA----------LNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK-SNS 511
             +R             ++ + G+ P+      +LN  ++    E+   L+E +    NS
Sbjct: 613 VRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSRCNSFEDAALLLEQLRLFDNS 672

Query: 512 KLGYVVKLLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACK 568
             G    LL+  ++       +A  LFN + +       A+ N L D+  +    + A +
Sbjct: 673 VYGVAYGLLMGHREAW----SQARSLFNQLGRMDSPTSSAFYNALTDVLWHFGQRQGAQQ 728

Query: 569 LLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLG 628
           ++  G+   V+ +        + L L  +S GAA   +H W+ ++   +  G   P  L 
Sbjct: 729 VVLEGVNRRVWENTWG----DFCLDLHLMSCGAAQAMVHAWLLNVRSIVFEGRAMPEFLS 784

Query: 629 INTGHGKHK--YSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSL 685
           I TG GKH        L  V E+ L  + APF      +G F++  A   +WL    ++
Sbjct: 785 ILTGWGKHSKVAGSSTLRRVIEALLLSIGAPFQAERFNIGRFVSPSALVSAWLRESGTI 843



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 160/380 (42%), Gaps = 14/380 (3%)

Query: 133 QDCVIILNNMTNPDTAAL-ALTYFTNKL-----KASKEVILYNVTMKVFRKCRDLDKAER 186
           +D   IL  + + D +AL A   F   L      A  +  L    +    K    D A R
Sbjct: 171 EDYCQILRGLGDRDKSALRAFEVFYAALPLVGGGAVDKGKLLTAAIGALGKMGRPDLARR 230

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
            FD  +           S LIS    + L  +A+   E M   G  P  ++Y+++IDA G
Sbjct: 231 AFDTGIAGSYGNTVFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACG 290

Query: 247 RAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
           + G ++    G + +   +    D   F++L+     AG+ +    V++EM  +G   ++
Sbjct: 291 KGGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDI 350

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
            TYN  +D + +         +  +M  N   PN  TY++L+  + +    ++ L +  +
Sbjct: 351 YTYNTFVDAICKCGNMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDEALKLREK 410

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           MK   +QL    YNTLLA+    G  DE   + E+M+     + D+ T++S+I     +G
Sbjct: 411 MKSLRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKL-GIEKDTVTYNSLINGYGKQG 469

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 485
           ++     +  +M   G  P++   ++LI  Y KA    D         E G+  D     
Sbjct: 470 RLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFS 529

Query: 486 CLLNVMTQTPKEELGKLVEC 505
             ++ + +        LVEC
Sbjct: 530 SFIDTLAKN------GLVEC 543



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 160/338 (47%), Gaps = 20/338 (5%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L      L+   + + YN  + ++ K    D+   + ++M   G++ D VT+++LI+
Sbjct: 404 ALKLREKMKSLRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLIN 463

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   +      + M + G  P  LTYS++ID Y +AG    AF +Y   +    + 
Sbjct: 464 GYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKA 523

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   FS+ I      G  +  L++ +EM  +G+KPN++TYN ++D  G++K   +  +  
Sbjct: 524 DVVLFSSFIDTLAKNGLVECALSLLDEMMKMGIKPNVVTYNTIIDAFGKSKIFTEEDSDI 583

Query: 329 KEMTDNGLSPNWNTYAS--LLRAYGRA------RYGED---TLSVYREMKEKGMQLSVTL 377
            +M   G+        +  ++R  GR+      R  ++    L ++++M ++G++ +V  
Sbjct: 584 GDMGIVGVYGGQVVRVTNPVIRG-GRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVT 642

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           ++ +L  C+     ++A  + E ++  +N    S    +   +   R   S+A ++FN++
Sbjct: 643 FSAILNACSRCNSFEDAALLLEQLRLFDN----SVYGVAYGLLMGHREAWSQARSLFNQL 698

Query: 438 --LEAGFEPNLF-VLTSLIQCYGKAQRTDDVV-RALNR 471
             +++      +  LT ++  +G+ Q    VV   +NR
Sbjct: 699 GRMDSPTSSAFYNALTDVLWHFGQRQGAQQVVLEGVNR 736


>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
           sulphuraria]
          Length = 821

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 161/320 (50%), Gaps = 7/320 (2%)

Query: 166 ILYNVTMKVFRKCRDLD-----KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           + YN  +K+  +C+  D     +A  L  +M  +G  PD VT++TLI        P +A+
Sbjct: 384 VTYNAVIKIVSRCKRNDCGGITRAMSLLREMATKGCIPDVVTYATLIDAFSKRMEPERAL 443

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           + F+ M      P+   YSS+I A+ RAG VE A  +++   +E+   D  AF+ LI  +
Sbjct: 444 KLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGF 503

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD-NGLSPN 339
           G     D    +Y+ M+ + ++P+ IT+N L+   G+AK   +      +MT+  GL+P+
Sbjct: 504 GKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGKAKNSIRALEAMGDMTEIYGLTPD 563

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
            ++Y +L+ A G++        V+ EM+ KG++     +N L+   +       +F+I  
Sbjct: 564 RHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALIYGASRSHDLAASFKIV- 622

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           D+   E   PD++T +++I+ C+ R  +S A  +  +  + G  P+     + I   GK 
Sbjct: 623 DLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFNTFIDAVGKL 682

Query: 460 QRTDDVVRALNRLPELGITP 479
             ++ +   L+ +   GI+P
Sbjct: 683 DSSEKMFELLSEMESRGISP 702



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 161/378 (42%), Gaps = 41/378 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y   +  F K  + ++A +LF +M +  VKP+N  +S+LIS         +A+  F
Sbjct: 422 DVVTYATLIDAFSKRMEPERALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAIF 481

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN------------ 271
           E M      PD   ++++ID +G+   V+ AF +YDR R  K +I P+            
Sbjct: 482 EEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMR--KLQIQPDRITFNALISASG 539

Query: 272 --------------------------AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
                                     +++ LI   G +G+F     V+EEM+  G++P  
Sbjct: 540 KAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCT 599

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           +T+N L+    R+        I   M   GL+P+  T  +L+ A  R +       V  +
Sbjct: 600 VTFNALIYGASRSHDLAASFKIVDLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLEK 659

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
            K+ G+      +NT +     +  +++ FE+  +M+S     P   T ++++  C  RG
Sbjct: 660 FKQLGVHPDNVTFNTFIDAVGKLDSSEKMFELLSEMES-RGISPSKVTLNTIVGCCGRRG 718

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 485
           K+   E  F+   E   EP+    + LI+ Y      D  V A +      +  +     
Sbjct: 719 KIDLMERGFHMFHEKRLEPDSVTFSLLIENYVSHHLLDKAVIAYHNCKRQQLELNSNVVM 778

Query: 486 CLLNVMTQTPKEELGKLV 503
            LL  + +  + E+ KL+
Sbjct: 779 HLLESLIRKDEIEVAKLI 796



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 152/313 (48%), Gaps = 15/313 (4%)

Query: 196 VKPDNVTFSTLIS----CARMN-NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           + P+ VT++ +I     C R +     +A+     M + GC PD +TY+++IDA+ +   
Sbjct: 379 IAPNTVTYNAVIKIVSRCKRNDCGGITRAMSLLREMATKGCIPDVVTYATLIDAFSKRME 438

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
            E A  L+   +    + +   +S+LI  +  AG  +  L ++EEM    + P++  +N 
Sbjct: 439 PERALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNA 498

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-K 369
           L+D  G+ ++  +   IY  M    + P+  T+ +L+ A G+A+     L    +M E  
Sbjct: 499 LIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGKAKNSIRALEAMGDMTEIY 558

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G+      YN L+  C   G   +A+E+FE+M++ +  +P + TF+++I   S    ++ 
Sbjct: 559 GLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRT-KGIRPCTVTFNALIYGASRSHDLAA 617

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           +  + + ML+ G  P+ + + +LI    + Q        L +  +LG+ PD        N
Sbjct: 618 SFKIVDLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLEKFKQLGVHPD--------N 669

Query: 490 VMTQTPKEELGKL 502
           V   T  + +GKL
Sbjct: 670 VTFNTFIDAVGKL 682



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 164/366 (44%), Gaps = 16/366 (4%)

Query: 152 LTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
           L+  +N++K  ++V  +++ +    +     +AER    M +  ++P+  T+S LI    
Sbjct: 301 LSMPSNEVK--RDVASWSIYITALGRLERYSEAERSLIWMREEHIQPNIYTYSALIETLG 358

Query: 212 MNNLPNKAVEWFERMPSF-GCDPDALTYSSMIDAYGRA-----GNVEMAFGLYDRARNEK 265
              L  +A+  F RM       P+ +TY+++I    R      G +  A  L      + 
Sbjct: 359 KGGLCVRALSQFRRMSRIDNIAPNTVTYNAVIKIVSRCKRNDCGGITRAMSLLREMATKG 418

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
              D   ++TLI  +      +  L +++EMK   VKPN   Y++L+    RA    +  
Sbjct: 419 CIPDVVTYATLIDAFSKRMEPERALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERAL 478

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            I++EMT   + P+   + +L+  +G+ R  +    +Y  M++  +Q     +N L++  
Sbjct: 479 AIFEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISAS 538

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
                +  A E   DM       PD  +++++I  C   G  ++A  +F EM   G  P 
Sbjct: 539 GKAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPC 598

Query: 446 LFVLTSLIQCYGKAQRTDDVV---RALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 502
                +LI  YG A R+ D+    + ++ + + G+ PD      L++   +  +++L   
Sbjct: 599 TVTFNALI--YG-ASRSHDLAASFKIVDLMLQEGLNPDAYTMNTLISACNR--RQDLSTA 653

Query: 503 VECVEK 508
            E +EK
Sbjct: 654 FEVLEK 659



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 164/360 (45%), Gaps = 28/360 (7%)

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           +DA  + G       ++    + + + D  ++S  I   G    +         M+   +
Sbjct: 284 MDALLKGGKARECLDMFLSMPSNEVKRDVASWSIYITALGRLERYSEAERSLIWMREEHI 343

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGE--- 357
           +PN+ TY+ L++T+G+     +  + ++ M+  + ++PN  TY ++++   R +  +   
Sbjct: 344 QPNIYTYSALIETLGKGGLCVRALSQFRRMSRIDNIAPNTVTYNAVIKIVSRCKRNDCGG 403

Query: 358 --DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
               +S+ REM  KG    V  Y TL+   +     + A ++F++MK + N +P+++ +S
Sbjct: 404 ITRAMSLLREMATKGCIPDVVTYATLIDAFSKRMEPERALKLFQEMKEA-NVKPNNYCYS 462

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           S+I+     G V  A A+F EM      P++F   +LI  +GK ++ D      +R+ +L
Sbjct: 463 SLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKL 522

Query: 476 GITPDDRFCGCLLNVMTQTPK-----EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDF 530
            I PD      L++   +        E +G + E    +  +  Y    L++     GDF
Sbjct: 523 QIQPDRITFNALISASGKAKNSIRALEAMGDMTEIYGLTPDRHSY--NALIDACGKSGDF 580

Query: 531 KKEATELFNSI-SKDVKKAYC--NCLI-------DLCVNLNLLENACKLLELGLTLEVYT 580
            K A E+F  + +K ++      N LI       DL  +  +++    +L+ GL  + YT
Sbjct: 581 TK-AYEVFEEMRTKGIRPCTVTFNALIYGASRSHDLAASFKIVD---LMLQEGLNPDAYT 636



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 126/309 (40%), Gaps = 78/309 (25%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALA+       +   +V  +N  +  F K R +DKA  ++D M    ++PD +TF+ LIS
Sbjct: 477 ALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALIS 536

Query: 209 CARMNNLPNKAVEWFERMPS-FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
            +       +A+E    M   +G  PD  +Y+++IDA G++G+   A+ +++  R +  R
Sbjct: 537 ASGKAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIR 596

Query: 268 ---------------------------------IDPNAFS--TLIKLYGTAGNFDGCLNV 292
                                            ++P+A++  TLI       +      V
Sbjct: 597 PCTVTFNALIYGASRSHDLAASFKIVDLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEV 656

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
            E+ K +GV P+ +T+N  +D +G+     ++  +  EM   G+SP+             
Sbjct: 657 LEKFKQLGVHPDNVTFNTFIDAVGKLDSSEKMFELLSEMESRGISPS------------- 703

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD---EAFEIFEDMKSSENCQP 409
                                 VTL NT++  C   G  D     F +F + +     +P
Sbjct: 704 ---------------------KVTL-NTIVGCCGRRGKIDLMERGFHMFHEKR----LEP 737

Query: 410 DSWTFSSMI 418
           DS TFS +I
Sbjct: 738 DSVTFSLLI 746



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 6/165 (3%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +    + +DL  A  + +     GV PDNVTF+T I      +   K  E    M S
Sbjct: 638 NTLISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFNTFIDAVGKLDSSEKMFELLSEMES 697

Query: 229 FGCDPDALTYSSMIDAYGRAGNV---EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
            G  P  +T ++++   GR G +   E  F ++   R E    D   FS LI+ Y +   
Sbjct: 698 RGISPSKVTLNTIVGCCGRRGKIDLMERGFHMFHEKRLEP---DSVTFSLLIENYVSHHL 754

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
            D  +  Y   K   ++ N     +LL+++ R       K I K+
Sbjct: 755 LDKAVIAYHNCKRQQLELNSNVVMHLLESLIRKDEIEVAKLILKD 799


>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 859

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/483 (24%), Positives = 209/483 (43%), Gaps = 18/483 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  ++ F K   L+K   L  +M   G  PD  +++ L+          +A++ F +M 
Sbjct: 280 YSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQ 339

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + GC  +A TYS +++ YG+ G  +    ++   +      D   ++ LI+++G  G F 
Sbjct: 340 AAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFK 399

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + ++ +M    V+PNM TY  L+   G+       K I   M + G+ P+   Y  ++
Sbjct: 400 EVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVI 459

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A+G+A   E+ L V+  M E G   +V  YN+ +   A  G   EA  I   M  S   
Sbjct: 460 EAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNES-GL 518

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           + D  +F+ +I      G+  EA   + EM +A  EPN   L  ++  Y  A   D+   
Sbjct: 519 KRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEE 578

Query: 468 ALNRLPELGITPDDRFCGCLLNVM---TQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQ 524
               +   GI P    C CL+  +        +    + E +    S +   +      Q
Sbjct: 579 QFQEIKASGILPS-VMCYCLMLALYAKNDRLNDAYNLIDEMITMRVSDIHQGIG-----Q 632

Query: 525 DIEGDFKKEAT--------ELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 576
            I+GDF  E+         +  NS    +   + N L++    +   E A ++L      
Sbjct: 633 MIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLEALWWMFQRERAARVLNEASKR 692

Query: 577 EVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKH 636
            ++ ++  +S   WS+ +  +S G ALTAL +W+N++ +   +G + P L  +    G  
Sbjct: 693 GLFPELFRKSKLVWSVDVHRMSEGGALTALSVWLNNMHEMSRTGNDLPELATVVVVRGHM 752

Query: 637 KYS 639
           + S
Sbjct: 753 EKS 755



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 181/391 (46%), Gaps = 49/391 (12%)

Query: 134 DCVIILNNMTN-PDTAALA--LTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDD 190
           D   ++N +T  P   ++A  L  F NKL  +     + +  K F +  D  ++ RLF  
Sbjct: 70  DVETLINRITALPPRGSIARCLDPFKNKLSLND----FALVFKEFAQRGDWQRSLRLFKY 125

Query: 191 MLDRGV--KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
           M  R +  KP+   ++ +I+      L +K  E F+ MPS G       Y+++I+AYGR 
Sbjct: 126 M-QRQIWCKPNEHIYTIMITLLGREGLLDKCREVFDEMPSNGVARTVYVYTAVINAYGRN 184

Query: 249 GNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNM 305
           G    +  L +  + E  R+ P+   ++T+I      G +++G L ++ EM+  G++P++
Sbjct: 185 GQFHASLELLNGMKQE--RVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDV 242

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           ITYN LL          + + +++ M ++G+ P+ NTY+ L++ +G+    E    + RE
Sbjct: 243 ITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLRE 302

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS--------------------- 404
           M+  G    +T YN LL   A++G   EA ++F  M+++                     
Sbjct: 303 MESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGR 362

Query: 405 -------------ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
                         N  PD+ T++ +I +    G   E   +F++M+E   EPN+     
Sbjct: 363 YDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEG 422

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           LI   GK    +D  + L  + E GI P  +
Sbjct: 423 LIFACGKGGLYEDAKKILLHMNEKGIVPSSK 453



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/252 (19%), Positives = 97/252 (38%), Gaps = 15/252 (5%)

Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD 180
            V+   G   L ++ +++ N M              N++ ++  V  YN  +  F +   
Sbjct: 457 GVIEAFGQAALYEEALVVFNTM--------------NEVGSNPTVETYNSFIHAFARGGL 502

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
             +AE +   M + G+K D  +F+ +I   R      +AV+ +  M    C+P+ LT   
Sbjct: 503 YKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEV 562

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           ++  Y  AG V+ +   +   +          +  ++ LY      +   N+ +EM  + 
Sbjct: 563 VLSVYCSAGLVDESEEQFQEIKASGILPSVMCYCLMLALYAKNDRLNDAYNLIDEMITMR 622

Query: 301 VKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           V         ++      +  WQ V+ ++ ++   G       Y +LL A       E  
Sbjct: 623 VSDIHQGIGQMIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLEALWWMFQRERA 682

Query: 360 LSVYREMKEKGM 371
             V  E  ++G+
Sbjct: 683 ARVLNEASKRGL 694


>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
 gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
          Length = 1365

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/553 (20%), Positives = 236/553 (42%), Gaps = 46/553 (8%)

Query: 168  YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
            Y+  +  + +  + ++A R  D+M+  G++P+    + ++          +  E+F+R+P
Sbjct: 684  YSALLSAYAETGNFERATRALDNMVAAGLQPNATCANYVLEAFGRAGKAKEISEFFQRLP 743

Query: 228  SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW--------------------- 266
              G  P++ T+  +  A+ R GN+E A  +Y + +   +                     
Sbjct: 744  EMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSRETVEI 803

Query: 267  --------------RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
                           +D + ++ +I LY   G++     V++ M+ IG  P+  T+N L+
Sbjct: 804  DAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLI 863

Query: 313  DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                R +   + + + +EM   G +PN +TY +L+ AYGR +  ED   V++ + E G +
Sbjct: 864  MLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCK 923

Query: 373  LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
               T YN ++ +    G   +  EI E MK  +  +P   T   ++      G   +AE 
Sbjct: 924  PDATAYNVMINVYRKAGEHRKIEEIIEQMK-VDGFEPSLTTIHMLMDSYGKGGATGKAEE 982

Query: 433  MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            +   + E G  P+    TS+I  +   +     V  L ++ +  + P      C +   +
Sbjct: 983  VLETLPEIGMSPDAIHYTSIINSHLNNKDYLSAVIWLRKMTDACVRPTHVTITCFVGAAS 1042

Query: 493  QTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKA---Y 549
               +     +   + K+ S+ G+ + L L   +      ++  ++F+ + +   +A    
Sbjct: 1043 VCERSSHALM---LLKALSEAGFSLPLRL-MTECTPKVVQDMQDIFDQLQESGPEACQGV 1098

Query: 550  CNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQ-WSLHLKSLSLGAALTALHI 608
             N L+DL         A  +  + +   +YT + +R   + W    + LS GA+L AL +
Sbjct: 1099 VNVLMDLLWAFRQCATAALVFAVAIESNIYTQVLARVKDRNWGADFRRLSPGASLVALIL 1158

Query: 609  WINDLSKALESGEEFPPLLGINTGHGKHKYSDKG-LASVFESHLKELNAPFHDSPDKVGW 667
            W++ +  A   G   PP   I    G  K +++  + +  ++HL ++ +PF  S  + G 
Sbjct: 1159 WLDQMQDASLQGSPVPP-KSIQIDIGSSKLNNQASVRNTIKAHLWQMGSPFLPSKTRAGV 1217

Query: 668  FLTTEAAAKSWLE 680
             +    A   WL+
Sbjct: 1218 LVAKSHALCMWLK 1230



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 150/331 (45%), Gaps = 37/331 (11%)

Query: 164 EVILYNVTMKV-FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
           +++ +N+ +K   R       A  L  D+   G++PD +T++TLIS   +NN  + A+  
Sbjct: 159 DLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILI 218

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           FE M   GCDPD  TY++MI  YGRAG VE A  ++        RI              
Sbjct: 219 FEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIF--------RI-------------- 256

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
                        M+  G  P+ +TYN++L    R  R  +V+ I   M D   S +  T
Sbjct: 257 -------------MQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEIT 303

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +++  YG+A        +Y +MKE+G       +  L+      G+ +EA  +FEDM 
Sbjct: 304 YNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDML 363

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            S+  +P    FS+MI   +     ++AE  ++ ML AG  P+L   + ++  + KA   
Sbjct: 364 KSQ-VRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAGMP 422

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           +  +     +   G+ P+      ++ V  Q
Sbjct: 423 EKCIILYKAMVGSGLKPELSVYAIMVRVFYQ 453



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 164/363 (45%), Gaps = 40/363 (11%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF-ERMPSFGCDPDALTYSS 240
           D+A   F DM   G++ D     T + C         A E   + + +F    D+  + +
Sbjct: 593 DEALARFLDMTTEGLEMDAEVLQTAVMCYCRKGFAFVAHELLIDCLHAFDVK-DSAMHVA 651

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I +YG+    + A  ++   +   +  + +A+S L+  Y   GNF+      + M A G
Sbjct: 652 IIASYGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAG 711

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           ++PN    N +L+  GRA +  ++   ++ + + G+SPN  T+  +  A+ R    E+  
Sbjct: 712 LQPNATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEAR 771

Query: 361 SVYREMKE-----------------------------------KGMQLSVTLYNTLLAMC 385
           S+YR+MKE                                    G++L + +YN ++++ 
Sbjct: 772 SMYRQMKEAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLY 831

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
           + +G    A  +F+ M+    C PD+ TF+++I + S    V EA+A+  EM++ G  PN
Sbjct: 832 SKLGSYRNAALVFKGMQEI-GCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPN 890

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 505
           +   T+LI  YG+ Q  +D       + E G  PD      ++NV  +  +    K+ E 
Sbjct: 891 ISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHR--KIEEI 948

Query: 506 VEK 508
           +E+
Sbjct: 949 IEQ 951



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 132/328 (40%), Gaps = 71/328 (21%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDR-------------------ARNEKW------- 266
           P+    + M+   GRA    +A  L+DR                   AR+  W       
Sbjct: 89  PNPRMLAVMLSVLGRANQPGLAQELFDRAESSIGNCVQVYNSLMSVYARHGDWNSVQQLL 148

Query: 267 --------RIDPNAFSTLIKLYGTAGNFDGCL-NVYEEMKAIGVKPNMITYNNLLDTMGR 317
                   R D   F+ +IK     G  +G   ++ +++ A G++P+ ITYN L+     
Sbjct: 149 CRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISACSL 208

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL-SVT 376
             R      I++EM   G  P+  TY +++  YGRA   E   S++R M+E+G    +VT
Sbjct: 209 NNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVT 268

Query: 377 L----------------------------------YNTLLAMCADVGYTDEAFEIFEDMK 402
                                              YNT++ M    G   +A E++  MK
Sbjct: 269 YNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMK 328

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
               C PDS TF+ +I      G V+EA AMF +ML++   P L   +++I  Y KA   
Sbjct: 329 EEGRC-PDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMF 387

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNV 490
            D     + +   G+ PD      +L+V
Sbjct: 388 TDAEHTYSCMLRAGVRPDLLAYSVMLDV 415



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 91/187 (48%)

Query: 164  EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
            ++ +YN  + ++ K      A  +F  M + G  PD  TF+TLI     N +  +A    
Sbjct: 820  DIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALL 879

Query: 224  ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
              M   G  P+  TY+++I AYGR    E A  ++        + D  A++ +I +Y  A
Sbjct: 880  REMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKA 939

Query: 284  GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            G       + E+MK  G +P++ T + L+D+ G+     + + + + + + G+SP+   Y
Sbjct: 940  GEHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHY 999

Query: 344  ASLLRAY 350
             S++ ++
Sbjct: 1000 TSIINSH 1006



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 129/329 (39%), Gaps = 35/329 (10%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           + S + I YN  + ++ K     KAE L+  M + G  PD+VTF+ LI         N+A
Sbjct: 296 RCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEA 355

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              FE M      P    +S+MI AY +A     A   Y        R D  A+S ++ +
Sbjct: 356 AAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDV 415

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD------ 333
           +  AG  + C+ +Y+ M   G+KP +  Y  ++    +     +++ + KEM        
Sbjct: 416 FFKAGMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQKSSVAEIENLSKEMVQSSASLA 475

Query: 334 ------------------------NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
                                    G++    T   +L A+  +    D   +   +   
Sbjct: 476 ALSSTLAKGGFYAEAAVVLKISFAQGVAVKVETLNDVLGAFEASGKLSDARDLVHAVSSI 535

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCR-GKV 427
              ++  LY  L  M A  G   EA    E+M++S+   Q     F  ++     R G  
Sbjct: 536 EPSVAAHLYKRLAVMLAKAGRFSEA---EEEMRTSQTYGQVQVSDFLKVLVASYDRAGMQ 592

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
            EA A F +M   G E +  VL + + CY
Sbjct: 593 DEALARFLDMTTEGLEMDAEVLQTAVMCY 621



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 92/193 (47%), Gaps = 8/193 (4%)

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
           CLNV     A    PN      +L  +GRA +P   + ++ +  ++ +      Y SL+ 
Sbjct: 80  CLNV-----ARWYAPNPRMLAVMLSVLGRANQPGLAQELF-DRAESSIGNCVQVYNSLMS 133

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE-AFEIFEDMKSSENC 407
            Y R         +   M+++G +  +  +N ++      G  +  A  + +D+ ++   
Sbjct: 134 VYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAA-GL 192

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD+ T++++I+ CS   ++S+A  +F EM   G +P+++   ++I  YG+A R +    
Sbjct: 193 RPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASS 252

Query: 468 ALNRLPELGITPD 480
               + E G TPD
Sbjct: 253 IFRIMQEQGFTPD 265



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 83/475 (17%), Positives = 175/475 (36%), Gaps = 75/475 (15%)

Query: 151 ALTYFTNKLKASKEVIL--YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A   F + LK+     L  ++  +  + K      AE  +  ML  GV+PD + +S ++ 
Sbjct: 355 AAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLD 414

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV--------EMA------ 254
                 +P K +  ++ M   G  P+   Y+ M+  + +  +V        EM       
Sbjct: 415 VFFKAGMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQKSSVAEIENLSKEMVQSSASL 474

Query: 255 ---------FGLYDRAR-------NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
                     G Y  A         +   +     + ++  +  +G      ++   + +
Sbjct: 475 AALSSTLAKGGFYAEAAVVLKISFAQGVAVKVETLNDVLGAFEASGKLSDARDLVHAVSS 534

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
           I        Y  L   + +A R  + +   +     G     +    L+ +Y RA   ++
Sbjct: 535 IEPSVAAHLYKRLAVMLAKAGRFSEAEEEMRTSQTYGQVQVSDFLKVLVASYDRAGMQDE 594

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED------------------ 400
            L+ + +M  +G+++   +  T +      G+   A E+  D                  
Sbjct: 595 ALARFLDMTTEGLEMDAEVLQTAVMCYCRKGFAFVAHELLIDCLHAFDVKDSAMHVAIIA 654

Query: 401 ----MKSSENCQ------------PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
               +K  +N +             ++  +S++++  +  G    A    + M+ AG +P
Sbjct: 655 SYGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQP 714

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV- 503
           N      +++ +G+A +  ++     RLPE+GI+P+ R    + +  ++    E  + + 
Sbjct: 715 NATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMY 774

Query: 504 -ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL-FNSISKDVKKAYCNCLIDL 556
            +  E   S    V K LL        + +E  E+    + KD+KKA     ID+
Sbjct: 775 RQMKEAGFSPSIQVFKALL------ALYSRETVEIDAEELVKDIKKAGLELDIDI 823



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 115/314 (36%), Gaps = 45/314 (14%)

Query: 99   YNSLVKLAADLDSCSATEDDVFSVLRCLG--DDFLEQDCVIILNNMTNPDTAALALTYFT 156
            YN ++ L + L S       VF  ++ +G   D    + +I+L +       A AL    
Sbjct: 824  YNHMISLYSKLGSYR-NAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREM 882

Query: 157  NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
             K   +  +  Y   +  + + +  + AE +F  + + G KPD   ++ +I+  R     
Sbjct: 883  IKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEH 942

Query: 217  NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
             K  E  E+M   G +P   T   ++D+YG+ G    A                      
Sbjct: 943  RKIEEIIEQMKVDGFEPSLTTIHMLMDSYGKGGATGKA---------------------- 980

Query: 277  IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
                           V E +  IG+ P+ I Y +++++    K         ++MTD  +
Sbjct: 981  -------------EEVLETLPEIGMSPDAIHYTSIINSHLNNKDYLSAVIWLRKMTDACV 1027

Query: 337  SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
             P   T    + A          L + + + E G  L +     L+  C      D   +
Sbjct: 1028 RPTHVTITCFVGAASVCERSSHALMLLKALSEAGFSLPL----RLMTECTPKVVQDMQ-D 1082

Query: 397  IFEDMKSS--ENCQ 408
            IF+ ++ S  E CQ
Sbjct: 1083 IFDQLQESGPEACQ 1096


>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
 gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
          Length = 574

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/507 (23%), Positives = 224/507 (44%), Gaps = 35/507 (6%)

Query: 195 GVKPDNVTFSTLI-------SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
           G K D  T++T++       S   +NNL        + M   GC+P+ +TY+ +I  YGR
Sbjct: 62  GFKHDVHTYTTILGILGRAKSFDVLNNL-------LDEMIREGCEPNVVTYNRLIHCYGR 114

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
           A +++ +  L++  +      D   + TLI L   AG  D  + +Y +M+  G +P+  T
Sbjct: 115 ANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDTFT 174

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           Y+ ++  +G+A +      ++ EMTD G +P+  TY  ++  + +A   +  L +Y +++
Sbjct: 175 YSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQ 234

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
           E G       Y  ++ +  + G+ ++A ++FE+M+ +     D+  F  M+ +    G  
Sbjct: 235 EVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERA-GWVADNPIFGLMVDMWGKTGNA 293

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGC 486
            +A   FN ML++G +PN+    SL+  Y ++   D     L  + + G+ P    +   
Sbjct: 294 EKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTYTSL 353

Query: 487 LLNVMTQTPKEELGKLVECVEKSNSKLG-YVVKLLLEEQDIEGDFKKEATELFNSIS--- 542
           L +        E   L   +  +      +V  LL       G         F+++    
Sbjct: 354 LSSCAACRAAWEYDALFGLMGGTGHPAHPFVCSLLASGGTAGGTMVVGIRCFFDAMQFEE 413

Query: 543 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-------IQSRSPTQWSLHLK 595
            + ++ + + LID       L  A K +  G   EV  +       ++ ++P  WS++L 
Sbjct: 414 LESRRGFADSLID------FLHRAGKAVAAGSVWEVAAEKNLYPNAVREKAPQYWSINLH 467

Query: 596 SLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKG--LASVFESHLKE 653
            +S G AL AL   +   ++A+      P  + I TG G+         +    E  L+ 
Sbjct: 468 VMSTGTALVALARTLAMFAEAVVRTGAAPYRIDIITGWGRRSRVPGASLVKQAVEGMLRS 527

Query: 654 LNAPFHDSPDKVGWFLTTEAAAKSWLE 680
           LN+PFH     VG F+    A   WL+
Sbjct: 528 LNSPFHLDGLNVGCFVGQGPALAEWLK 554



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 115/257 (44%), Gaps = 35/257 (13%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +  + +  DLD + +LF+ M   G +PD VT+ TLI         + A+E + 
Sbjct: 102 VVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMELYR 161

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M   G  PD  TYS +I   G+AG +  A+ L+    +  +      ++ +I L+  AG
Sbjct: 162 QMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAG 221

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM------------- 331
            FD  L +Y +++ +G  P+ +TY  +++ +G        + +++EM             
Sbjct: 222 KFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFG 281

Query: 332 ----------------------TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
                                  D+GL PN     SLL AY R+ + +    V   M + 
Sbjct: 282 LMVDMWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKW 341

Query: 370 GMQLSVTLYNTLLAMCA 386
           G+  ++  Y +LL+ CA
Sbjct: 342 GLYPTLQTYTSLLSSCA 358



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 145/305 (47%), Gaps = 25/305 (8%)

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           K  G K ++ TY  +L  +GRAK    +  +  EM   G  PN  TY  L+  YGRA   
Sbjct: 59  KQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDL 118

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           + +L ++  M+  G +     Y TL+ + A  G+ D A E++  M+ +   +PD++T+S 
Sbjct: 119 DSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMELYRQMQHA-GFRPDTFTYSI 177

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I      GK++ A  +F EM + G+ P+L     +I  + KA + D  ++  + L E+G
Sbjct: 178 IIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVG 237

Query: 477 ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS-----NSKLGYVVKLLLEEQDIEGDF 530
             PD    G ++ V+      E+  ++ E +E++     N   G +V +  +  + E   
Sbjct: 238 YAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAE--- 294

Query: 531 KKEATELFN-----SISKDVKKAYCNCLIDLCVNLNLLENACKLL----ELGL--TLEVY 579
             +A + FN      +  +V    CN L+   +  +  + A  +L    + GL  TL+ Y
Sbjct: 295 --KAAQWFNRMLDSGLQPNVPA--CNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTY 350

Query: 580 TDIQS 584
           T + S
Sbjct: 351 TSLLS 355



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 1/192 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           +  ++ YN+ + +  K    D A +L+ D+ + G  PD VT+  ++           A +
Sbjct: 204 APSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQ 263

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            FE M   G   D   +  M+D +G+ GN E A   ++R  +   + +  A ++L+  Y 
Sbjct: 264 VFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYL 323

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            +  +D    V   M   G+ P + TY +LL +    +  W+   ++  M   G  P   
Sbjct: 324 RSSFYDAAGGVLGGMAKWGLYPTLQTYTSLLSSCAACRAAWEYDALFGLMGGTG-HPAHP 382

Query: 342 TYASLLRAYGRA 353
              SLL + G A
Sbjct: 383 FVCSLLASGGTA 394



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 39/87 (44%)

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A+  F   +     + D  T+++++ I            + +EM+  G EPN+     LI
Sbjct: 50  AYNFFIWARKQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLI 109

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPD 480
            CYG+A   D  ++  N +  +G  PD
Sbjct: 110 HCYGRANDLDSSLKLFNVMQMVGCEPD 136


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 187/379 (49%), Gaps = 13/379 (3%)

Query: 138 ILNNMTNPDTAALALTYFTN-KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV 196
           IL+ +   +  ALA+  F   +  A   V +YN  M V+ +    +K + L D M +RG 
Sbjct: 226 ILSVLGKANQEALAVEVFMRAEPSAGNTVQVYNAMMGVYARRGRFNKVQELLDLMRERGC 285

Query: 197 KPDNVTFSTLISCARMNN---LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           KPD V+F+TLI+ AR+     +PN A+E    +   G  PD +TY+++I A  RA N+E 
Sbjct: 286 KPDLVSFNTLIN-ARLKAGAMMPNLAIELLNEVRRSGLRPDTITYNTLISACSRASNLEE 344

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  ++D       + D   ++ +I +YG  G       ++ ++++ G  P+ ++YN+LL 
Sbjct: 345 AAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLY 404

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
              R     +VK I++EM   G   +  TY +++  YG+    E  L +YR+M+  G   
Sbjct: 405 AFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNP 464

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
               Y  L+          EA  +  +M ++   +P   T+S++I   +  GK  EAE  
Sbjct: 465 DAVTYTVLIDSLGKTNKIAEAAGVMSEMLNT-GVKPTLKTYSALICGYAKAGKPVEAEET 523

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCLLNV 490
           F+ ML +G  P+    + ++  +    R ++  RA+    E+   GIT D      +L  
Sbjct: 524 FDCMLRSGIRPDHLAYSVMLDIH---LRFNEPKRAMTLYKEMLHDGITLDHSLYELMLRT 580

Query: 491 MTQTPK-EELGKLVECVEK 508
           + +  K E++G+++  +E+
Sbjct: 581 LRKVNKVEDIGRVIRDMEE 599



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 145/315 (46%), Gaps = 40/315 (12%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I YN  +    +  +L++A ++FDDM     +PD  T++ +IS      L  KA + F
Sbjct: 325 DTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLF 384

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             + S G  PDA++Y+S++ A+ R GNVE    +++      +  D   ++T+I +YG  
Sbjct: 385 NDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQ 444

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +  L +Y +M++ G  P+ +TY  L+D++G+  +  +   +  EM + G+ P   TY
Sbjct: 445 GQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTY 504

Query: 344 ASLLRAYGRA---------------------------------RYGE--DTLSVYREMKE 368
           ++L+  Y +A                                 R+ E    +++Y+EM  
Sbjct: 505 SALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRFNEPKRAMTLYKEMLH 564

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G+ L  +LY  +L     V   ++   +  DM+  E C  ++ T SS++    C     
Sbjct: 565 DGITLDHSLYELMLRTLRKVNKVEDIGRVIRDME--EICGMNTQTISSILVKGEC---YD 619

Query: 429 EAEAMFNEMLEAGFE 443
           EA  M    +   FE
Sbjct: 620 EAAKMLRRAISDHFE 634



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 132/644 (20%), Positives = 257/644 (39%), Gaps = 90/644 (13%)

Query: 119  VFSVLRCLG---DDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVF 175
            VFS +R  G    + L +  V++   M  P+TA   + +  +       + LY   ++ +
Sbjct: 729  VFSDMRFCGIKASESLYESMVLLYCKMGFPETAHHLIDFAESDGILLNNISLYVNVIEAY 788

Query: 176  RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
             + +   KAE +  ++  R +  D   ++ LI     +    +A   F  M   G  P  
Sbjct: 789  GRLKLWQKAESVAGNLRQRCITVDRKVWNALIEAYAASGCYERARAIFNTMMRDGPSPTV 848

Query: 236  LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
             T + ++ A    G ++  + +    ++  ++I  ++   ++  +  AGN      +Y  
Sbjct: 849  DTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYHG 908

Query: 296  MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
            MKA G  P M  Y  +   + R K+   V+ +  EM + G  P+ + + S+L+ Y     
Sbjct: 909  MKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIED 968

Query: 356  GEDTLSVYREMKEKGMQLSVTLYNTLLAM-CAD----VGYT------------------- 391
               T+ VY+ +KE G++     YNTL+ M C D     G++                   
Sbjct: 969  FRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKS 1028

Query: 392  -----------DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
                       ++A E+FE+++S + C+ D   + +M+ I    G  S+AE +F+ M +A
Sbjct: 1029 LVASFGKQQLVEQAEELFEELQS-KGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDA 1087

Query: 441  GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG------------------------ 476
            G EP +  +  L+  YG + +  +  + L+ L E G                        
Sbjct: 1088 GVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAYLRNGDYNIG 1147

Query: 477  -----------ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQ 524
                       + PD R   C +   + + +  E   L+  ++ +   L   ++LL E+ 
Sbjct: 1148 IQKLIQMKKEGLEPDHRIWTCFIRAASLSRRTSEAIVLLNALQDAGFDLP--IRLLTEKP 1205

Query: 525  DIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQS 584
            +          E+  ++  +    + N L DL     L   A  + +L +   +Y     
Sbjct: 1206 ESLVSALDRCLEMLETLEDNAAFNFVNALEDLLWAFELRATASWVFQLAIKKRIYRHDVF 1265

Query: 585  RSPTQWSLHLKSLSLGAALTALHIWI----ND----LSKALESGEEFPPLLGINTGHGKH 636
            R   + +    S+S    +  L++ I    ND    L  +L+   E P  + + TG  + 
Sbjct: 1266 RHADKSNKWQSSMS---PIQMLNVTIQKENNDKKDLLDASLQGCPESPKSVVLITGTAE- 1321

Query: 637  KYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLE 680
             Y+   L S  ++ L E+ +PF     + G  +    + + WL+
Sbjct: 1322 -YNMVSLDSTLKACLWEMGSPFLPCKSRSGLLIAKAHSLRMWLK 1364



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 143/385 (37%), Gaps = 72/385 (18%)

Query: 177  KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
            K + LD A + + +  + G       F +LI C   N L  +A + F  M   G      
Sbjct: 684  KAQQLDAALKEYSNNRELGFTGSFTMFESLIQCCLENELITEASQVFSDMRFCGIKASES 743

Query: 237  TYSSMIDAYGRAGNVEMAFGLYDRA---------------------RNEKWR-------- 267
             Y SM+  Y + G  E A  L D A                     R + W+        
Sbjct: 744  LYESMVLLYCKMGFPETAHHLIDFAESDGILLNNISLYVNVIEAYGRLKLWQKAESVAGN 803

Query: 268  -------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL--------- 311
                   +D   ++ LI+ Y  +G ++    ++  M   G  P + T N L         
Sbjct: 804  LRQRCITVDRKVWNALIEAYAASGCYERARAIFNTMMRDGPSPTVDTINGLLQALIVDGR 863

Query: 312  --------------------------LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                                      LD   RA   ++VK IY  M   G  P  + Y  
Sbjct: 864  LDELYVVVQELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRV 923

Query: 346  LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
            + R   R +   D  ++  EM+E G +  ++++N++L M   +    +  ++++ +K  +
Sbjct: 924  MARLLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIK-ED 982

Query: 406  NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              +PD  T++++I +     +  E  ++ +EM  AG EP L    SL+  +GK Q  +  
Sbjct: 983  GLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQA 1042

Query: 466  VRALNRLPELGITPDDRFCGCLLNV 490
                  L   G   D  F   ++ +
Sbjct: 1043 EELFEELQSKGCKLDRSFYHTMMKI 1067



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 136/334 (40%), Gaps = 7/334 (2%)

Query: 126 LGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAE 185
            G D +  + +I +      +  AL L         + + + Y V +    K   + +A 
Sbjct: 427 FGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAA 486

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
            +  +ML+ GVKP   T+S LI        P +A E F+ M   G  PD L YS M+D +
Sbjct: 487 GVMSEMLNTGVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIH 546

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
            R    + A  LY    ++   +D + +  +++        +    V  +M+ I    N 
Sbjct: 547 LRFNEPKRAMTLYKEMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRDMEEI-CGMNT 605

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
            T +++L   G        K + + ++D+      N  + L       R+ E  L +   
Sbjct: 606 QTISSIL-VKGECYDE-AAKMLRRAISDHFEIDRENLLSILSSYSSSGRHAE-ALDLLEF 662

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT-FSSMITICSCR 424
           +KE   + S  +   L+ M       D A + + +  + E     S+T F S+I  C   
Sbjct: 663 LKEHSPRSSQMITEALVVMLCKAQQLDAALKEYSN--NRELGFTGSFTMFESLIQCCLEN 720

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
             ++EA  +F++M   G + +  +  S++  Y K
Sbjct: 721 ELITEASQVFSDMRFCGIKASESLYESMVLLYCK 754


>gi|302806226|ref|XP_002984863.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
 gi|300147449|gb|EFJ14113.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
          Length = 564

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/507 (24%), Positives = 225/507 (44%), Gaps = 40/507 (7%)

Query: 195 GVKPDNVTFSTLI-------SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
           G K D  T++T++       S   +NNL        + M   GC+P+ +TY+ +I  YGR
Sbjct: 62  GFKHDVHTYTTILGILGRAKSFDVLNNL-------LDEMIREGCEPNVVTYNRLIHCYGR 114

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
           A +++ +  L++  +      D   + TLI L   AG  D  +++Y +M+  G +P+  T
Sbjct: 115 ANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQMQHAGFRPDTFT 174

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           Y+ ++  +G+A +      ++ EMTD G +P+  TY  ++  + +A   +  L +Y +++
Sbjct: 175 YSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQ 234

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
           E G       Y  ++ +  + G+ ++A ++FE+M+ +     D+  F  M+ +    G  
Sbjct: 235 EVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERA-GWVADNPIFGLMVDMWGKTGNA 293

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGC 486
            +A   FN ML++G +PN+    SL+  Y ++   D     L  + + G+ P    +   
Sbjct: 294 EKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTYTSL 353

Query: 487 LLNVMTQTPKEELGKLVECVEKSNSKLG-YVVKLLLEEQDIEGD---FKKEATELFNSIS 542
           L +        E   L   +  +      +V  LL   + + G    F     E   S  
Sbjct: 354 LSSCAACRAAWEYDALFGLMGGTGHPAHPFVCSLLASGEMVVGIRCFFDAMQFEELES-- 411

Query: 543 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-------IQSRSPTQWSLHLK 595
              ++ + + LID       L  A K +  G   EV  +       ++ ++P  WS++L 
Sbjct: 412 ---RRGFADSLID------FLHRAGKAVAAGSVWEVAAEKNLYPNAVREKAPQYWSINLH 462

Query: 596 SLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKG--LASVFESHLKE 653
            +S G AL AL   +   ++A+      P  + I TG G+         +    E  L+ 
Sbjct: 463 VMSTGTALVALARTLAMFAEAVVRTGAAPYRIDIITGWGRRSRVPGASLVKQAVEGMLRS 522

Query: 654 LNAPFHDSPDKVGWFLTTEAAAKSWLE 680
           LN+PFH     VG F+    A   WL+
Sbjct: 523 LNSPFHLDGLNVGCFVGQGPALAEWLK 549



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 115/257 (44%), Gaps = 35/257 (13%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +  + +  DLD + +LF+ M   G +PD VT+ TLI         + A++ + 
Sbjct: 102 VVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYR 161

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M   G  PD  TYS +I   G+AG +  A+ L+    +  +      ++ +I L+  AG
Sbjct: 162 QMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAG 221

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM------------- 331
            FD  L +Y +++ +G  P+ +TY  +++ +G        + +++EM             
Sbjct: 222 KFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFG 281

Query: 332 ----------------------TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
                                  D+GL PN     SLL AY R+ + +    V   M + 
Sbjct: 282 LMVDMWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKW 341

Query: 370 GMQLSVTLYNTLLAMCA 386
           G+  ++  Y +LL+ CA
Sbjct: 342 GLYPTLQTYTSLLSSCA 358



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 145/305 (47%), Gaps = 25/305 (8%)

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           K  G K ++ TY  +L  +GRAK    +  +  EM   G  PN  TY  L+  YGRA   
Sbjct: 59  KQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDL 118

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           + +L ++  M+  G +     Y TL+ + A  G+ D A +++  M+ +   +PD++T+S 
Sbjct: 119 DSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQMQHA-GFRPDTFTYSI 177

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I      GK++ A  +F EM + G+ P+L     +I  + KA + D  ++  + L E+G
Sbjct: 178 IIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVG 237

Query: 477 ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS-----NSKLGYVVKLLLEEQDIEGDF 530
             PD    G ++ V+      E+  ++ E +E++     N   G +V +  +  + E   
Sbjct: 238 YAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAE--- 294

Query: 531 KKEATELFN-----SISKDVKKAYCNCLIDLCVNLNLLENACKLL----ELGL--TLEVY 579
             +A + FN      +  +V    CN L+   +  +  + A  +L    + GL  TL+ Y
Sbjct: 295 --KAAQWFNRMLDSGLQPNVPA--CNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTY 350

Query: 580 TDIQS 584
           T + S
Sbjct: 351 TSLLS 355



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 77/174 (44%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           +  ++ YN+ + +  K    D A +L+ D+ + G  PD VT+  ++           A +
Sbjct: 204 APSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQ 263

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            FE M   G   D   +  M+D +G+ GN E A   ++R  +   + +  A ++L+  Y 
Sbjct: 264 VFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYL 323

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
            +  +D    V   M   G+ P + TY +LL +    +  W+   ++  M   G
Sbjct: 324 RSSFYDAAGGVLGGMAKWGLYPTLQTYTSLLSSCAACRAAWEYDALFGLMGGTG 377



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 39/87 (44%)

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A+  F   +     + D  T+++++ I            + +EM+  G EPN+     LI
Sbjct: 50  AYNFFIWARKQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLI 109

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPD 480
            CYG+A   D  ++  N +  +G  PD
Sbjct: 110 HCYGRANDLDSSLKLFNVMQMVGCEPD 136


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 163/349 (46%), Gaps = 36/349 (10%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  + V+ K R   +A  +  +M   G  P  VT+++LIS    + L  +A+E   +
Sbjct: 140 VTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQ 199

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G + D  TY++++  + RAG  E A  ++   R    + +   F+ LIK++G  G 
Sbjct: 200 MVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGK 259

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F   + V+EE+K     P+++T+N LL   G+     +V  ++KEM   G  P  +TY +
Sbjct: 260 FAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNT 319

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ AY R    +  + +Y+ M E G+   ++ YN +LA  A  G  +++ +IF +MK   
Sbjct: 320 LISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGR 379

Query: 406 NCQPDSWTFSSMITICS---------------CRGKVS--------------------EA 430
            C+P+  T+ S++   +               C G +                     EA
Sbjct: 380 -CKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEA 438

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           E  F E+   GF P+L  L +++  YG+ Q        LN + E G TP
Sbjct: 439 EVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTP 487



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 153/317 (48%), Gaps = 37/317 (11%)

Query: 165 VILYNVTMKVFRKC-RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +I YNV + V+ K     +K + LF+ M + GV PD  T++TLI+C R  +L  +A   F
Sbjct: 68  LITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVF 127

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M S G  PD +TY++++D YG++   + A                             
Sbjct: 128 KDMKSMGFVPDKVTYNALLDVYGKSRRTKEA----------------------------- 158

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                 + V  EM+  G  P+++TYN+L+    R     +   +  +M + G++ +  TY
Sbjct: 159 ------MEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTY 212

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +LL  + RA   E  + V+ EM+  G + ++  +N L+ M  + G   E  ++FE++K+
Sbjct: 213 TTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKN 272

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S  C PD  T+++++ +    G  SE   +F EM  AGF P      +LI  Y +    D
Sbjct: 273 S-CCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFD 331

Query: 464 DVVRALNRLPELGITPD 480
             +    R+ E GITPD
Sbjct: 332 QAMDIYKRMLEAGITPD 348



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 126/241 (52%), Gaps = 2/241 (0%)

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I   G+ G V +A  L +    + + +D  A+++LI    + G +   + V+++M+  G
Sbjct: 4   IISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEG 63

Query: 301 VKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
            KP +ITYN +L+  G+   PW ++K +++ M + G+ P+  TY +L+    R    E+ 
Sbjct: 64  CKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEA 123

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
            +V+++MK  G       YN LL +      T EA E+  +M+ +  C P   T++S+I+
Sbjct: 124 AAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVN-GCSPSIVTYNSLIS 182

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             +  G + EA  + N+M+E G   ++F  T+L+  + +A + +  +R    +   G  P
Sbjct: 183 AYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKP 242

Query: 480 D 480
           +
Sbjct: 243 N 243



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 141/310 (45%), Gaps = 5/310 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +  + +C   D+A  ++  ML+ G+ PD  T++ +++      L  ++ + F  M 
Sbjct: 317 YNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMK 376

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGN 285
              C P+ LTY S++ AY     +     L +   +    I+P+A    TL+ +      
Sbjct: 377 DGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICS--GVIEPHAVLLKTLVLVNSKCDL 434

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                  + E+K  G  P++ T N +L   GR +   +   I   M ++G +P+  TY S
Sbjct: 435 LVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNS 494

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  + R+   E +  V +E+  KG++     YNT++      G   EA  IF +M+ S 
Sbjct: 495 LMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRES- 553

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              PD  T+++ +   +      +A  +   M++ G +PN     S++  Y K    DD 
Sbjct: 554 GLVPDVITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDDA 613

Query: 466 VRALNRLPEL 475
           +  ++ L EL
Sbjct: 614 IMFISSLHEL 623



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 154/318 (48%), Gaps = 3/318 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ +N  + VF +     +   +F +M   G  P+  T++TLIS        ++A++ +
Sbjct: 278 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIY 337

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           +RM   G  PD  TY++++ A  R G  E +  ++   ++ + + +   + +L+  Y   
Sbjct: 338 KRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANG 397

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                 L + EE+ +  ++P+ +    L+    +     + +  + E+   G SP+ +T 
Sbjct: 398 KEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTL 457

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            ++L  YGR +    T  +   M E G   S+  YN+L+ M +     + + E+ +++  
Sbjct: 458 NAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEI-L 516

Query: 404 SENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           ++  +PD+ +++++I    CR G++ EA  +F+EM E+G  P++    + +  Y      
Sbjct: 517 AKGIKPDTISYNTVI-FAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMF 575

Query: 463 DDVVRALNRLPELGITPD 480
           +D +  +  + + G  P+
Sbjct: 576 EDAIDVVRYMIKHGCKPN 593



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 2/226 (0%)

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           + +I + G  G      ++  ++   G   ++  Y +L+       R  +   ++K+M +
Sbjct: 2   AVIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEE 61

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTL-SVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
            G  P   TY  +L  YG+     + +  ++  MK  G+      YNTL+  C      +
Sbjct: 62  EGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHE 121

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           EA  +F+DMKS     PD  T+++++ +     +  EA  +  EM   G  P++    SL
Sbjct: 122 EAAAVFKDMKSM-GFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSL 180

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
           I  Y +     + +   N++ E GI  D      LL+   +  K+E
Sbjct: 181 ISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDE 226



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 100/217 (46%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   +  +   +++ +   L +++    ++P  V   TL+      +L  +A   F  
Sbjct: 385 LTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLE 444

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +   G  PD  T ++M+  YGR         + +      +      +++L+ ++  + N
Sbjct: 445 LKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSEN 504

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F+    V +E+ A G+KP+ I+YN ++    R  R  +   I+ EM ++GL P+  TY +
Sbjct: 505 FERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNT 564

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
            + +Y      ED + V R M + G + +   YN+++
Sbjct: 565 FVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVV 601



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 89/203 (43%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           +L    + V  KC  L +AE  F ++  +G  PD  T + ++S      +  K  E    
Sbjct: 420 VLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNF 479

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P   TY+S++  + R+ N E +  +      +  + D  +++T+I  Y   G 
Sbjct: 480 MNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGR 539

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 ++ EM+  G+ P++ITYN  + +            + + M  +G  PN NTY S
Sbjct: 540 MKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNS 599

Query: 346 LLRAYGRARYGEDTLSVYREMKE 368
           ++  Y +  + +D +     + E
Sbjct: 600 VVDGYCKHNHRDDAIMFISSLHE 622


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 168/317 (52%), Gaps = 1/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y + +  F     +++A+RLF++M ++G++ D   ++++ISC   +    +A+  F+
Sbjct: 299 VVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFD 358

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  P A TY ++I    +AG +E A  L +  + +   ++P  F+TLI  Y  +G
Sbjct: 359 EMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESG 418

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  L +   M+  G++ ++  YN++   + +  R  + K +   M + G+SPN  ++ 
Sbjct: 419 MVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFT 478

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+  Y +     +   V+REM+EKG   ++  YN L+   +  G   EA ++ ++++ +
Sbjct: 479 TLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELE-N 537

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               PD +T +S+I      GKV  A  +F+EM + G  PN+   T++I    K  R+++
Sbjct: 538 RGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEE 597

Query: 465 VVRALNRLPELGITPDD 481
             +  + + E G+TPDD
Sbjct: 598 AFKLYDEMKETGLTPDD 614



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 98/201 (48%), Gaps = 4/201 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L     K     +V  YN       K    D+A+ L   M++RGV P+ ++F+TLI 
Sbjct: 423 ALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLID 482

Query: 209 --CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
             C   N +  K V  F  M   G  P+ +TY+ +ID Y + GN++ A  L D   N   
Sbjct: 483 IYCKEGNFVEAKRV--FREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGL 540

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             D    ++LI      G  D  L +++EM   G+ PN++TY  ++  + +  R  +   
Sbjct: 541 IPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFK 600

Query: 327 IYKEMTDNGLSPNWNTYASLL 347
           +Y EM + GL+P+   Y+SL+
Sbjct: 601 LYDEMKETGLTPDDTVYSSLV 621



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/314 (19%), Positives = 133/314 (42%), Gaps = 1/314 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
            +++  +V+   +   +A   F+ M  +G   D  +    +   R     +  + +F RM
Sbjct: 161 FFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRM 220

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            +   +    + + ++D   + G+VEM   L D    +  + +   ++  I+ Y    + 
Sbjct: 221 VNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDL 280

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
            G   +   M+  GV  N++TY  L+       +  + + +++EM + G+  +   Y S+
Sbjct: 281 GGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSI 340

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +    R+   +  L ++ EM +KG+  S   Y  L+      G  + A  +  +M+  + 
Sbjct: 341 ISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQ-GKG 399

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
              +   F+++I      G V EA  +   M + G E ++F   S+     K  R D+  
Sbjct: 400 IDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAK 459

Query: 467 RALNRLPELGITPD 480
             L  + E G++P+
Sbjct: 460 GLLFSMVERGVSPN 473


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 168/317 (52%), Gaps = 1/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y + +  F     +++A+RLF++M ++G++ D   ++++ISC   +    +A+  F+
Sbjct: 295 VVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFD 354

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  P A TY ++I    +AG +E A  L +  + +   ++P  F+TLI  Y  +G
Sbjct: 355 EMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESG 414

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  L +   M+  G++ ++  YN++   + +  R  + K +   M + G+SPN  ++ 
Sbjct: 415 MVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFT 474

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+  Y +     +   V+REM+EKG   ++  YN L+   +  G   EA ++ ++++ +
Sbjct: 475 TLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELE-N 533

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               PD +T +S+I      GKV  A  +F+EM + G  PN+   T++I    K  R+++
Sbjct: 534 RGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEE 593

Query: 465 VVRALNRLPELGITPDD 481
             +  + + E G+TPDD
Sbjct: 594 AFKLYDEMKETGLTPDD 610



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 98/201 (48%), Gaps = 4/201 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L     K     +V  YN       K    D+A+ L   M++RGV P+ ++F+TLI 
Sbjct: 419 ALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLID 478

Query: 209 --CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
             C   N +  K V  F  M   G  P+ +TY+ +ID Y + GN++ A  L D   N   
Sbjct: 479 IYCKEGNFVEAKRV--FREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGL 536

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             D    ++LI      G  D  L +++EM   G+ PN++TY  ++  + +  R  +   
Sbjct: 537 IPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFK 596

Query: 327 IYKEMTDNGLSPNWNTYASLL 347
           +Y EM + GL+P+   Y+SL+
Sbjct: 597 LYDEMKETGLTPDDTVYSSLV 617



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/314 (19%), Positives = 133/314 (42%), Gaps = 1/314 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
            +++  +V+   +   +A   F+ M  +G   D  +    +   R     +  + +F RM
Sbjct: 157 FFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRM 216

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            +   +    + + ++D   + G+VEM   L D    +  + +   ++  I+ Y    + 
Sbjct: 217 VNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDL 276

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
            G   +   M+  GV  N++TY  L+       +  + + +++EM + G+  +   Y S+
Sbjct: 277 GGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSI 336

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +    R+   +  L ++ EM +KG+  S   Y  L+      G  + A  +  +M+  + 
Sbjct: 337 ISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQ-GKG 395

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
              +   F+++I      G V EA  +   M + G E ++F   S+     K  R D+  
Sbjct: 396 IDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAK 455

Query: 467 RALNRLPELGITPD 480
             L  + E G++P+
Sbjct: 456 GLLFSMVERGVSPN 469


>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 513

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 158/328 (48%), Gaps = 1/328 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  ++ YN  ++V  K      AE +F +M +RGV P   TF+ +I+     +   KA  
Sbjct: 168 SPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGKAHHSAKAEH 227

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F+ M    C P   TY+++I+A+ R GN   A  ++   ++  +  D   ++ L++ Y 
Sbjct: 228 LFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYS 287

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G+  G   V+E M   GVK + ++YN L+D  GRA      + IY  M   G  P   
Sbjct: 288 RGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMK 347

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           ++  LL A+ +A    D  +  R ++  G++    ++N+LL    + G  D+   ++E M
Sbjct: 348 SHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESM 407

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           + S  C+PD  T +++I + +  G +  AE +FN +   GF P++   TSL+  Y K + 
Sbjct: 408 QGSV-CKPDIITLNTLINVYAQGGYIERAEEIFNSLESKGFTPDVMSWTSLMGAYSKRKL 466

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
               V    ++   G  PD      LL+
Sbjct: 467 YRKCVSVYQKMLIAGCIPDRATAKVLLS 494



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 171/373 (45%), Gaps = 3/373 (0%)

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRGV-KPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
           T+  FR+ R    A  +++ +L   + KPD   F+ L+          +A   F  M  F
Sbjct: 71  TVAEFRRQRKWRSAIVIYEWILQGSMFKPDVGCFNMLMDAYGRTKQWTEAENTFHLMKKF 130

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
            C P   +++ ++ AY R G +E A  +    +          ++T +++   +G++   
Sbjct: 131 QCLPTETSFNVLMAAYSRGGQLERAERVLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLA 190

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
            +V+ EM+  GV P + T+  +++  G+A    + + +++ M      P+  TY +L+ A
Sbjct: 191 EDVFREMQNRGVPPAVNTFTLMINIYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALINA 250

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
           + R         ++ E++  G    +  YN LL   +  G+   A E+FE M  +   + 
Sbjct: 251 HAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEA-GVKA 309

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           D  +++ +I      G +S+A+A+++ M + GF+P +     L+  + KA R  D    +
Sbjct: 310 DHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKSHILLLSAFVKAGRVTDAENFV 369

Query: 470 NRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 528
            RL  +G+ PD      LL     + + +++  L E ++ S  K   +    L     +G
Sbjct: 370 RRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGSVCKPDIITLNTLINVYAQG 429

Query: 529 DFKKEATELFNSI 541
            + + A E+FNS+
Sbjct: 430 GYIERAEEIFNSL 442



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 144/333 (43%), Gaps = 7/333 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  +N+ M  + + +   +AE  F  M      P   +F+ L++         +A    
Sbjct: 100 DVGCFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQLERAERVL 159

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M    C P  +TY++ ++   ++G+ ++A  ++   +N       N F+ +I +YG A
Sbjct: 160 HEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGKA 219

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            +     ++++ M+     P++ TY  L++   R     + + I+ E+   G  P+  TY
Sbjct: 220 HHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTY 279

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +LL AY R  +      V+  M E G++     YN L+      G   +A  I++ MK 
Sbjct: 280 NALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKK 339

Query: 404 SENCQPDSWTFSSMITICSC---RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
               +P   T  S I + S     G+V++AE     +   G EP+ F+  SL+  YG + 
Sbjct: 340 V-GFKP---TMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSG 395

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           R D +      +      PD      L+NV  Q
Sbjct: 396 RMDKMESLYESMQGSVCKPDIITLNTLINVYAQ 428



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 111/239 (46%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++  YN  ++ + +      A+ +F+ ML+ GVK D+V+++ LI       L + A   +
Sbjct: 275 DIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIY 334

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   G  P   ++  ++ A+ +AG V  A     R  +     D   F++L+  YG +
Sbjct: 335 DSMKKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNS 394

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D   ++YE M+    KP++IT N L++   +     + + I+  +   G +P+  ++
Sbjct: 395 GRMDKMESLYESMQGSVCKPDIITLNTLINVYAQGGYIERAEEIFNSLESKGFTPDVMSW 454

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
            SL+ AY + +     +SVY++M   G          LL+ C       E  ++ E  +
Sbjct: 455 TSLMGAYSKRKLYRKCVSVYQKMLIAGCIPDRATAKVLLSSCRGPEQVKEVTDMIETQR 513


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 167/334 (50%), Gaps = 6/334 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA-RMNNLPNKAVEW 222
           + + Y+  +  F K    D A RL ++M D G++P    ++ LI+   ++NN+ + A+  
Sbjct: 225 DTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNV-HGALGL 283

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           FE M    C PD  TY+ +I   G+AG  + A+  +   R E  R D    + +I   G 
Sbjct: 284 FEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGK 343

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWN 341
           AG  D  + ++EEM  +   P+++TYN ++  +  +K R  ++ + ++ M  +G+SP+  
Sbjct: 344 AGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPF 403

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY+ L+  + +    E  + +  EM EKG       Y +L+         D A E+F+++
Sbjct: 404 TYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQEL 463

Query: 402 KSSENCQPDSW-TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           K  ENC   S   ++ MI      G++ +A  +F+EM + G  PN++   +L+    +A 
Sbjct: 464 K--ENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAG 521

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
             D+ +  + R+ E G  PD      +LN + +T
Sbjct: 522 MLDEALTTMRRMQEHGCIPDINSYNIILNGLAKT 555



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 142/301 (47%), Gaps = 10/301 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-----SCARMNNLPNK 218
           + ++ N  +    K   LD A +LF++M      P  VT++T+I     S +R++ + + 
Sbjct: 330 DTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISS- 388

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
              WFERM   G  P   TYS +ID + +    E A  L +    + +   P A+ +LI 
Sbjct: 389 ---WFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLID 445

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
             G A  +D    +++E+K      +   Y  ++  +G+A R      ++ EM   G +P
Sbjct: 446 ALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTP 505

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N   Y +L+    RA   ++ L+  R M+E G    +  YN +L   A  G    A E+ 
Sbjct: 506 NVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEML 565

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
            +MK S   +PD+ ++++++   S  G   EA  +  EM   GFE +L   +S+++  GK
Sbjct: 566 SNMKQSA-IKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGK 624

Query: 459 A 459
            
Sbjct: 625 V 625



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 130/289 (44%), Gaps = 8/289 (2%)

Query: 137 IILNNMTNPDTAA------LALTYFTNKLKASKEVILYNVTMK-VFRKCRDLDKAERLFD 189
           +++NNM N    A      + L      L+    V+ YN  +K +F     + +    F+
Sbjct: 332 VVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFE 391

Query: 190 DMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
            M   G+ P   T+S LI      N   KA+   E M   G  P    Y S+IDA G+A 
Sbjct: 392 RMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAK 451

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
             ++A  L+   +          ++ +IK  G AG  D  +N+++EM  +G  PN+  YN
Sbjct: 452 RYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYN 511

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            L+  + RA    +  T  + M ++G  P+ N+Y  +L    +       + +   MK+ 
Sbjct: 512 ALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQS 571

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            ++     YNT+L   +  G  +EA ++ ++M +    + D  T+SS++
Sbjct: 572 AIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEM-NVLGFEYDLITYSSIL 619



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 120/265 (45%), Gaps = 3/265 (1%)

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI-DPNAFST 275
           +KAV  F ++    C P A  Y+SMI      G  E    LY+   NE     D   +S 
Sbjct: 172 SKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSA 231

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LI  +   G  D  + +  EMK  G++P    Y  L+    +         +++EM    
Sbjct: 232 LISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQY 291

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
             P+  TY  L+R  G+A   ++  + + EM+ +G +    + N ++      G  D+A 
Sbjct: 292 CRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAV 351

Query: 396 EIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           ++FE+M + + C P   T++++I  +   + ++SE  + F  M  +G  P+ F  + LI 
Sbjct: 352 KLFEEMGTLQ-CIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILID 410

Query: 455 CYGKAQRTDDVVRALNRLPELGITP 479
            + K  RT+  +  L  + E G  P
Sbjct: 411 GFCKTNRTEKAMMLLEEMDEKGFPP 435



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 123/255 (48%), Gaps = 13/255 (5%)

Query: 232 DPDALTYSSMI------DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           + D  TY ++I      + YG     EM   + +  RN    + P   S +I++ G A  
Sbjct: 116 EHDTSTYMALIRCLEVVEQYG-----EMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKM 170

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYA 344
               + ++ ++K    +P    YN+++  +    +  +V  +Y EM++ G   P+  TY+
Sbjct: 171 ISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYS 230

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+ A+ +    +  + +  EMK+ GMQ +  +Y  L+A+   +     A  +FE+M+  
Sbjct: 231 ALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMR-H 289

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           + C+PD +T++ +I      G+  EA   F+EM   G  P+  V+ ++I   GKA R DD
Sbjct: 290 QYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDD 349

Query: 465 VVRALNRLPELGITP 479
            V+    +  L   P
Sbjct: 350 AVKLFEEMGTLQCIP 364



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 4/225 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +  F K    +KA  L ++M ++G  P    + +LI         + A E F+ + 
Sbjct: 405 YSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELK 464

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGN 285
                  A  Y+ MI   G+AG ++ A  L+D     K    PN  A++ L+     AG 
Sbjct: 465 ENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEM--NKLGCTPNVYAYNALMSGLARAGM 522

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D  L     M+  G  P++ +YN +L+ + +   P +   +   M  + + P+  +Y +
Sbjct: 523 LDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNT 582

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           +L A   A   E+   + +EM   G +  +  Y+++L     V +
Sbjct: 583 VLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGKVDH 627



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 94/224 (41%), Gaps = 45/224 (20%)

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + ++R  G A+     ++++ ++K +  Q +   YN+++ M    G  ++  E++ +M +
Sbjct: 159 SDIIRMLGNAKMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSN 218

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-------------------- 443
             +C PD+ T+S++I+     G+   A  + NEM + G +                    
Sbjct: 219 EGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVH 278

Query: 444 ---------------PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
                          P++F  T LI+  GKA R D+     + +   G  PD      ++
Sbjct: 279 GALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMI 338

Query: 489 NVMTQTPK--------EELGKLVECVEKSNSKLGYVVKLLLEEQ 524
           N + +  +        EE+G L +C+  S      ++K L E +
Sbjct: 339 NFLGKAGRLDDAVKLFEEMGTL-QCI-PSVVTYNTIIKALFESK 380


>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Brachypodium distachyon]
          Length = 857

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/446 (23%), Positives = 204/446 (45%), Gaps = 9/446 (2%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G K D  T++T+I                  M    C P  +TY+ +I AYGRA  +  A
Sbjct: 359 GFKHDGHTYTTMIGILGQARQFGIMRNLLHEMNRDRCKPTVVTYNRIIHAYGRANYLREA 418

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             +++      +  D   + TLI ++  AG  +  +++Y  M+ +G+ P+  TY+ +++ 
Sbjct: 419 VKVFEEMEEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNC 478

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +G+  +      ++ EM +NG +PN  TY  ++    +AR  ++ + +YR+M+  G +  
Sbjct: 479 LGKGGQLAAAYKLFCEMIENGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQVAGFRPD 538

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
              Y+ ++ +    G+ DEA  +F +M+   +  PD   +  ++ +    G V +A   +
Sbjct: 539 KITYSIVMEVLGHCGHLDEAEAVFIEMR--RDWAPDEPVYGLLVDLWGKAGNVDKALGWY 596

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           + ML+ G +PN+    SL+  + K  R  D    L  +   G+ P  +    LL+  T  
Sbjct: 597 HAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLSCCTDA 656

Query: 495 PKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF----NSISKDVKKAYC 550
              ++G   + +  +     ++  L L + +  G+  ++ T  F    +S  ++ K+   
Sbjct: 657 -HAQMGLCCQLMAITGHP-AHMFLLYLPDAEPGGENVRDHTRYFLDMMHSEDRESKRGLM 714

Query: 551 NCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIW 609
           + +ID      L E A  + E+     VY D ++ +S   W ++L  +S G A+TAL   
Sbjct: 715 DAVIDFLHKSGLKEEAGFIWEVAAQKNVYPDSVREKSSAYWLINLHLMSEGTAVTALSRT 774

Query: 610 INDLSKALESGEEFPPLLGINTGHGK 635
           +    + +      P  + I TG G+
Sbjct: 775 LAWFHRQILVMGSCPERIDIVTGWGR 800


>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
 gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
          Length = 866

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 183/392 (46%), Gaps = 51/392 (13%)

Query: 134 DCVIILNNMTN-PDTAALA--LTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDD 190
           D   ++N +++ P   ++A  L  F NKL  +     + +  K F +  D  ++ RLF  
Sbjct: 77  DVETLINKLSSLPPRGSIARCLDVFKNKLSLND----FALVFKEFAQRGDWQRSLRLFKH 132

Query: 191 MLDRGV--KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
           M  R +  KP+   ++ +IS      L  K  + FE M + G      +Y+++I++YGR 
Sbjct: 133 M-QRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSYGRN 191

Query: 249 GNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNM 305
           G  E++  L +R + E  R+ P+   ++T+I      G +++G L ++ EM+  G++P++
Sbjct: 192 GKYEVSLELLERMKKE--RVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHEGIQPDI 249

Query: 306 ITYNNLL-----------------------------------DTMGRAKRPWQVKTIYKE 330
           +TYN LL                                   DT G+  R  +V  + KE
Sbjct: 250 VTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKE 309

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           M   G  P  ++Y  LL AY R    ED   V+R M+E G   +   Y+ LL +    G 
Sbjct: 310 MASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGR 369

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
            DE  E+F +MK S N +PD+ T++++I +    G   E   +F++M E   EPN+    
Sbjct: 370 YDEVRELFLEMKVS-NTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYE 428

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
            LI   GK    DD  + L  + E G+ P  +
Sbjct: 429 GLIFACGKGGLHDDAKKILLHMSEKGMIPSSK 460



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 119/483 (24%), Positives = 211/483 (43%), Gaps = 20/483 (4%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEW 222
           ++  Y   +  F K   LDK   L  +M   G  P+  +++ L+   AR+ N+ + A   
Sbjct: 283 DITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIED-ATGV 341

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F  M   GC P+A TYS ++  YG+ G  +    L+   +      D   ++TLI ++G 
Sbjct: 342 FRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGE 401

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G F   + ++ +M    V+PNM TY  L+   G+       K I   M++ G+ P+   
Sbjct: 402 GGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKA 461

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y  ++ AYG+A   E+ L     M E G + ++  YNTL+ M A  G   E   I   M 
Sbjct: 462 YTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKM- 520

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
                  +  +F+ +I      G+  EA   + EM ++   P+   L +++  Y  A   
Sbjct: 521 GDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVYCIAGLV 580

Query: 463 DDVVRALNRLPELGITPDDRFCGCL-LNVMTQTPK--EELGKLVECVEKSNSKLGYVVKL 519
           D+ V     +   GI P+   C C+ L V  ++ +  E    L E +    S +  V+  
Sbjct: 581 DESVEQFQEIKASGILPN-VMCYCMMLAVYAKSDRWNEAYELLDEMLTNRASNIHQVIG- 638

Query: 520 LLEEQDIEGDFKKEAT--------ELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE 571
               Q I+GDF  ++         +  NS    +   + N L++    L   E A ++L 
Sbjct: 639 ----QMIKGDFDDDSNWQMVEYVFDKLNSEGCGLGMRFYNTLLEALWWLGQKERAVRVLG 694

Query: 572 LGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINT 631
                  + ++  +S   WS+ +  +  G+A TA+ +W+N++ +   + ++ P L  +  
Sbjct: 695 EATKRGHFPELFRKSKLVWSVDIHRMWEGSAYTAISVWLNNMYEIFMNRQDIPQLASVIV 754

Query: 632 GHG 634
             G
Sbjct: 755 VRG 757


>gi|356567150|ref|XP_003551784.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Glycine max]
          Length = 875

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 160/664 (24%), Positives = 294/664 (44%), Gaps = 90/664 (13%)

Query: 87  ASKLKEKSYDTRYNSLVKLAADLDSCSATED---DVFSVLRCLGDDFLEQDCVI---ILN 140
           A  L E+S +  Y + V   + + S     D   +  S+LR +G+  LE + V    I++
Sbjct: 208 ALNLFEESRNRGYGNTVYSFSAMISALGRNDCFSEAVSLLRSMGNFGLEPNLVTYNAIID 267

Query: 141 NMTNPDTAALALTYFTNKLKASK---EVILYNVTMKV------FRKCRDLDKAERLFDDM 191
                +     +  F  ++ A+    + + YN  +K       ++ CRDL        +M
Sbjct: 268 AGAKGELPFEIVVKFLEEMIAAGCLPDRLTYNSLLKTCVAKGRWQLCRDL------LAEM 321

Query: 192 LDRGVKPDNVTFSTLISC----ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
             +G+  D  T++T +       RM+ L   A++    MP+    P+ +TYS+++  Y +
Sbjct: 322 EWKGIGRDVYTYNTYVDALCKGGRMD-LARHAID--VEMPAKNILPNVVTYSTLMAGYSK 378

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
           A   E A  +YD  ++   R+D  +++TL+ LY   G F+  +  ++EM+  G+K +++T
Sbjct: 379 AERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDVVT 438

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           YN L++  GR  +  +V+ ++ EM    + PN  TY++L++ Y + R   + + VYRE+K
Sbjct: 439 YNALIEGYGRHNKYVEVRKLFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYRELK 498

Query: 368 EKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           ++GM+  V  Y+ L+ A+C + G  + +  +  D+ + +  +P+  T++S+I       +
Sbjct: 499 QEGMKTDVVFYSALIDALCKN-GLIESSLRLL-DVMTEKGSRPNVVTYNSIIDAFRIGQQ 556

Query: 427 VSEAEAMFNEMLEAG---FEP-----------------NLFVLTSLIQCYG--------- 457
           +   E   +   +A     +P                 N  ++  L Q            
Sbjct: 557 LPALECAVDTSFQANEHQIKPSSSRLSAGNFQDQKTGNNDEIMKMLEQLAAEKAGLMKKD 616

Query: 458 KAQRTDD--VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG 514
           K  R D   +V+   ++ E+ I P+      +LN  +     ++  KL++ +   +S + 
Sbjct: 617 KRSRQDSFYLVQIFQKMQEMEIKPNVVTFSAILNACSCCETFQDASKLLDALCMFDSHVY 676

Query: 515 YVVKLLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACKLLE 571
            V   LL     +G +  +A  LF+ +         A+ N L D+            L  
Sbjct: 677 GVAHGLLMGHG-QGLW-NQAQTLFDELEHLDSSTASAFYNALTDM------------LWH 722

Query: 572 LGLTLEVYT-DIQSRSPTQWS-------LHLKSLSLGAALTALHIWINDLSKALESGEEF 623
            G  L   T  I+ R+   W        L L   S GAA   +H W+ +L   +  G++ 
Sbjct: 723 FGQKLGAQTVVIEGRNRNVWKGGWSTECLDLHLTSCGAACAMVHTWLLELRTTVFGGQKP 782

Query: 624 PPLLGINTGHGKHK--YSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLES 681
           PP+L I TG GKH     +  L    E+ L  + APF  S   +G F +      +WL  
Sbjct: 783 PPILSILTGWGKHSKVVGNGTLRKAVEALLNGIGAPFQISECNLGRFKSEGPEVTAWLRQ 842

Query: 682 RSSL 685
            S+L
Sbjct: 843 PSTL 846



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 195/424 (45%), Gaps = 24/424 (5%)

Query: 80  VNPKSPRA---SKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCV 136
           +N   PRA   ++   K+ +   +SL     D+    A  D+V    R     ++ +D V
Sbjct: 105 MNSGGPRAVPNNQQHSKAAEEVLHSLTNAGNDV----AAIDNVLLNYRL----YVAEDYV 156

Query: 137 IILNNMTNPDTAALAL-TYFTNKLKASKEVILYNVTMKVFRKCRDLDKAE---RLFDDML 192
            +L    N     LA  TY     +A+    +  +T  + R    L K E    LF++  
Sbjct: 157 YLLKEFANTGDLLLATRTYNFAMSRATDNTFMGKLTSNMIRTLGRLKKIELALNLFEESR 216

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +RG      +FS +IS    N+  ++AV     M +FG +P+ +TY+++IDA  +    E
Sbjct: 217 NRGYGNTVYSFSAMISALGRNDCFSEAVSLLRSMGNFGLEPNLVTYNAIIDAGAKG---E 273

Query: 253 MAFGLYDRARNEKWRI----DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           + F +  +   E        D   +++L+K     G +  C ++  EM+  G+  ++ TY
Sbjct: 274 LPFEIVVKFLEEMIAAGCLPDRLTYNSLLKTCVAKGRWQLCRDLLAEMEWKGIGRDVYTY 333

Query: 309 NNLLDTMGRAKR-PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           N  +D + +  R       I  EM    + PN  TY++L+  Y +A   ED L++Y EMK
Sbjct: 334 NTYVDALCKGGRMDLARHAIDVEMPAKNILPNVVTYSTLMAGYSKAERFEDALNIYDEMK 393

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
              ++L    YNTL+ + A++G+ +EA   F++M+     + D  T++++I       K 
Sbjct: 394 HLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECC-GIKNDVVTYNALIEGYGRHNKY 452

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
            E   +F+EM      PN    ++LI+ Y K +   + +     L + G+  D  F   L
Sbjct: 453 VEVRKLFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYRELKQEGMKTDVVFYSAL 512

Query: 488 LNVM 491
           ++ +
Sbjct: 513 IDAL 516



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 167/375 (44%), Gaps = 77/375 (20%)

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           S+MI   GR   +E+A  L++ +RN  +     +FS +I   G    F   +++   M  
Sbjct: 193 SNMIRTLGRLKKIELALNLFEESRNRGYGNTVYSFSAMISALGRNDCFSEAVSLLRSMGN 252

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIY-KEMTDNGLSPNWNTYASLLR---AYGRAR 354
            G++PN++TYN ++D   + + P+++   + +EM   G  P+  TY SLL+   A GR +
Sbjct: 253 FGLEPNLVTYNAIIDAGAKGELPFEIVVKFLEEMIAAGCLPDRLTYNSLLKTCVAKGRWQ 312

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCA-----------DV-------------- 388
              D L+   EM+ KG+   V  YNT + A+C            DV              
Sbjct: 313 LCRDLLA---EMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAIDVEMPAKNILPNVVTY 369

Query: 389 -----GYT-----DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
                GY+     ++A  I+++MK     + D  ++++++ + +  G   EA   F EM 
Sbjct: 370 STLMAGYSKAERFEDALNIYDEMKHLL-IRLDRVSYNTLVGLYANLGWFEEAVGKFKEME 428

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
             G + ++    +LI+ YG+  +  +V +  + +    I P+D     L+ + T+     
Sbjct: 429 CCGIKNDVVTYNALIEGYGRHNKYVEVRKLFDEMKARRIYPNDLTYSTLIKIYTKG---- 484

Query: 499 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID-LC 557
                              ++  E  D+  + K+E       +  DV   + + LID LC
Sbjct: 485 -------------------RMYAEAMDVYRELKQEG------MKTDV--VFYSALIDALC 517

Query: 558 VNLNLLENACKLLEL 572
            N  L+E++ +LL++
Sbjct: 518 KN-GLIESSLRLLDV 531


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 170/326 (52%), Gaps = 8/326 (2%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +N  + V+ K R  D+A  +  +M   G  P  VT+++LIS    + L  +A E  E 
Sbjct: 285 VTFNSLLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEE 344

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  PD +TY+++I    RAG ++ A G YD       + +   ++ LIKL+G  G 
Sbjct: 345 MEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGK 404

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F   + V++++++ G  P+++T+N LL   G+     +V  ++KEM  +G  P  +TY S
Sbjct: 405 FPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVS 464

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ +Y R    + ++ +Y+ M E G+   ++ YN +L+  A  G  ++A ++F +M++ +
Sbjct: 465 LISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLD 524

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
            C+PD  ++SS++   +   K+ + +A+  ++     E +  ++ +L+    K     + 
Sbjct: 525 -CRPDELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSET 583

Query: 466 VRALNRLPELGITPDDRFCGCLLNVM 491
            +A     ELG     R C   +NV+
Sbjct: 584 EKAFL---ELG----RRRCSLDINVL 602



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 153/299 (51%), Gaps = 3/299 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +   R+     +A ++FD+M   G +PD VTF++L+       + ++A+   + M 
Sbjct: 252 YNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGKARMHDEAIGVLKEME 311

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P  +TY+S+I +Y + G ++ A  L +    +  + D   ++TLI     AG  D
Sbjct: 312 LGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKID 371

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMG-RAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
             +  Y+EM   G KPN+ TYN L+   G R K P ++  ++ ++   G  P+  T+ +L
Sbjct: 372 AAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFP-EMMAVFDDLRSAGFVPDVVTWNTL 430

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L  +G+     +   V++EMK+ G       Y +L++  +  G  D++ EI++ M  +  
Sbjct: 431 LAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEA-G 489

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             PD  T++++++  +  G+  +AE +F EM      P+    +SL+  Y  A++ D +
Sbjct: 490 IYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKM 548



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 143/285 (50%), Gaps = 2/285 (0%)

Query: 197 KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR-AGNVEMAF 255
           +PD   ++ L+S     +    AV  F RM + G  P  +TY+ ++  Y + A   +   
Sbjct: 175 EPDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVV 234

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L D  +N+   +D   ++TLI        +     V++EM+A G +P+ +T+N+LLD  
Sbjct: 235 ALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVY 294

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           G+A+   +   + KEM   G  P+  TY SL+ +Y +    ++   +  EM+ KG+Q  V
Sbjct: 295 GKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDV 354

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y TL++     G  D A   +++M  +  C+P+  T++++I +   RGK  E  A+F+
Sbjct: 355 ITYTTLISGLDRAGKIDAAIGTYDEMLRN-GCKPNLCTYNALIKLHGVRGKFPEMMAVFD 413

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           ++  AGF P++    +L+  +G+     +V      + + G  P+
Sbjct: 414 DLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPE 458



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 152/327 (46%), Gaps = 2/327 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK-AVEWFERM 226
           Y   +  F +      A  +F  M+  G++P  VT++ ++       +P K  V   + M
Sbjct: 181 YTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVVALVDSM 240

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            + G   D  TY+++I    R    + A  ++D  R   +  D   F++L+ +YG A   
Sbjct: 241 KNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGKARMH 300

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  + V +EM+  G  P+++TYN+L+ +  +     +   + +EM   G+ P+  TY +L
Sbjct: 301 DEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTL 360

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +    RA   +  +  Y EM   G + ++  YN L+ +    G   E   +F+D++S+  
Sbjct: 361 ISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSA-G 419

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             PD  T+++++ +    G  SE   +F EM ++G+ P      SLI  Y +    D  +
Sbjct: 420 FVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSM 479

Query: 467 RALNRLPELGITPDDRFCGCLLNVMTQ 493
               R+ E GI PD      +L+ + +
Sbjct: 480 EIYKRMIEAGIYPDISTYNAVLSALAR 506



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 125/284 (44%), Gaps = 40/284 (14%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW------ 322
           D +A++ L+  +  A  F   + V+  M A G++P ++TYN +L    +   PW      
Sbjct: 177 DASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVVAL 236

Query: 323 ------------------------------QVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
                                         +   ++ EM   G  P+  T+ SLL  YG+
Sbjct: 237 VDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGK 296

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
           AR  ++ + V +EM+  G   SV  YN+L++     G   EA E+ E+M+  +  QPD  
Sbjct: 297 ARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEME-VKGIQPDVI 355

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T++++I+     GK+  A   ++EML  G +PNL    +LI+ +G   +  +++   + L
Sbjct: 356 TYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDL 415

Query: 473 PELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYV 516
              G  PD      LL V  Q     L   V  V K   K GYV
Sbjct: 416 RSAGFVPDVVTWNTLLAVFGQN---GLDSEVSGVFKEMKKSGYV 456



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 143/301 (47%), Gaps = 1/301 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +  + K   L +A  L ++M  +G++PD +T++TLIS        + A+  ++
Sbjct: 319 VVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYD 378

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   GC P+  TY+++I  +G  G       ++D  R+  +  D   ++TL+ ++G  G
Sbjct: 379 EMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNG 438

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  V++EMK  G  P   TY +L+ +  R     Q   IYK M + G+ P+ +TY 
Sbjct: 439 LDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYN 498

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           ++L A  R    E    ++ EM+    +     Y++LL   A+    D+   + ED+  +
Sbjct: 499 AVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDI-YA 557

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           E  +       +++ + S    +SE E  F E+       ++ VL +++  YGK +    
Sbjct: 558 EKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKK 617

Query: 465 V 465
           V
Sbjct: 618 V 618



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 154/352 (43%), Gaps = 36/352 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI Y   +    +   +D A   +D+ML  G KP+  T++ LI    +     + +  F
Sbjct: 353 DVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVF 412

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + + S G  PD +T+++++  +G+ G      G++   +   +  + + + +LI  Y   
Sbjct: 413 DDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRC 472

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G FD  + +Y+ M   G+ P++ TYN +L  + R  R  Q + ++ EM +    P+  +Y
Sbjct: 473 GLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSY 532

Query: 344 ASLLRAYGRAR------------YGE-----------------------DTLSVYREMKE 368
           +SLL AY  A+            Y E                       +T   + E+  
Sbjct: 533 SSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGR 592

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
           +   L + + N ++++        +  EI   MK S +    + T++S++ + S  G   
Sbjct: 593 RRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGS-SINLSTATYNSLMHMYSRLGDCE 651

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           + E +  E+  +G  P+ +   ++I  YG+  +  +  R  + +   G+ PD
Sbjct: 652 KCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPD 703



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 152/326 (46%), Gaps = 1/326 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +N  + VF +     +   +F +M   G  P+  T+ +LIS      L ++++E +
Sbjct: 423 DVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIY 482

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           +RM   G  PD  TY++++ A  R G  E A  L+    N   R D  ++S+L+  Y  A
Sbjct: 483 KRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANA 542

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D    + E++ A  ++ +      L+    +     + +  + E+     S + N  
Sbjct: 543 KKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGRRRCSLDINVL 602

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +++  YG+ R  +    +   MK   + LS   YN+L+ M + +G  ++   I  ++KS
Sbjct: 603 NAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENILTEIKS 662

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S   +PD +++++MI     +G++ EA  +F+EM  +G  P++      ++ Y      +
Sbjct: 663 S-GARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFE 721

Query: 464 DVVRALNRLPELGITPDDRFCGCLLN 489
           + +  +  +   G  P++R    +L 
Sbjct: 722 EAIDLVRYMVTRGCKPNERTYNSILQ 747



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 145/342 (42%), Gaps = 20/342 (5%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           + +C   D++  ++  M++ G+ PD  T++ ++S         +A + F  M +  C PD
Sbjct: 469 YSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPD 528

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
            L+YSS++ AY  A  ++    L +    EK         TL+ +     N       + 
Sbjct: 529 ELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAFL 588

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           E+       ++   N ++   G+ +   +V+ I   M  + ++ +  TY SL+  Y R  
Sbjct: 589 ELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLG 648

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             E   ++  E+K  G +     YNT++      G   EA  +F +MKSS    PD  T+
Sbjct: 649 DCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSS-GLIPDIVTY 707

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +  +          EA  +   M+  G +PN     S++Q Y +  +  D    L+ LP+
Sbjct: 708 NIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADAKSFLSNLPQ 767

Query: 475 L--GITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG 514
           L  GI+                 K+E  +L+E + +  S+ G
Sbjct: 768 LHPGIS-----------------KQEQQRLLELLARHTSRDG 792



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 45/84 (53%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +  + +   + +A RLF +M   G+ PD VT++  +     N++  +A++    M 
Sbjct: 672 YNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMV 731

Query: 228 SFGCDPDALTYSSMIDAYGRAGNV 251
           + GC P+  TY+S++  Y R G +
Sbjct: 732 TRGCKPNERTYNSILQEYCRHGKI 755


>gi|449463623|ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Cucumis sativus]
          Length = 580

 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 158/318 (49%), Gaps = 7/318 (2%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           + K  D ++AE++ + M  +G  P+ V+ + L+         N A   F RM S G +P 
Sbjct: 148 YGKLGDFNRAEKVLNLMNKKGYAPNVVSHTALMEAYGRGRRYNNAEAIFRRMQSGGPEPS 207

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI---DPNAFSTLIKLYGTAGNFDGCLN 291
           ALTY  M+  +      + A  L+D   N++  +   D   F  +I ++  AGN++    
Sbjct: 208 ALTYQIMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAGNYEKARK 267

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           V+ EM A GV    +TYN+L+      K   +V  IY +M   GL P+  +YA L+ AYG
Sbjct: 268 VFAEMAARGVPQTTVTYNSLMSFETNYK---EVSKIYDQMQRAGLQPDVVSYALLISAYG 324

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           +AR  E+ L+V+ EM + G++ +   YN LL   A  G  ++A  +F+ MK  + C PD 
Sbjct: 325 KARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMK-RDRCSPDI 383

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            ++++M++       +  AE  F  + + GF PN+    +LI+ Y K    + +++    
Sbjct: 384 CSYTTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEE 443

Query: 472 LPELGITPDDRFCGCLLN 489
           +   GI  +      +++
Sbjct: 444 MKVNGIRVNQTILTTIMD 461



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 151/353 (42%), Gaps = 51/353 (14%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRG---VKPDNVTFSTLISCARMNNLPNKAVEW 222
           + Y + +K F +     +AE LFD +L++    +KPD   F  +I   +      KA + 
Sbjct: 209 LTYQIMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAGNYEKARKV 268

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F  M + G     +TY+S++       N +    +YD+ +    + D  +++ LI  YG 
Sbjct: 269 FAEMAARGVPQTTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLISAYGK 325

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           A   +  L V+EEM   G++P    YN LLD    +    Q K ++K M  +  SP+  +
Sbjct: 326 ARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICS 385

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y ++L AY  A   E   + +R +K+ G + +V  Y TL+   A +   ++  + +E+MK
Sbjct: 386 YTTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEMK 445

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            +                                    G   N  +LT+++  YGK +  
Sbjct: 446 VN------------------------------------GIRVNQTILTTIMDAYGKNKDF 469

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGY 515
              V   N +   G+ PD +    LL+         L K  E ++++N  +GY
Sbjct: 470 GSAVIWFNEIESCGLRPDQKAKNILLS---------LAKTAEELDEANQLVGY 513



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 92/184 (50%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y + +  + K R  ++A  +F++MLD G++P +  ++ L+    ++ +  +A   F
Sbjct: 312 DVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVF 371

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M    C PD  +Y++M+ AY  A ++E A   + R + + +R +   + TLIK Y   
Sbjct: 372 KSMKRDRCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVTYGTLIKGYAKI 431

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            N +  +  YEEMK  G++ N      ++D  G+ K        + E+   GL P+    
Sbjct: 432 NNLEKMIKRYEEMKVNGIRVNQTILTTIMDAYGKNKDFGSAVIWFNEIESCGLRPDQKAK 491

Query: 344 ASLL 347
             LL
Sbjct: 492 NILL 495



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 116/241 (48%), Gaps = 7/241 (2%)

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           W      F  LI  YG  G+F+    V   M   G  PN++++  L++  GR +R    +
Sbjct: 134 WNFSEMDFVMLITAYGKLGDFNRAEKVLNLMNKKGYAPNVVSHTALMEAYGRGRRYNNAE 193

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM--KEKG-MQLSVTLYNTLL 382
            I++ M   G  P+  TY  +L+ +      ++   ++  +  KEK  ++    +++ ++
Sbjct: 194 AIFRRMQSGGPEPSALTYQIMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHMII 253

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            M    G  ++A ++F +M ++      + T++S+++  +   +VS+   ++++M  AG 
Sbjct: 254 YMFKKAGNYEKARKVFAEM-AARGVPQTTVTYNSLMSFETNYKEVSK---IYDQMQRAGL 309

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 502
           +P++     LI  YGKA+R ++ +     + + GI P  +    LL+    +   E  K+
Sbjct: 310 QPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKI 369

Query: 503 V 503
           V
Sbjct: 370 V 370



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNK 218
           + S ++  Y   +  +    D++ AE  F  +   G +P+ VT+ TLI   A++NNL  K
Sbjct: 378 RCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVTYGTLIKGYAKINNL-EK 436

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
            ++ +E M   G   +    ++++DAYG+  +   A   ++   +   R D  A + L+ 
Sbjct: 437 MIKRYEEMKVNGIRVNQTILTTIMDAYGKNKDFGSAVIWFNEIESCGLRPDQKAKNILLS 496

Query: 279 LYGTAGNFD 287
           L  TA   D
Sbjct: 497 LAKTAEELD 505



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 16/158 (10%)

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           ++K+  D     NW    + +   G A      +SV R  + K   +   L    L    
Sbjct: 60  VFKDEADEAEQKNWRRLMNEIEETGSA------VSVLRSERIKNEAIPKDLVLGTLVRFK 113

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSM-----ITICSCRGKVSEAEAMFNEMLEAG 441
            +   +   EI E +++        W FS M     IT     G  + AE + N M + G
Sbjct: 114 QLKKWNLVSEILEWLRTQ-----SWWNFSEMDFVMLITAYGKLGDFNRAEKVLNLMNKKG 168

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           + PN+   T+L++ YG+ +R ++      R+   G  P
Sbjct: 169 YAPNVVSHTALMEAYGRGRRYNNAEAIFRRMQSGGPEP 206


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 166/334 (49%), Gaps = 4/334 (1%)

Query: 165 VILYNVTMKVFRKCR-DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++ YNV    + K      +   L D M + G++ D  T++TLISC R   L  +A + F
Sbjct: 219 LVTYNVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVF 278

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M + G +PD +T++S++D YG+A   E A G+  R  N         +++LI  Y   
Sbjct: 279 DEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKD 338

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +  L + +EM+  G+KP+++TY  L+  + R  +       Y EM  NG SPN  TY
Sbjct: 339 GLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTY 398

Query: 344 ASLLRAYG-RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
            +L++ +G R ++ E  ++V+ +++  G    V  +NTLL++    G   E   +F++MK
Sbjct: 399 NALIKLHGVRGKFTE-MMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMK 457

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            +    P+  T+ S+I+  S  G   +A  ++  M+EAG  P++    +++    +  R 
Sbjct: 458 KA-GYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRW 516

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           +   +    + +    PD+     LL+      K
Sbjct: 517 EQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKK 550



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 149/298 (50%), Gaps = 1/298 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +   R+     +A ++FD+M   G +PD VTF++L+          +A+   +RM 
Sbjct: 258 YNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRME 317

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + GC P  +TY+S+I AY + G +E A  L         + D   ++TLI      G  D
Sbjct: 318 NAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKID 377

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L  Y EM   G  PN+ TYN L+   G   +  ++  ++ ++   G  P+  T+ +LL
Sbjct: 378 AALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLL 437

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             +G+     +   V++EMK+ G       Y +L++  +  G  D+A EI++ M  +   
Sbjct: 438 SVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEA-GI 496

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
            PD  T++++++  +  G+  +AE +F EM++   +P+    +SL+  Y  A++ D +
Sbjct: 497 YPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKM 554



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 145/291 (49%), Gaps = 2/291 (0%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           +L+    PD   ++ L+S          AV  F+RM   G  P  +TY+ +  AY +   
Sbjct: 175 ILEAAPAPDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSV 234

Query: 251 V-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
             +    L D  + +    D   ++TLI      G       V++EMKA G +P+ +T+N
Sbjct: 235 PWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFN 294

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
           +LLD  G+A++  +   + K M + G +P+  TY SL+ AY +    E+ L + +EM+ +
Sbjct: 295 SLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFR 354

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           GM+  V  Y TL++    VG  D A   + +M  +  C P+  T++++I +   RGK +E
Sbjct: 355 GMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRN-GCSPNLCTYNALIKLHGVRGKFTE 413

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             A+F+++  AG+ P++    +L+  +G+     +V      + + G  P+
Sbjct: 414 MMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPE 464



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 149/313 (47%), Gaps = 1/313 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +  + K   L++A  L  +M  RG+KPD VT++TLIS        + A+  + 
Sbjct: 325 VVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYS 384

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   GC P+  TY+++I  +G  G       ++D  R+  +  D   ++TL+ ++G  G
Sbjct: 385 EMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNG 444

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  V++EMK  G  P   TY +L+ +  R     Q   IYK M + G+ P+ +TY 
Sbjct: 445 LDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYN 504

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           ++L A  R    E    ++ EM ++  +     Y++LL   A+    D+   + ED+  +
Sbjct: 505 AVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDI-YA 563

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           E  +  +W   +++ + +    + E E  F E+       ++ VL +++  YGK +    
Sbjct: 564 ERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKK 623

Query: 465 VVRALNRLPELGI 477
           V   L+ + E  I
Sbjct: 624 VEEVLSLMMENSI 636



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 135/311 (43%), Gaps = 44/311 (14%)

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I  + RAG +  A  + + A       D +A++ L+  +  AG F   + V++ M   GV
Sbjct: 160 IRVFARAGCLAEASAILEAAPAP----DASAYTALVSAFSRAGRFRDAVAVFQRMVDGGV 215

Query: 302 KPNMITYNNLLDTMGRAKRPW------------------------------------QVK 325
           +P ++TYN +     +   PW                                    +  
Sbjct: 216 QPALVTYNVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRGLHREAA 275

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            ++ EM   G  P+  T+ SLL  YG+AR  E+ + V + M+  G   SV  YN+L++  
Sbjct: 276 QVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAY 335

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G  +EA E+ ++M+     +PD  T++++I+     GK+  A A ++EM+  G  PN
Sbjct: 336 VKDGLLEEALELKQEME-FRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPN 394

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 505
           L    +LI+ +G   +  +++   + L   G  PD      LL+V  Q     L   V  
Sbjct: 395 LCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQN---GLDSEVSG 451

Query: 506 VEKSNSKLGYV 516
           V K   K GY+
Sbjct: 452 VFKEMKKAGYI 462



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 163/373 (43%), Gaps = 41/373 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +K+        +   +FDD+   G  PD VT++TL+S    N L ++    F+ M 
Sbjct: 398 YNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMK 457

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P+  TY S+I +Y R G  + A  +Y R        D + ++ ++      G ++
Sbjct: 458 KAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWE 517

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-------------------PWQVKTI- 327
               ++ EM     KP+ ++Y++LL     AK+                    W VKT+ 
Sbjct: 518 QAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLV 577

Query: 328 ---------------YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                          ++E+     S + N   +++  YG+ +  +    V   M E  + 
Sbjct: 578 LVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSIN 637

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            S   YN+L+ M + +G  ++   I  ++KSS   +PD ++++++I     +G++ EA  
Sbjct: 638 HSAATYNSLMHMYSRLGDCEKCESILTEIKSS-GMRPDRYSYNTVIYAYGRKGQMKEASR 696

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           +F+EM  +G +P++      I+ Y      ++ +  +  L   G  P++R    +L   +
Sbjct: 697 LFSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYS 756

Query: 493 QTPKEELGKLVEC 505
           +      G++VE 
Sbjct: 757 RH-----GRMVEA 764



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 141/315 (44%), Gaps = 13/315 (4%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           + +C   D+A  ++  M++ G+ PD  T++ ++S         +A + F  M    C PD
Sbjct: 475 YSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPD 534

Query: 235 ALTYSSMIDAYGRAGNVE----MAFGLY-DRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
            L+YSS++ AY  A  ++    ++  +Y +R     W +      TL+ +     N    
Sbjct: 535 ELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLV-----KTLVLVNNKVNNLPET 589

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
              ++E++      ++   N ++   G+ K   +V+ +   M +N ++ +  TY SL+  
Sbjct: 590 EKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHM 649

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
           Y R    E   S+  E+K  GM+     YNT++      G   EA  +F +MK S   +P
Sbjct: 650 YSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCS-GVKP 708

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           D  T++  I          EA  +   ++  G  PN     S++Q Y +  R  +    L
Sbjct: 709 DIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSRHGRMVEAKSFL 768

Query: 470 NRLPEL--GITPDDR 482
           + LP++  GI+  ++
Sbjct: 769 SNLPKIYPGISKQEK 783



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 107/232 (46%), Gaps = 7/232 (3%)

Query: 99  YNSLVKLAAD---LDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYF 155
           Y+SL+   A+   LD      +D+++  R    ++L +  V++ N + N      A    
Sbjct: 538 YSSLLHAYANAKKLDKMKTLSEDIYAE-RIERHNWLVKTLVLVNNKVNNLPETEKAFQEL 596

Query: 156 TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNN 214
             + + S ++ + N  + ++ K + + K E +   M++  +     T+++L+   +R+ +
Sbjct: 597 RRR-RCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLGD 655

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
              K       + S G  PD  +Y+++I AYGR G ++ A  L+   +    + D   ++
Sbjct: 656 C-EKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYN 714

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             IK Y     F+  +++   +   G +PN  T+N++L    R  R  + K+
Sbjct: 715 IFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSRHGRMVEAKS 766


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 157/288 (54%), Gaps = 1/288 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +N  + V+ K R  D+A  +  +M   G  P  VT+++LIS    + L  +AV   + 
Sbjct: 279 VTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQE 338

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  PD +TY+++I    RAG ++ A   YD       + +   ++ LIK++G  G 
Sbjct: 339 MEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGK 398

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F   + V++E+++ G  P+++T+N LL   G+     +V  ++KEM   G  P  +TY S
Sbjct: 399 FPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS 458

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ +Y R    +  + +Y+ M E G+   V+ YN +L+  A  G  ++A ++F +M+   
Sbjct: 459 LISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME-ER 517

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           +C+PD +++SS++   +   ++ + +A+ +++     EP+ +++ +L+
Sbjct: 518 DCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLV 565



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 172/355 (48%), Gaps = 9/355 (2%)

Query: 118 DVFSVLRCLGDDFLEQDCVI------ILNNMTNPDTAALALTYFTNKLKASKEVILYNVT 171
           D  +V R + D  ++   V       + + M  P    + L     +   + +   YN  
Sbjct: 190 DAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTL 249

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
           +   R+     +A ++FD+M   G +PD VTF++L+         ++A+E  + M   GC
Sbjct: 250 ISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGC 309

Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
            P  +TY+S+I +Y + G +E A  L      +  + D   ++TLI     AG  D  + 
Sbjct: 310 PPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIV 369

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMG-RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            Y+EM   G KPN+ TYN L+   G R K P ++  ++ E+   G  P+  T+ +LL  +
Sbjct: 370 EYDEMVRNGCKPNLCTYNALIKMHGVRGKFP-EMMAVFDELRSAGFVPDIVTWNTLLAVF 428

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
           G+     +   V++EMK+ G       Y +L++  +  G  D A +I++ M  +    PD
Sbjct: 429 GQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEA-GIYPD 487

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             T++++++  +  G+  +AE +F EM E   +P+ +  +SL+  Y  A+R D +
Sbjct: 488 VSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKM 542



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 165/347 (47%), Gaps = 3/347 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP-NKAVEWFERM 226
           Y   +  F +      A  +F  M+D GV+P  VT++ ++       +P  + VE    M
Sbjct: 175 YTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASM 234

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G  PD  TY+++I    R    + A  ++D  +   +  D   F++L+ +YG A   
Sbjct: 235 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRH 294

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  + V +EM+ +G  P+++TYN+L+ +  +     Q   + +EM   G+ P+  TY +L
Sbjct: 295 DEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTL 354

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +    RA   +  +  Y EM   G + ++  YN L+ M    G   E   +F++++S+  
Sbjct: 355 ISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSA-G 413

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             PD  T+++++ +    G  SE   +F EM +AG+ P      SLI  Y +    D  +
Sbjct: 414 FVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAM 473

Query: 467 RALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 512
           +   R+ E GI PD      +L+ + +  + E+  KL   +E+ + K
Sbjct: 474 QIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCK 520



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 149/305 (48%), Gaps = 4/305 (1%)

Query: 179 RDLDKAERLFDD--MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           R + +A RL +   +LD    PD   ++ L+S          AV  F RM   G  P  +
Sbjct: 149 RVMARAGRLAEASALLDAAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIV 208

Query: 237 TYSSMIDAYGR-AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           TY+ ++  Y + A   +    L    +      D   ++TLI        +     V++E
Sbjct: 209 TYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDE 268

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           MKA G +P+ +T+N+LLD  G+A+R  +   + +EM   G  P+  TY SL+ +Y +   
Sbjct: 269 MKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGL 328

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            E  +++ +EM+ KG++  V  Y TL++     G  D A   +++M  +  C+P+  T++
Sbjct: 329 LEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRN-GCKPNLCTYN 387

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           ++I +   RGK  E  A+F+E+  AGF P++    +L+  +G+     +V      + + 
Sbjct: 388 ALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKA 447

Query: 476 GITPD 480
           G  P+
Sbjct: 448 GYIPE 452



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 136/314 (43%), Gaps = 44/314 (14%)

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           ++ I    RAG +  A  L D A       D  A++ L+  +  AG F   + V+  M  
Sbjct: 145 ATAIRVMARAGRLAEASALLDAAPGP----DAGAYTALVSAFSRAGRFRDAVAVFRRMVD 200

Query: 299 IGVKPNMITYNNLLDTMGRAKRPW------------------------------------ 322
            GV+P ++TYN +L    +   PW                                    
Sbjct: 201 SGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYK 260

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +   ++ EM  +G  P+  T+ SLL  YG+AR  ++ + V +EM+  G   SV  YN+L+
Sbjct: 261 EAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLI 320

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
           +     G  ++A  + ++M+  +  +PD  T++++I+     GK+  A   ++EM+  G 
Sbjct: 321 SSYVKDGLLEQAVALKQEME-VKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGC 379

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 502
           +PNL    +LI+ +G   +  +++   + L   G  PD      LL V  Q     L   
Sbjct: 380 KPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQN---GLDSE 436

Query: 503 VECVEKSNSKLGYV 516
           V  V K   K GY+
Sbjct: 437 VSGVFKEMKKAGYI 450



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 155/350 (44%), Gaps = 36/350 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +K+        +   +FD++   G  PD VT++TL++    N L ++    F+ M 
Sbjct: 386 YNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMK 445

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P+  TY S+I +Y R G  ++A  +Y R        D + ++ ++      G ++
Sbjct: 446 KAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWE 505

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-------------------PWQVKTI- 327
               ++ EM+    KP+  +Y++LL     AKR                    W VKT+ 
Sbjct: 506 QAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLV 565

Query: 328 ---------------YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                          + E+     S + N   +++  YG+ R       +   MKE  + 
Sbjct: 566 LVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAIN 625

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
           LS   YN+L+ M + +G  ++   I  ++KSS   +PD ++++++I     +G++ EA  
Sbjct: 626 LSAATYNSLMHMYSRLGDCEKCENILTEIKSS-GVRPDRYSYNTVIYAYGRKGQMKEASR 684

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           +F+EM  +G +P++      ++ Y      ++ +  +  +   G  P++R
Sbjct: 685 LFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNER 734



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 109/227 (48%), Gaps = 3/227 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERM 226
           Y+  +  +   + LDK + L DD+    ++P N    TL+   +++NNL  +A + F  +
Sbjct: 526 YSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLA-EAEKAFLEL 584

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
               C  D    ++M+  YG+   V     +    +     +    +++L+ +Y   G+ 
Sbjct: 585 RQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDC 644

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           + C N+  E+K+ GV+P+  +YN ++   GR  +  +   ++ EM  +GL P+  TY   
Sbjct: 645 EKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIF 704

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTD 392
           +++Y      E+ + + R M  +G + +   YN+++   C +   TD
Sbjct: 705 VKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTD 751


>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g18900-like [Cucumis sativus]
          Length = 874

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/537 (22%), Positives = 227/537 (42%), Gaps = 37/537 (6%)

Query: 148 AALALTYFTNKL-KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
            AL   Y+  +L +   +   Y   + +  + +      +L D M+  G +P+ VT++ +
Sbjct: 361 VALGFFYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRI 420

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
           I      N    AV  F++M   GC+PD +TY ++ID + ++G +++A G+Y++ ++   
Sbjct: 421 IHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGL 480

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             D   +S +I   G AG+ +    ++  M   G  PN++TYN ++    +A+       
Sbjct: 481 TPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALK 540

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +Y++M  +G  P+  TY  ++   G   + E+   ++ EM++K       +Y  L+ +  
Sbjct: 541 LYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWG 600

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G   +A+E +  M  +   +P+  T +S+++      ++S+A  +   ML  G +P+L
Sbjct: 601 KSGNVQKAWEWYHAMLKA-GLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSL 659

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 506
              T L+ C   AQ                 T D  FC  L+ V        L  L    
Sbjct: 660 QTYTLLLSCCTDAQ-----------------TNDMGFCCELMQVTGHPAHTFLVSLPSAG 702

Query: 507 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENA 566
               +   ++ K L               +L +S  ++ K+   + ++D      L E A
Sbjct: 703 PNGQNVRDHMSKFL---------------DLMHSEDRESKRGLVDAVVDFLHKSGLKEEA 747

Query: 567 CKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPP 625
             + E  +   VY D ++ +S   W ++L  +S G A+TAL   +    + L      P 
Sbjct: 748 GCVWEAAMQKNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSRTLAWFRQQLLLSGVGPS 807

Query: 626 LLGINTGHGKH-KYSDKGLA-SVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLE 680
            + I TG G+  K +   L     +  L   + PF       G F+        WL 
Sbjct: 808 RIDIVTGWGRRSKVTGSSLVRQAVQDLLSIFSFPFFTENGNSGCFVGCGEPLSRWLH 864



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 122/285 (42%), Gaps = 9/285 (3%)

Query: 120 FSVLRCLGDDFLEQDC---VIILNNMTNPDTAALALTYFTNKLKASKEV------ILYNV 170
           F+ +  L D  ++  C   V+  N + +    A  L    N  K  +E       + Y  
Sbjct: 395 FAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCT 454

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
            + +  K   LD A  +++ M D G+ PD  T+S +I+C       N A   F RM   G
Sbjct: 455 LIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEG 514

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           C P+ +TY+ MI    +A N E+A  LY   +   +  D   +  ++++ G  G  +   
Sbjct: 515 CVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAE 574

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            ++ EM+     P+   Y  L+D  G++    +    Y  M   GL PN  T  SLL A+
Sbjct: 575 GIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAF 634

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
            R     D   + + M   G++ S+  Y  LL+ C D    D  F
Sbjct: 635 LRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTNDMGF 679


>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Cucumis sativus]
          Length = 874

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/544 (21%), Positives = 225/544 (41%), Gaps = 51/544 (9%)

Query: 148 AALALTYFTNKL-KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
            AL   Y+  +L +   +   Y   + +  + +      +L D M+  G +P+ VT++ +
Sbjct: 361 VALGFFYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRI 420

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
           I      N    AV  F++M   GC+PD +TY ++ID + ++G +++A G+Y++ ++   
Sbjct: 421 IHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGL 480

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             D   +S +I   G AG+ +    ++  M   G  PN++TYN ++    +A+       
Sbjct: 481 TPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALK 540

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +Y++M  +G  P+  TY  ++   G   + E+   ++ EM++K                 
Sbjct: 541 LYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKK----------------- 583

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
                              N  PD   +  ++ +    G V +A   ++ ML+AG +PN+
Sbjct: 584 -------------------NWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNV 624

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 506
               SL+  + +  +  D  + L  +   G+ P  +    LL+  T     ++G   E +
Sbjct: 625 PTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTNDMGFCCELM 684

Query: 507 EKSNSKLGYVVKLLLEEQDIEG-------DFKKEATELFNSISKDVKKAYCNCLIDLCVN 559
           + +    G+     L      G       D   +  +L +S  ++ K+   + ++D    
Sbjct: 685 QVT----GHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVDFLHK 740

Query: 560 LNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALE 618
             L E A  + E  +   VY D ++ +S   W ++L  +S G A+TAL   +    + L 
Sbjct: 741 SGLKEEAGCVWEAAMQKNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSRTLAWFRQQLL 800

Query: 619 SGEEFPPLLGINTGHGKH-KYSDKGLA-SVFESHLKELNAPFHDSPDKVGWFLTTEAAAK 676
                P  + I TG G+  K +   L     +  L   + PF       G F+       
Sbjct: 801 LSGVGPSRIDIVTGWGRRSKVTGSSLVRQAVQDLLSIFSFPFFTENGNSGCFVGCGEPLS 860

Query: 677 SWLE 680
            WL 
Sbjct: 861 RWLH 864



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 122/285 (42%), Gaps = 9/285 (3%)

Query: 120 FSVLRCLGDDFLEQDC---VIILNNMTNPDTAALALTYFTNKLKASKEV------ILYNV 170
           F+ +  L D  ++  C   V+  N + +    A  L    N  K  +E       + Y  
Sbjct: 395 FAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCT 454

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
            + +  K   LD A  +++ M D G+ PD  T+S +I+C       N A   F RM   G
Sbjct: 455 LIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEG 514

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           C P+ +TY+ MI    +A N E+A  LY   +   +  D   +  ++++ G  G  +   
Sbjct: 515 CVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAE 574

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            ++ EM+     P+   Y  L+D  G++    +    Y  M   GL PN  T  SLL A+
Sbjct: 575 GIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAF 634

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
            R     D   + + M   G++ S+  Y  LL+ C D    D  F
Sbjct: 635 LRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTNDMGF 679


>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 857

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 206/468 (44%), Gaps = 18/468 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  ++ F K   L+K   L  +M   G  PD  +++ L+          +A+  F +M 
Sbjct: 278 YSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQ 337

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + GC  +A TYS +++ YG+ G  +    L+   +      D   ++ LI+++G  G F 
Sbjct: 338 AAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFK 397

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + ++ +M    V+PNM TY  L+   G+       K I   M + G+ P+   Y  ++
Sbjct: 398 EVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVI 457

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A+G+A   E+ L ++  M E G   +V  YN+L+   A  G   EA  I   M  S   
Sbjct: 458 EAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNES-GL 516

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           + D  +F+ +I      G+  EA   + EM +A  EPN   L +++  Y  A   D+   
Sbjct: 517 KRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEGEE 576

Query: 468 ALNRLPELGITPDDRFCGCLLNVM---TQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQ 524
               +   GI P    C C++  +        +    +   +    S +  V+      Q
Sbjct: 577 QFQEIKASGILPS-VMCYCMMLALYAKNDRLNDAYNLIDAMITMRVSDIHQVIG-----Q 630

Query: 525 DIEGDFKKEAT--------ELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 576
            I+GDF  E+         +  NS    +   + N L++    +   E A ++L      
Sbjct: 631 MIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLEALWCMFQRERAARVLNEASKR 690

Query: 577 EVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFP 624
            ++ ++  +S   WS+ +  +S G ALTAL +W+N++ +   +G++ P
Sbjct: 691 GLFPELFRKSKLVWSVDVHRMSEGGALTALSVWLNNVHEMSMTGDDLP 738



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 178/355 (50%), Gaps = 16/355 (4%)

Query: 134 DCVIILNNMTN-PDTAALA--LTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDD 190
           D   ++N +T  P   ++A  L  F NKL  +     + +  K F +  D  ++ RLF  
Sbjct: 68  DVETLINRLTALPPRGSIARCLDPFKNKLSLND----FALVFKEFAQRGDWQRSLRLFKY 123

Query: 191 MLDRGV--KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
           M  R +  KP+    + +I+      L +K  E F+ MPS G      +Y+++I+AYGR 
Sbjct: 124 M-QRQIWCKPNEHIHTIMITLLGREGLLDKCREVFDEMPSNGVVRTVYSYTAIINAYGRN 182

Query: 249 GNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNM 305
           G    +  L +  + E  R+ P+   ++T+I      G +++G L ++ EM+  G++P++
Sbjct: 183 GQFHASLELLNGMKQE--RVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDV 240

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           ITYN LL          + + +++ M ++G+ P+ NTY+ L++ +G+    E    + RE
Sbjct: 241 ITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLRE 300

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M+  G    +T YN LL   A++G   EA  +F  M+++  C  ++ T+S ++ +    G
Sbjct: 301 MECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAA-GCVANAATYSVLLNLYGKHG 359

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  +   +F EM  +  +P+      LIQ +G+     +VV   + + E  + P+
Sbjct: 360 RYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPN 414



 Score = 47.4 bits (111), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 47/252 (18%), Positives = 96/252 (38%), Gaps = 15/252 (5%)

Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD 180
            V+   G   L ++ +++ N M              N++ ++  V  YN  +  F +   
Sbjct: 455 GVIEAFGQAALYEEALVMFNTM--------------NEVGSNPTVETYNSLIHAFARGGL 500

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
             +AE +   M + G+K D  +F+ +I   R      +AV+ +  M    C+P+ LT  +
Sbjct: 501 YKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEA 560

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           ++  Y  AG V+     +   +          +  ++ LY      +   N+ + M  + 
Sbjct: 561 VLSIYCSAGLVDEGEEQFQEIKASGILPSVMCYCMMLALYAKNDRLNDAYNLIDAMITMR 620

Query: 301 VKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           V         ++      +  WQ V+ ++ ++   G       Y +LL A       E  
Sbjct: 621 VSDIHQVIGQMIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLEALWCMFQRERA 680

Query: 360 LSVYREMKEKGM 371
             V  E  ++G+
Sbjct: 681 ARVLNEASKRGL 692


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 156/288 (54%), Gaps = 1/288 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +N  + V+ K R  D+A  +  +M   G  P  VT+++LIS    + L  +AV   + 
Sbjct: 261 VTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQE 320

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  PD +TY+++I    RAG ++ A   YD       + +   ++ LIK++G  G 
Sbjct: 321 MEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGK 380

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F   + V++E ++ G  P+++T+N LL   G+     +V  ++KEM   G  P  +TY S
Sbjct: 381 FPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS 440

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ +Y R    +  + +Y+ M E G+   V+ YN +L+  A  G  ++A ++F +M+   
Sbjct: 441 LISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME-ER 499

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           +C+PD +++SS++   +   ++ + +A+ +++     EP+ +++ +L+
Sbjct: 500 DCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLV 547



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 170/353 (48%), Gaps = 9/353 (2%)

Query: 118 DVFSVLRCLGDDFLEQDCVI------ILNNMTNPDTAALALTYFTNKLKASKEVILYNVT 171
           D  +V R + D  ++   V       + + M  P    + L     +   + +   YN  
Sbjct: 172 DAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTL 231

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
           +   R+     +A ++FD+M   G +PD VTF++L+         ++A+E  + M   GC
Sbjct: 232 ISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGC 291

Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
            P  +TY+S+I +Y + G +E A  L      +  + D   ++TLI     AG  D  + 
Sbjct: 292 PPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIV 351

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMG-RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            Y+EM   G KPN+ TYN L+   G R K P ++  ++ E    G  P+  T+ +LL  +
Sbjct: 352 EYDEMVRNGCKPNLCTYNALIKMHGVRGKFP-EMMAVFDEFRSAGFVPDIVTWNTLLAVF 410

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
           G+     +   V++EMK+ G       Y +L++  +  G  D A +I++ M  +    PD
Sbjct: 411 GQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEA-GIYPD 469

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
             T++++++  +  G+  +AE +F EM E   +P+ +  +SL+  Y  A+R D
Sbjct: 470 VSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLD 522



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 164/347 (47%), Gaps = 3/347 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP-NKAVEWFERM 226
           Y   +  F +      A  +F  M+D GV+P  VT++ ++       +P  + VE    M
Sbjct: 157 YTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASM 216

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G  PD  TY+++I    R    + A  ++D  +   +  D   F++L+ +YG A   
Sbjct: 217 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRH 276

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  + V +EM+ +G  P+++TYN+L+ +  +     Q   + +EM   G+ P+  TY +L
Sbjct: 277 DEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTL 336

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +    RA   +  +  Y EM   G + ++  YN L+ M    G   E   +F++ +S+  
Sbjct: 337 ISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSA-G 395

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             PD  T+++++ +    G  SE   +F EM +AG+ P      SLI  Y +    D  +
Sbjct: 396 FVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAM 455

Query: 467 RALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 512
           +   R+ E GI PD      +L+ + +  + E+  KL   +E+ + K
Sbjct: 456 QIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCK 502



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 148/305 (48%), Gaps = 4/305 (1%)

Query: 179 RDLDKAERLFDD--MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           R + +A RL +   +LD    PD   ++ L+S          AV  F RM   G  P  +
Sbjct: 131 RVMARAGRLAEASALLDAAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIV 190

Query: 237 TYSSMIDAYGR-AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           TY+ ++  Y + A   +    L    +      D   ++TLI        +     V++E
Sbjct: 191 TYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDE 250

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           MKA G +P+ +T+N+LLD  G+A+R  +   + +EM   G  P+  TY SL+ +Y +   
Sbjct: 251 MKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGL 310

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            E  +++ +EM+ KGM+  V  Y TL++     G  D A   +++M  +  C+P+  T++
Sbjct: 311 LEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRN-GCKPNLCTYN 369

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           ++I +   RGK  E  A+F+E   AGF P++    +L+  +G+     +V      + + 
Sbjct: 370 ALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKA 429

Query: 476 GITPD 480
           G  P+
Sbjct: 430 GYIPE 434



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 154/350 (44%), Gaps = 36/350 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +K+        +   +FD+    G  PD VT++TL++    N L ++    F+ M 
Sbjct: 368 YNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMK 427

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P+  TY S+I +Y R G  ++A  +Y R        D + ++ ++      G ++
Sbjct: 428 KAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWE 487

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-------------------PWQVKTI- 327
               ++ EM+    KP+  +Y++LL     AKR                    W VKT+ 
Sbjct: 488 QAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLV 547

Query: 328 ---------------YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                          + E+     S + N   +++  YG+ R       +   MKE  + 
Sbjct: 548 LVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAIN 607

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
           LS   YN+L+ M + +G  ++   I  ++KSS   +PD ++++++I     +G++ EA  
Sbjct: 608 LSAATYNSLMHMYSRLGDCEKCENILTEIKSS-GVRPDRYSYNTVIYAYGRKGQMKEASR 666

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           +F+EM  +G +P++      ++ Y      ++ +  +  +   G  P++R
Sbjct: 667 LFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNER 716



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 135/314 (42%), Gaps = 44/314 (14%)

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           ++ I    RAG +  A  L D A       D  A++ L+  +  AG F   + V+  M  
Sbjct: 127 ATAIRVMARAGRLAEASALLDAAPGP----DAGAYTALVSAFSRAGRFRDAVAVFRRMVD 182

Query: 299 IGVKPNMITYNNLLDTMGRAKRPW------------------------------------ 322
            GV+P ++TYN +L    +   PW                                    
Sbjct: 183 SGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYK 242

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +   ++ EM  +G  P+  T+ SLL  YG+AR  ++ + V +EM+  G   SV  YN+L+
Sbjct: 243 EAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLI 302

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
           +     G  ++A  + ++M+  +  +PD  T++++I+     GK+  A   ++EM+  G 
Sbjct: 303 SSYVKDGLLEQAVALKQEME-VKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGC 361

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 502
           +PNL    +LI+ +G   +  +++   +     G  PD      LL V  Q     L   
Sbjct: 362 KPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQN---GLDSE 418

Query: 503 VECVEKSNSKLGYV 516
           V  V K   K GY+
Sbjct: 419 VSGVFKEMKKAGYI 432



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 109/227 (48%), Gaps = 3/227 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERM 226
           Y+  +  +   + LDK + L DD+    ++P N    TL+   +++NNL  +A + F  +
Sbjct: 508 YSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLA-EAEKAFLEL 566

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
               C  D    ++M+  YG+   V     +    +     +    +++L+ +Y   G+ 
Sbjct: 567 RQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDC 626

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           + C N+  E+K+ GV+P+  +YN ++   GR  +  +   ++ EM  +GL P+  TY   
Sbjct: 627 EKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIF 686

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTD 392
           +++Y      E+ + + R M  +G + +   YN+++   C +   TD
Sbjct: 687 VKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTD 733


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 166/334 (49%), Gaps = 4/334 (1%)

Query: 165 VILYNVTMKVFRKCR-DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++ YNV + V+ K      +   L D M + G++ D  T++TLISC R   L  +A + F
Sbjct: 220 LVTYNVVLHVYSKMSVPWKEVVVLVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMF 279

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M + G +PD +T++S++D YG+A   E A G+  +  N         +++LI  Y   
Sbjct: 280 DEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKD 339

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +  L + +EM+  G+KP+++TY  L+  + R  +       Y EM  NG SPN  TY
Sbjct: 340 GLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTY 399

Query: 344 ASLLRAYG-RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
            +L++ +G R ++ E  + V+ +++  G    V  +NTLLA+    G   E   +F++MK
Sbjct: 400 NALIKMHGVRGKFTE-MMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMK 458

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            +    P+  T+ S+I+  S  G   +A  ++  M+EAG  P++    +++    +  R 
Sbjct: 459 KA-GYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRW 517

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
               +    + +    PD+     LL+      K
Sbjct: 518 VQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKK 551



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 167/329 (50%), Gaps = 14/329 (4%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +N  + V+ K R  ++A  +   M + G  P  VT+++LIS    + L  +A+E  + 
Sbjct: 292 VTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQE 351

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY-DRARNEKWRIDPN--AFSTLIKLYGT 282
           M   G  PD +TY+++I    R G ++ A   Y +  RN      PN   ++ LIK++G 
Sbjct: 352 MEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNG---CSPNLCTYNALIKMHGV 408

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G F   + V++++++ G  P+++T+N LL   G+     +V  ++KEM   G  P  +T
Sbjct: 409 RGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDT 468

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y SL+ +Y R    +  + +Y+ M E G+   ++ YN +L+  A  G   +A ++F +M+
Sbjct: 469 YVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEME 528

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
              +C+PD  ++SS++   +   K+ + +A+  ++     EP+ +++ +L+    K    
Sbjct: 529 D-RDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSL 587

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVM 491
            +  +A   L         R C   +NV+
Sbjct: 588 SETEKAFQELRR-------RRCSLDINVL 609



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 134/284 (47%), Gaps = 37/284 (13%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLY---------------------------------- 258
           PDA  Y++++  + RAG    A  ++                                  
Sbjct: 183 PDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVV 242

Query: 259 --DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
             D  + +   +D   ++TLI      G +     +++EMKA G +P+ +T+N+LLD  G
Sbjct: 243 LVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYG 302

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +A+R  +   + K+M + G +P+  TY SL+ AY +    E+ L + +EM+ +GM+  V 
Sbjct: 303 KARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVV 362

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            Y TL++    +G  D A   + +M  +  C P+  T++++I +   RGK +E   +F++
Sbjct: 363 TYTTLISGLDRIGKIDAALATYSEMVRN-GCSPNLCTYNALIKMHGVRGKFTEMMIVFDD 421

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  AG+ P++    +L+  +G+     +V      + + G  P+
Sbjct: 422 LRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPE 465



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 162/386 (41%), Gaps = 71/386 (18%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +  + K   L++A  L  +M  RG+KPD VT++TLIS        + A+  + 
Sbjct: 326 VVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYS 385

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT-- 282
            M   GC P+  TY+++I  +G  G       ++D  R+  +  D   ++TL+ ++G   
Sbjct: 386 EMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNG 445

Query: 283 ---------------------------------AGNFDGCLNVYEEMKAIGVKPNMITYN 309
                                             G FD  + +Y+ M   G+ P++ TYN
Sbjct: 446 LDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYN 505

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR------------YGE 357
            +L  + R  R  Q + ++ EM D    P+  +Y+SLL AY  A+            Y +
Sbjct: 506 AVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQ 565

Query: 358 -----------------------DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
                                  +T   ++E++ +   L + + N ++++        + 
Sbjct: 566 RIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKV 625

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            E+   MK + +    + T++S++ + S  G   + EA+  E+  +G  P+ +   ++I 
Sbjct: 626 EEVLTLMKEN-SINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIY 684

Query: 455 CYGKAQRTDDVVRALNRLPELGITPD 480
            YG+  +  +  R  + +   G+ PD
Sbjct: 685 AYGRKGQMKEASRLFSEMKCSGVKPD 710



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 125/284 (44%), Gaps = 40/284 (14%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW------ 322
           D +A++ L+  +  AG F   + V+  M   GV+P ++TYN +L    +   PW      
Sbjct: 184 DASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVVL 243

Query: 323 ------------------------------QVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
                                         +   ++ EM   G  P+  T+ SLL  YG+
Sbjct: 244 VDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGK 303

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
           AR  E+ + V ++M+  G   SV  YN+L++     G  +EA E+ ++M+     +PD  
Sbjct: 304 ARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEME-FRGMKPDVV 362

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T++++I+     GK+  A A ++EM+  G  PNL    +LI+ +G   +  +++   + L
Sbjct: 363 TYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDL 422

Query: 473 PELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYV 516
              G  PD      LL V  Q     L   V  V K   K GY+
Sbjct: 423 RSAGYVPDVVTWNTLLAVFGQN---GLDSEVSGVFKEMKKAGYI 463



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 159/331 (48%), Gaps = 13/331 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +N  + VF +     +   +F +M   G  P+  T+ +LIS      L ++A+E +
Sbjct: 430 DVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIY 489

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           +RM   G  PD  TY++++ A  R G    A  L+    +   + D  ++S+L+  Y  A
Sbjct: 490 KRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANA 549

Query: 284 GNFDGCLNVYEEMKAIGVKPN------MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
              D    + E++ A  ++P+      ++  NN ++++   ++ +Q      E+     S
Sbjct: 550 KKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQ------ELRRRRCS 603

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
            + N   +++  YG+ +  +    V   MKE  +  S   YN+L+ M + +G  ++   I
Sbjct: 604 LDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAI 663

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
             ++KSS   +PD ++++++I     +G++ EA  +F+EM  +G +P++      I+ Y 
Sbjct: 664 LTEIKSS-GMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYV 722

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
                ++ +  +  L   G  P++R    +L
Sbjct: 723 ANLMFEEAIDLVRYLVAQGCKPNERTYNSIL 753



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 144/312 (46%), Gaps = 7/312 (2%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           + +C   D+A  ++  M++ G+ PD  T++ ++S         +A + F  M    C PD
Sbjct: 476 YSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPD 535

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNV 292
            L+YSS++ AY  A  ++    L +    +  RI+P+ +   TL+ +     +       
Sbjct: 536 ELSYSSLLHAYANAKKLDKMKALSEDIYAQ--RIEPHNWLVKTLVLVNNKVNSLSETEKA 593

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           ++E++      ++   N ++   G+ K   +V+ +   M +N ++ +  TY SL+  Y R
Sbjct: 594 FQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSR 653

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
               E   ++  E+K  GM+     YNT++      G   EA  +F +MK S   +PD  
Sbjct: 654 LGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCS-GVKPDIV 712

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T++  I          EA  +   ++  G +PN     S+++ Y +  R  +    L+ L
Sbjct: 713 TYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSILEGYCRHGRMVEAKSFLSNL 772

Query: 473 PEL--GITPDDR 482
           P++  GI+ +++
Sbjct: 773 PKIYPGISKEEK 784



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 79/143 (55%)

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
           +P+ + Y +L+  + RA    D ++V+R M + G+Q ++  YN +L + + +    +   
Sbjct: 182 APDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVV 241

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           +  D    +  + D +T++++I+ C  RG   EA  MF+EM  AGFEP+     SL+  Y
Sbjct: 242 VLVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVY 301

Query: 457 GKAQRTDDVVRALNRLPELGITP 479
           GKA+R ++ +  L ++   G TP
Sbjct: 302 GKARRHEEAIGVLKKMENAGCTP 324



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 109/232 (46%), Gaps = 7/232 (3%)

Query: 99  YNSLVKLAAD---LDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYF 155
           Y+SL+   A+   LD   A  +D+++  R    ++L +  V++ N + +      A    
Sbjct: 539 YSSLLHAYANAKKLDKMKALSEDIYA-QRIEPHNWLVKTLVLVNNKVNSLSETEKAFQEL 597

Query: 156 TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNN 214
             + + S ++ + N  + ++ K + + K E +   M +  +     T+++L+   +R+ +
Sbjct: 598 RRR-RCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGD 656

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
              K       + S G  PD  +Y+++I AYGR G ++ A  L+   +    + D   ++
Sbjct: 657 C-EKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYN 715

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             IK Y     F+  +++   + A G KPN  TYN++L+   R  R  + K+
Sbjct: 716 IFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSILEGYCRHGRMVEAKS 767


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 172/340 (50%), Gaps = 3/340 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ + +  K   L+ A  + D M D G+ P+ +T + ++         + A   FE + 
Sbjct: 412 YNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLD 471

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C PDA+TY S+I+  GR G V+ A+ LY++  +     +   +++LI+ +   G  +
Sbjct: 472 HKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKE 531

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +Y EM  +G  P+++  N  +D + +A    + + +++E+ + G  P+  +Y  L+
Sbjct: 532 DGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILI 591

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +A +  +   ++  MKE+G  L    YNT++      G  ++A+++ E+MK+  + 
Sbjct: 592 HGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGH- 650

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P   T+ S+I   +   ++ EA  +F E    G E N+ + +SLI  +GK  R D+   
Sbjct: 651 EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYL 710

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
            +  L + G+TP+     CLL+ + +   EE+ + + C +
Sbjct: 711 IMEELMQKGLTPNVYTWNCLLDALVKA--EEISEALVCFQ 748



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 156/319 (48%), Gaps = 2/319 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+LYNV +  F K   +D A + F +M   G+  D+VT++++I      +  N+AVE F
Sbjct: 269 DVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELF 328

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M      P A  Y++MI  YG AG  E A+ L +R R +       +++ ++   G  
Sbjct: 329 EHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRK 388

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D  L  +EEMK   + PN+ TYN ++D + +A +      +   M D GL PN  T 
Sbjct: 389 GQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITV 447

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++    +A+  +D  S++  +  K  +     Y +L+      G  DEA++++E M  
Sbjct: 448 NIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLD 507

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           + N  P++  ++S+I      G+  +   ++NEML  G  P+L +L + + C  KA   +
Sbjct: 508 A-NQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIE 566

Query: 464 DVVRALNRLPELGITPDDR 482
                   +  LG  PD R
Sbjct: 567 KGRALFQEIKNLGFIPDAR 585



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 199/423 (47%), Gaps = 17/423 (4%)

Query: 152 LTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC 209
           LT F    +L  +  V L+   ++VF +   +D A  L D+M    ++PD V ++  I C
Sbjct: 220 LTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDC 279

Query: 210 ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
                  + A + F  M + G   D +TY+SMI    +A  +  A  L++     K    
Sbjct: 280 FGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPC 339

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
             A++T+I  YG AG F+   ++ E  +  G  P++++YN +L  +GR  +  +    ++
Sbjct: 340 AYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFE 399

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           EM  + + PN +TY  ++    +A   E  L V   MK+ G+  +V   N ++       
Sbjct: 400 EMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQ 458

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
             D+A  IFE +   + C+PD+ T+ S+I      G+V EA  ++ +ML+A   PN  V 
Sbjct: 459 RLDDACSIFEGL-DHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVY 517

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 509
           TSLI+ + K  R +D  +  N +  LG +PD       ++ + +  + E G+    + + 
Sbjct: 518 TSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGR---ALFQE 574

Query: 510 NSKLGYVVK----LLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLEN 565
              LG++       +L    ++  F  EA ELF ++ +        C++D      +++ 
Sbjct: 575 IKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQ------GCVLDTRAYNTVIDG 628

Query: 566 ACK 568
            CK
Sbjct: 629 FCK 631



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 153/316 (48%), Gaps = 3/316 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++Y   ++ F KC   +   +++++ML  G  PD +  +T + C        K    F+ 
Sbjct: 515 VVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQE 574

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           + + G  PDA +Y+ +I    +AG    A+ L+   + +   +D  A++T+I  +  +G 
Sbjct: 575 IKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGK 634

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    + EEMK  G +P ++TY +++D + +  R  +   +++E    G+  N   Y+S
Sbjct: 635 VNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSS 694

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  +G+    ++   +  E+ +KG+  +V  +N LL          EA   F+ MK  +
Sbjct: 695 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLK 754

Query: 406 NCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            C P+  T+S +I  +C  R K ++A   + EM + GF+PN+F  T++I    KA    +
Sbjct: 755 -CTPNYITYSILIHGLCKIR-KFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVE 812

Query: 465 VVRALNRLPELGITPD 480
                 +  E G   D
Sbjct: 813 ADTLFEKFKEKGGVAD 828



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 169/361 (46%), Gaps = 1/361 (0%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           +L  S +++L N  M    K  +++K   LF ++ + G  PD  +++ LI         +
Sbjct: 542 RLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAH 601

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +A E F  M   GC  D   Y+++ID + ++G V  A+ L +  + +        + ++I
Sbjct: 602 EAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVI 661

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
                    D    ++EE K+ G++ N++ Y++L+D  G+  R  +   I +E+   GL+
Sbjct: 662 DGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLT 721

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           PN  T+  LL A  +A    + L  ++ MK+     +   Y+ L+     +   ++AF  
Sbjct: 722 PNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVF 781

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           +++M+  +  +P+ +T+++MI+  +  G + EA+ +F +  E G   +  +  ++I+   
Sbjct: 782 WQEMQ-KQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLS 840

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVV 517
            A R  D  R        G +   + C  LL+ + +    E   +V  V +  +K  +  
Sbjct: 841 NANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIEQAAIVGAVLRETAKAQHAA 900

Query: 518 K 518
           +
Sbjct: 901 R 901



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 161/368 (43%), Gaps = 3/368 (0%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F K R L +A      M     +P    ++ LI     +   +  +  F++M   G   +
Sbjct: 175 FIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVN 234

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
              ++++I  + R G V+ A  L D  ++     D   ++  I  +G AG  D     + 
Sbjct: 235 VHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFH 294

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           EMKA G+  + +TY +++  + +A R  +   +++ M  N   P    Y +++  YG A 
Sbjct: 295 EMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAG 354

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             ED  S+    + KG   SV  YN +L+     G  DEA + FE+MK  ++  P+  T+
Sbjct: 355 KFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMK--KDAIPNLSTY 412

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + MI +    GK+  A  + + M +AG  PN+  +  ++    KAQR DD       L  
Sbjct: 413 NIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDH 472

Query: 475 LGITPDD-RFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE 533
               PD   +C  +  +      +E  KL E +  +N     VV   L     +   K++
Sbjct: 473 KTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKED 532

Query: 534 ATELFNSI 541
             +++N +
Sbjct: 533 GHKIYNEM 540



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 98/203 (48%), Gaps = 1/203 (0%)

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           A+++L+ +      F+    + EEM   G  P+  T   ++ +  ++++  +  T  + M
Sbjct: 132 AYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTM 191

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
                 P ++ Y +L+ A   +R  +  L+++++M+E G  ++V L+ TL+ + A  G  
Sbjct: 192 RKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRV 251

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           D A  + ++MKS+ + +PD   ++  I      GKV  A   F+EM   G   +    TS
Sbjct: 252 DAALSLLDEMKSN-SLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTS 310

Query: 452 LIQCYGKAQRTDDVVRALNRLPE 474
           +I    KA R ++ V     + +
Sbjct: 311 MIGVLCKADRLNEAVELFEHMDQ 333


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 156/288 (54%), Gaps = 1/288 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +N  + V+ K R  D+A  +  +M   G  P  VT+++LIS    + L  +AV   + 
Sbjct: 279 VTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQE 338

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  PD +TY+++I    RAG ++ A   YD       + +   ++ LIK++G  G 
Sbjct: 339 MEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGK 398

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F   + V++E ++ G  P+++T+N LL   G+     +V  ++KEM   G  P  +TY S
Sbjct: 399 FPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS 458

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ +Y R    +  + +Y+ M E G+   V+ YN +L+  A  G  ++A ++F +M+   
Sbjct: 459 LISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME-ER 517

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           +C+PD +++SS++   +   ++ + +A+ +++     EP+ +++ +L+
Sbjct: 518 DCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLV 565



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 170/353 (48%), Gaps = 9/353 (2%)

Query: 118 DVFSVLRCLGDDFLEQDCVI------ILNNMTNPDTAALALTYFTNKLKASKEVILYNVT 171
           D  +V R + D  ++   V       + + M  P    + L     +   + +   YN  
Sbjct: 190 DAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTL 249

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
           +   R+     +A ++FD+M   G +PD VTF++L+         ++A+E  + M   GC
Sbjct: 250 ISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGC 309

Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
            P  +TY+S+I +Y + G +E A  L      +  + D   ++TLI     AG  D  + 
Sbjct: 310 PPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIV 369

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMG-RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            Y+EM   G KPN+ TYN L+   G R K P ++  ++ E    G  P+  T+ +LL  +
Sbjct: 370 EYDEMVRNGCKPNLCTYNALIKMHGVRGKFP-EMMAVFDEFRSAGFVPDIVTWNTLLAVF 428

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
           G+     +   V++EMK+ G       Y +L++  +  G  D A +I++ M  +    PD
Sbjct: 429 GQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEA-GIYPD 487

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
             T++++++  +  G+  +AE +F EM E   +P+ +  +SL+  Y  A+R D
Sbjct: 488 VSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLD 540



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 164/347 (47%), Gaps = 3/347 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP-NKAVEWFERM 226
           Y   +  F +      A  +F  M+D GV+P  VT++ ++       +P  + VE    M
Sbjct: 175 YTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASM 234

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G  PD  TY+++I    R    + A  ++D  +   +  D   F++L+ +YG A   
Sbjct: 235 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRH 294

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  + V +EM+ +G  P+++TYN+L+ +  +     Q   + +EM   G+ P+  TY +L
Sbjct: 295 DEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTL 354

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +    RA   +  +  Y EM   G + ++  YN L+ M    G   E   +F++ +S+  
Sbjct: 355 ISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSA-G 413

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             PD  T+++++ +    G  SE   +F EM +AG+ P      SLI  Y +    D  +
Sbjct: 414 FVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAM 473

Query: 467 RALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 512
           +   R+ E GI PD      +L+ + +  + E+  KL   +E+ + K
Sbjct: 474 QIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCK 520



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 148/305 (48%), Gaps = 4/305 (1%)

Query: 179 RDLDKAERLFDD--MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           R + +A RL +   +LD    PD   ++ L+S          AV  F RM   G  P  +
Sbjct: 149 RVMARAGRLAEASALLDAAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIV 208

Query: 237 TYSSMIDAYGR-AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           TY+ ++  Y + A   +    L    +      D   ++TLI        +     V++E
Sbjct: 209 TYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDE 268

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           MKA G +P+ +T+N+LLD  G+A+R  +   + +EM   G  P+  TY SL+ +Y +   
Sbjct: 269 MKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGL 328

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            E  +++ +EM+ KGM+  V  Y TL++     G  D A   +++M  +  C+P+  T++
Sbjct: 329 LEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRN-GCKPNLCTYN 387

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           ++I +   RGK  E  A+F+E   AGF P++    +L+  +G+     +V      + + 
Sbjct: 388 ALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKA 447

Query: 476 GITPD 480
           G  P+
Sbjct: 448 GYIPE 452



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 154/350 (44%), Gaps = 36/350 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +K+        +   +FD+    G  PD VT++TL++    N L ++    F+ M 
Sbjct: 386 YNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMK 445

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P+  TY S+I +Y R G  ++A  +Y R        D + ++ ++      G ++
Sbjct: 446 KAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWE 505

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-------------------PWQVKTI- 327
               ++ EM+    KP+  +Y++LL     AKR                    W VKT+ 
Sbjct: 506 QAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLV 565

Query: 328 ---------------YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                          + E+     S + N   +++  YG+ R       +   MKE  + 
Sbjct: 566 LVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAIN 625

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
           LS   YN+L+ M + +G  ++   I  ++KSS   +PD ++++++I     +G++ EA  
Sbjct: 626 LSAATYNSLMHMYSRLGDCEKCENILTEIKSS-GVRPDRYSYNTVIYAYGRKGQMKEASR 684

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           +F+EM  +G +P++      ++ Y      ++ +  +  +   G  P++R
Sbjct: 685 LFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNER 734



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 135/314 (42%), Gaps = 44/314 (14%)

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           ++ I    RAG +  A  L D A       D  A++ L+  +  AG F   + V+  M  
Sbjct: 145 ATAIRVMARAGRLAEASALLDAAPGP----DAGAYTALVSAFSRAGRFRDAVAVFRRMVD 200

Query: 299 IGVKPNMITYNNLLDTMGRAKRPW------------------------------------ 322
            GV+P ++TYN +L    +   PW                                    
Sbjct: 201 SGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYK 260

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +   ++ EM  +G  P+  T+ SLL  YG+AR  ++ + V +EM+  G   SV  YN+L+
Sbjct: 261 EAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLI 320

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
           +     G  ++A  + ++M+  +  +PD  T++++I+     GK+  A   ++EM+  G 
Sbjct: 321 SSYVKDGLLEQAVALKQEME-VKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGC 379

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 502
           +PNL    +LI+ +G   +  +++   +     G  PD      LL V  Q     L   
Sbjct: 380 KPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQN---GLDSE 436

Query: 503 VECVEKSNSKLGYV 516
           V  V K   K GY+
Sbjct: 437 VSGVFKEMKKAGYI 450



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 109/227 (48%), Gaps = 3/227 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERM 226
           Y+  +  +   + LDK + L DD+    ++P N    TL+   +++NNL  +A + F  +
Sbjct: 526 YSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLA-EAEKAFLEL 584

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
               C  D    ++M+  YG+   V     +    +     +    +++L+ +Y   G+ 
Sbjct: 585 RQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDC 644

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           + C N+  E+K+ GV+P+  +YN ++   GR  +  +   ++ EM  +GL P+  TY   
Sbjct: 645 EKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIF 704

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTD 392
           +++Y      E+ + + R M  +G + +   YN+++   C +   TD
Sbjct: 705 VKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTD 751


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 172/340 (50%), Gaps = 3/340 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ + +  K   L+ A  + D M D G+ P+ +T + ++         + A   FE + 
Sbjct: 412 YNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLD 471

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C PDA+TY S+I+  GR G V+ A+ LY++  +     +   +++LI+ +   G  +
Sbjct: 472 HKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKE 531

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +Y EM  +G  P+++  N  +D + +A    + + +++E+ + G  P+  +Y  L+
Sbjct: 532 DGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILI 591

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +A +  +   ++  MKE+G  L    YNT++      G  ++A+++ E+MK+  + 
Sbjct: 592 HGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGH- 650

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P   T+ S+I   +   ++ EA  +F E    G E N+ + +SLI  +GK  R D+   
Sbjct: 651 EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYL 710

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
            +  L + G+TP+     CLL+ + +   EE+ + + C +
Sbjct: 711 IMEELMQKGLTPNVYTWNCLLDALVKA--EEISEALVCFQ 748



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 156/319 (48%), Gaps = 2/319 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+LYNV +  F K   +D A + F +M   G+  D+VT++++I      +  N+AVE F
Sbjct: 269 DVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELF 328

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M      P A  Y++MI  YG AG  E A+ L +R R +       +++ ++   G  
Sbjct: 329 EHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRK 388

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D  L  +EEMK   + PN+ TYN ++D + +A +      +   M D GL PN  T 
Sbjct: 389 GQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITV 447

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++    +A+  +D  S++  +  K  +     Y +L+      G  DEA++++E M  
Sbjct: 448 NIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLD 507

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           + N  P++  ++S+I      G+  +   ++NEML  G  P+L +L + + C  KA   +
Sbjct: 508 A-NQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIE 566

Query: 464 DVVRALNRLPELGITPDDR 482
                   +  LG  PD R
Sbjct: 567 KGRALFQEIKNLGFIPDAR 585



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 200/423 (47%), Gaps = 17/423 (4%)

Query: 152 LTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC 209
           LT F    +L  +  V L+   ++VF +   +D A  L D+M    ++PD V ++  I C
Sbjct: 220 LTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDC 279

Query: 210 ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
                  + A ++F  M + G   D +TY+SMI    +A  +  A  L++     K    
Sbjct: 280 FGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPC 339

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
             A++T+I  YG AG F+   ++ E  +  G  P++++YN +L  +GR  +  +    ++
Sbjct: 340 AYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFE 399

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           EM  + + PN +TY  ++    +A   E  L V   MK+ G+  +V   N ++       
Sbjct: 400 EMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQ 458

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
             D+A  IFE +   + C+PD+ T+ S+I      G+V EA  ++ +ML+A   PN  V 
Sbjct: 459 RLDDACSIFEGL-DHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVY 517

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 509
           TSLI+ + K  R +D  +  N +  LG +PD       ++ + +  + E G+    + + 
Sbjct: 518 TSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGR---ALFQE 574

Query: 510 NSKLGYVVK----LLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLEN 565
              LG++       +L    ++  F  EA ELF ++ +        C++D      +++ 
Sbjct: 575 IKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQ------GCVLDTRAYNTVIDG 628

Query: 566 ACK 568
            CK
Sbjct: 629 FCK 631



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 153/316 (48%), Gaps = 3/316 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++Y   ++ F KC   +   +++++ML  G  PD +  +T + C        K    F+ 
Sbjct: 515 VVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQE 574

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           + + G  PDA +Y+ +I    +AG    A+ L+   + +   +D  A++T+I  +  +G 
Sbjct: 575 IKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGK 634

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    + EEMK  G +P ++TY +++D + +  R  +   +++E    G+  N   Y+S
Sbjct: 635 VNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSS 694

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  +G+    ++   +  E+ +KG+  +V  +N LL          EA   F+ MK  +
Sbjct: 695 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLK 754

Query: 406 NCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            C P+  T+S +I  +C  R K ++A   + EM + GF+PN+F  T++I    KA    +
Sbjct: 755 -CTPNYITYSILIHGLCKIR-KFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVE 812

Query: 465 VVRALNRLPELGITPD 480
                 +  E G   D
Sbjct: 813 ADTLFEKFKEKGGVAD 828



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 169/361 (46%), Gaps = 1/361 (0%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           +L  S +++L N  M    K  +++K   LF ++ + G  PD  +++ LI         +
Sbjct: 542 RLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAH 601

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +A E F  M   GC  D   Y+++ID + ++G V  A+ L +  + +        + ++I
Sbjct: 602 EAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVI 661

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
                    D    ++EE K+ G++ N++ Y++L+D  G+  R  +   I +E+   GL+
Sbjct: 662 DGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLT 721

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           PN  T+  LL A  +A    + L  ++ MK+     +   Y+ L+     +   ++AF  
Sbjct: 722 PNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVF 781

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           +++M+  +  +P+ +T+++MI+  +  G + EA+ +F +  E G   +  +  ++I+   
Sbjct: 782 WQEMQ-KQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLS 840

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVV 517
            A R  D  R        G +   + C  LL+ + +    E   +V  V +  +K  +  
Sbjct: 841 NANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIEQAAIVGAVLRETAKAQHAA 900

Query: 518 K 518
           +
Sbjct: 901 R 901



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 161/368 (43%), Gaps = 3/368 (0%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F K R L +A      M     +P    ++ LI     +   +  +  F++M   G   +
Sbjct: 175 FIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVN 234

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
              ++++I  + R G V+ A  L D  ++     D   ++  I  +G AG  D     + 
Sbjct: 235 VHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFH 294

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           EMKA G+  + +TY +++  + +A R  +   +++ M  N   P    Y +++  YG A 
Sbjct: 295 EMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAG 354

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             ED  S+    + KG   SV  YN +L+     G  DEA + FE+MK  ++  P+  T+
Sbjct: 355 KFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMK--KDAIPNLSTY 412

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + MI +    GK+  A  + + M +AG  PN+  +  ++    KAQR DD       L  
Sbjct: 413 NIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDH 472

Query: 475 LGITPDD-RFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE 533
               PD   +C  +  +      +E  KL E +  +N     VV   L     +   K++
Sbjct: 473 KTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKED 532

Query: 534 ATELFNSI 541
             +++N +
Sbjct: 533 GHKIYNEM 540



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 98/203 (48%), Gaps = 1/203 (0%)

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           A+++L+ +      F+    + EEM   G  P+  T   ++ +  ++++  +  T  + M
Sbjct: 132 AYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTM 191

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
                 P ++ Y +L+ A   +R  +  L+++++M+E G  ++V L+ TL+ + A  G  
Sbjct: 192 RKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRV 251

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           D A  + ++MKS+ + +PD   ++  I      GKV  A   F+EM   G   +    TS
Sbjct: 252 DAALSLLDEMKSN-SLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTS 310

Query: 452 LIQCYGKAQRTDDVVRALNRLPE 474
           +I    KA R ++ V     + +
Sbjct: 311 MIGVLCKADRLNEAVELFEHMDQ 333


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 145/289 (50%), Gaps = 5/289 (1%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           +  K   +FD ML  GV+PD +TF++L++      L   A   F  M   G D D  TY+
Sbjct: 276 EFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYN 335

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMK 297
           +++DA  + G +++AF +      +   I PN   +ST+I  Y   G  D  LN++ EMK
Sbjct: 336 TLLDAVCKGGQMDLAFEIMSEMPTKN--ILPNVVTYSTMIDGYAKVGRLDDALNMFNEMK 393

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
            +GV  + ++YN LL    +  R  Q   + KEM + G+  +  TY +LL  YG+    +
Sbjct: 394 FLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYD 453

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           +   V+ EMK   +  ++  Y+TL+ + +  G   EA E+F + K +   + D   +S++
Sbjct: 454 EVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQA-GLKADVVLYSAL 512

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
           I      G V  +  + +EM + G  PN+    S+I  +G++     VV
Sbjct: 513 IDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQCVV 561



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 132/565 (23%), Positives = 246/565 (43%), Gaps = 64/565 (11%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I +N  + V  +    + A RLF  M+D+G+  D  T++TL+         + A E    
Sbjct: 297 ITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSE 356

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           MP+    P+ +TYS+MID Y + G ++ A  +++  +     +D  +++TL+ +Y   G 
Sbjct: 357 MPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGR 416

Query: 286 FDGCLNV-----------------------------------YEEMKAIGVKPNMITYNN 310
           F+  L+V                                   +EEMK   V PN++TY+ 
Sbjct: 417 FEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYST 476

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L+D   +     +   +++E    GL  +   Y++L+ A  +    E ++++  EM ++G
Sbjct: 477 LIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVTLLDEMTKEG 536

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
           ++ +V  YN+++      G +  A  + +D   +   Q +S   SS++   +   + ++ 
Sbjct: 537 IRPNVVTYNSIIDA---FGRSASAQCVVDDSGETTALQVES--LSSIVVQEAIESQAADK 591

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL---NRLPELGITPDDRFCGCL 487
           E   N ++E         L +   C  K     +++  L    ++ EL I P+      +
Sbjct: 592 ED--NRIIEI-----FGKLAAEKACEAKNSGKQEILCILGVFQKMHELKIKPNVVTFSAI 644

Query: 488 LNVMTQTPK-EELGKLVECVEK-SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS--- 542
           LN  ++    E+   L+E +    N   G    LL+  ++   +   +A  LF+ +    
Sbjct: 645 LNACSRCDSFEDASMLLEELRLFDNQVYGVAHGLLMGYRE---NVWLQAQSLFDEVKLMD 701

Query: 543 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAA 602
                A+ N L D+  +      A  ++  G   +V+ +I S S     L L  +S GAA
Sbjct: 702 SSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENIWSDS----CLDLHLMSSGAA 757

Query: 603 LTALHIWINDLSKALESGEEFPPLLGINTGHGKHK--YSDKGLASVFESHLKELNAPFHD 660
              +H W+ ++   +  G E P LL I TG GKH     D  L    E+ L  + APF  
Sbjct: 758 RAMVHAWLLNIRSIVFEGHELPKLLSILTGWGKHSKVVGDSALRRAVEALLIGMGAPFRL 817

Query: 661 SPDKVGWFLTTEAAAKSWLESRSSL 685
           +   +G F++T +   +WL+   +L
Sbjct: 818 AKCNLGRFISTGSVVAAWLKESGTL 842



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 123/422 (29%), Positives = 194/422 (45%), Gaps = 23/422 (5%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           L+A ++VI Y          +D    E +  +   R   PD+ TF  L+          K
Sbjct: 123 LEALQQVIQYG---------KDDKALENVLLNFESRLCGPDDYTF--LLRELGNRGDSAK 171

Query: 219 AVEWFE---RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
           AV  FE   R  S G +      S+MI   GR G VE+A  ++D A  E +     AFS 
Sbjct: 172 AVRCFEFAVRRES-GKNEQGKLASAMISTLGRLGKVELAKAVFDTALKEGYGKTVYAFSA 230

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDN 334
           LI  YG +G  +  + V++ MK+ G+ PN++TYN ++D  G+    + +V  I+  M  N
Sbjct: 231 LISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSN 290

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G+ P+  T+ SLL    R    E    ++  M +KG+   +  YNTLL      G  D A
Sbjct: 291 GVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLA 350

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           FEI  +M  ++N  P+  T+S+MI   +  G++ +A  MFNEM   G   +     +L+ 
Sbjct: 351 FEIMSEM-PTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLS 409

Query: 455 CYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL 513
            Y K  R +  +     +   GI  D   +   L     Q   +E+ ++ E +++     
Sbjct: 410 VYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSP 469

Query: 514 GYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKA---YCNCLID-LCVNLNLLENACKL 569
             +    L +   +G   KEA E+F    +   KA     + LID LC N  L+E++  L
Sbjct: 470 NLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKN-GLVESSVTL 528

Query: 570 LE 571
           L+
Sbjct: 529 LD 530



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 142/370 (38%), Gaps = 42/370 (11%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           + S  ++ Y+  + V+ K     +A  +F +    G+K D V +S LI     N L   +
Sbjct: 466 RVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESS 525

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGN---------------VEMAFGLYDRARNE 264
           V   + M   G  P+ +TY+S+IDA+GR+ +               VE    +  +   E
Sbjct: 526 VTLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQCVVDDSGETTALQVESLSSIVVQEAIE 585

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGC-------------LNVYEEMKAIGVKPNMITYNNL 311
               D    + +I+++G       C             L V+++M  + +KPN++T++ +
Sbjct: 586 SQAADKED-NRIIEIFGKLAAEKACEAKNSGKQEILCILGVFQKMHELKIKPNVVTFSAI 644

Query: 312 LDTMGRAKRPWQVKTIYKEMT--DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
           L+   R         + +E+   DN +   +     LL  Y R        S++ E+K  
Sbjct: 645 LNACSRCDSFEDASMLLEELRLFDNQV---YGVAHGLLMGY-RENVWLQAQSLFDEVKLM 700

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS---ENCQPDSWTFSSMITICSCRGK 426
               +   YN L  M    G    A  +  + K     EN   DS     +++  + R  
Sbjct: 701 DSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENIWSDSCLDLHLMSSGAARAM 760

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT--DDVVRALNRLPELGITPDDRFC 484
           V         ++  G E  L  L S++  +GK  +   D  +R       +G+    R  
Sbjct: 761 VHAWLLNIRSIVFEGHE--LPKLLSILTGWGKHSKVVGDSALRRAVEALLIGMGAPFRLA 818

Query: 485 GCLLNVMTQT 494
            C L     T
Sbjct: 819 KCNLGRFIST 828


>gi|255661218|gb|ACU25778.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
          Length = 426

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 193/381 (50%), Gaps = 16/381 (4%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDTA---ALALTYFTNKLKASK---EVILYNV 170
           DD  S L+ + +D +  D V+  N +         + A++ F+ +LK S    +++ YN 
Sbjct: 26  DDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSKAISIFS-RLKRSGITPDLVAYNS 84

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
            + VF K +   +A  L  +M   GV P+ +++STL++    N    +A+  F  M    
Sbjct: 85  MINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLTMYVENKKFIEALSVFAEMREIQ 144

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDG 288
           C  D +T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG A  F  
Sbjct: 145 CSLDLITCNIMIDVYGQLGMAKEADKLFWGXR--KMEIEPNVVSYNTLLRVYGDAELFGE 202

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            ++++  M+   ++ N++TYN ++   G+     +   + +EM + G+ PN  TY++++ 
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQNRGIEPNTITYSTIIS 262

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            +G+    +    ++++++  G+++   LY T++      G    A  +  ++K     +
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGIEIDQVLYQTMIITYERAGLVAHAKRLLHELK-----R 317

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD+    + I I +  G++ EA  +F + +EAG   ++ V   +I  + K ++  +++  
Sbjct: 318 PDNIPRDTAIHILAGAGRIEEATWVFRQAIEAGEVKDITVFEHMIDLFSKYKKYSNIIEV 377

Query: 469 LNRLPELGITPDDRFCGCLLN 489
            +++  +G  PD R    +LN
Sbjct: 378 FDKMRGIGYFPDSRVIALVLN 398



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 150/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M +  V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGRFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y+SMI+ +G+A   + A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSGITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLTMYVENKKFI 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++IT N ++D  G+     +   ++       + PN  +Y +LL
Sbjct: 132 EALSVFAEMREIQCSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKMEIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YNT++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P++ T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R
Sbjct: 251 EPNTITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQVLYQTMIITYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 129/283 (45%), Gaps = 36/283 (12%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           PD  TYS++I  +G+ G  + A     +   ++   D   +S LI+L     ++   +++
Sbjct: 7   PDRYTYSTLITHFGKEGRFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           +  +K  G+ P+++ YN++++  G+AK   + +++  EM   G+ PN  +Y++LL  Y  
Sbjct: 67  FSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLTMYVE 126

Query: 353 ARYGEDTLSVYREMKE---------------------------------KGMQL--SVTL 377
            +   + LSV+ EM+E                                 + M++  +V  
Sbjct: 127 NKKFIEALSVFAEMREIQCSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKMEIEPNVVS 186

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           YNTLL +  D     EA  +F  M+  +N + +  T+++M+ I     +  +A  +  EM
Sbjct: 187 YNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEM 245

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              G EPN    +++I  +GK  + D       +L   GI  D
Sbjct: 246 QNRGIEPNTITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEID 288



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+ +T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQNRGIEPNTITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + Y +MI  Y RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGIEIDQVLYQTMIITYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  + +++D   + K+   +  ++
Sbjct: 319 DNIPRDTAIHILAGAGRIEEATWVFRQAIEAGEVKDITVFEHMIDLFSKYKKYSNIIEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+    A +L AYG+ +  +    VY EM+++G
Sbjct: 379 DKMRGIGYFPDSRVIALVLNAYGKLQEFDKANEVYMEMQDEG 420


>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 410

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 182/387 (47%), Gaps = 25/387 (6%)

Query: 132 EQDCVIILNNMTNPDTAALALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFD 189
           E +CV I++ +       LA   F    KA  +  V  Y   +  + K   L +A  LF+
Sbjct: 30  EHNCVTIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFE 89

Query: 190 DMLDRGVKPDNVTFSTLISCA--RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
            M ++G  P+ +T++TLI+    R   LP+  V  FE M   G  P+ +TY+ M++A   
Sbjct: 90  AMKEKGCSPNVLTYNTLINACTKRAYRLPD-LVGLFEEMKQAGVQPNDITYNCMVNAC-- 146

Query: 248 AGNVEMAFGLYDRARN---EKWRID--PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
                +   L+D A     E   ++  PN  +++T+I   G +G  D  + ++EEMK +G
Sbjct: 147 -----VCLSLFDTASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELG 201

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
             PN  TYN+LL    R  R  +   ++  M D G  P+  TY +++   GR     +  
Sbjct: 202 RSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAE 261

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            V+ EM+ KG       YNT+L   +       A ++ + MK +  C PD WT++ ++  
Sbjct: 262 GVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRA-GCTPDLWTYNILLDA 320

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               G  SEA  +F+E+  AG  PNL   ++LI  YG+    ++  RA   +   G  P+
Sbjct: 321 AGKAGSASEAMQIFHELKAAGHSPNLVSFSALINMYGRLGYFEEAERAWVEMRATGCVPN 380

Query: 481 -DRFCGCLLNVMTQTPKEELGKLVECV 506
              +CG    +M       + K++ C+
Sbjct: 381 ATAYCG----LMNSYSHHGMYKVLCCI 403



 Score = 39.7 bits (91), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 74/183 (40%), Gaps = 30/183 (16%)

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G   +A ++F  ++     +       ++I+I    GK+  A  +F  M +AG  P++  
Sbjct: 8   GARRQALQVFRFLQEHLEYELKEHNCVTIISILGREGKLGLAREIFEGMSKAGVAPSVHA 67

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 508
            T+L+  Y K     +       + E G +P         NV+T         L+    K
Sbjct: 68  YTALLSGYAKQGLLKEAWALFEAMKEKGCSP---------NVLTYNT------LINACTK 112

Query: 509 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 568
              +L  +V L  E         K+A    N I+        NC+++ CV L+L + A +
Sbjct: 113 RAYRLPDLVGLFEE--------MKQAGVQPNDITY-------NCMVNACVCLSLFDTASQ 157

Query: 569 LLE 571
           +L+
Sbjct: 158 ILK 160


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 183/375 (48%), Gaps = 16/375 (4%)

Query: 146 DTAALALTYFTN--KLKASKEVIL-----YNVTMKVFRKCRDLDKAERLFDDMLDRGVKP 198
           D  ALAL  F    + +A  +V +     YN+ M    + R  D    LF  +L  G+K 
Sbjct: 131 DGPALALALFNRVCREEAGTQVAVPTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKM 190

Query: 199 DNVTFSTLISCARMNNLPNKAVE-WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           D +T +TL+ C    N   +AV     RM   GC P+A++YS ++ A       + A  L
Sbjct: 191 DQITANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDL 250

Query: 258 YDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
                 +     P+  A+ST+I  +   G      +++ EM   GVKP+++TYN ++D +
Sbjct: 251 LQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDAL 310

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +A+   + + + ++MT +G  P+  TY+ ++  Y      ++   ++REMK++G+  ++
Sbjct: 311 CKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNI 370

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
              N+ LA     G + EA E F+ M +++  +PD +++ +++   +  G  ++   +FN
Sbjct: 371 VTCNSFLASLCKHGRSKEAAEFFDSM-TAKGHKPDIFSYCTLLHGYASEGCFADMIGLFN 429

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
            M   G   N  V T LI  Y K    DD +     + + G++PD      +++  ++  
Sbjct: 430 SMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSR-- 487

Query: 496 KEELGKLVECVEKSN 510
              +G+L + +EK N
Sbjct: 488 ---MGRLTDAMEKFN 499



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 147/313 (46%), Gaps = 3/313 (0%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG--VKPDNVTF 203
           + A   L +  ++L      + Y++ +K         +A  L   M  +G    PD V +
Sbjct: 209 EEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAY 268

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
           ST+I          KA   F  M   G  PD +TY+ +IDA  +A  ++ A  +  +   
Sbjct: 269 STVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTT 328

Query: 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
           +  + D   +S +I  Y T G       ++ EMK  G+ PN++T N+ L ++ +  R  +
Sbjct: 329 DGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKE 388

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
               +  MT  G  P+  +Y +LL  Y       D + ++  MK  G+  +  ++  L+ 
Sbjct: 389 AAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIH 448

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
             A  G  D+A  IF +M+  +   PD  T+S++I+  S  G++++A   FN+M+  G +
Sbjct: 449 AYAKRGMVDDAMLIFTEMQ-QQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQ 507

Query: 444 PNLFVLTSLIQCY 456
           PN  V +S+IQ +
Sbjct: 508 PNTAVYSSIIQGF 520



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 163/345 (47%), Gaps = 5/345 (1%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A L L   T    A  + + Y+  +  +     L +A ++F +M  RG+ P+ VT ++
Sbjct: 317 DKAELVLRQMTTD-GAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNS 375

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
            ++    +    +A E+F+ M + G  PD  +Y +++  Y   G      GL++  ++  
Sbjct: 376 FLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNG 435

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
              + + F+ LI  Y   G  D  + ++ EM+  GV P+++TY+ ++ T  R  R     
Sbjct: 436 IAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAM 495

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM-QLSVTLYNTLL-A 383
             + +M   G+ PN   Y+S+++ +           +  EM  KG+ +  +  +++++ +
Sbjct: 496 EKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINS 555

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
           +C D G   +A +IF D+ +    +P   TF+S+I      GK+ +A  + + M   G E
Sbjct: 556 LCKD-GRVMDAHDIF-DLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVE 613

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           P++    +L+  Y K  R +D +     +   G+ P+    G +L
Sbjct: 614 PDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIML 658



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 147/317 (46%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN+ +    K R +DKAE +   M   G +PD VT+S +I          +A + F
Sbjct: 299 DVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMF 358

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  P+ +T +S + +  + G  + A   +D    +  + D  ++ TL+  Y + 
Sbjct: 359 REMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASE 418

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G F   + ++  MK+ G+  N   +  L+    +         I+ EM   G+SP+  TY
Sbjct: 419 GCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTY 478

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           ++++  + R     D +  + +M  +G+Q +  +Y++++      G   +A E+  +M +
Sbjct: 479 STVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMIN 538

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               +PD   FSS+I      G+V +A  +F+   + G  P +    SLI  Y    + D
Sbjct: 539 KGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMD 598

Query: 464 DVVRALNRLPELGITPD 480
              + L+ +  +G+ PD
Sbjct: 599 KAFKILDAMEVVGVEPD 615



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 144/289 (49%), Gaps = 2/289 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGV-KPDNVTFSTLISCARMNNLPNKAVEWFER 225
           +Y+  ++ F     L KA+ L  +M+++G+ +PD V FS++I+    +     A + F+ 
Sbjct: 512 VYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDL 571

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
               G  P  +T++S+ID Y   G ++ AF + D         D   ++TL+  Y   G 
Sbjct: 572 ATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGR 631

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  L ++ EM+  GVKPN +TY  +L  + RA R    +  + EM ++G +   + Y  
Sbjct: 632 INDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGI 691

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +L    R    ++ + +++++    ++ S+T+ NT++     V   +EA E+F  + S+ 
Sbjct: 692 ILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATI-SAS 750

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
              P+  T+  MI      G V +A  MF+ M ++G  P   +L  +I+
Sbjct: 751 GLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIR 799



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 112/263 (42%), Gaps = 17/263 (6%)

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P   TYN L+D   RA+RP     ++  +   GL  +  T  +LL+    A   E+ ++V
Sbjct: 155 PTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNV 214

Query: 363 Y-REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITI 420
               M E G   +   Y+ +L    D   +  A ++ + M K    C PD   +S++I  
Sbjct: 215 LLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHG 274

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               G+  +A ++F+EM   G +P++     +I    KA+  D     L ++   G  PD
Sbjct: 275 FFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPD 334

Query: 481 DRFCGCLLNVMTQTPKEELGKLVECVE--KSNSKLGYVVKLLLEEQDIEGDFK----KEA 534
                C+++         LG+L E  +  +   K G +  ++     +    K    KEA
Sbjct: 335 TVTYSCMIH-----GYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEA 389

Query: 535 TELFNSISKDVKK----AYCNCL 553
            E F+S++    K    +YC  L
Sbjct: 390 AEFFDSMTAKGHKPDIFSYCTLL 412


>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
 gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
          Length = 844

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 6/286 (2%)

Query: 162 SKEVILYNVTMKVFRKC-RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           S  ++ YNV + V+ K  R  DK   L D+M + G++ D  T ST+IS      L N+A 
Sbjct: 264 SPSLVTYNVMLDVYGKMGRSWDKILDLLDEMRNEGLQFDEFTCSTVISACGREGLINEAK 323

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E+F  + S G +P  +TY++++  +G+AG    A  +     +    +D   ++ L+  Y
Sbjct: 324 EFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAY 383

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
             AG ++    V + M   GV PN +TY  +++  GRA +  +   ++ +M  +G  PN 
Sbjct: 384 VRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNV 443

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY S+L   G+    E+ + +  +M+  G   +   +NTLLAMC D G       +F +
Sbjct: 444 CTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFRE 503

Query: 401 MKSSENC--QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
           MK   NC  +P   TF+++I+     G   +A  M++EM++AGF P
Sbjct: 504 MK---NCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTP 546



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 180/396 (45%), Gaps = 6/396 (1%)

Query: 118 DVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKV 174
           D+   +R  G  F E  C  +++          A  +F  +LK+S      + YN  ++V
Sbjct: 289 DLLDEMRNEGLQFDEFTCSTVISACGREGLINEAKEFFV-ELKSSGYEPGTVTYNALLQV 347

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F K     +A  +  +M D     D+VT++ L++         +     + M   G  P+
Sbjct: 348 FGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPN 407

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
           A+TY+++I+AYGRAG    A  L+++ +      +   +++++ L G     +  + +  
Sbjct: 408 AVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILS 467

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           +M+  G  PN IT+N LL   G   +   V  +++EM + G  P  +T+ +L+ AYGR  
Sbjct: 468 DMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCG 527

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
              D   +Y EM + G     T YN LL   A  G    A  +  DM+ ++  +P+  +F
Sbjct: 528 SELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVLLDMR-NKGFKPNETSF 586

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           S M+   +  G V   E +  ++ +    P+  +L +LI    K +    + RA   L +
Sbjct: 587 SLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRTLILANFKCRAVRGMERAFEELMK 646

Query: 475 LGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS 509
            G  PD      +L++  +    E   K+++ + +S
Sbjct: 647 NGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRES 682



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 119/248 (47%), Gaps = 2/248 (0%)

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           D+     MI   GR     +A  L D+   +K+ +D  A +T++  Y   G +   + ++
Sbjct: 196 DSKAVELMIRILGRESKYSIALKLLDKIPIDKYSLDVRACTTILHAYSRNGKYKQAIAMF 255

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           E MK  G+ P+++TYN +LD  G+  R W ++  +  EM + GL  +  T ++++ A GR
Sbjct: 256 ERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILDLLDEMRNEGLQFDEFTCSTVISACGR 315

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
                +    + E+K  G +     YN LL +    G   EA  I ++M+ + NC  DS 
Sbjct: 316 EGLINEAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDN-NCTLDSV 374

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T++ ++      G   E   + + M   G  PN    T++I  YG+A +    ++  N++
Sbjct: 375 TYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQM 434

Query: 473 PELGITPD 480
            + G  P+
Sbjct: 435 KKSGCVPN 442



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 158/332 (47%), Gaps = 5/332 (1%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AL  F N++K S     V  YN  + +  K    ++  ++  DM   G  P+ +T++TL+
Sbjct: 427 ALQLF-NQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLL 485

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +              F  M + G +P   T++++I AYGR G+   A  +YD      + 
Sbjct: 486 AMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFT 545

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                ++ L+      G++    +V  +M+  G KPN  +++ +L    +      ++ I
Sbjct: 546 PCATTYNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERI 605

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            K++ D  + P+W    +L+ A  + R        + E+ + G +  + ++N++L++ A 
Sbjct: 606 GKDIYDGQIFPSWVLLRTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAK 665

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
               + A ++ + ++ S   QPD  T++S++ + + RG+  +AE +   ++++G  P+L 
Sbjct: 666 NNMYERAQKMLDLIRES-GLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDLV 724

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
              ++I+ + +     + +R ++ +   GI P
Sbjct: 725 SYNTIIKGFCRQGLMQEAIRVMSEMTTRGICP 756



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 145/350 (41%), Gaps = 36/350 (10%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  +  + +    ++   + D M  +GV P+ VT++T+I+         KA++ F +
Sbjct: 374 VTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQ 433

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   GC P+  TY+S++   G+    E    +    R      +   ++TL+ + G  G 
Sbjct: 434 MKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGK 493

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                +V+ EMK  G +P   T+N L+   GR         +Y EM   G +P   TY +
Sbjct: 494 HKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNA 553

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG------------YTDE 393
           LL A  R    +   SV  +M+ KG + + T ++ +L   A  G            Y  +
Sbjct: 554 LLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQ 613

Query: 394 AF-----------------------EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
            F                         FE++  +   +PD   F+SM++I +       A
Sbjct: 614 IFPSWVLLRTLILANFKCRAVRGMERAFEELMKN-GYKPDMVIFNSMLSIFAKNNMYERA 672

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           + M + + E+G +P+L    SL+  Y +          L  L + G +PD
Sbjct: 673 QKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESPD 722



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 136/285 (47%), Gaps = 6/285 (2%)

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
            +F +M + G +P   TF+TLIS          A + ++ M   G  P A TY+++++A 
Sbjct: 499 HVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNAL 558

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
            R G+ + A  +    RN+ ++ +  +FS ++  Y   GN  G   + +++    + P+ 
Sbjct: 559 ARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSW 618

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           +    L+    + +    ++  ++E+  NG  P+   + S+L  + +    E    +   
Sbjct: 619 VLLRTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDL 678

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCR 424
           ++E G+Q  +  YN+L+ M A  G   +A EI + + KS E+  PD  +++++I     +
Sbjct: 679 IRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGES--PDLVSYNTIIKGFCRQ 736

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVV 466
           G + EA  + +EM   G  P +F   + +  Y   G     D+V+
Sbjct: 737 GLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVI 781



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 121/256 (47%), Gaps = 11/256 (4%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERM 226
           YN  +    +  D   AE +  DM ++G KP+  +FS ++ C A+  N     V   ER+
Sbjct: 551 YNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGN-----VRGLERI 605

Query: 227 PSFGCD----PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
                D    P  +   ++I A  +   V      ++      ++ D   F++++ ++  
Sbjct: 606 GKDIYDGQIFPSWVLLRTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAK 665

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
              ++    + + ++  G++P+++TYN+L++   R    W+ + I K +  +G SP+  +
Sbjct: 666 NNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVS 725

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y ++++ + R    ++ + V  EM  +G+   +  YNT ++  A  G   E  E+   M 
Sbjct: 726 YNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYM- 784

Query: 403 SSENCQPDSWTFSSMI 418
             +NC+P+  T+  ++
Sbjct: 785 IQKNCKPNELTYKIIV 800



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 9/200 (4%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+L  + +  F KCR +   ER F++++  G KPD V F++++S    NN+  +A +  +
Sbjct: 619 VLLRTLILANF-KCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLD 677

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNV----EMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
            +   G  PD +TY+S+++ Y R G      E+  GL     +     D  +++T+IK +
Sbjct: 678 LIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESP----DLVSYNTIIKGF 733

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G     + V  EM   G+ P + TYN  +          +V  +   M      PN 
Sbjct: 734 CRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNE 793

Query: 341 NTYASLLRAYGRARYGEDTL 360
            TY  ++  Y +AR  +D +
Sbjct: 794 LTYKIIVDGYCKARKYQDAM 813



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 78/159 (49%), Gaps = 4/159 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++++N  + +F K    ++A+++ D + + G++PD VT+++L++         KA E  
Sbjct: 652 DMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEIL 711

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYG 281
           + +   G  PD ++Y+++I  + R G ++ A  +          I P  F+  T +  Y 
Sbjct: 712 KGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRG--ICPCIFTYNTFVSGYA 769

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
             G F     V   M     KPN +TY  ++D   +A++
Sbjct: 770 GRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGYCKARK 808



 Score = 42.7 bits (99), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 43/87 (49%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +++ YN  +K F +   + +A R+  +M  RG+ P   T++T +S      +  +  E
Sbjct: 720 SPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDE 779

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRA 248
               M    C P+ LTY  ++D Y +A
Sbjct: 780 VISYMIQKNCKPNELTYKIIVDGYCKA 806


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 177/372 (47%), Gaps = 12/372 (3%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASK--EVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           I+N +   +     +  F   ++     +V+ YN  +    K  DL++A RL  DM  RG
Sbjct: 43  IINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRG 102

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCD--PDALTYSSMIDAYGRAGNVEM 253
             P+ VT+S LI+        ++A E  + M    CD  P+ +TY+S +D   +      
Sbjct: 103 CVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAE 162

Query: 254 AFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           A  L    R+   R+ P+   FSTLI      G  D   +V+++M A G  PN+ITYN L
Sbjct: 163 ACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNAL 222

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           ++ + +A +  +   + + M D G++P+  TY+ L+ A+ +A   ++ L +   M  +G 
Sbjct: 223 VNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGC 282

Query: 372 QLSVTL-----YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
             +V +     +N L+A     G  ++A  +FE+M  ++N QPD  TF ++I      G+
Sbjct: 283 TPNVLVPDKVTFNILIAGACKAGNFEQASALFEEM-VAKNLQPDVMTFGALIDGLCKAGQ 341

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
           V  A  + + M   G  PN+    +L+    K+ R ++  + L  +   G  PD    G 
Sbjct: 342 VEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGS 401

Query: 487 LLNVMTQTPKEE 498
           L+  + +  + +
Sbjct: 402 LVYALCRASRTD 413



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 149/306 (48%), Gaps = 6/306 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI YN  +    K   +++A  + + M+D+GV PD +T+S L+      +  ++A+E   
Sbjct: 216 VITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLH 275

Query: 225 RMPSFGCDP-----DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
            M S GC P     D +T++ +I    +AGN E A  L++    +  + D   F  LI  
Sbjct: 276 GMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDG 335

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
              AG  +   ++ + M  +GV PN++TYN L+  + ++ R  +     +EM  +G  P+
Sbjct: 336 LCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPD 395

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY SL+ A  RA   +D L +  E+K  G       YN L+      G T++A  + E
Sbjct: 396 SITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLE 455

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +M    + QPDS+TF++  +     G ++    +   +L  G  P+    +S++    ++
Sbjct: 456 EMVGKGH-QPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRS 514

Query: 460 QRTDDV 465
            + DDV
Sbjct: 515 GKLDDV 520



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 164/348 (47%), Gaps = 12/348 (3%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
             L+ S + + ++  +    KC  +D+A  +FDDM+  G  P+ +T++ L++     +  
Sbjct: 173 GSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKM 232

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV----EMAFGLYDRARNEKWRI-DPN 271
            +A    E M   G  PD +TYS ++DA+ +A  V    E+  G+  R       + D  
Sbjct: 233 ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKV 292

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
            F+ LI     AGNF+    ++EEM A  ++P+++T+  L+D + +A +    + I   M
Sbjct: 293 TFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLM 352

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
            + G+ PN  TY +L+    ++   E+      EM   G       Y +L+        T
Sbjct: 353 GNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRT 412

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           D+A ++  ++KS     PD+ T++ ++      GK  +A  +  EM+  G +P+ F   +
Sbjct: 413 DDALQLVSELKSF-GWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAA 471

Query: 452 LIQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCLLNVMTQTPK 496
              C+    R+ ++   +  L  +   G+ PD   C  +L+ + ++ K
Sbjct: 472 ---CFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSGK 516



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 155/358 (43%), Gaps = 46/358 (12%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           YN+ ++   +  D  +A  +F   + R GV P  VT++T+I+    +N     +E FE +
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G  PD +TY+++ID+  +AG++E A  L+    +     +   +S LI      G  
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRI 123

Query: 287 DGCLNVYEEM--KAIGVKPNMITYNNLLDTMG------------RAKRPWQVK------- 325
           D    + +EM  K+  V PN+ITYN+ LD +             R+ R   ++       
Sbjct: 124 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVT 183

Query: 326 ------------------TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
                             +++ +M   G  PN  TY +L+    +A   E   ++   M 
Sbjct: 184 FSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMV 243

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ-----PDSWTFSSMITICS 422
           +KG+   V  Y+ L+         DEA E+   M +S  C      PD  TF+ +I    
Sbjct: 244 DKGVTPDVITYSVLVDAFCKASRVDEALELLHGM-ASRGCTPNVLVPDKVTFNILIAGAC 302

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             G   +A A+F EM+    +P++    +LI    KA + +     L+ +  LG+ P+
Sbjct: 303 KAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPN 360



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 87/183 (47%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AA  +      L     V+ YN  +    K   +++A +  ++M+  G  PD++T+ +L+
Sbjct: 344 AARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLV 403

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                 +  + A++    + SFG DPD +TY+ ++D   ++G  E A  + +    +  +
Sbjct: 404 YALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQ 463

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   F+        +GN  G + +   + A G+ P+  T +++LD + R+ +   VK +
Sbjct: 464 PDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSGKLDDVKAM 523

Query: 328 YKE 330
            KE
Sbjct: 524 IKE 526


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 167/332 (50%), Gaps = 5/332 (1%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           + S  V  YN+ ++ F    ++D A  LFD M  +G  P+ VT++TLI         +  
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIK 278
            +    M   G +P+ ++Y+ +I+   R G + E++F L +  R   + +D   ++TLIK
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNR-RGYSLDEVTYNTLIK 318

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            Y   GNF   L ++ EM   G+ P++ITY +L+ +M +A    +      +M   GL P
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCP 378

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N  TY +L+  + +  Y  +   V REM + G   SV  YN L+      G  ++A  + 
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVL 438

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           EDMK  +   PD  ++S++++   CR   V EA  +  EM+E G +P+    +SLIQ + 
Sbjct: 439 EDMK-EKGLSPDVVSYSTVLS-GFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + +RT +       +  +G+ PD+     L+N
Sbjct: 497 EQRRTKEACDLYEEMLRVGLPPDEFTYTALIN 528



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 156/321 (48%), Gaps = 9/321 (2%)

Query: 165 VILYNVTMKVFRKCRD--LDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAV 220
           +I YNV +     CR+  + +   +  +M  RG   D VT++TLI   C   N   ++A+
Sbjct: 275 LISYNVVINGL--CREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGN--FHQAL 330

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
                M   G  P  +TY+S+I +  +AGN+  A    D+ R      +   ++TL+  +
Sbjct: 331 VMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGF 390

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G  +    V  EM   G  P+++TYN L++      +      + ++M + GLSP+ 
Sbjct: 391 SQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDV 450

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            +Y+++L  + R+   ++ L V REM EKG++     Y++L+    +   T EA +++E+
Sbjct: 451 VSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEE 510

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M       PD +T++++I      G + +A  + NEM+E G  P++   + LI    K  
Sbjct: 511 MLRV-GLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQS 569

Query: 461 RTDDVVRALNRLPELGITPDD 481
           RT +  R L +L      P D
Sbjct: 570 RTREAKRLLLKLFYEESVPSD 590



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 151/315 (47%), Gaps = 2/315 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFER 225
           ++++ +K + +   +DKA  +       G  P  ++++ ++ +  R     + A   F+ 
Sbjct: 136 VFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKE 195

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M      P+  TY+ +I  +  AGN+++A  L+D+   +    +   ++TLI  Y     
Sbjct: 196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK 255

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D    +   M   G++PN+I+YN +++ + R  R  +V  +  EM   G S +  TY +
Sbjct: 256 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNT 315

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L++ Y +       L ++ EM   G+  SV  Y +L+      G  + A E  + M+   
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
            C P+  T+++++   S +G ++EA  +  EM + GF P++    +LI  +    + +D 
Sbjct: 376 LC-PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDA 434

Query: 466 VRALNRLPELGITPD 480
           +  L  + E G++PD
Sbjct: 435 IAVLEDMKEKGLSPD 449



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 159/365 (43%), Gaps = 56/365 (15%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI Y   +    K  ++++A    D M  RG+ P+  T++TL+         N+A     
Sbjct: 345 VITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLR 404

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  P  +TY+++I+ +   G +E A  + +  + +    D  ++ST++  +  + 
Sbjct: 405 EMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSY 464

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           + D  L V  EM   G+KP+ ITY++L+      +R  +   +Y+EM   GL P+  TY 
Sbjct: 465 DVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYT 524

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSV----------------------------- 375
           +L+ AY      E  L ++ EM EKG+   V                             
Sbjct: 525 ALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYE 584

Query: 376 ------TLYNTLLAMCADV---------------GYTDEAFEIFEDMKSSENCQPDSWTF 414
                   Y+TL+  C+++               G   EA ++FE M   +N +PD   +
Sbjct: 585 ESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESM-LGKNHKPDGTAY 643

Query: 415 SSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALN 470
           + MI    CR G + +A  ++ EM+++GF  +   + +L++     GK    + V+  + 
Sbjct: 644 NIMIH-GHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVL 702

Query: 471 RLPEL 475
           R  EL
Sbjct: 703 RSCEL 707



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 114/259 (44%), Gaps = 37/259 (14%)

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYK 329
           + F  ++K Y      D  L++    +A G  P +++YN +LD   R+KR     + ++K
Sbjct: 135 SVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFK 194

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           EM ++ +SPN  TY  L+R +  A   +  L+++ +M+ KG   +V  YNTL+     + 
Sbjct: 195 EMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLR 254

Query: 390 YTDEAFEIFEDMKSSENCQP-----------------------------------DSWTF 414
             D+ F++   M + +  +P                                   D  T+
Sbjct: 255 KIDDGFKLLRSM-ALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTY 313

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +++I      G   +A  M  EML  G  P++   TSLI    KA   +  +  L+++  
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373

Query: 475 LGITPDDRFCGCLLNVMTQ 493
            G+ P++R    L++  +Q
Sbjct: 374 RGLCPNERTYTTLVDGFSQ 392



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 100/238 (42%), Gaps = 50/238 (21%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V+ Y+  +  F +  D+D+A R+  +M+++G+KPD +T+S+LI          +A +
Sbjct: 447 SPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACD 506

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD---------------------- 259
            +E M   G  PD  TY+++I+AY   G++E A  L++                      
Sbjct: 507 LYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLN 566

Query: 260 ---RARNEKW-------------------------RIDPNAFSTLIKLYGTAGNFDGCLN 291
              R R  K                           I+  +  +LIK +   G       
Sbjct: 567 KQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQ 626

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           V+E M     KP+   YN ++    RA    +  T+YKEM  +G   +  T  +L++A
Sbjct: 627 VFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKA 684


>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
 gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
          Length = 1450

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 196/415 (47%), Gaps = 17/415 (4%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVI-LYNVTMKVFRKCRDLDKAERLFDDMLDRGV 196
           IL  +   +   LA+  FT    + +  + +YN  M V+ +    +K + LFD M +RG 
Sbjct: 228 ILAVLGKANQEPLAVEVFTRAEPSVENTVKVYNAMMGVYARSGKFNKVQELFDLMRERGC 287

Query: 197 KPDNVTFSTLISCARMNN---LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           +PD V+F+TLI+ AR+      PN A+E    +   G  PD +TY+++I A  RA N+E 
Sbjct: 288 EPDLVSFNTLIN-ARLKAGEMTPNLAIELLTEVRRSGLRPDIITYNTLISACSRASNLEE 346

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  ++D         D   ++ +I +YG  G       ++ ++++ G  P+ ++YN+ L 
Sbjct: 347 AVNVFDDMVAHHCEPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLY 406

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
              R     +VK I +EM   G   +  TY +++  YG+    +  L +YR+MK  G   
Sbjct: 407 AFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNP 466

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
            V  Y  L+         +EA  +  +M ++   +P   T+S++I   +  GK  EAE  
Sbjct: 467 DVITYTVLIDSLGKTNKIEEAAGMMSEMLNT-GVKPTLRTYSALICGYAKAGKPVEAEET 525

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCLLNV 490
           F+ ML +G  P+    + ++  +    R ++  RA+    E+   GI P+      +L  
Sbjct: 526 FDCMLRSGTRPDQLAYSVMLDIH---LRFNEPKRAMTFYKEMIHDGIMPEHSLYELMLRT 582

Query: 491 MTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 544
           +    K E++G++V  +E+        +  +L    ++GD   EA ++      D
Sbjct: 583 LGNANKVEDIGRVVRDMEEVCGMNPQAISYIL----VKGDCYDEAAKMLRRAISD 633



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/461 (21%), Positives = 196/461 (42%), Gaps = 19/461 (4%)

Query: 223  FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            +  M + G  P    Y  M     R   V     +        ++ D + +++++K+Y  
Sbjct: 908  YHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVA 967

Query: 283  AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
              +F     +Y+ +K  G++P+  TYN L+    R  RP +   +  EM   GL P  +T
Sbjct: 968  IDDFRKTTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDT 1027

Query: 343  YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
            Y SL+ ++G+ +  E    ++ E++  G +L  + Y+ ++ +  + G   +A  +F  MK
Sbjct: 1028 YKSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMK 1087

Query: 403  SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
              E  +P   T   ++      G+  EAE + + + E     +    +S+I  Y +    
Sbjct: 1088 D-EGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETDANLSTLPYSSVIDAYVRNGDY 1146

Query: 463  DDVVRALNRLPELGITPDDRFCGCLLNV--MTQTPKEELGKLVECVEKSNSKLGYVVKLL 520
            +  ++ L ++ E G+ PD R   C +    ++Q   E +  L+  +  +   L   ++LL
Sbjct: 1147 NAGIQKLKQVKEEGLEPDHRIWTCFIRAASLSQHTSEAI-LLLNALRDTGFDLP--IRLL 1203

Query: 521  LEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT 580
             E+ +          E+  ++  +    + N L DL     L   A  +  L +  ++Y 
Sbjct: 1204 TEKPEPLVSALDLCLEMLETLGDNAAFNFVNALEDLLWAFELRATASWVFLLAIKRKIYR 1263

Query: 581  -DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYS 639
             D+   +   W    + LS GAAL A          +L+   E P  + + TG  +  Y+
Sbjct: 1264 HDVFRVADKDWGADFRKLSGGAALDA----------SLQGCPESPKSVALITGTAE--YN 1311

Query: 640  DKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLE 680
               L S  ++ L E+ +PF     + G  +    + K WL+
Sbjct: 1312 MVSLDSTLKACLWEMGSPFLPCKTRSGLLIAKAHSLKMWLK 1352



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 124/253 (49%), Gaps = 11/253 (4%)

Query: 254 AFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           AF +Y+      W   PNA   ST++ + G A      + V+   +   V+  +  YN +
Sbjct: 205 AFEVYEWLNLRHW-YSPNARMLSTILAVLGKANQEPLAVEVFTRAEP-SVENTVKVYNAM 262

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT----LSVYREMK 367
           +    R+ +  +V+ ++  M + G  P+  ++ +L+ A  R + GE T    + +  E++
Sbjct: 263 MGVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLINA--RLKAGEMTPNLAIELLTEVR 320

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
             G++  +  YNTL++ C+     +EA  +F+DM  + +C+PD WT+++MI++    G  
Sbjct: 321 RSGLRPDIITYNTLISACSRASNLEEAVNVFDDM-VAHHCEPDLWTYNAMISVYGRCGLS 379

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
            +AE +FN++   GF P+     S +  + +    + V      + ++G   D+     +
Sbjct: 380 GKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTM 439

Query: 488 LNVMTQTPKEELG 500
           +++  +  + +L 
Sbjct: 440 IHMYGKQGQNDLA 452



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 143/328 (43%), Gaps = 8/328 (2%)

Query: 177  KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
            K + LD A + + +  + G       F  LI C   N L  +A + F  M   G      
Sbjct: 686  KAQQLDTALKEYSNSRELGFTGSFTMFEALIQCCLENELFTEASQVFSDMRFCGIKASEC 745

Query: 237  TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP-NAFSTLIKLYGTAGNFDGCLNVYEE 295
             Y SM+  Y + G  E A  L D    +   ++  + +  +I+ YG    +    +V   
Sbjct: 746  LYQSMMLLYCKMGFPETAHHLIDLTETDGTVLNNISVYVDVIEAYGRLKLWQKAESVAGN 805

Query: 296  MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
            M+   +  N   +N L++    +    + + ++  M  +G SP  ++   LL+A      
Sbjct: 806  MRQSCITVNRKVWNALIEAYAASGCYERARAVFNTMMKDGPSPTVDSINGLLQALIVDGR 865

Query: 356  GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
             E+   V +E+++ G ++S +    +L   A  G   E  +I+  MK++    P    + 
Sbjct: 866  LEELYVVVQELQDIGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAA-GYFPSMHLYR 924

Query: 416  SMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
             M  +  CRGK V + EAM +EM EAGF+P+L +  S+++ Y          +   R+ E
Sbjct: 925  VMAQLL-CRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKE 983

Query: 475  LGITPDDRFCGCLLNVM---TQTPKEEL 499
             G+ PD+     L+ VM      PKE L
Sbjct: 984  DGLEPDEDTYNILI-VMYCRDHRPKEGL 1010



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/238 (19%), Positives = 120/238 (50%)

Query: 167  LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
            ++N  +K++    D  K  +++  + + G++PD  T++ LI     ++ P + +   + M
Sbjct: 957  IWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPKEGLVLMDEM 1016

Query: 227  PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
             + G +P   TY S++ ++G+   VE A  L++  ++   ++D + +  ++K+Y  +G+ 
Sbjct: 1017 RTVGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSH 1076

Query: 287  DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                 ++  MK  GV+P + T + L+ + G + +P + + +   + +   + +   Y+S+
Sbjct: 1077 SKAQRLFSMMKDEGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETDANLSTLPYSSV 1136

Query: 347  LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            + AY R       +   +++KE+G++    ++   +   +   +T EA  +   ++ +
Sbjct: 1137 IDAYVRNGDYNAGIQKLKQVKEEGLEPDHRIWTCFIRAASLSQHTSEAILLLNALRDT 1194



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 129/322 (40%), Gaps = 42/322 (13%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K+   K+ + YN  + ++ K    D A +L+ DM   G  PD +T++ LI      N   
Sbjct: 426 KIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIE 485

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +A      M + G  P   TYS++I  Y +AG    A   +D                  
Sbjct: 486 EAAGMMSEMLNTGVKPTLRTYSALICGYAKAGKPVEAEETFD------------------ 527

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
                      C      M   G +P+ + Y+ +LD   R   P +  T YKEM  +G+ 
Sbjct: 528 -----------C------MLRSGTRPDQLAYSVMLDIHLRFNEPKRAMTFYKEMIHDGIM 570

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLAMCADVGYTDEAFE 396
           P  + Y  +LR  G A   ED   V R+M+E  GM      Y  +   C      DEA +
Sbjct: 571 PEHSLYELMLRTLGNANKVEDIGRVVRDMEEVCGMNPQAISYILVKGDC-----YDEAAK 625

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           +      S+  + D     S+++  S  G+ S A  +   + E     +  +  +L+   
Sbjct: 626 MLRR-AISDRYEIDRENLLSILSSYSSSGRHSVALDLLELLKEHTPRSSQMITEALVVML 684

Query: 457 GKAQRTDDVVRALNRLPELGIT 478
            KAQ+ D  ++  +   ELG T
Sbjct: 685 CKAQQLDTALKEYSNSRELGFT 706



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 140/369 (37%), Gaps = 41/369 (11%)

Query: 126 LGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAE 185
            G D +  + +I +      +  AL L         + +VI Y V +    K   +++A 
Sbjct: 429 FGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAA 488

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
            +  +ML+ GVKP   T+S LI        P +A E F+ M   G  PD L YS M+D +
Sbjct: 489 GMMSEMLNTGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIH 548

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPN 304
            R    + A   Y    ++    + + +  +++  G A   +    V  +M+ + G+ P 
Sbjct: 549 LRFNEPKRAMTFYKEMIHDGIMPEHSLYELMLRTLGNANKVEDIGRVVRDMEEVCGMNPQ 608

Query: 305 MITY---------------------------------NNLLDTMGRAKRPWQVKTIYKEM 331
            I+Y                                  +   + GR      +  + KE 
Sbjct: 609 AISYILVKGDCYDEAAKMLRRAISDRYEIDRENLLSILSSYSSSGRHSVALDLLELLKEH 668

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
           T    S    T A L+    +A+  +  L  Y   +E G   S T++  L+  C +    
Sbjct: 669 TPR--SSQMITEA-LVVMLCKAQQLDTALKEYSNSRELGFTGSFTMFEALIQCCLENELF 725

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE--AGFEPNLFVL 449
            EA ++F DM+     +     + SM+ +  C+    E      ++ E       N+ V 
Sbjct: 726 TEASQVFSDMRFC-GIKASECLYQSMM-LLYCKMGFPETAHHLIDLTETDGTVLNNISVY 783

Query: 450 TSLIQCYGK 458
             +I+ YG+
Sbjct: 784 VDVIEAYGR 792


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 186/411 (45%), Gaps = 19/411 (4%)

Query: 92  EKSYDTRYNSLVKLAADLDSCSA----TEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDT 147
           E SY+T  N   K A D+    A     +D   +VLR            I+L  + +   
Sbjct: 137 EVSYNTLMNGFFK-AGDVKKALALFGEMKDSGIAVLRSHN---------IVLRGLCSGGK 186

Query: 148 AALALTYFTNKLKA-SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
            ++A   F +     S  +I Y + +    K R +DKA  LF  M+D+ + PD VT+  L
Sbjct: 187 ISMAWEVFKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGAL 246

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY-DRARNEK 265
           I          +A + FE   + GC P  +TY++MID   + G +E A  LY D  R   
Sbjct: 247 IDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPH 306

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
            + D   +S LI     +   +    +YEEM   G  P+++TYN LLD + ++    +  
Sbjct: 307 LKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAM 366

Query: 326 TIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
            I+++M   N   PN  TY  L+  + +     D + + +EM+ + +      + T++  
Sbjct: 367 EIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQK 426

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
                  DEA E+FE +   + C+PDS  F++M+       ++ +A+ + + ML++G  P
Sbjct: 427 LCKESRIDEAHELFESI--GKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAP 484

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
            L   T+L+  + +  R  D +   + + E+G  P+      +    T  P
Sbjct: 485 TLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPPERHLAELVDRTRTDHP 535



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 164/330 (49%), Gaps = 30/330 (9%)

Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
           +PD ++Y+++++ + +AG+V+ A  L+   ++    +   + + +++   + G       
Sbjct: 134 EPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAV-LRSHNIVLRGLCSGGKISMAWE 192

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           V+++M  I   PN+I+Y  ++D + ++++  +  T++K+M D  + P+  TY +L+   G
Sbjct: 193 VFKDMSGI-FSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLG 251

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           + R  ++   ++ E + KG   +V  YNT++      G  + A  +++DM    + +PD 
Sbjct: 252 KQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDM 311

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
           +T+S++I   +   +  +A  ++ EML+ G  P++    +L+    K+   D   +A+  
Sbjct: 312 FTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCED---KAMEI 368

Query: 472 LPELGIT----PD--------DRFCGC-LLNVMTQTPKEELGK--LVECVEKSNSKLGYV 516
             ++G+     P+        DRFC    L    +  KE  G+  L + V  +      V
Sbjct: 369 FRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTT-----V 423

Query: 517 VKLLLEEQDIEGDFKKEATELFNSISKDVK 546
           ++ L +E  I+     EA ELF SI K  K
Sbjct: 424 IQKLCKESRID-----EAHELFESIGKTCK 448



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 5/162 (3%)

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           N  T NNLL    +A+R       ++    N   P+  +Y +L+  + +A   +  L+++
Sbjct: 101 NRFTCNNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALF 160

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICS 422
            EMK+ G+ +  +    L  +C+  G    A+E+F+DM  S    P+  +++ MI  +C 
Sbjct: 161 GEMKDSGIAVLRSHNIVLRGLCSG-GKISMAWEVFKDM--SGIFSPNLISYTIMIDGLCK 217

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            R KV +A  +F +M++    P++    +LI   GK +R  +
Sbjct: 218 SR-KVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKE 258


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 177/353 (50%), Gaps = 12/353 (3%)

Query: 134 DCVIILNNMTN-PDTAALA--LTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDD 190
           D   ++N +++ P   ++A  L  F NKL  +     + +  K F +  D  ++ RLF  
Sbjct: 76  DVETLINKLSSLPPRGSIARCLEIFKNKLSLND----FALVFKEFAQRGDWQRSLRLFKY 131

Query: 191 MLDRGV--KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
           M  R +  KP+   ++ +IS      L  K+ E FE MP+ G      +Y+++I++YGR 
Sbjct: 132 M-QRQIWCKPNEHIYTIIISLLGREGLLEKSTEIFEEMPTHGVPRSVFSYTALINSYGRH 190

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNMIT 307
           G  E++  L +R + EK       ++T+I      G N++G L+++ EM+  G++P++IT
Sbjct: 191 GQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRHEGIQPDIIT 250

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           YN LL+         + + +++ M + G+ P+  TY +L+  +G+    E    + +EM+
Sbjct: 251 YNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELLKEME 310

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
             G    ++ YN LL   A  G    A  +F  M+ +  C P++ T+S ++ +    G+ 
Sbjct: 311 SSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEA-RCVPNAVTYSMLLNLYGGHGRY 369

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +   +F EM  +  EP++     LI+ +G+     +VV   + + E  + P+
Sbjct: 370 DDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPN 422



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 119/513 (23%), Positives = 221/513 (43%), Gaps = 55/513 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I YN  +         D+AE +F  M + G+ PD  T+  L+      N   K  E  
Sbjct: 247 DIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELL 306

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYG 281
           + M S G  PD  +Y+ +++AY   G++  A G++ +   ++ R  PNA  +S L+ LYG
Sbjct: 307 KEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQM--QEARCVPNAVTYSMLLNLYG 364

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G +D    ++ EMK    +P++ TYN L++  G      +V T++ +M +  + PN  
Sbjct: 365 GHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMG 424

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY  L+ A G+    ED   +   M EKG+  S   Y  ++         +EA  +F  M
Sbjct: 425 TYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTM 484

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
                 +P   T++S+I + +  G   E+EA+  +M E+G   +      +I+ Y +  +
Sbjct: 485 NEM-GSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQ 543

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNV-----MTQTPKEELGK--------------- 501
            ++ ++    L +    PD+R    +L+V     +    +E+  +               
Sbjct: 544 FEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDESEEQFREIRASGILPSVMCYCM 603

Query: 502 -----------------LVECVEKSNSKLGYVVKLLLEE--------QDIEGDFKKEATE 536
                            L E V    S +  VV  +++         Q +E  F K    
Sbjct: 604 MIAVYARSNRWDDAYEVLDEMVTNKVSNIHQVVGKMMKGDYDDYSNWQMVEYVFDK---- 659

Query: 537 LFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKS 596
             NS    +   + N L++    L   E A ++L   +   ++ ++  +S   WS+ +  
Sbjct: 660 -LNSEGCGLGMRFYNTLLEALWWLGQKERAARVLSEAIKRGLFPELFRKSKLVWSVDVHR 718

Query: 597 LSLGAALTALHIWINDLSKALESGEEFPPLLGI 629
           +  G A TA+ +W+N++ +    GE+ P +  +
Sbjct: 719 MWEGGACTAISVWLNNMHEMFLKGEDLPHVASV 751


>gi|255552808|ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543458|gb|EEF44989.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 167/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K R   +A  L  +M + GV PD V++STL+S    N    +A+  F
Sbjct: 238 DLVAYNSMINVFGKARLFREARMLVHEMREVGVLPDTVSYSTLLSVYVENEKFVEALSVF 297

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D +T + MID YG+   V+ A  L+   R  K  I+PN  +++TL+K+YG
Sbjct: 298 AEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSMR--KMGIEPNVVSYNTLLKVYG 355

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN ++   G++    +   + +EM   G+ PN  
Sbjct: 356 EAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAI 415

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+A   +    ++++++  G+++   LY T++      G    A  +  D+
Sbjct: 416 TYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHDL 475

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K    C PD     + I I +  G++ EA  +F +  +AG   ++ V   +I+ + + +R
Sbjct: 476 K----C-PDIIPRDTAIKILARAGRIEEATWVFRQAFDAGEVKDISVFRCMIELFSRNKR 530

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV    ++   G  PD      +LN
Sbjct: 531 PANVVEVFEKMRGAGYFPDSDVIALVLN 558



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 188/411 (45%), Gaps = 39/411 (9%)

Query: 109 LDSCSATEDDV--FSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKL-KASKEV 165
           L S S T+++V  +S+L    +  L    ++ L +       +LAL  + N++ + S  V
Sbjct: 75  LISISQTQNEVELYSLLSPYKERQLSIRFMVSLISQEADWQRSLALLDWINEVARYSPSV 134

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS----------------- 208
             YNV ++   + +  D A  LFD+M  R + PD  T+STLI+                 
Sbjct: 135 FAYNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYTYSTLITSFGKAGMFDESLFWLQQ 194

Query: 209 ---------CARMNNLP---------NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
                        +NL          +KA+  F R+   G  PD + Y+SMI+ +G+A  
Sbjct: 195 MEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGITPDLVAYNSMINVFGKARL 254

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
              A  L    R      D  ++STL+ +Y     F   L+V+ EM       +++T N 
Sbjct: 255 FREARMLVHEMREVGVLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEANCSLDLMTCNI 314

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           ++D  G+     +   ++  M   G+ PN  +Y +LL+ YG A    + + ++R M+ K 
Sbjct: 315 MIDVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAELFGEAIHLFRLMQRKE 374

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
           ++ +V  YNT++ +       ++A  + ++M+     +P++ T+S++I+I    GK+  A
Sbjct: 375 IEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQ-KRGIEPNAITYSTIISIWGKAGKLDRA 433

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
             +F ++  +G E +  +  ++I  Y +A       R L+ L    I P D
Sbjct: 434 AMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHDLKCPDIIPRD 484



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 148/335 (44%), Gaps = 52/335 (15%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     + +  + V+ YN  +K++ K  + +KA  L  +M  RG++P+ +T+ST+IS
Sbjct: 363 AIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTIIS 422

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + Y +MI AY RAG V  A  L    +     I
Sbjct: 423 IWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHDLKCPD--I 480

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
            P    T IK+   AG  +    V+ +    G   ++  +  +++   R KRP  V  ++
Sbjct: 481 IPR--DTAIKILARAGRIEEATWVFRQAFDAGEVKDISVFRCMIELFSRNKRPANVVEVF 538

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           ++M   G  P+ +  A +L AYG+ R  E   +VYREM+E+                   
Sbjct: 539 EKMRGAGYFPDSDVIALVLNAYGKLREFEKADAVYREMQEE------------------- 579

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL-- 446
                           E   PD   F  M+++   R      E++F ++     +PN+  
Sbjct: 580 ----------------ECVFPDEVHF-QMLSLYGARKDFIMVESLFEKL---DSDPNINK 619

Query: 447 ----FVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
                V+ S+   Y +  R +D  R +NR+ + G+
Sbjct: 620 KELHLVVASI---YERQNRLNDASRIMNRMSKEGM 651



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 115/271 (42%), Gaps = 38/271 (14%)

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           ++W   +  +   P    Y+ ++    RA   ++A GL+D  R      D   +STLI  
Sbjct: 121 LDWINEVARYS--PSVFAYNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYTYSTLITS 178

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +G AG FD  L   ++M+   V  +++ Y+NL++   +     +  +I+  +  +G++P+
Sbjct: 179 FGKAGMFDESLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGITPD 238

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
              Y S++  +G+AR   +   +  EM+E G                             
Sbjct: 239 LVAYNSMINVFGKARLFREARMLVHEMREVG----------------------------- 269

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
                    PD+ ++S+++++     K  EA ++F EM EA    +L     +I  YG+ 
Sbjct: 270 -------VLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEANCSLDLMTCNIMIDVYGQL 322

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
               +  R    + ++GI P+      LL V
Sbjct: 323 DMVKEADRLFWSMRKMGIEPNVVSYNTLLKV 353



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 105/245 (42%), Gaps = 43/245 (17%)

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P++  YN +L  + RAK+      ++ EM    LSP+  TY++L+ ++G+A   +++L  
Sbjct: 132 PSVFAYNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYTYSTLITSFGKAGMFDESLFW 191

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
            ++M++  +   + LY+ L+ +   +    +A  IF  +K S                  
Sbjct: 192 LQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRS------------------ 233

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
                             G  P+L    S+I  +GKA+   +    ++ + E+G+ PD  
Sbjct: 234 ------------------GITPDLVAYNSMINVFGKARLFREARMLVHEMREVGVLPDTV 275

Query: 483 FCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG--DFKKEATELF 538
               LL+V  +  K  E L    E  E + S       +++   D+ G  D  KEA  LF
Sbjct: 276 SYSTLLSVYVENEKFVEALSVFAEMNEANCSLDLMTCNIMI---DVYGQLDMVKEADRLF 332

Query: 539 NSISK 543
            S+ K
Sbjct: 333 WSMRK 337


>gi|242032435|ref|XP_002463612.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
 gi|241917466|gb|EER90610.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
          Length = 638

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 129/525 (24%), Positives = 223/525 (42%), Gaps = 50/525 (9%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           D++E L   ML+ GV PD V++  ++   A   NL ++  E F  M   G   DA  Y  
Sbjct: 38  DQSEMLLRTMLEAGVSPDTVSYRYIVDAFASAGNL-SRVAELFSEMAVMGNTADASAYLG 96

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +++A+ R G    A  +  + + +        +  L+ LYG  G FDG   ++ EM+   
Sbjct: 97  LMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELFREMRT-A 155

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           V P+  TYN L    G      +V  ++ +M + G+ P+  T  +++ A GR    ED  
Sbjct: 156 VPPDTATYNVLFRVYGDGGFFKEVVELFHDMLETGVEPDMVTCENVMAACGRGGLHEDAR 215

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            V   M  +GM  +   Y  L+         +EA+  F +M +     P   T++++   
Sbjct: 216 EVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAF-NMMTEIGSLPTLETYNTLAFA 274

Query: 421 CSCRGKVSEAEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
            +  G   EAEA+F+ M   AG + N     +LI+ Y +  + DD V+A   + +    P
Sbjct: 275 YARGGLFQEAEAIFSRMSNNAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNP 334

Query: 480 DDRFCGCLLNV-----MTQTPKEELGKLVECV---------------------------- 506
           D+R    +LN      +    KE+  +L   V                            
Sbjct: 335 DERSLEGVLNAYCIAGVIDESKEQFEELQSSVTLPSIIAYCMMLSLYARNDRWADAYDML 394

Query: 507 -----EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVN 559
                 +++S    +  L+  E D   +++     L NS  +  D    + N L+D+   
Sbjct: 395 EEMKTNRASSTHQVIASLIKGEYDDSSNWQMVEYALENSTMEGCDYSLRFFNALLDVLWW 454

Query: 560 LNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALES 619
                 A ++L+  +   ++ ++   +   WSL +  +S+G AL A+ +W+N L   L  
Sbjct: 455 FGQKGRAARVLDQAVQFGLFPELYRDTKLVWSLDVHRMSVGGALVAVSVWLNKLYDRLVE 514

Query: 620 GEEFPPLLGINTGHGKHKYS--DKGL--ASVFESHLKE-LNAPFH 659
            E+ P L  +    G+ + S   +GL  A V  S L + L+A FH
Sbjct: 515 DEDLPQLASVVVLRGEMEKSTITRGLPTAKVVYSFLNDTLSASFH 559



 Score = 38.9 bits (89), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 397 IFEDMK--SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           +F +M+  +S + +PD  T+++++   + R    ++E +   MLEAG  P+      ++ 
Sbjct: 5   LFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLRTMLEAGVSPDTVSYRYIVD 64

Query: 455 CYGKAQRTDDVVRALNRLPELGITPD 480
            +  A     V    + +  +G T D
Sbjct: 65  AFASAGNLSRVAELFSEMAVMGNTAD 90


>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g18110,
            chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE
            1270; Flags: Precursor
 gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1440

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 121/556 (21%), Positives = 248/556 (44%), Gaps = 53/556 (9%)

Query: 168  YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
            +N  M  + +C   ++A  +F+ M+  G  P   + + L+    ++    +     E + 
Sbjct: 790  WNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQ 849

Query: 228  SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD-------------------------RAR 262
              G      +   M+DA+ RAGN+     +Y                          R R
Sbjct: 850  DMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVR 909

Query: 263  NEK----------WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            + +          ++++   +++++K+Y    ++   + VY+ +K  G++P+  TYN L+
Sbjct: 910  DAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLI 969

Query: 313  DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                R +RP +   + ++M + GL P  +TY SL+ A+G+ +  E    ++ E+  KG++
Sbjct: 970  IMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLK 1029

Query: 373  LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            L  + Y+T++ +  D G   +A ++ + MK++   +P   T   ++   S  G   EAE 
Sbjct: 1030 LDRSFYHTMMKISRDSGSDSKAEKLLQMMKNA-GIEPTLATMHLLMVSYSSSGNPQEAEK 1088

Query: 433  MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            + + + +   E      +S+I  Y +++  +  +  L  + + G+ PD R   C +   +
Sbjct: 1089 VLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAAS 1148

Query: 493  -QTPKEELGKLVECVEKSNSKLGYVVKLL-----LEEQDIEGDFKKEATELFNSISKDVK 546
                K E+  L++ +E     L   ++LL     L   +++G F+K       SI  +  
Sbjct: 1149 FSKEKIEVMLLLKALEDIGFDLP--IRLLAGRPELLVSEVDGWFEK-----LKSIEDNAA 1201

Query: 547  KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTA 605
              + N L++L     L   A  + +LG+   +++ D+   +   W    + LS GAAL A
Sbjct: 1202 LNFVNALLNLLWAFELRATASWVFQLGIKRGIFSLDVFRVADKDWGADFRRLSGGAALVA 1261

Query: 606  LHIWINDLSKA-LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 664
            L +W++ +  A LE   E P  + + TG    +Y+   L    ++ L E+ +PF     +
Sbjct: 1262 LTLWLDHMQDASLEGYPESPKSVVLITGTA--EYNGISLDKTLKACLWEMGSPFLPCKTR 1319

Query: 665  VGWFLTTEAAAKSWLE 680
             G  +    + + WL+
Sbjct: 1320 TGLLVAKAHSLRMWLK 1335



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 144/277 (51%), Gaps = 2/277 (0%)

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV--EMAFGLYDRARNEKWRIDPNAFS 274
           +KA E  + M   GC PD ++++++I+A  ++G +   +A  L D  RN   R D   ++
Sbjct: 242 SKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYN 301

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
           TL+       N DG + V+E+M+A   +P++ TYN ++   GR     + + ++ E+   
Sbjct: 302 TLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELK 361

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G  P+  TY SLL A+ R R  E    VY++M++ G       YNT++ M    G  D A
Sbjct: 362 GFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLA 421

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            ++++DMK      PD+ T++ +I       +  EA A+ +EML+ G +P L   ++LI 
Sbjct: 422 LQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALIC 481

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            Y KA + ++     + +   G  PD+     +L+V+
Sbjct: 482 GYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVL 518



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 123/247 (49%), Gaps = 3/247 (1%)

Query: 164  EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
            E+ ++N  +K++    D  K  +++  + + G++PD  T++TLI     +  P +     
Sbjct: 926  ELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLM 985

Query: 224  ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            ++M + G DP   TY S+I A+G+   +E A  L++   ++  ++D + + T++K+   +
Sbjct: 986  QQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDS 1045

Query: 284  GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            G+      + + MK  G++P + T + L+ +   +  P + + +   + D  +      Y
Sbjct: 1046 GSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPY 1105

Query: 344  ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +S++ AY R++     +    EMK++G++    ++   +   +   ++ E  E+   +K+
Sbjct: 1106 SSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAAS---FSKEKIEVMLLLKA 1162

Query: 404  SENCQPD 410
             E+   D
Sbjct: 1163 LEDIGFD 1169



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 137/303 (45%), Gaps = 4/303 (1%)

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           + TL+ C   N    +A + F  +   GC+       SM+  Y + G  E A  + ++A 
Sbjct: 684 YETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAE 743

Query: 263 NEKWRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
            + +    +  ++ +I+ YG    +    +V   ++  G  P++ T+N+L+    +    
Sbjct: 744 TKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCY 803

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
            + + I+  M  +G SP   +   LL A       E+   V  E+++ G ++S +    +
Sbjct: 804 ERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLM 863

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEA 440
           L   A  G   E  +I+  MK++    P    +  MI +  C+GK V +AE M +EM EA
Sbjct: 864 LDAFARAGNIFEVKKIYSSMKAA-GYLPTIRLYRMMIELL-CKGKRVRDAEIMVSEMEEA 921

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
            F+  L +  S+++ Y   +     V+   R+ E G+ PD+     L+ +  +  + E G
Sbjct: 922 NFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEG 981

Query: 501 KLV 503
            L+
Sbjct: 982 YLL 984



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/410 (20%), Positives = 145/410 (35%), Gaps = 77/410 (18%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD-RGVKPDNVTFSTLISCARMNNL 215
            K+   K+ + YN  + ++ K   LD A +L+ DM    G  PD +T++ LI      N 
Sbjct: 394 QKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANR 453

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
             +A      M   G  P   TYS++I  Y +AG  E A   +        + D  A+S 
Sbjct: 454 TVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSV 513

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR--------------- 320
           ++ +            +Y +M + G  P+   Y  ++  + +  R               
Sbjct: 514 MLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELC 573

Query: 321 ---PWQVKTIY-------------KEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLS 361
              P ++ ++              K    NG     +T  S+L +Y   GR     + L 
Sbjct: 574 GMNPLEISSVLVKGECFDLAARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLE 633

Query: 362 VYREMKEKGMQL----------------------------------SVTLYNTLLAMCAD 387
             +E      +L                                  S T+Y TLL  C  
Sbjct: 634 FLKEHASGSKRLITEALIVLHCKVNNLSAALDEYFADPCVHGWCFGSSTMYETLLHCCVA 693

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE---- 443
             +  EA ++F D++ S  C+       SM+ +    G    A  + N+    GF     
Sbjct: 694 NEHYAEASQVFSDLRLS-GCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACS 752

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           P   + T +I+ YGK +        +  L + G TPD +    L++   Q
Sbjct: 753 P---MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQ 799


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 206/429 (48%), Gaps = 19/429 (4%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A AL      +  S +V+ YN  +  + KC +L++ E L  +M   G   D VT++ LI+
Sbjct: 218 ARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALIN 277

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           C        KA  +F  M   G   + +T S+ +DA+ + G V  A  L+ + R      
Sbjct: 278 CFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMP 337

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           +   +++L+     AG  D  + + +EM   G+ PN++TY  ++D + +  +      + 
Sbjct: 338 NEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVL 397

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             M   G+  N   Y +L+  +   +  E  L +  EMK KGM+L V+LY TL+     V
Sbjct: 398 SLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKV 457

Query: 389 GYTDEAFEIFEDMKSSENC--QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
              DEA  +   M   ++C  +P++  +++++      GK SEA A+ +++ ++G +PN+
Sbjct: 458 QKLDEAKSLLHKM---DDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNV 514

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV--- 503
               +LI    KA    + +   +++ ELG+ P+ +    L++   +     L K V   
Sbjct: 515 VTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIG--SLSKAVHLM 572

Query: 504 -ECVEKSNS--KLGY--VVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYC-NCLIDLC 557
            E V+K  S  K+ Y  ++   +++ D++G F  +A  +   +  D+   YC  C I   
Sbjct: 573 NEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDL---YCYTCFISGF 629

Query: 558 VNLNLLENA 566
            N+N+++ A
Sbjct: 630 CNMNMMQEA 638



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 143/312 (45%), Gaps = 1/312 (0%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K   LD A  L D+M+ +G+ P+ VT++ ++           A +    M   G   + L
Sbjct: 351 KAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANEL 410

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            Y+++I  +    N E A  L +  +N+   +D + + TLI         D   ++  +M
Sbjct: 411 LYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKM 470

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
              G++PN + Y  ++D   +A +  +   +  ++ D+GL PN  TY +L+    +A   
Sbjct: 471 DDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSI 530

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            + +S + +M+E G+  +V +Y TL+     +G   +A  +  +M   +    D   ++S
Sbjct: 531 YEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEM-VDKGMSLDKVVYTS 589

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I     +G +  A A+  +M+E G + +L+  T  I  +       +    L+ +   G
Sbjct: 590 LIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTG 649

Query: 477 ITPDDRFCGCLL 488
           ITPD     CL+
Sbjct: 650 ITPDKTAYNCLI 661



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 126/276 (45%), Gaps = 14/276 (5%)

Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
            F TL+S    + L + AV    R+      P+  T + ++    R     +   L++  
Sbjct: 135 VFDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEHL 194

Query: 262 RNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
                   PN F+   +I      G       ++  MKA+G  P+++TYN+L+D  G+  
Sbjct: 195 PA------PNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCG 248

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
              +V+ +  EM  +G + +  TY +L+  + +  + E   S + EMK  G+  +V   +
Sbjct: 249 ELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLS 308

Query: 380 TLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           T + A C + G   EA ++F  M+      P+ +T++S++      G++ +A  + +EM+
Sbjct: 309 TFVDAFCKE-GLVREAMKLFAQMR-VRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMV 366

Query: 439 EAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNR 471
             G  PN+   T ++      GK    DDV+  + R
Sbjct: 367 HQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMER 402



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 113/242 (46%), Gaps = 4/242 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V LY   +    K + LD+A+ L   M D G++P+ V ++T++         ++AV   
Sbjct: 443 DVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALL 502

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYG 281
            ++P  G  P+ +TY ++ID   +AG++  A   +D+ R  +  +DPN   ++TLI  + 
Sbjct: 503 HKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMR--ELGLDPNVQVYTTLIDGFC 560

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G+    +++  EM   G+  + + Y +L+D   +         +  +M + GL  +  
Sbjct: 561 KIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLY 620

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            Y   +  +      ++   V  EM   G+    T YN L+     +G  +EA  +  +M
Sbjct: 621 CYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEM 680

Query: 402 KS 403
           +S
Sbjct: 681 ES 682



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 113/273 (41%), Gaps = 42/273 (15%)

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           +S++D   RA    +A G +  A        P+ F TL+ L    G  D  +     ++ 
Sbjct: 112 ASLVDILHRAA---LALGPHRSAL-------PSVFDTLLSLLADHGLLDDAVRALARVRQ 161

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE---------------------------- 330
           + V PN  T N++L  + R ++   V+ +++                             
Sbjct: 162 LRVPPNTRTCNHILLRLARNRQGGLVRRLFEHLPAPNVFTFNIVIDFLCKQGELVEARAL 221

Query: 331 ---MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
              M   G SP+  TY SL+  YG+    E+   +  EM++ G    V  YN L+   + 
Sbjct: 222 FVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSK 281

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G+ ++A+  F +MK       +  T S+ +      G V EA  +F +M   G  PN F
Sbjct: 282 FGWIEKAYSYFGEMKRL-GVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEF 340

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             TSL+    KA R DD +  L+ +   G+ P+
Sbjct: 341 TYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPN 373



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 81/192 (42%), Gaps = 5/192 (2%)

Query: 113 SATEDDVFSVLRCLGDDFLEQDCVI---ILNNMTNPDTAALALTYF--TNKLKASKEVIL 167
           +  E +  ++L  + D  L+ + V    +++ +    +   A+++F    +L     V +
Sbjct: 492 AGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQV 551

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +  F K   L KA  L ++M+D+G+  D V +++LI           A     +M 
Sbjct: 552 YTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMI 611

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G   D   Y+  I  +     ++ A G+           D  A++ LI+ Y   GN +
Sbjct: 612 ETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNME 671

Query: 288 GCLNVYEEMKAI 299
              ++  EM+++
Sbjct: 672 EASSLQNEMESV 683



 Score = 40.0 bits (92), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 51/180 (28%)

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMK------SSENCQ--------------------- 408
           ++++TLL++ AD G  D+A      ++      ++  C                      
Sbjct: 134 SVFDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEH 193

Query: 409 ---PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              P+ +TF+ +I     +G++ EA A+F  M   G  P++    SLI  YGK    ++V
Sbjct: 194 LPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEV 253

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC------VEKSNSKLGYVVKL 519
                   EL +  + R  GC  +V+T         L+ C      +EK+ S  G + +L
Sbjct: 254 --------EL-LVSEMRKSGCAADVVTYNA------LINCFSKFGWIEKAYSYFGEMKRL 298


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 170/343 (49%), Gaps = 6/343 (1%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA-RMN 213
            +N+     + + Y+  +  F K    D A RL ++M + G++P    ++ +IS   +++
Sbjct: 220 MSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLD 279

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           N+ + A+  FE M    C PD  TY+ +I   G+AG ++ A+  Y   + E  + D    
Sbjct: 280 NV-HGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVM 338

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMT 332
           + +I   G AG  D  L ++EEM      PN++TYN ++  +  +K R  +V + ++ M 
Sbjct: 339 NNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMK 398

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
            +G+SP+  TY+ L+  + +    E  + +  EM EKG       Y +L+         D
Sbjct: 399 GSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYD 458

Query: 393 EAFEIFEDMKSSENCQPDSW-TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
            A E+F+++K  ENC   S   ++ MI      G++ +A  +F+EM + G  PN++   +
Sbjct: 459 LACELFQELK--ENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNA 516

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           L+    +A   D+ +  + ++ E G  PD      +LN + +T
Sbjct: 517 LMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKT 559



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 144/299 (48%), Gaps = 2/299 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA-RMNNLPNKAVEW 222
           + ++ N  +    K   LD   +LF++M      P+ VT++T+I       +  ++   W
Sbjct: 334 DTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSW 393

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           FERM   G  P   TYS +ID + +   +E A  L +    + +   P A+ +LI   G 
Sbjct: 394 FERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 453

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           A  +D    +++E+K      +   Y  ++  +G+A R      ++ EM+  G +PN   
Sbjct: 454 AKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYA 513

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +L+    RA   ++ L+  R+M+E G    +  YN +L   A  G    A E+  +MK
Sbjct: 514 YNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMK 573

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           +S   +PD+ +++++++  S  G   EA  +  EM   GFE +L   +S+++  GK  +
Sbjct: 574 NS-TIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKVDQ 631



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 164/360 (45%), Gaps = 40/360 (11%)

Query: 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLF----DDMLDRGVKPD 199
           N D  A     +TN ++   E  +    +K+F+   D ++A  +     D  L R V   
Sbjct: 42  NEDAVAALSPRYTNSVRVLDERFIR--ILKIFKWGPDAERALEVLMLRVDHWLVREVMKT 99

Query: 200 NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI------DAYGRAGNVEM 253
           +V            N+  +   W  +  ++    D  TY ++I      + YG     EM
Sbjct: 100 DVGV----------NVKMQFFRWAAKKRNY--QHDTSTYMALIHCLELVEQYG-----EM 142

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
              + +  R+    + P   S +I++ G A      + ++ ++KA   +P    YN+++ 
Sbjct: 143 WKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMII 202

Query: 314 TMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
            +    +  +V  +Y EM++ G   P+  TY++L+ A+ +    +  + +  EMKE GMQ
Sbjct: 203 MLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQ 262

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +  +Y  ++++   +     A  +FE+M+    C+PD +T++ +I      G++ EA  
Sbjct: 263 PTAKIYTMIISLFFKLDNVHGALSLFEEMRYM-YCRPDVFTYTELIRGLGKAGRIDEAYH 321

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            ++EM   G +P+  V+ ++I   GKA R DD    L    E+G++       C+ NV+T
Sbjct: 322 FYHEMQREGCKPDTVVMNNMINFLGKAGRLDD---GLKLFEEMGVS------HCIPNVVT 372



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 77/151 (50%), Gaps = 9/151 (5%)

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + ++R  G A+     ++++ ++K +  Q +   YN+++ M    G  ++  E++ +M +
Sbjct: 163 SQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSN 222

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
             +CQPD+ T+S++I+     G+   A  + NEM E G +P   + T +I  + K    D
Sbjct: 223 EGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFK---LD 279

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           +V  AL+   E+      R+  C  +V T T
Sbjct: 280 NVHGALSLFEEM------RYMYCRPDVFTYT 304


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 170/343 (49%), Gaps = 6/343 (1%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA-RMN 213
            +N+     + + Y+  +  F K    D A RL ++M + G++P    ++ +IS   +++
Sbjct: 220 MSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLD 279

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           N+ + A+  FE M    C PD  TY+ +I   G+AG ++ A+  Y   + E  + D    
Sbjct: 280 NV-HGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVM 338

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMT 332
           + +I   G AG  D  L ++EEM      PN++TYN ++  +  +K R  +V + ++ M 
Sbjct: 339 NNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMK 398

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
            +G+SP+  TY+ L+  + +    E  + +  EM EKG       Y +L+         D
Sbjct: 399 GSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYD 458

Query: 393 EAFEIFEDMKSSENCQPDSW-TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
            A E+F+++K  ENC   S   ++ MI      G++ +A  +F+EM + G  PN++   +
Sbjct: 459 LACELFQELK--ENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNA 516

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           L+    +A   D+ +  + ++ E G  PD      +LN + +T
Sbjct: 517 LMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKT 559



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 145/299 (48%), Gaps = 2/299 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEW 222
           + ++ N  +    K   LD   +LF++M      P+ VT++T+I +     +  ++   W
Sbjct: 334 DTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSW 393

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           FERM   G  P   TYS +ID + +   +E A  L +    + +   P A+ +LI   G 
Sbjct: 394 FERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 453

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           A  +D    +++E+K      +   Y  ++  +G+A R      ++ EM+  G +PN   
Sbjct: 454 AKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYA 513

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +L+    RA   ++ L+  R+M+E G    +  YN +L   A  G    A E+  +MK
Sbjct: 514 YNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMK 573

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           +S   +PD+ +++++++  S  G   EA  +  EM   GFE +L   +S+++  GK  +
Sbjct: 574 NS-TIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKVDQ 631



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 140/310 (45%), Gaps = 20/310 (6%)

Query: 133 QDC---VIILNNMTNPDTAALALTYFTNKLKASKE---------VILYNVTMK-VFRKCR 179
           +DC    +++NNM N    A  L    + LK  +E         V+ YN  +K +F    
Sbjct: 329 EDCKPDTVVMNNMINFLGKAGRLD---DGLKLFEEMGVSHCIPNVVTYNTIIKALFESKS 385

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
            + +    F+ M   G+ P   T+S LI      N   KA+   E M   G  P    Y 
Sbjct: 386 RVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYC 445

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           S+IDA G+A   ++A  L+   +          ++ +IK  G AG  D  +N+++EM  +
Sbjct: 446 SLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKL 505

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G  PN+  YN L+  + RA    +  T  ++M ++G  P+ N+Y  +L    +       
Sbjct: 506 GCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRA 565

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           + +   MK   ++     YNT+L+  +  G  +EA E+ ++M ++   + D  T+SS   
Sbjct: 566 MEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEM-NALGFEYDLITYSS--- 621

Query: 420 ICSCRGKVSE 429
           I    GKV +
Sbjct: 622 ILEAIGKVDQ 631



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 163/360 (45%), Gaps = 40/360 (11%)

Query: 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLF----DDMLDRGVKPD 199
           N D  A     +TN ++   E  +    +K+F+   D ++A  +     D  L R V   
Sbjct: 42  NEDAVAALSPRYTNSVRVLDERFIR--ILKIFKWGPDAERALEVLMLRVDHWLVREVMKT 99

Query: 200 NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI------DAYGRAGNVEM 253
           +V            N+  +   W  +  ++    D  TY ++I      + YG     EM
Sbjct: 100 DVGV----------NVKMQFFRWAAKKRNY--QHDTSTYMALIHCLELVEQYG-----EM 142

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
              + +  R+    + P   S +I++ G A      + ++ ++KA   +P    YN+++ 
Sbjct: 143 WKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMII 202

Query: 314 TMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
            +    +  +V  +Y EM++ G   P+  TY++L+ A+ +    +  + +  EMKE GMQ
Sbjct: 203 MLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQ 262

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +  +Y  ++++   +     A  +FE+M+    C+PD +T++ +I      G++ EA  
Sbjct: 263 PTAKIYTMIISLFFKLDNVHGALSLFEEMRYM-YCRPDVFTYTELIRGLGKAGRIDEAYH 321

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            ++EM     +P+  V+ ++I   GKA R DD    L    E+G++       C+ NV+T
Sbjct: 322 FYHEMQREDCKPDTVVMNNMINFLGKAGRLDD---GLKLFEEMGVS------HCIPNVVT 372



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 76/151 (50%), Gaps = 9/151 (5%)

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + ++R  G A+     ++++ ++K +  Q +   YN+++ M    G  ++  E++ +M +
Sbjct: 163 SQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSN 222

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
             +C PD+ T+S++I+     G+   A  + NEM E G +P   + T +I  + K    D
Sbjct: 223 EGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFK---LD 279

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           +V  AL+   E+      R+  C  +V T T
Sbjct: 280 NVHGALSLFEEM------RYMYCRPDVFTYT 304



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 51/223 (22%)

Query: 98  RYNSLVKLAADL-DSCSATEDDVFSVL-RCLGDDFLEQDCVIILNNMTNPDTAALALTYF 155
           RY+   +L  +L ++C ++   V++V+ + LG      D + + + M+            
Sbjct: 456 RYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMS------------ 503

Query: 156 TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
             KL  +  V  YN  M    +   LD+A      M + G  PD  +++ +++       
Sbjct: 504 --KLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGG 561

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
           P++A+E    M +    PDA++Y++++ A   AG  E A                   + 
Sbjct: 562 PHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEA-------------------AE 602

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
           L+K                EM A+G + ++ITY+++L+ +G+ 
Sbjct: 603 LMK----------------EMNALGFEYDLITYSSILEAIGKV 629


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 160/318 (50%), Gaps = 2/318 (0%)

Query: 163 KEVILYNVTMKVFRKCRDLDKAERLFDDML-DRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           +++  YN+  K       + +A  L   +  D    PD VTF TLI     N   N+A E
Sbjct: 366 RQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFE 425

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             E   + G + D  +YSSMI+ + + G    A  +Y     +  + + + ++ LI  + 
Sbjct: 426 ILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFC 485

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                +  + +Y EM + G  P +ITYN L+D + +A++  +  ++ KEM + G  P+  
Sbjct: 486 RVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIR 545

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TYASL+R   R +  +  L ++ E+ + G+Q+ V ++N L+      G  DEAF I+ +M
Sbjct: 546 TYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEM 605

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K  +NC P+  T+++++      G + +A +++  +L+ G +P++    + I+      R
Sbjct: 606 K-EKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNR 664

Query: 462 TDDVVRALNRLPELGITP 479
           T + V  LN +   GI P
Sbjct: 665 TPEGVLLLNEVLATGIMP 682



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 150/331 (45%), Gaps = 4/331 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ ++      D+D+A  LF  +  RGV PD VT+STL+S    ++  + A++  + MP
Sbjct: 161 YNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMP 220

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA--GN 285
           ++G   DA+ Y++++    R G  E A  ++++   +     PN  +  + L G    G 
Sbjct: 221 NYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPG-ASPNLATYKVMLDGLCKLGR 279

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F     V+  M A   + + +TY  L+  + R+        +Y +M   GL  + + Y S
Sbjct: 280 FKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNS 339

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L++ +       +    +      G++  +T YN +     D G   EA E+ + +++  
Sbjct: 340 LIKGFCEVGRTGEAWKFWDSTGFSGIR-QITTYNIMTKGLLDSGMVSEATELLKQLENDA 398

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           +C PD  TF ++I      G  + A  +  +   +G E ++F  +S+I  + K  RT D 
Sbjct: 399 SCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDA 458

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
                 + + G  P+      L+N   +  K
Sbjct: 459 NEVYKNMVKDGCKPNSHVYNALINGFCRVSK 489



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 127/256 (49%), Gaps = 7/256 (2%)

Query: 215 LPNKAVEWFERMPSF-GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW--RIDPN 271
           +P+ A+  F  +PS  GC+P   ++++++DA+ RA     A   +    +  +  RI PN
Sbjct: 98  MPDAALAAFRDLPSLLGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPN 157

Query: 272 --AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
              ++ +++     G+ D  ++++  ++  GV P+ +TY+ L+  + +  +      +  
Sbjct: 158 LQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLD 217

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLLAMCADV 388
           EM + G+  +   Y +LL    R    E  + V+ ++ ++ G   ++  Y  +L     +
Sbjct: 218 EMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKL 277

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G   EA E++  M ++ N Q D+ T+  +I      G V  A  ++++M++AG   ++ V
Sbjct: 278 GRFKEAGEVWSRMMAN-NHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSV 336

Query: 449 LTSLIQCYGKAQRTDD 464
             SLI+ + +  RT +
Sbjct: 337 YNSLIKGFCEVGRTGE 352



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 92/192 (47%), Gaps = 2/192 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I YN  +    K     +A  L  +ML+RG KPD  T+++LI     +   + A+  ++
Sbjct: 509 IITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWD 568

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G   D + ++ +I     AG V+ AF +Y   + +    +   ++TL+  +   G
Sbjct: 569 EILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIG 628

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           + D   +++  +   G+KP+++TYN  +  +    R  +   +  E+   G+ P   T++
Sbjct: 629 SIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWS 688

Query: 345 SLLRAYGRARYG 356
            L+RA    +YG
Sbjct: 689 ILVRAV--IKYG 698



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/254 (18%), Positives = 97/254 (38%), Gaps = 40/254 (15%)

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPWQVK 325
           R   +A   ++  +  A   D  L  + ++ ++ G  P + ++N LLD   RA+R     
Sbjct: 80  RFSESAALVVLSAFSRALMPDAALAAFRDLPSLLGCNPGVRSHNTLLDAFVRARRYSDAD 139

Query: 326 TIYKEMTDNG----LSPNWNTYASLLRAY------------------------------- 350
             +  ++       ++PN  TY  +LR+                                
Sbjct: 140 AFFASLSHGAFGRRIAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTL 199

Query: 351 --GRARYGE--DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
             G A++ +  + L +  EM   G+Q     YN LL+ C   G  ++A +++E +     
Sbjct: 200 MSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPG 259

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             P+  T+  M+      G+  EA  +++ M+    + +      LI    ++   D   
Sbjct: 260 ASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAA 319

Query: 467 RALNRLPELGITPD 480
           R  + + + G+  D
Sbjct: 320 RVYSDMVKAGLVLD 333



 Score = 46.2 bits (108), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  ++ YN  M  F +   +DKA  L+  +LD G+KPD VT++T I      N   + V 
Sbjct: 611 SPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVL 670

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
               + + G  P  +T+S ++ A  + G +++
Sbjct: 671 LLNEVLATGIMPTVITWSILVRAVIKYGPIQI 702


>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 905

 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 175/355 (49%), Gaps = 13/355 (3%)

Query: 145 PDTAALALTYFTNK-----LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD 199
           PD A  AL +F ++     LK   +  L    +++F   R+LD    L           D
Sbjct: 157 PDAAYQALFHFDSRATALLLKDLSKAGLGFRAVEIFEWLRNLDANHPLASLC-------D 209

Query: 200 NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD 259
             T++ +IS        ++A++  + M     + +  TY+++++   + GN  +A   Y+
Sbjct: 210 VYTYTAMISMCIYQQDVDRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTYN 269

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
             R +    +   ++TLI +YG  G ++  + V   MK  GV+P + TYN L+       
Sbjct: 270 HMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMCG 329

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
           +P +   +YK M D G SPN  TY +L+ AYG+A   +  + V++EM  KG + SV  Y+
Sbjct: 330 QPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYS 389

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
           +L++ C   G  + A E+F +M + E C P++ T++S+IT C+   +  +A  +F +M +
Sbjct: 390 SLISACEKAGQWELALELFNEM-AGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQK 448

Query: 440 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
            G  P++   T+LI  Y K  +    + A  ++      PD      +++ + +T
Sbjct: 449 GGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAIIDTLWET 503



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 122/259 (47%), Gaps = 3/259 (1%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A   V+ YN  + V+ K    ++  ++   M   GV+P   T++TLI    M   P +A+
Sbjct: 276 ACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQPREAM 335

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
             ++RM   G  P+A TY+++I AYG+AG ++    ++    ++        +S+LI   
Sbjct: 336 AVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISAC 395

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
             AG ++  L ++ EM   G  PN +TYN+L+    +  +  +   ++++M   G +P+ 
Sbjct: 396 EKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGCTPDV 455

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT---DEAFEI 397
            T+ +L+ +Y +       L  Y +M+ +  +    ++N ++    + G      +A  +
Sbjct: 456 VTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAIIDTLWETGVIWAQRKALAL 515

Query: 398 FEDMKSSENCQPDSWTFSS 416
           F+      + +   W  S 
Sbjct: 516 FQQAVEDGHFKQQRWDTSG 534


>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
 gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
          Length = 677

 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 184/360 (51%), Gaps = 8/360 (2%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           + K   +V+ Y   M  +     ++  + +FD M+  GVKP+ V +++L+       +  
Sbjct: 181 RTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHR 240

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +A+  F  +   G  PD ++Y+S+++AYGR+   E A  ++++ +    + +  +++ LI
Sbjct: 241 EALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALI 300

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             YG+AG     + +  EM+  G++P++++ + LL   GR ++  +++TI +     G+ 
Sbjct: 301 DAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGID 360

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
            N   Y S +++Y      E  L +Y  M+E  ++     YN L++  + +G   E+   
Sbjct: 361 LNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRF 420

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY- 456
           FEDM  S+        +SS+I     +GK+SEAE+ F+ M ++G  P++   T+LIQ Y 
Sbjct: 421 FEDMVDSKVSSTKE-VYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYN 479

Query: 457 --GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 513
             G  +R  D+ +    +   GI PD   C  L+    +  + E + +L+E ++K +  L
Sbjct: 480 AGGGWKRAWDLFK---EMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPL 536



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 140/316 (44%), Gaps = 5/316 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +       +  KA  L   M + GV PD VT + ++S  +     +KA+ +FE M 
Sbjct: 84  YNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMK 143

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGN 285
                 D  T + +I    + G    A  L++  R  + +  P+   +++++  Y   G 
Sbjct: 144 GANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQ 203

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            + C  +++ M A GVKPN++ YN+LL          +   I+  +  NGL P+  +Y S
Sbjct: 204 VENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTS 263

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           LL AYGR+   E    V+ +MK+   + +   YN L+      G   EA  +  +M+  +
Sbjct: 264 LLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEME-KD 322

Query: 406 NCQPDSWTFSSMITICS-CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
             QPD  + S+++  C  CR +++  E +       G + N     S I+ Y      + 
Sbjct: 323 GIQPDVVSISTLLAACGRCR-QITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEK 381

Query: 465 VVRALNRLPELGITPD 480
            +     + E  + PD
Sbjct: 382 ALELYTSMRESNVKPD 397



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 143/314 (45%), Gaps = 12/314 (3%)

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEE 295
           Y  MI  Y R   V+ A GL+     ++WR  P+A  +++LI  +  AG +   +N+ E+
Sbjct: 14  YGMMIRLYARHNQVDQARGLFFEM--QEWRCKPDADIYNSLIHAHSRAGQWRWAINIMED 71

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M    + P   TYNN+++  G A    +   + K+MT+NG+ P+  T+  +L A      
Sbjct: 72  MLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQ 131

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTF 414
               +S +  MK   +       N ++     +G   EA E+F  M+     C PD  T+
Sbjct: 132 YSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTY 191

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +S++      G+V   +A+F+ M+  G +PN+    SL+  Y       + +   N + +
Sbjct: 192 TSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKK 251

Query: 475 LGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS----KLGYVVKLLLEEQDIEGDF 530
            G+ PD      LLN   ++ + E  + V    K NS    K+ Y    L++     G  
Sbjct: 252 NGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSY--NALIDAYGSAGML 309

Query: 531 KKEATELFNSISKD 544
            KEA  L + + KD
Sbjct: 310 -KEAVGLLHEMEKD 322



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 143/316 (45%), Gaps = 3/316 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y + ++++ +   +D+A  LF +M +   KPD   +++LI           A+   E M
Sbjct: 13  IYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDM 72

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
                 P   TY+++I+A G AGN + A  L  +        D    + ++        +
Sbjct: 73  LRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQY 132

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS--PNWNTYA 344
              ++ +E MK   V  +  T N ++  + +  +  +   ++  M +      P+  TY 
Sbjct: 133 SKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYT 192

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           S++ +Y      E+  +++  M  +G++ ++  YN+LL   A  G   EA  IF  +K +
Sbjct: 193 SIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKN 252

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              +PD  +++S++       +  +A  +FN+M +   +PN     +LI  YG A    +
Sbjct: 253 -GLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKE 311

Query: 465 VVRALNRLPELGITPD 480
            V  L+ + + GI PD
Sbjct: 312 AVGLLHEMEKDGIQPD 327



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 128/288 (44%), Gaps = 1/288 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  +K +    D +KA  L+  M +  VKPD VT++ LIS +       +++ +FE 
Sbjct: 364 VAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFED 423

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M           YSS+I +Y + G +  A   +   +      D   ++TLI+ Y   G 
Sbjct: 424 MVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGG 483

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           +    ++++EM+  G+ P+ I  ++L++   +   P +V  + + M    +  N  +Y  
Sbjct: 484 WKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYFE 543

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++ +    R  +    +   +      +SV   N +L      G T+   ++F  M +S 
Sbjct: 544 IIASCTMIRDWKTASEMIEYLDSSLSSISVGTLNHVLNFLGKCGKTENMMKLFYKMVTSC 603

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           +    S T++ ++      GK  +   +   M ++G  P L++  +++
Sbjct: 604 STVGLS-TYAVVLRNLLVVGKWRKYIEVLQWMEDSGVHPTLYMFQNVL 650



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 108/232 (46%), Gaps = 14/232 (6%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
           +K+ ++KEV  Y+  +  + K   L +AE  F  M   G  PD +T++TLI         
Sbjct: 427 SKVSSTKEV--YSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGW 484

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR------NEKWRIDP 270
            +A + F+ M   G  PDA+  SS+++A+ + G  E    L +  +      N+K   + 
Sbjct: 485 KRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYFEI 544

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
            A  T+I+ + TA      L+      ++G      T N++L+ +G+  +   +  ++ +
Sbjct: 545 IASCTMIRDWKTASEMIEYLDSSLSSISVG------TLNHVLNFLGKCGKTENMMKLFYK 598

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           M  +  +   +TYA +LR           + V + M++ G+  ++ ++  +L
Sbjct: 599 MVTSCSTVGLSTYAVVLRNLLVVGKWRKYIEVLQWMEDSGVHPTLYMFQNVL 650


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 162/325 (49%), Gaps = 1/325 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  + VF K R   +A ++  +M   G  P +VT+++LIS      L  +A++   +
Sbjct: 300 VTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQ 359

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  PD  TY++++  + +AG  + A  ++   R    + +   F+ LIK++G  G 
Sbjct: 360 MVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGK 419

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F   + V++++K     P+++T+N LL   G+     QV  I+KEM   G     +T+ +
Sbjct: 420 FAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNT 479

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ AY R    +  ++VY+ M E G+   ++ YN +LA  A  G  +++ ++  +M+   
Sbjct: 480 LISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGR 539

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
            C+P+  ++SS++   +   ++    A   E+     E +  +L +L+    K+    + 
Sbjct: 540 -CKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIET 598

Query: 466 VRALNRLPELGITPDDRFCGCLLNV 490
            RA   L   GI+PD      +L++
Sbjct: 599 ERAFLELRRRGISPDITTLNAMLSI 623



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 150/293 (51%), Gaps = 8/293 (2%)

Query: 170 VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
           V +K+  K   +  A  L   + + GV  D   ++ LI+    +     AV  F +M   
Sbjct: 163 VIIKILGKAGRVSSAASLLLALQNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQD 222

Query: 230 GCDPDALTYSSMIDAYGRAG----NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           GC+P  +TY+ +++ YG+ G    NV     L +  R+     D   ++TLI        
Sbjct: 223 GCNPTLITYNVVLNVYGKMGMPWSNVT---ALVEAMRSRGVAPDLYTYNTLISCCRRGSL 279

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           ++  ++++++MK  G  P+ +TYN LLD  G+++RP +   + +EM  NG SP   TY S
Sbjct: 280 YEEAVHLFQQMKLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNS 339

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ AY +    E+ L +  +M  KG++  V  Y TLL+     G  D A ++F +M++  
Sbjct: 340 LISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAV- 398

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
            C+P+  TF+++I +   RGK +E   +F+++      P++    +L+  +G+
Sbjct: 399 GCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQ 451



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 145/318 (45%), Gaps = 2/318 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP-NKAVEW 222
           +V  Y   +  +        A  LF+ M   G  P  +T++ +++      +P +     
Sbjct: 192 DVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWSNVTAL 251

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            E M S G  PD  TY+++I    R    E A  L+ + + E +  D   ++ L+ ++G 
Sbjct: 252 VEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDVFGK 311

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           +      + V +EM+A G  P  +TYN+L+    +     +   +  +M   G+ P+  T
Sbjct: 312 SRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFT 371

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +LL  + +A   +  + V+ EM+  G + ++  +N L+ M  + G   E  ++F+D+K
Sbjct: 372 YTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIK 431

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
              NC PD  T+++++ +    G  S+   +F EM  AGF        +LI  Y +    
Sbjct: 432 LC-NCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSF 490

Query: 463 DDVVRALNRLPELGITPD 480
           D  +     + E G+ PD
Sbjct: 491 DQAMAVYKSMLEAGVVPD 508



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 126/241 (52%), Gaps = 2/241 (0%)

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I   G+AG V  A  L    +N+   ID  A++ LI  Y ++G +   +N++ +M+  G
Sbjct: 164 IIKILGKAGRVSSAASLLLALQNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDG 223

Query: 301 VKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
             P +ITYN +L+  G+   PW  V  + + M   G++P+  TY +L+    R    E+ 
Sbjct: 224 CNPTLITYNVVLNVYGKMGMPWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEA 283

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           + ++++MK +G       YN LL +        EA ++ ++M+++    P S T++S+I+
Sbjct: 284 VHLFQQMKLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEAN-GFSPTSVTYNSLIS 342

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             +  G + EA  +  +M+  G +P++F  T+L+  + KA + D  ++    +  +G  P
Sbjct: 343 AYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKP 402

Query: 480 D 480
           +
Sbjct: 403 N 403



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/435 (20%), Positives = 167/435 (38%), Gaps = 91/435 (20%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y   +  F K    D A ++F +M   G KP+  TF+ LI          + ++ F
Sbjct: 368 DVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVF 427

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + +    C PD +T+++++  +G+ G      G++   +   +  + + F+TLI  Y   
Sbjct: 428 DDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRC 487

Query: 284 GNFDGCLNVYEEMKAIGV-----------------------------------KPNMITY 308
           G+FD  + VY+ M   GV                                   KPN ++Y
Sbjct: 488 GSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSY 547

Query: 309 NNLLDTMGRAKRPWQ-------------------VKTI----------------YKEMTD 333
           ++LL      K   +                   +KT+                + E+  
Sbjct: 548 SSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRR 607

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
            G+SP+  T  ++L  YGR +       +   M E     S+T YN+L+ M +      +
Sbjct: 608 RGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQK 667

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           + EI  ++   +  +PD  +++++I      G++ EA  +F+EM ++   P++    + I
Sbjct: 668 SEEILREVL-EKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFI 726

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPD--------------------DRFCGCLLNVMTQ 493
             Y       + +  +  + + G  PD                    + F   L N+   
Sbjct: 727 ATYAADSMFAEAIDVVRYMIKQGCKPDQNTYNSIVDWYCKLDQRHEANSFVKNLSNLDPH 786

Query: 494 TPKEELGKLVECVEK 508
             KEE  +L+E + K
Sbjct: 787 VSKEEESRLLERIAK 801



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 95/207 (45%), Gaps = 3/207 (1%)

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL---LDTMGRAKRPWQVKTIYKEMT 332
           +IK  G +   D  L V+  ++      N+ + + +   +  +G+A R     ++   + 
Sbjct: 126 IIKALGFSNKCDLALAVFHWVRTNNSNTNLFSSSAIPVIIKILGKAGRVSSAASLLLALQ 185

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
           ++G+  +   Y  L+ AY  +    D ++++ +M++ G   ++  YN +L +   +G   
Sbjct: 186 NDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPW 245

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
                  +   S    PD +T++++I+ C       EA  +F +M   GF P+     +L
Sbjct: 246 SNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNAL 305

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITP 479
           +  +GK++R  + ++ L  +   G +P
Sbjct: 306 LDVFGKSRRPQEAMKVLQEMEANGFSP 332



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 60/126 (47%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
           F ++ + +  +  YN  M ++ +  +  K+E +  ++L++G+KPD ++++T+I     N 
Sbjct: 639 FMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNG 698

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
              +A   F  M      PD +TY++ I  Y        A  +      +  + D N ++
Sbjct: 699 RMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYN 758

Query: 275 TLIKLY 280
           +++  Y
Sbjct: 759 SIVDWY 764


>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 157/315 (49%), Gaps = 15/315 (4%)

Query: 123 LRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLD 182
           LR LGD     DCV     M               +L+ +  ++ ++  +     CR + 
Sbjct: 101 LRALGDAGRIDDCVAAYEAM------------LACQLRPT--IVTFSTLISRAGACRRVR 146

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
            AER F +ML+ G+ PD    ++LI+       P++A++ F++M  +G  P  +T++++I
Sbjct: 147 LAERFFREMLEAGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLI 206

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
           DA GRAG+++ A  ++ R        +   FS LI  +   G  D   +  +EM+A G++
Sbjct: 207 DACGRAGDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLE 266

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           PN +TY+ L++  GRA +  +      EM   G+ PN  T+ +L+ A G+ +  E +  +
Sbjct: 267 PNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELEWSFKL 326

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
           ++EM+E+G   +    + L+  C      D AF + E M      +P   T++S++T C+
Sbjct: 327 FKEMRERGTVPNGVTCSALMDACLKADELDLAFAVLEHMLDV-GIEPTEVTYTSLLTQCA 385

Query: 423 CRGKVSEAEAMFNEM 437
             G+   A  + +E+
Sbjct: 386 RLGQADRAGIVLDEL 400



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 150/308 (48%), Gaps = 8/308 (2%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           NV ++       +D     ++ ML   ++P  VTFSTLIS A        A  +F  M  
Sbjct: 98  NVFLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLE 157

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
            G  PD    +S+I+A+ +AG+ + A  ++D+    ++ + P+   F+TLI   G AG+ 
Sbjct: 158 AGITPDVQAINSLINAFAKAGSPDQALKVFDQM--SRYGVTPSVITFNTLIDACGRAGDI 215

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    V+  +   G+ PN  T++ L+ +     +  +  +  +EM   GL PN  TY++L
Sbjct: 216 DRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSAL 275

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + A GRA           EM   G++ +V  + TL+  C      + +F++F++M+    
Sbjct: 276 INACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELEWSFKLFKEMRE-RG 334

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI-QC--YGKAQRTD 463
             P+  T S+++  C    ++  A A+   ML+ G EP     TSL+ QC   G+A R  
Sbjct: 335 TVPNGVTCSALMDACLKADELDLAFAVLEHMLDVGIEPTEVTYTSLLTQCARLGQADRAG 394

Query: 464 DVVRALNR 471
            V+  LN+
Sbjct: 395 IVLDELNK 402



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 140/290 (48%), Gaps = 11/290 (3%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           GV   NV    L    R+++     V  +E M +    P  +T+S++I   G    V +A
Sbjct: 93  GVPACNVFLRALGDAGRIDDC----VAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLA 148

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
              +          D  A ++LI  +  AG+ D  L V+++M   GV P++IT+N L+D 
Sbjct: 149 ERFFREMLEAGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDA 208

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
            GRA    + + ++  ++  GLSPN  T+++L+ ++      ++  S  +EM+ +G++ +
Sbjct: 209 CGRAGDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPN 268

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE--- 431
              Y+ L+  C   G    AF+  ++M  +   +P+  T++++I  C   GK  E E   
Sbjct: 269 RVTYSALINACGRAGQLARAFQTLDEMFGT-GIEPNVVTWTTLIDAC---GKGKELEWSF 324

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
            +F EM E G  PN    ++L+    KA   D     L  + ++GI P +
Sbjct: 325 KLFKEMRERGTVPNGVTCSALMDACLKADELDLAFAVLEHMLDVGIEPTE 374



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 7/111 (6%)

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ--PDSWTFSSMIT-ICSCRGKVS 428
           Q  V   N  L    D G  D+    +E M +   CQ  P   TFS++I+   +CR +V 
Sbjct: 91  QGGVPACNVFLRALGDAGRIDDCVAAYEAMLA---CQLRPTIVTFSTLISRAGACR-RVR 146

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
            AE  F EMLEAG  P++  + SLI  + KA   D  ++  +++   G+TP
Sbjct: 147 LAERFFREMLEAGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTP 197



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 2/146 (1%)

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER--MPSF 229
           +++F +   +D A ++ + M++R   PD  T+  L++        +KAVE  ER      
Sbjct: 549 LQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGH 608

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
           G + + LTYS+++ A GRA  +  AF +    R    +     +  L+++   + +    
Sbjct: 609 GSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRDSKAA 668

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTM 315
           + V+E M+  GV+P + +Y +LL  +
Sbjct: 669 VEVFEAMETEGVRPGVRSYTSLLKAI 694



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 2/146 (1%)

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           S ++  +G+A  V+ AF + +     +   D   +  L+    TAG  D  + + E  +A
Sbjct: 546 SDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRA 605

Query: 299 --IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
              G + N +TY+ LL   GRAK+  +   I + M + G+ P   TY +L+     +R  
Sbjct: 606 EGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRDS 665

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLL 382
           +  + V+  M+ +G++  V  Y +LL
Sbjct: 666 KAAVEVFEAMETEGVRPGVRSYTSLL 691



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 90/214 (42%), Gaps = 11/214 (5%)

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           +A+T        G +G    A G         WR++    S L++L+G A   D    V 
Sbjct: 512 EAITRGGATTGEGGSGETATARG------RGAWRMNRKLESDLLQLFGQADQVDAAFKVL 565

Query: 294 EEMKAIGVKPNMITYN---NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
           E M      P+  T+    N +DT G   +  ++    +    +G   N  TY++LL A 
Sbjct: 566 EGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSR-AEGHGSEINELTYSALLGAC 624

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
           GRA+       + + M+E G++ +   Y  L+ +C     +  A E+FE M+ +E  +P 
Sbjct: 625 GRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRDSKAAVEVFEAME-TEGVRPG 683

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
             +++S++   S    +         MLE    P
Sbjct: 684 VRSYTSLLKAISEENTLRTRALQRTRMLETRRSP 717



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 21/178 (11%)

Query: 292  VYEEMKAIGVKPNMITYNNLLDT---MGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLL 347
            V++EM++ GV+P++  YN L++T   +G   R    V+ +  +    GL P+  TY SL+
Sbjct: 881  VFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLI 940

Query: 348  RAYGRA---RYGEDTLSVYREMKEKGMQLS-------VTLYNTLLA--MCADVGYTDEAF 395
            +A  RA   R  E+   ++  M+++    S       VT  + + A  M  D G    A 
Sbjct: 941  KAAARAVPPRV-EEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYG---RAL 996

Query: 396  EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
            EI+    S+    P   +  + +  C   G V  A  +++ M E G  PN   L  L+
Sbjct: 997  EIWRQQLSA-GVAPGPRSTRAALAACGGAGDVDTALQVYDVMREGGIRPNSRALLDLV 1053



 Score = 43.5 bits (101), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 39/79 (49%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y+  +    + + L +A R+   M + GVKP   T+  L+   R +     AVE FE 
Sbjct: 615 LTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRDSKAAVEVFEA 674

Query: 226 MPSFGCDPDALTYSSMIDA 244
           M + G  P   +Y+S++ A
Sbjct: 675 METEGVRPGVRSYTSLLKA 693



 Score = 42.7 bits (99), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 37/221 (16%)

Query: 187  LFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERM----PSFGCDPDALTYSSM 241
            +F +M  RGV+PD   ++ L+ +CA +    ++A+     M       G  PDA+TY+S+
Sbjct: 881  VFQEMRSRGVRPDLRAYNALVNTCADLGEF-DRALGVVRLMVDDGEGGGLQPDAVTYTSL 939

Query: 242  IDAYGRA--GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            I A  RA    VE A  ++   +        N FST                        
Sbjct: 940  IKAAARAVPPRVEEAEEIFATMQQRT-----NHFSTF----------------------- 971

Query: 300  GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
              +P  +TY +L+     A+   +   I+++    G++P   +  + L A G A   +  
Sbjct: 972  -ARPTEVTYAHLMRASVMAEDYGRALEIWRQQLSAGVAPGPRSTRAALAACGGAGDVDTA 1030

Query: 360  LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            L VY  M+E G++ +      L+ +C   G    A  I  +
Sbjct: 1031 LQVYDVMREGGIRPNSRALLDLVNLCRANGLQSVAARIMRE 1071


>gi|298712182|emb|CBJ33054.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 903

 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 145/331 (43%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL+L     K      VI YN  +    KC + D+A  L  +M +RG+ PD +TF++ I+
Sbjct: 476 ALSLLRDMPKRGVKPVVISYNTVISACGKCGEGDQALALLREMPERGLMPDVITFNSAIA 535

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               +  P+ AV     MP  G   DA+TYSS +     AG  E A  L    +      
Sbjct: 536 ALSNSGRPDDAVRLMREMPRAGVAADAITYSSALTGLAHAGRWEQALSLLREMQGAGVSP 595

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
               ++  I+  G AG  D  L +  EM   GV PN+ +Y+  +   G+  R  Q   + 
Sbjct: 596 TVICYTAAIRACGEAGKGDEALLLLREMPTAGVTPNLFSYSATISACGKDGRWEQGLALL 655

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            EM   GL+PN   Y + +   G     E  ++ +R M   G+Q +V  Y + ++  A  
Sbjct: 656 NEMPALGLTPNEFCYTAAITGCGIGGQWERAVATFRSMIASGIQPTVVGYTSAVSALAHC 715

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G  D A E+  +MK     +P+  T++++I  C   G+      +  +M  AG  P L  
Sbjct: 716 GEVDLALELLSEMKEEAGIEPNEQTYAAVILACGNGGQGHLVAQVQRDMASAGITPRLTG 775

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             S I+  G+     +    L  +   G+ P
Sbjct: 776 YLSAIRASGECGNWSEATSLLGEMEAAGVPP 806



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 145/307 (47%), Gaps = 6/307 (1%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP-----NKAVEWFERMPSFGCDPD 234
           +LDKAE           K      ST +    ++ +       +A++   RM   G  P+
Sbjct: 99  ELDKAELAEGRATTNNAKAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPN 158

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
           +   ++ +DA G+AG V+ A GL   AR     +D  +++  I    T G+++  L++  
Sbjct: 159 SYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIR 218

Query: 295 EMKA-IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
           EM+A  G+KPN ITY   +   GR  +  +  ++  EM D G+    + Y+++  A+ R 
Sbjct: 219 EMEAEYGIKPNHITYQAAIKVCGRCGKADEAASLLIEMKDGGVPLKTSVYSAVFNAFRRV 278

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
            + +   S  RE+ +  ++ +V  YN  +  C D G  +EA ++   M+     +PD  T
Sbjct: 279 DHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEPDVVT 338

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           ++ ++  C   G+  +A  +F EM E G +P++   T+ I   G    +++ +     + 
Sbjct: 339 YNIVVAACGKAGQGEKAIEIFREMSEVGIKPDVISFTTAISACGSCGLSEEALSIFREME 398

Query: 474 ELGITPD 480
             G+ P+
Sbjct: 399 RAGVRPN 405



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 142/322 (44%), Gaps = 5/322 (1%)

Query: 199 DNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
           D  +++T +S   +     +A+     MP  G  P  ++Y+++I A G+ G  + A  L 
Sbjct: 456 DACSYNTALSACEVGEQWGRALSLLRDMPKRGVKPVVISYNTVISACGKCGEGDQALALL 515

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
                     D   F++ I     +G  D  + +  EM   GV  + ITY++ L  +  A
Sbjct: 516 REMPERGLMPDVITFNSAIAALSNSGRPDDAVRLMREMPRAGVAADAITYSSALTGLAHA 575

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
            R  Q  ++ +EM   G+SP    Y + +RA G A  G++ L + REM   G+  ++  Y
Sbjct: 576 GRWEQALSLLREMQGAGVSPTVICYTAAIRACGEAGKGDEALLLLREMPTAGVTPNLFSY 635

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           +  ++ C   G  ++   +  +M +     P+ + +++ IT C   G+   A A F  M+
Sbjct: 636 SATISACGKDGRWEQGLALLNEMPAL-GLTPNEFCYTAAITGCGIGGQWERAVATFRSMI 694

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP-ELGITPDDRFCGCLLNVMTQTPKE 497
            +G +P +   TS +         D  +  L+ +  E GI P+++       V+      
Sbjct: 695 ASGIQPTVVGYTSAVSALAHCGEVDLALELLSEMKEEAGIEPNEQT---YAAVILACGNG 751

Query: 498 ELGKLVECVEKSNSKLGYVVKL 519
             G LV  V++  +  G   +L
Sbjct: 752 GQGHLVAQVQRDMASAGITPRL 773



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 157/337 (46%), Gaps = 23/337 (6%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDM-LDRGVKPDNVTFSTLIS-CARMNNLPNKAVE 221
           +V+ YN  +       D + A  +  +M  + G+KP+++T+   I  C R     ++A  
Sbjct: 193 DVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAAIKVCGRCGK-ADEAAS 251

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
               M   G       YS++ +A+ R  + + A        +  W + PN F+  + +  
Sbjct: 252 LLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHD--WPVKPNVFNYNLAICT 309

Query: 282 TA--GNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
               G ++  L++   M+ +G V+P+++TYN ++   G+A +  +   I++EM++ G+ P
Sbjct: 310 CTDCGEWEEALDLLHFMREVGGVEPDVVTYNIVVAACGKAGQGEKAIEIFREMSEVGIKP 369

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  ++ + + A G     E+ LS++REM+  G++ ++  +N +++ C   G  +EA + F
Sbjct: 370 DVISFTTAISACGSCGLSEEALSIFREMERAGVRPNIITHNAVMSACIAAGQWEEALDFF 429

Query: 399 EDMKSSENCQ---------------PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
            ++                       D+ ++++ ++ C    +   A ++  +M + G +
Sbjct: 430 TEVVDGSGAANGGGGGGPPPDPVEVADACSYNTALSACEVGEQWGRALSLLRDMPKRGVK 489

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           P +    ++I   GK    D  +  L  +PE G+ PD
Sbjct: 490 PVVISYNTVISACGKCGEGDQALALLREMPERGLMPD 526



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 138/337 (40%), Gaps = 7/337 (2%)

Query: 113 SATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTA-----ALALTYFTNKLKASKEVIL 167
           S   DD   ++R +    +  D +   + +T    A     AL+L         S  VI 
Sbjct: 540 SGRPDDAVRLMREMPRAGVAADAITYSSALTGLAHAGRWEQALSLLREMQGAGVSPTVIC 599

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   ++   +    D+A  L  +M   GV P+  ++S  IS    +    + +     MP
Sbjct: 600 YTAAIRACGEAGKGDEALLLLREMPTAGVTPNLFSYSATISACGKDGRWEQGLALLNEMP 659

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  P+   Y++ I   G  G  E A   +        +     +++ +      G  D
Sbjct: 660 ALGLTPNEFCYTAAITGCGIGGQWERAVATFRSMIASGIQPTVVGYTSAVSALAHCGEVD 719

Query: 288 GCLNVYEEMKA-IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
             L +  EMK   G++PN  TY  ++   G   +   V  + ++M   G++P    Y S 
Sbjct: 720 LALELLSEMKEEAGIEPNEQTYAAVILACGNGGQGHLVAQVQRDMASAGITPRLTGYLSA 779

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +RA G      +  S+  EM+  G+  +V+ YN  +  C   G   EA ++ ++M   + 
Sbjct: 780 IRASGECGNWSEATSLLGEMEAAGVPPTVSCYNAAITACGKSGKWQEALDLLDEMP-GKG 838

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
              DS T S+ I+ C   G+  +A  +  EMLE   E
Sbjct: 839 LVRDSGTLSAAISACQKAGRGVKAAGLVEEMLEMARE 875


>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 156/312 (50%), Gaps = 2/312 (0%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           +A  +F+ M + G+ P  VT++ ++    +M    +  +E  + M S G + D  T +++
Sbjct: 255 RAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTV 314

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I A GR G ++ A   +D  +   ++     ++++++++G AG +   LN+ +EM+    
Sbjct: 315 ISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNC 374

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           +P+ ITYN L+    RA    +   +   M   G+ PN  TY +++ AYG+A   +  L 
Sbjct: 375 EPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALE 434

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           V+ +MKE G   +V  YN +L +      +++  +I  DMK +  C PD  T+++M+ +C
Sbjct: 435 VFGQMKELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLN-GCPPDRITWNTMLAVC 493

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
             +GK      +  EM   GFEP+     +LI  YG+     DV +    +   G TP  
Sbjct: 494 GEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCI 553

Query: 482 RFCGCLLNVMTQ 493
                LLN + +
Sbjct: 554 TTYNALLNALAR 565



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 154/297 (51%), Gaps = 15/297 (5%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           LD+A R FDD+   G KP   T+++++       +  +A+   + M    C+PDA+TY+ 
Sbjct: 324 LDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNE 383

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKA 298
           ++ AY RAG  +    + D   ++   + PNA  ++T+I  YG AG+ D  L V+ +MK 
Sbjct: 384 LVAAYVRAGFHDEGAAVIDTMASKG--VMPNAITYTTVINAYGKAGDADKALEVFGQMKE 441

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRARY 355
           +G  PN+ TYNN+L  +G+  R   +  I  +M  NG  P+   WNT  ++    G+ ++
Sbjct: 442 LGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKF 501

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
               L   REMK  G +     +NTL++     G   +  +++ +M ++    P   T++
Sbjct: 502 VSQVL---REMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAA-GFTPCITTYN 557

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           +++   + RG    AE++  +M + GF+PN    + L+ CY KA      VR L ++
Sbjct: 558 ALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGN----VRGLEKV 610



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 142/297 (47%), Gaps = 6/297 (2%)

Query: 165 VILYNVTMKVFRKC-RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++ YNV + V+ K  R       L D+M  +G++ D  T +T+IS      + ++A  +F
Sbjct: 272 LVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTVISACGREGILDEARRFF 331

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + +   G  P   TY+SM+  +G+AG    A  +     +     D   ++ L+  Y  A
Sbjct: 332 DDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRA 391

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D    V + M + GV PN ITY  +++  G+A    +   ++ +M + G  PN  TY
Sbjct: 392 GFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTY 451

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            ++L   G+    ED + +  +MK  G       +NT+LA+C + G      ++  +MK 
Sbjct: 452 NNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMK- 510

Query: 404 SENC--QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
             NC  +PD  TF+++I+     G   +   M+ EM+ AGF P +    +L+    +
Sbjct: 511 --NCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNALAR 565



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 118/241 (48%), Gaps = 2/241 (0%)

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           M+   GR     +A  L+D    E++ +D  A +T++  Y   G +   + ++E+MK  G
Sbjct: 208 MVKMLGRESQYSIASKLFDIIPVEEYSLDVKACTTVLHAYARTGKYKRAIEIFEKMKETG 267

Query: 301 VKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           + P ++TYN +LD  G+  R W  +  +  EM   GL  +  T  +++ A GR    ++ 
Sbjct: 268 LDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTVISACGREGILDEA 327

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
              + ++K  G +     YN++L +    G   EA  I ++M+ + NC+PD+ T++ ++ 
Sbjct: 328 RRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDN-NCEPDAITYNELVA 386

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                G   E  A+ + M   G  PN    T++I  YGKA   D  +    ++ ELG  P
Sbjct: 387 AYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVP 446

Query: 480 D 480
           +
Sbjct: 447 N 447



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 101/434 (23%), Positives = 190/434 (43%), Gaps = 45/434 (10%)

Query: 89  KLKEKSYD---TRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNP 145
           K+KE   D     YN ++ +   +    +   ++   +R  G +F E  C  +++     
Sbjct: 262 KMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTVISACGRE 321

Query: 146 DTAALALTYFTN-KLKASKE-VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF 203
                A  +F + KL   K     YN  ++VF K     +A  +  +M D   +PD +T+
Sbjct: 322 GILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITY 381

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA---FG---- 256
           + L++        ++     + M S G  P+A+TY+++I+AYG+AG+ + A   FG    
Sbjct: 382 NELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKE 441

Query: 257 ----------------LYDRARNEKW-RI-----------DPNAFSTLIKLYGTAGNFDG 288
                           L  R+R+E   +I           D   ++T++ + G  G    
Sbjct: 442 LGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKF 501

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
              V  EMK  G +P+  T+N L+   GR      V  +Y EM   G +P   TY +LL 
Sbjct: 502 VSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLN 561

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A  R    +   SV  +M++KG + + T Y+ LL   +  G      ++  +M+  +   
Sbjct: 562 ALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKV--EMEIYDGHV 619

Query: 409 PDSWTF--SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             SW    + ++T   CR ++   E  F+++   G++ ++ V+ S++  + + Q+ +   
Sbjct: 620 FPSWMLLRTLVLTNYKCR-QLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAH 678

Query: 467 RALNRLPELGITPD 480
             L+ +   G+ P+
Sbjct: 679 EMLDVIHVSGLQPN 692



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 152/359 (42%), Gaps = 51/359 (14%)

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
           ++  +M + G +PD  TF+TLIS            + +  M + G  P   TY+++++A 
Sbjct: 504 QVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNAL 563

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV------------- 292
            R GN + A  +    R + ++ +  ++S L+  Y  AGN  G   V             
Sbjct: 564 ARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSW 623

Query: 293 ----------------------YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
                                 + +++  G K +M+  N++L    R ++  +   +   
Sbjct: 624 MLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDV 683

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           +  +GL PN  TY SL+  Y R         + ++++  G+   V  YNT++      G 
Sbjct: 684 IHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGL 743

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
             EA  I  +M ++   QP   TF++ ++  +  G  +EA+ +   M+E G  PN     
Sbjct: 744 VQEAIRILSEM-TANGVQPCPITFNTFMSCYAGNGLFAEADEVIRYMIEHGCMPNELTYK 802

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 509
            +I  Y KA++  + +  ++++ E+ I+ DD               + L KL  C+ +S
Sbjct: 803 IVIDGYIKAKKHKEAMDFVSKIKEIDISFDD---------------QSLKKLASCIRES 846



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 91/192 (47%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           KCR L   ER F  + + G K D V  ++++S    N    KA E  + +   G  P+ +
Sbjct: 635 KCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLV 694

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           TY+S+ID Y R G+   A  +    +N     D  +++T+IK +   G     + +  EM
Sbjct: 695 TYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEM 754

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
            A GV+P  IT+N  +          +   + + M ++G  PN  TY  ++  Y +A+  
Sbjct: 755 TANGVQPCPITFNTFMSCYAGNGLFAEADEVIRYMIEHGCMPNELTYKIVIDGYIKAKKH 814

Query: 357 EDTLSVYREMKE 368
           ++ +    ++KE
Sbjct: 815 KEAMDFVSKIKE 826



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 128/288 (44%), Gaps = 40/288 (13%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFE-R 225
           +N  +  + +C       +++ +M+  G  P   T++ L++  AR  N   KA E     
Sbjct: 521 FNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNALARRGNW--KAAESVVLD 578

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNV----EMAFGLYD---------------------- 259
           M   G  P+  +YS ++  Y +AGNV    ++   +YD                      
Sbjct: 579 MRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWMLLRTLVLTNYKCRQ 638

Query: 260 ---------RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
                    + +N  +++D    ++++ ++      +    + + +   G++PN++TYN+
Sbjct: 639 LKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNS 698

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L+D   R    W+ + + K++ ++G+SP+  +Y ++++ + +    ++ + +  EM   G
Sbjct: 699 LIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANG 758

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
           +Q     +NT ++  A  G   EA E+   M     C P+  T+  +I
Sbjct: 759 VQPCPITFNTFMSCYAGNGLFAEADEVIRYM-IEHGCMPNELTYKIVI 805



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 2/158 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEW 222
           ++++ N  + +F + + L+KA  + D +   G++P+ VT+++LI   AR+ +   KA E 
Sbjct: 657 DMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCW-KAEEM 715

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            + + + G  PD ++Y+++I  + + G V+ A  +         +  P  F+T +  Y  
Sbjct: 716 LKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAG 775

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
            G F     V   M   G  PN +TY  ++D   +AK+
Sbjct: 776 NGLFAEADEVIRYMIEHGCMPNELTYKIVIDGYIKAKK 813



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V+ YN  +K F K   + +A R+  +M   GV+P  +TF+T +SC   N L  +A E
Sbjct: 725 SPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAGNGLFAEADE 784

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRA 248
               M   GC P+ LTY  +ID Y +A
Sbjct: 785 VIRYMIEHGCMPNELTYKIVIDGYIKA 811


>gi|293333330|ref|NP_001168430.1| uncharacterized protein LOC100382200 [Zea mays]
 gi|223948245|gb|ACN28206.1| unknown [Zea mays]
          Length = 830

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 101/157 (64%), Gaps = 4/157 (2%)

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           NF+  LN+++EMKA GVKPN++  N +L  MG A +PW VK+I++EM D  +  +  TY 
Sbjct: 619 NFNRALNLFKEMKATGVKPNLVMCNTMLYVMGHALQPWVVKSIHREMIDKQVQHSKVTYC 678

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            LL AY RA Y ED ++VYR MK++ M   V LYN LL+   D+ Y DEA EIF DMK+S
Sbjct: 679 CLLHAYTRAHYDEDAMAVYRLMKDEAMD--VMLYNMLLSRYVDIDYVDEAEEIFGDMKAS 736

Query: 405 --ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
             +  +PD W++SSM+   S    +   E + NEM+E
Sbjct: 737 MDDRSKPDKWSYSSMLRQYSSTANILGVEGILNEMVE 773


>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
          Length = 1429

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 144/277 (51%), Gaps = 2/277 (0%)

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV--EMAFGLYDRARNEKWRIDPNAFS 274
           +KA E  + M   GC PD ++++++I+A  ++G +   +A  L D  RN   R D   ++
Sbjct: 242 SKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYN 301

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
           TL+       N DG + V+E+M+A   +P++ TYN ++   GR     + + ++ E+   
Sbjct: 302 TLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELK 361

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G  P+  TY SLL A+ R R  E    VY++M++ G       YNT++ M    G  D A
Sbjct: 362 GFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLA 421

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            ++++DMK      PD+ T++ +I       +  EA A+ +EML+ G +P L   ++LI 
Sbjct: 422 LQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALIC 481

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            Y KA + ++     + +   G  PD+     +L+V+
Sbjct: 482 GYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVL 518



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 118/555 (21%), Positives = 242/555 (43%), Gaps = 62/555 (11%)

Query: 168  YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
            +N  M  + +C   ++A  +F+ M+  G  P   + + L+    ++    +     E + 
Sbjct: 790  WNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQ 849

Query: 228  SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD-------------------------RAR 262
              G      +   M+DA+ RAGN+     +Y                          R R
Sbjct: 850  DMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVR 909

Query: 263  NEK----------WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            + +          ++++   +++++K+Y    ++   + VY+ +K  G++P+  TYN L+
Sbjct: 910  DAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLI 969

Query: 313  DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                R +RP +   + ++M + GL P  +TY SL+ A+G+ +  E    ++ E+  KG++
Sbjct: 970  IMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLK 1029

Query: 373  LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            L  + Y+T++ +  D G   +A ++ + MK++   +P   T   ++   S  G   EAE 
Sbjct: 1030 LDRSFYHTMMKISRDSGSDSKAEKLLQMMKNA-GIEPTLATMHLLMVSYSSSGNPQEAEK 1088

Query: 433  MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            + + + +   E      +S+I  Y +++  +  +  L  + + G+ PD R   C +   +
Sbjct: 1089 VLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAAS 1148

Query: 493  -QTPKEELGKLVECVEKSNSKLGYVVKLL-----LEEQDIEGDFKKEATELFNSISKDVK 546
                K E+  L++ +E     L   ++LL     L   +++G F+K       SI  +  
Sbjct: 1149 FSKEKIEVMLLLKALEDIGFDLP--IRLLAGRPELLVSEVDGWFEK-----LKSIEDNAA 1201

Query: 547  KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTA 605
              + N L++L     L   A  + +LG+   +++ D+   +   W    + LS GAAL A
Sbjct: 1202 LNFVNALLNLLWAFELRATASWVFQLGIKRGIFSLDVFRVADKDWGADFRRLSGGAALDA 1261

Query: 606  LHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKV 665
                      +LE   E P  + + TG    +Y+   L    ++ L E+ +PF     + 
Sbjct: 1262 ----------SLEGYPESPKSVVLITGTA--EYNGISLDKTLKACLWEMGSPFLPCKTRT 1309

Query: 666  GWFLTTEAAAKSWLE 680
            G  +    + + WL+
Sbjct: 1310 GLLVAKAHSLRMWLK 1324



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 123/247 (49%), Gaps = 3/247 (1%)

Query: 164  EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
            E+ ++N  +K++    D  K  +++  + + G++PD  T++TLI     +  P +     
Sbjct: 926  ELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLM 985

Query: 224  ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            ++M + G DP   TY S+I A+G+   +E A  L++   ++  ++D + + T++K+   +
Sbjct: 986  QQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDS 1045

Query: 284  GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            G+      + + MK  G++P + T + L+ +   +  P + + +   + D  +      Y
Sbjct: 1046 GSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPY 1105

Query: 344  ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +S++ AY R++     +    EMK++G++    ++   +   +   ++ E  E+   +K+
Sbjct: 1106 SSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAAS---FSKEKIEVMLLLKA 1162

Query: 404  SENCQPD 410
             E+   D
Sbjct: 1163 LEDIGFD 1169



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 137/303 (45%), Gaps = 4/303 (1%)

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           + TL+ C   N    +A + F  +   GC+       SM+  Y + G  E A  + ++A 
Sbjct: 684 YETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAE 743

Query: 263 NEKWRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
            + +    +  ++ +I+ YG    +    +V   ++  G  P++ T+N+L+    +    
Sbjct: 744 TKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCY 803

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
            + + I+  M  +G SP   +   LL A       E+   V  E+++ G ++S +    +
Sbjct: 804 ERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLM 863

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEA 440
           L   A  G   E  +I+  MK++    P    +  MI +  C+GK V +AE M +EM EA
Sbjct: 864 LDAFARAGNIFEVKKIYSSMKAA-GYLPTIRLYRMMIELL-CKGKRVRDAEIMVSEMEEA 921

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
            F+  L +  S+++ Y   +     V+   R+ E G+ PD+     L+ +  +  + E G
Sbjct: 922 NFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEG 981

Query: 501 KLV 503
            L+
Sbjct: 982 YLL 984



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/410 (20%), Positives = 145/410 (35%), Gaps = 77/410 (18%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD-RGVKPDNVTFSTLISCARMNNL 215
            K+   K+ + YN  + ++ K   LD A +L+ DM    G  PD +T++ LI      N 
Sbjct: 394 QKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANR 453

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
             +A      M   G  P   TYS++I  Y +AG  E A   +        + D  A+S 
Sbjct: 454 TVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSV 513

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR--------------- 320
           ++ +            +Y +M + G  P+   Y  ++  + +  R               
Sbjct: 514 MLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELC 573

Query: 321 ---PWQVKTIY-------------KEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLS 361
              P ++ ++              K    NG     +T  S+L +Y   GR     + L 
Sbjct: 574 GMNPLEISSVLVKGECFDLAARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLE 633

Query: 362 VYREMKEKGMQL----------------------------------SVTLYNTLLAMCAD 387
             +E      +L                                  S T+Y TLL  C  
Sbjct: 634 FLKEHASGSKRLITEALIVLHCKVNNLSAALDEYFADPCVHGWCFGSSTMYETLLHCCVA 693

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE---- 443
             +  EA ++F D++ S  C+       SM+ +    G    A  + N+    GF     
Sbjct: 694 NEHYAEASQVFSDLRLS-GCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACS 752

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           P   + T +I+ YGK +        +  L + G TPD +    L++   Q
Sbjct: 753 P---MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQ 799


>gi|414887493|tpg|DAA63507.1| TPA: hypothetical protein ZEAMMB73_333728 [Zea mays]
          Length = 674

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 101/157 (64%), Gaps = 4/157 (2%)

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           NF+  LN+++EMKA GVKPN++  N +L  MG A +PW VK+I++EM D  +  +  TY 
Sbjct: 463 NFNRALNLFKEMKATGVKPNLVMCNTMLYVMGHALQPWVVKSIHREMIDKQVQHSKVTYC 522

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            LL AY RA Y ED ++VYR MK++ M   V LYN LL+   D+ Y DEA EIF DMK+S
Sbjct: 523 CLLHAYTRAHYDEDAMAVYRLMKDEAMD--VMLYNMLLSRYVDIDYVDEAEEIFGDMKAS 580

Query: 405 --ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
             +  +PD W++SSM+   S    +   E + NEM+E
Sbjct: 581 MDDRSKPDKWSYSSMLRQYSSTANILGVEGILNEMVE 617


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 154/314 (49%), Gaps = 5/314 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + ++V  +   +D A  +   M D G  PD VT++ LI         +KA E + +M 
Sbjct: 265 YTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMR 324

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           +    PD +TY +++  +G  G++E     +     + +  D   ++ L++    +G  D
Sbjct: 325 ASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVD 384

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              ++ + M+  G+ PN+ TYN L+  +   +R  +   ++  M   G++P   +Y   +
Sbjct: 385 QAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFI 444

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YG+    E  L  + +MK++G+  S+   N  L   A++G   EA +IF D+    NC
Sbjct: 445 DYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDI---HNC 501

Query: 408 --QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              PDS T++ M+   S  G++ +A  +  EML  G EP++ V+ SLI    KA R D+ 
Sbjct: 502 GLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEA 561

Query: 466 VRALNRLPELGITP 479
            +   RL +L + P
Sbjct: 562 WQMFGRLKDLKLAP 575



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 151/313 (48%), Gaps = 36/313 (11%)

Query: 144  NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF 203
            N   AAL L            +  YN+ +    K + +D+   L+++ML RG KP+ +T 
Sbjct: 802  NITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITH 861

Query: 204  STLISCARMNNLPNKAVEW-----------------------------------FERMPS 228
            + +IS    +N  NKA++                                    FE MP 
Sbjct: 862  NIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPD 921

Query: 229  FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            + C P+   Y+ +I+ +G+AGNV +A  L+ R   E  R D  +++ L++     G  D 
Sbjct: 922  YQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDD 981

Query: 289  CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
             ++ +EE+K  G+ P+ ++YN +++ +G+++R  +  +++ EM + G+SP   TY +L+ 
Sbjct: 982  AVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALIL 1041

Query: 349  AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
             +G A   +    ++ E++  G++ +V  YN L+   +  G  D AF +F+ M     C 
Sbjct: 1042 HFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIV-GCS 1100

Query: 409  PDSWTFSSMITIC 421
            P++ TF+ +   C
Sbjct: 1101 PNAGTFAQLPNKC 1113



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 145/326 (44%), Gaps = 1/326 (0%)

Query: 155  FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
            FT  L        YN  M     C   + A +LF +M + G  P+  T++ L+     + 
Sbjct: 778  FTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSK 837

Query: 215  LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
              ++  E +  M   GC P+ +T++ +I A  ++ ++  A  LY    +  +   P  + 
Sbjct: 838  RIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYG 897

Query: 275  TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
             LI     AG  +  + ++EEM     KPN   YN L++  G+A        ++K M   
Sbjct: 898  PLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKE 957

Query: 335  GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
            G+ P+  +Y  L+         +D +  + E+K  G+      YN ++         +EA
Sbjct: 958  GIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEA 1017

Query: 395  FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
              +F +MK +    P+ +T++++I      G V +A  MF E+   G EPN+F   +LI+
Sbjct: 1018 LSLFSEMK-NRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIR 1076

Query: 455  CYGKAQRTDDVVRALNRLPELGITPD 480
             + K+   D       ++  +G +P+
Sbjct: 1077 GHSKSGNKDRAFSVFKKMMIVGCSPN 1102



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 147/333 (44%), Gaps = 36/333 (10%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A +++  M+  G+KP   T+S L+            ++  E M + G  P+  TY+  I
Sbjct: 210 EALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICI 269

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
              GRAG ++ A+G+     +E    D   ++ LI     AG  D    +Y +M+A   K
Sbjct: 270 RVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHK 329

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P+++TY  L+   G       VK  + EM  +G +P+  TY  L+ A  ++   +    +
Sbjct: 330 PDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDM 389

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI---- 418
              M+ +G+  ++  YNTL++   ++   DEA E+F +M+S     P ++++   I    
Sbjct: 390 LDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESL-GVAPTAYSYVLFIDYYG 448

Query: 419 ----------------------TICSCR---------GKVSEAEAMFNEMLEAGFEPNLF 447
                                 +I +C          G++ EA+ +FN++   G  P+  
Sbjct: 449 KLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSV 508

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               +++CY KA + D   + L  +   G  PD
Sbjct: 509 TYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPD 541



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 188/418 (44%), Gaps = 26/418 (6%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +      R LD+A  LF++M   GV P   ++   I        P KA++ FE+M 
Sbjct: 405 YNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMK 464

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P     ++ + +    G +  A  +++   N     D   ++ ++K Y  AG  D
Sbjct: 465 KRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQID 524

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
               +  EM + G +P++I  N+L+DT+   GR    WQ   ++  + D  L+P   TY 
Sbjct: 525 KATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQ---MFGRLKDLKLAPTVVTYN 581

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L+   G+       L ++  MKE G   +   +N LL         D A ++F  M + 
Sbjct: 582 ILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRM-TI 640

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            NC PD  T++++I      G+   A   +++M +    P+   L +L+    K  R +D
Sbjct: 641 MNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQM-KKFLSPDHVTLYTLLPGVVKDGRVED 699

Query: 465 VVR-ALNRLPELGITPDDRFCGCLLN-VMTQTPKEEL-----GKLVECVEKSNSKLGYVV 517
            ++  +  + + G+   ++  G L+  ++ +   EE      G +   + + ++ +  ++
Sbjct: 700 AIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPLI 759

Query: 518 KLLLEEQDIEGDFKKEATELFNSISKDV-----KKAYCNCLIDLCVNLNLLENACKLL 570
           ++L +++        +A +LF+  +K +      ++Y NCL+D  +  N+ E A KL 
Sbjct: 760 RVLCKQKK-----ALDAKKLFDKFTKSLGTHPTPESY-NCLMDGLLGCNITEAALKLF 811



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 121/245 (49%), Gaps = 3/245 (1%)

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           TY ++  A    G +  A     + R   + ++  +++ LI      G     L VY+ M
Sbjct: 159 TYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRM 218

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
            + G+KP+M TY+ L+  +GR +    +  + +EM   GL PN  TY   +R  GRA   
Sbjct: 219 ISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRI 278

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
           +D   + + M+++G    V  Y  L+ A+CA  G  D+A E++  M++S + +PD  T+ 
Sbjct: 279 DDAYGILKTMEDEGCGPDVVTYTVLIDALCA-AGKLDKAKELYTKMRASSH-KPDLVTYI 336

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           ++++     G +   +  ++EM   G+ P++   T L++   K+ + D     L+ +   
Sbjct: 337 TLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVR 396

Query: 476 GITPD 480
           GI P+
Sbjct: 397 GIVPN 401



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 128/287 (44%), Gaps = 6/287 (2%)

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +A++ ++RM S G  P   TYS+++ A GR  +      L +       R +   ++  I
Sbjct: 210 EALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICI 269

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           ++ G AG  D    + + M+  G  P+++TY  L+D +  A +  + K +Y +M  +   
Sbjct: 270 RVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHK 329

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P+  TY +L+  +G     E     + EM+  G    V  Y  L+      G  D+AF++
Sbjct: 330 PDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDM 389

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            + M+      P+  T++++I+      ++ EA  +FN M   G  P  +     I  YG
Sbjct: 390 LDVMRV-RGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYG 448

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVE 504
           K    +  +    ++ + GI P    C   L  +      E+G++ E
Sbjct: 449 KLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLA-----EMGRIRE 490



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 150/343 (43%), Gaps = 4/343 (1%)

Query: 158  KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
            K  +   V LY +   V +  R  D  + + + +   G++  N  +  L+ C  +     
Sbjct: 675  KFLSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIE 734

Query: 218  KAVEWFERMPSFG-CDPDALTYSSMIDAYGRAGNVEMAFGLYDR-ARNEKWRIDPNAFST 275
            +A+ + E +     C  D L    +I    +      A  L+D+  ++      P +++ 
Sbjct: 735  EAISFAEGLVCNSICQDDNLILP-LIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNC 793

Query: 276  LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
            L+         +  L ++ EMK  G  PN+ TYN LLD  G++KR  ++  +Y EM   G
Sbjct: 794  LMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRG 853

Query: 336  LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
              PN  T+  ++ A  ++      L +Y E+       +   Y  L+      G ++EA 
Sbjct: 854  CKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAM 913

Query: 396  EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            +IFE+M   + C+P+   ++ +I      G V+ A  +F  M++ G  P+L   T L++C
Sbjct: 914  KIFEEMPDYQ-CKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVEC 972

Query: 456  YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
                 R DD V     L   G+ PD      ++N + ++ + E
Sbjct: 973  LFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLE 1015



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 155/346 (44%), Gaps = 11/346 (3%)

Query: 139 LNNMTNPDTAALALTYFTNKLKASKEVILY-----NVTMKVFRKCRDLDKAERLFDDMLD 193
           L ++++P++A   L+YF  K+ +    I++     N  ++  R    ++    +FD M  
Sbjct: 96  LKSISDPNSA---LSYF--KMVSQLPNIVHTPETCNYMLEFLRVHGRVEDMAFVFDLMQK 150

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           + +  +  T+ T+     +     +A     +M   G   +A +Y+ +I    + G  + 
Sbjct: 151 QVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKE 210

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  +Y R  +E  +     +S L+   G   +    +++ EEM+ +G++PN+ TY   + 
Sbjct: 211 ALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIR 270

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
            +GRA R      I K M D G  P+  TY  L+ A   A   +    +Y +M+    + 
Sbjct: 271 VLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKP 330

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
            +  Y TL++   + G  +     + +M+ ++   PD  T++ ++      GKV +A  M
Sbjct: 331 DLVTYITLMSKFGNYGDLETVKRFWSEME-ADGYAPDVVTYTILVEALCKSGKVDQAFDM 389

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
            + M   G  PNL    +LI      +R D+ +   N +  LG+ P
Sbjct: 390 LDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAP 435



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 164/407 (40%), Gaps = 59/407 (14%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + + YN+ MK + K   +DKA +L  +ML  G +PD +  ++LI         ++A +
Sbjct: 504 SPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQ 563

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F R+      P  +TY+ +I   G+ G +  A  L+   +      +   F+ L+    
Sbjct: 564 MFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLC 623

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                D  L ++  M  +   P+++TYN ++  + +  R       Y +M    LSP+  
Sbjct: 624 KNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQM-KKFLSPDHV 682

Query: 342 TYASLLRAYGRARYGEDTLSVYRE-MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
           T  +LL    +    ED + +  E + + G+Q S  ++  L+         +EA    E 
Sbjct: 683 TLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAEG 742

Query: 401 MKSSENCQPDSWTFSSMITICSCRG----------------------------------K 426
           +  +  CQ D+     +  +C  +                                    
Sbjct: 743 LVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCN 802

Query: 427 VSEAE-AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC- 484
           ++EA   +F EM  AG  PN+F    L+  +GK++R D++    N +           C 
Sbjct: 803 ITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEM----------LCR 852

Query: 485 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLL-LEEQDIEGDF 530
           GC  N++T         ++  + KSNS    + K L L  + I GDF
Sbjct: 853 GCKPNIITHNI------IISALVKSNS----INKALDLYYEIISGDF 889



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 43/370 (11%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           LK +  V+ YN+ +    K   L KA  LF  M + G  P+ VTF+ L+ C   N+  + 
Sbjct: 571 LKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDL 630

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A++ F RM    C PD LTY+++I    + G    AF  Y +    K  + P+  +    
Sbjct: 631 ALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQM---KKFLSPDHVTLYTL 687

Query: 279 LYGTA----------------------------GNFDGCLNVYEEMK-----AIGVKPNM 305
           L G                              G    C+ +  E++     A G+  N 
Sbjct: 688 LPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNS 747

Query: 306 ITYNN-----LLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDT 359
           I  ++     L+  + + K+    K ++ + T + G  P   +Y  L+         E  
Sbjct: 748 ICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAA 807

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           L ++ EMK  G   ++  YN LL         DE FE++ +M     C+P+  T + +I+
Sbjct: 808 LKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEM-LCRGCKPNIITHNIIIS 866

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                  +++A  ++ E++   F P       LI    KA R+++ ++    +P+    P
Sbjct: 867 ALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKP 926

Query: 480 DDRFCGCLLN 489
           +      L+N
Sbjct: 927 NCAIYNILIN 936



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 7/350 (2%)

Query: 151 ALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF-STLI 207
           AL  F N   L  +     Y + +  + K  D +KA   F+ M  RG+ P      ++L 
Sbjct: 421 ALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLY 480

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           S A M  +  +A + F  + + G  PD++TY+ M+  Y +AG ++ A  L     +E   
Sbjct: 481 SLAEMGRI-REAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCE 539

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D    ++LI     AG  D    ++  +K + + P ++TYN L+  +G+  +  +   +
Sbjct: 540 PDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDL 599

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           +  M ++G  PN  T+ +LL    +    +  L ++  M        V  YNT++     
Sbjct: 600 FGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIK 659

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML-EAGFEPNL 446
            G    AF  +  MK  +   PD  T  +++      G+V +A  +  E + ++G + + 
Sbjct: 660 EGRAGYAFWFYHQMK--KFLSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSN 717

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
            V   L++C       ++ +     L    I  DD     L+ V+ +  K
Sbjct: 718 QVWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVLCKQKK 767


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 175/353 (49%), Gaps = 8/353 (2%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA-RMN 213
            +N+ +   + + Y+  +  F K    D A  L ++M D G++P    ++ L++   +++
Sbjct: 216 MSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLD 275

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           N+ + A+  FE M    C PD  TY+ +I   G+AG ++ A+  +   R E  R D    
Sbjct: 276 NV-HGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLM 334

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMT 332
           + +I   G AG  D  + ++EEM+ +   P+++TYN ++  +  +K R  ++ + ++ M 
Sbjct: 335 NNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMK 394

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
            +G+SP+  TY+ L+  + +    E  + +  EM EKG       Y +L+         D
Sbjct: 395 GSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYD 454

Query: 393 EAFEIFEDMKSSENCQPDSW-TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
            A E+F+++K  ENC   S   ++ MI      G++ +A  +F+EM   G  PN++   +
Sbjct: 455 LANELFQELK--ENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNA 512

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT--PKEELGKL 502
           L+    +A   D+ +  + R+ + G  PD      +LN + +T  P   +G L
Sbjct: 513 LMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGML 565



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 143/303 (47%), Gaps = 10/303 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-----SCARMNNLPNK 218
           + +L N  +    K   LD A +LF++M      P  VT++T+I     S +R++ + + 
Sbjct: 330 DTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISS- 388

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
              WFERM   G  P   TYS +ID + +    E A  L +    + +   P A+ +LI 
Sbjct: 389 ---WFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLID 445

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
             G A  +D    +++E+K      +   Y  ++  +G+A R      ++ EM   G +P
Sbjct: 446 ALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTP 505

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N   Y +L+    RA   ++ L+  R M++ G    +  YN +L   A  G  D A  + 
Sbjct: 506 NVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGML 565

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
            +MK S   +PD+ ++++++   S  G   EA  +  EM   GF+ +L   +S+++  GK
Sbjct: 566 CNMKQSA-IKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAIGK 624

Query: 459 AQR 461
             +
Sbjct: 625 VDQ 627



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 134/300 (44%), Gaps = 11/300 (3%)

Query: 137 IILNNMTN------PDTAALALTYFTNKLKASKEVILYNVTMK-VFRKCRDLDKAERLFD 189
           +++NNM N          A+ L      L+    V+ YN  +K +F     + +    F+
Sbjct: 332 VLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFE 391

Query: 190 DMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
            M   G+ P   T+S LI      N   KA+   E M   G  P    Y S+IDA G+A 
Sbjct: 392 RMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAK 451

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
             ++A  L+   +          ++ +IK  G AG  D  +++++EM  +G  PN+  YN
Sbjct: 452 RYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYN 511

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            L+  + RA    +  T  + M D+G  P+ N+Y  +L A  +    +  + +   MK+ 
Sbjct: 512 ALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQS 571

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
            ++     YNT+L   +  G  +EA ++ ++M +      D  T+SS   I    GKV +
Sbjct: 572 AIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAI-GFDYDLITYSS---ILEAIGKVDQ 627



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 147/319 (46%), Gaps = 29/319 (9%)

Query: 172 MKVFRKCRDLDKAERLF----DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +K+F+   D +KA  +     D  L R V   +V  S  +   R          W  R  
Sbjct: 64  LKIFKWGPDAEKALEVLMMKVDHWLVREVMKTDVGVSVKMQFFR----------WAARKR 113

Query: 228 SFGCDPDALTYSSMI------DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
           ++  + D  TY ++I      + YG     EM   + +  RN    + P   S +I++ G
Sbjct: 114 NY--EHDTSTYMALIRCLEVVEQYG-----EMWKMIQEMVRNPVCVVTPMELSDIIRMLG 166

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PNW 340
            A      + ++ ++KA   +P    YN+++  +       +V  +Y EM++ G   P+ 
Sbjct: 167 NAKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDT 226

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY++L+ A+ +    +  + +  EMK+ GMQ +  +Y  L+A+   +     A  +FE+
Sbjct: 227 VTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEE 286

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M+  + C+PD +T++ +I      G++ EA   F+EM   G  P+  ++ ++I   GKA 
Sbjct: 287 MR-HQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAG 345

Query: 461 RTDDVVRALNRLPELGITP 479
           R DD ++    +  L   P
Sbjct: 346 RLDDAIKLFEEMETLRCIP 364



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 51/223 (22%)

Query: 98  RYNSLVKLAADL-DSCSATEDDVFSVL-RCLGDDFLEQDCVIILNNMTNPDTAALALTYF 155
           RY+   +L  +L ++C ++   V++V+ + LG      D V + + M             
Sbjct: 452 RYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEM------------- 498

Query: 156 TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
            N+L  +  V  YN  M    +   LD+A      M D G  PD  +++ +++       
Sbjct: 499 -NRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGG 557

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
           P++A+     M      PDA++Y++++ A   AG  E A  L                  
Sbjct: 558 PDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKL------------------ 599

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
                             +EM AIG   ++ITY+++L+ +G+ 
Sbjct: 600 -----------------MKEMNAIGFDYDLITYSSILEAIGKV 625


>gi|224029839|gb|ACN33995.1| unknown [Zea mays]
          Length = 411

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 101/157 (64%), Gaps = 4/157 (2%)

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           NF+  LN+++EMKA GVKPN++  N +L  MG A +PW VK+I++EM D  +  +  TY 
Sbjct: 200 NFNRALNLFKEMKATGVKPNLVMCNTMLYVMGHALQPWVVKSIHREMIDKQVQHSKVTYC 259

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            LL AY RA Y ED ++VYR MK++ M   V LYN LL+   D+ Y DEA EIF DMK+S
Sbjct: 260 CLLHAYTRAHYDEDAMAVYRLMKDEAMD--VMLYNMLLSRYVDIDYVDEAEEIFGDMKAS 317

Query: 405 --ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
             +  +PD W++SSM+   S    +   E + NEM+E
Sbjct: 318 MDDRSKPDKWSYSSMLRQYSSTANILGVEGILNEMVE 354


>gi|225446845|ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Vitis vinifera]
          Length = 844

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/479 (24%), Positives = 221/479 (46%), Gaps = 54/479 (11%)

Query: 178 CRDLDKAERL------FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
            RDL KAE+L      F  + D G K D  T+++LI+      LP KA E +E M + GC
Sbjct: 256 VRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAGC 315

Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
             D  TY  MI +  ++G ++ AF L+   + +  R     F++L+   G AG  D  + 
Sbjct: 316 LLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMK 375

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           VY EM+  G++P+   Y +L+++  +A +      I+ EM   G  PN+  Y  ++ ++ 
Sbjct: 376 VYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHA 435

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           ++   E  +SV+ +M++ G   + + Y+ LL M +  G  D A +++  M ++   +P  
Sbjct: 436 KSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSM-TNAGLRPGL 494

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            T+++++T+ + +  V  A  +  EM   GF  ++   + ++  Y K    D  +R L  
Sbjct: 495 STYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSA-SDVLMVYIKDGSVDLALRWLRF 553

Query: 472 LPELGITPDD-----RFCGCLLNVMTQTPK-------------------EELGKLVECVE 507
           +   GI  ++      F  C+ N + ++ K                     L  LV C E
Sbjct: 554 MGSSGIRTNNFIIRQLFESCMKNGLYESAKPLLETYVNSAAKVDLILYTSILAHLVRCQE 613

Query: 508 KSNSKLGYVVKLLLEEQDIEGDF----------KKEAT-----ELFNSISKDVKKA---- 548
           + N +  +++ +L   +     F          +K+       E F S+  ++++     
Sbjct: 614 EQNER--HLMLILSATKHKAHTFMCGLFTGPEQRKQPVLSFVREFFQSVDYELEEGAARY 671

Query: 549 YCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTAL 606
           + N L++  V +  +  A  + ++    +++   I       WSL +++LS+GAAL A+
Sbjct: 672 FVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALVAV 730



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 153/320 (47%), Gaps = 11/320 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDML-DRGVKPDNVTFSTLISCARMNNLPNKAVEW---- 222
           Y +      + RD D  + LFD+M+ D G   DN   S++I+C ++     KA +     
Sbjct: 213 YALLFDRLNQSRDFDAIQSLFDEMIRDSG---DNNGVSSVIACNQVVRDLAKAEKLEVAF 269

Query: 223 --FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
             F+++   GC  D  TY+S+I  +   G    AF +Y+        +D + +  +I   
Sbjct: 270 CCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSL 329

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
             +G  D    +++EMK   ++P+ + + +L+D+MG+A R      +Y EM   GL P+ 
Sbjct: 330 AKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSA 389

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
             Y SL+ ++ +A   E  L ++ EMK+ G + +  LY  ++   A  G  + A  +F D
Sbjct: 390 TMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSD 449

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M+ +    P   T+S ++ + S  G+V  A  ++N M  AG  P L   T+L+      +
Sbjct: 450 MEKA-GFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANKK 508

Query: 461 RTDDVVRALNRLPELGITPD 480
             D   + L  +  +G + D
Sbjct: 509 LVDVAAKVLLEMKAMGFSVD 528



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 157/359 (43%), Gaps = 25/359 (6%)

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKW--RIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           S +I A     + + +  L+  A+ + W   ++   ++ L      + +FD   ++++EM
Sbjct: 177 SHVIQALKIVTDTDASLSLFRWAKRQPWYSMLNDECYALLFDRLNQSRDFDAIQSLFDEM 236

Query: 297 -----KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
                   GV  ++I  N ++  + +A++       +K++ D+G   +  TY SL+  + 
Sbjct: 237 IRDSGDNNGVS-SVIACNQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFL 295

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
                     VY  M+  G  L  + Y  ++   A  G  D AF++F++MK  +N +P  
Sbjct: 296 NKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMK-EKNLRPSF 354

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
             F+S++      G++  +  ++ EM   G  P+  +  SLI+ + KA + +  +R  + 
Sbjct: 355 LVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDE 414

Query: 472 LPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYV-----VKLLLEEQDI 526
           + + G  P+      ++    ++ K E       V     K G++        LLE    
Sbjct: 415 MKKAGFRPNYGLYTMVVESHAKSGKLETAM---SVFSDMEKAGFLPTPSTYSCLLEMHSA 471

Query: 527 EGDFKKEATELFNSISKDVKK---AYCNCLIDLCVNLNLLENACKLL----ELGLTLEV 578
            G     A +L+NS++    +   +    L+ L  N  L++ A K+L     +G +++V
Sbjct: 472 SGQV-DSAMKLYNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDV 529



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y   ++ F K   L+ A R++D+M   G +P+   ++ ++     +     A+  F  M
Sbjct: 391 MYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSDM 450

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G  P   TYS +++ +  +G V+ A  LY+   N   R   + ++ L+ L       
Sbjct: 451 EKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANKKLV 510

Query: 287 DGCLNVYEEMKAIG 300
           D    V  EMKA+G
Sbjct: 511 DVAAKVLLEMKAMG 524



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 65/148 (43%), Gaps = 1/148 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           LY + ++   K   L+ A  +F DM   G  P   T+S L+     +   + A++ +  M
Sbjct: 426 LYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSM 485

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            + G  P   TY++++        V++A  +    +   + +D +A S ++ +Y   G+ 
Sbjct: 486 TNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSA-SDVLMVYIKDGSV 544

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDT 314
           D  L     M + G++ N      L ++
Sbjct: 545 DLALRWLRFMGSSGIRTNNFIIRQLFES 572


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 167/326 (51%), Gaps = 8/326 (2%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           +  N  + V+ K R  D+A  +  +M   G  P  VT+++LIS    + L  +A +  E 
Sbjct: 283 VTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEE 342

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G +PD +TY++++    RAG ++ A G Y+       + +   ++ LIKL+G  G 
Sbjct: 343 MEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGK 402

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F   + V++E+++ G  P+++T+N LL   G+     +V  ++KEM  +G  P  +TY S
Sbjct: 403 FPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVS 462

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ +Y R    +  + +Y+ M E G+   ++ YN +L+  A  G  ++A ++F +M++ +
Sbjct: 463 LISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLD 522

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           + +PD  ++SS++   +   K+ + +++  ++     E +  ++ +L+    K     D 
Sbjct: 523 S-RPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDT 581

Query: 466 VRALNRLPELGITPDDRFCGCLLNVM 491
            +A   L         R C   +NV+
Sbjct: 582 EKAFLELRR-------RRCSLDINVL 600



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 148/297 (49%), Gaps = 3/297 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +   R+     +A ++FD+M   G +PD VT ++L+         ++A+   + M 
Sbjct: 250 YNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEME 309

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P  +TY+S+I +Y + G +E A  L +    +    D   ++TL+     AG  D
Sbjct: 310 QGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKID 369

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMG-RAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
             +  Y EM   G KPN+ TYN L+   G R K P ++  ++ E+   G  P+  T+ +L
Sbjct: 370 AAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFP-EMMIVFDEIRSAGFVPDVVTWNTL 428

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L  +G+     +   V++EMK+ G       Y +L++  +  G  D+A EI++ M  +  
Sbjct: 429 LAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEA-G 487

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
             PD  T++++++  +  G+  +AE +F EM      P+    +SL+  Y  A++ D
Sbjct: 488 IHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLD 544



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 139/284 (48%), Gaps = 2/284 (0%)

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR-AGNVEMAFG 256
           PD   ++ LIS     +    AV  F RM + G  P  +TY+ ++  Y + A   +    
Sbjct: 174 PDASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLA 233

Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           L D  R +   +D   ++TLI        +     V++EM+A G +P+ +T N+LLD  G
Sbjct: 234 LVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYG 293

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +A+R  +   + KEM   G  P+  TY SL+ +Y +    E+   +  EM+ KG++  V 
Sbjct: 294 KARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVI 353

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            Y TL++     G  D A   + +M  +  C+P+  T++++I +   RGK  E   +F+E
Sbjct: 354 TYTTLVSGLDRAGKIDAAIGTYNEMLRN-GCKPNLCTYNALIKLHGVRGKFPEMMIVFDE 412

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  AGF P++    +L+  +G+     +V      + + G  P+
Sbjct: 413 IRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPE 456



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 159/350 (45%), Gaps = 38/350 (10%)

Query: 165 VILYNVTMKVFRKCR-DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++ YNV + V+ K      +   L D M   G+  D  T++TLISC R   L  +A + F
Sbjct: 211 LVTYNVVLHVYSKIAVPWKEVLALVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVF 270

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M + G +PD +T +S++D                                   +YG A
Sbjct: 271 DEMRAAGFEPDKVTLNSLLD-----------------------------------VYGKA 295

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
             +D  + V +EM+  G  P+++TYN+L+ +  +     +   + +EM   G+ P+  TY
Sbjct: 296 RRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITY 355

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+    RA   +  +  Y EM   G + ++  YN L+ +    G   E   +F++++S
Sbjct: 356 TTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRS 415

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +    PD  T+++++ +    G  +E   +F EM ++G+ P      SLI  Y +    D
Sbjct: 416 A-GFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFD 474

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 512
             +    R+ E GI PD      +L+ + +  + E+  KL   +E  +S+
Sbjct: 475 QAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSR 524



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 155/352 (44%), Gaps = 36/352 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI Y   +    +   +D A   +++ML  G KP+  T++ LI    +     + +  F
Sbjct: 351 DVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVF 410

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + + S G  PD +T+++++  +G+ G      G++   +   +  + + + +LI  Y   
Sbjct: 411 DEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRC 470

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G FD  + +Y+ M   G+ P++ TYN +L  + R  R  Q + ++ EM +    P+  +Y
Sbjct: 471 GLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSY 530

Query: 344 ASLLRAYGRAR------------YGE-----------------------DTLSVYREMKE 368
           +SLL AY  A+            Y E                       DT   + E++ 
Sbjct: 531 SSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRR 590

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
           +   L + + N ++++    G   +  EI   MK S +    + T++S++ + S  G   
Sbjct: 591 RRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKES-SINLSTATYNSLMHMYSRLGDCE 649

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           + E +  E+  +   P+ +   ++I  YG+  +  +  R  + +   G+ PD
Sbjct: 650 KCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPD 701



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 156/330 (47%), Gaps = 9/330 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +N  + VF +     +   +F +M   G  P+  T+ +LIS      L ++A+E +
Sbjct: 421 DVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIY 480

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           +RM   G  PD  TY++++ A  R G  E A  L+    N   R D  ++S+L+  Y  A
Sbjct: 481 KRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANA 540

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM----GRAKRPWQVKTIYKEMTDNGLSPN 339
              D   ++ E++ A  ++    ++N L+ T+     +       +  + E+     S +
Sbjct: 541 KKLDKMKSLSEDIYAERIE----SHNGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLD 596

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
            N   +++  YG+    +    +   MKE  + LS   YN+L+ M + +G  ++   I  
Sbjct: 597 INVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILT 656

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           ++KSS   +PD +++++MI     +G++ EA  +F+EM  +G  P++      ++ Y   
Sbjct: 657 EIKSSR-ARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVAN 715

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLN 489
              ++ +  +  +   G  P++R    +L 
Sbjct: 716 SMFEEAIDLVRYMVTHGCKPNERTYNTILQ 745



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 124/284 (43%), Gaps = 40/284 (14%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW------ 322
           D +A++ LI     A  F   + V+  M A GV P ++TYN +L    +   PW      
Sbjct: 175 DASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLAL 234

Query: 323 ------------------------------QVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
                                         +   ++ EM   G  P+  T  SLL  YG+
Sbjct: 235 VDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGK 294

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
           AR  ++ + V +EM++ G   SV  YN+L++     G  +EA ++ E+M+  +  +PD  
Sbjct: 295 ARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEME-VKGIEPDVI 353

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T++++++     GK+  A   +NEML  G +PNL    +LI+ +G   +  +++   + +
Sbjct: 354 TYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEI 413

Query: 473 PELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYV 516
              G  PD      LL V  Q     L   V  V K   K GYV
Sbjct: 414 RSAGFVPDVVTWNTLLAVFGQN---GLDTEVSGVFKEMKKSGYV 454



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/300 (20%), Positives = 125/300 (41%), Gaps = 36/300 (12%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           + +C   D+A  ++  M++ G+ PD  T++ ++S         +A + F  M +    PD
Sbjct: 467 YSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPD 526

Query: 235 ALTYSSMIDAYGRAG---------------NVEMAFGL--------------------YD 259
            L+YSS++ AY  A                 +E   GL                    + 
Sbjct: 527 ELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFL 586

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
             R  +  +D N  + +I +YG  G       +   MK   +  +  TYN+L+    R  
Sbjct: 587 ELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLG 646

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
              + + I  E+  +   P+  +Y +++ AYGR    ++   ++ EMK  G+   +  YN
Sbjct: 647 DCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYN 706

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
             +         +EA ++   M  +  C+P+  T+++++      G++++ ++  + + E
Sbjct: 707 IFVKSYVANSMFEEAIDLVRYM-VTHGCKPNERTYNTILQEYCSHGRIADGKSFISNLPE 765


>gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 582

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 182/383 (47%), Gaps = 13/383 (3%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           + K  + + AER+   +   G  P+ ++++ L+         N A   F RM S G +P 
Sbjct: 149 YGKLGNFNGAERVLSVLSKMGSSPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPS 208

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEK---WRIDPNAFSTLIKLYGTAGNFDGCLN 291
           A+TY  ++  +      + A  +++   +EK    + D   +  +I +Y  AGN+D    
Sbjct: 209 AVTYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYDKARK 268

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           V+  M   GV  + +TYN+L+      K   +V  IY +M  +G+ P+  +YA L++AYG
Sbjct: 269 VFSSMVGKGVPQSTVTYNSLMSFETNYK---EVSKIYDQMQRSGIQPDVVSYALLIKAYG 325

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           RAR  E+ LSV+ EM + G++ +   YN LL   A  G  ++A  +F+ M+  +   PD 
Sbjct: 326 RARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRR-DRIFPDL 384

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
           W++++M++       +  AE  F  +   GFEPN+    ++I+ Y KA   + ++    +
Sbjct: 385 WSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTMIKGYAKANDVEKMMEVYEK 444

Query: 472 LPELGITPDDRFCGCLLNVMTQTPK--EELG---KLVECVEKSNSKLGYVVKLLLEEQDI 526
           +   GI  +      +++   +       LG   ++  C    + K   V+  L   QD 
Sbjct: 445 MRLSGIKANQTILTTIMDASGRCKDFGSALGWYKEMESCGVPPDQKAKNVLLSLYSTQD- 503

Query: 527 EGDFKKEATELFNSISKDVKKAY 549
           E D  KE T L N  +  V + Y
Sbjct: 504 ELDEAKELTGLRNETATIVARVY 526



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 135/303 (44%), Gaps = 9/303 (2%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRG---VKPDNVTFSTLISCARMNNLPNKAVEW 222
           + Y + +K F +     +AE +F+ +LD     +KPD   +  +I   +     +KA + 
Sbjct: 210 VTYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYDKARKV 269

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F  M   G     +TY+S++       N +    +YD+ +    + D  +++ LIK YG 
Sbjct: 270 FSSMVGKGVPQSTVTYNSLMSF---ETNYKEVSKIYDQMQRSGIQPDVVSYALLIKAYGR 326

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           A   +  L+V+EEM   GV+P    YN LLD    +    Q KT++K M  + + P+  +
Sbjct: 327 ARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWS 386

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y ++L AY  A   E     ++ +K  G + ++  Y T++   A     ++  E++E M+
Sbjct: 387 YTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTMIKGYAKANDVEKMMEVYEKMR 446

Query: 403 SSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
            S      + T  + I   S R K    A   + EM   G  P+      L+  Y     
Sbjct: 447 LS--GIKANQTILTTIMDASGRCKDFGSALGWYKEMESCGVPPDQKAKNVLLSLYSTQDE 504

Query: 462 TDD 464
            D+
Sbjct: 505 LDE 507



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 116/241 (48%), Gaps = 7/241 (2%)

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           W      F  LI  YG  GNF+G   V   +  +G  PN+I+Y  L+++ GR  +    +
Sbjct: 135 WNFSEMDFLMLITAYGKLGNFNGAERVLSVLSKMGSSPNVISYTALMESYGRGGKCNNAE 194

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
            I++ M  +G  P+  TY  +L+ +    + +  E+      + K+  ++    +Y+ ++
Sbjct: 195 AIFRRMQSSGPEPSAVTYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMI 254

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            M    G  D+A ++F  M   +     + T++S+++  +   +VS+   ++++M  +G 
Sbjct: 255 YMYKKAGNYDKARKVFSSM-VGKGVPQSTVTYNSLMSFETNYKEVSK---IYDQMQRSGI 310

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 502
           +P++     LI+ YG+A+R ++ +     + + G+ P  +    LL+    +   E  K 
Sbjct: 311 QPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKT 370

Query: 503 V 503
           V
Sbjct: 371 V 371



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 113/232 (48%), Gaps = 3/232 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  M      +++ K   ++D M   G++PD V+++ LI          +A+  FE 
Sbjct: 283 VTYNSLMSFETNYKEVSK---IYDQMQRSGIQPDVVSYALLIKAYGRARREEEALSVFEE 339

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P    Y+ ++DA+  +G VE A  ++   R ++   D  +++T++  Y  A +
Sbjct: 340 MLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASD 399

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +G    ++ +K  G +PN++TY  ++    +A    ++  +Y++M  +G+  N     +
Sbjct: 400 MEGAEKFFKRIKVDGFEPNIVTYGTMIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTT 459

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           ++ A GR +     L  Y+EM+  G+       N LL++ +     DEA E+
Sbjct: 460 IMDASGRCKDFGSALGWYKEMESCGVPPDQKAKNVLLSLYSTQDELDEAKEL 511


>gi|302143554|emb|CBI22115.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/479 (24%), Positives = 221/479 (46%), Gaps = 54/479 (11%)

Query: 178 CRDLDKAERL------FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
            RDL KAE+L      F  + D G K D  T+++LI+      LP KA E +E M + GC
Sbjct: 169 VRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAGC 228

Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
             D  TY  MI +  ++G ++ AF L+   + +  R     F++L+   G AG  D  + 
Sbjct: 229 LLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMK 288

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           VY EM+  G++P+   Y +L+++  +A +      I+ EM   G  PN+  Y  ++ ++ 
Sbjct: 289 VYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHA 348

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           ++   E  +SV+ +M++ G   + + Y+ LL M +  G  D A +++  M ++   +P  
Sbjct: 349 KSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSM-TNAGLRPGL 407

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            T+++++T+ + +  V  A  +  EM   GF  ++   + ++  Y K    D  +R L  
Sbjct: 408 STYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSA-SDVLMVYIKDGSVDLALRWLRF 466

Query: 472 LPELGITPDD-----RFCGCLLNVMTQTPK-------------------EELGKLVECVE 507
           +   GI  ++      F  C+ N + ++ K                     L  LV C E
Sbjct: 467 MGSSGIRTNNFIIRQLFESCMKNGLYESAKPLLETYVNSAAKVDLILYTSILAHLVRCQE 526

Query: 508 KSNSKLGYVVKLLLEEQDIEGDF----------KKEAT-----ELFNSISKDVKKA---- 548
           + N +  +++ +L   +     F          +K+       E F S+  ++++     
Sbjct: 527 EQNER--HLMLILSATKHKAHTFMCGLFTGPEQRKQPVLSFVREFFQSVDYELEEGAARY 584

Query: 549 YCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTAL 606
           + N L++  V +  +  A  + ++    +++   I       WSL +++LS+GAAL A+
Sbjct: 585 FVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALVAV 643



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 127/287 (44%), Gaps = 17/287 (5%)

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           ++I  N ++  + +A++       +K++ D+G   +  TY SL+  +           VY
Sbjct: 161 SVIACNQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVY 220

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
             M+  G  L  + Y  ++   A  G  D AF++F++MK  +N +P    F+S++     
Sbjct: 221 ESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMK-EKNLRPSFLVFASLVDSMGK 279

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
            G++  +  ++ EM   G  P+  +  SLI+ + KA + +  +R  + + + G  P+   
Sbjct: 280 AGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGL 339

Query: 484 CGCLLNVMTQTPKEELGKLVECVEKSNSKLGYV-----VKLLLEEQDIEGDFKKEATELF 538
              ++    ++ K E       V     K G++        LLE     G     A +L+
Sbjct: 340 YTMVVESHAKSGKLETAM---SVFSDMEKAGFLPTPSTYSCLLEMHSASGQV-DSAMKLY 395

Query: 539 NSISKDVKK---AYCNCLIDLCVNLNLLENACKLL----ELGLTLEV 578
           NS++    +   +    L+ L  N  L++ A K+L     +G +++V
Sbjct: 396 NSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDV 442



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y   ++ F K   L+ A R++D+M   G +P+   ++ ++     +     A+  F  M
Sbjct: 304 MYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSDM 363

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G  P   TYS +++ +  +G V+ A  LY+   N   R   + ++ L+ L       
Sbjct: 364 EKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANKKLV 423

Query: 287 DGCLNVYEEMKAIG 300
           D    V  EMKA+G
Sbjct: 424 DVAAKVLLEMKAMG 437



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 65/148 (43%), Gaps = 1/148 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           LY + ++   K   L+ A  +F DM   G  P   T+S L+     +   + A++ +  M
Sbjct: 339 LYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSM 398

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            + G  P   TY++++        V++A  +    +   + +D +A S ++ +Y   G+ 
Sbjct: 399 TNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSA-SDVLMVYIKDGSV 457

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDT 314
           D  L     M + G++ N      L ++
Sbjct: 458 DLALRWLRFMGSSGIRTNNFIIRQLFES 485


>gi|15242530|ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39980, chloroplastic; Flags: Precursor
 gi|10176990|dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007115|gb|AED94498.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 678

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 167/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + V+ K +   +A  L  +M + GV P+ V++STL+S    N+   +A+  F
Sbjct: 259 DLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVF 318

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+   V+ A  L+   R  K  I+PN  +++T++++YG
Sbjct: 319 AEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLR--KMDIEPNVVSYNTILRVYG 376

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN ++   G+     +   + +EM   G+ PN  
Sbjct: 377 EAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAI 436

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+A   +   +++++++  G+++   LY T++     VG    A  +  ++
Sbjct: 437 TYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHEL 496

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K      PD+    + ITI +  G+  EA  +F +  E+G   ++ V   +I  Y + QR
Sbjct: 497 K-----LPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQR 551

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +V+    ++   G  PD      +LN
Sbjct: 552 YVNVIEVFEKMRTAGYFPDSNVIAMVLN 579



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 112/507 (22%), Positives = 216/507 (42%), Gaps = 82/507 (16%)

Query: 107 ADLDSCSAT------EDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALT-YFTNKL 159
            D+D   A+      E ++FS+L    D  L    ++ L +  N    +LAL  +   + 
Sbjct: 90  VDMDELLASIHQTQNEKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEA 149

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K +  V  YNV ++   + +  D A  LFD+M  R + PD  T+STLI+      + + A
Sbjct: 150 KYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSA 209

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           + W ++M       D + YS++I+   R  +   A  ++ R +      D  A++++I +
Sbjct: 210 LSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINV 269

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG---- 335
           YG A  F     + +EM   GV PN ++Y+ LL       +  +  +++ EM +      
Sbjct: 270 YGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALD 329

Query: 336 -------------------------------LSPNWNTYASLLRAYGRARYGEDTLSVYR 364
                                          + PN  +Y ++LR YG A    + + ++R
Sbjct: 330 LTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFR 389

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
            M+ K ++ +V  YNT++ +       ++A  + ++M+ S   +P++ T+S++I+I    
Sbjct: 390 LMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQ-SRGIEPNAITYSTIISIWGKA 448

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---------------------------- 456
           GK+  A  +F ++  +G E +  +  ++I  Y                            
Sbjct: 449 GKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAI 508

Query: 457 ---GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL 513
               KA RT++      +  E G   D    GC++N+ ++  +     ++E  EK  +  
Sbjct: 509 TILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQR--YVNVIEVFEKMRTA- 565

Query: 514 GY-----VVKLLLEEQDIEGDFKKEAT 535
           GY     V+ ++L     + +F+K  T
Sbjct: 566 GYFPDSNVIAMVLNAYGKQREFEKADT 592



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 31/218 (14%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  +K++ K  + +KA  L  +M  RG++P+ +T+ST+IS
Sbjct: 384 AIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIIS 443

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR--------------------- 247
                   ++A   F+++ S G + D + Y +MI AY R                     
Sbjct: 444 IWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIP 503

Query: 248 ----------AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
                     AG  E A  ++ +A       D + F  +I LY     +   + V+E+M+
Sbjct: 504 RETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMR 563

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
             G  P+      +L+  G+ +   +  T+Y+EM + G
Sbjct: 564 TAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEG 601



 Score = 42.7 bits (99), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 13/205 (6%)

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           SV  YN +L         D A  +F++M+      PD +T+S++IT     G    A + 
Sbjct: 154 SVFAYNVVLRNVLRAKQFDIAHGLFDEMRQ-RALAPDRYTYSTLITSFGKEGMFDSALSW 212

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
             +M +     +L + ++LI+   +       +   +RL   GITPD      ++NV   
Sbjct: 213 LQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVY-- 270

Query: 494 TPKEELGKLVECVEKSNSKLGYVVKLL----LEEQDIEGDFKKEATELFNSISKDVKKAY 549
             K +L +    + K  ++ G +   +    L    +E     EA  +F  + K+V  A 
Sbjct: 271 -GKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEM-KEVNCAL 328

Query: 550 ----CNCLIDLCVNLNLLENACKLL 570
               CN +ID+   L++++ A +L 
Sbjct: 329 DLTTCNIMIDVYGQLDMVKEADRLF 353


>gi|357123530|ref|XP_003563463.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 862

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 129/526 (24%), Positives = 225/526 (42%), Gaps = 52/526 (9%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           D+AE L   ML+ GV PD  ++  ++   AR  +L ++  E F  M   G  PD   Y  
Sbjct: 262 DQAEMLLRAMLEAGVLPDTASYRHIVDAFARAGDL-SRVAELFREMADTGHTPDPSAYLG 320

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +++A+ R G    A  +  + + +        +  L+ LYG  G FDG   ++ EM+   
Sbjct: 321 LMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELFREMRT-A 379

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           V P+  TYN L    G      +V  ++ +M   G+ P+  T   +L A G+    ED  
Sbjct: 380 VPPDTATYNVLFSVFGDGGFFKEVVELFHDMLRTGIEPDMETCEGVLVACGQGGLHEDAR 439

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            V   + ++GM  +   Y  L+         +EA+  F +M +     P   T++S+  +
Sbjct: 440 EVLDYITKEGMVPTAKAYTGLVEALGHAAMYEEAYVAF-NMMTEIGSLPTIETYNSLANV 498

Query: 421 CSCRGKVSEAEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
            +  G   EAE++F+ M   AG + N     +LI+ Y +  + DD V+A   + +    P
Sbjct: 499 FAKGGLFQEAESIFSRMTNSAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNP 558

Query: 480 DDRFCGCLLNV-----MTQTPKEELGKLVECVEKSNSKLGYVVKL--------------L 520
           D+R    +LN      +    KE+  + ++      S + Y + L              L
Sbjct: 559 DERSLEGVLNAYCIAGVIDESKEQFEE-IQSNMAVPSIIAYCMMLSLYARNDRWADAYDL 617

Query: 521 LEEQD--------------IEGDFKKE--------ATELFNSISKDVKKAYCNCLIDLCV 558
           LEE                I+G++           A +  N    D    + N L+D+  
Sbjct: 618 LEEMKTNRASSTHQVIASMIQGEYDDSSNWQMVEYALDSSNLEGCDYSLRFFNALLDVLW 677

Query: 559 NLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALE 618
                  A ++L+  +   ++ ++   +   WSL +  +S+G AL A+ +W+N L   L+
Sbjct: 678 WFGQKARAARVLDHAVNSGLFPELSRDTKLVWSLDVHRMSVGGALVAVSVWLNKLYARLK 737

Query: 619 SGEEFPPLLGINTGHGKHKYS--DKGL--ASVFESHLKE-LNAPFH 659
             ++ P L  +    GK + S   +GL  A V  S L + L++ FH
Sbjct: 738 GEKDLPQLASVVVLRGKMEKSTITRGLPIAKVVYSFLNDTLSSSFH 783



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 143/327 (43%), Gaps = 6/327 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y V + ++ +    D    LF +M    V PD  T++ L S         + VE F  M 
Sbjct: 353 YRVLLDLYGRQGRFDGVRELFREM-RTAVPPDTATYNVLFSVFGDGGFFKEVVELFHDML 411

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G +PD  T   ++ A G+ G  E A  + D    E       A++ L++  G A  ++
Sbjct: 412 RTGIEPDMETCEGVLVACGQGGLHEDAREVLDYITKEGMVPTAKAYTGLVEALGHAAMYE 471

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASL 346
                +  M  IG  P + TYN+L +   +     + ++I+  MT++ G+  N +++ +L
Sbjct: 472 EAYVAFNMMTEIGSLPTIETYNSLANVFAKGGLFQEAESIFSRMTNSAGIQKNKDSFDAL 531

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           + AY +    +D +  Y EM++        +L   L A C   G  DE+ E FE+++S+ 
Sbjct: 532 IEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI-AGVIDESKEQFEEIQSNM 590

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC-YGKAQRTDD 464
              P    +  M+++ +   + ++A  +  EM          V+ S+IQ  Y  +     
Sbjct: 591 AV-PSIIAYCMMLSLYARNDRWADAYDLLEEMKTNRASSTHQVIASMIQGEYDDSSNWQM 649

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVM 491
           V  AL+     G     RF   LL+V+
Sbjct: 650 VEYALDSSNLEGCDYSLRFFNALLDVL 676



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/353 (21%), Positives = 152/353 (43%), Gaps = 28/353 (7%)

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKW-RIDPNAFSTLIKLYGTAGN--FDGCLNVYE 294
           ++++   + R G+ + +  L+   + + W R D +  + +I + G  G    D CL V+ 
Sbjct: 100 FAAVYREFSRRGDWQRSVRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFH 159

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           ++ A       ++Y +L+    R     + + +  +M   G++P   TY ++L A  RA 
Sbjct: 160 DLPAD--SRTALSYTSLIAAYARNALHEEARALLDQMKAAGVAPTAATYNTVLAACARAT 217

Query: 355 YG----EDTLSVYREMKEK---GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
                 +  L ++ EM+      ++  +T YNTLLA  A     D+A  +   M  +   
Sbjct: 218 DPPVPFDMLLGLFAEMRHDVSPAVRPDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEA-GV 276

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD+ ++  ++   +  G +S    +F EM + G  P+      L++ + +   T + V 
Sbjct: 277 LPDTASYRHIVDAFARAGDLSRVAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVA 336

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK----EELGKLVECVEKSNSKLGYVVKLLLEE 523
            L ++   G  P       LL++  +  +     EL + +      ++    V+  +   
Sbjct: 337 VLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELFREMRTAVPPDTATYNVLFSVFG- 395

Query: 524 QDIEGDFKKEATELFN-----SISKDVKKAYCNCLIDLCVNLNLLENACKLLE 571
              +G F KE  ELF+      I  D++   C  ++  C    L E+A ++L+
Sbjct: 396 ---DGGFFKEVVELFHDMLRTGIEPDMET--CEGVLVACGQGGLHEDAREVLD 443


>gi|357462685|ref|XP_003601624.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490672|gb|AES71875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 175/354 (49%), Gaps = 14/354 (3%)

Query: 151 ALTYFTNKLKASKEV----ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           A++ F N LK S  +    I  N+ + V+ K +   +A  L  +M D GV P   ++STL
Sbjct: 249 AISIF-NALKGSGNIVPDLIACNMMISVYGKAKLFREARLLLQEMRDNGVNPSTASYSTL 307

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
           ++    N    +AV  F  M    C  D  T + MID YG+   ++ A   +   R  K 
Sbjct: 308 LAIYVDNQKFVEAVSLFSEMNEVECPIDLTTCNIMIDVYGQLQMIKEADCFFWGMR--KM 365

Query: 267 RIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
            I+PN  +++T++++YG AG F   ++++  M+  GV  N++TYN ++   G++    + 
Sbjct: 366 GIEPNVVSYNTVLRVYGEAGLFGEAVHLFSLMQMKGVPQNVVTYNTMISIYGKSLEHDKA 425

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
             + +EM   G+ PN  TY++++  + +A   +    ++ +++  G+++   LY T++  
Sbjct: 426 TNLIQEMQSRGIQPNAITYSTIISIWEKAGKLDRAAMLFHKLRTSGVKIDEILYQTMIVA 485

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
               G    A  +  ++K     QPD+ +  + ITI +  GKV EA  +F +  +AG   
Sbjct: 486 YQKAGLVAHAKRLLNELK-----QPDNVSRETAITILARAGKVDEAMWVFRQAFDAGEVK 540

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
           ++ V   +I  + + ++   VV    ++ E+G  PD      +LN   +  K E
Sbjct: 541 DISVFGCIIDIFSRERKYAHVVEVFEKMREVGHFPDSNVIALVLNAFGKLRKFE 594



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 183/375 (48%), Gaps = 43/375 (11%)

Query: 145 PD-TAALALTYFTNKL-KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVT 202
           PD   +LA+  + N++ + S  + +YNV ++   + +    A  LFD+ML +G+ PD  T
Sbjct: 138 PDWQRSLAILDWMNEIAQYSPSLNVYNVVIRNVLRAKQWQLAHGLFDEMLQKGLSPDKYT 197

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA------YGRA-------- 248
           +STLI+      L + +  W ++M       D + YS++I+       Y +A        
Sbjct: 198 YSTLITHFSKQGLFDSSFFWLQQMERDNVSGDLVLYSNLIELSRKLCDYSKAISIFNALK 257

Query: 249 --GNV-------EMAFGLYDRAR--------NEKWR---IDPN--AFSTLIKLYGTAGNF 286
             GN+        M   +Y +A+         ++ R   ++P+  ++STL+ +Y     F
Sbjct: 258 GSGNIVPDLIACNMMISVYGKAKLFREARLLLQEMRDNGVNPSTASYSTLLAIYVDNQKF 317

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              ++++ EM  +    ++ T N ++D  G+ +   +    +  M   G+ PN  +Y ++
Sbjct: 318 VEAVSLFSEMNEVECPIDLTTCNIMIDVYGQLQMIKEADCFFWGMRKMGIEPNVVSYNTV 377

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           LR YG A    + + ++  M+ KG+  +V  YNT++++       D+A  + ++M+ S  
Sbjct: 378 LRVYGEAGLFGEAVHLFSLMQMKGVPQNVVTYNTMISIYGKSLEHDKATNLIQEMQ-SRG 436

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            QP++ T+S++I+I    GK+  A  +F+++  +G + +  +  ++I  Y KA       
Sbjct: 437 IQPNAITYSTIISIWEKAGKLDRAAMLFHKLRTSGVKIDEILYQTMIVAYQKAGLVAHAK 496

Query: 467 RALNRLPELGITPDD 481
           R LN L +    PD+
Sbjct: 497 RLLNELKQ----PDN 507



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 145/321 (45%), Gaps = 26/321 (8%)

Query: 140 NNMTNPDTAALA--LTYFTNKLKASKEVILY---------------NVTMKVFRKCRDLD 182
           +N  NP TA+ +  L  + +  K  + V L+               N+ + V+ + + + 
Sbjct: 294 DNGVNPSTASYSTLLAIYVDNQKFVEAVSLFSEMNEVECPIDLTTCNIMIDVYGQLQMIK 353

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A+  F  M   G++P+ V+++T++       L  +AV  F  M   G   + +TY++MI
Sbjct: 354 EADCFFWGMRKMGIEPNVVSYNTVLRVYGEAGLFGEAVHLFSLMQMKGVPQNVVTYNTMI 413

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
             YG++   + A  L    ++    I PNA  +ST+I ++  AG  D    ++ +++  G
Sbjct: 414 SIYGKSLEHDKATNLIQEMQSRG--IQPNAITYSTIISIWEKAGKLDRAAMLFHKLRTSG 471

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           VK + I Y  ++    +A      K +  E+      P+  +  + +    RA   ++ +
Sbjct: 472 VKIDEILYQTMIVAYQKAGLVAHAKRLLNELK----QPDNVSRETAITILARAGKVDEAM 527

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            V+R+  + G    ++++  ++ + +         E+FE M+   +  PDS   + ++  
Sbjct: 528 WVFRQAFDAGEVKDISVFGCIIDIFSRERKYAHVVEVFEKMREVGHF-PDSNVIALVLNA 586

Query: 421 CSCRGKVSEAEAMFNEMLEAG 441
                K   A+A++ +M E G
Sbjct: 587 FGKLRKFERADALYKQMYEEG 607



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 96/220 (43%), Gaps = 31/220 (14%)

Query: 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
           + V+ YN  + ++ K  + DKA  L  +M  RG++P+ +T+ST+IS        ++A   
Sbjct: 404 QNVVTYNTMISIYGKSLEHDKATNLIQEMQSRGIQPNAITYSTIISIWEKAGKLDRAAML 463

Query: 223 FERMPSFGCDPDALTYSSMIDAY-------------------------------GRAGNV 251
           F ++ + G   D + Y +MI AY                                RAG V
Sbjct: 464 FHKLRTSGVKIDEILYQTMIVAYQKAGLVAHAKRLLNELKQPDNVSRETAITILARAGKV 523

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           + A  ++ +A +     D + F  +I ++     +   + V+E+M+ +G  P+      +
Sbjct: 524 DEAMWVFRQAFDAGEVKDISVFGCIIDIFSRERKYAHVVEVFEKMREVGHFPDSNVIALV 583

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           L+  G+ ++  +   +YK+M + G       +  +L  YG
Sbjct: 584 LNAFGKLRKFERADALYKQMYEEGCVFPDEVHFQMLGLYG 623



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 99/213 (46%), Gaps = 5/213 (2%)

Query: 303 PNMITYNNLLDTMGRAKRPWQV-KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           P++  YN ++  + RAK+ WQ+   ++ EM   GLSP+  TY++L+  + +    + +  
Sbjct: 158 PSLNVYNVVIRNVLRAKQ-WQLAHGLFDEMLQKGLSPDKYTYSTLITHFSKQGLFDSSFF 216

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
             ++M+   +   + LY+ L+ +   +    +A  IF  +K S N  PD    + MI++ 
Sbjct: 217 WLQQMERDNVSGDLVLYSNLIELSRKLCDYSKAISIFNALKGSGNIVPDLIACNMMISVY 276

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
                  EA  +  EM + G  P+    ++L+  Y   Q+  + V   + + E+    D 
Sbjct: 277 GKAKLFREARLLLQEMRDNGVNPSTASYSTLLAIYVDNQKFVEAVSLFSEMNEVECPIDL 336

Query: 482 RFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG 514
             C  +++V  Q    ++ K  +C      K+G
Sbjct: 337 TTCNIMIDVYGQL---QMIKEADCFFWGMRKMG 366



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 3/135 (2%)

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
            + +  +   +D+A  +F    D G   D   F  +I            VE FE+M   G
Sbjct: 513 AITILARAGKVDEAMWVFRQAFDAGEVKDISVFGCIIDIFSRERKYAHVVEVFEKMREVG 572

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
             PD+   + +++A+G+    E A  LY +   E           ++ LYG   +F+   
Sbjct: 573 HFPDSNVIALVLNAFGKLRKFERADALYKQMYEEGCVFPDEVHFQMLGLYGARMDFNMVE 632

Query: 291 NVYEEMKAIGVKPNM 305
           +++E++ +    PN+
Sbjct: 633 SLFEKLDS---HPNI 644


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 173/345 (50%), Gaps = 3/345 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI Y+  +  F      D+++ LFD+M+D+GV+PD VTFS LI          +A +  
Sbjct: 271 DVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLL 330

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  P+ +TY+S+ID +   G++  A  L+    ++    D  +++TLI  Y   
Sbjct: 331 EVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKT 390

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                 +N+Y EM  +G  PN+ TY  LL  + +  +    K ++  M   G+S N   Y
Sbjct: 391 WKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIY 450

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
              L    +     + + ++ E+K    +L++  Y+ L+      G  + A+E+FE + S
Sbjct: 451 GIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKL-S 509

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            E  QPD  T++ MI      G+V  A  +F +M E G  P++    +L+  + +  + +
Sbjct: 510 QEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLE 569

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 508
           +V++ L+++ +  ++P+   C  +++++ +   E+  K V+ + K
Sbjct: 570 EVIKLLHKMVQKDVSPNAASCTIVVDMLCK--DEKYKKFVDLLPK 612



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 188/401 (46%), Gaps = 23/401 (5%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           L+++M   G+ PD  T S L +C    N  ++A+     +   G  P+ +TY+++I    
Sbjct: 113 LYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLC 172

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEM------KA 298
               +  A  L+   R +K    PNA  + TLIK     GN +  L +++EM        
Sbjct: 173 MEHRISEATRLF--LRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYG 230

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
           +  KP +ITY+ ++D + +  R  + K +++EM   G+ P+  +Y++L+  +  A   + 
Sbjct: 231 VNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQ 290

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
           +  ++ EM ++G+Q  +  ++ L+      G   EA ++ E M       P+  T++S+I
Sbjct: 291 SKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVM-IQRGIVPNLITYNSLI 349

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 G ++ A  +F  M   G EP+    T+LI  Y K  +  + +   N + ++G +
Sbjct: 350 DGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKS 409

Query: 479 PDDRFCGCLLNVMTQTPKEELGKLVECVEKS-----NSKLGYVVKLLLEEQDIEGDFKKE 533
           P+    G LL  + Q  K    K +  V K+     NS++ Y + L   +   + D   E
Sbjct: 410 PNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQI-YGIFL---DGLCKNDCLFE 465

Query: 534 ATELFNSI-SKDVKKAYCN--CLIDLCVNLNLLENACKLLE 571
           A ELFN + S + K    N  CLID       LE A +L E
Sbjct: 466 AMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFE 506



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 184/422 (43%), Gaps = 55/422 (13%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+ N + N +  + AL      L+      V+ Y   +K       + +A RLF  M   
Sbjct: 131 ILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKL 190

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERM----PSFG--CDPDALTYSSMIDAYGRA 248
           G  P+ VT+ TLI         N A++  + M      +G  C P  +TYS +ID   + 
Sbjct: 191 GCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKV 250

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           G  + A  L++  + +    D  ++STLI  +  AG +D   ++++EM   GV+P+M+T+
Sbjct: 251 GREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTF 310

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           + L+DT+ +  +  + K + + M   G+ PN  TY SL+  +                  
Sbjct: 311 SVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGF------------------ 352

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
                              VG  + A E+F  M  S+  +PD  +++++I       KV 
Sbjct: 353 -----------------CMVGDLNSARELFLSM-PSKGLEPDEISYTTLINGYCKTWKVK 394

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           EA  ++NEML+ G  PN+    +L++   +  +  D  +    +   G++ + +  G  L
Sbjct: 395 EAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFL 454

Query: 489 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQD--IEGDFK----KEATELFNSIS 542
           + + +        L E +E  N    Y  KL +E     I+G  K    + A ELF  +S
Sbjct: 455 DGLCKN-----DCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLS 509

Query: 543 KD 544
           ++
Sbjct: 510 QE 511



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 118/289 (40%), Gaps = 52/289 (17%)

Query: 247 RAGNVE--MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-- 302
           + GN+    AF  +D           ++F+ L+       ++    ++Y EM+  G+   
Sbjct: 66  KTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPD 125

Query: 303 ---------------------------------PNMITYNNLLDTMGRAKRPWQVKTIYK 329
                                            PN++TY  L+  +    R  +   ++ 
Sbjct: 126 LFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFL 185

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL------YNTLLA 383
            M   G +PN  TY +L++   +       L +++EM     Q  V        Y+ ++ 
Sbjct: 186 RMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIID 245

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
               VG  DEA E+FE+MK ++   PD  ++S++I    C GK  +++ +F+EM++ G +
Sbjct: 246 GLCKVGREDEAKELFEEMK-AQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQ 304

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 484
           P++   + LI    K  +  +  + L  + + GI P+        D FC
Sbjct: 305 PDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFC 353



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 2/191 (1%)

Query: 151 ALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+  +   L+  K   V  Y   +K   +   +  A++LF  M   GV  ++  +   + 
Sbjct: 396 AMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLD 455

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               N+   +A+E F  + S+    +   YS +ID   +AG +E A+ L+++   E  + 
Sbjct: 456 GLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQP 515

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   ++ +I  +   G  D    ++E+M+  G  P++I YN LL       +  +V  + 
Sbjct: 516 DVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLL 575

Query: 329 KEMTDNGLSPN 339
            +M    +SPN
Sbjct: 576 HKMVQKDVSPN 586



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAM 433
           ++ +N LL   A + +  + F ++ +M+ +    PD +T S ++  C C   +VSEA A 
Sbjct: 91  ISSFNRLLGGLAKINHYSQLFSLYNEMRLA-GLSPDLFTLS-ILANCLCNVNRVSEALAA 148

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
              +L  G+ PN+   T+LI+      R  +  R   R+ +LG TP+    G L+  + Q
Sbjct: 149 MAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQ 208

Query: 494 T 494
           T
Sbjct: 209 T 209


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 174/363 (47%), Gaps = 3/363 (0%)

Query: 139 LNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKP 198
           L+ +  PD   L L +   +L     V L+   ++VF +   +D A  L D+M    +  
Sbjct: 205 LSEVREPD-PMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDA 263

Query: 199 DNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
           D V ++  I C       + + ++F  M S G  PD +TY+SMI    +A  ++ A  L+
Sbjct: 264 DIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELF 323

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
           ++    +      A++T+I  YG+AG FD    + E  KA G  P++I YN +L  +G+ 
Sbjct: 324 EQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKK 383

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
           +R  +   I++EM  + + PN  TY  L+    R       L +  +M+  G+  +V   
Sbjct: 384 RRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTV 442

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           N ++         +EA  IFE M   + C P++ TFSS+I      G+V +A +++ +ML
Sbjct: 443 NIMIDRLCKAQKLEEACSIFEGM-DDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKML 501

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
           + G  P   V TSLI+ + K  R +D  +    +   G +PD       ++ + +  + E
Sbjct: 502 DCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETE 561

Query: 499 LGK 501
            G+
Sbjct: 562 KGR 564



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 165/339 (48%), Gaps = 4/339 (1%)

Query: 156 TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
           +N L A  +++LYNV +  F K   +D + + F +M   G+ PD+VT++++I      N 
Sbjct: 258 SNSLDA--DIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANR 315

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
            ++AVE FE++      P A  Y++MI  YG AG  + A+GL +R + +       A++ 
Sbjct: 316 LDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNC 375

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           ++   G     +  L ++EEMK   V PN+ TYN L+D + R  +      I  +M   G
Sbjct: 376 ILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIRDDMERAG 434

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           L PN  T   ++    +A+  E+  S++  M +K    +   +++L+      G  D+A+
Sbjct: 435 LFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAY 494

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            ++E M    +  P +  ++S+I      G+  +   ++ EM+  G  P+L ++ + + C
Sbjct: 495 SLYEKMLDCGHV-PGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDC 553

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
             KA  T+        +   G  PD R    L++ + + 
Sbjct: 554 VFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKA 592



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 148/316 (46%), Gaps = 3/316 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y   ++ F KC   +   +++ +M+  G  PD    +T + C        K    F  
Sbjct: 510 IVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFRE 569

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           + + G  PDA +YS +I    +AG     + L+   + +   +D +A++ +I  +  +G 
Sbjct: 570 INAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGK 629

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    + EEMK  G  P ++TY +++D + +  R  +   +++E   NG+  N   Y+S
Sbjct: 630 VNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSS 689

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  +G+    ++   +  E+ +KG+  +V  +N LL         +EA   F+ MK  +
Sbjct: 690 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLK 749

Query: 406 NCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            C P+  T+S +I  +C  R K ++A   + EM + G +PN    T++I    KA    +
Sbjct: 750 -CPPNQITYSILINGLCRVR-KFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILE 807

Query: 465 VVRALNRLPELGITPD 480
                +R    G  PD
Sbjct: 808 ASGLFSRFKANGGIPD 823



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 167/378 (44%), Gaps = 39/378 (10%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI YN  +    K R +++A R+F++M  R   P+  T++ LI         N A+E  +
Sbjct: 370 VIAYNCILTCLGKKRRVEEALRIFEEM-KRDAVPNVPTYNILIDMLCREGKLNAALEIRD 428

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  P+ LT + MID   +A  +E A  +++   ++    +   FS+LI   G  G
Sbjct: 429 DMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCG 488

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN--- 341
             D   ++YE+M   G  P  I Y +L+ +  +  R      IYKEM   G SP+     
Sbjct: 489 RVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLIN 548

Query: 342 --------------------------------TYASLLRAYGRARYGEDTLSVYREMKEK 369
                                           +Y+ L+    +A    +T  ++  MKE+
Sbjct: 549 TYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQ 608

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G  L    YN ++      G  ++A+++ E+MK   +  P   T+ S+I   +   ++ E
Sbjct: 609 GCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGH-PPTVVTYGSVIDGLAKIDRLDE 667

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           A  +F E    G + N+ V +SLI  +GK  R D+    +  L + G+TP+     CLL+
Sbjct: 668 AYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLD 727

Query: 490 VMTQTPKEELGKLVECVE 507
            + +   EE+ + + C +
Sbjct: 728 ALVKA--EEINEALICFQ 743



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 170/396 (42%), Gaps = 43/396 (10%)

Query: 123 LRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVIL---YNVTMKVFRKCR 179
           L  LG+  L +  + +L  + + +TA   + YF    K +++V     YN  + V  +  
Sbjct: 83  LSALGEKPLPELVIGVLKRLKDANTA---VNYFQWAEKQTEKVHCPEAYNSLLMVMARNT 139

Query: 180 DLDKAERLFDDMLDRGVKPD-NVTFSTLISCARMNNL----------------------- 215
           + D  ER+ ++M   G  P  N++   + +C +   L                       
Sbjct: 140 EFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYT 199

Query: 216 -----------PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
                      P+  +  F +M   G + +   ++++I  + R G V+ A  L D  ++ 
Sbjct: 200 ILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSN 259

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
               D   ++  I  +G AG  D     + EMK+ G+ P+ +TY +++  + +A R  + 
Sbjct: 260 SLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEA 319

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
             +++++  N   P    Y +++  YG A   ++   +    K KG   SV  YN +L  
Sbjct: 320 VELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTC 379

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
                  +EA  IFE+MK   +  P+  T++ +I +    GK++ A  + ++M  AG  P
Sbjct: 380 LGKKRRVEEALRIFEEMK--RDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFP 437

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           N+  +  +I    KAQ+ ++       + +   TP+
Sbjct: 438 NVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPN 473



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 157/351 (44%), Gaps = 1/351 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S ++ L N  M    K  + +K   LF ++   G  PD  ++S LI       L N+  E
Sbjct: 541 SPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYE 600

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F  M   GC  D   Y+++ID + ++G V  A+ L +  + +        + ++I    
Sbjct: 601 LFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLA 660

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                D    ++EE K+ G+K N++ Y++L+D  G+  R  +   I +E+   GL+PN  
Sbjct: 661 KIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVY 720

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+  LL A  +A    + L  ++ MK+     +   Y+ L+     V   ++AF  +++M
Sbjct: 721 TWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEM 780

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           +     +P++ T+++MI+  +  G + EA  +F+     G  P+     ++I+    A +
Sbjct: 781 QKL-GLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANK 839

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSK 512
             D           G     + C  LL+ + +    E   +V  V K  +K
Sbjct: 840 AMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQAAIVGAVLKETAK 890



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 107/250 (42%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y   +    K   LD+A  LF++    G+K + V +S+LI         ++A    E
Sbjct: 649 VVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIME 708

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G  P+  T++ ++DA  +A  +  A   +   ++ K   +   +S LI       
Sbjct: 709 ELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVR 768

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            F+     ++EM+ +G+KPN ITY  ++  + +A    +   ++     NG  P+  +Y 
Sbjct: 769 KFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYN 828

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +++     A    D  +++ E + KG  +       LL         ++A  +   +K +
Sbjct: 829 AMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQAAIVGAVLKET 888

Query: 405 ENCQPDSWTF 414
              Q  S +F
Sbjct: 889 AKSQHASRSF 898



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPN 217
           LK     I Y++ +    + R  +KA   + +M   G+KP+ +T++T+IS  A+  N+  
Sbjct: 748 LKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNIL- 806

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           +A   F R  + G  PD+ +Y++MI+    A     A+ L++  R
Sbjct: 807 EASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETR 851


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 178/355 (50%), Gaps = 3/355 (0%)

Query: 153 TYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARM 212
           T+   K  A+  +  YNV + +  K  +++ A ++ D M + G+ P+ +T + +I     
Sbjct: 395 TFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCK 454

Query: 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
               ++A   FE M    C PD +T+ S+ID  G+ G V+ A+ LY++  +     +   
Sbjct: 455 AKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVV 514

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           +++LIK +   G  +    +++EM   G  P++   N  +D + +A    + + +++E+ 
Sbjct: 515 YTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIK 574

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             G  P+  +Y+ L+    +A +  +T  ++  MKE+G  L    YNT +      G  +
Sbjct: 575 SRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVN 634

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           +A+++ E+MK+    QP   T+ S+I   +   ++ EA  +F E    G E N+ + +SL
Sbjct: 635 KAYQLLEEMKTKGR-QPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSL 693

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
           I  +GK  R D+    +  L + G+TP+     CLL+ + +   EE+ + + C +
Sbjct: 694 IDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKA--EEINEALVCFQ 746



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 150/316 (47%), Gaps = 3/316 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++Y   +K F KC   +   ++F +M+ RG  PD    +  + C        K    FE 
Sbjct: 513 VVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEE 572

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           + S G  PD ++YS +I    +AG     + L+   + +   +D +A++T I  +  +G 
Sbjct: 573 IKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGK 632

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    + EEMK  G +P ++TY +++D + +  R  +   +++E   NGL  N   Y+S
Sbjct: 633 VNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSS 692

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  +G+    ++   +  E+ +KG+  +V  +N LL         +EA   F++MK+ +
Sbjct: 693 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLK 752

Query: 406 NCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              P+  T+S +I  +C  R K ++A   + EM + G +PN    T++I    KA    +
Sbjct: 753 G-TPNHITYSILINGLCRVR-KFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAE 810

Query: 465 VVRALNRLPELGITPD 480
                 R    G  PD
Sbjct: 811 ASSLFERFKANGGVPD 826



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 174/366 (47%), Gaps = 17/366 (4%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S ++ L N  M    K  +  K   LF+++  RG  PD +++S LI          +  E
Sbjct: 544 SPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYE 603

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F  M   GC  D   Y++ ID + ++G V  A+ L +  + +  +     + ++I    
Sbjct: 604 LFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLA 663

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                D    ++EE K+ G++ N++ Y++L+D  G+  R  +   I +E+   GL+PN  
Sbjct: 664 KIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVY 723

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKE-KGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
           T+  LL A  +A    + L  ++ MK  KG    +T Y+ L+     V   ++AF  +++
Sbjct: 724 TWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHIT-YSILINGLCRVRKFNKAFVFWQE 782

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M+  +  +P++ T+++MI   +  G ++EA ++F      G  P+     ++I+    ++
Sbjct: 783 MQ-KQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSR 841

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV--ECVEKSNSKLGYVVK 518
           R  +  +         I  + R  GC  N+ T+T    L  L   EC+E++ + +G V++
Sbjct: 842 RAMEAYK---------IFEETRMKGC--NIHTKTCIALLDALQKDECLEQA-AIVGAVLR 889

Query: 519 LLLEEQ 524
            + + Q
Sbjct: 890 EIAKSQ 895



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 156/356 (43%), Gaps = 9/356 (2%)

Query: 150 LALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC 209
           +++  F    K   E+IL  +     R+  DL +  R F        +P    ++TLI  
Sbjct: 154 MSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMRKFK------FRPAFSAYTTLIGA 207

Query: 210 ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
                  +  +  F +M   G +     ++++I  + R G ++ A  L D  ++     D
Sbjct: 208 LSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHAD 267

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
              ++  I  +G AG  D     + E+K+ G+ P+ +TY +++  + +  R  +   I++
Sbjct: 268 IVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFE 327

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           +M  N   P    Y +++  YG A   ++  S+    K +G   SV  YN +L      G
Sbjct: 328 QMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKG 387

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
              EA   FE+MK  ++  P+  T++ +I +    G+V  A  + + M EAG  PN+  +
Sbjct: 388 RLGEALRTFEEMK--KDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTV 445

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPKEELGKLVE 504
             +I    KA++ D+       +     +PD+  FC  +  +  Q   ++  +L E
Sbjct: 446 NIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYE 501



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 154/346 (44%), Gaps = 15/346 (4%)

Query: 151 ALTYFTNKLKASKEVIL---YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++YF    + + + +    Y+  + V  K    D  E++  +M   G  P   T   LI
Sbjct: 111 AISYFRWTERKTDQALCPEAYDSLLLVMAKNVKFDYFEQILGEMSIAGFGPSTKTCIELI 170

Query: 208 -SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
            SC + N L  +  +  + M  F   P    Y+++I A       ++   L+ + +   +
Sbjct: 171 LSCIKSNKL-REGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGY 229

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
            +  + F+T+I+++   G  D  L++ +EMK+  +  +++ YN  +D  G+A +      
Sbjct: 230 EVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWK 289

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
            + E+  +GL P+  TY S++    +    ++ + ++ +M++         YNT++    
Sbjct: 290 FFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYG 349

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G  DEA+ + E  K +  C P    ++ ++T    +G++ EA   F EM +    PNL
Sbjct: 350 SAGKFDEAYSLLERQK-ARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDA-APNL 407

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 484
                LI    KA   +   +  + + E G+ P+        DR C
Sbjct: 408 STYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLC 453



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 67/128 (52%), Gaps = 4/128 (3%)

Query: 138 ILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           +L+ +   +    AL  F N   LK +   I Y++ +    + R  +KA   + +M  +G
Sbjct: 728 LLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQG 787

Query: 196 VKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           +KP+ +T++T+I+  A+  N+  +A   FER  + G  PD+ +Y+++I+    +     A
Sbjct: 788 LKPNTITYTTMIAGLAKAGNIA-EASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEA 846

Query: 255 FGLYDRAR 262
           + +++  R
Sbjct: 847 YKIFEETR 854


>gi|255661202|gb|ACU25770.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 426

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 200/403 (49%), Gaps = 25/403 (6%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDTA---ALALTYFTNKLKASK---EVILYNV 170
           DD  S L+ + +D +  D V+  N +         + A++ F+ +LK S    +++ YN 
Sbjct: 26  DDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSRAISIFS-RLKRSGIAPDLVAYNS 84

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
            + VF K +   +A  L  +M   GV PD V++ TL++    N    +A+  F  M    
Sbjct: 85  MINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTMYVENQKFLEALSLFSEMREIQ 144

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDG 288
           C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG A  F  
Sbjct: 145 CSFDLTTCNIMIDVYGQLGMAKEADKLFWSMR--KMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            ++++  M+   ++ N++TYN+++   G+     +   + +EM D G+ PN  TY++++ 
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMVIYGKTLEHEKANNLIQEMQDRGIEPNAITYSTIIS 262

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            +G+    +    ++++++  G+++   LY T++      G    A  + +++K     +
Sbjct: 263 IWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMIVAYERAGLVAHAKRLLQELK-----R 317

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD+    + I I +  G++ EA  +F + +EAG   ++ V   +I  + K ++  +VV  
Sbjct: 318 PDNIPRDTAIHILAGAGRIEEATWVFRQAVEAGEVKDITVFERMINLFSKHKKYPNVVEV 377

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 511
            +++  LG  P       +LN          GKL E  +K+NS
Sbjct: 378 FDKMRGLGYFPHSNVIALVLNA--------YGKLHE-FDKANS 411



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 146/305 (47%), Gaps = 10/305 (3%)

Query: 185 ERLFDDML--------DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           E LFDD L        DR V  D V +S LI  +R     ++A+  F R+   G  PD +
Sbjct: 22  EGLFDDALSWLQKMEEDR-VPGDLVLYSNLIELSRKLCDYSRAISIFSRLKRSGIAPDLV 80

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            Y+SMI+ +G+A     A  L    R      D  ++ TL+ +Y     F   L+++ EM
Sbjct: 81  AYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTMYVENQKFLEALSLFSEM 140

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           + I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LLR YG A   
Sbjct: 141 REIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDAELF 200

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+     +P++ T+S+
Sbjct: 201 GEAIHLFRLMQRKNIEQNVVTYNSMMVIYGKTLEHEKANNLIQEMQ-DRGIEPNAITYST 259

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R L  L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMIVAYERAGLVAHAKRLLQELKRPD 319

Query: 477 ITPDD 481
             P D
Sbjct: 320 NIPRD 324



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 4/226 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M DRG++P+ +T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMVIYGKTLEHEKANNLIQEMQDRGIEPNAITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++   G + D + Y +MI AY RAG V  A     R   E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMIVAYERAGLVAHA----KRLLQELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  +++   + K+   V  ++
Sbjct: 319 DNIPRDTAIHILAGAGRIEEATWVFRQAVEAGEVKDITVFERMINLFSKHKKYPNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
            +M   G  P+ N  A +L AYG+    +   SVY EM+++G   S
Sbjct: 379 DKMRGLGYFPHSNVIALVLNAYGKLHEFDKANSVYMEMQDEGCAFS 424


>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/482 (23%), Positives = 217/482 (45%), Gaps = 18/482 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           E+  Y+  ++ F K   L+K   L  +M   G  PD  +++ LI          +A++ F
Sbjct: 288 EITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVF 347

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           ++M + GC P+A TYS +++ YG+ G  +    L+ + +      D   ++ LI+++G  
Sbjct: 348 KQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEG 407

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G F   + ++ ++    + PNM TY  L+   G+       K I   M   G+ P+   Y
Sbjct: 408 GYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAY 467

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+ AYG+A   ++ L  +  M E G + ++  YN+L+   A  G   E   I   M+ 
Sbjct: 468 SGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMRE 527

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                 ++ +FS +I      G+  EA   F EM +   E +   L  ++  Y  A   D
Sbjct: 528 Y-GISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVD 586

Query: 464 DVVRALNRLPELGITPDDRFCGCL-LNVMTQTPK-EELGKLV-ECVEKSNSKLGYVVKLL 520
           +       +   GI P    C C+ L V  +  + ++  +L+ E ++   S +  V+   
Sbjct: 587 ESKEQFIEIKASGILPS-VLCYCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIG-- 643

Query: 521 LEEQDIEGDFKKEAT-----ELFNSISKD---VKKAYCNCLIDLCVNLNLLENACKLLEL 572
              Q I+GD+  ++       +F+ ++ +       + N L++    L     A ++L  
Sbjct: 644 ---QMIKGDYDDDSNWQMVEYVFDKLNAEGCGFGMRFYNTLLEALWWLGQKGRAARVLTE 700

Query: 573 GLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTG 632
                ++ ++  +S   WS+ +  +  G A TA+ +W+N +++ L  GE+ P L  +  G
Sbjct: 701 ATKRGLFPELFRQSKLVWSVDVHRMWEGGAYTAVSLWVNKMNEMLMDGEDLPQLAAVVVG 760

Query: 633 HG 634
            G
Sbjct: 761 RG 762



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 178/371 (47%), Gaps = 11/371 (2%)

Query: 160 KASKEVILYNVTMKV-FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           + S  ++ YN  +    R   D +    LF +M   GV+PD VT++TL+S      L ++
Sbjct: 213 RVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDE 272

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A   F+ M   G  P+  TYS +++ +G+ G +E    L     +E +  D ++++ LI+
Sbjct: 273 AEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIE 332

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            +   G+    ++V+++M+A G  PN  TY+ LL+  G+  R   V+ ++ +M ++   P
Sbjct: 333 AHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEP 392

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  TY  L+R +G   Y ++ ++++ ++ ++ +  ++  Y  L+  C   G  ++A +I 
Sbjct: 393 DATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKIL 452

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
             M + +   P S  +S +I          EA   FN M E G +  +    SLI  + +
Sbjct: 453 FHM-NGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFAR 511

Query: 459 AQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVV 517
                +    L+R+ E GI+ + + F G +         EE  K    +EK        +
Sbjct: 512 GGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEK--------M 563

Query: 518 KLLLEEQDIEG 528
           +  L+EQ +EG
Sbjct: 564 RCELDEQTLEG 574



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 160/329 (48%), Gaps = 2/329 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y + + +  +   L+K   +FD+M  +GV     +++ LI+    N     ++E  ERM
Sbjct: 150 IYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERM 209

Query: 227 PSFGCDPDALTYSSMIDAYGRAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
                 P+ LTY+++I+A  R   + E   GL+   R+E  + D   ++TL+      G 
Sbjct: 210 KRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGL 269

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D    V++ M   G+ P + TY+ +++T G+  +  +V  + KEM   G  P+ ++Y  
Sbjct: 270 GDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNV 329

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ A+ +    ++ + V+++M+  G   + + Y+ LL +    G  D+  E+F  MK S 
Sbjct: 330 LIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKES- 388

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           + +PD+ T++ +I +    G   E   +F+++++   +PN+     L+   GK    +D 
Sbjct: 389 SAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDA 448

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQT 494
            + L  +   GI P  +    L+    Q 
Sbjct: 449 KKILFHMNGKGIVPSSKAYSGLIEAYGQA 477



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 127/264 (48%), Gaps = 2/264 (0%)

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           C P+   Y+ +I   GR G +E    ++D   ++       +++ LI  YG  G ++  L
Sbjct: 144 CKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSL 203

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRA 349
            + E MK   V PN++TYN +++   R    W+ +  ++ EM   G+ P+  TY +LL A
Sbjct: 204 ELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSA 263

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
                 G++   V++ M E G+   +T Y+ ++     +G  ++   + ++M+ SE   P
Sbjct: 264 CAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEME-SEGYLP 322

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           D  +++ +I   +  G + EA  +F +M  AG  PN    + L+  YGK  R DDV    
Sbjct: 323 DISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELF 382

Query: 470 NRLPELGITPDDRFCGCLLNVMTQ 493
            ++ E    PD      L+ V  +
Sbjct: 383 LQMKESSAEPDATTYNILIRVFGE 406



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 109/218 (50%), Gaps = 3/218 (1%)

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQ 323
           K R+  N FS + K +   G++   L +++ M + I  KPN   Y  ++  +GR     +
Sbjct: 107 KNRLSLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEK 166

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
              I+ EM   G+  +  +Y +L+ AYGR    E +L +   MK + +  ++  YNT++ 
Sbjct: 167 CSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVIN 226

Query: 384 MCADVGYTDEA-FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            CA      E    +F +M+  E  QPD  T++++++ C+ RG   EAE +F  M+E G 
Sbjct: 227 ACARGDLDWEGLLGLFAEMR-HEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGI 285

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            P +   + +++ +GK  + + V   L  +   G  PD
Sbjct: 286 VPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPD 323



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 148/369 (40%), Gaps = 46/369 (12%)

Query: 97  TRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFT 156
           + YN L++  A L S     D VF  ++  G         I+LN              F 
Sbjct: 325 SSYNVLIEAHAKLGSIKEAMD-VFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFL 383

Query: 157 NKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
              ++S E     YN+ ++VF +     +   LF D++D  + P+  T+  L+       
Sbjct: 384 QMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGG 443

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
           L   A +    M   G  P +  YS +I+AYG+A        LYD A             
Sbjct: 444 LHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQA-------ALYDEA------------- 483

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
                          L  +  M  +G K  + TYN+L+ T  R     + + I   M + 
Sbjct: 484 ---------------LVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREY 528

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G+S N  +++ ++  Y ++   E+ +  + EM++   +L       +L +    G  DE+
Sbjct: 529 GISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDES 588

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            E F ++K+S    P    +  M+ + +  G+  +A  + +EM++         ++S+ Q
Sbjct: 589 KEQFIEIKAS-GILPSVLCYCMMLAVYAKNGRWDDASELLDEMIKT-------RVSSIHQ 640

Query: 455 CYGKAQRTD 463
             G+  + D
Sbjct: 641 VIGQMIKGD 649


>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 170/360 (47%), Gaps = 6/360 (1%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVI-LYNVTMKVFRKCRDLDKAERLFDDMLDRGV 196
           IL  +   +  ALA+  F     +  + + +YN  M V+ +     K + L D M +RG 
Sbjct: 221 ILGVLGKANQEALAVEIFARAESSVGDTVQVYNAMMGVYARNGRFSKVKELLDLMRERGC 280

Query: 197 KPDNVTFSTLISCARMNN---LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
            PD V+F+TLI+ ARM +    PN A++    +   G  PD +TY+++I A  R  N+E 
Sbjct: 281 VPDLVSFNTLIN-ARMKSGAMEPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEE 339

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  ++    + + + D   ++ +I +YG          +++E+++ G  P+ +TYN+LL 
Sbjct: 340 AVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLY 399

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
              R     +V+ I +EM   G   +  TY +++  YG+    +  + +YR+MK  G   
Sbjct: 400 AFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNP 459

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
               Y  L+         +EA  +  +M  +   +P   T+S++I   +  GK  EAE  
Sbjct: 460 DAVTYTVLIDSLGKASKVEEAANVMSEMLDA-GVKPTLHTYSALICAYAKAGKREEAEET 518

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           FN M  +G +P+    + ++  + +       +   + +   G TPD+     +++ + +
Sbjct: 519 FNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVR 578



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 173/376 (46%), Gaps = 56/376 (14%)

Query: 120 FSVLRCLGDDFLEQDCV---IILNNMTNPDTAALALT-----YFTNKLKAS---KEVILY 168
           FS ++ L D   E+ CV   +  N + N    + A+         N+++ S    ++I Y
Sbjct: 265 FSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDIITY 324

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS----CARMNNLPNKAVEWFE 224
           N  +    +  +L++A  +F DM     +PD  T++ +IS    CAR      KA E F+
Sbjct: 325 NTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCAR----ARKAEELFK 380

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            + S G  PDA+TY+S++ A+ R GN E    + +      +  D   ++T+I +YG  G
Sbjct: 381 ELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQG 440

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  + +Y +MK+ G  P+ +TY  L+D++G+A +  +   +  EM D G+ P  +TY+
Sbjct: 441 RHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYS 500

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+ AY +A                                   G  +EA E F  M+ S
Sbjct: 501 ALICAYAKA-----------------------------------GKREEAEETFNCMRRS 525

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              +PD   +S M+       ++ +A  +++EM+  GF P+  +   ++    +    D 
Sbjct: 526 -GIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENMWDV 584

Query: 465 VVRALNRLPEL-GITP 479
           V R +  + EL G+ P
Sbjct: 585 VDRIIRDMEELSGMNP 600



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 131/638 (20%), Positives = 243/638 (38%), Gaps = 91/638 (14%)

Query: 119  VFSVLRCLG---DDFLEQDCVIILNNMTNPDTAALALTYF-TNKLKASKEVILYNVTMKV 174
            +FS +R  G    + L Q  V +   M  P+TA   L +   N +    ++ +Y   ++ 
Sbjct: 724  IFSDMRFNGVESSECLYQGMVSVYCRMDLPETAHHLLYHAEKNGIILDNDISVYIDIVET 783

Query: 175  FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
            + K +   KAE L   +  R  K D   ++ LI     +    +A   F  M   G  P 
Sbjct: 784  YGKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMRDGPSPT 843

Query: 235  ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
              + + ++ A      +   + +    ++   +I  ++    ++ +  AGN      +Y 
Sbjct: 844  VDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFEVQKIYN 903

Query: 295  EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT---------------------------- 326
             MKA G  P M  Y  +L  + + KR   V+T                            
Sbjct: 904  GMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYLGIE 963

Query: 327  -------IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
                   IY+++ D  L P+  TY +L+  Y R R  E+  S+  +M+  G++  +  Y 
Sbjct: 964  DFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYR 1023

Query: 380  TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
            +L+         ++A E+FE+++S+   + D   +  M+      G   +AE +   M E
Sbjct: 1024 SLITAFNKQRMYEQAEELFEELRSN-GYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKE 1082

Query: 440  AGFEPNLFVLTSLIQCYGKAQRTDDV---------------------------------- 465
            +G EP +  +  L+  YGK+ + ++                                   
Sbjct: 1083 SGIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKA 1142

Query: 466  -VRALNRLPELGITPDDRFCGCLLNVMTQTP-KEELGKLVECVEKSNSKLGYVVKLLLEE 523
             +  L  + E GI PD R   C +   T +    E   L+  ++ +   L   ++LL E+
Sbjct: 1143 GIEKLTEMKEAGIEPDHRIWTCFIRAATLSEGTNEAIVLLNALQDAGFDLP--IRLLKEK 1200

Query: 524  QDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT-DI 582
             +       +  E    +  +      N L+DL     L   A  + +L +   +Y  DI
Sbjct: 1201 SESLVSEVDQCLERLEPVEDNAAFNLVNALVDLLWAFELRATASWVFQLAIKRSIYRHDI 1260

Query: 583  QSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKG 642
               +   W    + LS G+AL A          +L+   E P  + + TG    +Y+   
Sbjct: 1261 FRVADKDWGADFRKLSAGSALDA----------SLQGYPESPKSVVLITGTA--EYNMVS 1308

Query: 643  LASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLE 680
            L S  ++ L E+ +PF     + G  +    + + WL+
Sbjct: 1309 LDSTLKACLWEMGSPFLPCKTRQGILVAKAHSLRMWLK 1346



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 113/236 (47%), Gaps = 7/236 (2%)

Query: 250 NVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
           N + A  LY+      W   PNA   +T++ + G A      + ++   ++  V   +  
Sbjct: 194 NWQRALELYECLNLRHW-YAPNARMVATILGVLGKANQEALAVEIFARAES-SVGDTVQV 251

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV--YRE 365
           YN ++    R  R  +VK +   M + G  P+  ++ +L+ A  ++   E  L++    E
Sbjct: 252 YNAMMGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQLLNE 311

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           ++  G++  +  YNTL++ C+     +EA  +F DM+S   CQPD WT+++MI++     
Sbjct: 312 VRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMES-HRCQPDLWTYNAMISVYGRCA 370

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +  +AE +F E+   GF P+     SL+  + +   T+ V      + + G   D+
Sbjct: 371 RARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDE 426



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 127/268 (47%), Gaps = 4/268 (1%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           P+A   ++++   G+A    +A  ++ RA +         ++ ++ +Y   G F     +
Sbjct: 213 PNARMVATILGVLGKANQEALAVEIFARAESSVGDT-VQVYNAMMGVYARNGRFSKVKEL 271

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGR--AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            + M+  G  P+++++N L++   +  A  P     +  E+  +G+ P+  TY +L+ A 
Sbjct: 272 LDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDIITYNTLISAC 331

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
            R    E+ ++V+ +M+    Q  +  YN ++++        +A E+F++++S +   PD
Sbjct: 332 SRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELES-KGFFPD 390

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
           + T++S++   S  G   +   +  EM++ GF  +     ++I  YGK  R D  ++   
Sbjct: 391 AVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYR 450

Query: 471 RLPELGITPDDRFCGCLLNVMTQTPKEE 498
            +   G  PD      L++ + +  K E
Sbjct: 451 DMKSSGRNPDAVTYTVLIDSLGKASKVE 478



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 153/389 (39%), Gaps = 43/389 (11%)

Query: 122 VLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDL 181
           V R  G D +  + +I +         A+ +         + + + Y V +    K   +
Sbjct: 418 VKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKV 477

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           ++A  +  +MLD GVKP   T+S LI          +A E F  M   G  PD L YS M
Sbjct: 478 EEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVM 537

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-G 300
           +D + R   ++ A GLY     E +  D   +  ++        +D    +  +M+ + G
Sbjct: 538 LDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDMEELSG 597

Query: 301 VKPNMITYNNLLDTMG---RAKRPWQVKTIYKEMTDNGL--------------------- 336
           + P +I  +++L   G    A +  +V        D+ +                     
Sbjct: 598 MNPQVI--SSVLVKGGCYDHAAKMLKVAISNGYELDHEIFLSIMSSYSSSARYSEACELL 655

Query: 337 ------SPN--WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
                 +PN       +L+    +A+  +  L  YR   E G   S T+Y +L+  C   
Sbjct: 656 EFSREHAPNDIQMITEALIIILCKAKKLDAALEEYRSKGELGQFRSCTMYESLIQECIQN 715

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE-AEAMFNEMLEAG--FEPN 445
              D A +IF DM+ +   +     +  M+++  CR  + E A  +     + G   + +
Sbjct: 716 ELFDVASQIFSDMRFN-GVESSECLYQGMVSV-YCRMDLPETAHHLLYHAEKNGIILDND 773

Query: 446 LFVLTSLIQCYGKA---QRTDDVVRALNR 471
           + V   +++ YGK    Q+ + +V +L +
Sbjct: 774 ISVYIDIVETYGKLKIWQKAESLVGSLRQ 802


>gi|159465707|ref|XP_001691064.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
 gi|158279750|gb|EDP05510.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
          Length = 630

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 163/332 (49%), Gaps = 38/332 (11%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEW 222
           +V  Y  T+ +    +D+D+A  L ++M  R ++ +  TF+ L++ C +   LP  A+E 
Sbjct: 67  DVYSYTATISLCIYSQDVDRAMELMNEMRQRNIERNVHTFTALMNVCIKCGKLP-LALEI 125

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           +  M +  C P+ +TY+                                   TL+ +YG 
Sbjct: 126 YNNMRAANCMPNVVTYN-----------------------------------TLVDVYGK 150

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G ++  ++V + MK  GV+P + TYN L+       +P +   +Y+ +  +G +PN  T
Sbjct: 151 LGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGYTPNSTT 210

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +L+ AYG+       L VY+EM  + M+ SV  Y++L++ C   G  + A  IF +M+
Sbjct: 211 YNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQWETALRIFNEMQ 270

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
             +NC P++ T++S++T C+  G+  +A  +F +M   G  P++   T+LI  Y +  + 
Sbjct: 271 -QDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTALISAYERGGQW 329

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
              ++A  ++   G  PD      +++ + +T
Sbjct: 330 QKALQAFGKMCMQGCKPDAIVYNAIIDTLWET 361



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 120/235 (51%), Gaps = 2/235 (0%)

Query: 150 LALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           LAL  + N   A+    V+ YN  + V+ K    ++A  + D M   GV+P   T++TLI
Sbjct: 121 LALEIYNNMRAANCMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLI 180

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
               M N P +A+  ++R+ S G  P++ TY+++I AYG+   +  A  +Y     +   
Sbjct: 181 IACNMCNQPREALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNME 240

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                +S+LI     AG ++  L ++ EM+     PN +TYN+L+    +  +  +   +
Sbjct: 241 RSVITYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEV 300

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +++MT +G +P+  TY +L+ AY R    +  L  + +M  +G +    +YN ++
Sbjct: 301 FEQMTAHGCTPDVVTYTALISAYERGGQWQKALQAFGKMCMQGCKPDAIVYNAII 355



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 114/256 (44%), Gaps = 1/256 (0%)

Query: 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
           + V  +   M V  KC  L  A  ++++M      P+ VT++TL+          +A+  
Sbjct: 101 RNVHTFTALMNVCIKCGKLPLALEIYNNMRAANCMPNVVTYNTLVDVYGKLGRWERAIHV 160

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            + M   G +P   TY+++I A         A  +Y R  ++ +  +   ++ LI  YG 
Sbjct: 161 LDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGYTPNSTTYNALISAYGK 220

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
                  L VY+EM    ++ ++ITY++L+    +A +      I+ EM  +   PN  T
Sbjct: 221 TMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVT 280

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y SL+ A  +    E    V+ +M   G    V  Y  L++     G   +A + F  M 
Sbjct: 281 YNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTALISAYERGGQWQKALQAFGKM- 339

Query: 403 SSENCQPDSWTFSSMI 418
             + C+PD+  ++++I
Sbjct: 340 CMQGCKPDAIVYNAII 355



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 6/197 (3%)

Query: 134 DCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           + +II  NM N    ALA+         +     YN  +  + K   L KA  ++ +ML 
Sbjct: 177 NTLIIACNMCNQPREALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLR 236

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           + ++   +T+S+LIS          A+  F  M    C P+ +TY+S++ A  + G  E 
Sbjct: 237 QNMERSVITYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEK 296

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  ++++        D   ++ LI  Y   G +   L  + +M   G KP+ I YN ++D
Sbjct: 297 ATEVFEQMTAHGCTPDVVTYTALISAYERGGQWQKALQAFGKMCMQGCKPDAIVYNAIID 356

Query: 314 TMGRAKRPWQVKTIYKE 330
           T+      W+   I+ +
Sbjct: 357 TL------WETGIIWAQ 367


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 170/337 (50%), Gaps = 5/337 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + Y+V +  F K    D A RLFD+M   G+ P    ++TL++     +   KA+   
Sbjct: 201 DTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAI-YFKSGDEKALGLV 259

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   GC P   TY+ +I   G++G VE A+ ++     +  + D    + LI ++G A
Sbjct: 260 QEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKA 319

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNT 342
           G  +  L ++++M+++   PN++TYN ++  +  +K P  +  + +++M  NG++P+  T
Sbjct: 320 GRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFT 379

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y+ L+  + +    E  L +  EM EKG       Y +L+         + A E+F ++K
Sbjct: 380 YSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELK 439

Query: 403 SSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             ENC +  +  ++ MI      G+ SEA  +FNEM + G  P+++   +L+    +A  
Sbjct: 440 --ENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGM 497

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
            ++   AL  + E G TPD      +LN + +T + E
Sbjct: 498 IEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPE 534



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 155/317 (48%), Gaps = 4/317 (1%)

Query: 151 ALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A + F N LK     +V+L N  + +F K   L+ A +LFD M      P+ VT++T+I 
Sbjct: 290 AYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIK 349

Query: 209 CARMNNLP-NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
               +  P ++A  WFE+M + G  P + TYS +ID + +   VE A  L +    + + 
Sbjct: 350 ALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFP 409

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
             P A+ +LI   G A  ++    ++ E+K    + +   Y  ++  +G+  RP +   +
Sbjct: 410 PCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDL 469

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           + EM   G +P+   Y +L+    RA   E+  S  R M+E G    +  +N +L   A 
Sbjct: 470 FNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLAR 529

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G  ++A E+F  MK S   +PD+ ++++++   S  G   EA  +  EM   GFE +  
Sbjct: 530 TGRPEQATEMFMKMKDSL-IKPDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHI 588

Query: 448 VLTSLIQCYGKAQRTDD 464
             +S+++  GK    D+
Sbjct: 589 TYSSILEAVGKVDEDDE 605



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 156/339 (46%), Gaps = 11/339 (3%)

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE-KWRIDPNAFST 275
           NKA+  F ++ S  C P A TY+SMI    + G+ E    LY    NE     D   +S 
Sbjct: 148 NKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCFPDTMTYSV 207

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           L+  +   G  D  + +++EMKA G+ P    Y  LL    ++     +  + +EM D G
Sbjct: 208 LVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDEKALGLV-QEMKDKG 266

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
            +P   TY  L++  G++   ED  SV+  M + G +  V L N L+ +    G  ++A 
Sbjct: 267 CAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDAL 326

Query: 396 EIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           ++F+ M+S + C P+  T++++I  +   +   SEA + F +M   G  P+ F  + LI 
Sbjct: 327 KLFDQMRSLK-CAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILID 385

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK--LVECVEKSNSK 512
            + K  R +  +  L  + E G  P       L+N + +  + E      +E  E     
Sbjct: 386 GFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRS 445

Query: 513 LGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCN 551
              +  ++++     G    EA +LFN    ++KK  CN
Sbjct: 446 SARIYAVMIKNLGKCGR-PSEAVDLFN----EMKKIGCN 479



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 147/324 (45%), Gaps = 12/324 (3%)

Query: 113 SATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAAL----ALTYF--TNKLKASKEVI 166
           S   +D +SV   +  D  + D V+++NN+ N    A     AL  F     LK +  V+
Sbjct: 284 SGRVEDAYSVFLNMLKDGCKPD-VVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVV 342

Query: 167 LYNVTMK-VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
            YN  +K +F       +A   F+ M   GV P + T+S LI      N   KA+   E 
Sbjct: 343 TYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEE 402

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P    Y S+I+A G+A   E A  L+   +    R     ++ +IK  G  G 
Sbjct: 403 MDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGR 462

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               ++++ EMK IG  P++  YN L+  + RA    +  +  + M +NG +P+ N++  
Sbjct: 463 PSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNI 522

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +L    R    E    ++ +MK+  ++     YNT+L   +  G  +EA ++  +M  S 
Sbjct: 523 ILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREM-GSR 581

Query: 406 NCQPDSWTFSSMITICSCRGKVSE 429
             + D  T+SS   I    GKV E
Sbjct: 582 GFEYDHITYSS---ILEAVGKVDE 602



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 154/311 (49%), Gaps = 12/311 (3%)

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
           +K+F+   D +KA  +    +D  +  + +     I      N+  +  +W  +  +F  
Sbjct: 40  LKIFKWGPDAEKALEVLKLKVDHRLVREVLKIDVEI------NVKIQFFKWAGKRRNF-- 91

Query: 232 DPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           + D  TY  +I      G   EM   + +  R+    I P   S ++K+ G A   +  L
Sbjct: 92  EHDLTTYMPLIRCLDDCGLFGEMWKMIQEMVRSPTCVIGPADLSEVVKILGKAKMVNKAL 151

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRA 349
           +V+ ++K+   KP   TYN+++  + +     ++  +Y EM + G   P+  TY+ L+ A
Sbjct: 152 SVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCFPDTMTYSVLVSA 211

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
           + +    +  + ++ EMK  G+  +  +Y TLLA+    G  ++A  + ++MK  + C P
Sbjct: 212 FVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSG-DEKALGLVQEMK-DKGCAP 269

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
             +T++ +I      G+V +A ++F  ML+ G +P++ ++ +LI  +GKA R +D ++  
Sbjct: 270 TVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLF 329

Query: 470 NRLPELGITPD 480
           +++  L   P+
Sbjct: 330 DQMRSLKCAPN 340



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 74/151 (49%), Gaps = 10/151 (6%)

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + +++  G+A+     LSV+ ++K +  + + + YN+++ M    G+ ++  E++ +M +
Sbjct: 135 SEVVKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCN 194

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
             +C PD+ T+S +++     G+   A  +F+EM   G  P   + T+L+  Y K+    
Sbjct: 195 EGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDEK 254

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
                      LG+  + +  GC   V T T
Sbjct: 255 ----------ALGLVQEMKDKGCAPTVFTYT 275



 Score = 43.1 bits (100), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 81/186 (43%), Gaps = 16/186 (8%)

Query: 98  RYNSLVKLAADL-DSCSATEDDVFSVL-RCLGDDFLEQDCVIILNNMTNPDTAALALTYF 155
           RY +  +L  +L ++C  +   +++V+ + LG      + V + N M             
Sbjct: 427 RYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEM------------- 473

Query: 156 TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
             K+  + +V  YN  M    +   +++A      M + G  PD  + + +++       
Sbjct: 474 -KKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGR 532

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
           P +A E F +M      PDA++Y++++ +  R+G  E A  L     +  +  D   +S+
Sbjct: 533 PEQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSS 592

Query: 276 LIKLYG 281
           +++  G
Sbjct: 593 ILEAVG 598


>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/482 (23%), Positives = 217/482 (45%), Gaps = 18/482 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           E+  Y+  ++ F K   L+K   L  +M   G  PD  +++ LI          +A++ F
Sbjct: 288 EITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVF 347

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           ++M + GC P+A TYS +++ YG+ G  +    L+ + +      D   ++ LI+++G  
Sbjct: 348 KQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEG 407

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G F   + ++ ++    + PNM TY  L+   G+       K I   M   G+ P+   Y
Sbjct: 408 GYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAY 467

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+ AYG+A   ++ L  +  M E G + ++  YN+L+   A  G   E   I   M+ 
Sbjct: 468 SGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMRE 527

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                 ++ +FS +I      G+  EA   F EM +   E +   L  ++  Y  A   D
Sbjct: 528 Y-GISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVD 586

Query: 464 DVVRALNRLPELGITPDDRFCGCL-LNVMTQTPK-EELGKLV-ECVEKSNSKLGYVVKLL 520
           +       +   GI P    C C+ L V  +  + ++  +L+ E ++   S +  V+   
Sbjct: 587 ESKEQFIEIKASGILPS-VLCYCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIG-- 643

Query: 521 LEEQDIEGDFKKEAT-----ELFNSISKD---VKKAYCNCLIDLCVNLNLLENACKLLEL 572
              Q I+GD+  ++       +F+ ++ +       + N L++    L     A ++L  
Sbjct: 644 ---QMIKGDYDDDSNWQMVEYVFDKLNAEGCGFGMRFYNTLLEALWWLGQKGRAARVLTE 700

Query: 573 GLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTG 632
                ++ ++  +S   WS+ +  +  G A TA+ +W+N +++ L  GE+ P L  +  G
Sbjct: 701 ATKRGLFPELFRQSKLVWSVDVHRMWEGGAYTAVSLWVNKMNEMLMDGEDLPQLAAVVVG 760

Query: 633 HG 634
            G
Sbjct: 761 RG 762



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 178/371 (47%), Gaps = 11/371 (2%)

Query: 160 KASKEVILYNVTMKV-FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           + S  ++ YN  +    R   D +    LF +M   GV+PD VT++TL+S      L ++
Sbjct: 213 RVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDE 272

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A   F+ M   G  P+  TYS +++ +G+ G +E    L     +E +  D ++++ LI+
Sbjct: 273 AEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIE 332

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            +   G+    ++V+++M+A G  PN  TY+ LL+  G+  R   V+ ++ +M ++   P
Sbjct: 333 AHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEP 392

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  TY  L+R +G   Y ++ ++++ ++ ++ +  ++  Y  L+  C   G  ++A +I 
Sbjct: 393 DATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKIL 452

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
             M + +   P S  +S +I          EA   FN M E G +  +    SLI  + +
Sbjct: 453 FHM-NGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFAR 511

Query: 459 AQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVV 517
                +    L+R+ E GI+ + + F G +         EE  K    +EK        +
Sbjct: 512 GGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEK--------M 563

Query: 518 KLLLEEQDIEG 528
           +  L+EQ +EG
Sbjct: 564 RCELDEQTLEG 574



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 160/329 (48%), Gaps = 2/329 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y + + +  +   L+K   +FD+M  +GV     +++ LI+    N     ++E  ERM
Sbjct: 150 IYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERM 209

Query: 227 PSFGCDPDALTYSSMIDAYGRAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
                 P+ LTY+++I+A  R   + E   GL+   R+E  + D   ++TL+      G 
Sbjct: 210 KRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGL 269

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D    V++ M   G+ P + TY+ +++T G+  +  +V  + KEM   G  P+ ++Y  
Sbjct: 270 GDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNV 329

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ A+ +    ++ + V+++M+  G   + + Y+ LL +    G  D+  E+F  MK S 
Sbjct: 330 LIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKES- 388

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           + +PD+ T++ +I +    G   E   +F+++++   +PN+     L+   GK    +D 
Sbjct: 389 SAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDA 448

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQT 494
            + L  +   GI P  +    L+    Q 
Sbjct: 449 KKILFHMNGKGIVPSSKAYSGLIEAYGQA 477



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 127/264 (48%), Gaps = 2/264 (0%)

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           C P+   Y+ +I   GR G +E    ++D   ++       +++ LI  YG  G ++  L
Sbjct: 144 CKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSL 203

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRA 349
            + E MK   V PN++TYN +++   R    W+ +  ++ EM   G+ P+  TY +LL A
Sbjct: 204 ELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSA 263

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
                 G++   V++ M E G+   +T Y+ ++     +G  ++   + ++M+ SE   P
Sbjct: 264 CAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEME-SEGYLP 322

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           D  +++ +I   +  G + EA  +F +M  AG  PN    + L+  YGK  R DDV    
Sbjct: 323 DISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELF 382

Query: 470 NRLPELGITPDDRFCGCLLNVMTQ 493
            ++ E    PD      L+ V  +
Sbjct: 383 LQMKESSAEPDATTYNILIRVFGE 406



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 109/218 (50%), Gaps = 3/218 (1%)

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQ 323
           K R+  N FS + K +   G++   L +++ M + I  KPN   Y  ++  +GR     +
Sbjct: 107 KNRLSLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEK 166

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
              I+ EM   G+  +  +Y +L+ AYGR    E +L +   MK + +  ++  YNT++ 
Sbjct: 167 CSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVIN 226

Query: 384 MCADVGYTDEA-FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            CA      E    +F +M+  E  QPD  T++++++ C+ RG   EAE +F  M+E G 
Sbjct: 227 ACARGDLDWEGLLGLFAEMR-HEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGI 285

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            P +   + +++ +GK  + + V   L  +   G  PD
Sbjct: 286 VPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPD 323



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 148/369 (40%), Gaps = 46/369 (12%)

Query: 97  TRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFT 156
           + YN L++  A L S     D VF  ++  G         I+LN              F 
Sbjct: 325 SSYNVLIEAHAKLGSIKEAMD-VFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFL 383

Query: 157 NKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
              ++S E     YN+ ++VF +     +   LF D++D  + P+  T+  L+       
Sbjct: 384 QMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGG 443

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
           L   A +    M   G  P +  YS +I+AYG+A        LYD A             
Sbjct: 444 LHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQA-------ALYDEA------------- 483

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
                          L  +  M  +G K  + TYN+L+ T  R     + + I   M + 
Sbjct: 484 ---------------LVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREY 528

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G+S N  +++ ++  Y ++   E+ +  + EM++   +L       +L +    G  DE+
Sbjct: 529 GISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDES 588

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            E F ++K+S    P    +  M+ + +  G+  +A  + +EM++         ++S+ Q
Sbjct: 589 KEQFIEIKAS-GILPSVLCYCMMLAVYAKNGRWDDASELLDEMIKT-------RVSSIHQ 640

Query: 455 CYGKAQRTD 463
             G+  + D
Sbjct: 641 VIGQMIKGD 649


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 162/324 (50%), Gaps = 3/324 (0%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLP 216
           ++  S +V+ YN  +  + K   L++   LF++M D G  PD +T++ LI+C  +   +P
Sbjct: 317 EMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMP 376

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
            +A E+F  M + G  P+ +TYS++IDA+ + G ++ A  L+   R      +   +++L
Sbjct: 377 -RAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSL 435

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           I     AGN      +  +M   GVK N++TY  LLD + +A R  + + +++ M  +G+
Sbjct: 436 IDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGI 495

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
           SPN   Y +L+  Y +A   ED + + ++M E  ++  + LY +++         +E   
Sbjct: 496 SPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKL 555

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           I E+MK S     +    +++I      GK S+A   F EM + G E  +     LI   
Sbjct: 556 ILEEMK-SRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGL 614

Query: 457 GKAQRTDDVVRALNRLPELGITPD 480
            KA   +  V    R+  LG+ P+
Sbjct: 615 CKAGIVELAVDYFCRMLSLGLQPN 638



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 192/414 (46%), Gaps = 56/414 (13%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
             + F+DM+  G+ P   T++ +I    +  +L N     F +M   G  PD +TY+S+I
Sbjct: 273 VRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSR-RLFVQMREMGLSPDVVTYNSLI 331

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
           D YG+ G++E    L++                                   EMK +G  
Sbjct: 332 DGYGKVGSLEEVASLFN-----------------------------------EMKDVGCV 356

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P++ITYN L++   + ++  +    + EM +NGL PN  TY++L+ A+ +    +  + +
Sbjct: 357 PDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKL 416

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
           + +M+  G+  +   Y +L+      G   EA+++  DM  +   + +  T+++++    
Sbjct: 417 FVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQA-GVKLNIVTYTALLDGLC 475

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
             G++ EAE +F  ML+ G  PN  V T+L+  Y KA+R +D ++ L ++ E  I PD  
Sbjct: 476 KAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLI 535

Query: 483 FCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFK----KEATELF 538
             G ++       K E  KL+  +E+  S+ G     ++    I+  FK     +A   F
Sbjct: 536 LYGSIIWGHCSQRKLEETKLI--LEEMKSR-GISANPVISTTIIDAYFKAGKSSDALNFF 592

Query: 539 NSISKDVKKA----YCNCLIDLCVNLNLLENA----CKLLELGL--TLEVYTDI 582
             +     +A    YC  LID      ++E A    C++L LGL   + VYT +
Sbjct: 593 QEMQDVGVEATIVTYC-VLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSL 645



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 173/416 (41%), Gaps = 74/416 (17%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I YN  +  + K   + +A   F +M + G+KP+ VT+STLI       +   A++ F
Sbjct: 358 DIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLF 417

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF-----------------------GLYDR 260
             M   G  P+  TY+S+IDA  +AGN+  A+                       GL   
Sbjct: 418 VDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKA 477

Query: 261 AR----NEKWR------IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
            R     E +R      I PN   ++ L+  Y  A   +  + + ++M    +KP++I Y
Sbjct: 478 GRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILY 537

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
            +++      ++  + K I +EM   G+S N     +++ AY +A    D L+ ++EM++
Sbjct: 538 GSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQD 597

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS------------------SENC--- 407
            G++ ++  Y  L+      G  + A + F  M S                    NC   
Sbjct: 598 VGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIES 657

Query: 408 -------------QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
                         PD   F+++I      G + EA  + + M E   E +L V TSL+ 
Sbjct: 658 AKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVS 717

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 510
            + +        +  N + E GI P++  C CLL    +      G+L E +E  N
Sbjct: 718 GFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKR-----GQLDEAIELKN 768



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 140/316 (44%), Gaps = 1/316 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ Y   +    K   + +AE +F  ML  G+ P+   ++ L+           A++  +
Sbjct: 464 IVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILK 523

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M      PD + Y S+I  +     +E    + +  ++     +P   +T+I  Y  AG
Sbjct: 524 QMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAG 583

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                LN ++EM+ +GV+  ++TY  L+D + +A         +  M   GL PN   Y 
Sbjct: 584 KSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYT 643

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL+    +    E    ++ EM+ +GM   +T +  L+      G   EA  +   M + 
Sbjct: 644 SLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRM-TE 702

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              + D   ++S+++  S  G++ +A   FNEM+E G  P   +   L++ Y K  + D+
Sbjct: 703 LAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDE 762

Query: 465 VVRALNRLPELGITPD 480
            +   N +  +G+  +
Sbjct: 763 AIELKNEMERMGLITE 778



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 22/364 (6%)

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST--LIKLYGTAGNFDG 288
           C   +  +  +   +   G +E A   + R RN  +R  P A S   L+     +GN   
Sbjct: 215 CVSGSGVFDVLFSVFVELGLLEEANECFSRMRN--FRTLPKARSCNFLLHRLSKSGNGQL 272

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
               + +M   G+ P++ TYN ++D + +       + ++ +M + GLSP+  TY SL+ 
Sbjct: 273 VRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLID 332

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            YG+    E+  S++ EMK+ G    +  YN L+           AFE F +MK++   +
Sbjct: 333 GYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNN-GLK 391

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           P+  T+S++I      G +  A  +F +M   G  PN F  TSLI    KA    +  + 
Sbjct: 392 PNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKL 451

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEE----LGKLVECVEKSNSKL--GYVVKLLLE 522
           LN + + G+          LN++T T   +     G+++E  E   S L  G      + 
Sbjct: 452 LNDMLQAGVK---------LNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVY 502

Query: 523 EQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 582
              + G  K E  E    I K + +  CN   DL +  +++   C   +L  T  +  ++
Sbjct: 503 TALVHGYIKAERMEDAMKILKQMTE--CNIKPDLILYGSIIWGHCSQRKLEETKLILEEM 560

Query: 583 QSRS 586
           +SR 
Sbjct: 561 KSRG 564


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 181/365 (49%), Gaps = 12/365 (3%)

Query: 113 SATEDDVFSVLRCLGDDFLEQDCVI---ILNNMTNPDTAALALTYFTNK--LKASKEVIL 167
           SAT+   F++ R   D  +E   V+   +LN +   +    A+ +F  +  L    +   
Sbjct: 181 SATDAGKFNIARTWVDG-VEFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCS 239

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERM 226
           +N+ ++   +   +DKA  LF++M   G  PD +T++TLI+   R+N +        E +
Sbjct: 240 FNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELL 299

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAG 284
                 PD +TY+S+I  Y + G +E A  L++   +    I PNAF+   LI  +G  G
Sbjct: 300 SKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSG--IKPNAFTFNILINGFGKVG 357

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           +     N+YEEM  +G  P++IT+ +L+D   R  +  +   ++ E+    LSPN  T+A
Sbjct: 358 DMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFA 417

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L  A  +     +     R++K + +     +YN ++      G  DEA  I  +M+  
Sbjct: 418 ILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEME-E 476

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           + C+PD  T++ +I     +G++SEA ++FN ML  G  P+   +TSLI C  KA   ++
Sbjct: 477 KRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLKAGMPNE 536

Query: 465 VVRAL 469
             R +
Sbjct: 537 AYRIM 541



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 147/360 (40%), Gaps = 48/360 (13%)

Query: 138 ILNNMTNPDTAALALTYFT---NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           ++  + NP+   LAL +F      L        Y+  ++   +    + A+ ++D M   
Sbjct: 110 VVRGLNNPE---LALKFFQLSRVNLNLCHSFRTYSFLLRSLSEMGFHESAKAVYDCMNID 166

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G  PD      L+S A      N A  W +     G +   + Y+ +++   R   V+ A
Sbjct: 167 GHSPDASVLGFLVSSATDAGKFNIARTWVD-----GVEFSLVVYNKLLNQLVRGNQVDEA 221

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
              +          D  +F+ LI+     G  D    ++ EM+  G  P++ITYN L++ 
Sbjct: 222 VCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLING 281

Query: 315 MGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
             R     +   + KE+ + N LSP+  TY S++  Y +                     
Sbjct: 282 FCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCK--------------------- 320

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
                         +G  ++A  +F +M SS   +P+++TF+ +I      G +  AE M
Sbjct: 321 --------------LGKMEKASILFNNMISS-GIKPNAFTFNILINGFGKVGDMVSAENM 365

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           + EML  G  P++   TSLI  + +  + +  ++  + L    ++P++     L N + +
Sbjct: 366 YEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCK 425



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 8/242 (3%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V+ Y   +  + K   ++KA  LF++M+  G+KP+  TF+ LI+          A  
Sbjct: 305 SPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAEN 364

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR--ARNEKWRIDPN--AFSTLI 277
            +E M   GC PD +T++S+ID + R G VE +  L+    ARN    + PN   F+ L 
Sbjct: 365 MYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARN----LSPNEYTFAILT 420

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
                            ++K   +      YN ++D   +A    +   I  EM +    
Sbjct: 421 NALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCK 480

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P+  TY  L+  +       + +S++  M   G         +L++     G  +EA+ I
Sbjct: 481 PDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLKAGMPNEAYRI 540

Query: 398 FE 399
            +
Sbjct: 541 MQ 542



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 22/173 (12%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +YN  +  F K  ++D+A  +  +M ++  KPD +T++ LI    M    ++A+  F RM
Sbjct: 450 MYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRM 509

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAF------------GLYDRARNEKWRID---PN 271
              GC PD++T +S+I    +AG    A+            GL    RN   R +   P 
Sbjct: 510 LGTGCAPDSITMTSLISCLLKAGMPNEAYRIMQIASEDFNLGLKSLKRNVPLRTNTDIPV 569

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG-RAKRPWQ 323
           AF + +   G   +F G       M           YN LLD    +A  PW+
Sbjct: 570 AFMSTVD--GLTNHFPG----LASMPLATCNEGQSLYNILLDKYCIKAAHPWE 616


>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
 gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
          Length = 1429

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 144/277 (51%), Gaps = 2/277 (0%)

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV--EMAFGLYDRARNEKWRIDPNAFS 274
           +KA E  + M   GC PD ++++++I+A  ++G +   +   L D  RN   R D   ++
Sbjct: 242 SKAQELLDAMRQRGCVPDLISFNTLINARLKSGGLTPNLVVELLDMVRNSGLRPDAITYN 301

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
           TL+       N +G + V+E+M+A   +P++ TYN ++   GR     + + ++ E+   
Sbjct: 302 TLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFIELELK 361

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G SP+  TY SLL A+ R R  E    VY++M++ G       YNT++ M    G  D A
Sbjct: 362 GFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLA 421

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            ++++DMK      PD+ T++ +I       +  EA A+ +EML+ G +P L   ++LI 
Sbjct: 422 LQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKPTLQTYSALIC 481

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            Y KA + ++     + +   G  PD+     +L+V+
Sbjct: 482 GYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVL 518



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 120/558 (21%), Positives = 241/558 (43%), Gaps = 68/558 (12%)

Query: 168  YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
            +N  M  + +C   ++A  +F+ M+  G  P   + + L+    ++    +     E + 
Sbjct: 790  WNSLMSAYAECGCYERARAIFNTMMRDGPSPTVESINKLLHALCVDGRLEELYVVVEELQ 849

Query: 228  SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD-------------------------RAR 262
              G      +   M+DA+ RAGN+     +Y                          R R
Sbjct: 850  DMGFKISKSSILLMLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVR 909

Query: 263  NEK----------WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            + +          ++++   +++++K+Y    ++   + VY+ +K  G++P+  TYN L+
Sbjct: 910  DAEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLI 969

Query: 313  DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                R +RP +  ++ ++M + GL P  +TY SL+ A+G+ +  E    ++ E+  KG++
Sbjct: 970  IMYCRDRRPEEGYSLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLK 1029

Query: 373  LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            L  + Y+T++ +  D G   +A ++ + MK++   +P   T   ++   S  G   EAE 
Sbjct: 1030 LDRSFYHTMMKISRDSGSDSKAEKLLQMMKNA-GIEPTLATMHLLMVSYSSSGNPQEAEK 1088

Query: 433  MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCLLN 489
            + + +     E      +S+I  Y    R+ D    + RL E+   G+ PD R   C + 
Sbjct: 1089 VLSNLKNTEVELTTLPYSSVIDAY---LRSKDYKSGIERLLEMKKEGLEPDHRIWTCFVR 1145

Query: 490  VMT-QTPKEELGKLVECVEKSN-----SKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543
              +    K E+  L++ ++          LG   +LL+ E  ++G F+K       SI  
Sbjct: 1146 AASFSKEKSEVMLLLKALQDIGFDIPIRLLGGRPELLVSE--VDGCFEK-----LKSIED 1198

Query: 544  DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAA 602
            +    + N L++L     L   +  + +L +   +++ D+   +   W    + LS GAA
Sbjct: 1199 NAALNFANALLNLLWAFELRATSSWVFQLAIKRGIFSLDVFRVADKDWGADFRRLSGGAA 1258

Query: 603  LTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSP 662
            L A          +LE   E P  + + TG    +Y+   L    ++ L E+ +PF    
Sbjct: 1259 LDA----------SLEGYPESPKSVVLITGTA--EYNGVSLDKTLKACLWEMGSPFLPCK 1306

Query: 663  DKVGWFLTTEAAAKSWLE 680
             + G  +    + + WL+
Sbjct: 1307 TRTGLLVAKAHSLRMWLK 1324



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 4/300 (1%)

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           + TL+ C   N    +A + F  +   GC+P      SM+  Y + G  E A+ + ++A 
Sbjct: 684 YETLLHCCVANEHYAEASQVFSELRLSGCEPSESVCKSMVVVYCKLGFPETAYQVVNQAE 743

Query: 263 NEKWRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
            + +    +  ++ +I+ YG    +    +V   ++  G  P++ T+N+L+         
Sbjct: 744 TKGFHFACSPMYTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCY 803

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
            + + I+  M  +G SP   +   LL A       E+   V  E+++ G ++S +    +
Sbjct: 804 ERARAIFNTMMRDGPSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFKISKSSILLM 863

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEA 440
           L   A  G   E  +I+  MK++    P    +  MI +  C+GK V +AE M +EM EA
Sbjct: 864 LDAFARAGNIFEVNKIYSSMKAA-GYLPTIRLYRMMIELL-CKGKRVRDAEIMVSEMEEA 921

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
            F+  L +  S+++ Y   +     V+   R+ E G+ PD+     L+ +  +  + E G
Sbjct: 922 NFKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEG 981



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/409 (21%), Positives = 160/409 (39%), Gaps = 107/409 (26%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERM 226
           YN  + V+ +C    +AERLF ++  +G  PD VT+++L+ + AR  N   K  E +++M
Sbjct: 335 YNAMISVYGRCGLAAEAERLFIELELKGFSPDAVTYNSLLYAFARERN-TEKVKEVYQQM 393

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA-------------- 272
              G   D +TY+++I  YG+ G +++A  LY   +    R +P+A              
Sbjct: 394 QKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGR-NPDAITYTVLIDSLGKAN 452

Query: 273 -----------------------FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
                                  +S LI  Y  AG  +   + +  M   G KP+ + Y+
Sbjct: 453 RSVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYS 512

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE- 368
            +LD + R     +   +Y++M  +G +P+ + Y  ++    +    +D     R+M+E 
Sbjct: 513 VMLDVLLRGNETRKAWVLYRDMISDGHTPSHSLYELMILGLMKENRSDDVQKTIRDMEEL 572

Query: 369 -------------KG-------MQLSVTLYN-------TLLAMCADV---GYTDEAFEIF 398
                        KG        QL V + N       TLL++       G   EAFE+ 
Sbjct: 573 CGMNPLEISSVLVKGECFDLAARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELL 632

Query: 399 EDMKSSEN------------------------------------CQPDSWTFSSMITICS 422
           E +K   +                                    C   S  + +++  C 
Sbjct: 633 EFLKEHASGSKRLINEALIVLHCKVNNIGAALDEYLADPCVHGWCFGGSTMYETLLHCCV 692

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
                +EA  +F+E+  +G EP+  V  S++  Y K    +   + +N+
Sbjct: 693 ANEHYAEASQVFSELRLSGCEPSESVCKSMVVVYCKLGFPETAYQVVNQ 741



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 109/209 (52%)

Query: 164  EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
            E+ ++N  +K++    D  K  +++  + + G++PD  T++TLI     +  P +     
Sbjct: 926  ELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEGYSLM 985

Query: 224  ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            ++M + G DP   TY S+I A+G+   +E A  L++   ++  ++D + + T++K+   +
Sbjct: 986  QQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDS 1045

Query: 284  GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            G+      + + MK  G++P + T + L+ +   +  P + + +   + +  +      Y
Sbjct: 1046 GSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTEVELTTLPY 1105

Query: 344  ASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
            +S++ AY R++  +  +    EMK++G++
Sbjct: 1106 SSVIDAYLRSKDYKSGIERLLEMKKEGLE 1134


>gi|110740599|dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
          Length = 546

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 176/344 (51%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + V+ K +   +A  L  +M + GV P+ V++STL+
Sbjct: 112 AISIFS-RLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLL 170

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           S    N+   +A+  F  M    C  D  T + MID YG+   V+ A  L+   R  K  
Sbjct: 171 SVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLR--KMD 228

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++T++++YG A  F   ++++  M+   ++ N++TYN ++   G+     +  
Sbjct: 229 IEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKAT 288

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM   G+ PN  TY++++  +G+A   +   +++++++  G+++   LY T++   
Sbjct: 289 NLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAY 348

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
             VG    A  +  ++K      PD+    + ITI +  G+  EA  +F +  E+G   +
Sbjct: 349 ERVGLMGHAKRLLHELK-----LPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKD 403

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I  Y + QR  +V+    ++   G  PD      +LN
Sbjct: 404 ISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLN 447



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/455 (21%), Positives = 194/455 (42%), Gaps = 75/455 (16%)

Query: 152 LTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
           L +   + K +  V  YNV ++   + +  D A  LFD+M  R + PD  T+STLI+   
Sbjct: 10  LDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFG 69

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
              + + A+ W ++M       D + YS++I+   R  +   A  ++ R +      D  
Sbjct: 70  KEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLV 129

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           A++++I +YG A  F     + +EM   GV PN ++Y+ LL       +  +  +++ EM
Sbjct: 130 AYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEM 189

Query: 332 TDNG-----------------------------------LSPNWNTYASLLRAYGRARYG 356
            +                                     + PN  +Y ++LR YG A   
Sbjct: 190 KEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELF 249

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            + + ++R M+ K ++ +V  YNT++ +       ++A  + ++M+ S   +P++ T+S+
Sbjct: 250 GEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQ-SRGIEPNAITYST 308

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY-------------------- 456
           +I+I    GK+  A  +F ++  +G E +  +  ++I  Y                    
Sbjct: 309 IISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPD 368

Query: 457 -----------GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 505
                       KA RT++      +  E G   D    GC++N+ ++  +     ++E 
Sbjct: 369 NIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQR--YVNVIEV 426

Query: 506 VEKSNSKLGY-----VVKLLLEEQDIEGDFKKEAT 535
            EK  +  GY     V+ ++L     + +F+K  T
Sbjct: 427 FEKMRTA-GYFPDSNVIAMVLNAYGKQREFEKADT 460



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 31/218 (14%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  +K++ K  + +KA  L  +M  RG++P+ +T+ST+IS
Sbjct: 252 AIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIIS 311

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR--------------------- 247
                   ++A   F+++ S G + D + Y +MI AY R                     
Sbjct: 312 IWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIP 371

Query: 248 ----------AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
                     AG  E A  ++ +A       D + F  +I LY     +   + V+E+M+
Sbjct: 372 RETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMR 431

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
             G  P+      +L+  G+ +   +  T+Y+EM + G
Sbjct: 432 TAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEG 469



 Score = 42.4 bits (98), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 13/205 (6%)

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           SV  YN +L         D A  +F++M+      PD +T+S++IT     G    A + 
Sbjct: 22  SVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRA-LAPDRYTYSTLITSFGKEGMFDSALSW 80

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
             +M +     +L + ++LI+   +       +   +RL   GITPD      ++NV   
Sbjct: 81  LQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVY-- 138

Query: 494 TPKEELGKLVECVEKSNSKLGYVVKLL----LEEQDIEGDFKKEATELFNSISKDVKKAY 549
             K +L +    + K  ++ G +   +    L    +E     EA  +F  + K+V  A 
Sbjct: 139 -GKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEM-KEVNCAL 196

Query: 550 ----CNCLIDLCVNLNLLENACKLL 570
               CN +ID+   L++++ A +L 
Sbjct: 197 DLTTCNIMIDVYGQLDMVKEADRLF 221


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 161/317 (50%), Gaps = 1/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ +N  +    K   ++ A ++FD+M   G+ PD V+++TL+S        ++A+  F 
Sbjct: 225 LVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFA 284

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  PD +T++S+I A  RAGN+E A  L  + R    R++   F+ LI  +   G
Sbjct: 285 EMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNG 344

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  L   +EM+   ++P+++ YN L++   +  R  + + +  EM   G+ P+  TY+
Sbjct: 345 FLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYS 404

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           ++L  Y +    +    + R+M +KG+      Y++L+    +     +A E+FE M   
Sbjct: 405 TILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQL 464

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              QPD +T++++I      G V +A ++ +EM++ G  P++   + LI    K+ RT +
Sbjct: 465 -GLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKE 523

Query: 465 VVRALNRLPELGITPDD 481
             R L +L      PD+
Sbjct: 524 AQRLLFKLYYEDPVPDN 540



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 158/320 (49%), Gaps = 6/320 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLF---DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           V  YN+ ++    C    + E L    DDM   G  P+ VT++TL++        + A  
Sbjct: 154 VYTYNILVRAL--CARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAER 211

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
               M   G  P  +T++++++   +AG +E A  ++D    E    D  +++TL+  Y 
Sbjct: 212 LVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYC 271

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AG     L V+ EM   GV P+++T+ +L+  M RA    +   +  +M + GL  N  
Sbjct: 272 KAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEF 331

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+ +L+  + R  + +D L   +EM+E  +Q SV  YN L+     +G  DEA E+  +M
Sbjct: 332 TFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEM 391

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           + ++  +PD  T+S++++     G    A  +  +ML+ G  P+    +SLI+   + +R
Sbjct: 392 E-AKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERR 450

Query: 462 TDDVVRALNRLPELGITPDD 481
             D      ++ +LG+ PD+
Sbjct: 451 LGDACELFEKMLQLGLQPDE 470



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 156/335 (46%), Gaps = 22/335 (6%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   +    +  +L++A  L   M +RG++ +  TF+ LI     N   + A+   
Sbjct: 294 DVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAM 353

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M      P  + Y+ +I+ Y + G ++ A  L      +  + D   +ST++  Y   
Sbjct: 354 KEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKI 413

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+ D    +  +M   GV P+ ITY++L+  +   +R      ++++M   GL P+  TY
Sbjct: 414 GDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTY 473

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+  + +    +  LS++ EM +KG+   V  Y+ L+   +    T EA  +   +  
Sbjct: 474 TTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKL-Y 532

Query: 404 SENCQPDSWTFSSMITIC---------------SCRGKVSEAEAMFNEMLEAGFEPNLFV 448
            E+  PD+  + +++  C               S +G +++A+ ++  ML+  ++ +  V
Sbjct: 533 YEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSV 592

Query: 449 LTSLIQCYGKAQRTDDVVRALN---RLPELGITPD 480
            + LI  +    R  ++++AL+   +L   G +P+
Sbjct: 593 YSVLIHGH---CRGGNIMKALSFHKQLLRCGFSPN 624



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 4/215 (1%)

Query: 268 IDPNAFS--TLIKLYGTAGNFDGCLNVY-EEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
           + PN ++   L++     G  +  L V  ++M+  G  PN++TYN L+    RA      
Sbjct: 150 VAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAA 209

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
           + +   M + G+ P+  T+ +++    +A   ED   ++ EM  +G+      YNTL++ 
Sbjct: 210 ERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSG 269

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
               G   EA  +F +M + +   PD  TF+S+I      G +  A A+  +M E G   
Sbjct: 270 YCKAGCLHEALAVFAEM-AQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRM 328

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           N F  T+LI  + +    DD + A+  + E  I P
Sbjct: 329 NEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQP 363



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 152/328 (46%), Gaps = 27/328 (8%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A LA+     + +    V+ YNV +  + K   +D+A  L  +M  +G+KPD VT+ST
Sbjct: 347 DDALLAMKEM-RECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYST 405

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           ++S        + A E   +M   G  PDA+TYSS+I        +  A  L+++     
Sbjct: 406 ILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLG 465

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
            + D   ++TLI  +   GN    L++++EM   GV P+++TY+ L+D + ++ R  + +
Sbjct: 466 LQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQ 525

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            +  ++      P+   Y +L+     A + +  +++ +    KG+              
Sbjct: 526 RLLFKLYYEDPVPDNIKYEALMHCCRTAEF-KSVVALLKGFSMKGLM------------- 571

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEP 444
                 ++A ++++ M    + + D   +S +I    CRG  + +A +   ++L  GF P
Sbjct: 572 ------NQADKVYQSMLD-RHWKLDGSVYSVLIH-GHCRGGNIMKALSFHKQLLRCGFSP 623

Query: 445 NLFVLTSLIQCY---GKAQRTDDVVRAL 469
           N     SL++     G     D+V++ L
Sbjct: 624 NSTSTISLVRGLFEEGMTVEADNVIQEL 651



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 36/181 (19%)

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G  P+++ YN +L  +  A  P   + +   M  +G++PN  TY  L+RA          
Sbjct: 115 GYAPSLLAYNAVLLALSDASLP-SARRLLASMLRDGVAPNVYTYNILVRA---------- 163

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
                                   +CA  G  +EA  +  D      C P+  T+++++ 
Sbjct: 164 ------------------------LCAR-GQREEALGVVGDDMRGAGCAPNVVTYNTLVA 198

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                G+V  AE +   M E G  P+L    +++    KA R +D  +  + +   G+TP
Sbjct: 199 AFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTP 258

Query: 480 D 480
           D
Sbjct: 259 D 259


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 186/407 (45%), Gaps = 26/407 (6%)

Query: 112  CSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTY----------------- 154
            C  T  ++  V+R LG+  + +  + I   +       +A  Y                 
Sbjct: 1145 CVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVH 1204

Query: 155  -FTNKLKAS----KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC 209
               N++        + + Y+  +  F K    D A +L ++M + G++P    ++ LI+ 
Sbjct: 1205 QLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIAL 1264

Query: 210  ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
                N  + A+  FE M    C PD  TY+ +I   G+AG ++ A+  +   + E  R D
Sbjct: 1265 FFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPD 1324

Query: 270  PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIY 328
                + +I   G AG  D  + +++EM+ +   P+++TYN ++  +  +K R  +V + +
Sbjct: 1325 TVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWF 1384

Query: 329  KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            + M ++G+SP+  TY+ L+  + +    E  + +  EM EKG       Y +L+      
Sbjct: 1385 ERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKA 1444

Query: 389  GYTDEAFEIFEDMKSSENCQPDSW-TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
               D A E+F+++K  ENC   S   ++ MI      G++ +A  MF+EM + G  P+++
Sbjct: 1445 KRYDLACELFQELK--ENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVY 1502

Query: 448  VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
               +L+    +    D+ +  + R+ E G  PD      +LN + +T
Sbjct: 1503 AYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKT 1549



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 140/300 (46%), Gaps = 10/300 (3%)

Query: 164  EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-----SCARMNNLPNK 218
            + +  N  +    K   LD A +LF +M      P  VT++T+I     S +R + +P+ 
Sbjct: 1324 DTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPS- 1382

Query: 219  AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
               WFERM   G  P + TYS +ID + +   +E A  L +    + +   P A+ +LI 
Sbjct: 1383 ---WFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLID 1439

Query: 279  LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
              G A  +D    +++E+K      +   Y  ++  +G+A R      ++ EM   G +P
Sbjct: 1440 ALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAP 1499

Query: 339  NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
            +   Y +L+    R    ++ LS  R M+E G    +  YN +L   A  G    A E+ 
Sbjct: 1500 DVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEML 1559

Query: 399  EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
             +MK S   +PD  ++++++   S  G   EA  +  EM   GFE +L   +S+++  GK
Sbjct: 1560 SNMKQS-TVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGK 1618



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 115/240 (47%), Gaps = 7/240 (2%)

Query: 241  MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
            +++ YG     EM   + +  RN    + P   S ++++ G A      + ++ ++K   
Sbjct: 1125 VVEQYG-----EMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRK 1179

Query: 301  VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDT 359
             +P    YN+++  +    +  +V  +Y EM+  G   P+  TY++L+ A+ +    +  
Sbjct: 1180 CQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSA 1239

Query: 360  LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
            + +  EMKE GMQ +  +Y  L+A+         A  +FE+M+  + C+PD +T++ +I 
Sbjct: 1240 IQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMR-HQYCRPDVFTYTELIR 1298

Query: 420  ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                 G++ EA   F EM   G  P+   + ++I   GKA R DD ++    +  L   P
Sbjct: 1299 GLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIP 1358



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 101/229 (44%), Gaps = 2/229 (0%)

Query: 168  YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
            Y++ +  F K   ++KA  L ++M ++G  P    + +LI         + A E F+ + 
Sbjct: 1399 YSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK 1458

Query: 228  SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                   A  Y+ MI   G+AG ++ A  ++D         D  A++ L+      G  D
Sbjct: 1459 ENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLD 1518

Query: 288  GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              L+    M+  G  P++ +YN +L+ + +   P +   +   M  + + P+  +Y ++L
Sbjct: 1519 EALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVL 1578

Query: 348  RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG--YTDEA 394
             A   A   E+   + +EM   G +  +  Y+++L     V   YTD+ 
Sbjct: 1579 GALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKVDHEYTDQG 1627



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 9/175 (5%)

Query: 161  ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
             S    +Y V +K   K   LD A  +FD+M   G  PD   ++ L+S      + ++A+
Sbjct: 1462 GSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEAL 1521

Query: 221  EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
                RM   GC PD  +Y+ +++   + G    A  +    +    R D  +++T++   
Sbjct: 1522 STMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGAL 1581

Query: 281  GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
              AG F+    + +EM  +G + ++ITY+++L+ +G+         +  E TD G
Sbjct: 1582 SHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGK---------VDHEYTDQG 1627


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 170/322 (52%), Gaps = 5/322 (1%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           ++ +V+ Y+  +  +    +L KA +L DDM  +G+KP+  T++++I          +A 
Sbjct: 289 STPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAE 348

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           +    M S    PD + Y+++I  + + G+V  A   +D   ++K   D   ++TLI+ +
Sbjct: 349 KVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGF 408

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           G  G      N++ EM + G+KP+ +TY  L+D   +A       +++ EM   G++PN 
Sbjct: 409 GQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNI 468

Query: 341 NTYASLLRAYGRARYGE-DTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
            TY +L+   G  ++GE DT + +  EM++KG+QL+V +YN+++      G  ++A ++ 
Sbjct: 469 VTYGALID--GLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLM 526

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           ++M+ +    PD+ T++++I      G + +A  +  EML+ G +P +     L+  +  
Sbjct: 527 KEMEVA-GIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCM 585

Query: 459 AQRTDDVVRALNRLPELGITPD 480
               +D  R L  + E GI PD
Sbjct: 586 LGMLEDGDRLLGWMLEKGIVPD 607



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 181/415 (43%), Gaps = 22/415 (5%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  + +  K     +AE++  +M+ + + PDNV ++TLI           A +WF+ M 
Sbjct: 331 YNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEML 390

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S    PD +TY+++I  +G+ G V     L+    +   + D   ++TLI +Y  AG   
Sbjct: 391 SKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMV 450

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              +++ EM  +G+ PN++TY  L+D + +         +  EM   GL  N   Y S++
Sbjct: 451 NAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMV 510

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +A   E  + + +EM+  G+      Y T++     +G  D+A ++ ++M      
Sbjct: 511 NGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEM-LDRGL 569

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           QP   TF+ ++      G + + + +   MLE G  P+     +L++ +      +   +
Sbjct: 570 QPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTK 629

Query: 468 ALNRLPELGITPDDRFCGCLL--NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQD 525
              R+   G+ PD      L+  +   +  KE      E +EK     GYV  +      
Sbjct: 630 IYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEK-----GYVPTVTSYNAL 684

Query: 526 IEGDFKK----EATELFNSISKDVKKA---YCNCLIDLC-------VNLNLLENA 566
           I+  +KK    EA ELF  +      A     N  +D+C       + LNL + A
Sbjct: 685 IKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEA 739



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 153/322 (47%), Gaps = 3/322 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S + I Y   ++ F +   + + + LF +M+ RG+KPD VT++TLI           A
Sbjct: 393 KISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNA 452

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
                 M   G  P+ +TY ++ID   + G ++ A  L D  R +  +++   +++++  
Sbjct: 453 FSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNG 512

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
              AGN +  + + +EM+  G+ P+ ITY  ++D   R     +   + +EM D GL P 
Sbjct: 513 ICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPT 572

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             T+  L+  +      ED   +   M EKG+      YNTL+         +   +I++
Sbjct: 573 VVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYK 632

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
            M+ ++   PDS T++ +I    C+ + + EA  ++ EM+E G+ P +    +LI+ + K
Sbjct: 633 RMR-NQGVAPDSNTYNILIK-GHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYK 690

Query: 459 AQRTDDVVRALNRLPELGITPD 480
            ++  +       +   G+  D
Sbjct: 691 KRKFXEARELFEEMRGHGLVAD 712



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 90/180 (50%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I Y   +  + +  D+DKA +L  +MLDRG++P  VTF+ L++   M  +        
Sbjct: 537 DAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLL 596

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  PDA+TY++++  +    ++     +Y R RN+    D N ++ LIK +  A
Sbjct: 597 GWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKA 656

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            N      +Y+EM   G  P + +YN L+    + ++  + + +++EM  +GL  +   Y
Sbjct: 657 RNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIY 716



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 78/149 (52%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ +NV M  F     L+  +RL   ML++G+ PD +T++TL+    + N  N   + ++
Sbjct: 573 VVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYK 632

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           RM + G  PD+ TY+ +I  + +A N++ A+ LY     + +     +++ LIK +    
Sbjct: 633 RMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKR 692

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
            F     ++EEM+  G+  +   YN  +D
Sbjct: 693 KFXEARELFEEMRGHGLVADGEIYNFFVD 721



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/300 (20%), Positives = 135/300 (45%), Gaps = 15/300 (5%)

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
           NAF + I     A N +G     +     G+  N  +YN ++ ++ R  +  +   +  +
Sbjct: 229 NAFLSRI-----ANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQ 283

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           M     +P+  +Y++++  Y      +  L +  +M+ KG++ +   YN+++ +   +G 
Sbjct: 284 MDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGK 343

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
           + EA ++  +M  S+   PD+  ++++I      G V  A   F+EML     P+    T
Sbjct: 344 SFEAEKVLREM-MSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYT 402

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 510
           +LIQ +G+  +  +     + +   G+ PD+     L++V  +      G++V      N
Sbjct: 403 TLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKA-----GEMVNAFSLHN 457

Query: 511 S--KLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 568
              ++G    ++     I+G  K    +  N +  +++K      +++C+  +++   CK
Sbjct: 458 EMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKK--GLQLNVCIYNSMVNGICK 515


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 182/358 (50%), Gaps = 4/358 (1%)

Query: 151 ALTYF-TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC 209
           ALT F   K  A   +  YN+ + +      +++A ++ D+M   G+ P+ ++ + ++  
Sbjct: 370 ALTLFDVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDR 429

Query: 210 ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
               N   +A   FE     GC+P+++TY S+ID  G+ G ++ A+ L+++  +     +
Sbjct: 430 LCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDAN 489

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
           P  +++LI+ +   G  +    +Y+EM   G +P++   N  +D + +A    + + I++
Sbjct: 490 PIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFE 549

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           +M   G  P+  +Y+ L+    +A    +T ++++ M ++G  L    YN ++      G
Sbjct: 550 DMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSG 609

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
             D+A+E+ E+MK  ++  P   T+ S++   +   ++ EA  +F E    G E N+ + 
Sbjct: 610 KVDKAYEVLEEMK-VKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILY 668

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
           +SLI  +GK  R D+    L  + + G+TP+      L++ + +T  EE+ + + C +
Sbjct: 669 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKT--EEIDEALICFQ 724



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 149/328 (45%), Gaps = 3/328 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y   ++ F      +   +++ +M+ RG +PD    +T + C        K    FE 
Sbjct: 491 IIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFED 550

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M SFG  PD  +YS +I    +AG       ++     + + +D  A++ ++     +G 
Sbjct: 551 MKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGK 610

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D    V EEMK   V P + TY +++D + +  R  +   +++E    G+  N   Y+S
Sbjct: 611 VDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSS 670

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  +G+    ++   +  EM +KG+  +V  +N+L+         DEA   F+ MK  +
Sbjct: 671 LIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMK 730

Query: 406 NCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            C P+++T+S +I  +C  + K ++A   + EM + G  PN+   T++I    K     D
Sbjct: 731 -CSPNTYTYSILINGLCRVQ-KYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITD 788

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMT 492
                 R    G  PD      L+  M+
Sbjct: 789 AYSLFERFKTNGGIPDSASFNALIEGMS 816



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 143/304 (47%), Gaps = 2/304 (0%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           + R L+ A R+   M     +P    ++ LI        P +A+E   +M   G +    
Sbjct: 153 RSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVP 212

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            +++++ A  R G +E A  L D  +      D   ++  I  +G AG+ D     + E+
Sbjct: 213 LFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHEL 272

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           KA G++P+ ++Y +++  + +A R  + + ++ +M      P    Y +++  YG A   
Sbjct: 273 KAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERF 332

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           +D   +   ++E+G   SV  +N++L         DEA  +F+ MK  ++ +P+  T++ 
Sbjct: 333 DDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMK--KDAKPNISTYNI 390

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I +    G+V+EA  + +EM  AG  PNL  +  ++    KA + ++  R      E G
Sbjct: 391 IIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERG 450

Query: 477 ITPD 480
             P+
Sbjct: 451 CNPN 454



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 177/411 (43%), Gaps = 49/411 (11%)

Query: 141 NMTNPDTAALALTYF-TNKLKASKEVI-------------LYNVTMKVFRKCRDLDKAER 186
            + NP  AAL  T   + +L+ +  VI              Y V +    + R  ++A  
Sbjct: 138 GLPNPACAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALE 197

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           L   M D G +     F+TL+           A+   + +     +PD + Y+  ID +G
Sbjct: 198 LLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFG 257

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           +AG+V+MA+  +   +    R D  ++++++ +   AG       ++ +M+A    P   
Sbjct: 258 KAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAY 317

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
            YN ++   G A+R      + + + + G  P+  ++ S+L   G+ R  ++ L+++  M
Sbjct: 318 AYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVM 377

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK------------------------ 402
           K K  + +++ YN ++ M    G  +EA++I ++M+                        
Sbjct: 378 K-KDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQL 436

Query: 403 ----------SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
                     S   C P+S T+ S+I     +GK+ +A  +F +ML+AG + N  + TSL
Sbjct: 437 EEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSL 496

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 503
           I+ +    R +D  +    +   G  PD       ++ + +  + E G+ +
Sbjct: 497 IRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAI 547



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 139/293 (47%), Gaps = 1/293 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +    K     +   +F  M  +G   D   ++ ++     +   +KA E  E M 
Sbjct: 563 YSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMK 622

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                P   TY S++D   +   ++ A+ L++ A+++   ++   +S+LI  +G  G  D
Sbjct: 623 VKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRID 682

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + EEM   G+ PN+ T+N+L+D + + +   +    ++ M +   SPN  TY+ L+
Sbjct: 683 EAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILI 742

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               R +        ++EM+++G+  +V  Y T+++  A VG   +A+ +FE  K++   
Sbjct: 743 NGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGI 802

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
            PDS +F+++I   S   +  EA  +F E    G   N+    SL+    K +
Sbjct: 803 -PDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNVKTCISLLDALNKTE 854



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 89/188 (47%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VILY+  +  F K   +D+A  + ++M+ +G+ P+  T+++L+         ++A+  F+
Sbjct: 665 VILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQ 724

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M    C P+  TYS +I+   R      AF  +   + +    +   ++T+I      G
Sbjct: 725 SMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVG 784

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N     +++E  K  G  P+  ++N L++ M  A RP +   +++E    G   N  T  
Sbjct: 785 NITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNVKTCI 844

Query: 345 SLLRAYGR 352
           SLL A  +
Sbjct: 845 SLLDALNK 852



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 84/214 (39%), Gaps = 38/214 (17%)

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
           + P+A++ ++     + +      V EEM  +G          L+ T+ R++R      +
Sbjct: 106 LPPDAYNAVLPF--LSHDLAALEKVLEEMSHLGYGLPNPACAALVATLVRSRRLEDAFRV 163

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
              M      P ++ Y  L+ A   AR  E  L + R+M++ G ++SV L+ TL+   A 
Sbjct: 164 IGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAR 223

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
                                                G++  A A+ +E+  +  EP++ 
Sbjct: 224 ------------------------------------EGQMEPALALVDEVKGSCLEPDIV 247

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +    I C+GKA   D   +  + L   G+ PDD
Sbjct: 248 LYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDD 281



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 61/113 (53%), Gaps = 2/113 (1%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLP 216
           ++K S     Y++ +    + +  +KA   + +M  +G+ P+ VT++T+IS  A++ N+ 
Sbjct: 728 EMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNIT 787

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
           + A   FER  + G  PD+ +++++I+    A     A+ +++  R    R++
Sbjct: 788 D-AYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLN 839


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 170/322 (52%), Gaps = 5/322 (1%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           ++ +V+ Y+  +  +    +L KA +L DDM  +G+KP+  T++++I          +A 
Sbjct: 289 STPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAE 348

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           +    M S    PD + Y+++I  + + G+V  A   +D   ++K   D   ++TLI+ +
Sbjct: 349 KVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGF 408

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           G  G      N++ EM + G+KP+ +TY  L+D   +A       +++ EM   G++PN 
Sbjct: 409 GQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNI 468

Query: 341 NTYASLLRAYGRARYGE-DTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
            TY +L+   G  ++GE DT + +  EM++KG+QL+V +YN+++      G  ++A ++ 
Sbjct: 469 VTYGALID--GLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLM 526

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           ++M+ +    PD+ T++++I      G + +A  +  EML+ G +P +     L+  +  
Sbjct: 527 KEMEVA-GIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCM 585

Query: 459 AQRTDDVVRALNRLPELGITPD 480
               +D  R L  + E GI PD
Sbjct: 586 LGMLEDGDRLLGWMLEKGIVPD 607



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 181/415 (43%), Gaps = 22/415 (5%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  + +  K     +AE++  +M+ + + PDNV ++TLI           A +WF+ M 
Sbjct: 331 YNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEML 390

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S    PD +TY+++I  +G+ G V     L+    +   + D   ++TLI +Y  AG   
Sbjct: 391 SKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMV 450

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              +++ EM  +G+ PN++TY  L+D + +         +  EM   GL  N   Y S++
Sbjct: 451 NAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMV 510

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +A   E  + + +EM+  G+      Y T++     +G  D+A ++ ++M      
Sbjct: 511 NGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEM-LDRGL 569

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           QP   TF+ ++      G + + + +   MLE G  P+     +L++ +      +   +
Sbjct: 570 QPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTK 629

Query: 468 ALNRLPELGITPDDRFCGCLL--NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQD 525
              R+   G+ PD      L+  +   +  KE      E +EK     GYV  +      
Sbjct: 630 IYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEK-----GYVPTVTSYNAL 684

Query: 526 IEGDFKK----EATELFNSISKDVKKA---YCNCLIDLC-------VNLNLLENA 566
           I+  +KK    EA ELF  +      A     N  +D+C       + LNL + A
Sbjct: 685 IKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEA 739



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 153/322 (47%), Gaps = 3/322 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S + I Y   ++ F +   + + + LF +M+ RG+KPD VT++TLI           A
Sbjct: 393 KISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNA 452

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
                 M   G  P+ +TY ++ID   + G ++ A  L D  R +  +++   +++++  
Sbjct: 453 FSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNG 512

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
              AGN +  + + +EM+  G+ P+ ITY  ++D   R     +   + +EM D GL P 
Sbjct: 513 ICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPT 572

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             T+  L+  +      ED   +   M EKG+      YNTL+         +   +I++
Sbjct: 573 VVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYK 632

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
            M+ ++   PDS T++ +I    C+ + + EA  ++ EM+E G+ P +    +LI+ + K
Sbjct: 633 RMR-NQGVAPDSNTYNILIK-GHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYK 690

Query: 459 AQRTDDVVRALNRLPELGITPD 480
            ++  +       +   G+  D
Sbjct: 691 KKKILEARELFEEMRGHGLVAD 712



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 90/180 (50%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I Y   +  + +  D+DKA +L  +MLDRG++P  VTF+ L++   M  +        
Sbjct: 537 DAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLL 596

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  PDA+TY++++  +    ++     +Y R RN+    D N ++ LIK +  A
Sbjct: 597 GWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKA 656

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            N      +Y+EM   G  P + +YN L+    + K+  + + +++EM  +GL  +   Y
Sbjct: 657 RNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIY 716



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 77/149 (51%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ +NV M  F     L+  +RL   ML++G+ PD +T++TL+    + N  N   + ++
Sbjct: 573 VVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYK 632

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           RM + G  PD+ TY+ +I  + +A N++ A+ LY     + +     +++ LIK +    
Sbjct: 633 RMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKK 692

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
                  ++EEM+  G+  +   YN  +D
Sbjct: 693 KILEARELFEEMRGHGLVADGEIYNFFVD 721



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/300 (20%), Positives = 135/300 (45%), Gaps = 15/300 (5%)

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
           NAF + I     A N +G     +     G+  N  +YN ++ ++ R  +  +   +  +
Sbjct: 229 NAFLSRI-----ANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQ 283

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           M     +P+  +Y++++  Y      +  L +  +M+ KG++ +   YN+++ +   +G 
Sbjct: 284 MDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGK 343

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
           + EA ++  +M  S+   PD+  ++++I      G V  A   F+EML     P+    T
Sbjct: 344 SFEAEKVLREM-MSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYT 402

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 510
           +LIQ +G+  +  +     + +   G+ PD+     L++V  +      G++V      N
Sbjct: 403 TLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKA-----GEMVNAFSLHN 457

Query: 511 S--KLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 568
              ++G    ++     I+G  K    +  N +  +++K      +++C+  +++   CK
Sbjct: 458 EMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKK--GLQLNVCIYNSMVNGICK 515


>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 160/330 (48%), Gaps = 1/330 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   + ++  C  ++  +  F+ ML  G+KP+ V+++ LI     + +  +A   F
Sbjct: 338 DVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVF 397

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             +   G  PD ++Y+S+++AYG++G  E A  +++  R    + +  +++ LI  YG+ 
Sbjct: 398 NEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSK 457

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     + +  EM+  GV+PN+++   LL   GR  +  ++K++       G+  N   Y
Sbjct: 458 GLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAY 517

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S + +Y      +  LS+YR M+ K ++     YN L++ C  +    EA    ++M  
Sbjct: 518 NSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMD 577

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +        +SS+I   S +G+V+EAE+MF +M   G  P++   T++I  Y  A+  +
Sbjct: 578 LK-IPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWE 636

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
                   +    + PD   C  L+    +
Sbjct: 637 KASALFLEMETDDVQPDSIACSSLMRAFNK 666



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 154/331 (46%), Gaps = 8/331 (2%)

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FST 275
           +   W +   ++    D   Y+ MI  + R   V+ A GL+     +KWR  P+A  ++ 
Sbjct: 147 QVFRWMKNQKNYCARND--IYNMMIRLHARHNIVDQARGLFFEM--QKWRCKPDAETYNA 202

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LI  +G AG +   +N+ ++M    + P+  TYNNL++  G +    +   + K+MT+NG
Sbjct: 203 LINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENG 262

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           + P+  T+  +L AY R       LS +  MK   ++   T  N ++     +G   +A 
Sbjct: 263 VGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAI 322

Query: 396 EIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           +IF  MK   + C PD  TF+++I + S  G++   +  FN ML  G +PN+    +LI 
Sbjct: 323 DIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIG 382

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 513
            Y       +     N + + G  PD      LLN   ++ K E+  K+ E + +++ K 
Sbjct: 383 AYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKP 442

Query: 514 GYVVKLLLEEQDIEGDFKKEATELFNSISKD 544
             V    L +         EA E+ + + ++
Sbjct: 443 NLVSYNALIDAYGSKGLLTEAVEILHEMERN 473



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 155/354 (43%), Gaps = 38/354 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ +N+ +  +++     K    F+ M    ++PD  T + +I C        KA++ F
Sbjct: 266 DLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIF 325

Query: 224 ERMPS--FGCDPDALTYSSMIDAYGRAGNVE----------------------------- 252
             M      C PD +T++++I  Y   G +E                             
Sbjct: 326 NSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYA 385

Query: 253 ------MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
                  AF +++  +   +  D  ++++L+  YG +G  +  + V+E M+    KPN++
Sbjct: 386 SHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLV 445

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           +YN L+D  G      +   I  EM  NG+ PN  +  +LL A GR        SV    
Sbjct: 446 SYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAA 505

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           + +G++L+ T YN+ +     VG  D+A  ++  M+ ++  +PD  T++ +I+ C    K
Sbjct: 506 ELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMR-TKKVKPDPVTYNVLISGCCKMSK 564

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             EA    +EM++     +  V +S+I  Y K  +  +      ++  +G  PD
Sbjct: 565 YGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPD 618



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 153/346 (44%), Gaps = 3/346 (0%)

Query: 134 DCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           + +I L+   N    A  L +   K +   +   YN  +    +      A  + DDML 
Sbjct: 166 NMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLR 225

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
             + P   T++ LI+    +    +A+   ++M   G  PD +T++ ++ AY R      
Sbjct: 226 AAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSK 285

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK--PNMITYNNL 311
               ++  +    R D    + +I      G     ++++  MK    +  P+++T+  +
Sbjct: 286 VLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTI 345

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +       +    +T +  M   GL PN  +Y +L+ AY      ++  SV+ E+K+ G 
Sbjct: 346 IHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGF 405

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
              V  Y +LL      G  ++A ++FE M+ + +C+P+  +++++I     +G ++EA 
Sbjct: 406 HPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRN-HCKPNLVSYNALIDAYGSKGLLTEAV 464

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
            + +EM   G +PN+  + +L+   G+  +   +   L+     GI
Sbjct: 465 EILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGI 510



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 134/286 (46%), Gaps = 3/286 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERM 226
           YN  +  +    + DKA  L+  M  + VKPD VT++ LIS C +M+    +A+ + + M
Sbjct: 517 YNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKY-GEALGFLDEM 575

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
                      YSS+I AY + G V  A  ++ + +    R D   ++ +I  Y  A N+
Sbjct: 576 MDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENW 635

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           +    ++ EM+   V+P+ I  ++L+    +  +P +V  + + M +  +  N +++  +
Sbjct: 636 EKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEM 695

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + A    R   + + + + M+     +S+ L N LL      G  +   ++F  + +S  
Sbjct: 696 VSACSLLREWREIIGLIKLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIVAS-G 754

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
            + + +T+S ++      G   +   +   M EAG +P++ +  S+
Sbjct: 755 AEINFYTYSILLKNLLAAGNWRKYIEVLQWMEEAGLQPSVGMYRSI 800



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/286 (19%), Positives = 125/286 (43%), Gaps = 1/286 (0%)

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           RG+K +   +++ I         +KA+  +  M +    PD +TY+ +I    +      
Sbjct: 508 RGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGE 567

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A G  D   + K  +    +S++I  Y   G      +++ +MK +G +P++ITY  ++ 
Sbjct: 568 ALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIH 627

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
               A+   +   ++ EM  + + P+    +SL+RA+ +       L +   M+EK +  
Sbjct: 628 AYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPF 687

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           + + +  +++ C+ +    E   + + M+ S +        + ++      GK+     +
Sbjct: 688 NNSSFFEMVSACSLLREWREIIGLIKLMEPSISVVSIG-LLNQLLHFLGKSGKIETMMKL 746

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           F +++ +G E N +  + L++    A      +  L  + E G+ P
Sbjct: 747 FYKIVASGAEINFYTYSILLKNLLAAGNWRKYIEVLQWMEEAGLQP 792



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 117/293 (39%), Gaps = 35/293 (11%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL+L       K   + + YNV +    K     +A    D+M+D  +      +S++I 
Sbjct: 533 ALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVIC 592

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    +A   F +M   GC PD +TY++MI AY  A N E A  L+     +  + 
Sbjct: 593 AYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQP 652

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY-------------------- 308
           D  A S+L++ +   G     L + E M+   +  N  ++                    
Sbjct: 653 DSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEMVSACSLLREWREIIGLI 712

Query: 309 ---------------NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
                          N LL  +G++ +   +  ++ ++  +G   N+ TY+ LL+    A
Sbjct: 713 KLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIVASGAEINFYTYSILLKNLLAA 772

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
                 + V + M+E G+Q SV +Y ++ +   +    + A  I E +   +N
Sbjct: 773 GNWRKYIEVLQWMEEAGLQPSVGMYRSISSFAQNRSGAEYAAVIQERIGMPDN 825


>gi|297805706|ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316573|gb|EFH46996.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 680

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 166/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + V+ K +   +A  L  +M + GV P+ V++STL+S    N+   +A+  F
Sbjct: 261 DLVAYNSMINVYGKAKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLEALSVF 320

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+   V+ A  L+   R  K  I+PN  +++T++++YG
Sbjct: 321 AEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSLR--KMDIEPNVVSYNTILRVYG 378

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN ++   G+     +   + +EM   G+ PN  
Sbjct: 379 EAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAI 438

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+A   +   +++++++  G+++   LY T++     VG    A  +  ++
Sbjct: 439 TYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHEL 498

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K      PD+    + ITI +  G   EA  +F +  E+G   ++ V   +I  Y + QR
Sbjct: 499 K-----LPDNIPRETAITILAKAGSTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQR 553

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +V+    ++   G  PD      +LN
Sbjct: 554 YVNVIEVFEKMRTAGYFPDSNAIAMVLN 581



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 182/408 (44%), Gaps = 43/408 (10%)

Query: 107 ADLDSCSAT------EDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALT-YFTNKL 159
            D+D   A+      E ++FS+L    D  L    ++ L +  N    +LAL  +   + 
Sbjct: 92  VDMDELLASIHQTQNEKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEA 151

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K +  V  YNV ++   + +    A  LFD+M  R + PD  T+STLI+      + + A
Sbjct: 152 KYTPSVFAYNVVLRNVLRAKQFGIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSA 211

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           + W ++M       D + YS++I+   R  +   A  ++ R +      D  A++++I +
Sbjct: 212 LSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINV 271

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG---- 335
           YG A  F     + +EM   GV PN ++Y+ LL       +  +  +++ EM +      
Sbjct: 272 YGKAKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCPLD 331

Query: 336 -------------------------------LSPNWNTYASLLRAYGRARYGEDTLSVYR 364
                                          + PN  +Y ++LR YG A    + + ++R
Sbjct: 332 LTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFR 391

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
            M+ K ++ +V  YNT++ +       ++A  + ++M+ S   +P++ T+S++I+I    
Sbjct: 392 LMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQ-SRGIEPNAITYSTIISIWGKA 450

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           GK+  A  +F ++  +G E +  +  ++I  Y +        R L+ L
Sbjct: 451 GKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHEL 498



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 31/218 (14%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  +K++ K  + +KA  L  +M  RG++P+ +T+ST+IS
Sbjct: 386 AIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIIS 445

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR--------------------- 247
                   ++A   F+++ S G + D + Y +MI AY R                     
Sbjct: 446 IWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIP 505

Query: 248 ----------AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
                     AG+ E A  ++ +A       D + F  +I LY     +   + V+E+M+
Sbjct: 506 RETAITILAKAGSTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMR 565

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
             G  P+      +L+  G+ +   +  T+Y+EM + G
Sbjct: 566 TAGYFPDSNAIAMVLNAYGKQREFEKADTVYREMQEEG 603



 Score = 40.4 bits (93), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 79/207 (38%), Gaps = 39/207 (18%)

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV------ 427
           SV  YN +L           A  +F++M+      PD +T+S++IT     G        
Sbjct: 156 SVFAYNVVLRNVLRAKQFGIAHGLFDEMRQ-RALAPDRYTYSTLITSFGKEGMFDSALSW 214

Query: 428 -----------------------------SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
                                        S+A ++F+ +  +G  P+L    S+I  YGK
Sbjct: 215 LQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGK 274

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYV 516
           A+   +    +  + E G++P+      LL+V  +  K  E L    E  E  N  L   
Sbjct: 275 AKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLEALSVFAEMKE-VNCPLDLT 333

Query: 517 VKLLLEEQDIEGDFKKEATELFNSISK 543
              ++ +   + D  KEA  LF S+ K
Sbjct: 334 TCNIMIDVYGQLDMVKEADRLFWSLRK 360


>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 160/330 (48%), Gaps = 1/330 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   + ++  C  ++  +  F+ ML  G+KP+ V+++ LI     + +  +A   F
Sbjct: 338 DVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVF 397

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             +   G  PD ++Y+S+++AYG++G  E A  +++  R    + +  +++ LI  YG+ 
Sbjct: 398 NEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSK 457

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     + +  EM+  GV+PN+++   LL   GR  +  ++K++       G+  N   Y
Sbjct: 458 GLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAY 517

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S + +Y      +  LS+YR M+ K ++     YN L++ C  +    EA    ++M  
Sbjct: 518 NSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMD 577

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +        +SS+I   S +G+V+EAE+MF +M   G  P++   T++I  Y  A+  +
Sbjct: 578 LK-IPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWE 636

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
                   +    + PD   C  L+    +
Sbjct: 637 KASALFLEMETDDVQPDSIACSSLMRAFNK 666



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 154/331 (46%), Gaps = 8/331 (2%)

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FST 275
           +   W +   ++    D   Y+ MI  + R   V+ A GL+     +KWR  P+A  ++ 
Sbjct: 147 QVFRWMKNQKNYCARND--IYNMMIRLHARHNIVDQARGLFFEM--QKWRCKPDAETYNA 202

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LI  +G AG +   +N+ ++M    + P+  TYNNL++  G +    +   + K+MT+NG
Sbjct: 203 LINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENG 262

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           + P+  T+  +L AY R       LS +  MK   ++   T  N ++     +G   +A 
Sbjct: 263 VGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAI 322

Query: 396 EIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           +IF  MK   + C PD  TF+++I + S  G++   +  FN ML  G +PN+    +LI 
Sbjct: 323 DIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIG 382

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 513
            Y       +     N + + G  PD      LLN   ++ K E+  K+ E + +++ K 
Sbjct: 383 AYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKP 442

Query: 514 GYVVKLLLEEQDIEGDFKKEATELFNSISKD 544
             V    L +         EA E+ + + ++
Sbjct: 443 NLVSYNALIDAYGSKGLLTEAVEILHEMERN 473



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 155/354 (43%), Gaps = 38/354 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ +N+ +  +++     K    F+ M    ++PD  T + +I C        KA++ F
Sbjct: 266 DLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIF 325

Query: 224 ERMPS--FGCDPDALTYSSMIDAYGRAGNVE----------------------------- 252
             M      C PD +T++++I  Y   G +E                             
Sbjct: 326 NSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYA 385

Query: 253 ------MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
                  AF +++  +   +  D  ++++L+  YG +G  +  + V+E M+    KPN++
Sbjct: 386 SHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLV 445

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           +YN L+D  G      +   I  EM  NG+ PN  +  +LL A GR        SV    
Sbjct: 446 SYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAA 505

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           + +G++L+ T YN+ +     VG  D+A  ++  M++ +  +PD  T++ +I+ C    K
Sbjct: 506 ELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKK-VKPDPVTYNVLISGCCKMSK 564

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             EA    +EM++     +  V +S+I  Y K  +  +      ++  +G  PD
Sbjct: 565 YGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPD 618



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 153/346 (44%), Gaps = 3/346 (0%)

Query: 134 DCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           + +I L+   N    A  L +   K +   +   YN  +    +      A  + DDML 
Sbjct: 166 NMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLR 225

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
             + P   T++ LI+    +    +A+   ++M   G  PD +T++ ++ AY R      
Sbjct: 226 AAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSK 285

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK--PNMITYNNL 311
               ++  +    R D    + +I      G     ++++  MK    +  P+++T+  +
Sbjct: 286 VLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTI 345

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +       +    +T +  M   GL PN  +Y +L+ AY      ++  SV+ E+K+ G 
Sbjct: 346 IHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGF 405

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
              V  Y +LL      G  ++A ++FE M+ + +C+P+  +++++I     +G ++EA 
Sbjct: 406 HPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRN-HCKPNLVSYNALIDAYGSKGLLTEAV 464

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
            + +EM   G +PN+  + +L+   G+  +   +   L+     GI
Sbjct: 465 EILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGI 510



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 134/286 (46%), Gaps = 3/286 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERM 226
           YN  +  +    + DKA  L+  M  + VKPD VT++ LIS C +M+    +A+ + + M
Sbjct: 517 YNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKY-GEALGFLDEM 575

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
                      YSS+I AY + G V  A  ++ + +    R D   ++ +I  Y  A N+
Sbjct: 576 MDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENW 635

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           +    ++ EM+   V+P+ I  ++L+    +  +P +V  + + M +  +  N +++  +
Sbjct: 636 EKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEM 695

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + A    R   + + + + M+     +S+ L N LL      G  +   ++F  + +S  
Sbjct: 696 VSACSLLREWREIIGLIKLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIVAS-G 754

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
            + + +T+S ++      G   +   +   M EAG +P++ +  S+
Sbjct: 755 AEINFYTYSILLKNLLAAGNWRKYIEVLQWMEEAGLQPSVGMYRSI 800



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/286 (19%), Positives = 125/286 (43%), Gaps = 1/286 (0%)

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           RG+K +   +++ I         +KA+  +  M +    PD +TY+ +I    +      
Sbjct: 508 RGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGE 567

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A G  D   + K  +    +S++I  Y   G      +++ +MK +G +P++ITY  ++ 
Sbjct: 568 ALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIH 627

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
               A+   +   ++ EM  + + P+    +SL+RA+ +       L +   M+EK +  
Sbjct: 628 AYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPF 687

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           + + +  +++ C+ +    E   + + M+ S +        + ++      GK+     +
Sbjct: 688 NNSSFFEMVSACSLLREWREIIGLIKLMEPSISVVSIG-LLNQLLHFLGKSGKIETMMKL 746

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           F +++ +G E N +  + L++    A      +  L  + E G+ P
Sbjct: 747 FYKIVASGAEINFYTYSILLKNLLAAGNWRKYIEVLQWMEEAGLQP 792



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 117/290 (40%), Gaps = 35/290 (12%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL+L       K   + + YNV +    K     +A    D+M+D  +      +S++I 
Sbjct: 533 ALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVIC 592

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    +A   F +M   GC PD +TY++MI AY  A N E A  L+     +  + 
Sbjct: 593 AYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQP 652

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY-------------------- 308
           D  A S+L++ +   G     L + E M+   +  N  ++                    
Sbjct: 653 DSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEMVSACSLLREWREIIGLI 712

Query: 309 ---------------NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
                          N LL  +G++ +   +  ++ ++  +G   N+ TY+ LL+    A
Sbjct: 713 KLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIVASGAEINFYTYSILLKNLLAA 772

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
                 + V + M+E G+Q SV +Y ++ +   +    + A  I E ++S
Sbjct: 773 GNWRKYIEVLQWMEEAGLQPSVGMYRSISSFAQNRSGAEYAAVIQERIES 822


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 166/332 (50%), Gaps = 5/332 (1%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           + S  V  YN+ ++ F    +LD A R FD M  +G  P+ VT++TLI         +  
Sbjct: 200 QVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDG 259

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIK 278
            E    M   G +P+ ++Y+ +I+   R G + E++F L +  +   + +D   ++TLIK
Sbjct: 260 FELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNK-RGYSLDEVTYNTLIK 318

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            Y   GNF   L ++ EM   G+ P++ITY +L+ +M +A    +      +M   GL P
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCP 378

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N  TY +L+  + +  Y  +   V +EM + G   SV  YN L+      G   +A  + 
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVL 438

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           EDMK  +   PD  ++S++++   CR   V EA  +  +M+  G +P+    +SLIQ + 
Sbjct: 439 EDMK-EKGLTPDVVSYSTVLS-GFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFC 496

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + +RT +     + +  +G+ PD+     L+N
Sbjct: 497 EQRRTKEACDLFDEMLRVGLPPDEFTYTALIN 528



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 153/317 (48%), Gaps = 6/317 (1%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFER 225
           ++++ +K + +   +DKA  +       G  P  ++++ ++ +  R     + A   F+ 
Sbjct: 136 VFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKE 195

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTA 283
           M      P+  TY+ +I  +  AGN+++A   +DR   EK    PN   ++TLI  Y   
Sbjct: 196 MLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRM--EKKGCLPNVVTYNTLIDGYCKL 253

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D    +   M   G++PN+I+YN +++ + R  R  ++  +  EM   G S +  TY
Sbjct: 254 RKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTY 313

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L++ Y +       L ++ EM   G+  SV  Y +L+      G  + A E  + M+ 
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRV 373

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
              C P+  T+++++   S +G ++EA  +  EM++ GF P++    +LI  +  A +  
Sbjct: 374 RGLC-PNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMV 432

Query: 464 DVVRALNRLPELGITPD 480
           D +  L  + E G+TPD
Sbjct: 433 DAIAVLEDMKEKGLTPD 449



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 175/372 (47%), Gaps = 45/372 (12%)

Query: 117 DDVFSVLRCLGDDFLEQDCV---IILNNMTNP---DTAALALTYFTNKLKASKEVILYNV 170
           DD F +LR +    LE + +   +++N +         +  LT   NK   S + + YN 
Sbjct: 257 DDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEM-NKRGYSLDEVTYNT 315

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSF 229
            +K + K  +  +A  +  +ML  G+ P  +T+++LI S  +  N+ N+A E+ ++M   
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNM-NRATEFLDQMRVR 374

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
           G  P+  TY++++D + + G +           NE +R                      
Sbjct: 375 GLCPNERTYTTLVDGFSQKGYM-----------NEAYR---------------------- 401

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
             V +EM   G  P+++TYN L++    A +      + ++M + GL+P+  +Y+++L  
Sbjct: 402 --VLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSG 459

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
           + R+   ++ L V R+M  KG++     Y++L+    +   T EA ++F++M       P
Sbjct: 460 FCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRV-GLPP 518

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           D +T++++I      G + +A  + NEM+E G  P++   + LI    K  RT +  R L
Sbjct: 519 DEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLL 578

Query: 470 NRLPELGITPDD 481
            +L      P D
Sbjct: 579 LKLFYEESVPSD 590



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 139/299 (46%), Gaps = 16/299 (5%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  VI Y   +    K  ++++A    D M  RG+ P+  T++TL+         N+A  
Sbjct: 342 SPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYR 401

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + M   G  P  +TY+++I+ +  AG +  A  + +  + +    D  ++ST++  + 
Sbjct: 402 VLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFC 461

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            + + D  L V  +M A G+KP+ ITY++L+      +R  +   ++ EM   GL P+  
Sbjct: 462 RSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEF 521

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +L+ AY      +  + ++ EM EKG+   V  Y+ L+        T EA  +   +
Sbjct: 522 TYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKL 581

Query: 402 KSSENCQPDSWTFSSMITICS---------------CRGKVSEAEAMFNEMLEAGFEPN 445
              E+  P   T+ ++I  CS                +G ++EA+ +F  MLE   +P+
Sbjct: 582 FYEESV-PSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPD 639



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 110/259 (42%), Gaps = 37/259 (14%)

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYK 329
           + F  ++K Y      D  L++    +A G  P +++YN +LD   R+KR     + ++K
Sbjct: 135 SVFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFK 194

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           EM  + +SPN  TY  L+R +  A   +  L  +  M++KG   +V  YNTL+     + 
Sbjct: 195 EMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLR 254

Query: 390 YTDEAFEIFEDMKSSENCQP-----------------------------------DSWTF 414
             D+ FE+   M + +  +P                                   D  T+
Sbjct: 255 KIDDGFELLRSM-ALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTY 313

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +++I      G   +A  M  EML  G  P++   TSLI    KA   +     L+++  
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRV 373

Query: 475 LGITPDDRFCGCLLNVMTQ 493
            G+ P++R    L++  +Q
Sbjct: 374 RGLCPNERTYTTLVDGFSQ 392



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCAR----------- 211
           +V+ Y+V +    K     +A+RL   +      P +VT+ TLI +C+            
Sbjct: 554 DVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIK 613

Query: 212 ---MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
              M  +  +A + FE M      PD   Y+ MI  + R G++  A+ LY       + +
Sbjct: 614 GFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLL 673

Query: 269 DPNAFSTLIKLYGTAGNFD 287
                  L+K     G  +
Sbjct: 674 HTVTVIALVKTLHKEGKVN 692


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 154/307 (50%), Gaps = 5/307 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +N  +  + KC +LD+ E+L ++M   G K D VT++ LI+C         A  +F
Sbjct: 222 DVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYF 281

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G   + +T+S+ +DA+ + G V  A  L+ + R     ++   ++ LI     A
Sbjct: 282 AAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKA 341

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D  + + +EM   GV  N++TY  L+D + + ++  + + + + M   G+  N   Y
Sbjct: 342 GRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLY 401

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+  +   +  E  L +  EMK KG++L ++LY  L+    +V   DEA  +   M  
Sbjct: 402 TTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDE 461

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG----KA 459
           S   +P+   +++M+  C   GKV EA AM  ++L++GF+PN   L   +Q +     K 
Sbjct: 462 S-GLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKG 520

Query: 460 QRTDDVV 466
              D VV
Sbjct: 521 MSLDKVV 527



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 185/426 (43%), Gaps = 57/426 (13%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D++ RL   + ++   P+  TF+ +I          +A   F RM   GC PD +T++S+
Sbjct: 170 DRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSL 229

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           ID YG+ G ++    L +  R    + D   ++ LI  +   G  +     +  MK  GV
Sbjct: 230 IDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGV 289

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
             N++T++  +D   +     +   ++ +M   G++ N  TY  L+    +A   +D + 
Sbjct: 290 MANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIV 349

Query: 362 VYREMKEKGMQLSVTLYNTL----------------LAMCADVG-------YT------- 391
           +  EM  +G+ L+V  Y  L                L M    G       YT       
Sbjct: 350 LLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHF 409

Query: 392 -----DEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPN 445
                ++A  +  +MK ++  + D   + ++I  +C+   K+ EA+++  +M E+G EPN
Sbjct: 410 MNKNSEKALGLLSEMK-NKGLELDISLYGALIQGLCNVH-KLDEAKSLLTKMDESGLEPN 467

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 505
             + T+++    K+ +  + +  L ++ + G  P++   GCL         E +    E 
Sbjct: 468 YIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNN---GCL--------NEAVQLFNEM 516

Query: 506 VEKSNS--KLGYVVKL--LLEEQDIEGDFKKEATELFNSISKDVKKAYC-NCLIDLCVNL 560
           V K  S  K+ Y   L   L++ ++   F  +A  + + +  D+   +C  C I    NL
Sbjct: 517 VHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDL---FCYTCFISGFCNL 573

Query: 561 NLLENA 566
           N++  A
Sbjct: 574 NMMPEA 579



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 111/265 (41%), Gaps = 23/265 (8%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K   LD A  L D+M+ +GV  + VT++ L+          +A +    M   G   + L
Sbjct: 340 KAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANEL 399

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            Y+++I  +    N E A GL    +N+   +D + +  LI+        D   ++  +M
Sbjct: 400 LYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKM 459

Query: 297 KAIGVKPNMITYNNLLDTMGRA-KRPWQVKTIYK---------------------EMTDN 334
              G++PN I Y  ++D   ++ K P  +  + K                     EM   
Sbjct: 460 DESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHK 519

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G+S +   Y +LL  Y +     D  ++  +M + G+QL +  Y   ++   ++    EA
Sbjct: 520 GMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEA 579

Query: 395 FEIFEDMKSSENCQPDSWTFSSMIT 419
            E+F +M       PD   ++ +IT
Sbjct: 580 REVFSEM-IGHGIAPDRAVYNCLIT 603



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 113/299 (37%), Gaps = 47/299 (15%)

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL-----DTMGRAKRPW------- 322
           TL+ +    G  D  +     ++ + V PN  T N++L     D  GR  R         
Sbjct: 127 TLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLPAP 186

Query: 323 -------------------QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
                              + ++++  M + G  P+  T+ SL+  YG+    ++   + 
Sbjct: 187 NVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLV 246

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
            EM+  G +  V  YN L+      G  + A+  F  MK  E    +  TFS+ +     
Sbjct: 247 EEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMK-REGVMANVVTFSTFVDAFCK 305

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
            G V EA  +F +M   G   N F  T LI    KA R DD +  L+ +   G+      
Sbjct: 306 EGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVP----- 360

Query: 484 CGCLLNVMTQTP------KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536
               LNV+T T       KE      E V +   K G     LL    I G F  + +E
Sbjct: 361 ----LNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSE 415



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 75/171 (43%), Gaps = 22/171 (12%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLP------ 216
           ++ LY   ++       LD+A+ L   M + G++P+ + ++T++ +C +   +P      
Sbjct: 432 DISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAML 491

Query: 217 ---------------NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
                          N+AV+ F  M   G   D + Y++++D Y + GN+  AF L  + 
Sbjct: 492 QKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKM 551

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            +   ++D   ++  I  +           V+ EM   G+ P+   YN L+
Sbjct: 552 IDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLI 602


>gi|255661192|gb|ACU25765.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 426

 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 186/366 (50%), Gaps = 22/366 (6%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L ++M   GV PD V+++TL+
Sbjct: 63  AISIFS-RLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLL 121

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 122 TMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KIG 179

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++   
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAY 299

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG   +
Sbjct: 300 ERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAAAGRJEEATWVFRQAIDAGEVKD 354

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 505
           + V   LI  + K ++  +VV   +++ E    PD      +LN          GKL E 
Sbjct: 355 ITVFERLIHLFSKYKKYXNVVEVFDKMRERRYFPDSNVIALVLNA--------YGKLHE- 405

Query: 506 VEKSNS 511
            EK+NS
Sbjct: 406 FEKANS 411



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 150/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y+SMI+ +G+A     A  L +  R      D  +++TL+ ++     F 
Sbjct: 72  RSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVENKRFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 137/287 (47%), Gaps = 1/287 (0%)

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +   
Sbjct: 3   RALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSK 62

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  ++ R +   +  D  A++++I ++G A  F    ++  EM+  GV P+ ++Y  LL 
Sbjct: 63  AISIFSRLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLT 122

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
                KR  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++ 
Sbjct: 123 MHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEP 182

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  +
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRNSGVEID 288



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 4/226 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ + G + D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  L+    + K+   V  ++
Sbjct: 319 DNIPRDTAIHILAAAGRJEEATWVFRQAIDAGEVKDITVFERLIHLFSKYKKYXNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
            +M +    P+ N  A +L AYG+    E   SVY EM+++G   S
Sbjct: 379 DKMRERRYFPDSNVIALVLNAYGKLHEFEKANSVYMEMQDEGCXFS 424



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 1/159 (0%)

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
            LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    +A
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
             IF  +K S    PD   ++SMI +        EA ++ NEM  AG  P+    T+L+ 
Sbjct: 64  ISIFSRLKRS-GFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLT 122

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
            + + +R  + +     + E+    D   C  +++V  Q
Sbjct: 123 MHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 155/312 (49%), Gaps = 1/312 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + ++   + R +D A  +F +M D G  PD +T++ LI         +KA E + +M 
Sbjct: 273 YTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMR 332

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           +    PD +TY +++D +G+ G++E     ++    + +  D   ++ LI+    +G+ D
Sbjct: 333 ASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVD 392

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              ++ + M   G+ PN+ TYN ++  + +A+R  +   + + M   G+ P   +Y   +
Sbjct: 393 RAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFI 452

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YG++      +  +  MK++G+  S+   N  L   A+ G   EA +IF D+      
Sbjct: 453 DYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKC-GL 511

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PDS T++ ++   S  G++ +A  + +EM+  G EP++ ++ SLI    KA R D   +
Sbjct: 512 SPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWK 571

Query: 468 ALNRLPELGITP 479
              RL  L + P
Sbjct: 572 MFGRLKNLKLAP 583



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 150/326 (46%), Gaps = 1/326 (0%)

Query: 155  FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
            FT  L     +  YN  M         +KA  LF+DM   G  P+N T++ L+     + 
Sbjct: 786  FTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSK 845

Query: 215  LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
              NK  + +  M S GC+P+A+T++ +I A  ++ N+  A  LY    +  +   P  + 
Sbjct: 846  RINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYG 905

Query: 275  TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
             LI     AG  +  + ++EEM   G  PN + YN L++  G++        ++K+M   
Sbjct: 906  PLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKE 965

Query: 335  GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
            G+ P+  +Y  L+         ++ +  + E+K  G+      YN ++         DEA
Sbjct: 966  GIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEA 1025

Query: 395  FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
              +F +MK +    PD +T++++I      GKV  A  M+ E+   G EP++F   +LI+
Sbjct: 1026 LSLFSEMK-NRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIR 1084

Query: 455  CYGKAQRTDDVVRALNRLPELGITPD 480
             +  +   D       ++  +G +P+
Sbjct: 1085 GHSLSGNKDQAFSVFKKMMVVGCSPN 1110



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 138/252 (54%), Gaps = 1/252 (0%)

Query: 166  ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
            I +N+ +    K  +L+KA  L+ +++     P   T+  LI          +A++ FE 
Sbjct: 867  ITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEE 926

Query: 226  MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
            M  +GC P+++ Y+ +I+ +G++G ++ A  L+ +   E  R D  +++ L++     G 
Sbjct: 927  MLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGR 986

Query: 286  FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
             D  +  +EE+K  G+ P+ ++YN +++ +G+++R  +  +++ EM + G+SP+  TY +
Sbjct: 987  IDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNA 1046

Query: 346  LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
            L+   G A   +  + +Y E++  G++ SV  YN L+   +  G  D+AF +F+ M    
Sbjct: 1047 LILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVV- 1105

Query: 406  NCQPDSWTFSSM 417
             C P++ TF+ +
Sbjct: 1106 GCSPNTETFAQL 1117



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 156/311 (50%), Gaps = 6/311 (1%)

Query: 172  MKVFRKCRDLDKAERLFDDML-DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
            +KV  K +    A+ +FD    + G+ P   +++ L+     +N   KA+E FE M S G
Sbjct: 767  IKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAG 826

Query: 231  CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDG 288
              P+  TY+ ++DA+G++  +   + LY   R+     +PNA +   +I     + N + 
Sbjct: 827  THPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGC--EPNAITHNIIISALVKSNNLNK 884

Query: 289  CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
             L++Y E+ +    P   TY  L+D + +A R  Q   I++EM D G  PN   Y  L+ 
Sbjct: 885  ALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILIN 944

Query: 349  AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
             +G++   +    ++++M ++G++  +  Y  L+      G  DEA + FE++K +    
Sbjct: 945  GFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLT-GLD 1003

Query: 409  PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
            PD+ +++ +I       ++ EA ++F+EM   G  P+L+   +LI   G A + D  V+ 
Sbjct: 1004 PDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKM 1063

Query: 469  LNRLPELGITP 479
               L  +G+ P
Sbjct: 1064 YEELQLVGLEP 1074



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 177/405 (43%), Gaps = 51/405 (12%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           ++A +++  M+  G+KP   T+S L+          K +   E M S G  P+  TY+  
Sbjct: 217 NEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTIC 276

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I A GRA  ++ A+G++    +E    D   ++ LI     AG  D    +Y +M+A   
Sbjct: 277 IRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSH 336

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            P+ +TY  L+D  G+      VK  + EM  +G +P+  TY  L+ A  ++   +    
Sbjct: 337 SPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFD 396

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI--- 418
           +   M  KG+  ++  YNT++         DEA E+ E+M+S    +P ++++   I   
Sbjct: 397 MLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESL-GVKPTAFSYVLFIDYY 455

Query: 419 -----------------------TICSCR---------GKVSEAEAMFNEMLEAGFEPNL 446
                                  +I +C          G++SEAE +FN++ + G  P+ 
Sbjct: 456 GKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDS 515

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE-----LGK 501
                L++CY KA + D   + L+ +   G  PD      L+N + +  + +      G+
Sbjct: 516 VTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGR 575

Query: 502 LVECVEKSNSKLGYVV---KLLLEEQDIEGDFKKEATELFNSISK 543
           L       N KL   V    +LL     EG   K A ELF S+++
Sbjct: 576 L------KNLKLAPTVVTYNILLTGLGKEGKILK-ALELFGSMTE 613



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 153/321 (47%), Gaps = 5/321 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + + Y   M  F K  DL+  +R +++M   G  PD VT++ LI     +   ++A +
Sbjct: 337 SPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFD 396

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKL 279
             + M + G  P+  TY++MI    +A  ++ A  L +    E   + P AFS    I  
Sbjct: 397 MLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENM--ESLGVKPTAFSYVLFIDY 454

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           YG +G+    ++ +E MK  G+ P++   N  L T+    R  + + I+ ++   GLSP+
Sbjct: 455 YGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPD 514

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY  L++ Y +A   +    +  EM  KG +  V + N+L+      G  D A+++F 
Sbjct: 515 SVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFG 574

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
            +K+ +   P   T++ ++T     GK+ +A  +F  M E+G  PN     SL+ C  K 
Sbjct: 575 RLKNLK-LAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKN 633

Query: 460 QRTDDVVRALNRLPELGITPD 480
              D  ++   R+  +   PD
Sbjct: 634 DAVDLALKMFCRMTMMNCNPD 654



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 105/188 (55%)

Query: 166  ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
            ++YN+ +  F K  ++D A  LF  M+  G++PD  +++ L+ C  +    ++AV++FE 
Sbjct: 937  VIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEE 996

Query: 226  MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
            +   G DPD ++Y+ +I+  G++  ++ A  L+   +N     D   ++ LI   G AG 
Sbjct: 997  LKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGK 1056

Query: 286  FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
             D  + +YEE++ +G++P++ TYN L+     +    Q  +++K+M   G SPN  T+A 
Sbjct: 1057 VDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQ 1116

Query: 346  LLRAYGRA 353
            L   Y RA
Sbjct: 1117 LPNKYPRA 1124



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/368 (20%), Positives = 158/368 (42%), Gaps = 39/368 (10%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           LK +  V+ YN+ +    K   + KA  LF  M + G  P+ +TF++L+ C   N+  + 
Sbjct: 579 LKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDL 638

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN--------------- 263
           A++ F RM    C+PD LTY+++I    R G ++ AF  + + +                
Sbjct: 639 ALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKFLSPDYVTLCTLIPG 698

Query: 264 --EKWRIDPNAFSTLIKLYGTA---------GNFDGCLNVYEEMKAIGVKPNMITYNN-- 310
                R++ +A   +++    A         G    C+    E++       ++  N+  
Sbjct: 699 VVRHGRVE-DAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVC 757

Query: 311 --------LLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLS 361
                   L+  + + K+    + ++ + T N G+ P   +Y  L+     + + E  L 
Sbjct: 758 QDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALE 817

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           ++ +MK  G   +   YN LL         ++ ++++ +M+ S  C+P++ T + +I+  
Sbjct: 818 LFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMR-SRGCEPNAITHNIIISAL 876

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
                +++A  ++ E++   F P       LI    KA R++  ++    + + G  P+ 
Sbjct: 877 VKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNS 936

Query: 482 RFCGCLLN 489
                L+N
Sbjct: 937 VIYNILIN 944



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 147/324 (45%), Gaps = 6/324 (1%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N ++    +   + +AE +F+D+   G+ PD+VT++ L+ C       +KA +    M S
Sbjct: 484 NASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMIS 543

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            GC+PD +  +S+I+   +AG V+ A+ ++ R +N K       ++ L+   G  G    
Sbjct: 544 KGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILK 603

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L ++  M   G  PN IT+N+LLD + +         ++  MT    +P+  TY +++ 
Sbjct: 604 ALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTII- 662

Query: 349 AYGRARYGEDTLS--VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
            YG  R G    +   + +MK+      VTL  TL+      G  ++A ++  +      
Sbjct: 663 -YGLIREGRIDYAFWFFHQMKKFLSPDYVTL-CTLIPGVVRHGRVEDAIKVVMEFVHQAC 720

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            Q +S  +  ++       ++ EA +    ++      +  V+  LI+   K ++  D  
Sbjct: 721 LQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQ 780

Query: 467 RALNRLPE-LGITPDDRFCGCLLN 489
              ++  + LGI P      CL++
Sbjct: 781 NVFDKFTKNLGIHPTLESYNCLMD 804



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 60/121 (49%)

Query: 164  EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
            + + YN  +    K R LD+A  LF +M +RG+ PD  T++ LI    +    + AV+ +
Sbjct: 1005 DTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMY 1064

Query: 224  ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            E +   G +P   TY+++I  +  +GN + AF ++ +        +   F+ L   Y  A
Sbjct: 1065 EELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRA 1124

Query: 284  G 284
            G
Sbjct: 1125 G 1125


>gi|224112321|ref|XP_002316152.1| predicted protein [Populus trichocarpa]
 gi|222865192|gb|EEF02323.1| predicted protein [Populus trichocarpa]
          Length = 785

 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 128/546 (23%), Positives = 246/546 (45%), Gaps = 47/546 (8%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
           + +K++ +   YN  +K   K   L+ +   F  + D G K D  T++ L+       LP
Sbjct: 184 DSIKSATQFSAYNRVLKYLAKAEKLEVSFCCFKKVQDSGCKIDTETYNILMKLFLNKGLP 243

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
            KA E +E M +  C  D  TY  MI +  ++G ++ AF L+   +   +R     FS+L
Sbjct: 244 YKAFEIYETMEAAHCSLDVSTYELMIPSLAKSGRLDAAFKLFQEMKERNFRPSLGIFSSL 303

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           +   G AG  +  + VY EM+ +G++P+ I Y +L+++  +A +      ++ EM   G 
Sbjct: 304 VDSMGKAGRLETSMKVYMEMQGLGLRPSAIMYVSLIESYTKAGKLDAALRLWDEMKIAGF 363

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            PN+  Y  ++ ++ ++   +  +S++R+M++ G   + + Y++LL M A  G  D A +
Sbjct: 364 RPNFGLYTLIIESHAKSGKLDIAMSIFRDMEKAGFLPTPSTYSSLLEMHAASGQVDAAMK 423

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           ++  M ++   +P   T+++++T+ + +  V  A  +  EM   GF  ++   + ++  Y
Sbjct: 424 LYNSM-TNAGLRPGLSTYTALLTLLAHKKLVDVAAKILLEMKAMGFSVDVSA-SDVLMVY 481

Query: 457 GKAQRTDDVVRALNRLPELGITPDD-----RFCGCLLNVMTQTPKEELGKLVECVEKSN- 510
            K    D  +R L  +   GI  ++      F  C+ N + ++ K  L   V    K + 
Sbjct: 482 IKDGSVDLSLRWLRFMSSSGIRTNNFIIRQLFESCMKNGLYESAKPLLETYVNSAAKVDL 541

Query: 511 ----SKLGYVVKLLLEEQDIE-----------------GDF-----KKEAT-----ELFN 539
               S L Y+V+   E+ +                   G F     +K+       E F 
Sbjct: 542 ILYTSILAYLVRCQEEQNERHLMAILSATRHKAHAFMCGLFTGPEQRKQPVLSFVREFFQ 601

Query: 540 SISKDVK----KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHL 594
            I  +++    K + N L++  V +  +  A  + ++    +++   I       WSL +
Sbjct: 602 GIDYELEEGAAKYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDV 661

Query: 595 KSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASV---FESHL 651
           ++LS+GAAL A+   ++   K +      P  + + TG        + L+SV   FE   
Sbjct: 662 RNLSVGAALVAVVHTLHRFRKRMLYYGVIPRRIKLVTGPTLRIVVAQMLSSVESPFEVSK 721

Query: 652 KELNAP 657
             L AP
Sbjct: 722 VVLRAP 727


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 165/333 (49%), Gaps = 4/333 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + Y+  +  F K    D A +L ++M + G++P    ++ LI+     N  + A+  F
Sbjct: 196 DTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLF 255

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M    C PD  TY+ +I   G+AG ++ A+  +   + E  R D    + +I   G A
Sbjct: 256 EEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKA 315

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNT 342
           G  D  + +++EM+ +   P+++TYN ++  +  +K R  +V + ++ M ++G+SP+  T
Sbjct: 316 GRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFT 375

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y+ L+  + +    E  + +  EM EKG       Y +L+         D A E+F+++K
Sbjct: 376 YSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK 435

Query: 403 SSENCQPDSW-TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             ENC   S   ++ MI      G++ +A  MF+EM + G  P+++   +L+    +   
Sbjct: 436 --ENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGM 493

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
            D+ +  + R+ E G  PD      +LN + +T
Sbjct: 494 LDEALSTMRRMQEHGCIPDINSYNIILNGLAKT 526



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 140/301 (46%), Gaps = 10/301 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-----SCARMNNLPNK 218
           + +  N  +    K   LD A +LF +M      P  VT++T+I     S +R + +P+ 
Sbjct: 301 DTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPS- 359

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
              WFERM   G  P + TYS +ID + +   +E A  L +    + +   P A+ +LI 
Sbjct: 360 ---WFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLID 416

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
             G A  +D    +++E+K      +   Y  ++  +G+A R      ++ EM   G +P
Sbjct: 417 ALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAP 476

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +   Y +L+    R    ++ LS  R M+E G    +  YN +L   A  G    A E+ 
Sbjct: 477 DVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEML 536

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
            +MK S   +PD  ++++++   S  G   EA  +  EM   GFE +L   +S+++  GK
Sbjct: 537 SNMKQS-TVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGK 595

Query: 459 A 459
            
Sbjct: 596 V 596



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 8/289 (2%)

Query: 137 IILNNMTN------PDTAALALTYFTNKLKASKEVILYNVTMK-VFRKCRDLDKAERLFD 189
           + +NNM N          A+ L      L+    V+ YN  +K +F       +    F+
Sbjct: 303 VFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFE 362

Query: 190 DMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
            M + G+ P + T+S LI      N   KA+   E M   G  P    Y S+IDA G+A 
Sbjct: 363 RMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAK 422

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
             ++A  L+   +          ++ +IK  G AG  D  +N+++EM  +G  P++  YN
Sbjct: 423 RYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYN 482

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            L+  + R     +  +  + M ++G  P+ N+Y  +L    +       + +   MK+ 
Sbjct: 483 ALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQS 542

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            ++  V  YNT+L   +  G  +EA ++ ++M ++   + D  T+SS++
Sbjct: 543 TVRPDVVSYNTVLGALSHAGMFEEASKLMKEM-NTLGFEYDLITYSSIL 590



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 120/255 (47%), Gaps = 13/255 (5%)

Query: 232 DPDALTYSSMI------DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           + D  TY ++I      + YG     EM   + +  RN    + P   S ++++ G A  
Sbjct: 87  EHDTSTYMALIHCLEVVEQYG-----EMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKM 141

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYA 344
               + ++ ++K    +P    YN+++  +    +  +V  +Y EM+  G   P+  TY+
Sbjct: 142 VRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYS 201

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+ A+ +    +  + +  EMKE GMQ +  +Y  L+A+         A  +FE+M+  
Sbjct: 202 ALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMR-H 260

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           + C+PD +T++ +I      G++ EA   F EM   G  P+   + ++I   GKA R DD
Sbjct: 261 QYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDD 320

Query: 465 VVRALNRLPELGITP 479
            ++    +  L   P
Sbjct: 321 AMKLFQEMETLRCIP 335



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 101/229 (44%), Gaps = 2/229 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +  F K   ++KA  L ++M ++G  P    + +LI         + A E F+ + 
Sbjct: 376 YSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK 435

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                  A  Y+ MI   G+AG ++ A  ++D         D  A++ L+      G  D
Sbjct: 436 ENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLD 495

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+    M+  G  P++ +YN +L+ + +   P +   +   M  + + P+  +Y ++L
Sbjct: 496 EALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVL 555

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG--YTDEA 394
            A   A   E+   + +EM   G +  +  Y+++L     V   YTD+ 
Sbjct: 556 GALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKVDHEYTDQG 604



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 77/156 (49%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y V +K   K   LD A  +FD+M   G  PD   ++ L+S      + ++A+    RM
Sbjct: 445 VYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRM 504

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              GC PD  +Y+ +++   + G    A  +    +    R D  +++T++     AG F
Sbjct: 505 QEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMF 564

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
           +    + +EM  +G + ++ITY+++L+ +G+    +
Sbjct: 565 EEASKLMKEMNTLGFEYDLITYSSILEAIGKVDHEY 600


>gi|115475155|ref|NP_001061174.1| Os08g0191900 [Oryza sativa Japonica Group]
 gi|40253652|dbj|BAD05595.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623143|dbj|BAF23088.1| Os08g0191900 [Oryza sativa Japonica Group]
 gi|125602452|gb|EAZ41777.1| hypothetical protein OsJ_26318 [Oryza sativa Japonica Group]
 gi|215695295|dbj|BAG90486.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704436|dbj|BAG93870.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 609

 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 160/320 (50%), Gaps = 7/320 (2%)

Query: 174 VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDP 233
            + K  D  +AER+   M  +G KP  ++ + L+          KA   F RM + G +P
Sbjct: 151 AYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQTSGPEP 210

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEK---WRIDPNAFSTLIKLYGTAGNFDGCL 290
            A+TY  ++ ++      + A  +++   NEK   ++ D   F  +I +Y  AG++    
Sbjct: 211 SAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYAQAR 270

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            ++ +M   G+  + +T+N+L+      K   +V +IY +M    L P+  +Y+ L++AY
Sbjct: 271 KLFAQMSERGIPLSTVTFNSLMSFETNYK---EVSSIYDQMQRTALKPDVVSYSLLIKAY 327

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
           G+AR  E+ L+V+ EM + G++ +   YN L+   A  G  +EA  +F+ M+     +PD
Sbjct: 328 GKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMR-RHRVEPD 386

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
             ++++M+        +  AE  F  + E G +PN+ V  +L++ Y K    + V+R   
Sbjct: 387 LCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYE 446

Query: 471 RLPELGITPDDRFCGCLLNV 490
           R+   G+ P+      +++V
Sbjct: 447 RMRMQGVEPNQTIYTTIMDV 466



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 157/349 (44%), Gaps = 12/349 (3%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
           + NK      VI     M+ + + +   KAE +F  M   G +P  VT+  ++      +
Sbjct: 167 YMNKKGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQTSGPEPSAVTYQIILKSFVEGD 226

Query: 215 LPNKAVEWF-----ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
              +A   F     E+  SF   PD   +  MI  Y +AG+   A  L+ +       + 
Sbjct: 227 KYKEAEAIFEDLLNEKRASF--KPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLS 284

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
              F++L+       N+    ++Y++M+   +KP++++Y+ L+   G+A+R  +   +++
Sbjct: 285 TVTFNSLMSF---ETNYKEVSSIYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFE 341

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           EM D G+ P   +Y  L+ A+  +   E+  +V++ M+   ++  +  Y T++    +  
Sbjct: 342 EMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNAS 401

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
             D A + F  +K  +  +P+   + +++   S    V     ++  M   G EPN  + 
Sbjct: 402 DMDGAEKFFRRIK-EDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIY 460

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
           T+++  +G+     + V     +   G   D +    LL+ + +TP+E+
Sbjct: 461 TTIMDVHGRNSDFGNAVIWFKEMEARGYPADKKAKNILLS-LAKTPEEQ 508



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 116/255 (45%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           ++D M    +KPD V++S LI          +A+  FE M   G  P   +Y+ +IDA+ 
Sbjct: 304 IYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFA 363

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
            +G VE A  ++   R  +   D  +++T++  Y  A + DG    +  +K  G+KPN++
Sbjct: 364 ISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVV 423

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
            Y  L+    +     +V  +Y+ M   G+ PN   Y +++  +GR     + +  ++EM
Sbjct: 424 VYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKEM 483

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           + +G        N LL++       +EA E+  +       +PD  T+   I       K
Sbjct: 484 EARGYPADKKAKNILLSLAKTPEEQEEANELTGNCAIQLEAKPDGTTYGLEINGTGNEYK 543

Query: 427 VSEAEAMFNEMLEAG 441
             + +A  + +L+  
Sbjct: 544 HGQNDAGHDSLLDGA 558



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 113/229 (49%), Gaps = 9/229 (3%)

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           W      F  L+  YG  G+F     V + M   G KP++I+   L++  GRAK+  + +
Sbjct: 138 WNFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAE 197

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM---KEKGMQLSVTLYNTLL 382
            +++ M  +G  P+  TY  +L+++      ++  +++ ++   K    +    +++ ++
Sbjct: 198 AVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMI 257

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
            M    G   +A ++F  M  SE   P  + TF+S+++  +   +VS   +++++M    
Sbjct: 258 YMYKKAGDYAQARKLFAQM--SERGIPLSTVTFNSLMSFETNYKEVS---SIYDQMQRTA 312

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
            +P++   + LI+ YGKA+R ++ +     + + G+ P  +    L++ 
Sbjct: 313 LKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDA 361


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 160/318 (50%), Gaps = 1/318 (0%)

Query: 163 KEVILYNVTMKVFRKCRDLDKAERLFDDM-LDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           + V  YN+ +K       +DKA  L++ +  D  + PD VTFST+I         NK+++
Sbjct: 367 RNVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQ 426

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             E   + G + D  +YSSMI    + G ++ A  LY++   + ++ + + ++ LI  + 
Sbjct: 427 ILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFC 486

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   + VY +M      P  ITYN L+  + +A++  +     +EM + G   + N
Sbjct: 487 QASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVN 546

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY SL+R   R +  +  L+++ ++ +KG+Q  V ++N L+      G  DEA ++  +M
Sbjct: 547 TYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEM 606

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K   NC P+  T+++++      G   +A +++  +LE G  P++    + I+      R
Sbjct: 607 KEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNR 666

Query: 462 TDDVVRALNRLPELGITP 479
           T + V+ LN +   GI P
Sbjct: 667 TPEGVQLLNEMLASGIIP 684



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 173/365 (47%), Gaps = 4/365 (1%)

Query: 134 DCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           D  +     ++ D    +L++     + +  +  YN+ ++      DLD+A  LFD +  
Sbjct: 128 DAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGDLDRAVTLFDSLRC 187

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           RG+ PD +T+STL+S    NN  + A+   + MPS+   PDA+ Y++++    R G  E 
Sbjct: 188 RGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEK 247

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           A  ++++   +     PN  +  + L G    G F    +V+E M A   +P+MITY  +
Sbjct: 248 AMRVWEQLVRDPG-ASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTM 306

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +  + R+        +Y EM   GL P+   Y SLL+ +  A    +    +  M   G+
Sbjct: 307 IHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGI 366

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
           + +VT YN +L    D G  D+A +++E ++  ++  PD  TFS+MI     +G  +++ 
Sbjct: 367 R-NVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSL 425

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            +  E   +G E + F  +S+I    K  R DD V+   ++      P+      L+N  
Sbjct: 426 QILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGF 485

Query: 492 TQTPK 496
            Q  K
Sbjct: 486 CQASK 490



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 133/269 (49%), Gaps = 7/269 (2%)

Query: 215 LPNKAVEWFERMPSF-GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW--RIDPN 271
           +P+ A+  F R+PSF GC+P   ++++++DA+ RA     A   +    +  +  RI PN
Sbjct: 99  MPDAALAAFRRLPSFLGCNPGVRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPN 158

Query: 272 --AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
              ++ +++     G+ D  + +++ ++  G+ P+ ITY+ L+    +  R      +  
Sbjct: 159 LQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLD 218

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLLAMCADV 388
           EM    + P+   Y +LL    R    E  + V+ ++ ++ G   ++  YN +L     +
Sbjct: 219 EMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKL 278

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G   EA +++E M ++ N QPD  T+ +MI        V  A  +++EM++ G  P++ +
Sbjct: 279 GMFKEAGDVWERMVAN-NHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVI 337

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGI 477
             SL++ +  A R  +  +  + +   GI
Sbjct: 338 YNSLLKGFCHAGRVGEAWKFWDSMSVSGI 366



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 52/108 (48%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A+  L+    K      V+ YN  M  F +    DKA  L+  +L+ G+ PD ++++T
Sbjct: 597 DEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNT 656

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
            I      N   + V+    M + G  P A+T++ ++ A  + G +++
Sbjct: 657 RIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNILVRAVIKYGPIQI 704


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 168/352 (47%), Gaps = 16/352 (4%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASK--EVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           I+N +   +     +  F   ++     +V+ YN  +    K  DL++A RL  DM  R 
Sbjct: 222 IINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRS 281

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCD--PDALTYSSMIDAYGRAGNVEM 253
             P+ VT+S LI+        ++A E  + M    CD  P+ +TY+S +D   +      
Sbjct: 282 CVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAE 341

Query: 254 AFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           A  L    R+   R+ P+   FSTLI      G  D   +V+++M A G  PN+ITYN L
Sbjct: 342 ACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNAL 401

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           ++ + +A +  +   + + M D G++P+  TY+ L+ A+ +A   ++ L +   M  +G 
Sbjct: 402 VNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGC 461

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
             +V  +N+++        + EAF++F+DM       PD  T+ ++I      G+  +AE
Sbjct: 462 TPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAE 521

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL---NRLPELGITPD 480
           A+ + M     +P+ +       C     +  DV RAL   NR+ EL + PD
Sbjct: 522 ALLDAMP----DPDTYAFNC---CINGLSKLGDVSRALQVYNRMLELELVPD 566



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 159/324 (49%), Gaps = 14/324 (4%)

Query: 164  EVILYNVTMKVFRKCRDLDKAERLFDDM---LDRGVKPDNVTFSTLISCARMNNLPNKAV 220
            +V+ YN  +    K  DL++A RL  DM   + R   P+ VT+S LI+        ++A 
Sbjct: 741  DVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEAR 800

Query: 221  EWFERMPSFGCD--PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTL 276
            E  + M    CD  P+ +TY+S +D   +   +  A  L    R+   R+ P+   FSTL
Sbjct: 801  ELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTL 860

Query: 277  IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
            I      G  D   NV+++M A G  PN++TYN L++ + +  +  +   + + M D G+
Sbjct: 861  IDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGV 920

Query: 337  SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            +P+  TY+ L+ A+ +A + ++ L +   M  +G   +V  +N+++        + EAF+
Sbjct: 921  TPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQ 980

Query: 397  IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
            +F+DM       PD  T+ ++I      G   +AE + + M     +P+ +       C 
Sbjct: 981  MFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMP----DPDTYAFNC---CI 1033

Query: 457  GKAQRTDDVVRALNRLPELGITPD 480
                +  DV RAL+R+ EL + PD
Sbjct: 1034 NGLSKLGDVSRALHRMLELELVPD 1057



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 158/336 (47%), Gaps = 16/336 (4%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   +    K   ++ A  + D M + GV P+ VT++ L+     +    +A ++ 
Sbjct: 601 DVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFL 660

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M S GC PD++TY S++ A  RA   + A  L    ++  W  D   ++ L+     +
Sbjct: 661 EEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKS 720

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT---DNGLSPNW 340
           G  +  + V EEM   G  P+++TYN L+D++ +A    + + ++ +M+        PN 
Sbjct: 721 GQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNV 780

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQL--SVTLYNTLLAMCADVGYTDEAFEIF 398
            TY+ L+    +    ++   + +EM  K   +  ++  YN+ L          EA E+ 
Sbjct: 781 VTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELM 840

Query: 399 EDMK-SSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
             ++  S    PD+ TFS++I  +C C G+  EA  +F++M+  G+ PN+     L+   
Sbjct: 841 RSLRDGSLRVSPDTVTFSTLIDGLCKC-GQTDEACNVFDDMIAGGYVPNVVTYNVLMNGL 899

Query: 457 GKAQRTDDVVRALNRLPELGITPD--------DRFC 484
            K  + +     +  + + G+TPD        D FC
Sbjct: 900 CKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 935



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 160/340 (47%), Gaps = 8/340 (2%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AA  +      L     V+ YN  +    K   +++A +  ++M+  G  PD++T+ +L+
Sbjct: 620 AARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLV 679

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                 +  + A++    + SFG DPD +TY+ ++D   ++G  E A  + +    +   
Sbjct: 680 YALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHH 739

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK---PNMITYNNLLDTMGRAKRPWQV 324
            D   ++TLI     AG+ +    ++ +M +   +   PN++TY+ L++ + +  R  + 
Sbjct: 740 PDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEA 799

Query: 325 KTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS--VTLYNT 380
           + + +EM      + PN  TY S L    +     +   + R +++  +++S     ++T
Sbjct: 800 RELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFST 859

Query: 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
           L+      G TDEA  +F+DM +     P+  T++ ++       K+  A AM   M++ 
Sbjct: 860 LIDGLCKCGQTDEACNVFDDMIAG-GYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDK 918

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           G  P++   + L+  + KA   D+ +  L+ +   G TP+
Sbjct: 919 GVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPN 958



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 157/343 (45%), Gaps = 10/343 (2%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           L+ S + + ++  +    KC  +D+A  +FDDM+  G  P+ +T++ L++     +   +
Sbjct: 354 LRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMER 413

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A    E M   G  PD +TYS ++DA+ +A  V+ A  L     +     +   F+++I 
Sbjct: 414 AHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIID 473

Query: 279 LYGTAGNFDGCLNVYEEMK-AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
               +        ++++M    G+ P+ ITY  L+D + R  R  Q + +   M      
Sbjct: 474 GLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAM------ 527

Query: 338 PNWNTYASLLRAYGRARYGE--DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           P+ +TYA      G ++ G+    L VY  M E  +      +N L+A     G  ++A 
Sbjct: 528 PDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQAS 587

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            +FE+M  ++N QPD  TF ++I      G+V  A  + + M   G  PN+    +L+  
Sbjct: 588 ALFEEM-VAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHG 646

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
             K+ R ++  + L  +   G  PD    G L+  + +  + +
Sbjct: 647 LCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTD 689



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 153/351 (43%), Gaps = 36/351 (10%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDM-LDRGVKPDNVTFSTLI 207
           AL L +       +  V+ +N  +    K     +A ++FDDM L  G+ PD +T+ TLI
Sbjct: 449 ALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLI 508

Query: 208 SC-----------ARMNNLPN--------------------KAVEWFERMPSFGCDPDAL 236
                        A ++ +P+                    +A++ + RM      PD +
Sbjct: 509 DGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKV 568

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           T++ +I    +AGN E A  L++    +  + D   F  LI     AG  +   ++ + M
Sbjct: 569 TFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLM 628

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
             +GV PN++TYN L+  + ++ R  +     +EM  +G  P+  TY SL+ A  RA   
Sbjct: 629 GNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRT 688

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           +D L +  E+K  G       YN L+      G T++A  + E+M    +  PD  T+++
Sbjct: 689 DDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGH-HPDVVTYNT 747

Query: 417 MITICSCRGKVSEAEAMFNEM---LEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +I      G + EA  +  +M   +     PN+   + LI    K  R D+
Sbjct: 748 LIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDE 798



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 156/335 (46%), Gaps = 7/335 (2%)

Query: 152 LTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLISCA 210
           L +F     +S+ V  YN+ ++   +  +  +A  +F   + R GV P  VT++T+I+  
Sbjct: 167 LGFFRRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGL 226

Query: 211 RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP 270
             +N     +E FE +   G  PD +TY+++ID+  +AG++E A  L+    +     + 
Sbjct: 227 CKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNV 286

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEM--KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
             +S LI      G  D    + +EM  K+  V PN+ITYN+ LD + +     +   + 
Sbjct: 287 VTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELM 346

Query: 329 KEMTDNGL--SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           + + D  L  SP+  T+++L+    +    ++  SV+ +M   G   +V  YN L+    
Sbjct: 347 RSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLC 406

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
                + A  + E M   +   PD  T+S ++       +V EA  + + M   G  PN+
Sbjct: 407 KADKMERAHAMIESM-VDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNV 465

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLP-ELGITPD 480
               S+I    K+ R+ +  +  + +  + G+ PD
Sbjct: 466 VTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPD 500



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 148/319 (46%), Gaps = 54/319 (16%)

Query: 216 PNKAVEWFE-RMPSFGCDPDALTYSSMIDA-YGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           P KA++ F  R+P   C P+  TYS+++ A Y   G+VE   G + R R+    +    +
Sbjct: 127 PAKAIDLFRSRLPPR-CRPNHFTYSTLLRATYKAGGDVERTLGFFRRIRSSSRSV--ADY 183

Query: 274 STLIKLYGTAGNFDGCLNVYE-EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           + +++    AG     L ++  EM   GV P ++TYN +++ + ++        +++E+ 
Sbjct: 184 NIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELV 243

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
           + G  P+  TY +L+ +  +A   E+   ++ +M  +    +V  Y+ L+     VG  D
Sbjct: 244 ERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRID 303

Query: 393 EAFEIFEDMK-------------------------SSENCQ-------------PDSWTF 414
           EA E+ ++M                          ++E C+             PD+ TF
Sbjct: 304 EARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTF 363

Query: 415 SSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           S++I  +C C G++ EA ++F++M+  G+ PN+    +L+    KA + +     +  + 
Sbjct: 364 STLIDGLCKC-GQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMV 422

Query: 474 ELGITPD--------DRFC 484
           + G+TPD        D FC
Sbjct: 423 DKGVTPDVITYSVLVDAFC 441



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 29/224 (12%)

Query: 165  VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
            V+ YNV M    K   +++A  + + M+D+GV PD +T+S L+      +  ++A+E   
Sbjct: 889  VVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLH 948

Query: 225  RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD-RARNEKWRIDPNAFSTLIK-LY-- 280
             M S GC P+ +T++S+ID   ++     AF ++D          D   + TLI  L+  
Sbjct: 949  GMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRT 1008

Query: 281  GTAGN---------------FDGCLN----------VYEEMKAIGVKPNMITYNNLLDTM 315
            G AG                F+ C+N              M  + + P+ +T+N L+   
Sbjct: 1009 GWAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILIAGA 1068

Query: 316  GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
             +A    Q   +++EM    L P+  T+ +L+    +A   E T
Sbjct: 1069 CKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAT 1112



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 32/195 (16%)

Query: 162  SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
            + +VI Y+V +  F K   +D+A  L   M  RG  P+ VTF+++I     ++   +A +
Sbjct: 921  TPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQ 980

Query: 222  WFERMP-SFGCDPDALTYSSMIDAY---GRAGNVEM-----------AF----------G 256
             F+ M    G  PD +TY ++ID     G AG  E+           AF          G
Sbjct: 981  MFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCINGLSKLG 1040

Query: 257  LYDRARNEKWRI----DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
               RA +    +    D   F+ LI     AGNF+    ++EEM A  ++P+++T+  L+
Sbjct: 1041 DVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALI 1100

Query: 313  DTM---GRAKRPWQV 324
            D +   G+ +  W +
Sbjct: 1101 DGLCKAGQVEATWDI 1115



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 91/208 (43%), Gaps = 6/208 (2%)

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRAKR 320
           R  K R+ P+  + +  L    GN +     Y+   A+ G K  + ++N  L+ + ++  
Sbjct: 69  RGCKGRLHPSVAAAI--LAQLDGNAELGTQFYDWAAALPGFKHTIFSFNKYLNLLVKSGS 126

Query: 321 PWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
           P +   +++        PN  TY++LLRA Y      E TL  +R ++      SV  YN
Sbjct: 127 PAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVERTLGFFRRIRSS--SRSVADYN 184

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
            +L      G T  A EIF    + +   P   T++++I       ++     +F E++E
Sbjct: 185 IVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVE 244

Query: 440 AGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            G  P++    +LI    KA   ++  R
Sbjct: 245 RGHHPDVVTYNTLIDSLCKAGDLEEARR 272



 Score = 46.6 bits (109), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 137  IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV 196
            ++L+ M +PDT A                  +N  +    K  D+ +A      ML+  +
Sbjct: 1016 VLLDAMPDPDTYA------------------FNCCINGLSKLGDVSRA---LHRMLELEL 1054

Query: 197  KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
             PD VTF+ LI+ A       +A   FE M +    PD +T+ ++ID   +AG VE
Sbjct: 1055 VPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVE 1110


>gi|242083798|ref|XP_002442324.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
 gi|241943017|gb|EES16162.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
          Length = 647

 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 119/538 (22%), Positives = 244/538 (45%), Gaps = 34/538 (6%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI----SCARMNNLPNKAVEWF 223
           +N  +    +   L+ A  +FD+M+  G   D  T++T +     C  M      A +  
Sbjct: 97  FNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCGNME----LATQVV 152

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M +    P+ +TYS+++D + +    + A  L ++ ++   ++D   ++TL+ +Y   
Sbjct: 153 LDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQLDRVCYNTLLAIYVKT 212

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G +D    V E+M+ +G++ + +TYN+L++  G+  R   V  + ++M   G++P+  TY
Sbjct: 213 GKYDEIATVCEDMENLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTY 272

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           ++L+  Y +A    D  +VY + KE G++  V L+++ +   A  G  + A  + ++M  
Sbjct: 273 STLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECALSLLDEMIK 332

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---- 459
               +P+  T++++I     + K+   E   N  +   +   +   T+ +   G++    
Sbjct: 333 M-GIKPNVVTYNTIIDAFG-KSKILTEEDPGNMGIVGVYGGQIVRATNPVTRGGRSATDV 390

Query: 460 --QRTDD---VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK-SNSK 512
             +R+ +   ++    ++ + G+ P+      +LN  ++    E+   L+E +    NS 
Sbjct: 391 RMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSRCNNFEDAALLLEQLRLFDNSV 450

Query: 513 LGYVVKLLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACKL 569
            G    LL+   +       +A  LFN + +       A+ N L D+  +    + A ++
Sbjct: 451 YGVAYGLLMGHLEAW----SQARSLFNQLGRMDSPTSSAFYNALTDVLWHFGQRQGAQQV 506

Query: 570 LELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGI 629
           +  G+   V+ +        + L L  +S GAA   +H W+ ++   +  G   P  L I
Sbjct: 507 VLEGVNRRVWENTWG----DFCLDLHLMSCGAAQAMVHAWLLNVRSIVFEGRAMPEFLSI 562

Query: 630 NTGHGKHK--YSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSL 685
            TG GKH        L  V E+ L  + APF      +G F++  A   +WL    ++
Sbjct: 563 LTGWGKHSKIAGSSTLRRVIEALLLSIGAPFQVERFNIGRFVSPSALVAAWLRESGTV 620



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 145/325 (44%), Gaps = 8/325 (2%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D A R FD  +           S LIS    + L  +A+   E M   G  P  ++Y+++
Sbjct: 5   DLARRAFDSGIADRYGNTVFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAV 64

Query: 242 IDAYGRAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           IDA G+ G ++    G + +   +    D   F++L+     AG+ +    V++EM  +G
Sbjct: 65  IDACGKGGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLG 124

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
              ++ TYN  +D + +         +  +M  N + PN  TY++L+  + +    ++ L
Sbjct: 125 SGRDIYTYNTFVDAICKCGNMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEAL 184

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            +  +MK  G+QL    YNTLLA+    G  DE   + EDM++    + D+ T++S+I  
Sbjct: 185 KLREKMKSLGIQLDRVCYNTLLAIYVKTGKYDEIATVCEDMENL-GIEKDTVTYNSLING 243

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              +G++     +  +M   G  P++   ++LI  Y KA    D         E G+  D
Sbjct: 244 YGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKAD 303

Query: 481 DRFCGCLLNVMTQTPKEELGKLVEC 505
                  ++ + +        LVEC
Sbjct: 304 VVLFSSFIDTLAKN------GLVEC 322



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 125/268 (46%), Gaps = 12/268 (4%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L      L    + + YN  + ++ K    D+   + +DM + G++ D VT+++LI+
Sbjct: 183 ALKLREKMKSLGIQLDRVCYNTLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLIN 242

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   +      + M + G  P  LTYS++ID Y +AG    AF +Y   +    + 
Sbjct: 243 GYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKA 302

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ----- 323
           D   FS+ I      G  +  L++ +EM  +G+KPN++TYN ++D  G++K   +     
Sbjct: 303 DVVLFSSFIDTLAKNGLVECALSLLDEMIKMGIKPNVVTYNTIIDAFGKSKILTEEDPGN 362

Query: 324 --VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED---TLSVYREMKEKGMQLSVTLY 378
             +  +Y        +P      S      R R  ++    L ++++M ++G++ +V  +
Sbjct: 363 MGIVGVYGGQIVRATNPVTRGGRSATDV--RMRRSQELFFILELFQKMVQQGVRPNVVTF 420

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + +L  C+     ++A  + E ++  +N
Sbjct: 421 SAILNACSRCNNFEDAALLLEQLRLFDN 448


>gi|410110071|gb|AFV61115.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           macrostachya]
          Length = 437

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 166/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 81  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVF 140

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 141 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 198

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   +  N++TYN+++   G+     +   + +EM + G+ PN  
Sbjct: 199 DAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSI 258

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   LY T++      G    A  +  ++
Sbjct: 259 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHEL 318

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           KS +N   D     + I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++
Sbjct: 319 KSPDNIPRD-----TAIHILAGAGRIEEATYVFRQAIDAGEVKDIMVFERMIHLFSKYKK 373

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 374 YANVVEVFDKMRGLGYFPDSNVIALVLN 401



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 147/314 (46%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 15  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 74

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 75  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFL 134

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 135 EALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 194

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++  M+ K +  +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 195 RVYGDAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 253

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R
Sbjct: 254 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKR 313

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 314 LLHELKSPDNIPRD 327



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 138/292 (47%), Gaps = 1/292 (0%)

Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
           D+M  R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   + 
Sbjct: 1   DEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
            +   A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           + LL      K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M++
Sbjct: 121 STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G++ +V  YNTLL +  D     EA  +F  M+  +N   +  T++SM+ I     +  
Sbjct: 181 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQ-RKNIVQNVVTYNSMMMIYGKTLEHE 239

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +A  +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 240 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 291



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 113/236 (47%), Gaps = 4/236 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 206 AIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 265

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + Y +MI AY RAG V  A     R  +E    
Sbjct: 266 IWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHA----KRLLHELKSP 321

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   +++ +  ++    + K+   V  ++
Sbjct: 322 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIMVFERMIHLFSKYKKYANVVEVF 381

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
            +M   G  P+ N  A +L AYG+    +    VY EM+E G   S  ++  +L++
Sbjct: 382 DKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQEVGCVFSDEVHFQMLSL 437



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 79/164 (48%), Gaps = 1/164 (0%)

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           EM    LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   + 
Sbjct: 2   EMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 61

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
              +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    
Sbjct: 62  DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           ++L+  Y + ++  + +   + + E+    D   C  +++V  Q
Sbjct: 121 STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 164



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/232 (20%), Positives = 96/232 (41%), Gaps = 36/232 (15%)

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
           D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   + 
Sbjct: 1   DEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
               +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EM+  G        
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAG-------- 112

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
                                         P++ ++S+++T+     K  EA ++F+EM 
Sbjct: 113 ----------------------------VMPNTASYSTLLTMYVENKKFLEALSVFSEMR 144

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
           E     +L     +I  YG+     +  +    + ++GI P+      LL V
Sbjct: 145 EIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRV 196



 Score = 43.5 bits (101), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           EM+++ +      Y+TL+      G  D A    + M+  +    D   +S++I +    
Sbjct: 2   EMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ-DRVPGDLVLYSNLIELSRKL 60

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
              S+A ++F+ +  +GF P+L    ++I  +GKA+   +    ++ +   G+ P+    
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120

Query: 485 GCLLNVMTQTPK 496
             LL +  +  K
Sbjct: 121 STLLTMYVENKK 132


>gi|307105412|gb|EFN53661.1| hypothetical protein CHLNCDRAFT_58444 [Chlorella variabilis]
          Length = 1131

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 217/486 (44%), Gaps = 76/486 (15%)

Query: 199 DNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           D  TF+++IS C    +L  +A+   E M   G + +  T+S++++   + G  ++A  +
Sbjct: 290 DEFTFTSMISNCVAQQDL-GRAMALAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDV 348

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
           Y   +      +   ++TLI +YG +G ++  L V E+MK   ++P   T+N L+     
Sbjct: 349 YRDMQAAGCPANVVTYNTLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNT 408

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
           + +  +   +Y++M  +   PN  TY +L+ A+ +       L+V++EM +KG + SV  
Sbjct: 409 SNQWQEALRVYEQMAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVIT 468

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           Y++L++ C   G    A ++FE+M+  E C P+  +++S+IT C+   +  +A  +F +M
Sbjct: 469 YSSLISACEKAGEWKLALQLFEEMRG-EGCVPNVISYNSLITACAQGAQWEKAAEVFEQM 527

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL----GITPDDRFCGCLLNVMTQ 493
              G  P++   T+LIQ Y   +R     RAL    E+       PD      +++V+ +
Sbjct: 528 QRQGCRPDVVSYTALIQAY---ERGGQWRRALAAFEEMIRARPCAPDSIVYNTIIDVLWE 584

Query: 494 TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCL 553
           T                  +G+               +++A  LF       ++A    L
Sbjct: 585 T-----------------GVGWA--------------QRKAASLF-------RQASAEGL 606

Query: 554 IDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDL 613
           I            C     G +LE              L+L S + G AL +LH W++DL
Sbjct: 607 IR-----------CHSHAAGGSLE--------------LNLHSTTPGVALLSLHCWLHDL 641

Query: 614 SKAL--ESGEEFPPLLGINTGHGKHKYSDKG-LASVFESHLKELNAPFHDSPDKVGWFLT 670
              L  E  E  P  + I  G GK K +    +     + L+ L +PF ++PD       
Sbjct: 642 LAKLQAEGPEALPDKICIIAGKGKSKDAPHSIIKETVGALLRSLRSPFEEAPDSTPHVGR 701

Query: 671 TEAAAK 676
            EAA K
Sbjct: 702 LEAAGK 707



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 140/262 (53%), Gaps = 1/262 (0%)

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           +DL +A  L ++M DRG++ +  TFS L++          A++ +  M + GC  + +TY
Sbjct: 305 QDLGRAMALAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDMQAAGCPANVVTY 364

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           +++ID YG++G  E A  + ++ + E+ +     F+TL+    T+  +   L VYE+M A
Sbjct: 365 NTLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYEQMAA 424

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
               PN  TYN L+    +     +V  ++KEM   G   +  TY+SL+ A  +A   + 
Sbjct: 425 SSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLISACEKAGEWKL 484

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            L ++ EM+ +G   +V  YN+L+  CA     ++A E+FE M+  + C+PD  +++++I
Sbjct: 485 ALQLFEEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQ-RQGCRPDVVSYTALI 543

Query: 419 TICSCRGKVSEAEAMFNEMLEA 440
                 G+   A A F EM+ A
Sbjct: 544 QAYERGGQWRRALAAFEEMIRA 565



 Score = 46.2 bits (108), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI YN  +    +    +KA  +F+ M  +G +PD V+++ LI          +A+  FE
Sbjct: 501 VISYNSLITACAQGAQWEKAAEVFEQMQRQGCRPDVVSYTALIQAYERGGQWRRALAAFE 560

Query: 225 RM-PSFGCDPDALTYSSMIDAYGRAG 249
            M  +  C PD++ Y+++ID     G
Sbjct: 561 EMIRARPCAPDSIVYNTIIDVLWETG 586


>gi|302753732|ref|XP_002960290.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
 gi|300171229|gb|EFJ37829.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
          Length = 546

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 158/327 (48%), Gaps = 1/327 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +  YNV +K   + R  + AE L  +M+++ + PD  TFSTLIS     N    A+ W +
Sbjct: 25  IFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAMGWLQ 84

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M + G  PD + +S++I+  G+  +   A  L+ + +      D   ++++I LYG A 
Sbjct: 85  EMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAK 144

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            +     +  EMK  G+ P+ ++Y  L++    +++  + K ++ EM   G+  +  T  
Sbjct: 145 FYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCN 204

Query: 345 SLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            ++  YG+     D   ++  M K  G+Q +V  YNT++ +  +     EAF +F  M++
Sbjct: 205 MMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQN 264

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               +P+  T+++++ +     +  +A  +  +M + G EPN    ++LI  YGK  + D
Sbjct: 265 KGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYD 324

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNV 490
                   L E G   D+     ++ V
Sbjct: 325 RAAFLFKTLREKGFEMDEILYQSMIVV 351



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 139/265 (52%), Gaps = 1/265 (0%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           PD  T+S++I  YGRA  +E A G          + D   FSTLI+L G   ++    ++
Sbjct: 58  PDKFTFSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSL 117

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           + ++KA G+ P+ + YN++++  G+AK   + + +  EM + GL P+  +Y  L+ AY  
Sbjct: 118 FSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAE 177

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
           ++   +   V+ EMK KG+QL VT  N ++ +   +    +A E+F  M  +   Q +  
Sbjct: 178 SQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVV 237

Query: 413 TFSSMITICSCRGKVSEAEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
           T+++MI +      +SEA  +F  M  + G EPN+    +++  +G   + +  +R + +
Sbjct: 238 TYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRK 297

Query: 472 LPELGITPDDRFCGCLLNVMTQTPK 496
           + + GI P+      L+++  +T K
Sbjct: 298 MQQRGIEPNAVTYSTLISIYGKTGK 322



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 169/352 (48%), Gaps = 12/352 (3%)

Query: 153 TYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC 209
           T   +KLKAS    + ++YN  + ++ K +   +A+ L  +M + G+ PD V+++ LI+ 
Sbjct: 115 TSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINA 174

Query: 210 ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
              +    +A + F  M + G   D  T + MID YG+   V  A  L+  + ++   I 
Sbjct: 175 YAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELF-WSMSKTLGIQ 233

Query: 270 PNA--FSTLIKLYGTAGNFDGCLNVYEEMK-AIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
            N   ++T+IK+Y  A       NV+  M+   GV+PN+ITYN +L   G   +  +   
Sbjct: 234 QNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMR 293

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           + ++M   G+ PN  TY++L+  YG+    +    +++ ++EKG ++   LY +++ +  
Sbjct: 294 LVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYE 353

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G    A  + E++K     QPD     + I+I +   K+ EA  ++    EAG     
Sbjct: 354 RAGLVAHAKRLLEELK-----QPDIVPRDTAISILAKAEKLEEAAKLYWRSHEAGEIKES 408

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
               S+IQ + + +R+ + +     + E G  PD      LL    Q  + E
Sbjct: 409 VTYKSMIQLFVRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLRQLE 460



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 145/311 (46%), Gaps = 34/311 (10%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG-VKPDNVTFSTLISCARMNNLPN 217
           L   + V+ YN  +KV+++   L +A  +F  M ++G V+P+ +T++T++    +     
Sbjct: 230 LGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHE 289

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           KA+    +M   G +P+A+TYS++I  YG+ G  + A  L+   R + + +D   + ++I
Sbjct: 290 KAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMI 349

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPN-------------------------------MI 306
            +Y  AG       + EE+K   + P                                 +
Sbjct: 350 VVYERAGLVAHAKRLLEELKQPDIVPRDTAISILAKAEKLEEAAKLYWRSHEAGEIKESV 409

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TY +++    R KR      +++ M ++G  P+  T   LL AYG+ R  ED   +Y +M
Sbjct: 410 TYKSMIQLFVRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLRQLEDAEKLYLDM 469

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           +E+G  L   ++  +L +  D     EA ++F  +K  E    D   + +MI I     K
Sbjct: 470 RERGCTLEKEVHFQMLKLYGDARKIREAEDMFAALK-LEGLDGDE-LYLTMIRIYERASK 527

Query: 427 VSEAEAMFNEM 437
           ++EA  +F+EM
Sbjct: 528 LNEASRLFSEM 538



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 3/192 (1%)

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQV-KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
           G  P++  YN +L  + RA R W++ + +  EM +  L P+  T+++L+  YGRA   ED
Sbjct: 20  GYAPSIFAYNVVLKNVLRA-RQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLED 78

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            +   +EM+  G++  + +++TL+ +   V    +A  +F  +K+S    PD   ++SMI
Sbjct: 79  AMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKAS-GIAPDKVIYNSMI 137

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
            +        EA+ +  EM EAG  P+    T LI  Y ++Q+  +  +    +   GI 
Sbjct: 138 NLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQ 197

Query: 479 PDDRFCGCLLNV 490
            D   C  +++V
Sbjct: 198 LDVTTCNMMIDV 209



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 154/324 (47%), Gaps = 13/324 (4%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           N+ + V+ K   +  AE LF  M    G++ + VT++T+I   +   L ++A   F  M 
Sbjct: 204 NMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQ 263

Query: 228 S-FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAG 284
           +  G +P+ +TY++++  +G     E A  L  + +     I+PNA  +STLI +YG  G
Sbjct: 264 NKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRG--IEPNAVTYSTLISIYGKTG 321

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            +D    +++ ++  G + + I Y +++    RA      K + +E+    + P  +T  
Sbjct: 322 KYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIVPR-DTAI 380

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKG-MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           S+L    +A   E+   +Y    E G ++ SVT Y +++ +      +  A ++FE+M+ 
Sbjct: 381 SIL---AKAEKLEEAAKLYWRSHEAGEIKESVT-YKSMIQLFVRNKRSKNAIDVFENMRE 436

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S    PDS T   ++       ++ +AE ++ +M E G      V   +++ YG A++  
Sbjct: 437 S-GFLPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYGDARKIR 495

Query: 464 DVVRALNRLPELGITPDDRFCGCL 487
           +       L   G+  D+ +   +
Sbjct: 496 EAEDMFAALKLEGLDGDELYLTMI 519



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 127/342 (37%), Gaps = 76/342 (22%)

Query: 100 NSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALT------ 153
           N ++ +   L+     E+  +S+ + LG     Q  V+  N M      A  L+      
Sbjct: 204 NMMIDVYGKLEMVRDAEELFWSMSKTLGI----QQNVVTYNTMIKVYKEAELLSEAFNVF 259

Query: 154 -YFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARM 212
            Y  NK      VI YN  + +       +KA RL   M  RG++P+ VT+STLIS    
Sbjct: 260 YYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGK 319

Query: 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR------------ 260
               ++A   F+ +   G + D + Y SMI  Y RAG V  A  L +             
Sbjct: 320 TGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIVPRDTA 379

Query: 261 ----ARNEK--------WRI-------DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
               A+ EK        WR        +   + ++I+L+         ++V+E M+  G 
Sbjct: 380 ISILAKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFVRNKRSKNAIDVFENMRESGF 439

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT------------------- 342
            P+  T   LL   G+ ++    + +Y +M + G +                        
Sbjct: 440 LPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYGDARKIREAED 499

Query: 343 ---------------YASLLRAYGRARYGEDTLSVYREMKEK 369
                          Y +++R Y RA    +   ++ EMK +
Sbjct: 500 MFAALKLEGLDGDELYLTMIRIYERASKLNEASRLFSEMKSR 541


>gi|302768008|ref|XP_002967424.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
 gi|300165415|gb|EFJ32023.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
          Length = 546

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 158/327 (48%), Gaps = 1/327 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +  YNV +K   + R  + AE L  +M+++ + PD  TFSTLIS     N    A+ W +
Sbjct: 25  IFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAMGWLQ 84

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M + G  PD + +S++I+  G+  +   A  L+ + +      D   ++++I LYG A 
Sbjct: 85  EMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAK 144

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            +     +  EMK  G+ P+ ++Y  L++    +++  + K ++ EM   G+  +  T  
Sbjct: 145 FYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCN 204

Query: 345 SLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            ++  YG+     D   ++  M K  G+Q +V  YNT++ +  +     EAF +F  M++
Sbjct: 205 MMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQN 264

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               +P+  T+++++ +     +  +A  +  +M + G EPN    ++LI  YGK  + D
Sbjct: 265 KGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYD 324

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNV 490
                   L E G   D+     ++ V
Sbjct: 325 RAAFLFKTLREKGFEMDEILYQSMIVV 351



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 139/265 (52%), Gaps = 1/265 (0%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           PD  T+S++I  YGRA  +E A G          + D   FSTLI+L G   ++    ++
Sbjct: 58  PDKFTFSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSL 117

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           + ++KA G+ P+ + YN++++  G+AK   + + +  EM + GL P+  +Y  L+ AY  
Sbjct: 118 FSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAE 177

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
           ++   +   V+ EMK KG+QL VT  N ++ +   +    +A E+F  M  +   Q +  
Sbjct: 178 SQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVV 237

Query: 413 TFSSMITICSCRGKVSEAEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
           T+++MI +      +SEA  +F  M  + G EPN+    +++  +G   + +  +R + +
Sbjct: 238 TYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRK 297

Query: 472 LPELGITPDDRFCGCLLNVMTQTPK 496
           + + GI P+      L+++  +T K
Sbjct: 298 MQQRGIEPNAVTYSTLISIYGKTGK 322



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 169/352 (48%), Gaps = 12/352 (3%)

Query: 153 TYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC 209
           T   +KLKAS    + ++YN  + ++ K +   +A+ L  +M + G+ PD V+++ LI+ 
Sbjct: 115 TSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINA 174

Query: 210 ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
              +    +A + F  M + G   D  T + MID YG+   V  A  L+  + ++   I 
Sbjct: 175 YAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELF-WSMSKTLGIQ 233

Query: 270 PNA--FSTLIKLYGTAGNFDGCLNVYEEMK-AIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
            N   ++T+IK+Y  A       NV+  M+   GV+PN+ITYN +L   G   +  +   
Sbjct: 234 QNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMR 293

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           + ++M   G+ PN  TY++L+  YG+    +    +++ ++EKG ++   LY +++ +  
Sbjct: 294 LVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYE 353

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G    A  + E++K     QPD     + I+I +   K+ EA  ++    EAG     
Sbjct: 354 RAGLVAHAKRLLEELK-----QPDIVPRDTAISILAKAEKLEEAAKLYWRSHEAGEIKES 408

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
               S+IQ + + +R+ + +     + E G  PD      LL    Q  + E
Sbjct: 409 VTYKSMIQLFMRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLRQLE 460



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 145/311 (46%), Gaps = 34/311 (10%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG-VKPDNVTFSTLISCARMNNLPN 217
           L   + V+ YN  +KV+++   L +A  +F  M ++G V+P+ +T++T++    +     
Sbjct: 230 LGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHE 289

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           KA+    +M   G +P+A+TYS++I  YG+ G  + A  L+   R + + +D   + ++I
Sbjct: 290 KAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMI 349

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPN-------------------------------MI 306
            +Y  AG       + EE+K   + P                                 +
Sbjct: 350 VVYERAGLVAHAKRLLEELKQPDIVPRDTAISILAKAEKLEEAAKLYWRSHEAGEIKESV 409

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TY +++    R KR      +++ M ++G  P+  T   LL AYG+ R  ED   +Y +M
Sbjct: 410 TYKSMIQLFMRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLRQLEDAEKLYLDM 469

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           +E+G  L   ++  +L +  D     EA ++F  +K  E    D   + +MI I     K
Sbjct: 470 RERGCTLEKEVHFQMLKLYGDARKIREAEDMFAALK-LEGLDGDE-LYLTMIRIYERASK 527

Query: 427 VSEAEAMFNEM 437
           ++EA  +F+EM
Sbjct: 528 LNEASRLFSEM 538



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 3/192 (1%)

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQV-KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
           G  P++  YN +L  + RA R W++ + +  EM +  L P+  T+++L+  YGRA   ED
Sbjct: 20  GYAPSIFAYNVVLKNVLRA-RQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLED 78

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            +   +EM+  G++  + +++TL+ +   V    +A  +F  +K+S    PD   ++SMI
Sbjct: 79  AMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKAS-GIAPDKVIYNSMI 137

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
            +        EA+ +  EM EAG  P+    T LI  Y ++Q+  +  +    +   GI 
Sbjct: 138 NLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQ 197

Query: 479 PDDRFCGCLLNV 490
            D   C  +++V
Sbjct: 198 LDVTTCNMMIDV 209



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 154/324 (47%), Gaps = 13/324 (4%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           N+ + V+ K   +  AE LF  M    G++ + VT++T+I   +   L ++A   F  M 
Sbjct: 204 NMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQ 263

Query: 228 S-FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAG 284
           +  G +P+ +TY++++  +G     E A  L  + +     I+PNA  +STLI +YG  G
Sbjct: 264 NKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRG--IEPNAVTYSTLISIYGKTG 321

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            +D    +++ ++  G + + I Y +++    RA      K + +E+    + P  +T  
Sbjct: 322 KYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIVPR-DTAI 380

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKG-MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           S+L    +A   E+   +Y    E G ++ SVT Y +++ +      +  A ++FE+M+ 
Sbjct: 381 SIL---AKAEKLEEAAKLYWRSHEAGEIKESVT-YKSMIQLFMRNKRSKNAIDVFENMRE 436

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S    PDS T   ++       ++ +AE ++ +M E G      V   +++ YG A++  
Sbjct: 437 S-GFLPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYGDARKIR 495

Query: 464 DVVRALNRLPELGITPDDRFCGCL 487
           +       L   G+  D+ +   +
Sbjct: 496 EAEDMFAALKLEGLDGDELYLTMI 519



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 127/342 (37%), Gaps = 76/342 (22%)

Query: 100 NSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALT------ 153
           N ++ +   L+     E+  +S+ + LG     Q  V+  N M      A  L+      
Sbjct: 204 NMMIDVYGKLEMVRDAEELFWSMSKTLGI----QQNVVTYNTMIKVYKEAELLSEAFNVF 259

Query: 154 -YFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARM 212
            Y  NK      VI YN  + +       +KA RL   M  RG++P+ VT+STLIS    
Sbjct: 260 YYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGK 319

Query: 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR------------ 260
               ++A   F+ +   G + D + Y SMI  Y RAG V  A  L +             
Sbjct: 320 TGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIVPRDTA 379

Query: 261 ----ARNEK--------WRI-------DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
               A+ EK        WR        +   + ++I+L+         ++V+E M+  G 
Sbjct: 380 ISILAKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFMRNKRSKNAIDVFENMRESGF 439

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT------------------- 342
            P+  T   LL   G+ ++    + +Y +M + G +                        
Sbjct: 440 LPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYGDARKIREAED 499

Query: 343 ---------------YASLLRAYGRARYGEDTLSVYREMKEK 369
                          Y +++R Y RA    +   ++ EMK +
Sbjct: 500 MFAALKLEGLDGDELYLTMIRIYERASKLNEASRLFSEMKSR 541


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 173/342 (50%), Gaps = 7/342 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFER 225
           YN+ + +      +++A  + D+M   G+ P+ +T + ++   C      P  A E FE 
Sbjct: 394 YNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEP--AYEMFET 451

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
               GC+P+++TY S+ID  G+ GNV+ A+ L++   +     +P  +++LI+ +   G 
Sbjct: 452 ASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGR 511

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    +++EM   G +P++   N  +D + +A    + + I++++   G  P+  +Y+ 
Sbjct: 512 KEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSI 571

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+    +A    +T S++  MK++G  L    YN ++      G  D+A+E+ E+MK  +
Sbjct: 572 LIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMK-VK 630

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              P   T+ S+I   +   ++ EA  +F E    G E N+ V +SLI  +GK  R D+ 
Sbjct: 631 RVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEA 690

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
              L  + + G+TP+      L++ + +   EE+ + + C +
Sbjct: 691 YLILEEMMKKGLTPNVYTWNSLMDALVKA--EEINEALICFQ 730



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 144/304 (47%), Gaps = 2/304 (0%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           + R LD AER+   M     +P    ++ LI        P +A+E   +M   G +    
Sbjct: 159 RTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVP 218

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            +++++ A  R G VE A  L D  +      D   ++  I  +G AGN D     + E+
Sbjct: 219 LFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHEL 278

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           K+ G+KP+ ++Y +++  + +A R  + + ++ +M      P    Y +++  YG A   
Sbjct: 279 KSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQF 338

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           E+   +  ++KE+G   SV  +N++L         DEA  +FE MK  ++ +P+S T++ 
Sbjct: 339 ENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMK--KDAEPNSSTYNI 396

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I +    GKV EA  + +EM  AG  PNL  +  ++    KA++ +          + G
Sbjct: 397 IIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRG 456

Query: 477 ITPD 480
             P+
Sbjct: 457 CNPN 460



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 150/330 (45%), Gaps = 3/330 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++Y   ++ F      +   ++F +M  RG +PD    +T + C        K    FE 
Sbjct: 497 VVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFED 556

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +  +G  PD  +YS +I    +AG       ++   + + + +D  A++ ++  +  +G 
Sbjct: 557 IKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGK 616

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D    V EEMK   V P + TY +++D + +  R  +   +++E    G+  N   Y+S
Sbjct: 617 LDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSS 676

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  +G+    ++   +  EM +KG+  +V  +N+L+         +EA   F+ MK  +
Sbjct: 677 LIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMK 736

Query: 406 NCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            C P+++T+S +I  +C  + K ++A   + EM + G  PN+   T++I    K     D
Sbjct: 737 -CSPNTYTYSILINGLCRVQ-KYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITD 794

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQT 494
                 R    G TPD      L+  M+  
Sbjct: 795 ACSLFERFKANGGTPDAASFNALIEGMSHA 824



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 158/332 (47%), Gaps = 4/332 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++LYNV +  F K  ++D A + F ++  +G+KPD+V+++++I         ++A E F
Sbjct: 251 DIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELF 310

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M +    P A  Y++MI  YG AG  E A+ L D+ +         +F++++   G  
Sbjct: 311 GQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKK 370

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D  L ++E MK    +PN  TYN ++D +  A +  +   I  EM   GL PN  T 
Sbjct: 371 RKVDEALTLFEAMKK-DAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTV 429

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-K 402
             ++    +A+  E    ++    ++G   +   Y +L+      G  D+A+ +FE+M  
Sbjct: 430 NIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLD 489

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           +  N  P  +T  S+I      G+  +   +F EM   G +P+L +L + + C  KA   
Sbjct: 490 TGHNANPVVYT--SLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDV 547

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           +        +   G  PD R    L++ +T+ 
Sbjct: 548 EKGRAIFEDIKGYGFLPDVRSYSILIHGLTKA 579



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 163/339 (48%), Gaps = 2/339 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V L+   ++   +   ++ A  L D++    ++PD V ++  I C       + A ++F 
Sbjct: 217 VPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFH 276

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            + S G  PD ++Y+SMI    +AG +  A  L+ +   E+      A++T+I  YG+AG
Sbjct: 277 ELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAG 336

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            F+    + +++K  G  P+++++N++L  +G+ ++  +  T+++ M  +   PN +TY 
Sbjct: 337 QFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDA-EPNSSTYN 395

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            ++     A   E+   +  EM+  G+  ++   N ++         + A+E+FE   S 
Sbjct: 396 IIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFET-ASQ 454

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
             C P+S T+ S+I     +G V +A  +F  ML+ G   N  V TSLI+ +    R +D
Sbjct: 455 RGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKED 514

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 503
             +    +   G  PD       ++ + +    E G+ +
Sbjct: 515 GHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAI 553



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 151/339 (44%), Gaps = 36/339 (10%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC------- 209
           N+     ++ L N  M    K  D++K   +F+D+   G  PD  ++S LI         
Sbjct: 523 NRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQA 582

Query: 210 ------------------ARMNNLP----------NKAVEWFERMPSFGCDPDALTYSSM 241
                             AR  N            +KA E  E M      P   TY S+
Sbjct: 583 RETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSI 642

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           ID   +   ++ A+ L++ A+++   ++   +S+LI  +G  G  D    + EEM   G+
Sbjct: 643 IDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGL 702

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            PN+ T+N+L+D + +A+   +    ++ M +   SPN  TY+ L+    R +       
Sbjct: 703 TPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFV 762

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
            ++EM+++G+  +V  Y T++A  A VG   +A  +FE  K++    PD+ +F+++I   
Sbjct: 763 FWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGG-TPDAASFNALIEGM 821

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           S   +  EA  +F E    G   N+    SL+    KA+
Sbjct: 822 SHANRAIEAYHVFEETRLKGCRINVKACISLLDALNKAE 860



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 77/152 (50%), Gaps = 9/152 (5%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLP 216
           ++K S     Y++ +    + +  +KA   + +M  +G+ P+ VT++T+I+  A++ N+ 
Sbjct: 734 EMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNIT 793

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           + A   FER  + G  PDA +++++I+    A     A+ +++  R +  RI+  A  +L
Sbjct: 794 D-ACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKACISL 852

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           +     A N   CL   E+   +G   N + +
Sbjct: 853 LD----ALNKAECL---EQAAVVGFGENTVRH 877


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 161/328 (49%), Gaps = 4/328 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + Y+  +  F K    D A +L ++M D G++P    ++ L++     N  + A+  F
Sbjct: 229 DTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLF 288

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M    C PD  TY+ +I   G+AG ++ A+  +   + E  R D    + +I   G A
Sbjct: 289 EEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKA 348

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNT 342
           G  D  + +++EM  +   P+++TYN ++  +  +K R  +V + ++ M ++G+SP+  T
Sbjct: 349 GRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFT 408

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y+ L+  + +    E  + +  EM EKG       Y +L+         D A E+F+++K
Sbjct: 409 YSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK 468

Query: 403 SSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             ENC    S  ++ MI      G++ +A  MF+EM + G  P+++   +L+    +   
Sbjct: 469 --ENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGM 526

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
            D+ +  + R+ E G  PD      +LN
Sbjct: 527 LDEALSTMRRMQEHGCIPDINSYNIILN 554



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 3/296 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG-CDPDALTYS 239
           + KA  +F  +  R  +P    ++++I          K  E +  M + G C PD +TYS
Sbjct: 175 VSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYS 234

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           ++I A+ + G  + A  L +  ++   +     ++ L+ L+    +  G L+++EEM+  
Sbjct: 235 ALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQ 294

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
             +P++ TY  L+  +G+A R  +    + EM   G  P+     +++   G+A   +D 
Sbjct: 295 YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDA 354

Query: 360 LSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
           + +++EM       SV  YNT++ A+        E    FE MK S    P S+T+S +I
Sbjct: 355 MKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKES-GISPSSFTYSILI 413

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
                  ++ +A  +  EM E GF P      SLI   GKA+R D        L E
Sbjct: 414 DGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE 469



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 7/218 (3%)

Query: 137 IILNNMTN------PDTAALALTYFTNKLKASKEVILYNVTMK-VFRKCRDLDKAERLFD 189
           I++NNM N          A+ L      L+    V+ YN  +K +F       +    F+
Sbjct: 336 IVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFE 395

Query: 190 DMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
            M + G+ P + T+S LI      N   KA+   E M   G  P    Y S+IDA G+A 
Sbjct: 396 RMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAK 455

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
             ++A  L+   +          ++ +IK  G AG  D  +N+++EM  +G  P++  YN
Sbjct: 456 RYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYN 515

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
            L+  + R     +  +  + M ++G  P+ N+Y  +L
Sbjct: 516 ALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIIL 553



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 85/170 (50%), Gaps = 4/170 (2%)

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS-LLRAYGRARYGEDTLSVYRE 365
           TY  L+  +   ++  ++  + +EM  N +     T  S ++R  G A+     ++++ +
Sbjct: 125 TYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQ 184

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           +K +  Q +   YN+++ M    G  ++  E++ +M +  +C PD+ T+S++I+     G
Sbjct: 185 IKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLG 244

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           +   A  + NEM + G +P   + T L+  + K    +DV  AL+   E+
Sbjct: 245 RRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFK---LNDVHGALSLFEEM 291


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 152/312 (48%), Gaps = 1/312 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + ++V  +   +D+A R+   M D G  PD VT++ LI         + A+E F +M 
Sbjct: 267 YTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMK 326

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           +    PD +TY +M+D +   G++      +     + +  D   F+ L+     AGN D
Sbjct: 327 ASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNID 386

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              ++ + M+  GV PN+ TYN L+  + R  R      ++  M   G+ P   TY   +
Sbjct: 387 EAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFI 446

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YG++   +  L  + +MK +G+  ++   N  L   A++G   EA  IF  +KS+   
Sbjct: 447 DFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSN-GL 505

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PDS T++ M+   S  G+V EA  + ++M E   EP++ V+ SLI    KA R D+  +
Sbjct: 506 APDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWK 565

Query: 468 ALNRLPELGITP 479
              RL ++ + P
Sbjct: 566 MFCRLKDMKLAP 577



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 131/252 (51%), Gaps = 1/252 (0%)

Query: 166  ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
            I +N+ +    K   LDKA  LF D++     P   T+  L+     +    +A E FE 
Sbjct: 861  ITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEE 920

Query: 226  MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
            M  +GC P+   Y+ +I+ +G+ G+V  A  L+ R   E  R D  ++++L+     AG 
Sbjct: 921  MVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGR 980

Query: 286  FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
             D  L+ +E++K  G+  + I YN ++D +GR+ R  +  T+Y EM   G++P+  TY S
Sbjct: 981  VDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNS 1040

Query: 346  LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
            L+   G A   E    +Y E++  G++ +V  YN L+   +  G +D A+ +++ M    
Sbjct: 1041 LILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVG- 1099

Query: 406  NCQPDSWTFSSM 417
             C P++ TF+ +
Sbjct: 1100 GCSPNTGTFAQL 1111



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 152/326 (46%), Gaps = 1/326 (0%)

Query: 155  FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
            FT +L     +  YN  ++ F    + + A  LF +M + G  PD  T++ L+     + 
Sbjct: 780  FTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSG 839

Query: 215  LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
              N+  E +E+M    C P+ +T++ +I    ++ +++ A  L+    +  +   P  + 
Sbjct: 840  KINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYG 899

Query: 275  TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
             L+     +G  +    ++EEM   G +PN   YN L++  G+         ++K M   
Sbjct: 900  PLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVRE 959

Query: 335  GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
            G+ P+  +Y SL+     A   +D L  + ++K+ G+ L    YN ++         +EA
Sbjct: 960  GIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEA 1019

Query: 395  FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
              ++++M+ S    PD +T++S+I      G V +A  ++ E+   G EPN+F   +LI+
Sbjct: 1020 LTLYDEMQ-SRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIR 1078

Query: 455  CYGKAQRTDDVVRALNRLPELGITPD 480
             Y  +  +D       R+   G +P+
Sbjct: 1079 GYSMSGNSDSAYAVYKRMMVGGCSPN 1104



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 170/364 (46%), Gaps = 9/364 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +    +   LD A  LF++M   GV P   T+   I     +   +KA+E FE+M 
Sbjct: 407 YNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMK 466

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P+ +  ++ + +    G +  A  +++R ++     D   ++ ++K Y  AG  D
Sbjct: 467 IRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVD 526

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + +  +M     +P++I  N+L++T+ +A R  +   ++  + D  L+P   TY +L+
Sbjct: 527 EAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLI 586

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
              G+    +  + ++  M   G   +   +NT+L         D A ++   M ++ NC
Sbjct: 587 AGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKM-TTMNC 645

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD  TF+++I       +VS+A  +F++M +    P+   L +L+    K    +D  +
Sbjct: 646 MPDVLTFNTIIHGLVIEKRVSDAIWLFHQM-KKMLTPDCVTLCTLLPGVVKNGLMEDAFK 704

Query: 468 -ALNRLPELGITPDDRFCGCLL-NVMTQTPKEE---LGKLVEC--VEKSNSKLGYVVKLL 520
            A + +  LG+  D RF   L+  ++TQ   E+    G  + C  V K  S L  ++K+L
Sbjct: 705 IAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFGDRLVCGRVCKDGSVLMPIIKVL 764

Query: 521 LEEQ 524
            + +
Sbjct: 765 CKHK 768



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 114/234 (48%), Gaps = 2/234 (0%)

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           R G  +  F  + + R   + ++  +++ LI L   +G     L +Y  M   G+KP++ 
Sbjct: 172 RGGLRQTPFA-FGKMREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLK 230

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           T++ L+   G+ +    VK++ +EM   GL PN  TY   +R  GRA   ++   + + M
Sbjct: 231 TFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRM 290

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           ++ G    V  Y  L+      G  D+A E+F  MK+S + +PD  T+ +M+   S  G 
Sbjct: 291 EDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSH-KPDRVTYITMLDKFSDCGD 349

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +   +  ++EM   G+ P++   T L+    KA   D+    L+ + + G+ P+
Sbjct: 350 LGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPN 403



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 141/324 (43%), Gaps = 1/324 (0%)

Query: 188 FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
           F  M + G   +  +++ LI     + L  +A+E + RM   G  P   T+S+++ A G+
Sbjct: 182 FGKMREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGK 241

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
             + E    L +   +   + +   ++  I++ G AG  D    + + M+  G  P+++T
Sbjct: 242 RRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVT 301

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           Y  L+D +  A +      ++ +M  +   P+  TY ++L  +            + EM+
Sbjct: 302 YTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEME 361

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
             G    V  +  L+      G  DEAF + + M+  +   P+  T++++I+      ++
Sbjct: 362 ADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMR-KQGVLPNLHTYNTLISGLLRVNRL 420

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
            +A  +FN M   G  P  +     I  YGK+ R+D  +    ++   GI P+   C   
Sbjct: 421 DDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNAS 480

Query: 488 LNVMTQTPKEELGKLVECVEKSNS 511
           L  + +  +    K++    KSN 
Sbjct: 481 LYSLAEMGRLREAKVIFNRLKSNG 504



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 117/237 (49%), Gaps = 3/237 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++  N ++    +   L +A+ +F+ +   G+ PD+VT++ ++ C       ++A+E   
Sbjct: 474 IVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLS 533

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M    C+PD +  +S+I+   +AG V+ A+ ++ R ++ K       ++TLI   G  G
Sbjct: 534 DMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEG 593

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-PWQVKTIYKEMTDNGLSPNWNTY 343
                + ++  M   G  PN IT+N +LD + +       +K +YK  T N + P+  T+
Sbjct: 594 QVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCM-PDVLTF 652

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            +++      +   D + ++ +MK+      VTL  TLL      G  ++AF+I ED
Sbjct: 653 NTIIHGLVIEKRVSDAIWLFHQMKKMLTPDCVTLC-TLLPGVVKNGLMEDAFKIAED 708



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 157/407 (38%), Gaps = 82/407 (20%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           +K +  V+ YN  +    K   + +A  LF  M   G  P+ +TF+T++ C   N+  + 
Sbjct: 573 MKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDL 632

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A++   +M +  C PD LT++++I        V  A  L+ +    K  + P+  +    
Sbjct: 633 ALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQM---KKMLTPDCVTLCTL 689

Query: 279 LYGTAGN------------FDGCLNVYEE-------MKAI----GVKPNMITYNNL---- 311
           L G   N            F   L VY +       M  I    G +  ++  + L    
Sbjct: 690 LPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFGDRLVCGR 749

Query: 312 -----------LDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDT 359
                      +  + + K+    ++++   T   G+ P   +Y  L+  +      E  
Sbjct: 750 VCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMA 809

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI- 418
            +++ EMK  G    V  YN LL      G  +E FE++E M  S +C+P++ T + +I 
Sbjct: 810 WNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICS-SCKPNTITHNIIIA 868

Query: 419 -------------------------TICSC---------RGKVSEAEAMFNEMLEAGFEP 444
                                    T C+           G++ EA+ +F EM++ G  P
Sbjct: 869 NLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRP 928

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR----FCGCL 487
           N  +   LI  +GK    +       R+   GI PD +      GCL
Sbjct: 929 NNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCL 975


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 167/342 (48%), Gaps = 6/342 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + I Y+  +  F K    D A RLFD+M + G+ P    ++T+++     N    A+ 
Sbjct: 227 SPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALR 286

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             E M   GC P   TY+ +I   G+ G V+ A+ L+     +  + D    + LI + G
Sbjct: 287 LVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILG 346

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI-YKEMTDNGLSPNW 340
            AG  +  L ++ +M ++   PN++TYN ++  +  +K P     + +++M  NG++P+ 
Sbjct: 347 RAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSS 406

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TYA L+  + +    E  L +  EM EKG       Y +L+         + A E+F++
Sbjct: 407 FTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQE 466

Query: 401 MKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +K  ENC +  +  ++ MI      G++S+A  +F EM + G  P+++   +L+    +A
Sbjct: 467 LK--ENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRA 524

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT--PKEEL 499
              D+    +  + E G TPD +    +LN + +T  PK  +
Sbjct: 525 GMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAI 566



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 148/312 (47%), Gaps = 4/312 (1%)

Query: 151 ALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A + F N LK     +V+L N  + +  +   L+ A +LF  M      P+ VT++T+I 
Sbjct: 319 AYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIK 378

Query: 209 CARMNNLP-NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
               +  P ++A  WFE+M + G  P + TY+ +ID + +   VE A  L +    + + 
Sbjct: 379 AIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFP 438

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
             P A+ +LI   G A  ++    +++E+K    + +   Y  ++   G   R      +
Sbjct: 439 PCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDL 498

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           + EM   G SP+  TY +L+    RA   ++  S+ R M+E G    +  +N +L   A 
Sbjct: 499 FCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAK 558

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G    A E+F  MK SE   PD+ +++++++  S  G    A  +  EM   GFE +  
Sbjct: 559 TGGPKRAIEMFTKMKESE-IMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSI 617

Query: 448 VLTSLIQCYGKA 459
             +S+++  GK 
Sbjct: 618 TYSSILEAVGKV 629



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 139/305 (45%), Gaps = 3/305 (0%)

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG- 230
           +K+  K + ++KA  +F  +  R   P    ++TLI          K  E +  + S G 
Sbjct: 166 LKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGN 225

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           C PD +TYS++I A+G+    + AF L+D  +          ++T++ +Y      +  L
Sbjct: 226 CSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAAL 285

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            + EEMK  G  P + TY  L+  +G+  R     +++  M  +G  P+     +L+   
Sbjct: 286 RLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINIL 345

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQP 409
           GRA   ED L ++ +M       +V  YNT++ A+        EA   FE MK++    P
Sbjct: 346 GRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKAN-GIAP 404

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
            S+T++ +I       +V +A  +  EM E GF P      SLI   G+A+R +      
Sbjct: 405 SSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELF 464

Query: 470 NRLPE 474
             L E
Sbjct: 465 QELKE 469



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 150/320 (46%), Gaps = 12/320 (3%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAA------LALTYFTNKLKASKEVILYNV 170
           DD +S+   +  D  + D V+++NN+ N    A      L L    + L+ +  V+ YN 
Sbjct: 317 DDAYSLFFNMLKDGCKPD-VVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNT 375

Query: 171 TMK-VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
            +K +F       +A   F+ M   G+ P + T++ LI      N   KA+   E M   
Sbjct: 376 VIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEK 435

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
           G  P    Y S+ID+ GRA   E A  L+   +    R     ++ +IK +G  G     
Sbjct: 436 GFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDA 495

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           ++++ EMK +G  P++ TYN L+  M RA    +  ++ + M +NG +P+  ++  +L  
Sbjct: 496 VDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNG 555

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
             +    +  + ++ +MKE  +      YNT+L+  +  G  + A ++  +MK  +  + 
Sbjct: 556 LAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMK-LKGFEY 614

Query: 410 DSWTFSSMITICSCRGKVSE 429
           DS T+SS   I    GKV E
Sbjct: 615 DSITYSS---ILEAVGKVDE 631



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 143/320 (44%), Gaps = 8/320 (2%)

Query: 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF 203
           N   AAL L         +  V  Y   +K   K   +D A  LF +ML  G KPD V  
Sbjct: 279 NKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLI 338

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY--GRAGNVEMAFGLYDRA 261
           + LI+          A++ F +M S  C P+ +TY+++I A    +A   E A       
Sbjct: 339 NNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMK 398

Query: 262 RNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
            N    I P++F  + LI  +      +  L + EEM   G  P    Y +L+D++GRAK
Sbjct: 399 ANG---IAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAK 455

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
           R      +++E+ +N    +   YA +++ +G      D + ++ EMK+ G    V  YN
Sbjct: 456 RYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYN 515

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
            L++     G  DEA  +  +M+ +  C PD  + + ++   +  G    A  MF +M E
Sbjct: 516 ALMSGMIRAGMIDEAHSLMRNMREN-GCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKE 574

Query: 440 AGFEPNLFVLTSLIQCYGKA 459
           +   P+     +++ C  +A
Sbjct: 575 SEIMPDAVSYNTILSCLSRA 594



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 131/301 (43%), Gaps = 3/301 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +D+  R   DM+          +S ++       + NKA+  F ++    C+P A  Y++
Sbjct: 140 VDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNT 199

Query: 241 MIDAYGRAGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           +I      G+ E    LY+   +E     D   +S LI  +G    +D    +++EMK  
Sbjct: 200 LILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKEN 259

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G+ P    Y  +L    +  +      + +EM   G +P   TY  L++  G+    +D 
Sbjct: 260 GLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDA 319

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI- 418
            S++  M + G +  V L N L+ +    G  ++A ++F  M S + C P+  T++++I 
Sbjct: 320 YSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQ-CAPNVVTYNTVIK 378

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
            I   +   SEA   F +M   G  P+ F    LI  + K  R +  +  L  + E G  
Sbjct: 379 AIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFP 438

Query: 479 P 479
           P
Sbjct: 439 P 439



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 146/332 (43%), Gaps = 20/332 (6%)

Query: 199 DNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
           D+ T+  LI C   + L ++     + M    C      +S ++   G+A  V  A  ++
Sbjct: 123 DSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVF 182

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGR 317
            + +  K       ++TLI +    G+ +    +Y E+ + G   P+ ITY+ L+   G+
Sbjct: 183 YQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGK 242

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
            +R      ++ EM +NGL P    Y ++L  Y +    E  L +  EMK KG   +V  
Sbjct: 243 LERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFT 302

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           Y  L+     VG  D+A+ +F +M   + C+PD    +++I I    G++ +A  +F +M
Sbjct: 303 YTELIKGLGKVGRVDDAYSLFFNM-LKDGCKPDVVLINNLINILGRAGRLEDALKLFGKM 361

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQR-TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
                 PN+    ++I+   +++    +      ++   GI P       L++   +T +
Sbjct: 362 DSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNR 421

Query: 497 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 528
                    VEK+         LLLEE D +G
Sbjct: 422 ---------VEKA--------LLLLEEMDEKG 436


>gi|410110067|gb|AFV61113.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           herrerae]
          Length = 433

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 167/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 81  DLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVENKKFIEALSVF 140

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 141 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 198

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM + G+ PN  
Sbjct: 199 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSI 258

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   LY T++      G    A  +  ++
Sbjct: 259 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHEL 318

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           KS +N   D     + I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++
Sbjct: 319 KSPDNIPRD-----TAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKK 373

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 374 YANVVEVFDKMRGLGYFPDSNVIALVLN 401



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 15  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 74

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    +      +  ++STL+ +Y     F 
Sbjct: 75  RSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVENKKFI 134

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 135 EALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 194

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 195 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 253

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R
Sbjct: 254 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKR 313

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 314 LLHELKSPDNIPRD 327



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 139/292 (47%), Gaps = 1/292 (0%)

Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
           D+M +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   + 
Sbjct: 1   DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
            +   A  ++ R +   +  D  A++ +I ++G A  F     +  EMK  GV PN  +Y
Sbjct: 61  CDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASY 120

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           + LL      K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M++
Sbjct: 121 STLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  
Sbjct: 181 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHE 239

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +A  +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 240 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 291



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 206 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 265

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + Y +MI AY RAG V  A     R  +E    
Sbjct: 266 IWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHA----KRLLHELKSP 321

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 322 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKKYANVVEVF 381

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 382 DKMRGLGYFPDSNVIALVLNAYGKLHELDKANDVYMEMQEVG 423



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 1/164 (0%)

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           EM +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   + 
Sbjct: 2   EMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 61

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
              +A  IF  +K S    PD   +++MI +        EA A+ +EM  AG  PN    
Sbjct: 62  DYSKAISIFSRLKRS-GFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASY 120

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           ++L+  Y + ++  + +   + + E+    D   C  +++V  Q
Sbjct: 121 STLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 164



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 36/232 (15%)

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
           D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++     
Sbjct: 1   DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIE----- 55

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
                   + +++ D                Y +A      +S++  +K  G    +  Y
Sbjct: 56  --------LSRKLCD----------------YSKA------ISIFSRLKRSGFMPDLVAY 85

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           N ++ +        EA  +  +MK++    P++ ++S+++T+     K  EA ++F+EM 
Sbjct: 86  NAMINVFGKAKLFREARALISEMKTA-GVMPNTASYSTLLTMYVENKKFIEALSVFSEMR 144

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
           E     +L     +I  YG+     +  +    + ++GI P+      LL V
Sbjct: 145 EIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRV 196



 Score = 44.7 bits (104), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           EM+E+ +      Y+TL+      G  D A    + M+  +    D   +S++I +    
Sbjct: 2   EMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ-DRVPGDLVLYSNLIELSRKL 60

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
              S+A ++F+ +  +GF P+L    ++I  +GKA+   +    ++ +   G+ P+    
Sbjct: 61  CDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASY 120

Query: 485 GCLLNVMTQTPK 496
             LL +  +  K
Sbjct: 121 STLLTMYVENKK 132


>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 169/344 (49%), Gaps = 3/344 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +  YN  ++V  K   L +AE  F DM  +G+ P   TF+ +I+        +KA + F 
Sbjct: 162 IATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFR 221

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M    C P+  TY+++++A+ R GN   A  ++   ++  +  D   ++ L++ Y    
Sbjct: 222 SMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGE 281

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           +  G   V++ M   GV+P+ ++YN L+D  GRA      + +Y  M + G  P   ++ 
Sbjct: 282 HPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHM 341

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            LL +Y +A    +   + RE++  G++    ++N+LL+   + G  DE   + E M SS
Sbjct: 342 LLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSS 401

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              +PD  T +++I   +  G + +AE +FN +   G  P++   TSL+  Y + +    
Sbjct: 402 V-AKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQRKLFRK 460

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 508
            V    ++ + G  PD       L+   ++P E++ ++ + +E+
Sbjct: 461 CVSIFQKMVKAGCIPDRATAKVFLSS-CRSP-EQVKEVTDMIER 502



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 161/324 (49%), Gaps = 14/324 (4%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNV---------TFSTLISCARMNNLPNK 218
           +NV +  + +   L+KAE+LF +M +    P  V         T++T +     +   ++
Sbjct: 121 FNVLLAAYSRGVQLEKAEKLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQ 180

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTL 276
           A + F  M   G  P   T++ MI+ YG+A   + A  L+   R  K    PN   ++ L
Sbjct: 181 AEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMR--KALCPPNLYTYTAL 238

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           +  +   GN      ++ E++++G  P++ TYN LL+   R + P   K +++ M + G+
Sbjct: 239 MNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGV 298

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            P+  +Y  L+ A+GRA    D  +VY  MKE G + ++  +  LL+  A  G   EA  
Sbjct: 299 RPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAER 358

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           +  ++++S   +PD++ F+S+++     G++ E E++   M+ +  +P++  L +LI  Y
Sbjct: 359 LVREIENS-GVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAY 417

Query: 457 GKAQRTDDVVRALNRLPELGITPD 480
            +    +      N L   G+TPD
Sbjct: 418 AQGGYIEKAEEVFNSLESKGLTPD 441



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 175/389 (44%), Gaps = 14/389 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV-KPDNVTFSTLISCARMNNLPNKAVEW 222
           E I+ NV     R+ R+      + + +L   + KPD   F+ LI     +    +A + 
Sbjct: 48  EAIMENVAE--LRRLRNWRSVILILEWILQGTMFKPDVGCFNMLIDAYGKSKQWREAEKT 105

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE-------KWRIDPN--AF 273
           F  M  F C P   +++ ++ AY R   +E A  L+   +         +W I      +
Sbjct: 106 FHLMKDFQCLPTETSFNVLLAAYSRGVQLEKAEKLFHEMKESNYSPGTVEWMIFSGIATY 165

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           +T +++ G +G      + + +M+  G+ P + T+  +++  G+A    +   +++ M  
Sbjct: 166 NTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRK 225

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
               PN  TY +L+ A+ R         ++ E++  G    V  YN LL   +   +   
Sbjct: 226 ALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTG 285

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A E+F+ M  +   +PD  +++ +I      G  ++A+A+++ M EAGF+P +     L+
Sbjct: 286 AKEVFQAMVEA-GVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLL 344

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 512
             Y KA +  +  R +  +   G+ PD      LL+    + + +E+  L+E +  S +K
Sbjct: 345 SSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAK 404

Query: 513 LGYVVKLLLEEQDIEGDFKKEATELFNSI 541
                   L     +G + ++A E+FNS+
Sbjct: 405 PDISTLNTLINAYAQGGYIEKAEEVFNSL 433



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 101/207 (48%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  YN  ++ + +      A+ +F  M++ GV+PD V+++ LI       L   A   +
Sbjct: 266 DVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVY 325

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   G  P   ++  ++ +Y +AG V  A  L     N   + D   F++L+  YG +
Sbjct: 326 DSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNS 385

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D   ++ E M +   KP++ T N L++   +     + + ++  +   GL+P+  ++
Sbjct: 386 GRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSW 445

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKG 370
            SL+ AY + +     +S++++M + G
Sbjct: 446 TSLMGAYAQRKLFRKCVSIFQKMVKAG 472



 Score = 42.4 bits (98), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 40/77 (51%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A  ++   N  +  + +   ++KAE +F+ +  +G+ PD +++++L+       L  K V
Sbjct: 403 AKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQRKLFRKCV 462

Query: 221 EWFERMPSFGCDPDALT 237
             F++M   GC PD  T
Sbjct: 463 SIFQKMVKAGCIPDRAT 479


>gi|410110149|gb|AFV61154.1| pentatricopeptide repeat-containing protein 123, partial
           [Xeroaloysia ovatifolia]
          Length = 431

 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 167/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  +++TL++    N    +A+  F
Sbjct: 81  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYVENKKFLEALSVF 140

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 141 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 198

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   +  N++TYN+++   G+     +   + +EM + G+ PN  
Sbjct: 199 DAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSI 258

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+A   +    ++++++  G+++   LY T++      G    A  +  ++
Sbjct: 259 TYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYEKAGLVAHAKRLLHEL 318

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           KS +N   D     + I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++
Sbjct: 319 KSPDNIPRD-----TAIHILAGAGRIEEATYVFRQAIDAGEVRDITVFERMIHLFSKYKK 373

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 374 YANVVEVFDKMRGLGYFPDSNVIALVLN 401



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 148/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 15  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 74

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  +++TL+ +Y     F 
Sbjct: 75  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYVENKKFL 134

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 135 EALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 194

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K +  +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 195 RVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 253

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y KA       R
Sbjct: 254 EPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYEKAGLVAHAKR 313

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 314 LLHELKSPDNIPRD 327



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 139/292 (47%), Gaps = 1/292 (0%)

Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
           D+M +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   + 
Sbjct: 1   DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
            +   A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
             LL      K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M++
Sbjct: 121 TTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G++ +V  YNTLL +  D     EA  +F  M+  +N   +  T++SM+ I     +  
Sbjct: 181 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIVQNVVTYNSMMMIYGKTLEHE 239

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +A  +  EM   G EPN    +++I  +GKA + D       +L   G+  D
Sbjct: 240 KANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEID 291



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 206 AIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 265

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + Y +MI AY +AG V  A     R  +E    
Sbjct: 266 IWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYEKAGLVAHA----KRLLHELKSP 321

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 322 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVRDITVFERMIHLFSKYKKYANVVEVF 381

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 382 DKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQEVG 423



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 1/164 (0%)

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           EM +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   + 
Sbjct: 2   EMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 61

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
              +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    
Sbjct: 62  DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           T+L+  Y + ++  + +   + + E+    D   C  +++V  Q
Sbjct: 121 TTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 164



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/232 (19%), Positives = 96/232 (41%), Gaps = 36/232 (15%)

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
           D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   + 
Sbjct: 1   DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
               +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EM+  G        
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAG-------- 112

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
                                         P++ ++++++T+     K  EA ++F+EM 
Sbjct: 113 ----------------------------VMPNTASYTTLLTMYVENKKFLEALSVFSEMR 144

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
           E     +L     +I  YG+     +  +    + ++GI P+      LL V
Sbjct: 145 EIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRV 196



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           EM+E+ +      Y+TL+      G  D A    + M+  +    D   +S++I +    
Sbjct: 2   EMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ-DRVPGDLVLYSNLIELSRKL 60

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
              S+A ++F+ +  +GF P+L    ++I  +GKA+   +    ++ +   G+ P+    
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120

Query: 485 GCLLNVMTQTPK 496
             LL +  +  K
Sbjct: 121 TTLLTMYVENKK 132


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 169/336 (50%), Gaps = 1/336 (0%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A   ++    +  A   ++ +N  +    K   ++ A ++FD+M+  G+ PD V+++T
Sbjct: 204 DGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNT 263

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           L+S        ++++  F  M   G  PD +T++S+I A  +AGN+E A  L  + R   
Sbjct: 264 LLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERG 323

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
            R++   F+ LI  +   G  D  L   EEM+  G++P+++ YN L++   +  R    +
Sbjct: 324 LRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLAR 383

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM    + P+  TY++++  Y +    +    + ++M +KG+      Y++L+   
Sbjct: 384 ELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL 443

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            +    ++A E+FE+M      QPD +T++++I      G V +A ++ +EM+  G  P+
Sbjct: 444 CEEKRLNDACELFENMLQL-GVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 502

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +   + LI    K+ RT +  R L +L      PD+
Sbjct: 503 VVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDN 538



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 160/340 (47%), Gaps = 43/340 (12%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           L  A R    ML  GV P+  T++ L+   CAR      +AV     M   GC P+A+TY
Sbjct: 133 LPSARRFLSSMLRHGVAPNVYTYNILVRALCAR--GRLEEAVGVVGDMRGAGCAPNAVTY 190

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEM 296
           ++++ A+ RAG ++ A  +    R E+    PN   F++++     AG  +G   V++EM
Sbjct: 191 NTLVAAFCRAGELDGAERVVSLMR-EEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEM 249

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
              G+ P++++YN LL    +     +   ++ EMT  GL P+  T+ SL+ A  +A   
Sbjct: 250 VREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNL 309

Query: 357 EDTLSVYREMKEKGMQL-----------------------------------SVTLYNTL 381
           E  +++  +M+E+G+++                                   SV  YN L
Sbjct: 310 EQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNAL 369

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           +     +G  D A E+  +M+ ++  +PD  T+S++I+     G +  A  +  +ML+ G
Sbjct: 370 INGYCKLGRMDLARELIREME-AKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 428

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
             P+    +SLI+   + +R +D       + +LG+ PD+
Sbjct: 429 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDE 468



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 152/332 (45%), Gaps = 16/332 (4%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   +    K  +L++A  L   M +RG++ + VTF+ LI         + A+   
Sbjct: 292 DVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAV 351

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  P  + Y+++I+ Y + G +++A  L      ++ + D   +ST+I  Y   
Sbjct: 352 EEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKV 411

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           GN D    + ++M   GV P+ ITY++L+  +   KR      +++ M   G+ P+  TY
Sbjct: 412 GNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTY 471

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+  + +    E  LS++ EM  KG+   V  Y+ L+   +    T EA  +   +  
Sbjct: 472 TTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL-Y 530

Query: 404 SENCQPDSWTFSSMITICS---------------CRGKVSEAEAMFNEMLEAGFEPNLFV 448
            E+  PD+  + +++  CS                +G + EA+ ++  ML+  ++ +  V
Sbjct: 531 HEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSV 590

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            + LI  + +       +    ++   G +P+
Sbjct: 591 YSILIHGHCRGGNVRKALSFHKQMLRSGFSPN 622



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 3/182 (1%)

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGED 358
           G  P++  YN +L  +  A  P   +     M  +G++PN  TY  L+RA   R R  E+
Sbjct: 113 GYAPSVPAYNAVLLALSDASLP-SARRFLSSMLRHGVAPNVYTYNILVRALCARGRL-EE 170

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            + V  +M+  G   +   YNTL+A     G  D A  +   M+   N +P+  TF+SM+
Sbjct: 171 AVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMV 230

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 G++  A  +F+EM+  G  P++    +L+  Y K     + +   + + + G+ 
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLV 290

Query: 479 PD 480
           PD
Sbjct: 291 PD 292


>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 913

 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 166/359 (46%), Gaps = 36/359 (10%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           +I Y   + ++ K   + KA  +  +M   G+K +N T+S LIS    +++  N A   F
Sbjct: 452 IISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTN-AFRIF 510

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  PD   Y+ +I+A+ + GN++ A  + ++ + E+ +    AF  +I+ +  A
Sbjct: 511 EEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVA 570

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+    L++ + M+  G  P ++TYN L+  + R  +  +  ++  +M+  G++PN +TY
Sbjct: 571 GDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTY 630

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++R Y            + ++KE G++L V +Y TLL  C   G    A  +  +M S
Sbjct: 631 TIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSS 690

Query: 404 SE--------NCQPDSW--------------------------TFSSMITICSCRGKVSE 429
            +        N   D W                          T++S I  C   G +  
Sbjct: 691 QKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQR 750

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           A+ + +EM + G +PNL   T+LI+ + +A   D  ++    +   G+ PD+    CL+
Sbjct: 751 AQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLV 809



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 147/349 (42%), Gaps = 36/349 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           + + +  + K  D   A   F++M  RG++P+   F++L+    +      A+   E M 
Sbjct: 280 FGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCTEEMK 339

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G +   +TYS +I  +G+  + + A  L+  A+     ++   +S +I  +  +GN D
Sbjct: 340 AEGIELTIVTYSILISGFGKINDTQSADNLFKEAKTNLGDLNGIIYSNIIHAHCQSGNMD 399

Query: 288 -----------------------------------GCLNVYEEMKAIGVKPNMITYNNLL 312
                                               CL V+E +K     P++I+Y  L+
Sbjct: 400 RAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLI 459

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           +   +  +  +   I KEM  +G+  N  TY+ L+  +       +   ++ EM + G+Q
Sbjct: 460 NLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQ 519

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
               +YN L+     +G  D A  I E M+  E  QP +  F  +I   +  G +  A  
Sbjct: 520 PDRAIYNLLIEAFCKMGNMDRAIRILEKMQ-KERMQPSNRAFRPIIEGFAVAGDMKRALD 578

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           + + M  +G  P +    +LI    +  + +  V  LN++   GITP++
Sbjct: 579 ILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNE 627



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 116/251 (46%), Gaps = 1/251 (0%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D+ +A  + D M   G  P  +T++ LI      N   +AV    +M   G  P+  TY+
Sbjct: 572 DMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYT 631

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            ++  Y   G++  AF  + + +    ++D   + TL++    +G     L V  EM + 
Sbjct: 632 IIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQ 691

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
            +  N   YN L+D   R    W+   + K+M ++G+ PN +TY S + A  +A   +  
Sbjct: 692 KIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRA 751

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
            +V  EM + G++ ++  Y TL+   A     D A + FE+MK +   +PD   +  ++T
Sbjct: 752 QTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLA-GLKPDEAAYHCLVT 810

Query: 420 ICSCRGKVSEA 430
               R  V E 
Sbjct: 811 SLLSRATVMEG 821



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 134/291 (46%), Gaps = 1/291 (0%)

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
            +R  KP    F  +I         + A   FE M + G +P+A  ++S++ AY  A ++
Sbjct: 269 FERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDM 328

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
             A    +  + E   +    +S LI  +G   +     N+++E K      N I Y+N+
Sbjct: 329 RGALSCTEEMKAEGIELTIVTYSILISGFGKINDTQSADNLFKEAKTNLGDLNGIIYSNI 388

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +    ++    + + +  EM ++G+    + Y S++  Y   +  +  L V+  +KE   
Sbjct: 389 IHAHCQSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCF 448

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
             S+  Y  L+ +   +G   +A  I ++M+SS   + ++ T+S +I+        + A 
Sbjct: 449 TPSIISYGCLINLYVKIGKVAKAIAISKEMESS-GIKHNNKTYSMLISGFIHLHDFTNAF 507

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
            +F EML++G +P+  +   LI+ + K    D  +R L ++ +  + P +R
Sbjct: 508 RIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNR 558



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 6/214 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + M+ +    D+ KA   F  + + G+K D   + TL+     +     A+     M 
Sbjct: 630 YTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMS 689

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S     +   Y+ +ID + R G+V  A  L  + + +    + + +++ I     AG+  
Sbjct: 690 SQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQ 749

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V +EM  +G+KPN+ TY  L+    RA  P +    ++EM   GL P+   Y  L+
Sbjct: 750 RAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLV 809

Query: 348 RA-YGRARYGEDT-----LSVYREMKEKGMQLSV 375
            +   RA   E +     LSV REM E  + + +
Sbjct: 810 TSLLSRATVMEGSTYTGILSVCREMFENDLTVDM 843


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 152/313 (48%), Gaps = 1/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  M    K RD +    L  +M D G++P+  TF+  I         ++A E F RM 
Sbjct: 230 YSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMD 289

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC PD +TY+ +IDA   AG +E A  L+ + +    + D   + TL+  +   G+ D
Sbjct: 290 DEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLD 349

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
                + +M+A G  P+++T+  L+D + +A+   +    +  M   G+ PN +TY +L+
Sbjct: 350 TFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLI 409

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               RA   ED L +   M+  G+Q +   YN  +      G T +A E FE MK ++  
Sbjct: 410 CGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMK-AKGI 468

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+    ++ +   +  G++ EA+ MFN + E G  P+      +++CY K  + D+ V 
Sbjct: 469 VPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVN 528

Query: 468 ALNRLPELGITPD 480
            L+ +   G  PD
Sbjct: 529 LLSEMIRNGCEPD 541



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 154/315 (48%), Gaps = 1/315 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  + + ++V  +   +D+A  +F  M D G  PD VT++ LI           A E F 
Sbjct: 262 VYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFV 321

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M + G  PD + Y +++D +   G+++     + +   + +  D   F+ L+ +   A 
Sbjct: 322 KMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKAR 381

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           +FD     ++ M+  G+ PN+ TYN L+  + RA R      +   M   G+ P   TY 
Sbjct: 382 DFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYN 441

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
             +  +G++      +  + +MK KG+  ++   N  L   A++G   EA  +F  ++ +
Sbjct: 442 IFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLREN 501

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               PDS T++ M+   S  G+V EA  + +EM+  G EP++ V+ SLI    KA R D+
Sbjct: 502 -GLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDE 560

Query: 465 VVRALNRLPELGITP 479
             +  +R+ ++ ++P
Sbjct: 561 AWQMFDRMKDMKLSP 575



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 151/326 (46%), Gaps = 1/326 (0%)

Query: 155  FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
            FT KL  S  +  YN  +    +    +KA  LF DM + G  PD  TF+ L++    + 
Sbjct: 778  FTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSG 837

Query: 215  LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
               +  E ++ M S  C PDA+TY+ +I +  ++ N++ A   +    +  +R  P  + 
Sbjct: 838  KITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYG 897

Query: 275  TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
             LI      G  +  + ++EEM   G KPN   +N L++  G+         ++K M + 
Sbjct: 898  PLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNE 957

Query: 335  GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
            G+ P+  +Y  L+     A   ++ L  + E+K  G+      YN ++         +EA
Sbjct: 958  GIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEA 1017

Query: 395  FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
              ++ +M+ +    PD +T++S++      G V +A+ M+ E+  AG EP++F   +LI+
Sbjct: 1018 LALYNEMR-NRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIR 1076

Query: 455  CYGKAQRTDDVVRALNRLPELGITPD 480
             Y  ++  +        +   G  P+
Sbjct: 1077 GYSLSENPEHAYTVYKNMMVDGCNPN 1102



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 135/259 (52%), Gaps = 3/259 (1%)

Query: 160  KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNK 218
            +   + I YN+ +    K  +LDKA   F D++    +P   T+  LI   A++  L  +
Sbjct: 853  RCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRL-EE 911

Query: 219  AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
            A+  FE M  +GC P+   ++ +I+ YG+ G+ E A  L+ R  NE  R D  +++ L+ 
Sbjct: 912  AMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVD 971

Query: 279  LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
                AG  D  L  + E+K+ G+ P+ I YN +++ +G+++R  +   +Y EM + G+ P
Sbjct: 972  CLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVP 1031

Query: 339  NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
            +  TY SL+   G A   E    +Y E++  G++  V  YN L+   +     + A+ ++
Sbjct: 1032 DLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVY 1091

Query: 399  EDMKSSENCQPDSWTFSSM 417
            ++M   + C P+  T++ +
Sbjct: 1092 KNM-MVDGCNPNIGTYAQL 1109



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 147/280 (52%), Gaps = 3/280 (1%)

Query: 168  YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERM 226
            +N+ + V  K   + +   L+ +M+ R  KPD +T++ +IS  A+ NNL +KA+++F  +
Sbjct: 826  FNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNL-DKALDFFYDL 884

Query: 227  PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
             S    P   TY  +ID   + G +E A  L++   +   + +   F+ LI  YG  G+ 
Sbjct: 885  VSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDT 944

Query: 287  DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
            +    +++ M   G++P++ +Y  L+D +  A R  +    + E+   GL P++  Y  +
Sbjct: 945  ETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRI 1004

Query: 347  LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
            +   G+++  E+ L++Y EM+ +G+   +  YN+L+      G  ++A  ++E+++ +  
Sbjct: 1005 INGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLA-G 1063

Query: 407  CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             +PD +T++++I   S       A  ++  M+  G  PN+
Sbjct: 1064 LEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNI 1103



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 176/387 (45%), Gaps = 15/387 (3%)

Query: 132 EQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILY-----NVTMKVFRKCRDLDKAER 186
           E + + +L +MT+P     AL+YF +   +    +L+     N  ++  R    ++    
Sbjct: 89  EDEVLGVLKSMTDP---IRALSYFYSI--SEFPTVLHTTETCNFMLEFLRVHDKVEDMAA 143

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           +F+ M  + ++ D  T+ T+     +     +      +M   G   +A +Y+ +I    
Sbjct: 144 VFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLI 203

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           ++G    A  +Y R  +E  +     +S L+   G   + +  + + +EM+ +G++PN+ 
Sbjct: 204 QSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVY 263

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           T+   +  +GRA +  +   I++ M D G  P+  TY  L+ A   A   E+   ++ +M
Sbjct: 264 TFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKM 323

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRG 425
           K  G +    +Y TLL    D G  D   E +  M+ ++   PD  TF+ ++  +C  R 
Sbjct: 324 KANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQME-ADGYMPDVVTFTILVDVLCKAR- 381

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 485
              EA A F+ M + G  PNL    +LI    +A R +D ++ L  +  +G+ P      
Sbjct: 382 DFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYN 441

Query: 486 CLLNVMTQTPKEELGKLVECVEKSNSK 512
             ++   ++   E GK VE  EK  +K
Sbjct: 442 IFIDYFGKSG--ETGKAVETFEKMKAK 466



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 159/349 (45%), Gaps = 5/349 (1%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           +K S  V+ YN  +    K   + KA  LF+ M+++   P+ ++F+TL+ C   N+    
Sbjct: 571 MKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVEL 630

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A++ F +M    C PD LTY+++I    +   V  AF  + + + +    D     TL+ 
Sbjct: 631 ALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLK-KSMHPDHVTICTLLP 689

Query: 279 LYGTAGNFDGCLNVYEE-MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
                G     +++  + M  +  + N   + +L+          +     +E+  NG+ 
Sbjct: 690 GLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGIC 749

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLAMCADVGYTDEAFE 396
              +    L+R   + +       ++ +  +K G+  ++  YN L+    +V YT++A++
Sbjct: 750 REDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWD 809

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           +F+DMK+   C PD++TF+ ++ +    GK++E   ++ EM+    +P+      +I   
Sbjct: 810 LFKDMKNV-GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSL 868

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 504
            K+   D  +     L      P  R  G L++ + +  + EE  +L E
Sbjct: 869 AKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFE 917



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 149/341 (43%), Gaps = 43/341 (12%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI----SCARMNNL---- 215
           +V+ + + + V  K RD D+A   FD M  +G+ P+  T++TLI       R+ +     
Sbjct: 366 DVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLL 425

Query: 216 ---------------------------PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
                                        KAVE FE+M + G  P+ +  ++ + +    
Sbjct: 426 GTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEM 485

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           G +  A  +++  R      D   ++ ++K Y   G  D  +N+  EM   G +P++I  
Sbjct: 486 GRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVV 545

Query: 309 NNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           N+L+D++   GR    WQ   ++  M D  LSP   TY +LL   G+    +  + ++  
Sbjct: 546 NSLIDSLYKAGRVDEAWQ---MFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFES 602

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M EK    +   +NTLL         + A ++F  M +  +C+PD  T++++I       
Sbjct: 603 MIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKM-TVMDCKPDVLTYNTVIYGLIKEN 661

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
           KV+ A   F++ L+    P+   + +L+    K  +  D +
Sbjct: 662 KVNHAFWFFHQ-LKKSMHPDHVTICTLLPGLVKCGQIGDAI 701



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 167/389 (42%), Gaps = 15/389 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF-STLISCARMNNLPNKAVEWFERM 226
           YN+ +  F K  +  KA   F+ M  +G+ P+ V   ++L S A M  L  +A   F  +
Sbjct: 440 YNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRL-REAKTMFNGL 498

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G  PD++TY+ M+  Y + G V+ A  L           D    ++LI     AG  
Sbjct: 499 RENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRV 558

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++ MK + + P ++TYN LL  +G+  R  +   +++ M +   SPN  ++ +L
Sbjct: 559 DEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTL 618

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L  + +    E  L ++ +M     +  V  YNT++         + AF  F  +K S  
Sbjct: 619 LDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKS-- 676

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNE-MLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             PD  T  +++      G++ +A ++  + M +  F  N      L+         D  
Sbjct: 677 MHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKA 736

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKL----LL 521
           +     L   GI  +D F   L+ V+ +  +E      +  +K   KLG    L     L
Sbjct: 737 IIFAEELVLNGICREDSFLIPLVRVLCKHKRELYA--YQIFDKFTKKLGISPTLASYNCL 794

Query: 522 EEQDIEGDFKKEATELFNSISKDVKKAYC 550
             + +E  + ++A +LF    KD+K   C
Sbjct: 795 IGELLEVHYTEKAWDLF----KDMKNVGC 819


>gi|255661186|gb|ACU25762.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 426

 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 167/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  +++TL++    N    +A+  F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYVENKKFLEALSVF 137

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 138 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 195

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   +  N++TYN+++   G+     +   + +EM + G+ PN  
Sbjct: 196 DAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSI 255

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+A   +    ++++++  G+++   LY T++      G    A  +  ++
Sbjct: 256 TYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYEKAGLVAHAKRLLHEL 315

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           KS +N   D     + I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++
Sbjct: 316 KSPDNIPRD-----TAIHILAGAGRIEEATYVFRQAIDAGEVRDITVFERMIHLFSKYKK 370

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 371 YANVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 148/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  +++TL+ +Y     F 
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K +  +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y KA       R
Sbjct: 251 EPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYEKAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKSPDNIPRD 324



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 136/288 (47%), Gaps = 1/288 (0%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +  
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y  LL
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLL 121

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                 K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++
Sbjct: 122 TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNTLL +  D     EA  +F  M+  +N   +  T++SM+ I     +  +A  
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIVQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM   G EPN    +++I  +GKA + D       +L   G+  D
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEID 288



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + Y +MI AY +AG V  A     R  +E    
Sbjct: 263 IWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYEKAGLVAHA----KRLLHELKSP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVRDITVFERMIHLFSKYKKYANVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQEVG 420



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 78/161 (48%), Gaps = 1/161 (0%)

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    T+L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTL 120

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           +  Y + ++  + +   + + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 94/222 (42%), Gaps = 36/222 (16%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G                  
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAG------------------ 109

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
                               P++ ++++++T+     K  EA ++F+EM E     +L  
Sbjct: 110 ------------------VMPNTASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTT 151

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
              +I  YG+     +  +    + ++GI P+      LL V
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRV 193



 Score = 40.4 bits (93), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 58/130 (44%), Gaps = 1/130 (0%)

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           +E+ +      Y+TL+      G  D A    + M+  +    D   +S++I +      
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ-DRVPGDLVLYSNLIELSRKLCD 59

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            S+A ++F+ +  +GF P+L    ++I  +GKA+   +    ++ +   G+ P+      
Sbjct: 60  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTT 119

Query: 487 LLNVMTQTPK 496
           LL +  +  K
Sbjct: 120 LLTMYVENKK 129


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 148/317 (46%), Gaps = 37/317 (11%)

Query: 165 VILYNVTMKVFRKC-RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +I YNV + V+ K      K   L   M   GV PD+ T++TLISC R  +L  +A + F
Sbjct: 252 LITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVF 311

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  PD +T+++++D YG++   + A                             
Sbjct: 312 EEMKLSGFSPDKVTFNTLLDVYGKSRRPKEA----------------------------- 342

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                 + V +EM+  G  P+++TYN+L+    R     +   +  +M + G+ P+  TY
Sbjct: 343 ------MEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTY 396

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +LL  + +A   E  + ++ EM+  G + ++  +N L+ M  + G   E  ++FE+++ 
Sbjct: 397 TTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEI 456

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
             NC PD  T+++++ +    G  SE   +F EM  AGF P      +LI  Y +     
Sbjct: 457 C-NCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQ 515

Query: 464 DVVRALNRLPELGITPD 480
             +    R+ E G+TPD
Sbjct: 516 QAMAVYKRMLEAGVTPD 532



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 166/353 (47%), Gaps = 37/353 (10%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + + +N  + V+ K R   +A  +  +M   G  P  VT+++LIS    + L  +A+E
Sbjct: 320 SPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAME 379

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             ++M   G  PD  TY++++  + +AG  E A  ++   R    + +   F+ LIK++G
Sbjct: 380 LKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHG 439

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G F   + V+EE++     P+++T+N LL   G+     +V  ++KEM   G  P  +
Sbjct: 440 NRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERD 499

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+ +L+ AY R    +  ++VY+ M E G+   ++ YN +LA  A  G  +++ ++F +M
Sbjct: 500 TFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEM 559

Query: 402 KSSENCQPDSWTFSSMI--------------------------------TICSCRGK--- 426
           K    C+P+  T+ S++                                T+     K   
Sbjct: 560 KDGR-CKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDL 618

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           + E E  F E+ + G  P+L  L ++I  YG+ Q        LN + E G +P
Sbjct: 619 LMETEHAFEELKKKG-SPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSP 670



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 149/317 (47%), Gaps = 2/317 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y   +  F K    + A R+F +M   G KP+  TF+ LI          + ++ F
Sbjct: 392 DVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVF 451

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E +    C PD +T+++++  +G+ G      G++   +   +  + + F+TLI  Y   
Sbjct: 452 EEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRC 511

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+F   + VY+ M   GV P++ +YN +L  + R     Q + ++ EM D    PN  TY
Sbjct: 512 GSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTY 571

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            SLL AY  ++  E   ++  E+     +    L  TL+ + +      E    FE++K 
Sbjct: 572 CSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELK- 630

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +   PD  T ++MI I   R  V++A  + N M E+GF P+L    SL+  + +++  +
Sbjct: 631 -KKGSPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFE 689

Query: 464 DVVRALNRLPELGITPD 480
                L  +   G+ PD
Sbjct: 690 RSEEVLKEILAKGLKPD 706



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 138/308 (44%), Gaps = 37/308 (12%)

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
           W      F    +    + +I   G+ G V  A  + +  R + + +D  A+++LI  Y 
Sbjct: 169 WVREREDFESVLNCSVVAVIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYA 228

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW------------------- 322
           + G +   + V+++M+  G KP +ITYN +L+  G+   PW                   
Sbjct: 229 SNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDD 288

Query: 323 -----------------QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
                            +   +++EM  +G SP+  T+ +LL  YG++R  ++ + V +E
Sbjct: 289 YTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKE 348

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M+  G   S+  YN+L++  A  G   EA E+ +D    +  +PD +T++++++     G
Sbjct: 349 MEFSGFSPSIVTYNSLISAYARDGLLREAMEL-KDQMVEKGIKPDVFTYTTLLSGFEKAG 407

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 485
               A  +F EM  AG +PN+    +LI+ +G   R  ++++    +      PD     
Sbjct: 408 MDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWN 467

Query: 486 CLLNVMTQ 493
            LL V  Q
Sbjct: 468 TLLAVFGQ 475



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/285 (20%), Positives = 118/285 (41%), Gaps = 35/285 (12%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N  +  + +C    +A  ++  ML+ GV PD  +++ +++      L  ++ + F  M 
Sbjct: 501 FNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMK 560

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN------------------------ 263
              C P+ LTY S++ AY  +  +E    L +   +                        
Sbjct: 561 DGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLM 620

Query: 264 ----------EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
                     +K   D +  + +I +YG          +   M   G  P++ TYN+L+ 
Sbjct: 621 ETEHAFEELKKKGSPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMY 680

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
              R++   + + + KE+   GL P+  +Y +++ AY R    +D   ++  MK  G+  
Sbjct: 681 MHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVP 740

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            V  YNT +A  A     ++A  +   M     C+ +  T++S++
Sbjct: 741 DVITYNTFVASYAADSLFEDAIGVVRYM-IKHGCKRNQNTYNSIV 784



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 99/217 (45%), Gaps = 1/217 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   +  +   +++++   L +++     +P  V   TL+      +L  +    FE 
Sbjct: 569 LTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEE 628

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +   G  PD  T ++MI  YGR   V  A  + +      +      +++L+ ++  + N
Sbjct: 629 LKKKG-SPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSEN 687

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F+    V +E+ A G+KP++I+YN ++    R  R      I+  M   GL P+  TY +
Sbjct: 688 FERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNT 747

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
            + +Y      ED + V R M + G + +   YN+++
Sbjct: 748 FVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYNSIV 784



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 62/126 (49%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
           F N+   S  +  YN  M +  +  + +++E +  ++L +G+KPD ++++T+I     N 
Sbjct: 662 FMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNG 721

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
               A   F  M ++G  PD +TY++ + +Y      E A G+         + + N ++
Sbjct: 722 RMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYN 781

Query: 275 TLIKLY 280
           +++  Y
Sbjct: 782 SIVDGY 787


>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
 gi|224029903|gb|ACN34027.1| unknown [Zea mays]
 gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
          Length = 819

 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 177/354 (50%), Gaps = 8/354 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y   M  +  C   +  + +FD M+  GV+P+ V+++ L+     + +  +A+E F
Sbjct: 329 DVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETF 388

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + +   G  PD ++Y+S+++AYGR+   E A  +++  R    + +  +++ LI  YG+A
Sbjct: 389 KLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSA 448

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     +++  EM+  G++P++I+ + LL   GR K+  ++  I       G+  N   Y
Sbjct: 449 GMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAY 508

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S + +Y      +  L +Y  M+   ++     YN L++    +G   E+ + FEDM  
Sbjct: 509 NSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVESLKFFEDMLD 568

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQ 460
             N       +SS+I     +GK++EA + FN M E G  P++   T+LI+ Y   G  +
Sbjct: 569 L-NIHLTKEVYSSVICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWR 627

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 513
           R  D+ +    +   G  PD   C  L+  + +  + E + +L+E +++   +L
Sbjct: 628 RAWDLFK---EMENNGTQPDAIVCSSLMEALNKGGQPERVLQLIEFMKQKKIQL 678



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 143/314 (45%), Gaps = 12/314 (3%)

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEE 295
           Y  MI  + R   V+ A GL+     ++WR  PN   +++LI  +  AG +   +N+ ++
Sbjct: 156 YGMMIRLHARHNKVDQARGLFFEM--QEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDD 213

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M+   + P+  TYNN+++  G A    +   + K+MT+NG+ P+  T+  +L A+     
Sbjct: 214 MQRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQ 273

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTF 414
               ++ +  MK   +       N ++     +G   EA E+F  M+     C PD  T+
Sbjct: 274 YSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTY 333

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +S++   S  G+    +A+F+ M+  G  PN+    +L+  Y       + +     L +
Sbjct: 334 TSIMYSYSVCGQAENCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQ 393

Query: 475 LGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS----KLGYVVKLLLEEQDIEGDF 530
            G+ PD      LLN   ++ + E  + V    + N+    K+ Y    L++     G  
Sbjct: 394 NGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSY--NALIDAYGSAGML 451

Query: 531 KKEATELFNSISKD 544
            KEA  L + + +D
Sbjct: 452 -KEAISLLHEMEQD 464



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 111/493 (22%), Positives = 208/493 (42%), Gaps = 34/493 (6%)

Query: 114 ATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYF---TNKLKASKEVILYNV 170
           A  D V +VL C    F  ++  +++  +    +   A+  F    N+        +Y +
Sbjct: 99  ADADAVDAVLNCWAGRFARRNFPLLIREIAISGSLKHAVHVFRWMKNQENYCARNDIYGM 158

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
            +++  +   +D+A  LF +M +   KP+  T+++LI           A+   + M    
Sbjct: 159 MIRLHARHNKVDQARGLFFEMQEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAA 218

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
             P   TY+++I+A G AGN + A  L  +        D    + ++  +     +   +
Sbjct: 219 IPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAI 278

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS--PNWNTYASLLR 348
             +E MK+  V P+  T N ++  + +     +   ++  M +   +  P+  TY S++ 
Sbjct: 279 AYFEIMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMY 338

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           +Y      E+  +V+  M  +G++ ++  YN LL   A  G   EA E F+ +K +   +
Sbjct: 339 SYSVCGQAENCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQN-GLR 397

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD  +++S++       +  +A  +FNEM +   +PN     +LI  YG A    + +  
Sbjct: 398 PDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISL 457

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS----------NSKLGYVVK 518
           L+ + + GI PD      LL    +  +     ++    KS          NS +G  + 
Sbjct: 458 LHEMEQDGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLS 517

Query: 519 LLLEEQDIEGDFKKEATELFNSI-SKDVK--KAYCNCLIDLCVNLNLLENACKLLE---- 571
           L        GD+KK A  L+ S+ + +VK      N LI     L     + K  E    
Sbjct: 518 L--------GDYKK-ALVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVESLKFFEDMLD 568

Query: 572 --LGLTLEVYTDI 582
             + LT EVY+ +
Sbjct: 569 LNIHLTKEVYSSV 581



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 111/256 (43%), Gaps = 3/256 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + YN+ +    K     ++ + F+DMLD  +      +S++I          +A   F
Sbjct: 539 DAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAASTF 598

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   GC PD LTY+++I AY   G+   A+ L+    N   + D    S+L++     
Sbjct: 599 NSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEALNKG 658

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP-NWNT 342
           G  +  L + E MK   ++ N   Y  ++ +     R W+  +   E  D+ LS  ++ T
Sbjct: 659 GQPERVLQLIEFMKQKKIQLNQKAYFEIISSCTML-RDWKTASQIIEHLDSSLSSISFGT 717

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
              +L   G+    E  + ++ +M      + ++ Y  LL     VG   +  E+ + M+
Sbjct: 718 LNHILNFLGKCGRTESMMKLFYKMVTSCSTVGLSTYTILLRNLLIVGKWRKYVEVLQWME 777

Query: 403 SSENCQPDSWTFSSMI 418
            +  C P  + + S++
Sbjct: 778 DAGVC-PTLYMYQSVL 792


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 151/325 (46%), Gaps = 3/325 (0%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           ++ ++       LA+ +    +K   E   +LYNV +    K   +D+A +LF  M   G
Sbjct: 55  VIQSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMG 114

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
              D+ T++ LI          +A   F+ M   GC P A  Y+++ID Y +AG +E A 
Sbjct: 115 CPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAM 174

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            +  +  ++    D    ++LI      G  +    ++E MK  GV  N +++N +LD  
Sbjct: 175 VVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCC 234

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           G+A +         EM   G+ PN  T+ +L+   GRA+Y  +   V +EM+  G+   V
Sbjct: 235 GKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDV 294

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y  ++   A  G   +AFE+F DM+ +  C  +  T++ +I      G+  +A  ++ 
Sbjct: 295 FTYTCMIEAFAKAGNMGKAFEMFGDMEKA-GCSANVVTYNLLIDALVKAGRYQDARDIYF 353

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQ 460
           +M + G  P+    T L Q  GK +
Sbjct: 354 DMKKKGILPDAITATVLQQLAGKCK 378



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 156/330 (47%), Gaps = 6/330 (1%)

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           +K ++ F+ +   G  P+A TY  +I +  +AGNV +A    D+        D   ++ +
Sbjct: 31  HKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVV 90

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           +   G A   D    ++  MK++G   +  TY  L+ ++GR KR  +   ++ EM + G 
Sbjct: 91  LDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGC 150

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
           +P+   Y +++  Y +A   E  + V ++M +K +       N+L+   +  G T+ A E
Sbjct: 151 TPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACE 210

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           IFE MK S     ++ +F++M+  C   GKV  A    +EM   G +PN     +LI C 
Sbjct: 211 IFERMKKS-GVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCL 269

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC---VEKSNSKL 513
           G+A+   +  + L  +   G+TPD     C++    +     +GK  E    +EK+    
Sbjct: 270 GRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAG--NMGKAFEMFGDMEKAGCSA 327

Query: 514 GYVVKLLLEEQDIEGDFKKEATELFNSISK 543
             V   LL +  ++    ++A +++  + K
Sbjct: 328 NVVTYNLLIDALVKAGRYQDARDIYFDMKK 357



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 147/313 (46%), Gaps = 1/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   ++   K  ++  A    D M+  G++PD + ++ ++      N+ ++A + F  M 
Sbjct: 52  YKCVIQSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMK 111

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S GC  D  TY+ +I + GR    E A  L+D            A++ +I +Y  AG  +
Sbjct: 112 SMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIE 171

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + V ++M    + P+  T N+L+  + R  R      I++ M  +G++ N  ++ ++L
Sbjct: 172 SAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAML 231

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
              G+A           EM+ +G++ +   +NTL+       Y  EA+++ ++M+S+   
Sbjct: 232 DCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSA-GL 290

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD +T++ MI   +  G + +A  MF +M +AG   N+     LI    KA R  D   
Sbjct: 291 TPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARD 350

Query: 468 ALNRLPELGITPD 480
               + + GI PD
Sbjct: 351 IYFDMKKKGILPD 363


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 169/336 (50%), Gaps = 1/336 (0%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A   ++    +  A   ++ +N  +    K   ++ A ++FD+M+  G+ PD V+++T
Sbjct: 204 DGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNT 263

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           L+S        ++++  F  M   G  PD +T++S+I A  +AGN+E A  L  + R   
Sbjct: 264 LLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERG 323

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
            R++   F+ LI  +   G  D  L   EEM+  G++P+++ YN L++   +  R    +
Sbjct: 324 LRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLAR 383

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM    + P+  TY++++  Y +    +    + ++M +KG+      Y++L+   
Sbjct: 384 ELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL 443

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            +    ++A E+FE+M      QPD +T++++I      G V +A ++ +EM+  G  P+
Sbjct: 444 CEEKRLNDACELFENMLQL-GVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 502

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +   + LI    K+ RT +  R L +L      PD+
Sbjct: 503 VVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDN 538



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 160/340 (47%), Gaps = 43/340 (12%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           L  A R    ML  GV P+  T++ L+   CAR      +AV     M   GC P+A+TY
Sbjct: 133 LPSARRFLSSMLRHGVAPNVYTYNILVRALCAR--GRLEEAVGVVGDMRGAGCAPNAVTY 190

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEM 296
           ++++ A+ RAG ++ A  +    R E+    PN   F++++     AG  +G   V++EM
Sbjct: 191 NTLVAAFCRAGELDGAERVVSLMR-EEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEM 249

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
              G+ P++++YN LL    +     +   ++ EMT  GL P+  T+ SL+ A  +A   
Sbjct: 250 VREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNL 309

Query: 357 EDTLSVYREMKEKGMQL-----------------------------------SVTLYNTL 381
           E  +++  +M+E+G+++                                   SV  YN L
Sbjct: 310 EQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNAL 369

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           +     +G  D A E+  +M+ ++  +PD  T+S++I+     G +  A  +  +ML+ G
Sbjct: 370 INGYCKLGRMDLARELIREME-AKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 428

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
             P+    +SLI+   + +R +D       + +LG+ PD+
Sbjct: 429 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDE 468



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 152/332 (45%), Gaps = 16/332 (4%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   +    K  +L++A  L   M +RG++ + VTF+ LI         + A+   
Sbjct: 292 DVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAV 351

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  P  + Y+++I+ Y + G +++A  L      ++ + D   +ST+I  Y   
Sbjct: 352 EEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKV 411

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           GN D    + ++M   GV P+ ITY++L+  +   KR      +++ M   G+ P+  TY
Sbjct: 412 GNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTY 471

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+  + +    E  LS++ EM  KG+   V  Y+ L+   +    T EA  +   +  
Sbjct: 472 TTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL-Y 530

Query: 404 SENCQPDSWTFSSMITICS---------------CRGKVSEAEAMFNEMLEAGFEPNLFV 448
            E+  PD+  + +++  CS                +G + EA+ ++  ML+  ++ +  V
Sbjct: 531 HEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSV 590

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            + LI  + +       +    ++   G +P+
Sbjct: 591 YSILIHGHCRGGNVRKALSFHKQMLRSGFSPN 622



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 3/182 (1%)

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGED 358
           G  P++  YN +L  +  A  P   +     M  +G++PN  TY  L+RA   R R  E+
Sbjct: 113 GYAPSVPAYNAVLLALSDASLP-SARRFLSSMLRHGVAPNVYTYNILVRALCARGRL-EE 170

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            + V  +M+  G   +   YNTL+A     G  D A  +   M+   N +P+  TF+SM+
Sbjct: 171 AVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMV 230

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 G++  A  +F+EM+  G  P++    +L+  Y K     + +   + + + G+ 
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLV 290

Query: 479 PD 480
           PD
Sbjct: 291 PD 292


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 154/321 (47%), Gaps = 1/321 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +  + +  D   A  +F+DM + G+KPD +T++ L++    N   N+A+E   RM 
Sbjct: 408 YSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARME 467

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S  C P   TY+ +ID + + G++ MAF      +   +R     ++ ++     AG  D
Sbjct: 468 SGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMD 527

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              ++ +EM   GV PN  +Y  L++              +  + + GL P+   YASLL
Sbjct: 528 RAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLL 587

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           +A  +A   + TL++  EM   G+ ++  +YN LL   A  G   EA +I + M+  E  
Sbjct: 588 KACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRH-EGL 646

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD  +++S I  C   G + +A     +M + G +PNL   T+LI  +  A   +  + 
Sbjct: 647 TPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKALI 706

Query: 468 ALNRLPELGITPDDRFCGCLL 488
             + +   G+ PD     C++
Sbjct: 707 CYDEMKSAGMIPDKPLYHCIM 727



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 159/389 (40%), Gaps = 80/389 (20%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           + + +  + K  D   A   F+ M   G++P+  +++ LI    +      A+   E M 
Sbjct: 195 HTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEME 254

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF- 286
           + G  P+A TYS +I  YGR G+VE A   + RA +E W  +   ++ +I  Y  AGN  
Sbjct: 255 AEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNME 314

Query: 287 ----------------------------------DGCLNVYEEMKA---IGVKPNMITYN 309
                                             D CLNV+  +KA    G+ P +++Y 
Sbjct: 315 RAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYG 374

Query: 310 ---NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
              NL   +G+  +  Q+     EM D G+  N  TY+ ++  Y +     +  SV+ +M
Sbjct: 375 CLINLYSKLGKMDKALQISN---EMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDM 431

Query: 367 KEKGMQLSVTLYNTLL-AMCAD----------------------------------VGYT 391
              G++     YN L+ A C +                                  +G  
Sbjct: 432 SNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDL 491

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
             AFE   DMK +   +P + T++ ++   +  G++  A ++ +EM+ AG  PN    T+
Sbjct: 492 RMAFETVRDMKMA-GFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTT 550

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPD 480
           LI+ Y          +  NR+ E+G+ PD
Sbjct: 551 LIEGYACIGDMGLAFKYFNRIKEVGLKPD 579



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 146/313 (46%), Gaps = 10/313 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +  F K  DL  A     DM   G +P   T++ ++         ++A    + M 
Sbjct: 478 YTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMV 537

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P+  +Y+++I+ Y   G++ +AF  ++R +    + D  A+++L+K    AG   
Sbjct: 538 VAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQ 597

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L +  EM A GV  N   YN LLD   +    W+   I ++M   GL+P+ ++Y S +
Sbjct: 598 STLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLTPDIHSYTSFI 657

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A  +A           +MK++G+Q ++  Y TL+   A   Y ++A   +++MKS+   
Sbjct: 658 NACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKALICYDEMKSA-GM 716

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFN-------EMLEAGFEPNLFVLTSLIQCYGKAQ 460
            PD   +  ++T    R  V+  E +F+       EM++ G   +        +   KA+
Sbjct: 717 IPDKPLYHCIMTSLLSRAAVAR-ETVFDGVLRVTSEMVDQGICVDFATAKHWQRFLIKAE 775

Query: 461 R-TDDVVRALNRL 472
           R + D+ RA+ R+
Sbjct: 776 RQSGDLTRAVERI 788



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 147/331 (44%), Gaps = 4/331 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++YN  +  + K  ++++AE +   M ++G++     ++ L+         +K +  F R
Sbjct: 298 VIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRR 357

Query: 226 MPS---FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           + +    G  P  ++Y  +I+ Y + G ++ A  + +   ++  + +   +S +I  Y  
Sbjct: 358 LKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQ 417

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G+     +V+E+M   G+KP+ ITYN L++   +  +  +   +   M      P   T
Sbjct: 418 LGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRT 477

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y  ++  + +           R+MK  G + S   YN ++   A  G  D A  I ++M 
Sbjct: 478 YTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMV 537

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            +    P+  +++++I   +C G +  A   FN + E G +P++    SL++   KA R 
Sbjct: 538 VA-GVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRM 596

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
              +     +   G+  ++     LL+   Q
Sbjct: 597 QSTLAITAEMAAAGVPMNNYIYNILLDGWAQ 627



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 134/306 (43%), Gaps = 9/306 (2%)

Query: 173 KVFRK-CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
           K FR    D  K  R   D   R  KP     + L++        + A   FE M + G 
Sbjct: 164 KGFRNLVEDHPKDARKVVDAFKRIKKPKQRDHTLLVNYYGKRGDKHSARAAFESMRAAGI 223

Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGC 289
           +P+  +Y+++I AY  A ++  A    +    E   + PNA  +S +I  YG  G+ +  
Sbjct: 224 EPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEG--VSPNAATYSVIISGYGRLGDVEAA 281

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
              ++   +     N + YNN++    +A    + + I   M + GL      Y  L+  
Sbjct: 282 ERWFQRALSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDG 341

Query: 350 YGRARYGEDTLSVYREMK---EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           Y   R  +  L+V+R +K   E G+  +V  Y  L+ + + +G  D+A +I  +M+  + 
Sbjct: 342 YVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEME-DQG 400

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            + +  T+S +I      G  + A ++F +M  AG +P+      L+  + K  + +  +
Sbjct: 401 IKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRAL 460

Query: 467 RALNRL 472
             L R+
Sbjct: 461 ELLARM 466



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 98/238 (41%), Gaps = 44/238 (18%)

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           L+  YG  G+       +E M+A G++PN+ +Y NL+     A+         +EM   G
Sbjct: 198 LVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEG 257

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           +SPN  TY+ ++  YGR                                  DV    EA 
Sbjct: 258 VSPNAATYSVIISGYGR--------------------------------LGDV----EAA 281

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           E +     SEN   +   ++++I      G +  AEA+   M E G E  L +   L+  
Sbjct: 282 ERWFQRALSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDG 341

Query: 456 YGKAQRTD---DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 510
           Y   +  D   +V R L    E G++P     GCL+N+ ++     LGK+ + ++ SN
Sbjct: 342 YVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSK-----LGKMDKALQISN 394


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 173/369 (46%), Gaps = 12/369 (3%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++YNV +    K  DL +  +L D+M  +G  P+ VT++TLI    +    +KAV   ER
Sbjct: 258 VIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLER 317

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S  C P+ +TY ++I+   +         L        +R++ + +S LI      G 
Sbjct: 318 MVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGK 377

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  + ++++M   G +PN++ Y+ ++D + R  +P + K I   M  +G  PN  TY+S
Sbjct: 378 AEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSS 437

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L++ + +    E+ + V+REM E G   +   Y+ L+     VG   EA  ++  M +  
Sbjct: 438 LMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTI- 496

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEML---EAGFEPNLFVLTSLIQCYGKAQRT 462
             +PD+  +SSMI      G +  A  +++EML   E   +P++     L+      +  
Sbjct: 497 GIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDV 556

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLE 522
              V  LN + + G  PD   C   LN +++          +  E+  S L  +V  LL+
Sbjct: 557 SRAVDLLNCMLDRGCDPDVITCNTFLNTLSEKS--------DSCEEGRSFLEELVARLLK 608

Query: 523 EQDIEGDFK 531
            Q + G  K
Sbjct: 609 RQRVSGACK 617



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/451 (20%), Positives = 206/451 (45%), Gaps = 24/451 (5%)

Query: 53  SSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSY------------DTRYN 100
           SSNP K S + ++       SP   + V  ++P  + + E+ +            D+  +
Sbjct: 24  SSNPVKFSIHLRFSASSVSVSPNPSMEV--ETPLEAPISEQMFKSAPKMGSFKLGDSTLS 81

Query: 101 SLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTN---PDTAALALTYFTN 157
           S+++  A+L   ++ E  + S +R      +E+  +++         P+ A        +
Sbjct: 82  SMIENYANLGDFASVEK-LLSRIRLENRVIIERSFIVVFRAYGKAHLPEKAVDLFHRMVD 140

Query: 158 KLKASKEVILYNVTMKVFRK----CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
           + +  + V  +N  + V        R L+  + + +  ++  + P+ ++F+ +I      
Sbjct: 141 EFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKL 200

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
              ++A+E F  MP   C PD  TY +++D   +   ++ A  L D  ++E     P  +
Sbjct: 201 GFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIY 260

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           + LI      G+      + + M   G  PN +TYN L+  +    +  +  ++ + M  
Sbjct: 261 NVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVS 320

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
           +   PN  TY +L+    + R   D   +   M+E+G +L+  +Y+ L++     G  +E
Sbjct: 321 SKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEE 380

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A  +++ M + + C+P+   +S++I      GK +EA+ + N M+ +G  PN++  +SL+
Sbjct: 381 AMTLWKKM-AEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLM 439

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
           + + K   +++ ++    + E G + ++ FC
Sbjct: 440 KGFFKTGLSEEAIQVWREMDETGCSRNE-FC 469


>gi|125560423|gb|EAZ05871.1| hypothetical protein OsI_28108 [Oryza sativa Indica Group]
          Length = 608

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 159/320 (49%), Gaps = 7/320 (2%)

Query: 174 VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDP 233
            + K  D  +AER+   M  +G KP  ++ + L+          KA   F RM + G +P
Sbjct: 151 AYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQTSGPEP 210

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEK---WRIDPNAFSTLIKLYGTAGNFDGCL 290
            A+TY  ++ ++      + A  +++   NEK   ++ D   F  +I +Y  AG++    
Sbjct: 211 SAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYAQAR 270

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            ++ +M   G+  + +T+N+L+      K   +V  IY +M    L P+  +Y+ L++AY
Sbjct: 271 KLFAQMSERGIPLSTVTFNSLMSFETDYK---EVSNIYDQMQRTALKPDVVSYSLLIKAY 327

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
           G+AR  E+ L+V+ EM + G++ +   YN L+   A  G  +EA  +F+ M+     +PD
Sbjct: 328 GKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMR-RHRVEPD 386

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
             ++++M+        +  AE  F  + E G +PN+ V  +L++ Y K    + V+R   
Sbjct: 387 LCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYE 446

Query: 471 RLPELGITPDDRFCGCLLNV 490
           R+   G+ P+      +++V
Sbjct: 447 RMRMQGVEPNQTIYTTIMDV 466



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 157/349 (44%), Gaps = 12/349 (3%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
           + NK      VI     M+ + + +   KAE +F  M   G +P  VT+  ++      +
Sbjct: 167 YMNKKGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQTSGPEPSAVTYQIILKSFVEGD 226

Query: 215 LPNKAVEWF-----ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
              +A   F     E+  SF   PD   +  MI  Y +AG+   A  L+ +       + 
Sbjct: 227 KYKEAEAIFEDLLNEKRASF--KPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLS 284

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
              F++L+       ++    N+Y++M+   +KP++++Y+ L+   G+A+R  +   +++
Sbjct: 285 TVTFNSLMSF---ETDYKEVSNIYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFE 341

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           EM D G+ P   +Y  L+ A+  +   E+  +V++ M+   ++  +  Y T++    +  
Sbjct: 342 EMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNAS 401

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
             D A + F  +K  +  +P+   + +++   S    V     ++  M   G EPN  + 
Sbjct: 402 DMDGAEKFFRRIK-EDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIY 460

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
           T+++  +G+     + V     +   G   D +    LL+ + +TP+E+
Sbjct: 461 TTIMDVHGRNSDFGNAVIWFKEMEARGYPADKKAKNILLS-LAKTPEEQ 508



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 118/262 (45%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D  +   ++D M    +KPD V++S LI          +A+  FE M   G  P   +Y+
Sbjct: 297 DYKEVSNIYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYN 356

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +IDA+  +G VE A  ++   R  +   D  +++T++  Y  A + DG    +  +K  
Sbjct: 357 ILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKED 416

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G+KPN++ Y  L+    +     +V  +Y+ M   G+ PN   Y +++  +GR     + 
Sbjct: 417 GLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDVHGRNSDFGNA 476

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           +  ++EM+ +G        N LL++       +EA E+  +       +PD  T+   I 
Sbjct: 477 VIWFKEMEARGYPADKKAKNILLSLAKTPEEQEEANELTGNCAIQLEAKPDGTTYGLEIN 536

Query: 420 ICSCRGKVSEAEAMFNEMLEAG 441
                 K  + +A  + +L+  
Sbjct: 537 GTGNEYKHGQNDAGHDSLLDGA 558



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           W      F  L+  YG  G+F     V + M   G KP++I+   L++  GRAK+  + +
Sbjct: 138 WNFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAE 197

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM---KEKGMQLSVTLYNTLL 382
            +++ M  +G  P+  TY  +L+++      ++  +++ ++   K    +    +++ ++
Sbjct: 198 AVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMI 257

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
            M    G   +A ++F  M  SE   P  + TF+S+++  +   +VS    ++++M    
Sbjct: 258 YMYKKAGDYAQARKLFAQM--SERGIPLSTVTFNSLMSFETDYKEVSN---IYDQMQRTA 312

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
            +P++   + LI+ YGKA+R ++ +     + + G+ P  +    L++ 
Sbjct: 313 LKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDA 361


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 170/349 (48%), Gaps = 3/349 (0%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDML 192
           C I+LN +      A A   F   +        ++YN  +  + + RDL  A  +F+ M 
Sbjct: 337 CSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMK 396

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
            R ++PD++T++ LI+      +  KA +    M   G DP   T++++IDAYG AG +E
Sbjct: 397 SRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLE 456

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
             F +    + +  + D  +F +++K +   G     + + ++M    V PN   YN+++
Sbjct: 457 KCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSII 516

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           D    +    Q   + ++M ++G+S +  TY  LL+   R+   ++   +   ++ +G++
Sbjct: 517 DAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLR 576

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
             V  YNT+++ C + G TD+A E+ ++M +    +P   T  ++++  +  G+V + E 
Sbjct: 577 PDVVSYNTIISACCNKGDTDKALELLQEM-NKYGIRPTLRTCHTLVSALASAGRVHDMEC 635

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           ++ +ML    EP+  +   ++  Y + +    V      + E GI  DD
Sbjct: 636 LYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFDD 684



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 169/357 (47%), Gaps = 7/357 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD--LDKAERLFDDMLDR 194
           I+ + +T    +   L+ F   LK    +  Y  ++ +   C+D  + KA+++F+ ++  
Sbjct: 304 ILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHT 363

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G+ P  V ++TLI+          A   FE+M S    PD +TY+++I+   +   V  A
Sbjct: 364 GLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKA 423

Query: 255 FGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
             L      EK  +DP+   F+TLI  YGTAG  + C  V  +M+  G+K ++I++ +++
Sbjct: 424 EDLV--MEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVV 481

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
               +  +  +   I  +M    ++PN   Y S++ AY  +   E  L +  +MK  G+ 
Sbjct: 482 KAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVS 541

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            S+  YN LL         DEA E+   +++ +  +PD  +++++I+ C  +G   +A  
Sbjct: 542 ASIVTYNLLLKGLCRSSQIDEAEELIYTLRN-QGLRPDVVSYNTIISACCNKGDTDKALE 600

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           +  EM + G  P L    +L+     A R  D+     ++    + P     G +++
Sbjct: 601 LLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVD 657



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 146/313 (46%), Gaps = 6/313 (1%)

Query: 173 KVFRKC---RDLDKAERLFDDM--LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           KV + C    DLD A  +   M   +    PD  +++ +I+    +   + A++ F+ M 
Sbjct: 162 KVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMV 221

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P+ +TY++MID + + G++E  F L D+  ++  + +   ++ L+      G  D
Sbjct: 222 DMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMD 281

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + +EM +  + P+  TY+ L D + R      + +++ E    G+     T + LL
Sbjct: 282 ETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILL 341

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +         V+  +   G+  +  +YNTL+     V     AF IFE MK S + 
Sbjct: 342 NGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMK-SRHI 400

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD  T++++I        V++AE +  EM ++G +P++    +LI  YG A + +    
Sbjct: 401 RPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFT 460

Query: 468 ALNRLPELGITPD 480
            L+ + + GI  D
Sbjct: 461 VLSDMQQKGIKSD 473


>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
          Length = 793

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 152/298 (51%), Gaps = 1/298 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   + +  + R      +L  +M+  G +P+ VT++ LI      N  N+AV  F+RM 
Sbjct: 391 YTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQ 450

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC PD +TY ++ID + +AG +++A  +Y + +      D   +S +I   G AG+  
Sbjct: 451 EAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLT 510

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++ EM   G  PN++TYN ++    +A+       +Y++M + G  P+  TY+ ++
Sbjct: 511 SAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVM 570

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
              G   + E+  +++ EMK K       +Y  L+ +   VG  ++++E ++ M ++  C
Sbjct: 571 EVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLC 630

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
            P+  T +S+++      ++S+A  +   ML  G +P+L   T L+ C  +A+ + D+
Sbjct: 631 -PNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTLLLSCCTEARSSFDM 687



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 177/390 (45%), Gaps = 19/390 (4%)

Query: 195 GVKPDNVTFSTLISC---ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
           G K D  T++T++     AR     NK       M   GC P+ +TY+ +I +YGRA  +
Sbjct: 383 GFKHDGHTYTTMVGILGRARQFGAINK---LLAEMVRDGCQPNVVTYNRLIHSYGRANYL 439

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
             A  ++DR +    + D   + TLI ++  AG  D  L++Y++M+   + P+  TY+ +
Sbjct: 440 NEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVI 499

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           ++ +G+A        ++ EM D G  PN  TY  ++    +AR     L +YR+M+  G 
Sbjct: 500 INCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGF 559

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
           Q     Y+ ++ +    G+ +EA  IF +MK  +N  PD   +  ++ +    G V ++ 
Sbjct: 560 QPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKR-KNWVPDEPVYGLLVDLWGKVGNVEKSW 618

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
             +  ML AG  PN+    SL+  + +  R  D    L  +  LG+ P  +    LL+  
Sbjct: 619 EWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTLLLSCC 678

Query: 492 TQTPKE-ELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-------DFKKEATELFNSISK 543
           T+     ++G   E +  +    G+   + L      G       D   +  +L +S  +
Sbjct: 679 TEARSSFDMGFCGELMAVT----GHPAHMFLLSMPAAGPDGQNVRDHVSKFLDLMHSEDR 734

Query: 544 DVKKAYCNCLIDLCVNLNLLENACKLLELG 573
           + K+   + ++D      L E A  + E+ 
Sbjct: 735 ESKRGLVDAVVDFLHKSGLKEEAGSVWEVA 764



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 136/294 (46%), Gaps = 9/294 (3%)

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           +  G K +  TY  ++  +GRA++   +  +  EM  +G  PN  TY  L+ +YGRA Y 
Sbjct: 380 RQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYL 439

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            + +SV+  M+E G Q     Y TL+ + A  G+ D A  +++ M+ + +  PD++T+S 
Sbjct: 440 NEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEA-HLSPDTFTYSV 498

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I      G ++ A  +F EM++ G  PNL     +I    KA+     +     +   G
Sbjct: 499 IINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAG 558

Query: 477 ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN-----SKLGYVVKLLLEEQDIEGDF 530
             PD      ++ V+      EE   +   +++ N        G +V L  +  ++E  +
Sbjct: 559 FQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSW 618

Query: 531 KKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQS 584
           +     L   +  +V    CN L+   + ++ L +A  LL+  L L +   +Q+
Sbjct: 619 EWYQAMLNAGLCPNVPT--CNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQT 670



 Score = 47.8 bits (112), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A   F  +K     + D  T+++M+ I     +      +  EM+  G +PN+     LI
Sbjct: 371 ALGFFYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLI 430

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
             YG+A   ++ V   +R+ E G  P DR   C L
Sbjct: 431 HSYGRANYLNEAVSVFDRMQEAGCQP-DRVTYCTL 464


>gi|410110069|gb|AFV61114.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           lycioides]
          Length = 429

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 166/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 80  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVF 139

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 140 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 197

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   +  N++TYN+++   G+     +   + +EM + G+ PN  
Sbjct: 198 DAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSI 257

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   LY T++      G    A  +  ++
Sbjct: 258 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHEL 317

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           KS +N   D     + I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++
Sbjct: 318 KSPDNIPRD-----TAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKK 372

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 373 YANVVEVFDKMRGLGYFPDSNVIALVLN 400



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 148/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 14  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 73

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 74  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFL 133

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 134 EALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 193

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K +  +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 194 RVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 252

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R
Sbjct: 253 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKR 312

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 313 LLHELKSPDNIPRD 326



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 205 AIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 264

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + Y +MI AY RAG V  A     R  +E    
Sbjct: 265 IWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHA----KRLLHELKSP 320

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 321 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKKYANVVEVF 380

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 381 DKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQEVG 422



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 79/164 (48%), Gaps = 1/164 (0%)

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           EM    LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   + 
Sbjct: 1   EMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 60

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
              +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    
Sbjct: 61  DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 119

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           ++L+  Y + ++  + +   + + E+    D   C  +++V  Q
Sbjct: 120 STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 163



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 94/222 (42%), Gaps = 36/222 (16%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 10  DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 69

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G                  
Sbjct: 70  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAG------------------ 111

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
                               P++ ++S+++T+     K  EA ++F+EM E     +L  
Sbjct: 112 ------------------VMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTT 153

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
              +I  YG+     +  +    + ++GI P+      LL V
Sbjct: 154 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRV 195



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           EM+++ +      Y+TL+      G  D A    + M+  +    D   +S++I +    
Sbjct: 1   EMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ-DRVPGDLVLYSNLIELSRKL 59

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
              S+A ++F+ +  +GF P+L    ++I  +GKA+   +    ++ +   G+ P+    
Sbjct: 60  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 119

Query: 485 GCLLNVMTQTPK 496
             LL +  +  K
Sbjct: 120 STLLTMYVENKK 131


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 181/398 (45%), Gaps = 63/398 (15%)

Query: 122 VLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKA-------------------- 161
           V+R LG +        +L+ M  P  + L +  +T  L A                    
Sbjct: 143 VVRALGREGQHDAVCALLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERAVELFAELRRQ 202

Query: 162 --SKEVILYNVTMKVF-RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
             +  ++ YNV + V+ R  R   +   L D+M   GV+PD+ T ST+I+    + L ++
Sbjct: 203 GVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDGLVDE 262

Query: 219 AVEWFE-----------------------------------RMPSFGCDPDALTYSSMID 243
           AV +FE                                    M   GC PDA+TY+ +  
Sbjct: 263 AVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAG 322

Query: 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGV 301
            Y RAG  E A    D   ++   + PNAF+  T++  YG  G  D  L ++++MK  G 
Sbjct: 323 TYARAGFYEEAAKCLDTMTSKG--LLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGC 380

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            PN+ TYN +L  +G+  R   +  +  EM+ +G +PN  T+ ++L   G+    +    
Sbjct: 381 VPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTR 440

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           V   MK  G++LS   YNTL+A     G    AF+++ +M +S    P   T+++++ + 
Sbjct: 441 VLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEM-TSAGFAPCLTTYNALLNVL 499

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           S +G  S A+++ ++M   GF+PN    + L+QCY K 
Sbjct: 500 SRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKG 537



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 153/329 (46%), Gaps = 4/329 (1%)

Query: 155 FTNKLKASKE---VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
           F   LKA      V+ YN  ++VF K  +  +A R+  +M   G +PD VT++ L     
Sbjct: 266 FFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYA 325

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
                 +A +  + M S G  P+A TY++++ AYG  G V+ A  L+D+ +      + N
Sbjct: 326 RAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVN 385

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
            ++ ++ + G    F   L +  EM   G  PN +T+N +L   G+      V  + + M
Sbjct: 386 TYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGM 445

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G+  + +TY +L+ AYGR     +   +Y EM   G    +T YN LL + +  G  
Sbjct: 446 KSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDW 505

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
             A  I   M+ ++  +P+  ++S ++   +  G ++  +A+  E+      P+  +L +
Sbjct: 506 STAQSIVSKMR-TKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRT 564

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPD 480
           L+    K +R   + +A   +   G  PD
Sbjct: 565 LVIANFKCRRLGGIEKAFQEVKARGYNPD 593



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 145/316 (45%), Gaps = 7/316 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  M  +     +D+A  LFD M   G  P+  T++ ++      +     +E    M 
Sbjct: 352 YNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMS 411

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P+ +T+++M+   G+ G  +    + +  ++    +  + ++TLI  YG  G+  
Sbjct: 412 RSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRT 471

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +Y EM + G  P + TYN LL+ + R       ++I  +M   G  PN  +Y+ LL
Sbjct: 472 NAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLL 531

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM---CADVGYTDEAFEIFEDMKSS 404
           + Y +        ++ +E+    +  S  +  TL+     C  +G  ++AF+  +    +
Sbjct: 532 QCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVK----A 587

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               PD   F+SM+++ +  G  S+   +F+ + ++G  P+L    SL+  Y K   + +
Sbjct: 588 RGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWE 647

Query: 465 VVRALNRLPELGITPD 480
             + LN+L    + PD
Sbjct: 648 AEKILNQLKSSQVKPD 663



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 151/331 (45%), Gaps = 1/331 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALAL     K      V  YN  + +  K         +  +M   G  P+ VT++T+++
Sbjct: 368 ALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLA 427

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 + +      E M S G +    TY+++I AYGR G+   AF +Y+   +  +  
Sbjct: 428 VCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAP 487

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
               ++ L+ +    G++    ++  +M+  G KPN  +Y+ LL    +      +  I 
Sbjct: 488 CLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIE 547

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           KE+    + P+W    +L+ A  + R        ++E+K +G    + ++N++L+M A  
Sbjct: 548 KEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKN 607

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G   +  EIF+ +K S    PD  T++S++ + +   +  EAE + N++  +  +P++  
Sbjct: 608 GMYSKVTEIFDSIKQS-GLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVS 666

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             ++I  + K     +  R L+ +   G+ P
Sbjct: 667 YNTVINGFCKQGLIKEAQRILSEMIADGMAP 697



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 145/314 (46%), Gaps = 1/314 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +N  + V  K    D   R+ + M   GV+    T++TLI+          A + +  
Sbjct: 420 VTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNE 479

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S G  P   TY+++++   R G+   A  +  + R + ++ +  ++S L++ Y   GN
Sbjct: 480 MTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGN 539

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
             G   + +E+    V P+ +    L+    + +R   ++  ++E+   G +P+   + S
Sbjct: 540 IAGIDAIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNS 599

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +L  Y +         ++  +K+ G+   +  YN+L+ M A    + EA +I   +KSS+
Sbjct: 600 MLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQ 659

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +PD  +++++I     +G + EA+ + +EM+  G  P +    +L+  Y   +   + 
Sbjct: 660 -VKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEA 718

Query: 466 VRALNRLPELGITP 479
              +N + +  + P
Sbjct: 719 REVINYMIQHNLKP 732



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 108/226 (47%), Gaps = 1/226 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VIL  + +  F KCR L   E+ F ++  RG  PD V F++++S    N + +K  E F+
Sbjct: 560 VILRTLVIANF-KCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFD 618

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G  PD +TY+S++D Y +      A  + ++ ++ + + D  +++T+I  +   G
Sbjct: 619 SIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQG 678

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  +  EM A G+ P ++TY+ L+      +   + + +   M  + L P   TY 
Sbjct: 679 LIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYMIQHNLKPMELTYR 738

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
            ++ +Y +A+  E+  S   E+ E        + +TL A   D  +
Sbjct: 739 RVVDSYCKAKRFEEARSFLSEVSETDPNFDKKVLHTLAAYIEDAQF 784



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 132/285 (46%), Gaps = 15/285 (5%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERM 226
           YN  + V  +  D   A+ +   M  +G KP++ ++S L+ C A+  N+    ++  E+ 
Sbjct: 492 YNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNI--AGIDAIEKE 549

Query: 227 PSFG-CDPDALTYSSMIDAY---GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
              G   P  +   +++ A     R G +E AF      +   +  D   F++++ +Y  
Sbjct: 550 VYGGTVFPSWVILRTLVIANFKCRRLGGIEKAF---QEVKARGYNPDLVIFNSMLSMYAK 606

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G +     +++ +K  G+ P++ITYN+L+D   +    W+ + I  ++  + + P+  +
Sbjct: 607 NGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVS 666

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +++  + +    ++   +  EM   GM   V  Y+TL+   A +    EA E+   M 
Sbjct: 667 YNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYM- 725

Query: 403 SSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNL 446
              N +P   T+  ++ + C  + +  EA +  +E+ E   +PN 
Sbjct: 726 IQHNLKPMELTYRRVVDSYCKAK-RFEEARSFLSEVSET--DPNF 767



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 37/180 (20%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S ++I YN  M ++ KC +  +AE++ + +    VKPD V+++T+I+      L  +A  
Sbjct: 626 SPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQR 685

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
               M + G  P  +TY +++  Y    ++EM                            
Sbjct: 686 ILSEMIADGMAPCVVTYHTLVGGY---ASLEM---------------------------- 714

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
               F     V   M    +KP  +TY  ++D+  +AKR  + ++   E+++    PN++
Sbjct: 715 ----FSEAREVINYMIQHNLKPMELTYRRVVDSYCKAKRFEEARSFLSEVSET--DPNFD 768



 Score = 46.6 bits (109), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)

Query: 157 NKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
           N+LK+S+   +V+ YN  +  F K   + +A+R+  +M+  G+ P  VT+ TL+      
Sbjct: 653 NQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASL 712

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
            + ++A E    M      P  LTY  ++D+Y +A   E A        +E    DPN
Sbjct: 713 EMFSEAREVINYMIQHNLKPMELTYRRVVDSYCKAKRFEEARSFL----SEVSETDPN 766


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 172/341 (50%), Gaps = 5/341 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ + +      +++A R+ D+M    + P+ +T + ++          +A + FE   
Sbjct: 391 YNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESAS 450

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC+PD +TY S+ID  G+ G V+ A+ L+++  +     +P  +++LI+ +   G  +
Sbjct: 451 QRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKE 510

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +++E+   G KP++   N  +D + +A    + + I++++   G  P+  +Y+ L+
Sbjct: 511 DGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILI 570

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +A    +T +++  MK++G  L    YN ++      G   +A+EI E+MK  E C
Sbjct: 571 HGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK--EKC 628

Query: 408 -QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            QP   T+ +++   +   ++ EA  +F E    G E N+ + +SLI  +GK  R D+  
Sbjct: 629 VQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAY 688

Query: 467 RALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
             L  + + G+TP+      LL+ + +   EE+ + + C +
Sbjct: 689 LILEEMMKKGLTPNVYTWNSLLDALVKA--EEINEALVCFQ 727



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 176/390 (45%), Gaps = 22/390 (5%)

Query: 111 SCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTN------PDTAALALTYFTNKLKASKE 164
           S S T D V SVLR + +  L     ++ ++ +       P  A  A+  F +   A+ E
Sbjct: 70  SASPTADVVISVLRSIRNPSLAAPFFLLASSSSASAPHPLPADAYHAVLPFLHHDLAALE 129

Query: 165 VILYNVTMKVF----RKCRDLD----KAERLFDDMLDRGV------KPDNVTFSTLISCA 210
            +L  + +  +    + C  L     +A RL D +L   V      +P    ++ LI   
Sbjct: 130 KVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGAL 189

Query: 211 RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP 270
                P +A+E   +M   G +     +++++ A  R G V  A  L D  +      D 
Sbjct: 190 AEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDI 249

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
             ++  I  +G AGN D     + E+KA G+KP+ ++Y +++  + +A R  + + ++ +
Sbjct: 250 VLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQ 309

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           M      P    Y +++  YG A   ED   +   ++E+G   SV  +N++L        
Sbjct: 310 MEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRK 369

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
            DEA  +FE MK  ++ +P+S T++ +I +    G+V EA  + +EM  A   PNL  + 
Sbjct: 370 VDEALSLFEVMK--KDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVN 427

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            ++    KA++ ++  +      + G  PD
Sbjct: 428 IMVDRLCKARKLEEAYKIFESASQRGCNPD 457



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 140/300 (46%), Gaps = 3/300 (1%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           +   ++F +++ RG KPD    +T + C        K    FE + S+G  PD  +YS +
Sbjct: 510 EDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSIL 569

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I    +AG       ++   + + + +D  A++ ++  +  +G       + EEMK   V
Sbjct: 570 IHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCV 629

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           +P + TY  ++D + +  R  +   +++E    G+  N   Y+SL+  +G+    ++   
Sbjct: 630 QPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYL 689

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-I 420
           +  EM +KG+  +V  +N+LL         +EA   F+ MK  + C P+++T+S +I  +
Sbjct: 690 ILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMK-CPPNTYTYSILINGL 748

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           C  + K ++A   + +M + G  PN+   T++I    K     D      R    G  PD
Sbjct: 749 CRVQ-KYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPD 807



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 140/293 (47%), Gaps = 1/293 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +    K     +   +F  M  +G   D   ++ ++     +   +KA E  E M 
Sbjct: 566 YSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK 625

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                P   TY +++D   +   ++ A+ L++ A+++   ++   +S+LI  +G  G  D
Sbjct: 626 EKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRID 685

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + EEM   G+ PN+ T+N+LLD + +A+   +    ++ M +    PN  TY+ L+
Sbjct: 686 EAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILI 745

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               R +        +++M+++G+  +V  Y T+++  A VG   +A+ +FE  K++   
Sbjct: 746 NGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGI 805

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
            PD+ +F+++I   S   +  EA  +F E    G   N+    SL+    K++
Sbjct: 806 -PDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCISLLDALNKSE 857



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 95/204 (46%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+LY+  +  F K   +D+A  + ++M+ +G+ P+  T+++L+         N+A+  F+
Sbjct: 668 VVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQ 727

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M    C P+  TYS +I+   R      AF  +   + +    +   ++T+I      G
Sbjct: 728 SMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVG 787

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N     +++E  KA G  P+  ++N L++ M  A R  +   +++E    G   N  +  
Sbjct: 788 NITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCI 847

Query: 345 SLLRAYGRARYGEDTLSVYREMKE 368
           SLL A  ++   E    V   ++E
Sbjct: 848 SLLDALNKSECLEQAAIVGAVLRE 871


>gi|299116347|emb|CBN76149.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 169/359 (47%), Gaps = 26/359 (7%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVF-----------------RKCRDLDKAERLFDD 190
           +AL++    ++   + E + +N  +  F                 R+      A  L  D
Sbjct: 511 SALSVLREMDRAGVTPETVAFNTVLAAFEHRAHSGGSSSGGGAAKREAPRWPMALELLAD 570

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM----PSFGCDPDALTYSSMIDAYG 246
           M  RGV+PD VT+++LI+  R     ++A+E  + M     + G  PD +TY+S I A  
Sbjct: 571 MERRGVEPDVVTYNSLINVLRWGGQRDRALEILDGMNAKGGAGGVRPDVITYNSAIAACA 630

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
             G  + A  L    R +  + D  ++++ I     AGN +  L +   M+A  V P++I
Sbjct: 631 SGGESKKASQLIGEMRRKGLKPDRYSYTSAIHACSKAGNPEEALRLLRAMEASNVVPDVI 690

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
                +D +    +  +  TI  EM   G++PN  TY + ++A GR    +  L +   +
Sbjct: 691 AMTACMDALAAGGKWSEAITILDEMRSKGVTPNERTYKAAIQACGRGGQWQRALELLSRL 750

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE---NCQPDSWTFSSMITICSC 423
           + +    +V  YN  +  C   G +  A  + E MK+++   N  PD  T++S I  CS 
Sbjct: 751 ENRASGATVQEYNCAMMACVTGGESGRALALLEQMKANKGGVNAGPDMVTYTSAIMACSS 810

Query: 424 RGKVSEAEAMFNEMLEAG--FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            GK   A ++ +EM EAG   +PN+   T+ I   G+A++ ++ V   ++L E G++PD
Sbjct: 811 TGKWDRALSLLDEMREAGPRTQPNIRSYTAAIAACGRARKWEEAVALHSKLLEEGMSPD 869



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 158/391 (40%), Gaps = 76/391 (19%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC----ARMNNLPNKA 219
           ++ + +  M    K RD + A    D  +  G+KPD+  F   I       +     + A
Sbjct: 339 DIEMLSAAMDACSKARDTEGAVHFMDQAIRLGLKPDDTMFREAILAYSLAGKWVEARDLA 398

Query: 220 VEWFERMPSF------GCD---------------PDALTYSSMIDAYGRAGNVEMAFG-- 256
           ++W  + PS       G D               P  +  ++++ A G+AG V+ A    
Sbjct: 399 LQWRGQAPSPASSSTPGGDGGGAVSVGLGISRPPPPTVCNTAILKAMGKAGKVDEAIAWL 458

Query: 257 --LYDRA-------------RNEKWRI------DPNAFSTLIKLYGTAGNFDGCLNVYEE 295
              YD A              +E+  +      D ++F  ++     AG +   L+V  E
Sbjct: 459 GDTYDAATATATAASGAGTTEDEQGSVRGFVCLDHSSFMAVLSACSKAGRWGSALSVLRE 518

Query: 296 MKAIGVKPNMITYNNLLDTM-------------GRAKRP---WQVK-TIYKEMTDNGLSP 338
           M   GV P  + +N +L                G AKR    W +   +  +M   G+ P
Sbjct: 519 MDRAGVTPETVAFNTVLAAFEHRAHSGGSSSGGGAAKREAPRWPMALELLADMERRGVEP 578

Query: 339 NWNTYASLLRAYGRARYG---EDTLSVYREMKEKG----MQLSVTLYNTLLAMCADVGYT 391
           +  TY SL+      R+G   +  L +   M  KG    ++  V  YN+ +A CA  G +
Sbjct: 579 DVVTYNSLINVL---RWGGQRDRALEILDGMNAKGGAGGVRPDVITYNSAIAACASGGES 635

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
            +A ++  +M+  +  +PD ++++S I  CS  G   EA  +   M  +   P++  +T+
Sbjct: 636 KKASQLIGEMRR-KGLKPDRYSYTSAIHACSKAGNPEEALRLLRAMEASNVVPDVIAMTA 694

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
            +       +  + +  L+ +   G+TP++R
Sbjct: 695 CMDALAAGGKWSEAITILDEMRSKGVTPNER 725



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/312 (20%), Positives = 123/312 (39%), Gaps = 76/312 (24%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNN-------- 214
           +VI YN  +       +  KA +L  +M  +G+KPD  ++++ I +C++  N        
Sbjct: 618 DVITYNSAIAACASGGESKKASQLIGEMRRKGLKPDRYSYTSAIHACSKAGNPEEALRLL 677

Query: 215 --------LPN------------------KAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
                   +P+                  +A+   + M S G  P+  TY + I A GR 
Sbjct: 678 RAMEASNVVPDVIAMTACMDALAAGGKWSEAITILDEMRSKGVTPNERTYKAAIQACGRG 737

Query: 249 GNVEMAFGLYDRARN---------------------EKWRI------------------D 269
           G  + A  L  R  N                     E  R                   D
Sbjct: 738 GQWQRALELLSRLENRASGATVQEYNCAMMACVTGGESGRALALLEQMKANKGGVNAGPD 797

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG--VKPNMITYNNLLDTMGRAKRPWQVKTI 327
              +++ I    + G +D  L++ +EM+  G   +PN+ +Y   +   GRA++  +   +
Sbjct: 798 MVTYTSAIMACSSTGKWDRALSLLDEMREAGPRTQPNIRSYTAAIAACGRARKWEEAVAL 857

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           + ++ + G+SP+  ++ +++RA  R    + ++ +   M E G+         L++  +D
Sbjct: 858 HSKLLEEGMSPDPASFNAVIRAARRGGQHKLSMKLLASMVEAGLTPDGVTVGELISSLSD 917

Query: 388 VGYTDEAFEIFE 399
            G  D+A  + E
Sbjct: 918 RGRWDDAQRVVE 929


>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Brachypodium distachyon]
          Length = 904

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 166/359 (46%), Gaps = 36/359 (10%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           +I Y   + ++ K   + KA  +  +M   G+K +N T+S LIS    +++  N A   F
Sbjct: 444 IISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFAN-AFSIF 502

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  PD   Y+ +I+A+ + GN++ A  + ++ + E+ +    AF  +I+ +  A
Sbjct: 503 EEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVA 562

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+    LN+ + M+  G  P ++TYN L+  + +  +  +  ++  +M+  G++PN +TY
Sbjct: 563 GDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTY 622

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++R Y            + ++KE G++L V +Y TLL  C   G    A  +  +M +
Sbjct: 623 TIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMST 682

Query: 404 SE--------NCQPDSW--------------------------TFSSMITICSCRGKVSE 429
            +        N   D W                          T++S I  C   G +  
Sbjct: 683 QKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQR 742

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           A+ +  EM + G +PNL   T+LI+ + KA   D  +++   +   G+ PD+    CL+
Sbjct: 743 AQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLV 801



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 142/315 (45%), Gaps = 1/315 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           ++   +  +   RD+       ++M   G++   VT+S +I+     N    A   F+  
Sbjct: 306 VFTSLVHAYAVARDMRGVLSCVEEMKAEGIELTIVTYSIIIAGFAKINDAQSADNLFKEA 365

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            +   D + + YS++I A+ ++GN++ A  L      +      +A+ +++  Y    + 
Sbjct: 366 KAKLGDLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDE 425

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
             CL V+E +K     P++I+Y  L++   +  +  +   I KEM   G+  N  TY+ L
Sbjct: 426 KKCLIVFERLKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSML 485

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  +       +  S++ EM + G+Q    +YN L+     +G  D A  I E M+  E 
Sbjct: 486 ISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQ-KER 544

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            QP +  F  +I   +  G +  A  + + M  +G  P +    +LI    K  + +  V
Sbjct: 545 MQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAV 604

Query: 467 RALNRLPELGITPDD 481
             LN++   GITP++
Sbjct: 605 SVLNKMSIAGITPNE 619



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 131/300 (43%), Gaps = 8/300 (2%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D+ +A  + D M   G  P  +T++ LI      N   +AV    +M   G  P+  TY+
Sbjct: 564 DMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYT 623

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            ++  Y   G++  AF  + + +    ++D   + TL++    +G     L V  EM   
Sbjct: 624 IIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQ 683

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
            +  N   YN L+D   R    W+   + K+M ++G+ PN +TY S + A  +A   +  
Sbjct: 684 KIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRA 743

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
             V  EM + G++ ++  Y TL+   A     D A + FE+MK +   +PD   +  ++T
Sbjct: 744 QKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLA-GLKPDEAAYHCLVT 802

Query: 420 ICSCRGKVSEAE------AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV-RALNRL 472
               R  V E        ++  EM E     ++       +   K +RT   +  AL R+
Sbjct: 803 SLLSRATVMEGSTYTGILSICREMFENDLTVDMRTAVHWSRWLHKIERTGGALTEALQRI 862



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 134/291 (46%), Gaps = 1/291 (0%)

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
            +R  KP    F  +I         + A   FE M + G +P+A  ++S++ AY  A ++
Sbjct: 261 FERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDM 320

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
                  +  + E   +    +S +I  +    +     N+++E KA     N I Y+N+
Sbjct: 321 RGVLSCVEEMKAEGIELTIVTYSIIIAGFAKINDAQSADNLFKEAKAKLGDLNGIIYSNI 380

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +    ++    + + + +EM ++G+    + Y S++  Y   +  +  L V+  +KE   
Sbjct: 381 IHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCF 440

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
             S+  Y  L+ +   +G   +A  I ++M+S    + ++ T+S +I+        + A 
Sbjct: 441 TPSIISYGCLINLYIKIGKVTKAIAISKEMESY-GIKHNNKTYSMLISGFIHLHDFANAF 499

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           ++F EML++G +P+  +   LI+ + K    D  +R L ++ +  + P +R
Sbjct: 500 SIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNR 550


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 169/336 (50%), Gaps = 1/336 (0%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A   ++    +  A   ++ +N  +    K   ++ A ++FD+M+  G+ PD V+++T
Sbjct: 62  DGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNT 121

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           L+S        ++++  F  M   G  PD +T++S+I A  +AGN+E A  L  + R   
Sbjct: 122 LLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERG 181

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
            R++   F+ LI  +   G  D  L   EEM+  G++P+++ YN L++   +  R    +
Sbjct: 182 LRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLAR 241

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM    + P+  TY++++  Y +    +    + ++M +KG+      Y++L+   
Sbjct: 242 ELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL 301

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            +    ++A E+FE+M      QPD +T++++I      G V +A ++ +EM+  G  P+
Sbjct: 302 CEEKRLNDACELFENMLQL-GVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 360

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +   + LI    K+ RT +  R L +L      PD+
Sbjct: 361 VVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDN 396



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 160/323 (49%), Gaps = 12/323 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           V  YN+ ++       L++A  +  DM   G  P+ VT++TL++   R   L     +  
Sbjct: 10  VYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGEL-----DGA 64

Query: 224 ERMPSF-----GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           ER+ S         P+ +T++SM++   +AG +E A  ++D    E    D  +++TL+ 
Sbjct: 65  ERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLS 124

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            Y   G     L V+ EM   G+ P+++T+ +L+    +A    Q   +  +M + GL  
Sbjct: 125 GYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRM 184

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N  T+ +L+  + +  + +D L    EM++ G+Q SV  YN L+     +G  D A E+ 
Sbjct: 185 NEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELI 244

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
            +M+ ++  +PD  T+S++I+     G +  A  +  +ML+ G  P+    +SLI+   +
Sbjct: 245 REME-AKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCE 303

Query: 459 AQRTDDVVRALNRLPELGITPDD 481
            +R +D       + +LG+ PD+
Sbjct: 304 EKRLNDACELFENMLQLGVQPDE 326



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 152/332 (45%), Gaps = 16/332 (4%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   +    K  +L++A  L   M +RG++ + VTF+ LI         + A+   
Sbjct: 150 DVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAV 209

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  P  + Y+++I+ Y + G +++A  L      ++ + D   +ST+I  Y   
Sbjct: 210 EEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKV 269

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           GN D    + ++M   GV P+ ITY++L+  +   KR      +++ M   G+ P+  TY
Sbjct: 270 GNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTY 329

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+  + +    E  LS++ EM  KG+   V  Y+ L+   +    T EA  +   +  
Sbjct: 330 TTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL-Y 388

Query: 404 SENCQPDSWTFSSMITICS---------------CRGKVSEAEAMFNEMLEAGFEPNLFV 448
            E+  PD+  + +++  CS                +G + EA+ ++  ML+  ++ +  V
Sbjct: 389 HEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSV 448

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            + LI  + +       +    ++   G +P+
Sbjct: 449 YSILIHGHCRGGNVRKALSFHKQMLRSGFSPN 480



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 2/151 (1%)

Query: 331 MTDNGLSPNWNTYASLLRAY-GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           M  +G++PN  TY  L+RA   R R  E+ + V  +M+  G   +   YNTL+A     G
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRL-EEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAG 59

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
             D A  +   M+   N +P+  TF+SM+      G++  A  +F+EM+  G  P++   
Sbjct: 60  ELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSY 119

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +L+  Y K     + +   + + + G+ PD
Sbjct: 120 NTLLSGYCKVGCLHESLAVFSEMTQRGLVPD 150


>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 830

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 163/335 (48%), Gaps = 2/335 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNK 218
           K S +V  Y   +  + +     +A  LFD M   G+ P  VT++ ++    +M     +
Sbjct: 211 KYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGR 270

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
            +E  + M S G + D  T S++I A GR G ++ A       +   ++     ++++++
Sbjct: 271 ILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQ 330

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
           ++G AG +   L++ +EM+     P+ ITYN L  T  RA    +   +   MT  G+ P
Sbjct: 331 VFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMP 390

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N  TY +++ AYG+A   +D L ++ +MK+ G   +V  YN++LAM      T++  ++ 
Sbjct: 391 NAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVL 450

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
            +MK +  C P+  T+++M+ +CS  GK +    +  EM   GFEP+     +LI  Y +
Sbjct: 451 CEMKLN-GCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYAR 509

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
                D  +    + + G TP       LLN +  
Sbjct: 510 CGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAH 544



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 138/272 (50%), Gaps = 2/272 (0%)

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           M+   GR     +A  L+D    EK+ +D  A++T++  Y  +G +   ++++++M+ IG
Sbjct: 187 MVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIG 246

Query: 301 VKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           + P ++TYN +LD  G+  R W ++  +  EM   GL  +  T ++++ A GR    ++ 
Sbjct: 247 LDPTLVTYNVMLDVYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEA 306

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
                E+K  G +    +YN++L +    G   EA  I ++M+ + NC PDS T++ +  
Sbjct: 307 RKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDN-NCPPDSITYNELAA 365

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                G + E  A+ + M   G  PN    T++I  YGKA R DD +R  +++ +LG  P
Sbjct: 366 TYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAP 425

Query: 480 DDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 511
           +      +L ++ +  + E    V C  K N 
Sbjct: 426 NVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNG 457



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 167/350 (47%), Gaps = 6/350 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++YN  ++VF K     +A  +  +M D    PD++T++ L +        ++ +   + 
Sbjct: 323 VMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDT 382

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S G  P+A+TY+++IDAYG+AG  + A  L+ + ++     +   +++++ + G    
Sbjct: 383 MTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSR 442

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  + V  EMK  G  PN  T+N +L       +   V  + +EM + G  P+ +T+ +
Sbjct: 443 TEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNT 502

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ +Y R     D+  +Y EM + G    VT YN LL   A  G    A  + +DM+ ++
Sbjct: 503 LISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQ-TK 561

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +P+  ++S ++   S  G V   E +  E+ +    P+  +L +L+    K +    +
Sbjct: 562 GFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRGM 621

Query: 466 VRALNRLPELGITPDDRFCGCLL-----NVMTQTPKEELGKLVECVEKSN 510
            RA ++L + G  PD      +L     N M    +E L  + EC  + N
Sbjct: 622 ERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPN 671



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 124/268 (46%), Gaps = 5/268 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           V  YN  +       D   AE +  DM  +G KP+  ++S L+ C ++  N+  + +E  
Sbjct: 532 VTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNV--RGIEKV 589

Query: 224 ERMPSFG-CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           E+    G   P  +   +++ +  +  ++      +D+ +   ++ D    ++++ ++  
Sbjct: 590 EKEIYDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSR 649

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
              F     +   +   G++PN+ TYN L+D   R    W+ + + K + ++   P+  +
Sbjct: 650 NKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVS 709

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y ++++ + R    ++ + V  EM  KG+Q ++  YNT L+  A +   DEA E+   M 
Sbjct: 710 YNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFM- 768

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEA 430
              NC+P   T+  ++      GK  EA
Sbjct: 769 IEHNCRPSELTYKILVDGYCKAGKHEEA 796



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 139/319 (43%), Gaps = 9/319 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N  +  + +C     + +++ +M+  G  P   T++ L++          A    + M 
Sbjct: 500 FNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQ 559

Query: 228 SFGCDPDALTYSSMIDAYGRAGNV----EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + G  P+  +YS ++  Y +AGNV    ++   +YD      W +      TL+      
Sbjct: 560 TKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWIL----LRTLVLSNHKC 615

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            +  G    +++++  G KP+++  N++L    R K   + + +   + + GL PN  TY
Sbjct: 616 RHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTY 675

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             L+  Y R         V + ++    +  V  YNT++      G   EA  +  +M +
Sbjct: 676 NCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEM-T 734

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           ++  QP   T+++ ++  +      EA  +   M+E    P+      L+  Y KA + +
Sbjct: 735 TKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKHE 794

Query: 464 DVVRALNRLPELGITPDDR 482
           + +  + ++ E+ I+ DD+
Sbjct: 795 EAMDFVTKIKEIDISFDDK 813



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 50/99 (50%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +K F +   + +A R+  +M  +G++P  VT++T +S      L ++A E  
Sbjct: 706 DVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVI 765

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
             M    C P  LTY  ++D Y +AG  E A     + +
Sbjct: 766 RFMIEHNCRPSELTYKILVDGYCKAGKHEEAMDFVTKIK 804


>gi|414888268|tpg|DAA64282.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 868

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 147/636 (23%), Positives = 265/636 (41%), Gaps = 96/636 (15%)

Query: 108 DLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKL---KASKE 164
           DL + S T     S++     + L ++   +L+ M     A  A TY T      +A+  
Sbjct: 166 DLPAESRTALSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDP 225

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
            + +++ + +F + R  D +           V+PD  T++TL++ A + +L +++     
Sbjct: 226 PVPFDMLLGLFAEMRH-DASP---------SVRPDLTTYNTLLAAAAVRSLADQSEMLLH 275

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  PD ++Y  ++DA+  AGN+  A  L+          D +A+  L++ +   G
Sbjct: 276 TMLEAGVSPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVG 335

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                + V  +M+A G  P   TY  LLD  GR  R   V+ +++EM    + P+  TY 
Sbjct: 336 ATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMR-TAVPPDTATYN 394

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L R +G   + ++ + ++ +M + G+Q  +     ++A C   G   +A E+ E M + 
Sbjct: 395 VLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYM-TR 453

Query: 405 ENCQP--DSWT------------------FSSMITICS--------------CRGKV-SE 429
           E   P  D++T                  F+ M  I S               RG +  E
Sbjct: 454 EGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQE 513

Query: 430 AEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           AEA+F+ M   AG + +     +LI+ Y +  R DD V+A   + +    PD+R    +L
Sbjct: 514 AEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVL 573

Query: 489 NV-----MTQTPKEELGKLVECV---------------------------------EKSN 510
           N      +    KE+  +L   V                                  +++
Sbjct: 574 NAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTNRAS 633

Query: 511 SKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACK 568
           S    +  L+  E D   +++     L NS  +  D    + N L+ +         A +
Sbjct: 634 STHQVIASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQKGRAAR 693

Query: 569 LLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLG 628
           +L+  +   ++ ++   +   WSL +  +S+G AL A+ +W+N L   L   E+ P L  
Sbjct: 694 VLDQAVKFGLFPELYRDTKLVWSLDVHRMSMGGALVAVSVWLNKLYDRLVEDEDLPQLAS 753

Query: 629 INTGHGKHKYS--DKGL--ASVFESHLKE-LNAPFH 659
           +    G+ + S   +GL  A V  S L + L+A FH
Sbjct: 754 VVVLRGEMEKSTVTRGLPIAKVVYSFLNDTLSASFH 789


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 196/421 (46%), Gaps = 15/421 (3%)

Query: 170 VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
            T++  ++  D  KA  + D M ++GVKPD+  +S+ I+         +AVE    M + 
Sbjct: 156 ATLREAKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAAR 215

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
           G  PD LTYSS I A  +    + A GL    + +  + +   +S  I      G ++  
Sbjct: 216 GTPPDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETA 275

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           +++ +EM A+G+ P++ITY+ ++D   +  +      +  EM   G+  N  TY+ ++ A
Sbjct: 276 VDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGA 335

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
             +    E+ +++ REM+E G+   V  Y++ ++ CA  G  +EA  +  +M   E   P
Sbjct: 336 CAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMP-MEGVTP 394

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           ++ ++  +I+ C+ RG+  EA  +  EM   G  P++   ++ I    +A R +  +  L
Sbjct: 395 NAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLL 454

Query: 470 NRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIE-- 527
             +P  G+TP+       ++   +T + ++   VE + +  +  G    ++     I   
Sbjct: 455 REMPATGLTPNVISYNSAIDACAKTGRSKIA--VELLREMPAH-GLAPDVITYSAVIASC 511

Query: 528 --GDFKKEATELF-----NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT 580
             G   +EA +LF       I+ DV    CN  I+ C      E A  +L    T+ +  
Sbjct: 512 AMGRQWEEALDLFREMQRQGITPDV--VSCNTAINACAQGGWWEEALDVLGEMPTMGLVP 569

Query: 581 D 581
           D
Sbjct: 570 D 570



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 151/350 (43%), Gaps = 34/350 (9%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I Y++ +    K    ++A  L  +M + GV PD +T+S+ IS         +AV    
Sbjct: 326 IITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLR 385

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            MP  G  P+A++Y  +I A  + G    A  L    +      D   +S  I     A 
Sbjct: 386 EMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQAS 445

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            ++  L +  EM A G+ PN+I+YN+ +D   +  R      + +EM  +GL+P+  TY+
Sbjct: 446 RWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYS 505

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK-- 402
           +++ +    R  E+ L ++REM+ +G+   V   NT +  CA  G+ +EA ++  +M   
Sbjct: 506 AVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTM 565

Query: 403 --------------------------------SSENCQPDSWTFSSMITICSCRGKVSEA 430
                                           S+    PD+ ++   ++ CS  G   EA
Sbjct: 566 GLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEA 625

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             +  +ML  G  P++    S I    K  R  +    L ++P  G+ PD
Sbjct: 626 LVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPD 675



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 154/322 (47%), Gaps = 7/322 (2%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAV 220
           + +VI Y+  +    K    + A RL  +M  +GV  + +T+S +I +CA+      +AV
Sbjct: 288 APDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQW-EEAV 346

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
                M   G  PD +TYSS I A  + G  E A GL      E   + PNA S  I + 
Sbjct: 347 ALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEG--VTPNAISYGIVIS 404

Query: 281 GTA--GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
             A  G +   +++ +EM+A GV P++I Y+  +D   +A R  Q   + +EM   GL+P
Sbjct: 405 ACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTP 464

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N  +Y S + A  +    +  + + REM   G+   V  Y+ ++A CA     +EA ++F
Sbjct: 465 NVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLF 524

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
            +M+  +   PD  + ++ I  C+  G   EA  +  EM   G  P+     + I    K
Sbjct: 525 REMQ-RQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAK 583

Query: 459 AQRTDDVVRALNRLPELGITPD 480
             R  +++  L  +  +G+TPD
Sbjct: 584 GDRWKEIIDLLREMSTVGLTPD 605



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 153/352 (43%), Gaps = 36/352 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y+  +    K     +A  L   M  +GVKP+ + +S  IS  R       AV+  
Sbjct: 220 DVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLL 279

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR--------------------ARN 263
           + MP+ G  PD +TYS++IDA  + G  E AF L                       A+ 
Sbjct: 280 KEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKW 339

Query: 264 EKWR-------------IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
            +W              + P+   +S+ I      G ++  + +  EM   GV PN I+Y
Sbjct: 340 GQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISY 399

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
             ++    +  R  +   + +EM  +G+ P+   Y++ + A  +A   E  L + REM  
Sbjct: 400 GIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPA 459

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G+  +V  YN+ +  CA  G +  A E+  +M  +    PD  T+S++I  C+   +  
Sbjct: 460 TGLTPNVISYNSAIDACAKTGRSKIAVELLREMP-AHGLAPDVITYSAVIASCAMGRQWE 518

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           EA  +F EM   G  P++    + I    +    ++ +  L  +P +G+ PD
Sbjct: 519 EALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPD 570



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 144/314 (45%), Gaps = 3/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERM 226
           Y+  +      R  ++A  L   M  RG  PD +T+S+ I +CA+++    +AV     M
Sbjct: 189 YSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSAIAACAKVSRW-KEAVGLLRSM 247

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G  P+ + YS+ I A  + G  E A  L           D   +ST+I      G +
Sbjct: 248 KGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVIDACAKRGQW 307

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           +    +  EM   GV  N+ITY+ ++    +  +  +   + +EM +NG++P+  TY+S 
Sbjct: 308 EPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSST 367

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + A  +    E+ + + REM  +G+  +   Y  +++ CA  G   EA ++ ++M+ +  
Sbjct: 368 ISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQ-AHG 426

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             PD   +S+ I  C+   +  +A  +  EM   G  PN+    S I    K  R+   V
Sbjct: 427 VPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAV 486

Query: 467 RALNRLPELGITPD 480
             L  +P  G+ PD
Sbjct: 487 ELLREMPAHGLAPD 500



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 133/301 (44%), Gaps = 2/301 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI Y+  +    +    ++A  L  +M   G+ P+ +++++ I           AVE  
Sbjct: 430 DVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELL 489

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             MP+ G  PD +TYS++I +       E A  L+   + +    D  + +T I      
Sbjct: 490 REMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQG 549

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G ++  L+V  EM  +G+ P+ I+Y   +D   +  R  ++  + +EM+  GL+P+  +Y
Sbjct: 550 GWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISY 609

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
              + A       ++ L + R+M   G+   V  YN+ +  CA  G   EA  +   M +
Sbjct: 610 RFAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPT 669

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRT 462
                PD  +F++ I  C    +   A  +  EM   G  PN    LT++  C    ++ 
Sbjct: 670 F-GLAPDVNSFNAAIDACGNGDQWGTAVEVLFEMRALGVSPNEATYLTAMYACKRCGEKD 728

Query: 463 D 463
           D
Sbjct: 729 D 729



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/295 (20%), Positives = 117/295 (39%), Gaps = 42/295 (14%)

Query: 109 LDSCSATEDDVFSV--LR-----CLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKA 161
           +D+C+ T     +V  LR      L  D +    VI    M      AL L     +   
Sbjct: 473 IDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGI 532

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           + +V+  N  +    +    ++A  +  +M   G+ PD +++ T I      +   + ++
Sbjct: 533 TPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIID 592

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
               M + G  PDA++Y   + A     +V+   GL+  A                    
Sbjct: 593 LLREMSTVGLTPDAISYRFAMSAC----SVD---GLWKEA-------------------- 625

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                   L +  +M A+G+ P+++TYN+ ++   +  R  +   + ++M   GL+P+ N
Sbjct: 626 --------LVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVN 677

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
           ++ + + A G        + V  EM+  G+  +   Y T +  C   G  D+  +
Sbjct: 678 SFNAAIDACGNGDQWGTAVEVLFEMRALGVSPNEATYLTAMYACKRCGEKDDWMQ 732


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 166/322 (51%), Gaps = 5/322 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAV 220
           S   + YN  +    K  ++++A +L ++M  +G +PDN+T++T++S   RM  + ++A 
Sbjct: 77  SANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKV-SEAK 135

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIK 278
           ++F+ MPS G  PD + Y+ ++DA  + G V  A+GL+        ++ P+   ++TLI 
Sbjct: 136 QFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLID 195

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            +      D  + +++++ A G  P+ +TYN++L  + R     + + ++K+M D+G +P
Sbjct: 196 GFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAP 255

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N  TY+ +L  + R       L +Y EM EK     V L N ++ M       D+A ++ 
Sbjct: 256 NGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVL 315

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           E+M S     PD  T++ ++        V +A  +F+ M++ G  P++   + ++    K
Sbjct: 316 EEM-SKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCK 374

Query: 459 AQRTDDVVRALNRLPELGITPD 480
             +  D     +R+ E  + PD
Sbjct: 375 TNKVHDARVLFDRMIERKLVPD 396



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 165/359 (45%), Gaps = 40/359 (11%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF-STLISCARMNNLPNK 218
           K + ++I YN  +  F +    D+A +LF D++ +G  PD VT+ S L+  AR +N+ ++
Sbjct: 182 KVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNM-DE 240

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A E F++M   GC P+  TYS ++  + R GN+     LY+    +++  D    + +I 
Sbjct: 241 AEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVID 300

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
           +   A   D    V EEM  IG  P+++TYN LLD + +     +   ++  M DNG +P
Sbjct: 301 MLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAP 360

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  +Y+ +L    +     D   ++  M E+ +   V  +N L+      G  DEA ++ 
Sbjct: 361 DIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLL 420

Query: 399 EDMKSSENCQPDSWTFSSMI-TICS---------------------------------CR 424
            D+ S  N  PD  T ++++  +C                                  CR
Sbjct: 421 -DVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCR 479

Query: 425 -GKVSEAEAMFNEMLEAG--FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            GK+++A   F  M+++   F P++   T+L+    +A R D  V    ++   G  PD
Sbjct: 480 EGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPD 538



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 168/336 (50%), Gaps = 9/336 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y+  +    K   + +A  + ++M ++GV PD  T++ ++         ++A E F
Sbjct: 9   DVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELF 68

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M   GC  + + Y+++I+   +  N+E A+ L +   ++ +  D   ++T++      
Sbjct: 69  HKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRM 128

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQV-KTIYKEMTDNGLSPN 339
           G        ++ M + G  P+++ YN LLD +   G+    W + KT+  +M D  ++P+
Sbjct: 129 GKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTM--DMADRKVAPD 186

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY +L+  + R    ++ + +++++  KG       YN++L   A     DEA E+F+
Sbjct: 187 LITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFK 246

Query: 400 DMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
            M  S  C P+  T+S +++   CR G ++    ++ EM E  F P++ +  ++I    K
Sbjct: 247 KMVDS-GCAPNGATYSIVLS-GHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCK 304

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           A++ DD  + L  + ++G  PD      LL+ + +T
Sbjct: 305 AKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKT 340



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 132/288 (45%), Gaps = 3/288 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V+L N  + +  K + +D A ++ ++M   G  PD VT++ L+      NL +KA E
Sbjct: 289 SPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHE 348

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F  M   GC PD ++YS +++   +   V  A  L+DR    K   D   F+ L+    
Sbjct: 349 LFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLC 408

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AG  D   ++ + M    V P+ +T   L+  + R KR  +   +++ M + G   +  
Sbjct: 409 KAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVL 468

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFE 399
            +  +L    R       L  ++ M +   + S  V  Y TL+    + G  D+A + F+
Sbjct: 469 PHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQ 528

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            M  S  C PD   +++++     +G+  +A+ +   M E GF  + F
Sbjct: 529 QMTGS-GCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSDCF 575



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 140/312 (44%), Gaps = 13/312 (4%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +ST+I      G     L + EEM   GV P++ TY  ++D + RA +  +   ++
Sbjct: 9   DVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELF 68

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            +M + G S N   Y +L+    +    E    +  EM  KG +     YNT+L+    +
Sbjct: 69  HKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRM 128

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN--EMLEAGFEPNL 446
           G   EA + F+ M  S    PD   ++ ++      GKV+EA  +F   +M +    P+L
Sbjct: 129 GKVSEAKQFFDSM-PSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDL 187

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPKEELGKLVE- 504
               +LI  + + ++TD+ ++    +   G  PD   +   LL +  ++  +E  ++ + 
Sbjct: 188 ITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKK 247

Query: 505 CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-----SKDVKKAYCNCLIDLCVN 559
            V+   +  G    ++L      G+  +   EL+  +     S DV    CN +ID+   
Sbjct: 248 MVDSGCAPNGATYSIVLSGHCRVGNMAR-CLELYEEMTEKRFSPDV--LLCNAVIDMLCK 304

Query: 560 LNLLENACKLLE 571
              +++A K+LE
Sbjct: 305 AKKVDDAHKVLE 316



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 2/228 (0%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
           +K+ A  +V+ YN+ +    K   +DKA  LF  M+D G  PD V++S +++     N  
Sbjct: 319 SKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKV 378

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           + A   F+RM      PD +T++ ++D   +AG ++ A  L D         D    +TL
Sbjct: 379 HDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTL 438

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM--TDN 334
           +         D  + +++ M   G   +++ +N +L  + R  +  Q    +K M  +D 
Sbjct: 439 MHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDG 498

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
             SP+  TY +L+ A   A   +  +  +++M   G       YNTL+
Sbjct: 499 EFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLM 546


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/465 (23%), Positives = 216/465 (46%), Gaps = 8/465 (1%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASK-EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV 196
           IL  + +    + A+ +F    K    + + YN  +    K   LD A RL ++M+D G 
Sbjct: 16  ILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGF 75

Query: 197 KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256
            P+  +++T++      N    A+   E+M   GC PD ++Y+++I+   +   V+ A  
Sbjct: 76  APNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACR 135

Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           + D+      + +   + TL+  +   G+ DG + +  +M   G +PN ITYNN++  + 
Sbjct: 136 VMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLC 195

Query: 317 RAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
             ++      ++KEM ++G   P+  TY++++ +  ++   +D   +   M  KG   +V
Sbjct: 196 SGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNV 255

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y++LL      G  DEA  + + M  S  C P+  T++++I      G++ EA  +  
Sbjct: 256 VTYSSLLHGLCKAGKLDEATALLQRMTRS-GCSPNIVTYNTIIDGHCKLGRIDEAYHLLE 314

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
           EM++ G +PN+   T L+  + K  + +D +  +  + E G  P+      LL++  +  
Sbjct: 315 EMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCK-- 372

Query: 496 KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID 555
           K+E+ +  + +     K G V  ++     I G  K  AT++   +    +    NC+ D
Sbjct: 373 KDEVERACQLLSSMIQK-GCVPNVVSYNTVIAGLCK--ATKVHEGVLLLEQMLSNNCVPD 429

Query: 556 LCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLG 600
           +     +++  CK   + +  E++  IQ    T   +   SL  G
Sbjct: 430 IVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHG 474



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 150/319 (47%), Gaps = 7/319 (2%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRG-VKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           I YN  M      R LD A +LF +M + G   PD  T+ST++     +   + A    E
Sbjct: 185 ITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVE 244

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M S GC P+ +TYSS++    +AG ++ A  L  R        +   ++T+I  +   G
Sbjct: 245 AMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLG 304

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D   ++ EEM   G +PN++TY  LLD   +  +      + + M + G  PN  TY 
Sbjct: 305 RIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYN 364

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SLL  + +    E    +   M +KG   +V  YNT++A         E   + E M S+
Sbjct: 365 SLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSN 424

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            NC PD  TF+++I       +V  A  +FN + E+G  PNL    SL+    K++R D 
Sbjct: 425 -NCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQ 483

Query: 465 ---VVRALNRLPELGITPD 480
              ++R + R  + G +PD
Sbjct: 484 AEYLLREMTR--KQGCSPD 500



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 163/315 (51%), Gaps = 2/315 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  + +F K  ++++A +L   M+ +G  P+ V+++T+I+        ++ V   E+M 
Sbjct: 363 YNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQML 422

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S  C PD +T++++IDA  +   V++A+ L++  +      +   +++L+     +  FD
Sbjct: 423 SNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFD 482

Query: 288 GCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
               +  EM +  G  P++ITYN ++D + ++KR  +   ++ +M  +GL+P+  TY+ +
Sbjct: 483 QAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIV 542

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + +  + R+ ++  +V   M + G       Y TL+      G  D+A EI + +  S+ 
Sbjct: 543 ISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQ-LLLSKG 601

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             PD  TFS  I   S RG++ +A  +   ML AG  P+     +L++ +  A RT+D V
Sbjct: 602 SYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAV 661

Query: 467 RALNRLPELGITPDD 481
                + + G  PD+
Sbjct: 662 DLFEVMRQCGCEPDN 676



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 149/333 (44%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  V+ Y+  +    K   LD+A  L   M   G  P+ VT++T+I         ++A  
Sbjct: 252 SPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYH 311

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             E M   GC P+ +TY+ ++DA+ + G  E A GL +    + +  +   +++L+ ++ 
Sbjct: 312 LLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFC 371

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                +    +   M   G  PN+++YN ++  + +A +  +   + ++M  N   P+  
Sbjct: 372 KKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIV 431

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+ +++ A  +    +    ++  ++E G   ++  YN+L+         D+A  +  +M
Sbjct: 432 TFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREM 491

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
              + C PD  T++++I       +V  A  +F +ML  G  P+    + +I    K + 
Sbjct: 492 TRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRF 551

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
            D+    L  + + G  P     G L++   +T
Sbjct: 552 MDEANNVLELMLKNGFDPGAITYGTLIDGFCKT 584



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 1/239 (0%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A   L   T K   S ++I YN  +    K + +D+A +LF  ML  G+ PD+VT+S 
Sbjct: 482 DQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSI 541

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           +IS        ++A    E M   G DP A+TY ++ID + + GN++ A  +     ++ 
Sbjct: 542 VISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKG 601

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
              D   FS  I      G       + E M   G+ P+ +TYN LL     A R     
Sbjct: 602 SYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAV 661

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS-VYREMKEKGMQLSVTLYNTLLA 383
            +++ M   G  P+  TY +L+      +  +D L+ V + M + G +L+  L + L A
Sbjct: 662 DLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEA 720



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 2/115 (1%)

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M  KG++    ++ ++L    D G   +A   F +M  S+ C PDS T+++MI   S   
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREM--SKTCPPDSVTYNTMINGLSKSD 58

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           ++ +A  +  EM++ GF PN+F   +++  + KA R ++ +  L ++   G  PD
Sbjct: 59  RLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPD 113



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 5/185 (2%)

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           M   GL  +   + S+LR    A    D +  +REM +     SVT YNT++   +    
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVT-YNTMINGLSKSDR 59

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
            D+A  + E+M  +    P+ +++++++       +V  A  +  +M+  G  P++   T
Sbjct: 60  LDDAIRLLEEMVDN-GFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYT 118

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 510
           ++I    K  + D+  R ++++ + G  P+    G L++   +    +L   VE V K  
Sbjct: 119 TVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVG--DLDGAVELVRKMT 176

Query: 511 SKLGY 515
            + GY
Sbjct: 177 ER-GY 180


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 170/349 (48%), Gaps = 3/349 (0%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDML 192
           C I+LN +      A A       +        ++YN  +  + + RDL  A  +F+ M 
Sbjct: 337 CSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMK 396

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
            R ++PD++T++ LI+      +  KA +    M   G DP   T++++IDAYG AG +E
Sbjct: 397 SRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLE 456

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
             F +    + +  + D  +F +++K +   G     + + ++M    V PN   YN+++
Sbjct: 457 KCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSII 516

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           D    +    Q   + ++M ++G+S +  TY  LL+   R+   ++   +   ++ +G++
Sbjct: 517 DAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLR 576

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
             V  YNT+++ C + G TD+A E+ ++M +    +P   T+ ++++  +  G+V + E 
Sbjct: 577 PDVVSYNTIISACCNKGDTDKALELLQEM-NKYGIRPTLRTYHTLVSALASAGRVHDMEC 635

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           ++ +ML    EP+  +   ++  Y + +    V      + E GI  DD
Sbjct: 636 LYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFDD 684



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 167/357 (46%), Gaps = 7/357 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD--LDKAERLFDDMLDR 194
           I+ + +T    +   L+ F   LK    +  Y  ++ +   C+D  + KAE++ + ++  
Sbjct: 304 ILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHT 363

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G+ P  V ++TLI+          A   FE+M S    PD +TY+++I+   +   V  A
Sbjct: 364 GLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKA 423

Query: 255 FGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
             L      EK  +DP+   F+TLI  YGTAG  + C  V  +M+  G+K ++I++ +++
Sbjct: 424 EDLV--MEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVV 481

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
               +  +  +   I  +M    ++PN   Y S++ AY  +   E    +  +MK  G+ 
Sbjct: 482 KAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVS 541

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            S+  YN LL         DEA E+   +++ +  +PD  +++++I+ C  +G   +A  
Sbjct: 542 ASIVTYNLLLKGLCRSSQIDEAEELIYTLRN-QGLRPDVVSYNTIISACCNKGDTDKALE 600

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           +  EM + G  P L    +L+     A R  D+     ++    + P     G +++
Sbjct: 601 LLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVD 657



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 137/315 (43%), Gaps = 5/315 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I YN  +    K  DL+   RL D ML  G KP+ VT++ L+S        ++     + 
Sbjct: 230 ITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDE 289

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA-- 283
           M S    PD  TYS + D   R G       L+  A + K  +   A++  I L G    
Sbjct: 290 MASHSMFPDGFTYSILFDGLTRTGESRTMLSLF--AESLKKGVMLGAYTCSILLNGLCKD 347

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       V E +   G+ P  + YN L++   + +       I+++M    + P+  TY
Sbjct: 348 GKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITY 407

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+    +         +  EM++ G+  SV  +NTL+      G  ++ F +  DM+ 
Sbjct: 408 NALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQ- 466

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +  + D  +F S++      GK+ EA A+ ++M+     PN  V  S+I  Y ++  T+
Sbjct: 467 QKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTE 526

Query: 464 DVVRALNRLPELGIT 478
                + ++   G++
Sbjct: 527 QAFLLVEKMKNSGVS 541



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 149/333 (44%), Gaps = 44/333 (13%)

Query: 188 FDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMP-SFGCDP-DALTYSSMIDA 244
           F  ++  G +PD   ++ ++ +C    +L + A+    RM  S G  P DA +Y+ +I  
Sbjct: 145 FGLLVAAGARPDTFAWNKVVQACVAAGDL-DVALAMVRRMGRSEGAPPPDAFSYNVVIAG 203

Query: 245 YGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
             R+G    A  ++D   +    + PN   ++T+I  +   G+ +    + ++M   G K
Sbjct: 204 LWRSGKGSDALKVFDEMVD--MGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPK 261

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           PN++TYN LL  + RA R  + + +  EM  + + P+  TY+ L     R       LS+
Sbjct: 262 PNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSL 321

Query: 363 YREMKEKGMQL-----------------------------------SVTLYNTLLAMCAD 387
           + E  +KG+ L                                   +  +YNTL+     
Sbjct: 322 FAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQ 381

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           V     AF IFE MK S + +PD  T++++I        V++AE +  EM ++G +P++ 
Sbjct: 382 VRDLRGAFCIFEQMK-SRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVE 440

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              +LI  YG A + +     L+ + + GI  D
Sbjct: 441 TFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSD 473


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 178/345 (51%), Gaps = 12/345 (3%)

Query: 151 ALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A T++   L A  + E  L+NV M+ F +  +L  A ++FD+M  R V+P  VTF+TLIS
Sbjct: 170 AYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEM-RRSVQPTVVTFNTLIS 228

Query: 209 -CARMNNLPNKAVE-WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
              R  +L   AV+  ++ M   G  PD  TY ++I  + R G +E A  +++  R+   
Sbjct: 229 GMCRARDL--DAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTG- 285

Query: 267 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
            ++PNA  F+TLI  +   GN +  +++Y++M+  GV P+++ YN L++ + RA+     
Sbjct: 286 -VNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAA 344

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
           ++I +EM + GL P+  TY +L+    +    +  + + ++M EK + L    Y  L++ 
Sbjct: 345 ESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISG 404

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
            +  G   +A  +  +M  +   +PD+ T++ +I     +G V     +  EM   G +P
Sbjct: 405 LSKAGRPVDAERVLREMMEAA-LEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKP 463

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
            +     ++    K  +  +    L+ +  +G++PDD     LL+
Sbjct: 464 GVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLD 508



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 153/320 (47%), Gaps = 12/320 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS----CARMNNLPNKAV 220
           V+ +N  +    + RDLD  + L+ +M D GVKPD  T+  LI       RM N    AV
Sbjct: 220 VVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMEN----AV 275

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           + F  M   G +P+A+ ++++IDA+ + GNV     LY   R      D  A++ L+   
Sbjct: 276 KMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGL 335

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
             A N     ++ EEMK  G+KP+ +TY  L+D   +  +      I ++M +  +S + 
Sbjct: 336 CRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDE 395

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY +L+    +A    D   V REM E  ++   T Y  ++      G     F++ ++
Sbjct: 396 VTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKE 455

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI--QC-YG 457
           M+ ++  +P   T++ ++      G++  A+ + + ML  G  P+      L+  QC +G
Sbjct: 456 MQ-NKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHG 514

Query: 458 KAQRTDDVVRALNRLPELGI 477
           K   ++++  +   +P+  +
Sbjct: 515 KVANSEELESSKGMVPDFAV 534



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 141/297 (47%), Gaps = 4/297 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y   +K F +   ++ A ++F++M D GV P+ V F+TLI         N  ++ +
Sbjct: 254 DVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLY 313

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   G  PD + Y+++++   RA N++ A  + +  +N   + D   ++TLI      
Sbjct: 314 QDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKD 373

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D  +++ ++M    V  + +TY  L+  + +A RP   + + +EM +  L P+  TY
Sbjct: 374 GKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTY 433

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++ A+ R    +    + +EM+ KG +  V  YN ++     +G    A  +   M +
Sbjct: 434 TMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLN 493

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
                PD  T++ ++      GKV+ +E + +     G  P+  V TSLI    K +
Sbjct: 494 I-GVSPDDITYNILLDGQCKHGKVANSEELES---SKGMVPDFAVYTSLISELAKKK 546



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 182/398 (45%), Gaps = 38/398 (9%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVE-WFERMPSFGCDPDALT-YSSMIDAYGRAGN 250
           D G+ PD  +   L++  R  +LP         R+PS    P+A T Y  ++DA      
Sbjct: 131 DEGLLPDACSL-VLLALRRGISLPAPVCSGLMSRLPS---TPEAYTFYLQLLDA------ 180

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
                G+    R          F+ L++ +   G       V++EM+   V+P ++T+N 
Sbjct: 181 -----GMAPETR---------LFNVLMRDFVRLGELVSARKVFDEMRR-SVQPTVVTFNT 225

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L+  M RA+    V  +YKEM+D G+ P+  TY +L++ + R    E+ + ++ EM++ G
Sbjct: 226 LISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTG 285

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSE 429
           +  +  ++ TL+      G  +   ++++DM+      PD   +++++  +C  R  +  
Sbjct: 286 VNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMR-VRGVMPDLVAYNALVNGLCRAR-NLKA 343

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           AE++  EM  AG +P+    T+LI    K  + D  +    ++ E  ++ D+     L++
Sbjct: 344 AESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALIS 403

Query: 490 VMTQTPK-----EELGKLVE-CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543
            +++  +       L +++E  +E  N+    V+     + D++  FK    E+ N   K
Sbjct: 404 GLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKL-LKEMQNKGKK 462

Query: 544 DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 581
                Y   +  LC  L  ++NA  LL   L + V  D
Sbjct: 463 PGVVTYNVIMNGLC-KLGQMKNADMLLHAMLNIGVSPD 499



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 44/192 (22%)

Query: 161 ASKEVILYNVTMKVF-----RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
           A KEV L  VT         +  R +D AER+  +M++  ++PDN T             
Sbjct: 387 AEKEVSLDEVTYTALISGLSKAGRPVD-AERVLREMMEAALEPDNTT------------- 432

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
                                 Y+ +IDA+ R G+V+  F L    +N+  +     ++ 
Sbjct: 433 ----------------------YTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNV 470

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           ++      G       +   M  IGV P+ ITYN LLD  G+ K   +V    +  +  G
Sbjct: 471 IMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLD--GQCKH-GKVANSEELESSKG 527

Query: 336 LSPNWNTYASLL 347
           + P++  Y SL+
Sbjct: 528 MVPDFAVYTSLI 539


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 172/341 (50%), Gaps = 5/341 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ + +      +++A R+ D+M    + P+ +T + ++          +A + FE   
Sbjct: 257 YNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESAS 316

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC+PD +TY S+ID  G+ G V+ A+ L+++  +     +P  +++LI+ +   G  +
Sbjct: 317 QRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKE 376

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V++E+   G KP++   N  +D + +A    + + I++++   G  P+  +Y+ L+
Sbjct: 377 DGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILI 436

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +A    +T +++  MK++G  L    YN ++      G   +A+EI E+MK  E C
Sbjct: 437 HGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK--EKC 494

Query: 408 -QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            QP   T+ +++   +   ++ EA  +F E    G E N+ + +SLI  +GK  R D+  
Sbjct: 495 VQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAY 554

Query: 467 RALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
             L  + + G+TP+      LL+ + +   EE+ + + C +
Sbjct: 555 LILEEMMKKGLTPNVYTWNSLLDALVKA--EEINEALVCFQ 593



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 143/306 (46%), Gaps = 8/306 (2%)

Query: 181 LDKAERLFDDMLDRGV------KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           L +A RL D +L   V      +P    ++ LI        P +A+E   +M   G +  
Sbjct: 20  LVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVG 79

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
              +++++ A  R G V  A  L D  +      D   ++  I  +G AGN D     + 
Sbjct: 80  VHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFH 139

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           E+KA G+KP+ ++Y +++  + +A R  + + ++ +M      P    Y +++  YG A 
Sbjct: 140 ELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAG 199

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             ED   +   ++E+G   SV  +N++L         DEA  +FE MK  ++ +P+S T+
Sbjct: 200 RFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK--KDAEPNSSTY 257

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + +I +    G+V EA  + +EM  A   PNL  +  ++    KA++ ++  +      +
Sbjct: 258 NIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQ 317

Query: 475 LGITPD 480
            G  PD
Sbjct: 318 RGCNPD 323



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 140/300 (46%), Gaps = 3/300 (1%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           +   ++F +++ RG KPD    +T + C        K    FE + S+G  PD  +YS +
Sbjct: 376 EDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSIL 435

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I    +AG       ++   + + + +D  A++ ++  +  +G       + EEMK   V
Sbjct: 436 IHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCV 495

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           +P + TY  ++D + +  R  +   +++E    G+  N   Y+SL+  +G+    ++   
Sbjct: 496 QPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYL 555

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-I 420
           +  EM +KG+  +V  +N+LL         +EA   F+ MK  + C P+++T+S +I  +
Sbjct: 556 ILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMK-CPPNTYTYSILINGL 614

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           C  + K ++A   + +M + G  PN+   T++I    K     D      R    G  PD
Sbjct: 615 CRVQ-KYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPD 673



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/392 (22%), Positives = 167/392 (42%), Gaps = 36/392 (9%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A LA+     +LK       Y V +    + R  ++A  L   M + G +     F+T
Sbjct: 27  DDAVLAVA-VMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTT 85

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           L+           A+   + +     +PD + Y+  ID +G+AGNV+MA   +   + + 
Sbjct: 86  LVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQG 145

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
            + D  +++++I +   AG       ++ +M+A    P    YN ++   G A R     
Sbjct: 146 LKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAY 205

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + + + + G  P+  ++ S+L   G+ R  ++ LS++  MK K  + + + YN ++ M 
Sbjct: 206 KLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK-KDAEPNSSTYNIIIDML 264

Query: 386 ADVGYTDEAFEIFEDMK----------------------------------SSENCQPDS 411
              G  +EA+ I ++M+                                  S   C PD 
Sbjct: 265 CLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDC 324

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            T+ S+I     +G+V EA  +F +ML+AG   N  V TSLI+ +    R +D  +    
Sbjct: 325 VTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKE 384

Query: 472 LPELGITPDDRFCGCLLNVMTQTPKEELGKLV 503
           L   G  PD       ++ + +  + E G+++
Sbjct: 385 LIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMI 416



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 103/464 (22%), Positives = 211/464 (45%), Gaps = 53/464 (11%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++LYNV +  F K  ++D A + F ++  +G+KPD+V+++++I          +A E F
Sbjct: 114 DIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELF 173

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR------------------NEK 265
            +M +    P A  Y++MI  YG AG  E A+ L +R R                   +K
Sbjct: 174 AQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKK 233

Query: 266 WRID--------------PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
            ++D              PN+  ++ +I +    G  +    + +EM+   + PN++T N
Sbjct: 234 RKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVN 293

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            ++D + +A++  +   I++  +  G +P+  TY SL+   G+    ++   ++ +M + 
Sbjct: 294 IMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDA 353

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G   +  +Y +L+      G  ++  ++F+++     C+PD    ++ +      G+V +
Sbjct: 354 GHNANPVVYTSLIRNFFIHGRKEDGHKVFKEL-IRRGCKPDLTLLNTYMDCVFKAGEVEK 412

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
              +F ++   GF P++   + LI    KA +  +     + + + G   D R    +++
Sbjct: 413 GRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVD 472

Query: 490 VMTQTPK-----EELGKLVE-CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF---NS 540
              ++ K     E L ++ E CV+ + +  G +V  L +   ++     EA  LF    S
Sbjct: 473 GFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLD-----EAYMLFEEAKS 527

Query: 541 ISKDVKKAYCNCLIDLCVNLNLLENACKLLE----LGLTLEVYT 580
              ++     + LID    +  ++ A  +LE     GLT  VYT
Sbjct: 528 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYT 571



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 128/263 (48%), Gaps = 1/263 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +    K     +   +F  M  +G   D   ++ ++     +   +KA E  E M 
Sbjct: 432 YSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK 491

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                P   TY +++D   +   ++ A+ L++ A+++   ++   +S+LI  +G  G  D
Sbjct: 492 EKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRID 551

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + EEM   G+ PN+ T+N+LLD + +A+   +    ++ M +    PN  TY+ L+
Sbjct: 552 EAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILI 611

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               R +        +++M+++G+  +V  Y T+++  A VG   +A+ +FE  K++   
Sbjct: 612 NGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGI 671

Query: 408 QPDSWTFSSMITICSCRGKVSEA 430
            PD+ +F+++I   S   +  EA
Sbjct: 672 -PDAASFNALIEGMSNANRAMEA 693


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 154/322 (47%), Gaps = 7/322 (2%)

Query: 163  KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG-VKPDNVTFSTLISCARMNNLPNKAVE 221
            + VIL+NV +K     R LD A  LF +M + G   PD  T+ST++     +   + A  
Sbjct: 910  QNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACR 969

Query: 222  WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
              E M S GC P+ +TYSS++    +AG ++ A  L  R        +   ++T+I  + 
Sbjct: 970  LVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHC 1029

Query: 282  TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
              G  D   ++ EEM   G +PN++TY  LLD   +  +      + + M + G  PN  
Sbjct: 1030 KLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLF 1089

Query: 342  TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            TY SLL  + +    E    +   M +KG   +V  YNT++A         E   + E M
Sbjct: 1090 TYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQM 1149

Query: 402  KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             S+ NC PD  TF+++I       +V  A  +FN + E+G  PNL    SL+    K++R
Sbjct: 1150 LSN-NCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRR 1208

Query: 462  TDD---VVRALNRLPELGITPD 480
             D    ++R + R  + G +PD
Sbjct: 1209 FDQAEYLLREMTR--KQGCSPD 1228



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 154/335 (45%), Gaps = 3/335 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI Y   +  F +  DLD A  L   M +RG +P+ +T++ ++      N   +A +  +
Sbjct: 335 VITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQ 394

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   GC PDA+ YS++I  + +AG +  A  L ++      R D    STLI     A 
Sbjct: 395 MMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAA 454

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D    +      +   P+++ Y+ L+  + +AKR  + ++    M  N   P+  TY 
Sbjct: 455 AIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYN 514

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKS 403
           S++    ++R   D   ++  M+  G+   V  Y+ ++ + C D    D AF++ E MK 
Sbjct: 515 SVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKD-NNLDSAFKMLERMKE 573

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           ++ C PD  T+S++I      G V +A  +F EML  G  PNL    +LI    K  + +
Sbjct: 574 AK-CVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVE 632

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
                L  + +   TPD     CL+N +    + E
Sbjct: 633 QAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLE 667



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 157/344 (45%), Gaps = 2/344 (0%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASK-EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV 196
           IL  + +    + A+ +F    K    + + YN  +    K   LD A RL ++M+D G 
Sbjct: 202 ILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGF 261

Query: 197 KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256
            P+  +++T++      N    A+   E+M + GC PD ++Y+++I+   +   V+ A  
Sbjct: 262 APNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACR 321

Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           + D+      + +   + TL+  +   G+ DG + +  +M   G +PN ITYNN++    
Sbjct: 322 VMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFC 381

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           R     +   + + M   G  P+   Y++++  + +A    +   +  +M  +G +  V 
Sbjct: 382 RRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVA 441

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
             +TL+         D A E+   M    +C PD   +S +I       ++ EAE+  + 
Sbjct: 442 CLSTLIDALCKAAAIDSAQELLR-MSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDV 500

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           M++    P++    S++    K++R +D     +R+   G+ PD
Sbjct: 501 MVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPD 544



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 126/261 (48%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           +A  L   +  +  + +V+ Y++ +    K + L +AE   D M+     PD VT+++++
Sbjct: 458 SAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVV 517

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                +   N A   F+RM + G  PD +TYS +I ++ +  N++ AF + +R +  K  
Sbjct: 518 DGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCV 577

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   +S LI     AG  D   +V++EM   G  PN++TYN L+D + +  +  Q   +
Sbjct: 578 PDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEM 637

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            + M     +P+  TY  L+     A   E+   V REMK+KG       Y TLL     
Sbjct: 638 LEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQK 697

Query: 388 VGYTDEAFEIFEDMKSSENCQ 408
               +   ++ ++M+++E  Q
Sbjct: 698 TNNLELVEQLLKEMEATEEGQ 718



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 172/389 (44%), Gaps = 7/389 (1%)

Query: 94   SYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALT 153
            +Y T  +SLVK     D+C   ED V     C  +       +  L      D A   L 
Sbjct: 950  TYSTIVDSLVKSGKVDDACRLVEDMVSK--GCSPNVVTYSSLLHGLCKAGKLDEATALLQ 1007

Query: 154  YFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
              T     S  ++ YN  +    K   +D+A  L ++M+D G +P+ VT++ L+      
Sbjct: 1008 RMTRS-GCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKC 1066

Query: 214  NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
                 A+   E M   G  P+  TY+S++D + +   VE A  L      +    +  ++
Sbjct: 1067 GKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSY 1126

Query: 274  STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
            +T+I     A      + + E+M +    P+++T+N ++D M +  R      ++  + +
Sbjct: 1127 NTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQE 1186

Query: 334  NGLSPNWNTYASLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLLAMCADVGYTD 392
            +G +PN  TY SL+    ++R  +    + REM +++G    +  YNT++         D
Sbjct: 1187 SGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVD 1246

Query: 393  EAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
             A+++F  M  S+   PD  T+S +I ++C  R  + EA  +   ML+ GF+P      +
Sbjct: 1247 RAYKLFLQML-SDGLAPDDVTYSIVISSLCKWR-FMDEANNVLELMLKNGFDPGAITYGT 1304

Query: 452  LIQCYGKAQRTDDVVRALNRLPELGITPD 480
            LI  + K    D  +  L  L   G  PD
Sbjct: 1305 LIDGFCKTGNLDKALEILQLLLSKGSYPD 1333



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 158/354 (44%), Gaps = 2/354 (0%)

Query: 162  SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
            S  V+ Y+  +    K   LD+A  L   M   G  P+ VT++T+I         ++A  
Sbjct: 980  SPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYH 1039

Query: 222  WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
              E M   GC P+ +TY+ ++DA+ + G  E A GL +    + +  +   +++L+ ++ 
Sbjct: 1040 LLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFC 1099

Query: 282  TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                 +    +   M   G  PN+++YN ++  + +A +  +   + ++M  N   P+  
Sbjct: 1100 KKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIV 1159

Query: 342  TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            T+ +++ A  +    +    ++  ++E G   ++  YN+L+         D+A  +  +M
Sbjct: 1160 TFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREM 1219

Query: 402  KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
               + C PD  T++++I       +V  A  +F +ML  G  P+    + +I    K + 
Sbjct: 1220 TRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRF 1279

Query: 462  TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGY 515
             D+    L  + + G  P     G L++   +T    L K +E ++   SK  Y
Sbjct: 1280 MDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGN--LDKALEILQLLLSKGSY 1331



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 157/379 (41%), Gaps = 39/379 (10%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
           +L  + +P  A +   +   +     E+   N  + V  K     +A  LF   ++    
Sbjct: 99  VLQRLIDPGAALVFFEWAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWG 158

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFG--------------------------- 230
            D VT+STLIS          A E F+ M   G                           
Sbjct: 159 GDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLH 218

Query: 231 -------CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYG 281
                  C PD++TY++MI+   ++  ++ A  L +   +  +   PN FS  T++  + 
Sbjct: 219 FREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFA--PNVFSYNTVLHGFC 276

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A   +  L + E+M   G  P++++Y  +++ + +  +  +   +  +M   G  PN  
Sbjct: 277 KANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVI 336

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +L+  + R    +  + + R+M E+G + +   YN ++ +       + A ++ + M
Sbjct: 337 TYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMM 396

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             +  C PD+  +S++I+     GK+ EA  +  +M+  G  P++  L++LI    KA  
Sbjct: 397 IQT-GCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAA 455

Query: 462 TDDVVRALNRLPELGITPD 480
            D     L     +   PD
Sbjct: 456 IDSAQELLRMSIGMDCAPD 474



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 169/412 (41%), Gaps = 38/412 (9%)

Query: 146  DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
            D A   L   T K   S ++I YN  +    K + +D+A +LF  ML  G+ PD+VT+S 
Sbjct: 1210 DQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSI 1269

Query: 206  LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
            +IS        ++A    E M   G DP A+TY ++ID + + GN++ A  +     ++ 
Sbjct: 1270 VISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKG 1329

Query: 266  WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
               D   FS  I      G       + E M   G+ P+ +TYN LL     A       
Sbjct: 1330 SYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAV 1389

Query: 326  TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS-VYREMKEKGMQLS---------- 374
             +++ M   G  P+  TY +L+      +  +D L+ V + M + G +L+          
Sbjct: 1390 DLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEAS 1449

Query: 375  ------VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
                  V L   ++ M    G   +A ++FE M      Q +   +S+M+ +     +  
Sbjct: 1450 IEVEADVRLGCAIVDMFGKCGSPQDARKVFEGMD-----QRNVVLWSAMLGVYVFHKQEE 1504

Query: 429  EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP-ELGITPDDRFCGCL 487
            +A  ++  M   G EP+     SL+     A   D  V     +  + G+ P      C+
Sbjct: 1505 QAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCV 1564

Query: 488  LNVMTQTPKEELGKLVECVEKSNSKLGYVVK-------LLLEEQDIEGDFKK 532
            +++        LG+L    E  +  LG   K        LL    I GDF++
Sbjct: 1565 IDL--------LGRLGLVNEAEDLMLGMPCKPSAATWNCLLSAYKICGDFER 1608



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 143/341 (41%), Gaps = 34/341 (9%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I YN  M VF +  D+++A ++   M+  G  PD + +ST+IS         +A +  E+
Sbjct: 371 ITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQ 430

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   GC PD    S++IDA  +A  ++ A  L   +       D  A+S LI     A  
Sbjct: 431 MIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKR 490

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                +  + M      P+++TYN+++D + +++R      ++  M   G+ P+  TY+ 
Sbjct: 491 LPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSI 550

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM---- 401
           ++ ++ +    +    +   MKE      V  Y+ L+      G  D+AF++F++M    
Sbjct: 551 VIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCG 610

Query: 402 ------------------------------KSSENCQPDSWTFSSMITICSCRGKVSEAE 431
                                            ++C PDS T++ +I       ++ EA 
Sbjct: 611 CAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAW 670

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
            +  EM + G  P+     +L++   K    + V + L  +
Sbjct: 671 RVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEM 711



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 172/374 (45%), Gaps = 13/374 (3%)

Query: 230  GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT--AGNFD 287
            G + D  T + ++ A  R    + A  +Y   RN K    PN F+  I ++G   AG+  
Sbjct: 839  GYNHDTYTCNCLLQALLRLKRPKDALQVY---RN-KLCCSPNMFTFTILIHGLCRAGDIG 894

Query: 288  GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASL 346
                + +EM   GV  N+I +N ++  +  A++      ++KEM ++G   P+  TY+++
Sbjct: 895  TAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTI 954

Query: 347  LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
            + +  ++   +D   +  +M  KG   +V  Y++LL      G  DEA  + + M  S  
Sbjct: 955  VDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRS-G 1013

Query: 407  CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            C P+  T++++I      G++ EA  +  EM++ G +PN+   T L+  + K  + +D +
Sbjct: 1014 CSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAI 1073

Query: 467  RALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI 526
              +  + E G  P+      LL++  +  K+E+ +  + +     K G V  ++     I
Sbjct: 1074 GLVEVMVEKGYVPNLFTYNSLLDMFCK--KDEVERACQLLSSMIQK-GCVPNVVSYNTVI 1130

Query: 527  EGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRS 586
             G  K  AT++   +    +    NC+ D+     +++  CK   + +  E++  IQ   
Sbjct: 1131 AGLCK--ATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESG 1188

Query: 587  PTQWSLHLKSLSLG 600
             T   +   SL  G
Sbjct: 1189 CTPNLVTYNSLVHG 1202


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 180/376 (47%), Gaps = 7/376 (1%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVI-LYNVTMKVFRKCRDLDKAERLFDDMLDRGV 196
           IL+ +   +  ALA+  F     AS   + +YN  M V+ +     K + L D M  RG 
Sbjct: 169 ILSVLGKANQEALAVEIFARAEAASGNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGC 228

Query: 197 KPDNVTFSTLISCARMNN---LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           +PD V+F+TLI+ AR+ +   + N A+E    +   G  PD +TY+++I A  R  N+E 
Sbjct: 229 EPDLVSFNTLIN-ARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEE 287

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  +Y+     + + D   ++ +I +YG  G       +++++++ G  P+ +TYN+LL 
Sbjct: 288 AVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLY 347

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
              R     +VK I ++M   G   +  TY +++  YG+    +    +Y +MK  G   
Sbjct: 348 AFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSP 407

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
               Y  L+          EA E+  +M ++   +P   TFS++I   +  GK  EAE  
Sbjct: 408 DAVTYTVLIDSLGKANMIKEAAEVMSEMLNA-RVKPTLRTFSALICGYAKAGKRVEAEET 466

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           F+ ML +G +P+    + ++    +   +   ++    +      PD      +L V+ +
Sbjct: 467 FDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGK 526

Query: 494 TPKEE-LGKLVECVEK 508
             +EE + K+V+ +E+
Sbjct: 527 ENREEDVHKVVKDMEE 542



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 130/592 (21%), Positives = 237/592 (40%), Gaps = 78/592 (13%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + YN  +  F +  ++DK + + +DM+  G   D +T++T+I         + A + +
Sbjct: 338 DAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLY 397

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  PDA+TY+ +ID+ G+A  ++ A  +     N + +     FS LI  Y  A
Sbjct: 398 SDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKA 457

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G        ++ M   G+KP+ + Y+ +LD + R     +   +Y+EM  +   P+   Y
Sbjct: 458 GKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALY 517

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLAMC----------------- 385
             +LR  G+    ED   V ++M+E  GM   V     +   C                 
Sbjct: 518 EVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLAISQGCE 577

Query: 386 -------ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
                   D G      E+FE + S E C+ D   +  M+ +    G  S+AE +   M 
Sbjct: 578 LDQYGKARDFGLFCGTEELFEGLLSKE-CKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMK 636

Query: 439 EAGFEPNLFVLTSLIQCY---GKAQRTDDVVR---------------------------- 467
           EAG EP +  +  L+  Y   G+ +  + V+                             
Sbjct: 637 EAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHN 696

Query: 468 -ALNRLPEL---GITPDDRFCGCLLNV--MTQTPKEELGKLVECVEKSNSKLGYVVKLLL 521
            A+ +L E+   G+ PD R   C +    ++Q   E +  L++ +  +   L   ++LL 
Sbjct: 697 VAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAI-VLLKALRDTGFDLP--IRLLT 753

Query: 522 EEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT- 580
           E+ D          E    +  +    + N L DL     L   A  + +L +   +Y  
Sbjct: 754 EKSDSLVSEVDNCLEKLGPLEDNAAFNFVNALEDLLWAFELRATASWVFQLAVKRSIYRH 813

Query: 581 DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLS---------KALESGEEFPPLLGINT 631
           D+   +   W    + +S G+AL  L +W++ +           +L+     P  + + T
Sbjct: 814 DVFRVAEKDWGADFRKMSAGSALVGLTLWLDHMQAKYFYFWQDASLQGYPLSPKSVVLIT 873

Query: 632 GHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRS 683
           G    +Y+   L S  ++ L E+ +PF     + G  +    + + WL+  S
Sbjct: 874 GTA--EYNMVSLNSTLKAFLWEMGSPFLPCKTRSGLLVAKAHSLRMWLKDSS 923



 Score = 42.7 bits (99), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 45/226 (19%), Positives = 88/226 (38%), Gaps = 11/226 (4%)

Query: 122 VLRCLGDDFLEQDCVIILNNM-----TNPDTAALALTY---FTNKLKASKEVILYNVTMK 173
           +LR LG +  E+D   ++ +M      N       L     F +     +  I     + 
Sbjct: 520 MLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLAISQGCELD 579

Query: 174 VFRKCRDLD---KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
            + K RD       E LF+ +L +  K D   +  ++   R +   +KA +    M   G
Sbjct: 580 QYGKARDFGLFCGTEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAG 639

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
            +P   T   ++ +Y  +G  E A  + D  + E   +    +S++I  Y   G+ +  +
Sbjct: 640 VEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAI 699

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
               EMK  G++P+   +   +     ++   +   + K + D G 
Sbjct: 700 QKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKALRDTGF 745


>gi|302833221|ref|XP_002948174.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
 gi|300266394|gb|EFJ50581.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
          Length = 1001

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 154/296 (52%), Gaps = 1/296 (0%)

Query: 199 DNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
           D  +++  IS        ++A+E  + M S   + +  TY+++++   + G + +A  +Y
Sbjct: 143 DVYSYTATISLCIHGQDVDRALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIY 202

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
           +  R      +   ++TL+ +YG  G ++  ++V + MK  GV+P + TYN L+      
Sbjct: 203 NSMRAVNCMPNVVTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMC 262

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
            +P +   +Y+ +  +G +PN  TY +L+ AYG+       L VY+EM  + M  SV  Y
Sbjct: 263 NQPREALAVYQRLLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITY 322

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           ++L++ C   G  + A  IF +M+  + C P++ T++S++T C+  G+  +A  +F +M 
Sbjct: 323 SSLISACEKAGQWETALRIFNEMQ-QDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMN 381

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
             G  P++   T+LI  Y +  +    ++A +++   G  PD      +++ + +T
Sbjct: 382 AHGCTPDVVTYTALISAYERGGQWQKALQAFHKMCVQGCKPDAIVYNAIIDTLWET 437



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 119/237 (50%), Gaps = 3/237 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  + V+ K    ++A  + D M   GV+P   T++TLI    M N P +A+  ++
Sbjct: 214 VVTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQ 273

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           R+ S G  P++ TY+++I AYG+   +  A  +Y     +        +S+LI     AG
Sbjct: 274 RLLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAG 333

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            ++  L ++ EM+     PN +TYN+L+    +  +  +   ++++M  +G +P+  TY 
Sbjct: 334 QWETALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYT 393

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT---DEAFEIF 398
           +L+ AY R    +  L  + +M  +G +    +YN ++    + G      +A ++F
Sbjct: 394 ALISAYERGGQWQKALQAFHKMCVQGCKPDAIVYNAIIDTLWETGIIWAQGKALQLF 450



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 93/411 (22%), Positives = 172/411 (41%), Gaps = 44/411 (10%)

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           D  +Y++ I       +V+ A  L    R+     + + ++ L+ +    G     L++Y
Sbjct: 143 DVYSYTATISLCIHGQDVDRALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIY 202

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
             M+A+   PN++TYN L+D  G+  +  +   +   M   G+ P   TY +L+ A    
Sbjct: 203 NSMRAVNCMPNVVTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMC 262

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
               + L+VY+ +   G   + T YN L++         +A E++++M   +N      T
Sbjct: 263 NQPREALAVYQRLLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLR-QNMDRSVIT 321

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           +SS+I+ C   G+   A  +FNEM +    PN     SL+    +  + +       ++ 
Sbjct: 322 YSSLISACEKAGQWETALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMN 381

Query: 474 ELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE 533
             G TPD         V+T T       L+   E+                   G ++K 
Sbjct: 382 AHGCTPD---------VVTYT------ALISAYERG------------------GQWQK- 407

Query: 534 ATELFNSISKDVKKA---YCNCLIDLCVNLNLLENACKLLELGLTL----EVYTDIQSRS 586
           A + F+ +     K      N +ID      ++    K L+L +T       + +   R 
Sbjct: 408 ALQAFHKMCVQGCKPDAIVYNAIIDTLWETGIIWAQGKALQLFMTAVQQGHFHQEPLVRR 467

Query: 587 PTQWSLHLKSLSLGAALTALHIWINDLSK-ALESG-EEFPPLLGINTGHGK 635
           P +  ++L +++ G A+  L+ W+ +L + A+E G +  P  L I T  GK
Sbjct: 468 PGRVEVNLHAMTAGVAMVCLYCWLLELRRIAIEKGPQHLPAALAIVTDMGK 518



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 112/256 (43%), Gaps = 1/256 (0%)

Query: 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
           + V  Y   M V  KC  L  A  +++ M      P+ VT++TL+          +A+  
Sbjct: 177 RNVHTYTALMNVCIKCGKLPLALDIYNSMRAVNCMPNVVTYNTLVDVYGKLGQWERAIHV 236

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            + M   G +P   TY+++I A         A  +Y R  ++ +  +   ++ LI  YG 
Sbjct: 237 LDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGFTPNSTTYNALISAYGK 296

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
                  L VY+EM    +  ++ITY++L+    +A +      I+ EM  +   PN  T
Sbjct: 297 TTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQWETALRIFNEMQQDKCVPNTVT 356

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y SL+ A  +    E    V+ +M   G    V  Y  L++     G   +A + F  M 
Sbjct: 357 YNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTALISAYERGGQWQKALQAFHKM- 415

Query: 403 SSENCQPDSWTFSSMI 418
             + C+PD+  ++++I
Sbjct: 416 CVQGCKPDAIVYNAII 431



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 15/237 (6%)

Query: 99  YNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQ-----DCVIILNNMTNPDTAALALT 153
           YN+LV +   L       +    VL  +  + +E      + +II  NM N    ALA+ 
Sbjct: 217 YNTLVDVYGKLGQW----ERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVY 272

Query: 154 YFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
                   +     YN  +  + K   L KA  ++ +ML + +    +T+S+LIS     
Sbjct: 273 QRLLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKA 332

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
                A+  F  M    C P+ +TY+S++ A  + G  E A  ++++        D   +
Sbjct: 333 GQWETALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTY 392

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
           + LI  Y   G +   L  + +M   G KP+ I YN ++DT+      W+   I+ +
Sbjct: 393 TALISAYERGGQWQKALQAFHKMCVQGCKPDAIVYNAIIDTL------WETGIIWAQ 443


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 172/341 (50%), Gaps = 5/341 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ + +      +++A R+ D+M    + P+ +T + ++          +A + FE   
Sbjct: 125 YNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESAS 184

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC+PD +TY S+ID  G+ G V+ A+ L+++  +     +P  +++LI+ +   G  +
Sbjct: 185 QRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKE 244

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +++E+   G KP++   N  +D + +A    + + I++++   G  P+  +Y+ L+
Sbjct: 245 DGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILI 304

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +A    +T +++  MK++G  L    YN ++      G   +A+EI E+MK  E C
Sbjct: 305 HGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK--EKC 362

Query: 408 -QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            QP   T+ +++   +   ++ EA  +F E    G E N+ + +SLI  +GK  R D+  
Sbjct: 363 VQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAY 422

Query: 467 RALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
             L  + + G+TP+      LL+ + +   EE+ + + C +
Sbjct: 423 LILEEMMKKGLTPNVYTWNSLLDALVKA--EEINEALVCFQ 461



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 157/353 (44%), Gaps = 8/353 (2%)

Query: 134 DCVI---ILNNMTNPDTAALALTYFTNKLKASKEV--ILYNVTMKVFRKCRDLDKAERLF 188
           DCV    +++ +        A   F   L A      ++Y   ++ F      +   ++F
Sbjct: 191 DCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIF 250

Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
            +++ RG KPD    +T + C        K    FE + S+G  PD  +YS +I    +A
Sbjct: 251 KELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKA 310

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           G       ++   + + + +D  A++ ++  +  +G       + EEMK   V+P + TY
Sbjct: 311 GQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATY 370

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
             ++D + +  R  +   +++E    G+  N   Y+SL+  +G+    ++   +  EM +
Sbjct: 371 GAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMK 430

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKV 427
           KG+  +V  +N+LL         +EA   F+ MK  + C P+++T+S +I  +C  + K 
Sbjct: 431 KGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMK-CPPNTYTYSILINGLCRVQ-KY 488

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           ++A   + +M + G  PN+   T++I    K     D      R    G  PD
Sbjct: 489 NKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPD 541



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 144/314 (45%), Gaps = 4/314 (1%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
           A + F ++  +G+KPD+V+++++I          +A E F +M +    P A  Y++MI 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
            YG AG  E A+ L +R R         +F++++   G     D  L+++E MK    +P
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEP 120

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           N  TYN ++D +    R  +   I  EM    L PN  T   ++    +AR  E+   ++
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF 180

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICS 422
               ++G       Y +L+      G  DEA+ +FE M  +  N  P  +T  S+I    
Sbjct: 181 ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYT--SLIRNFF 238

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
             G+  +   +F E++  G +P+L +L + + C  KA   +        +   G  PD R
Sbjct: 239 IHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVR 298

Query: 483 FCGCLLNVMTQTPK 496
               L++ +T+  +
Sbjct: 299 SYSILIHGLTKAGQ 312



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 142/285 (49%), Gaps = 2/285 (0%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A ++F  + + G  PD ++Y+SMI    +AG +  A  L+ +   E+      A++T+I 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            YG+AG F+    + E ++  G  P+++++N++L  +G+ ++  +  ++++ M  +   P
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA-EP 120

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N +TY  ++         E+   +  EM+   +  ++   N ++         +EA++IF
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF 180

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           E   S   C PD  T+ S+I     +G+V EA  +F +ML+AG   N  V TSLI+ +  
Sbjct: 181 ES-ASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFI 239

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 503
             R +D  +    L   G  PD       ++ + +  + E G+++
Sbjct: 240 HGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMI 284



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 153/331 (46%), Gaps = 6/331 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +  +      + A +L + + +RG  P  V+F+++++C       ++A+  FE M 
Sbjct: 56  YNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK 115

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST--LIKLYGTAGN 285
               +P++ TY+ +ID     G VE A+ + D    E   + PN  +   ++     A  
Sbjct: 116 K-DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEM--EHASLFPNLLTVNIMVDRLCKARK 172

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    ++E     G  P+ +TY +L+D +G+  +  +   ++++M D G + N   Y S
Sbjct: 173 LEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTS 232

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+R +      ED   +++E+  +G +  +TL NT +      G  ++   IFED++S  
Sbjct: 233 LIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSY- 291

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              PD  ++S +I   +  G+  E   +F+ M + GF  +     +++  + K+ +    
Sbjct: 292 GFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKA 351

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
              L  + E  + P     G +++ + +  +
Sbjct: 352 YEILEEMKEKCVQPTVATYGAIVDGLAKIDR 382



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 128/263 (48%), Gaps = 1/263 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +    K     +   +F  M  +G   D   ++ ++     +   +KA E  E M 
Sbjct: 300 YSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK 359

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                P   TY +++D   +   ++ A+ L++ A+++   ++   +S+LI  +G  G  D
Sbjct: 360 EKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRID 419

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + EEM   G+ PN+ T+N+LLD + +A+   +    ++ M +    PN  TY+ L+
Sbjct: 420 EAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILI 479

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               R +        +++M+++G+  +V  Y T+++  A VG   +A+ +FE  K++   
Sbjct: 480 NGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGI 539

Query: 408 QPDSWTFSSMITICSCRGKVSEA 430
            PD+ +F+++I   S   +  EA
Sbjct: 540 -PDAASFNALIEGMSNANRAMEA 561


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 180/376 (47%), Gaps = 7/376 (1%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVI-LYNVTMKVFRKCRDLDKAERLFDDMLDRGV 196
           IL+ +   +  ALA+  F     AS   + +YN  M V+ +     K + L D M  RG 
Sbjct: 194 ILSVLGKANQEALAVEIFARAEAASGNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGC 253

Query: 197 KPDNVTFSTLISCARMNN---LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           +PD V+F+TLI+ AR+ +   + N A+E    +   G  PD +TY+++I A  R  N+E 
Sbjct: 254 EPDLVSFNTLIN-ARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEE 312

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  +Y+     + + D   ++ +I +YG  G       +++++++ G  P+ +TYN+LL 
Sbjct: 313 AVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLY 372

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
              R     +VK I ++M   G   +  TY +++  YG+    +    +Y +MK  G   
Sbjct: 373 AFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSP 432

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
               Y  L+          EA E+  +M ++   +P   TFS++I   +  GK  EAE  
Sbjct: 433 DAVTYTVLIDSLGKANMIKEAAEVMSEMLNA-RVKPTLRTFSALICGYAKAGKRVEAEET 491

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           F+ ML +G +P+    + ++    +   +   ++    +      PD      +L V+ +
Sbjct: 492 FDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGK 551

Query: 494 TPKEE-LGKLVECVEK 508
             +EE + K+V+ +E+
Sbjct: 552 ENREEDVHKVVKDMEE 567



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 139/663 (20%), Positives = 262/663 (39%), Gaps = 82/663 (12%)

Query: 97   TRYNSLVKLAADLDSCSATEDDVFSVLRCLG---DDFLEQDCVIILNNMTNPDTAALALT 153
            T Y SL+ L  + +   A    +FS +R  G    D L +  V+    M  P+TA   + 
Sbjct: 677  TMYESLL-LCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLID 735

Query: 154  YFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
                K     +V ++   ++ + K +   KAE L   +  +    D   ++ LI     +
Sbjct: 736  QAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAAS 795

Query: 214  NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
                +A   F  M   G  P   + + ++ A    G ++  + +    ++  ++I  ++ 
Sbjct: 796  GCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSI 855

Query: 274  STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM-- 331
            + ++  +  AGN      +Y+ MKA G  P M  Y  ++  + + KR   V+ +  EM  
Sbjct: 856  TLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEV 915

Query: 332  ---------------------------------TDNGLSPNWNTYASLLRAYGRARYGED 358
                                              + GL P+ +TY +L+  Y R R  E+
Sbjct: 916  ARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEE 975

Query: 359  TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
             LS+  EM+  G++  +  Y +L++    +   ++A E+FE + S E C+ D   +  M+
Sbjct: 976  GLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKE-CKLDRSFYHIMM 1034

Query: 419  TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVR-------- 467
             +    G  S+AE +   M EAG EP +  +  L+  Y   G+ +  + V+         
Sbjct: 1035 KMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLP 1094

Query: 468  ---------------------ALNRLPEL---GITPDDRFCGCLLNV--MTQTPKEELGK 501
                                 A+ +L E+   G+ PD R   C +    ++Q   E +  
Sbjct: 1095 LSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAI-V 1153

Query: 502  LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLN 561
            L++ +  +   L   ++LL E+ D          E    +  +    + N L DL     
Sbjct: 1154 LLKALRDTGFDLP--IRLLTEKSDSLVSEVDNCLEKLGPLEDNAAFNFVNALEDLLWAFE 1211

Query: 562  LLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESG 620
            L   A  + +L +   +Y  D+   +   W    + +S G+AL  L +W++ +  A   G
Sbjct: 1212 LRATASWVFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALVGLTLWLDHMQDASLQG 1271

Query: 621  EEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLE 680
                P   +    G  +Y+   L S  ++ L E+ +PF     + G  +    + + WL+
Sbjct: 1272 YPLSP-KSVVLITGTAEYNMVSLNSTLKAFLWEMGSPFLPCKTRSGLLVAKAHSLRMWLK 1330

Query: 681  SRS 683
              S
Sbjct: 1331 DSS 1333



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 140/323 (43%), Gaps = 12/323 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + YN  +  F +  ++DK + + +DM+  G   D +T++T+I         + A + +
Sbjct: 363 DAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLY 422

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  PDA+TY+ +ID+ G+A  ++ A  +     N + +     FS LI  Y  A
Sbjct: 423 SDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKA 482

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G        ++ M   G+KP+ + Y+ +LD + R     +   +Y+EM  +   P+   Y
Sbjct: 483 GKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALY 542

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
             +LR  G+    ED   V ++M+E  GM   V     +   C D         I     
Sbjct: 543 EVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLAI----- 597

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            S+ C+ D     S++      G+  EA  + + + E     +  +  +LI    KA + 
Sbjct: 598 -SQGCELDRENLLSILGSYGSSGRHLEARELLDFLREHSSGSHQLINEALIIMLCKAHQL 656

Query: 463 DDVVRALNRLPELGITPDDRFCG 485
            D +R   +  + G+     FCG
Sbjct: 657 GDALREYGKARDFGL-----FCG 674



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 138/308 (44%), Gaps = 7/308 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERM 226
           YN  + V+ +C    +A RLF D+  +G  PD VT+++L+ + AR  N+ +K  E  E M
Sbjct: 332 YNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNV-DKVKEICEDM 390

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G   D +TY+++I  YG+ G  ++AF LY   +      D   ++ LI   G A   
Sbjct: 391 VKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMI 450

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                V  EM    VKP + T++ L+    +A +  + +  +  M  +G+ P+   Y+ +
Sbjct: 451 KEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVM 510

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L    R       + +Y+EM     +    LY  +L +       ++  ++ +DM+  E 
Sbjct: 511 LDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDME--EL 568

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
           C  +S    S++    C      A  M    +  G E +   L S++  YG + R  +  
Sbjct: 569 CGMNSQVICSILVKGEC---FDHAANMLRLAISQGCELDRENLLSILGSYGSSGRHLEAR 625

Query: 467 RALNRLPE 474
             L+ L E
Sbjct: 626 ELLDFLRE 633



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 93/413 (22%), Positives = 164/413 (39%), Gaps = 44/413 (10%)

Query: 99  YNSLVKLAA---DLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYF 155
           YNSL+   A   ++D      +D+  +    G D +  + +I +         A  L Y 
Sbjct: 367 YNSLLYAFAREGNVDKVKEICEDMVKM--GFGKDEMTYNTIIHMYGKRGQHDLAFQL-YS 423

Query: 156 TNKLKA-SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
             KL   S + + Y V +    K   + +A  +  +ML+  VKP   TFS LI       
Sbjct: 424 DMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAG 483

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
              +A E F+ M   G  PD L YS M+D   R      A  LY       ++ D   + 
Sbjct: 484 KRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYE 543

Query: 275 TLIKLYGTAGNFDGCLNVYEEMK-----------AIGVK-------PNMITY-------- 308
            ++++ G     +    V ++M+           +I VK        NM+          
Sbjct: 544 VMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLAISQGCEL 603

Query: 309 --NNLLDTMGR---AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
              NLL  +G    + R  + + +   + ++    +     +L+    +A    D L  Y
Sbjct: 604 DRENLLSILGSYGSSGRHLEARELLDFLREHSSGSHQLINEALIIMLCKAHQLGDALREY 663

Query: 364 REMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
            + ++ G+   S T+Y +LL  C +     EA +IF DM+     +P    + SM+    
Sbjct: 664 GKARDFGLFCGSFTMYESLLLCCEENELFAEASQIFSDMRFY-GVEPSDHLYRSMVVTYC 722

Query: 423 CRGKVSEAEAMFNEMLEAGFE-PNLFVLTSLIQCYGKA---QRTDDVVRALNR 471
             G    A  + ++  E G    ++ + T +I+ YGK    Q+ + +V +L +
Sbjct: 723 KMGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQ 775


>gi|255661146|gb|ACU25742.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 426

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 174/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 63  AISIFS-RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 122 TMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 179

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++   
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAY 299

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG   +
Sbjct: 300 ERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKD 354

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I  + K ++  +VV   N++  LG  PD      +LN
Sbjct: 355 ITVFERMIHLFSKYKKYGNVVEVFNKMRGLGYFPDSNVIALVLN 398



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+++ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G + +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 137/288 (47%), Gaps = 1/288 (0%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +  
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                 K+  +  +I+ EM +     +  T   ++  YG+    ++   ++  M++ G++
Sbjct: 122 TMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G D D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 NKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 93/222 (41%), Gaps = 36/222 (16%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G                  
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAG------------------ 109

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
                               P++ ++S+++T+     K  EA ++F EM E     +L  
Sbjct: 110 ------------------VTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTT 151

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
              +I  YG+     +  +    + ++GI P+      LL V
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRV 193



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 43.1 bits (100), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 1/130 (0%)

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           +E+ +      Y+TL+      G  D A    + M+  +    D   +S++I +      
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ-DRVPGDLVLYSNLIELSRKLCD 59

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            S+A ++F+ +  +GF P+L    ++I  +GKA+   +    ++ +   G+TP+      
Sbjct: 60  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYST 119

Query: 487 LLNVMTQTPK 496
           LL +  +  K
Sbjct: 120 LLTMYVENKK 129


>gi|414888270|tpg|DAA64284.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 890

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 147/636 (23%), Positives = 265/636 (41%), Gaps = 96/636 (15%)

Query: 108 DLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKL---KASKE 164
           DL + S T     S++     + L ++   +L+ M     A  A TY T      +A+  
Sbjct: 188 DLPAESRTALSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDP 247

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
            + +++ + +F + R  D +           V+PD  T++TL++ A + +L +++     
Sbjct: 248 PVPFDMLLGLFAEMRH-DASP---------SVRPDLTTYNTLLAAAAVRSLADQSEMLLH 297

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  PD ++Y  ++DA+  AGN+  A  L+          D +A+  L++ +   G
Sbjct: 298 TMLEAGVSPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVG 357

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                + V  +M+A G  P   TY  LLD  GR  R   V+ +++EM    + P+  TY 
Sbjct: 358 ATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMR-TAVPPDTATYN 416

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L R +G   + ++ + ++ +M + G+Q  +     ++A C   G   +A E+ E M + 
Sbjct: 417 VLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYM-TR 475

Query: 405 ENCQP--DSWT------------------FSSMITICS--------------CRGKV-SE 429
           E   P  D++T                  F+ M  I S               RG +  E
Sbjct: 476 EGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQE 535

Query: 430 AEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           AEA+F+ M   AG + +     +LI+ Y +  R DD V+A   + +    PD+R    +L
Sbjct: 536 AEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVL 595

Query: 489 NV-----MTQTPKEELGKLVECV---------------------------------EKSN 510
           N      +    KE+  +L   V                                  +++
Sbjct: 596 NAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTNRAS 655

Query: 511 SKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACK 568
           S    +  L+  E D   +++     L NS  +  D    + N L+ +         A +
Sbjct: 656 STHQVIASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQKGRAAR 715

Query: 569 LLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLG 628
           +L+  +   ++ ++   +   WSL +  +S+G AL A+ +W+N L   L   E+ P L  
Sbjct: 716 VLDQAVKFGLFPELYRDTKLVWSLDVHRMSMGGALVAVSVWLNKLYDRLVEDEDLPQLAS 775

Query: 629 INTGHGKHKYS--DKGL--ASVFESHLKE-LNAPFH 659
           +    G+ + S   +GL  A V  S L + L+A FH
Sbjct: 776 VVVLRGEMEKSTVTRGLPIAKVVYSFLNDTLSASFH 811


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 152/313 (48%), Gaps = 1/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  M    K RD +    L  +M D G++P+  TF+  I         ++A E F RM 
Sbjct: 230 YSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMD 289

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC PD +TY+ +IDA   AG +E A  L+ + +    + D   + TL+  +   G+ D
Sbjct: 290 DEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLD 349

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
                + +M+A G  P+++T+  L+D + +A+   +    +  M   G+ PN +TY +L+
Sbjct: 350 TFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLI 409

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               RA   ED L +   M+  G+Q +   Y T +      G T +A E FE MK ++  
Sbjct: 410 CGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMK-AKGI 468

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+    ++ +   +  G++ EA+ MFN + E G  P+      +++CY K  + D+ V 
Sbjct: 469 VPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVN 528

Query: 468 ALNRLPELGITPD 480
            L+ +   G  PD
Sbjct: 529 LLSEMIRNGCEPD 541



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 155/315 (49%), Gaps = 1/315 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  + + ++V  +   +D+A  +F  M D G  PD VT++ LI           A E F 
Sbjct: 262 VYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFV 321

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M + G  PD + Y +++D +   G+++     + +   + +  D   F+ L+ +   A 
Sbjct: 322 KMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKAR 381

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           +FD     ++ M+  G+ PN+ TYN L+  + RA R      +   M   G+ P   TY 
Sbjct: 382 DFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYI 441

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           + +  +G++      +  + +MK KG+  ++   N  L   A++G   EA  +F  ++ +
Sbjct: 442 TFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLREN 501

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               PDS T++ M+   S  G+V EA  + +EM+  G EP++ V+ SLI    KA R D+
Sbjct: 502 -GLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDE 560

Query: 465 VVRALNRLPELGITP 479
             +  +R+ ++ ++P
Sbjct: 561 AWQMFDRMKDMKLSP 575



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 151/326 (46%), Gaps = 1/326 (0%)

Query: 155  FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
            FT KL  S  +  YN  +    +    +KA  LF DM + G  PD  TF+ L++    + 
Sbjct: 778  FTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSG 837

Query: 215  LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
               +  E ++ M S  C PDA+TY+ +I +  ++ N++ A   +    +  +R  P  + 
Sbjct: 838  KITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYG 897

Query: 275  TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
             LI      G  +  + ++EEM   G KPN   +N L++  G+         ++K M + 
Sbjct: 898  PLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNE 957

Query: 335  GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
            G+ P+  +Y  L+     A   ++ L  + E+K  G+      YN ++         +EA
Sbjct: 958  GIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEA 1017

Query: 395  FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
              ++ +M+ +    PD +T++S++      G V +A+ M+ E+  AG EP++F   +LI+
Sbjct: 1018 LALYNEMR-NRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIR 1076

Query: 455  CYGKAQRTDDVVRALNRLPELGITPD 480
             Y  ++  +        +   G  P+
Sbjct: 1077 GYSLSENPEHAYTVYKNMMVDGCNPN 1102



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 135/259 (52%), Gaps = 3/259 (1%)

Query: 160  KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNK 218
            +   + I YN+ +    K  +LDKA   F D++    +P   T+  LI   A++  L  +
Sbjct: 853  RCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRL-EE 911

Query: 219  AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
            A+  FE M  +GC P+   ++ +I+ YG+ G+ E A  L+ R  NE  R D  +++ L+ 
Sbjct: 912  AMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVD 971

Query: 279  LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
                AG  D  L  + E+K+ G+ P+ I YN +++ +G+++R  +   +Y EM + G+ P
Sbjct: 972  CLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVP 1031

Query: 339  NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
            +  TY SL+   G A   E    +Y E++  G++  V  YN L+   +     + A+ ++
Sbjct: 1032 DLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVY 1091

Query: 399  EDMKSSENCQPDSWTFSSM 417
            ++M   + C P+  T++ +
Sbjct: 1092 KNM-MVDGCNPNIGTYAQL 1109



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 147/280 (52%), Gaps = 3/280 (1%)

Query: 168  YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERM 226
            +N+ + V  K   + +   L+ +M+ R  KPD +T++ +IS  A+ NNL +KA+++F  +
Sbjct: 826  FNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNL-DKALDFFYDL 884

Query: 227  PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
             S    P   TY  +ID   + G +E A  L++   +   + +   F+ LI  YG  G+ 
Sbjct: 885  VSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDT 944

Query: 287  DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
            +    +++ M   G++P++ +Y  L+D +  A R  +    + E+   GL P++  Y  +
Sbjct: 945  ETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRI 1004

Query: 347  LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
            +   G+++  E+ L++Y EM+ +G+   +  YN+L+      G  ++A  ++E+++ +  
Sbjct: 1005 INGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLA-G 1063

Query: 407  CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             +PD +T++++I   S       A  ++  M+  G  PN+
Sbjct: 1064 LEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNI 1103



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 177/387 (45%), Gaps = 15/387 (3%)

Query: 132 EQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILY-----NVTMKVFRKCRDLDKAER 186
           E + + +L +MT+P     AL+YF +   +    +L+     N  ++  R    ++    
Sbjct: 89  EDEVLGVLKSMTDP---IRALSYFYSI--SEFPTVLHTTETCNFMLEFLRVHDKVEDMAA 143

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           +F+ M  + ++ D  T+ T+     +     +      +M   G   +A +Y+ +I    
Sbjct: 144 VFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLI 203

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           ++G    A  +Y R  +E  +     +S L+   G   + +  + + +EM+ +G++PN+ 
Sbjct: 204 QSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVY 263

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           T+   +  +GRA +  +   I++ M D G  P+  TY  L+ A   A   E+   ++ +M
Sbjct: 264 TFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKM 323

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRG 425
           K  G +    +Y TLL    D G  D   E +  M+ ++   PD  TF+ ++  +C  R 
Sbjct: 324 KANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQME-ADGYMPDVVTFTILVDVLCKAR- 381

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 485
              EA A F+ M + G  PNL    +LI    +A R +D ++ L+ +  +G+ P      
Sbjct: 382 DFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYI 441

Query: 486 CLLNVMTQTPKEELGKLVECVEKSNSK 512
             ++   ++   E GK VE  EK  +K
Sbjct: 442 TFIDYFGKSG--ETGKAVETFEKMKAK 466



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 138/302 (45%), Gaps = 8/302 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +    +   ++ A +L D M   GV+P   T+ T I     +    KAVE FE+M 
Sbjct: 405 YNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMK 464

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  P+ +  ++ + +    G +  A  +++  R      D   ++ ++K Y   G  D
Sbjct: 465 AKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVD 524

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +N+  EM   G +P++I  N+L+D++   GR    WQ   ++  M D  LSP   TY 
Sbjct: 525 EAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQ---MFDRMKDMKLSPTVVTYN 581

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +LL   G+    +  + ++  M  K    +   +NTLL         + A ++F  M + 
Sbjct: 582 TLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKM-TV 640

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            +C+PD  T++++I       KV+ A   F++ L+    P+   + +L+    K  +  D
Sbjct: 641 MDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQ-LKKSMHPDHVTICTLLPGLVKCGQIGD 699

Query: 465 VV 466
            +
Sbjct: 700 AI 701



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 158/349 (45%), Gaps = 5/349 (1%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           +K S  V+ YN  +    K   + KA  LF+ M+ +   P+ ++F+TL+ C   N+    
Sbjct: 571 MKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVEL 630

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A++ F +M    C PD LTY+++I    +   V  AF  + + + +    D     TL+ 
Sbjct: 631 ALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLK-KSMHPDHVTICTLLP 689

Query: 279 LYGTAGNFDGCLNVYEE-MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
                G     +++  + M  +  + N   + +L+          +     +E+  NG+ 
Sbjct: 690 GLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGIC 749

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLAMCADVGYTDEAFE 396
              +    L+R   + +       ++ +  +K G+  ++  YN L+    +V YT++A++
Sbjct: 750 REDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWD 809

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           +F+DMK+   C PD++TF+ ++ +    GK++E   ++ EM+    +P+      +I   
Sbjct: 810 LFKDMKNV-GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSL 868

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 504
            K+   D  +     L      P  R  G L++ + +  + EE  +L E
Sbjct: 869 AKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFE 917



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 136/319 (42%), Gaps = 2/319 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           L +A+ +F+ + + G+ PD+VT++ ++ C       ++AV     M   GC+PD +  +S
Sbjct: 488 LREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNS 547

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +ID+  +AG V+ A+ ++DR ++ K       ++TL+   G  G     + ++E M    
Sbjct: 548 LIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKK 607

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
             PN I++N LLD   +         ++ +MT     P+  TY +++    +        
Sbjct: 608 CSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAF 667

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
             + ++K K M        TLL      G   +A  I  D       + +   +  ++  
Sbjct: 668 WFFHQLK-KSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGG 726

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL-PELGITP 479
                ++ +A     E++  G       L  L++   K +R     +  ++   +LGI+P
Sbjct: 727 TLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISP 786

Query: 480 DDRFCGCLLNVMTQTPKEE 498
                 CL+  + +    E
Sbjct: 787 TLASYNCLIGELLEVHYTE 805


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 156/318 (49%), Gaps = 6/318 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEW 222
           V+ YN  +        L  A R FD ML  GV P+  T++ L+   C R +    +A+  
Sbjct: 123 VLAYNAVLLALSDA-SLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHR--KEALSV 179

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
              M   GCDP+A+TY++++ A+ RAG V+ A  L D  R    + +   F++++     
Sbjct: 180 LRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICK 239

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           AG  +    V++EM   G+ P+ ++YN L+    +     +  +++ EMT  G+ P+  T
Sbjct: 240 AGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVT 299

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           + SL+    +A   E  + + REM+E+G+Q++   +  L+      G+ D+A     +M+
Sbjct: 300 FTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMR 359

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
                QP    ++++I      G++ EA  +  EM   G +P++   ++++  Y K   T
Sbjct: 360 QCR-IQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDT 418

Query: 463 DDVVRALNRLPELGITPD 480
               +   ++ E G+ PD
Sbjct: 419 HSAFQLNQQMLENGVLPD 436



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 162/331 (48%), Gaps = 1/331 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  +  F +  ++D+AERL D M + G+KP+ VTF+++++          A + F+ 
Sbjct: 193 VTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDE 252

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  PD ++Y++++  Y + G    A  ++     +    D   F++LI +   AGN
Sbjct: 253 MVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGN 312

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  + +  EM+  G++ N IT+  L+D   +           +EM    + P+   Y +
Sbjct: 313 LERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNA 372

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  Y      ++   + REM+ KG++  V  Y+T+L+     G T  AF++ + M  + 
Sbjct: 373 LINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLEN- 431

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              PD+ T+SS+I +     ++ +A  +F  M+  G +P+    TSLI  + K    +  
Sbjct: 432 GVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERA 491

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           +   + + + G+ PD      L+N ++++ +
Sbjct: 492 LSLHDEMVKAGVLPDVVTYSVLINGLSKSAR 522



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 168/403 (41%), Gaps = 90/403 (22%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ +N  +    K   ++ A ++FD+M+  G+ PD V+++TL+         ++A+  F 
Sbjct: 227 LVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFA 286

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR------NE-------------- 264
            M   G  PD +T++S+I    +AGN+E A GL    R      NE              
Sbjct: 287 EMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKG 346

Query: 265 -------------KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM---- 305
                        + RI P+   ++ LI  Y   G  D    +  EM+A GVKP++    
Sbjct: 347 FLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYS 406

Query: 306 -------------------------------ITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
                                          ITY++L+  +   KR      ++K M   
Sbjct: 407 TILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISL 466

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           GL P+  TY SL+  + +    E  LS++ EM + G+   V  Y+ L+   +    T EA
Sbjct: 467 GLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEA 526

Query: 395 ----FEIFEDMKSSENCQPDSW----------TFSSMITICSCRGKVSEAEAMFNEMLEA 440
               F+++ +     N + D+           +  +++     +G ++EA+ ++  +L+ 
Sbjct: 527 QRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDR 586

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALN---RLPELGITPD 480
            +  +  V + LI  +    R  +V++AL+   ++ + G  P+
Sbjct: 587 NWNLDGSVYSVLIHGHC---REGNVMKALSFHKQMLQCGFAPN 626



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 154/352 (43%), Gaps = 17/352 (4%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A LA+     + +    V+ YN  +  +     +D+A  L  +M  +GVKPD VT+ST
Sbjct: 349 DDALLAVREM-RQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYST 407

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           ++S    N   + A +  ++M   G  PDA+TYSS+I        +  A  L+    +  
Sbjct: 408 ILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLG 467

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
            + D   +++LI  +   GN +  L++++EM   GV P+++TY+ L++ + ++ R  + +
Sbjct: 468 LQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQ 527

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGE---------------DTLSVYREMKEKG 370
            +  ++      P    Y +L+R    A                   +   VY+ + ++ 
Sbjct: 528 RLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRN 587

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
             L  ++Y+ L+      G   +A    + M       P+S +  S+I     +G V EA
Sbjct: 588 WNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQC-GFAPNSTSTISLIRGLFEKGMVVEA 646

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           + +  ++L      +     +LI    K    D V+  L+ +   G+ P  R
Sbjct: 647 DQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAVLDVLHGMARDGLLPSPR 698


>gi|356540087|ref|XP_003538522.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 173/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LKAS    ++I YN  + VF K +   +A  L  +M D  V+PD V++STL+
Sbjct: 233 AISIFS-RLKASTITPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLL 291

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+    + A  L+   R  K  
Sbjct: 292 AIYVDNQKFVEALSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMR--KMG 349

Query: 268 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I PN  S  TL+++YG A  F   ++++  M++  V+ N++TYN +++  G+     +  
Sbjct: 350 IQPNVISYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKAT 409

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM   G+ PN  TY++++  + +A   +    ++++++  G+++   LY T++   
Sbjct: 410 NLIQEMNKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAY 469

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+    + I I +  G++ EA  +F +  +A    +
Sbjct: 470 ERTGLVAHAKRLLHELK-----RPDNIPRDTAIAILARAGRIEEATWVFRQAFDAREVKD 524

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I  + K ++  +VV    ++ E+G  PD      +LN
Sbjct: 525 ISVFGCMINLFSKNKKYANVVEVFEKMREVGYFPDSDVIALVLN 568



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 187/409 (45%), Gaps = 49/409 (11%)

Query: 113 SATEDDVFSVL-----RCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVIL 167
           +  ED++++V+     R L   F+    V +L+   +   A   L +  +K      +  
Sbjct: 91  TQNEDELYAVMSPYNGRQLSMRFM----VSLLSREPDWQRALALLDWINDKALYRPSLFA 146

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC------------------ 209
           YNV ++   + +    A  LFD+M  +G+ PD  T+STLI+C                  
Sbjct: 147 YNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITCFGKHGLFDSSLFWLQQME 206

Query: 210 -----------------ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
                            AR  +  +KA+  F R+ +    PD + Y+SMI+ +G+A    
Sbjct: 207 QDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTITPDLIAYNSMINVFGKAKLFR 266

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  L    R+   + D  ++STL+ +Y     F   L+++ EM       ++ T N ++
Sbjct: 267 EARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLDLTTCNIMI 326

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           D  G+   P +   ++  M   G+ PN  +Y +LLR YG A    + + ++R M+ K +Q
Sbjct: 327 DVYGQLHMPKEADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRLMQSKDVQ 386

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNT++ +       ++A  + ++M +    +P++ T+S++I+I    GK+  A  
Sbjct: 387 QNVVTYNTMINIYGKTLEHEKATNLIQEM-NKRGIEPNAITYSTIISIWEKAGKLDRAAI 445

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +F ++  +G   +  +  ++I  Y   +RT  V  A   L EL   PD+
Sbjct: 446 LFQKLRSSGVRIDEVLYQTMIVAY---ERTGLVAHAKRLLHELK-RPDN 490



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 132/280 (47%), Gaps = 3/280 (1%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           P    Y+ ++    RA    +A GL+D  R +    D   +STLI  +G  G FD  L  
Sbjct: 142 PSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITCFGKHGLFDSSLFW 201

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
            ++M+   V  +++ Y+NL+D   +     +  +I+  +  + ++P+   Y S++  +G+
Sbjct: 202 LQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTITPDLIAYNSMINVFGK 261

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
           A+   +   + +EM++  +Q     Y+TLLA+  D     EA  +F +M  ++ C  D  
Sbjct: 262 AKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAK-CPLDLT 320

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T + MI +        EA+ +F  M + G +PN+    +L++ YG+A    + +     +
Sbjct: 321 TCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRLM 380

Query: 473 PELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSK 512
               +  +      ++N+  +T + E  K    +++ N +
Sbjct: 381 QSKDVQQNVVTYNTMINIYGKTLEHE--KATNLIQEMNKR 418



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 100/234 (42%), Gaps = 31/234 (13%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L          + V+ YN  + ++ K  + +KA  L  +M  RG++P+ +T+ST+IS
Sbjct: 373 AIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMNKRGIEPNAITYSTIIS 432

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY----------------------- 245
                   ++A   F+++ S G   D + Y +MI AY                       
Sbjct: 433 IWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERTGLVAHAKRLLHELKRPDNIP 492

Query: 246 --------GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
                    RAG +E A  ++ +A + +   D + F  +I L+     +   + V+E+M+
Sbjct: 493 RDTAIAILARAGRIEEATWVFRQAFDAREVKDISVFGCMINLFSKNKKYANVVEVFEKMR 552

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
            +G  P+      +L+  G+ +   +   +Y++M + G       +  +L  YG
Sbjct: 553 EVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQMLSLYG 606



 Score = 38.9 bits (89), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 28/137 (20%), Positives = 58/137 (42%), Gaps = 3/137 (2%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           +  + +  +   +++A  +F    D     D   F  +I+    N      VE FE+M  
Sbjct: 494 DTAIAILARAGRIEEATWVFRQAFDAREVKDISVFGCMINLFSKNKKYANVVEVFEKMRE 553

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  PD+   + +++A+G+    + A  LY +   E           ++ LYG   +F  
Sbjct: 554 VGYFPDSDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQMLSLYGARKDFVM 613

Query: 289 CLNVYEEMKAIGVKPNM 305
             +++E++ +    PN+
Sbjct: 614 VESLFEKLDS---NPNI 627


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 163/361 (45%), Gaps = 34/361 (9%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
           F      S +V  Y+  ++ + K RDL+ A+++ ++M + G   + VT++TLI       
Sbjct: 233 FMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAG 292

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
              +A  + + M  +G  PD  TY ++I+   + G  + A  L D         +   +S
Sbjct: 293 AIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYS 352

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
           TLI  +   GN D    + +EM A GV+PN ITY+NL+  + +  R  +   I K+MT  
Sbjct: 353 TLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKI 412

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G   +  TY  ++  + R    E+   +  EM++ G+  +V  Y+ ++     +G ++ A
Sbjct: 413 GYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERA 472

Query: 395 FEIFEDM----------------------------------KSSENCQPDSWTFSSMITI 420
             + E M                                   + EN  PD + ++S+I  
Sbjct: 473 SGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIG 532

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            S  GK+ EA   ++EMLE GF+PN F    LI  Y  A   +   + L+++   G+ P+
Sbjct: 533 LSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPN 592

Query: 481 D 481
           D
Sbjct: 593 D 593



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 156/313 (49%), Gaps = 1/313 (0%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D+A+ L D+M   G+ P+ V +STLI         ++A +  + M + G  P+ +TY ++
Sbjct: 330 DQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNL 389

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I    + G +  A  +  +     +  D   ++ +I+ +    N +    +  EM+  G+
Sbjct: 390 IRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGI 449

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            PN+ TY+ +++ + +     +   + ++M  +GL PN   YA L+  Y R         
Sbjct: 450 SPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACE 509

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
             ++M  + +   +  YN+L+   ++VG  DEA E +++M   +  QP+ +T+  +I   
Sbjct: 510 TLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEML-EKGFQPNDFTYGGLIHGY 568

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           S  G + +AE + ++ML +G  PN F+   +++ Y K+   + V   L  + E G+ PD+
Sbjct: 569 SMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDN 628

Query: 482 RFCGCLLNVMTQT 494
           R  G +++ ++ +
Sbjct: 629 RLYGIVIHNLSSS 641



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 142/313 (45%), Gaps = 4/313 (1%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K+    + + YN+ ++   +  + ++A  L ++M   G+ P+  T+S +I+         
Sbjct: 411 KIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESE 470

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +A    E+M + G  P+A  Y+ +I  Y R G+  +A     +   E    D   +++LI
Sbjct: 471 RASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLI 530

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
                 G  D  +  Y+EM   G +PN  TY  L+     A    + + +  +M ++GL+
Sbjct: 531 IGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLN 590

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           PN   YA +L  Y ++   E   S  + M EKG+     LY  ++   +  G+   A  +
Sbjct: 591 PNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSV 650

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
              ++ +    PDS  + S+I+       + +A  + +EM + G EP +    +LI  + 
Sbjct: 651 LSVIEKN-GLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFC 709

Query: 458 KAQRTDDVVRALN 470
           K   +DD+  A N
Sbjct: 710 K---SDDISHARN 719



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 134/294 (45%), Gaps = 2/294 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +  +    +L+KAE+L   ML+ G+ P++  ++ ++     ++   K     + M 
Sbjct: 561 YGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSML 620

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD   Y  +I     +G+++ A  +           D   + +LI  +  A + +
Sbjct: 621 EKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADME 680

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + + +EM   G++P +  YN L+D   ++      + I+  +   GL PN  TY +L+
Sbjct: 681 KAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLI 740

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             Y +A    D + +Y EM  +G+     +Y+ L A C++ G   +A  I E+M +    
Sbjct: 741 DGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYA 800

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
              S  F++++     RGK+ E     + M++    P+L  + +++   G+A +
Sbjct: 801 IISS--FNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGK 852



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 140/333 (42%), Gaps = 21/333 (6%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I Y+  ++   K   + +A R+   M   G   D +T++ +I      +   +A      
Sbjct: 384 ITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNE 443

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTA 283
           M   G  P+  TYS +I+   + G  E A GL ++   +  +  PNAF  + LI  Y   
Sbjct: 444 MRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLK--PNAFVYAPLISGYCRE 501

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+F       ++M    + P++  YN+L+  +    +  +    Y EM + G  PN  TY
Sbjct: 502 GSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTY 561

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY--TDEAFEIFEDM 401
             L+  Y  A   E    +  +M   G+  +  +Y  +L      GY  +D   ++   +
Sbjct: 562 GGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILE-----GYFKSDNLEKVSSTL 616

Query: 402 KS--SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           KS   +   PD+  +  +I   S  G +  A ++ + + + G  P+  +  SLI  + KA
Sbjct: 617 KSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKA 676

Query: 460 QRTDDVVRALNRLPELGITPD--------DRFC 484
              +  V  L+ + + GI P         D FC
Sbjct: 677 ADMEKAVGLLDEMAKKGIEPGISCYNALIDGFC 709


>gi|255661150|gb|ACU25744.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
 gi|255661152|gb|ACU25745.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 426

 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV PD  ++STL++    N    +A+  F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLLTMYVENKKFLEALSIF 137

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 195

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM + G+ PN  
Sbjct: 196 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSI 255

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+ +   LY T++      G    A  +  ++
Sbjct: 256 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL 315

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+      I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++
Sbjct: 316 K-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKK 370

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 371 YGNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    +      D  ++STL+ +Y     F 
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+++ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G + +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 137/288 (47%), Gaps = 1/288 (0%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +  
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV P+  +Y+ LL
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLL 121

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                 K+  +  +I+ EM +     +  T   ++  YG+    ++   ++  M++ G++
Sbjct: 122 TMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G D D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420


>gi|298707411|emb|CBJ30040.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 564

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 150/328 (45%), Gaps = 13/328 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNN-------L 215
           +V  Y+V M    +    ++   L D M   GV PD+  F   + +CA+          L
Sbjct: 68  DVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHFAFGAAVNACAKGGQWERAVALL 127

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AF 273
             +A+     M + G  P+  T+SS + A G AG  E A GL D+   E   + PN   F
Sbjct: 128 DQRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEG--VPPNEFTF 185

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           S  +   G AG +   L +   M+A    PN+ TY   +D  G+A      + +  EM +
Sbjct: 186 SAAVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMRE 245

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
            G++PN  T+ S + A G     ++ L++ R+M   G+Q ++  Y   +  C D      
Sbjct: 246 KGVAPNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWAR 305

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A  + E M+ S   + D  +F++ I  C+  G    A A+ +EM + G  P +   ++ I
Sbjct: 306 ALAVHEQMR-SRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAI 364

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDD 481
              GK Q+    V  L  + E+G++P++
Sbjct: 365 SACGKGQQWGRAVALLREMEEVGVSPNE 392



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 150/332 (45%), Gaps = 8/332 (2%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D  AL L      +  S  V  ++  +         ++A  L D M + GV P+  TFS 
Sbjct: 128 DQRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSA 187

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
            +S          A+    RM +  C P+  TY++ IDA G+AG   +A GL    R + 
Sbjct: 188 AVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKG 247

Query: 266 WRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
             + PN   F++ I   G  G +   LN+  +M ++GV+PNM +Y   +   G   R  +
Sbjct: 248 --VAPNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWAR 305

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
              ++++M   G+  +  ++ + + A  +    E  L++  EM+++G+  +V  ++T ++
Sbjct: 306 ALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAIS 365

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
            C        A  +  +M+      P+  +F++ I  C   G+   A ++ ++M  AG  
Sbjct: 366 ACGKGQQWGRAVALLREMEEV-GVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSSAGVP 424

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
                  ++I   GK +   +  RA++ L E+
Sbjct: 425 RGTITYNAVIAACGKGK---EWARAVSVLREM 453



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 124/275 (45%), Gaps = 9/275 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  Y   +    K  +   A+ L  +M ++GV P+ +TF++ IS         +A+    
Sbjct: 217 VQTYTAAIDACGKAGEWRLAQGLLAEMREKGVAPNVITFNSAISALGNGGQWQEALNLLR 276

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            MPS G  P+  +Y++ + A G       A  ++++ R+   R D  +F+  I      G
Sbjct: 277 DMPSMGVQPNMWSYTAAVTACGDNNRWARALAVHEQMRSRGIRGDEVSFTAAIDACAQGG 336

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            ++  L + +EM+  G+ P + +++  +   G+ ++  +   + +EM + G+SPN  ++ 
Sbjct: 337 AWEMALALLDEMRDEGIPPTVRSFSTAISACGKGQQWGRAVALLREMEEVGVSPNEVSFN 396

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM--- 401
           + + A GRA      LS+  +M   G+      YN ++A C        A  +  +M   
Sbjct: 397 AAIDACGRAGQWRAALSLLDKMSSAGVPRGTITYNAVIAACGKGKEWARAVSVLREMLAG 456

Query: 402 --KSSENCQP----DSWTFSSMITICSCRGKVSEA 430
             K+  +  P    D  ++S+ I  C   G+  EA
Sbjct: 457 QAKTDGDMAPVPMADVVSYSAAIDACVRAGEWEEA 491



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 16/190 (8%)

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           L + GR  +  +  T      ++G+  +  TY+ L+ A  R+   E+ L +   M+ +G+
Sbjct: 41  LKSQGRKGQWKEALTAANLAREDGVVFDVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGV 100

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMK-------SSENCQPDSWTFSSMITICSCR 424
                 +   +  CA  G  + A  + +          ++    P+  TFSS +  C   
Sbjct: 101 APDHFAFGAAVNACAKGGQWERAVALLDQRALRLLGEMAAVGLSPNVTTFSSAVAACGNA 160

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
           G+   A  + ++M E G  PN F  ++ +   GKA +    +  L R+         R  
Sbjct: 161 GQWERALGLLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPALTILRRM---------RAA 211

Query: 485 GCLLNVMTQT 494
            C  NV T T
Sbjct: 212 NCPPNVQTYT 221


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 170/349 (48%), Gaps = 3/349 (0%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDML 192
           C I+LN +      A A       +        ++YN  +  + + RDL  A  +F+ M 
Sbjct: 159 CSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMK 218

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
            R ++PD++T++ LI+      +  KA +    M   G DP   T++++IDAYG AG +E
Sbjct: 219 SRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLE 278

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
             F +    + +  + D  +F +++K +   G     + + ++M    V PN   YN+++
Sbjct: 279 KCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSII 338

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           D    +    Q   + ++M ++G+S +  TY  LL+   R+   ++   +   ++ +G++
Sbjct: 339 DAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLR 398

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
             V  YNT+++ C + G TD+A E+ ++M +    +P   T+ ++++  +  G+V + E 
Sbjct: 399 PDVVSYNTIISACCNKGDTDKALELLQEM-NKYGIRPTLRTYHTLVSALASAGRVHDMEC 457

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           ++ +ML    EP+  +   ++  Y + +    V      + E GI  DD
Sbjct: 458 LYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFDD 506



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 167/357 (46%), Gaps = 7/357 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD--LDKAERLFDDMLDR 194
           I+ + +T    +   L+ F   LK    +  Y  ++ +   C+D  + KAE++ + ++  
Sbjct: 126 ILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHT 185

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G+ P  V ++TLI+          A   FE+M S    PD +TY+++I+   +   V  A
Sbjct: 186 GLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKA 245

Query: 255 FGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
             L      EK  +DP+   F+TLI  YGTAG  + C  V  +M+  G+K ++I++ +++
Sbjct: 246 EDLV--MEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVV 303

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
               +  +  +   I  +M    ++PN   Y S++ AY  +   E    +  +MK  G+ 
Sbjct: 304 KAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVS 363

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            S+  YN LL         DEA E+   +++ +  +PD  +++++I+ C  +G   +A  
Sbjct: 364 ASIVTYNLLLKGLCRSSQIDEAEELIYTLRN-QGLRPDVVSYNTIISACCNKGDTDKALE 422

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           +  EM + G  P L    +L+     A R  D+     ++    + P     G +++
Sbjct: 423 LLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVD 479



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 137/315 (43%), Gaps = 5/315 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I YN  +    K  DL+   RL D ML  G KP+ VT++ L+S        ++     + 
Sbjct: 52  ITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDE 111

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA-- 283
           M S    PD  TYS + D   R G       L+  A + K  +   A++  I L G    
Sbjct: 112 MASHSMFPDGFTYSILFDGLTRTGESRTMLSLF--AESLKKGVMLGAYTCSILLNGLCKD 169

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       V E +   G+ P  + YN L++   + +       I+++M    + P+  TY
Sbjct: 170 GKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITY 229

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+    +         +  EM++ G+  SV  +NTL+      G  ++ F +  DM+ 
Sbjct: 230 NALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQ- 288

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +  + D  +F S++      GK+ EA A+ ++M+     PN  V  S+I  Y ++  T+
Sbjct: 289 QKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTE 348

Query: 464 DVVRALNRLPELGIT 478
                + ++   G++
Sbjct: 349 QAFLLVEKMKNSGVS 363



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 138/286 (48%), Gaps = 7/286 (2%)

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           PD  +++ +I+    +   + A++ F+ M   G  P+ +TY++MID + + G++E  F L
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
            D+  ++  + +   ++ L+     AG  D    + +EM +  + P+  TY+ L D + R
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLS 374
                 + +++ E    G+     T + LL      G+    E  L +   +   G+  +
Sbjct: 134 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEM---LVHTGLVPT 190

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
             +YNTL+     V     AF IFE MK S + +PD  T++++I        V++AE + 
Sbjct: 191 TVIYNTLINGYCQVRDLRGAFCIFEQMK-SRHIRPDHITYNALINGLCKLEMVTKAEDLV 249

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            EM ++G +P++    +LI  YG A + +     L+ + + GI  D
Sbjct: 250 MEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSD 295


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 179/403 (44%), Gaps = 37/403 (9%)

Query: 114 ATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMK 173
           AT  ++F  L  L  D L     I+ + +      A     F   L     V+ YN  + 
Sbjct: 158 ATNRELFDEL-TLSRDRLSVKSSIVFDLLEGKLKKAREFIGFMEGLGFKPNVVSYNTIIH 216

Query: 174 VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDP 233
            +    +++ A R+ D M  +G++PD+ T+ +LIS         +A   F++M   G  P
Sbjct: 217 GYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVP 276

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNE----------------------------- 264
           +A+TY+++ID Y   G++E AF   D    +                             
Sbjct: 277 NAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMI 336

Query: 265 ----KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
               K  I P+A  ++ LI  Y   GN     +++ EM + G++P  +TY +L+  + R 
Sbjct: 337 KEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRR 396

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
            R  +   +++++ D G+SP+   + +++  +      E    + +EM  K +      +
Sbjct: 397 NRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTF 456

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           NTL+      G  +EA  + ++MK     +PD  +++++I+    RG + +A  + +EML
Sbjct: 457 NTLMQGRCREGKVEEARMLLDEMK-XRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEML 515

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
             GF P L    +LI+C  K Q  D     L  +   GI+PDD
Sbjct: 516 SIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDD 558



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 114/225 (50%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I YN+ +  + +C +  +A  L ++ML +G++P +VT+++LI      N   +A + F
Sbjct: 347 DAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLF 406

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E++   G  PD + +++MID +   GNVE AF L      +    D   F+TL++     
Sbjct: 407 EKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCRE 466

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +    + +EMK  G+KP+ I+YN L+   GR         +  EM   G +P   TY
Sbjct: 467 GKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTY 526

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            +L++   + + G+    + +EM  KG+    + Y +L+    +V
Sbjct: 527 NALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNV 571



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 117/251 (46%), Gaps = 1/251 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ +        + +A+ +  +M  +G+ PD +T++ LI+         +A +    M 
Sbjct: 316 YNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEML 375

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S G +P  +TY+S+I    R   ++ A  L+++  ++    D   F+ +I  +   GN +
Sbjct: 376 SKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVE 435

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + +EM    V P+ +T+N L+    R  +  + + +  EM   G+ P+  +Y +L+
Sbjct: 436 RAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLI 495

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YGR    +D   V  EM   G   ++  YN L+         D A E+ ++M  ++  
Sbjct: 496 SGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEM-VNKGI 554

Query: 408 QPDSWTFSSMI 418
            PD  T+ S+I
Sbjct: 555 SPDDSTYLSLI 565


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 162/322 (50%), Gaps = 4/322 (1%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D  AL  ++  + L  S +V  +NV +K   +  +  KA  L + M + G  PD +T + 
Sbjct: 197 DAVALFESWIQDGLY-SPDVWSFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNI 255

Query: 206 LISCARMNNLPNKAVEWFERMPSFG-CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
           L+         NK  E   R+   G C P+A+TY+S+I  Y +AG +E A  +Y+     
Sbjct: 256 LVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLES 315

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
             R +   ++ LI  YG A + +  + +Y ++      P+++T+++L+D   R  +    
Sbjct: 316 GTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDA 375

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLA 383
           K I+KEM  + + PN  T++ ++ +  +     + L + RE+  +  +     +YN ++ 
Sbjct: 376 KRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILRELNMRTDIAPQTFIYNPVID 435

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
           +    G  DEA  I  DMK  + C PD +T++ +I     +G++ EA  +F++M+EAG  
Sbjct: 436 ILCKGGKVDEANLIVTDMKE-KGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVEAGCR 494

Query: 444 PNLFVLTSLIQCYGKAQRTDDV 465
           P+   + S + C  KA   ++V
Sbjct: 495 PDNITVNSFVSCVLKAGMPNEV 516



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 164/349 (46%), Gaps = 10/349 (2%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV-KPDNVTFSTL 206
           AA  L    ++L    E   YN  +           A  LF+  +  G+  PD  +F+ +
Sbjct: 162 AASTLLTKGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVV 221

Query: 207 I-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           I    RM N   KA+E  ERM  FGC PD +T++ ++D   RA  V     +  R + + 
Sbjct: 222 IKGVCRMGNF-QKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDG 280

Query: 266 WRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
             + PNA  ++++I  Y  AG  +  ++VY +M   G +PN +TYN L++  G+A     
Sbjct: 281 VCM-PNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMES 339

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
              +Y+++      P+  T++SL+  Y R    +D   +++EM    +Q +V  ++ ++ 
Sbjct: 340 AVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIH 399

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
                  + EA +I  ++    +  P ++ ++ +I I    GKV EA  +  +M E G  
Sbjct: 400 SLCKQNRSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCH 459

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----DRFCGCLL 488
           P+ +  T LI  +    R  + +   +++ E G  PD    + F  C+L
Sbjct: 460 PDKYTYTILIIGHCMKGRIPEAITLFHKMVEAGCRPDNITVNSFVSCVL 508



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 103/234 (44%), Gaps = 1/234 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   +  + K   ++ A  +++DML+ G +P+ VT++ LI+          AV  + +
Sbjct: 287 VTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQ 346

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +    C PD +T+SS+ID Y R G ++ A  ++        + +   FS +I        
Sbjct: 347 LILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNR 406

Query: 286 FDGCLNVYEEMKA-IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
               L++  E+     + P    YN ++D + +  +  +   I  +M + G  P+  TY 
Sbjct: 407 SAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYT 466

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
            L+  +       + ++++ +M E G +      N+ ++     G  +E  +I 
Sbjct: 467 ILIIGHCMKGRIPEAITLFHKMVEAGCRPDNITVNSFVSCVLKAGMPNEVDQIM 520



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 3/116 (2%)

Query: 137 IILNNMTNPDTAALALTYFTN---KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           II++++   + +A AL        +   + +  +YN  + +  K   +D+A  +  DM +
Sbjct: 396 IIIHSLCKQNRSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKE 455

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
           +G  PD  T++ LI    M     +A+  F +M   GC PD +T +S +    +AG
Sbjct: 456 KGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVEAGCRPDNITVNSFVSCVLKAG 511


>gi|255661166|gb|ACU25752.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 426

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 175/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 63  AISIFS-RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 179

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++   
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAY 299

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
             VG    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG   +
Sbjct: 300 ERVGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKD 354

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 355 ITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSXVIALVLN 398



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 148/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G + +  +  ++I  Y +        R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERVGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 137/288 (47%), Gaps = 1/288 (0%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +  
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                 K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G D D + Y +MI AY R G V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERVGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+    A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMRGLGYFPDSXVIALVLNAYGKLHEFDKANDVYMEMQEVG 420


>gi|255661204|gb|ACU25771.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 426

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 186/381 (48%), Gaps = 16/381 (4%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDTA---ALALTYFTNKLKASK---EVILYNV 170
           DD  S L+ +  D +  D V+  N +         + A++ F+ +LK S    + + YN 
Sbjct: 26  DDALSWLQXMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFS-RLKRSGITPDXVAYNS 84

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
            + VF K +   +A  L  +M   GV PD V++STL++    N    +A+  F  M    
Sbjct: 85  MINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTLLTMYVENQKFLEALSVFAEMREIK 144

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDG 288
           C  D  T + MID YG+    + A  L+   R  K  I+PN  S  TL+++YG A  F  
Sbjct: 145 CSLDLTTCNIMIDVYGQLDMAKEADKLFWSMR--KIGIEPNVISYNTLLRVYGDAELFGE 202

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            ++++  M+   ++ N++TYN ++   G+     +   + +EM + G+ PN  TY++++ 
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNXGIEPNAITYSTIIS 262

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            +G+    +    ++++++  G+++   LY T++      G    A  +  ++K     +
Sbjct: 263 IWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELK-----R 317

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD+    +   I +  G++ EA  +F + ++AG   ++ V + +I  + K ++  +VV  
Sbjct: 318 PDNIPRDTAXHILAGAGRIEEATWVFRQAIDAGEVKDITVFSRMIDLFSKYKKYANVVEV 377

Query: 469 LNRLPELGITPDDRFCGCLLN 489
            +++  LG  PD      +LN
Sbjct: 378 FDKMRGLGYFPDSNVIALVLN 398



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 149/305 (48%), Gaps = 10/305 (3%)

Query: 185 ERLFDDML--------DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           E LFDD L        DR V  D V +S LI  +R     +KA+  F R+   G  PD +
Sbjct: 22  EGLFDDALSWLQXMEQDR-VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDXV 80

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            Y+SMI+ +G+A   + A  L    +      D  ++STL+ +Y     F   L+V+ EM
Sbjct: 81  AYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTLLTMYVENQKFLEALSVFAEM 140

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           + I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LLR YG A   
Sbjct: 141 REIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGIEPNVISYNTLLRVYGDAELF 200

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            + + ++R M+ K ++ +V  YNT++ +       ++A  + ++M +    +P++ T+S+
Sbjct: 201 GEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNX-GIEPNAITYST 259

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R L+ L    
Sbjct: 260 IISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPD 319

Query: 477 ITPDD 481
             P D
Sbjct: 320 NIPRD 324



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
           +  LSP   TY++L+  +G+    +D LS  + M++  +   + LY+ L+ +   +    
Sbjct: 2   ZRALSPERYTYSTLITHFGKEGLFDDALSWLQXMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           +A  IF  +K S    PD   ++SMI +        EA ++ +EM  AG  P+    ++L
Sbjct: 62  KAISIFSRLKRS-GITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTL 120

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           +  Y + Q+  + +     + E+  + D   C  +++V  Q
Sbjct: 121 LTMYVENQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQ 161



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 93/218 (42%), Gaps = 36/218 (16%)

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           +STLI  +G  G FD  L+  + M+   V  +++ Y+NL++   +     +  +I+  + 
Sbjct: 12  YSTLITHFGKEGLFDDALSWLQXMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
            +G++P+   Y S++  +G+A+  ++  S+  EMK  G                      
Sbjct: 72  RSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAG---------------------- 109

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
                           PD+ ++S+++T+     K  EA ++F EM E     +L     +
Sbjct: 110 --------------VXPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCSLDLTTCNIM 155

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
           I  YG+     +  +    + ++GI P+      LL V
Sbjct: 156 IDVYGQLDMAKEADKLFWSMRKIGIEPNVISYNTLLRV 193



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 61/166 (36%), Gaps = 31/166 (18%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-----------------S 208
           I Y+  + ++ K   LD+A  LF  +   GV+ D V + T+I                  
Sbjct: 255 ITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHE 314

Query: 209 CARMNNLPN--------------KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
             R +N+P               +A   F +    G   D   +S MID + +       
Sbjct: 315 LKRPDNIPRDTAXHILAGAGRIEEATWVFRQAIDAGEVKDITVFSRMIDLFSKYKKYANV 374

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
             ++D+ R   +  D N  + ++  YG    FD    VY  M+  G
Sbjct: 375 VEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKAHXVYMNMQDEG 420



 Score = 42.7 bits (99), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 78/181 (43%), Gaps = 8/181 (4%)

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           +Z+ +      Y+TL+      G  D+A    + M+  +    D   +S++I +      
Sbjct: 1   RZRALSPERYTYSTLITHFGKEGLFDDALSWLQXMEQ-DRVPGDLVLYSNLIELSRKLCD 59

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            S+A ++F+ +  +G  P+     S+I  +GKA+   +    ++ +   G+ PD      
Sbjct: 60  YSKAISIFSRLKRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYST 119

Query: 487 LLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG--DFKKEATELFNSIS 542
           LL +  +  K  E L    E  E   S       +++   D+ G  D  KEA +LF S+ 
Sbjct: 120 LLTMYVENQKFLEALSVFAEMREIKCSLDLTTCNIMI---DVYGQLDMAKEADKLFWSMR 176

Query: 543 K 543
           K
Sbjct: 177 K 177


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 165/331 (49%), Gaps = 37/331 (11%)

Query: 165 VILYNVTMKVF-RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++ YNV + V+ R  R   +   L D+M   GV+PD  T ST+I+    + L ++AV +F
Sbjct: 209 LVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFF 268

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF----------------------GLYDRA 261
           E + + G  P  +TY++++  +G+AGN   A                       G Y RA
Sbjct: 269 EDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARA 328

Query: 262 R--NEKWR---------IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
               E  R         + PNAF+  T++  YG  G  D  L ++++MK  G  PN+ TY
Sbjct: 329 GFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTY 388

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N +L  +G+  R   +  +  EM+ +G +PN  T+ ++L   G+    +    V   M+ 
Sbjct: 389 NLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRS 448

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G++LS   YNTL+A     G    AF+++ +M S+    P   T+++++ + S +G  S
Sbjct: 449 CGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSA-GFTPCITTYNALLNVLSRQGDWS 507

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
            A+++ ++M   GF+PN    + L+QCY K 
Sbjct: 508 TAQSIVSKMRTKGFKPNEQSYSLLLQCYAKG 538



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 151/331 (45%), Gaps = 2/331 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEW 222
           +V  Y   +    +    ++A  LF ++  +GV P  VT++ ++    RM     + V  
Sbjct: 173 DVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVAL 232

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            + M + G +PD  T S++I A  R G V+ A   ++  +          ++ L++++G 
Sbjct: 233 LDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGK 292

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           AGN+   L V  EM+  G +P+ +TYN L  T  RA    +       M   GL PN  T
Sbjct: 293 AGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFT 352

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +++ AYG     ++ L+++ +MK+ G   +V  YN +L M           E+  +M 
Sbjct: 353 YNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMS 412

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            S  C P+  T+++M+ +C  RG       +   M   G E +     +LI  YG+    
Sbjct: 413 RS-GCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSR 471

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
            +  +  N +   G TP       LLNV+++
Sbjct: 472 TNAFKMYNEMTSAGFTPCITTYNALLNVLSR 502



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 155/330 (46%), Gaps = 5/330 (1%)

Query: 155 FTNKLKASKE---VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
           F   LKA      V+ YN  ++VF K  +  +A R+  +M   G +PD VT++ L     
Sbjct: 267 FFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYA 326

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
                 +A    + M S G  P+A TY++++ AYG  G V+ A  L+D+ +   +  + N
Sbjct: 327 RAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVN 386

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
            ++ ++ + G    F   L +  EM   G  PN +T+N +L   G+      V  + + M
Sbjct: 387 TYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGM 446

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G+  + +TY +L+ AYGR     +   +Y EM   G    +T YN LL + +  G  
Sbjct: 447 RSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDW 506

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLT 450
             A  I   M+ ++  +P+  ++S ++   +  G V+   A+ NE+  +G   P+  +L 
Sbjct: 507 STAQSIVSKMR-TKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILR 565

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +L+    K +R D +  A   +   G  PD
Sbjct: 566 TLVIANFKCRRLDGMETAFQEVKARGYNPD 595



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 120/249 (48%), Gaps = 3/249 (1%)

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRAR-NEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           DA     ++ A GR G  +    L D        R+D  A++T++     AG ++  L +
Sbjct: 137 DASALEMVVRALGREGQHDAVCALLDETPLPPGSRLDVRAYTTVLHALSRAGRYERALEL 196

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           + E++  GV P ++TYN +LD  GR  R W ++  +  EM   G+ P+  T ++++ A  
Sbjct: 197 FAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVIAACC 256

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           R    ++ ++ + ++K +G    V  YN LL +    G   EA  +  +M+ +  CQPD+
Sbjct: 257 RDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQN-GCQPDA 315

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            T++ +    +  G   EA    + M   G  PN F   +++  YG   + D+ +   ++
Sbjct: 316 VTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQ 375

Query: 472 LPELGITPD 480
           + + G  P+
Sbjct: 376 MKKTGFVPN 384



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 143/315 (45%), Gaps = 1/315 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +N  + V  K    D   R+ + M   GV+    T++TLI+          A + +  
Sbjct: 421 VTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNE 480

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S G  P   TY+++++   R G+   A  +  + R + ++ +  ++S L++ Y   GN
Sbjct: 481 MTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGN 540

Query: 286 FDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             G   +  E+   G V P+ +    L+    + +R   ++T ++E+   G +P+   + 
Sbjct: 541 VAGIAAIENEVYGSGAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFN 600

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           S+L  Y +         V+  +K  G+   +  YN+L+ M A    + EA +I   +K S
Sbjct: 601 SMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKCS 660

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +  +PD  +++++I     +G V EA+ + +EM+  G  P      +L+  Y   +   +
Sbjct: 661 QTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFSE 720

Query: 465 VVRALNRLPELGITP 479
               +  + + G+ P
Sbjct: 721 AREVIGYMVQHGLKP 735



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 155/333 (46%), Gaps = 3/333 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALAL     K      V  YN+ + +  K         +  +M   G  P+ VT++T+++
Sbjct: 369 ALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLA 428

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 + +      E M S G +    TY+++I AYGR G+   AF +Y+   +  +  
Sbjct: 429 VCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTP 488

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
               ++ L+ +    G++    ++  +M+  G KPN  +Y+ LL    +      +  I 
Sbjct: 489 CITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIE 548

Query: 329 KEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            E+  +G + P+W    +L+ A  + R  +   + ++E+K +G    + ++N++L++ A 
Sbjct: 549 NEVYGSGAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAK 608

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM-LEAGFEPNL 446
            G   +A E+F+ +K S    PD  T++S++ + +   +  EAE + N++      +P++
Sbjct: 609 NGMYSKATEVFDSIKRS-GLSPDLITYNSLMDMYAKCSESWEAEKILNQLKCSQTMKPDV 667

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
               ++I  + K     +  R L+ +   G+ P
Sbjct: 668 VSYNTVINGFCKQGLVKEAQRVLSEMVADGMAP 700



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 127/278 (45%), Gaps = 9/278 (3%)

Query: 97  TRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFT 156
           T YN+L+ + +     S T   + S +R  G    EQ   ++L         A  +    
Sbjct: 491 TTYNALLNVLSRQGDWS-TAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVA-GIAAIE 548

Query: 157 NKLKASKEV-----ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
           N++  S  V     IL  + +  F KCR LD  E  F ++  RG  PD V F++++S   
Sbjct: 549 NEVYGSGAVFPSWVILRTLVIANF-KCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYA 607

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR-NEKWRIDP 270
            N + +KA E F+ +   G  PD +TY+S++D Y +      A  + ++ + ++  + D 
Sbjct: 608 KNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKCSQTMKPDV 667

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
            +++T+I  +   G       V  EM A G+ P  +TY+ L+      +   + + +   
Sbjct: 668 VSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFSEAREVIGY 727

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           M  +GL P   TY  ++ +Y RA+  E+      E+ E
Sbjct: 728 MVQHGLKPMELTYRRVVESYCRAKRFEEARGFLSEVSE 765



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 157 NKLKASK----EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARM 212
           N+LK S+    +V+ YN  +  F K   + +A+R+  +M+  G+ P  VT+ TL+     
Sbjct: 655 NQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSS 714

Query: 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
             + ++A E    M   G  P  LTY  ++++Y RA   E A G            D  A
Sbjct: 715 LEMFSEAREVIGYMVQHGLKPMELTYRRVVESYCRAKRFEEARGFLSEVSETDLDFDKKA 774

Query: 273 FSTLIK 278
               I+
Sbjct: 775 LEAYIE 780


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 158/317 (49%), Gaps = 3/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y+  +  F +   +D A +LF  M++ G  P+ VT++TL+S    N L ++A E  +
Sbjct: 196 VVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLD 255

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  PD  +Y +++    + G ++MA  +++   N     D  A+STLI     AG
Sbjct: 256 EMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAG 315

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D    ++E+M+    +P+++T+  L+D + +  R  + + + + M D   +PN  TY+
Sbjct: 316 RLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYS 375

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKS 403
           SL+    +     D   V++ M  +G++ +V  YN+L+   C   G  D A  + E+M +
Sbjct: 376 SLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNG-VDSALLLMEEMTA 434

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +  C PD  T++++I      G+  EA  +F +M      P++   + LI  + K +R D
Sbjct: 435 T-GCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERID 493

Query: 464 DVVRALNRLPELGITPD 480
                 + + +  + PD
Sbjct: 494 MARTLFDDMLKQAVLPD 510



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 152/320 (47%), Gaps = 7/320 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +  F     +D A  L ++M   G  PD +T++TLI          +A   F 
Sbjct: 406 VVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFG 465

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M +  C+PD +TYS +I  + +   ++MA  L+D    +    D   FSTL++ Y  AG
Sbjct: 466 DMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAG 525

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D    + EEM A    P++ TY +L+D   +  R  + + + K M   G  PN  TY 
Sbjct: 526 LVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYT 585

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+ A+ RA        +  EM   G+Q +V  Y +L+      G  +EA +I E ++  
Sbjct: 586 ALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERD 645

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ--CYGKAQRT 462
           ENC+ D + +  M+      G++S A  +   + ++G  P   +  +LI+  C GK    
Sbjct: 646 ENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGK---- 701

Query: 463 DDVVRALNRLPELGITPDDR 482
            ++ +A+  L E+ ++   R
Sbjct: 702 -ELGKAMEVLEEMTLSRKSR 720



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 162/371 (43%), Gaps = 33/371 (8%)

Query: 142 MTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNV 201
           M++PD A     + + +      V  YN   +   + R +D+   +  +    G+ P+  
Sbjct: 1   MSDPDAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVF 60

Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
           T++ +I     +   +KA E  E M   G  PDA  Y+ +I A  +A N   A   +   
Sbjct: 61  TYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSM 120

Query: 262 RNEK----WRI------------DPNAFSTLIKLYGTAGN-------FDGCLNVY----- 293
             EK    W I            +   +   +K  GT  N        +G   V+     
Sbjct: 121 ECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRA 180

Query: 294 ----EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
               +EMK  G+ PN++TY+ ++    R  +      ++++M +NG  PN  TY +LL  
Sbjct: 181 YLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSG 240

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
             R    ++   +  EM+E+G+Q     Y+TL+A     G  D A ++FED  S+ +C P
Sbjct: 241 LCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFED-NSNGDCPP 299

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           D   +S++I      G++ EA  +F +M E   EP++   T+L+    K  R  +  + L
Sbjct: 300 DVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVL 359

Query: 470 NRLPELGITPD 480
             + +   TP+
Sbjct: 360 ETMEDRNCTPN 370



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 145/317 (45%), Gaps = 36/317 (11%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   M    K   L +A+++ + M DR   P+ +T+S+LI           A E F
Sbjct: 335 DVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVF 394

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           +RM   G +P+ +TY+S+I  +     V                                
Sbjct: 395 KRMIVRGIEPNVVTYNSLIHGFCMTNGV-------------------------------- 422

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D  L + EEM A G  P++ITYN L+D + +  R  +   ++ +M     +P+  TY
Sbjct: 423 ---DSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITY 479

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+  + +    +   +++ +M ++ +   V  ++TL+    + G  D+A  + E+M +
Sbjct: 480 SCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVA 539

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S +C PD +T++S++      G++ EA  +   M + G +PN+   T+LI  + +A +  
Sbjct: 540 S-DCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPT 598

Query: 464 DVVRALNRLPELGITPD 480
              R L  +   G+ P+
Sbjct: 599 VAYRLLEEMVGNGVQPN 615



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 109/488 (22%), Positives = 200/488 (40%), Gaps = 45/488 (9%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC--------------- 209
           V  Y V ++   K  DLDKA  L ++M + G  PD   ++ +I                 
Sbjct: 59  VFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFR 118

Query: 210 ------------------ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
                              + N LP +A  +F +M   G  P+  TY+ +I+ + +   V
Sbjct: 119 SMECEKNVITWTIMIDGLCKANRLP-EATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKV 177

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
             A+ L    +      +   +ST+I  +      D    ++ +M   G  PN++TYN L
Sbjct: 178 HRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTL 237

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           L  + R     +   +  EM + GL P+  +Y +L+    +    +  L V+ +      
Sbjct: 238 LSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDC 297

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEA 430
              V  Y+TL+A     G  DEA ++FE M+ + +C+PD  TF++++    C+G ++ EA
Sbjct: 298 PPDVVAYSTLIAGLCKAGRLDEACKLFEKMREN-SCEPDVVTFTALMD-GLCKGDRLQEA 355

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
           + +   M +    PN+   +SLI    K  +  D      R+   GI P+      L++ 
Sbjct: 356 QQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHG 415

Query: 491 MTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYC 550
              T   +   L   + +  +  G +  ++     I+G  K       N +  D+K  +C
Sbjct: 416 FCMTNGVDSALL---LMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFC 472

Query: 551 NCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWI 610
           N   D+     L+   CKL  + +   ++ D+  ++     +   +L  G     L   +
Sbjct: 473 N--PDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGL---V 527

Query: 611 NDLSKALE 618
           +D  + LE
Sbjct: 528 DDAERLLE 535



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 124/276 (44%), Gaps = 1/276 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI Y+  +  F K   +D A  LFDDML + V PD VTFSTL+       L + A    
Sbjct: 475 DVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLL 534

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M +  C PD  TY+S++D + + G +  A  +  R      + +   ++ LI  +  A
Sbjct: 535 EEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRA 594

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNT 342
           G       + EEM   GV+PN+ITY +L+          + + I + +  D     +   
Sbjct: 595 GKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFA 654

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y  ++    R       L +   +K+ G      +Y  L+          +A E+ E+M 
Sbjct: 655 YRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMT 714

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
            S   +P++  + ++I   +  G+  EA A+ +E+L
Sbjct: 715 LSRKSRPNAEAYEAVIQELAREGRHEEANALADELL 750



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 2/207 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V  Y   +  F K   + +A R+   M  RG +P+ VT++ LI        P  A  
Sbjct: 543 SPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYR 602

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR-ARNEKWRIDPNAFSTLIKLY 280
             E M   G  P+ +TY S+I  +   G++E A  + +R  R+E  + D  A+  ++   
Sbjct: 603 LLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGL 662

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PN 339
              G     L + E +K  G  P    Y  L+  + + K   +   + +EMT +  S PN
Sbjct: 663 CRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPN 722

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREM 366
              Y ++++   R    E+  ++  E+
Sbjct: 723 AEAYEAVIQELAREGRHEEANALADEL 749


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 200/414 (48%), Gaps = 10/414 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           ++  M    K R++     L ++M   G++P+  T++  I     +   ++A    +RM 
Sbjct: 232 FSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMD 291

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC PD +TY+ +IDA   A  ++ A  L+ + ++   + D   + TL+  +   G+ D
Sbjct: 292 DDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLD 351

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++ EM+A G  P+++T+  L++ + +A R  +   +   M   G+ PN +TY +L+
Sbjct: 352 KVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLI 411

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               RA   +D L ++  M+  G++ +   Y  L+      G+  +A E FE MK +   
Sbjct: 412 SGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMK-ARGI 470

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+    ++ +   +  G++ EA+AMFNE+  +G  P+      +++CY K  + D+ ++
Sbjct: 471 APNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIK 530

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV-KLLLEEQD 525
            L+ + ++   PD      L++ + +  + EE  ++   +E+ N     V   +LL    
Sbjct: 531 LLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLG 590

Query: 526 IEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVY 579
            EG  +K A +LF S++         C  +      LL+  CK  E+ L L+++
Sbjct: 591 KEGQIQK-AVQLFESMNGH------GCSPNTITFNTLLDCLCKNDEVDLALKMF 637



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 159/341 (46%), Gaps = 11/341 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI----SCARMNNLPNKA 219
           +V+ Y V +      R LD A  LF  M     KPD VT+ TL+     C  +    +K 
Sbjct: 298 DVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHL----DKV 353

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
            + +  M + G  PD +T++ +++A  +AG +  AF L D  R +    + + ++TLI  
Sbjct: 354 EKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISG 413

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
              A   D  L+++  M+++GV+P   TY  L+D  G++  P +    +++M   G++PN
Sbjct: 414 LLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPN 473

Query: 340 WNT-YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
                ASL       R GE   +++ E+K  G+      YN ++   + VG  DEA ++ 
Sbjct: 474 IVACNASLYSLAEMGRLGEAK-AMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLL 532

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
            +M S   C+PD    +S+I      G+V EA  MF  M E    P +     L+   GK
Sbjct: 533 SEM-SKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGK 591

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 499
             +    V+    +   G +P+      LL+ + +  + +L
Sbjct: 592 EGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDL 632



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 134/252 (53%), Gaps = 1/252 (0%)

Query: 166  ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
            I YN+ +    K   LDKA  L+ +++     P   TF  LI     +   + A E F+ 
Sbjct: 861  ITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDG 920

Query: 226  MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
            M  +GC P++  Y+ +++ YG+ G+V+ A   + R   E  R D  +++ L+ +   AG 
Sbjct: 921  MVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGR 980

Query: 286  FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
             D  L+ +E++K  G+ P+++ YN +++ +GR++R  +  +++ EM + G+ P+  TY S
Sbjct: 981  VDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNS 1040

Query: 346  LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
            L+   G     E+   +Y E++  G++ +V  YN L+      G ++ A+ I++ M    
Sbjct: 1041 LILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVG- 1099

Query: 406  NCQPDSWTFSSM 417
             C P++ TF+ +
Sbjct: 1100 GCDPNTGTFAQL 1111



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 144/302 (47%), Gaps = 1/302 (0%)

Query: 155  FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
            FT +L     + +YN+ +  F +  +++ A  LF++M   G  PD  T+++LI     + 
Sbjct: 780  FTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSG 839

Query: 215  LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
              N+  + ++ M + GC P+ +TY+ +I    ++  ++ A  LY    +  +   P  F 
Sbjct: 840  KINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFG 899

Query: 275  TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
             LI     +G  D    +++ M   G +PN   YN L++  G+          +K M   
Sbjct: 900  PLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKE 959

Query: 335  GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
            G+ P+  +Y  L+     A   +D L  + ++K+ G+   +  YN ++        T+EA
Sbjct: 960  GIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEA 1019

Query: 395  FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
              +F +M+ +    PD +T++S+I      G + EA  ++ E+   G +PN+F   +LI+
Sbjct: 1020 LSLFHEMQ-NRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIR 1078

Query: 455  CY 456
             Y
Sbjct: 1079 GY 1080



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 137/277 (49%), Gaps = 2/277 (0%)

Query: 229  FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
             G  P    Y+ +ID +    NVE+A+ L++  ++     D   +++LI  +G +G  + 
Sbjct: 784  LGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINE 843

Query: 289  CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
              ++Y+EM   G KPN ITYN ++  + ++ R  +   +Y  +     SP   T+  L+ 
Sbjct: 844  LFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLID 903

Query: 349  AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
               ++   +D   ++  M   G + +  +YN L+     +G+ D A E F+ M   E  +
Sbjct: 904  GLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRM-VKEGIR 962

Query: 409  PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
            PD  +++ ++ I    G+V +A   F ++ +AG +P+L     +I   G++QRT++ +  
Sbjct: 963  PDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSL 1022

Query: 469  LNRLPELGITPD-DRFCGCLLNVMTQTPKEELGKLVE 504
             + +   GI PD   +   +LN+      EE GK+ E
Sbjct: 1023 FHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYE 1059



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 150/311 (48%), Gaps = 1/311 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +++ R  R ++    +FD M  + ++ +  T+  +     +     +A    E+M  
Sbjct: 128 NHMLEILRVHRRVEDMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMRE 187

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G   +A +Y+ +I    ++G  + A  +Y R  +E  +     FS L+   G   N   
Sbjct: 188 AGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKT 247

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            + + EEM+++G++PN+ TY   +  +GR  +  +   I K M D+G  P+  TY  L+ 
Sbjct: 248 VMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLID 307

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A   AR  +D + ++ +MK    +     Y TLL   +D G+ D+  +I+ +M+ ++   
Sbjct: 308 ALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEME-ADGYA 366

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD  TF+ ++      G+++EA  + + M + G  PNL    +LI    +A R DD +  
Sbjct: 367 PDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDL 426

Query: 469 LNRLPELGITP 479
            + +  LG+ P
Sbjct: 427 FSNMESLGVEP 437



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 131/288 (45%), Gaps = 5/288 (1%)

Query: 195  GVKPDNVTFSTLISCARMNNLPNKAVEW--FERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
            GVKP    ++ LI       + N  V W  FE M S GC PD  TY+S+IDA+G++G + 
Sbjct: 785  GVKPTLKVYNLLID--GFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKIN 842

Query: 253  MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
              F LYD       + +   ++ +I     +   D  +++Y  + +    P   T+  L+
Sbjct: 843  ELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLI 902

Query: 313  DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
            D + ++ R      ++  M   G  PN   Y  L+  YG+  + +     ++ M ++G++
Sbjct: 903  DGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIR 962

Query: 373  LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
              +  Y  L+ +    G  D+A   FE +K +    PD   ++ MI       +  EA +
Sbjct: 963  PDLKSYTILVDILCIAGRVDDALHYFEKLKQA-GLDPDLVAYNLMINGLGRSQRTEEALS 1021

Query: 433  MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +F+EM   G  P+L+   SLI   G     ++  +    L  +G+ P+
Sbjct: 1022 LFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPN 1069



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 165/347 (47%), Gaps = 9/347 (2%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           + +V+ + + +    K   +++A  L D M  +GV P+  T++TLIS     N  + A++
Sbjct: 366 APDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALD 425

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F  M S G +P A TY  +ID +G++G+   A   +++ +     I PN  +    LY 
Sbjct: 426 LFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARG--IAPNIVACNASLYS 483

Query: 282 TA--GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
            A  G       ++ E+K+ G+ P+ +TYN ++    +  +  +   +  EM+     P+
Sbjct: 484 LAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPD 543

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
                SL+    +A   E+   ++  M+E  +  +V  YN LLA     G   +A ++FE
Sbjct: 544 VIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFE 603

Query: 400 DMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
            M +   C P++ TF++++  C C+  +V  A  MF +M      P++    ++I  + K
Sbjct: 604 SM-NGHGCSPNTITFNTLLD-CLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIK 661

Query: 459 AQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPKEELGKLVE 504
             +  + +   +++ +L + PD    C  L  V+     E+  ++ E
Sbjct: 662 QNQIKNAIWLFHQMKKL-LRPDHVTLCTLLPGVIKSGQIEDAFRITE 707



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 138/288 (47%), Gaps = 9/288 (3%)

Query: 118 DVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKA---SKEVILYNVTMKV 174
           D+FS +  LG +      +++++          AL  F  K+KA   +  ++  N ++  
Sbjct: 425 DLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETF-EKMKARGIAPNIVACNASLYS 483

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
             +   L +A+ +F+++   G+ PD+VT++ ++ C       ++A++    M    C+PD
Sbjct: 484 LAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPD 543

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNV 292
            +  +S+ID   +AG VE A+ ++   R E+  + P    ++ L+   G  G     + +
Sbjct: 544 VIVINSLIDTLYKAGRVEEAWQMF--CRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQL 601

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           +E M   G  PN IT+N LLD + +         ++ +MT     P+  T+ +++  + +
Sbjct: 602 FESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIK 661

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
               ++ + ++ +MK+      VTL  TLL      G  ++AF I ED
Sbjct: 662 QNQIKNAIWLFHQMKKLLRPDHVTLC-TLLPGVIKSGQIEDAFRITED 708



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 114/246 (46%), Gaps = 4/246 (1%)

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           +MAF ++D  + +  R + + +  + K     G      +  E+M+  G   N  +YN L
Sbjct: 142 DMAF-VFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGL 200

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +  + ++    +   +Y+ M   GL P+  T+++L+ A G+ R  +  + +  EM+  G+
Sbjct: 201 IHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGL 260

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEA 430
           + ++  Y   + +    G  DEA+ I + M   + C PD  T++ +I  +C+ R K+ +A
Sbjct: 261 RPNIYTYTICIRVLGRDGKIDEAYRIMKRM-DDDGCGPDVVTYTVLIDALCTAR-KLDDA 318

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
             +F +M  +  +P+     +L+  +      D V +    +   G  PD      L+N 
Sbjct: 319 MCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNA 378

Query: 491 MTQTPK 496
           + +  +
Sbjct: 379 LCKAGR 384


>gi|255661188|gb|ACU25763.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
          Length = 426

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 166/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVF 137

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 138 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 195

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   +  N++TYN+++   G+     +   + +EM + G+ PN  
Sbjct: 196 DAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSI 255

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   LY T++      G    A  +  ++
Sbjct: 256 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHEL 315

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           KS +N   D+      I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++
Sbjct: 316 KSPDNIPRDT-----AIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKK 370

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +++   +++  LG  PD      +LN
Sbjct: 371 YANLIEVFDKMRGLGYFPDSNVIALVLN 398



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 148/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K +  +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKSPDNIPRD 324



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + Y +MI AY RAG V  A     R  +E    
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHA----KRLLHELKSP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++    + K+   +  ++
Sbjct: 319 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKKYANLIEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQEVG 420


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 168/334 (50%), Gaps = 5/334 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL+L     K K   +V++YN  +    K + +D A  LF +M ++G++PD  T+S+LIS
Sbjct: 242 ALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLIS 301

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           C       + A      M     +P+ +T+S++IDA+ + G +  A  LYD     K  I
Sbjct: 302 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI--KRSI 359

Query: 269 DPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           DP+ F  S+LI  +      D   +++E M +    PN++TY+ L+    +AKR  +   
Sbjct: 360 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGME 419

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +++EM+  GL  N  TY +L+  + +AR  ++   V+++M   G+  ++  YN LL    
Sbjct: 420 LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLC 479

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G   +A  +FE ++ S   +PD +T++ MI      GKV +   +F  +   G  PN+
Sbjct: 480 KNGKLAKAMVVFEYLQRS-TMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNV 538

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               ++I  + +    ++    L ++ E G  P+
Sbjct: 539 IAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPN 572



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 171/347 (49%), Gaps = 5/347 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I +N        +LAL      +K   E  ++  +  +  +   + +  A  L D M++ 
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G KPD  TF+TLI    ++N  ++AV   ++M   GC PD +TY ++++   + G++++A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             L  +    K   D   ++T+I       + D  LN++ EM   G++P++ TY++L+  
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +    R      +  +M +  ++PN  T+++L+ A+ +     +   +Y EM ++ +   
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 362

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAM 433
           +  Y++L+         DEA  +FE M  S++C P+  T+S++I   C  + +V E   +
Sbjct: 363 IFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYSTLIKGFCKAK-RVEEGMEL 420

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           F EM + G   N    T+LI  + +A+  D+      ++  +G+ P+
Sbjct: 421 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPN 467



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 146/283 (51%), Gaps = 1/283 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K +  V+ ++  +  F K   L +AE+L+D+M+ R + PD  T+S+LI+   M++  ++A
Sbjct: 323 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 382

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              FE M S  C P+ +TYS++I  + +A  VE    L+          +   ++TLI  
Sbjct: 383 KHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHG 442

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +  A + D    V+++M ++GV PN++TYN LLD + +  +  +   +++ +  + + P+
Sbjct: 443 FFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPD 502

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY  ++    +A   ED   ++  +  KG+  +V  YNT+++     G  +EA  + +
Sbjct: 503 IYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLK 562

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            MK  +   P+S T++++I      G    +  +  EM   GF
Sbjct: 563 KMK-EDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGF 604



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 167/358 (46%), Gaps = 12/358 (3%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASK--EVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+ N +++      A+  F + +K+     ++ +N  +    K    +    L + M   
Sbjct: 53  ILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTL 112

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G+  D  T+S  I+C    +  + A+    +M   G +PD +T SS+++ Y  +  +  A
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             L D+     ++ D   F+TLI            + + ++M   G +P+++TY  +++ 
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           + +        ++ K+M    +  +   Y +++    + ++ +D L+++ EM  KG++  
Sbjct: 233 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPD 292

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           V  Y++L++   + G   +A  +  DM       P+  TFS++I      GK+ EAE ++
Sbjct: 293 VFTYSSLISCLCNYGRWSDASRLLSDM-IERKINPNVVTFSALIDAFVKEGKLVEAEKLY 351

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           +EM++   +P++F  +SLI  +    R D+       + EL I+ D     C  NV+T
Sbjct: 352 DEMIKRSIDPDIFTYSSLINGFCMHDRLDEA----KHMFELMISKD-----CFPNVVT 400



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 111/231 (48%), Gaps = 1/231 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y+  +K F K + +++   LF +M  RG+  + VT++TLI         + A   F+
Sbjct: 398 VVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK 457

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M S G  P+ LTY+ ++D   + G +  A  +++  +      D   ++ +I+    AG
Sbjct: 458 QMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAG 517

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +    ++  +   GV PN+I YN ++    R     +  ++ K+M ++G  PN  TY 
Sbjct: 518 KVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYN 577

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           +L+RA  R    E +  + +EM+  G     +    +  M  D G  D++F
Sbjct: 578 TLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD-GRLDKSF 627


>gi|410110073|gb|AFV61116.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           virgata]
          Length = 424

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 85  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVF 144

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 145 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 202

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   +  N++TYN+++   G+     +   + +EM + G+ PN  
Sbjct: 203 DAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSI 262

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   LY T+       G    A  +  ++
Sbjct: 263 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMXVAYERAGLVAHAKRLLHEL 322

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           KS +N   D     + I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++
Sbjct: 323 KSPDNIPRD-----TAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKK 377

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +V+   +++  LG  PD      +LN
Sbjct: 378 YANVIEVFDKMRGLGYFPDSNVIALVLN 405



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 140/294 (47%), Gaps = 1/294 (0%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LFD+M  R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 62

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           +  +   A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  
Sbjct: 63  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTA 122

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           +Y+ LL      K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 182

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           ++ G++ +V  YNTLL +  D     EA  +F  M+  +N   +  T++SM+ I     +
Sbjct: 183 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIVQNVVTYNSMMMIYGKTLE 241

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             +A  +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 242 HEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 295



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 116/243 (47%), Gaps = 1/243 (0%)

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 2   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 61

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +     +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  + 
Sbjct: 62  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNT 121

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 122 ASYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFW 180

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
            M + G EPN+    +L++ YG A+   + +     +    I  +      ++ +  +T 
Sbjct: 181 GMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTL 240

Query: 496 KEE 498
           + E
Sbjct: 241 EHE 243



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 102/219 (46%), Gaps = 4/219 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 210 AIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 269

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + Y +M  AY RAG V  A     R  +E    
Sbjct: 270 IWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMXVAYERAGLVAHA----KRLLHELKSP 325

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 326 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKKYANVIEVF 385

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
            +M   G  P+ N  A +L AYG+    +    VY EM+
Sbjct: 386 DKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQ 424



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/213 (19%), Positives = 97/213 (45%), Gaps = 4/213 (1%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K+     V+ YN  ++V+       +A  LF  M  + +  + VT+++++          
Sbjct: 184 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHE 243

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           KA    + M + G +P+++TYS++I  +G+ G ++ A  L+ + R+    ID   + T+ 
Sbjct: 244 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMX 303

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             Y  AG       +  E+K+    P+ I  +  +  +  A R  +   ++++  D G  
Sbjct: 304 VAYERAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEV 359

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +   +  ++  + + +   + + V+ +M+  G
Sbjct: 360 KDITVFERMIHLFSKYKKYANVIEVFDKMRGLG 392


>gi|30694913|ref|NP_191463.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525907|sp|Q9LYT2.2|PP287_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g59040
 gi|332646344|gb|AEE79865.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 157/318 (49%), Gaps = 7/318 (2%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           + K  + + AER+   +   G  P+ ++++ L+         N A   F RM S G +P 
Sbjct: 149 YGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPS 208

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEK---WRIDPNAFSTLIKLYGTAGNFDGCLN 291
           A+TY  ++  +      + A  +++   +EK    + D   +  +I +Y  AGN++    
Sbjct: 209 AITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARK 268

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           V+  M   GV  + +TYN+L+      K   +V  IY +M  + + P+  +YA L++AYG
Sbjct: 269 VFSSMVGKGVPQSTVTYNSLMSFETSYK---EVSKIYDQMQRSDIQPDVVSYALLIKAYG 325

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           RAR  E+ LSV+ EM + G++ +   YN LL   A  G  ++A  +F+ M+  +   PD 
Sbjct: 326 RARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRR-DRIFPDL 384

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
           W++++M++       +  AE  F  +   GFEPN+    +LI+ Y KA   + ++    +
Sbjct: 385 WSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEK 444

Query: 472 LPELGITPDDRFCGCLLN 489
           +   GI  +      +++
Sbjct: 445 MRLSGIKANQTILTTIMD 462



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 145/305 (47%), Gaps = 15/305 (4%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVI-----LYNVTMKVFRKCRDLDKAERLFDDM 191
           IIL      D    A   F   L   K  +     +Y++ + +++K  + +KA ++F  M
Sbjct: 214 IILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSM 273

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
           + +GV    VT+++L+S        +K    +++M      PD ++Y+ +I AYGRA   
Sbjct: 274 VGKGVPQSTVTYNSLMSFETSYKEVSKI---YDQMQRSDIQPDVVSYALLIKAYGRARRE 330

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           E A  +++   +   R    A++ L+  +  +G  +    V++ M+   + P++ +Y  +
Sbjct: 331 EEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTM 390

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           L     A      +  +K +  +G  PN  TY +L++ Y +A   E  + VY +M+  G+
Sbjct: 391 LSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGI 450

Query: 372 QLSVTLYNTLL---AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
           + + T+  T++     C + G    A   +++M+S     PD    + ++++ S + ++ 
Sbjct: 451 KANQTILTTIMDASGRCKNFG---SALGWYKEMESC-GVPPDQKAKNVLLSLASTQDELE 506

Query: 429 EAEAM 433
           EA+ +
Sbjct: 507 EAKEL 511



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 152/366 (41%), Gaps = 44/366 (12%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRG---VKPDNVTFSTLISCARMNNLPNKAVEW 222
           I Y + +K F +     +AE +F+ +LD     +KPD   +  +I   +      KA + 
Sbjct: 210 ITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKV 269

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F  M   G     +TY+S++        V     +YD+ +    + D  +++ LIK YG 
Sbjct: 270 FSSMVGKGVPQSTVTYNSLMSFETSYKEVS---KIYDQMQRSDIQPDVVSYALLIKAYGR 326

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           A   +  L+V+EEM   GV+P    YN LLD    +    Q KT++K M  + + P+  +
Sbjct: 327 ARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWS 386

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y ++L AY  A   E     ++ +K  G + ++  Y TL+   A     ++  E++E M+
Sbjct: 387 YTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMR 446

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            S                                    G + N  +LT+++   G+ +  
Sbjct: 447 LS------------------------------------GIKANQTILTTIMDASGRCKNF 470

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLE 522
              +     +   G+ PD +    LL++   + ++EL +  E     N     + ++   
Sbjct: 471 GSALGWYKEMESCGVPPDQKAKNVLLSL--ASTQDELEEAKELTGIRNETATIIARVYGS 528

Query: 523 EQDIEG 528
           + D EG
Sbjct: 529 DDDEEG 534



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 115/241 (47%), Gaps = 7/241 (2%)

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           W      F  LI  YG  GNF+G   V   +  +G  PN+I+Y  L+++ GR  +    +
Sbjct: 135 WNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAE 194

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
            I++ M  +G  P+  TY  +L+ +    + +  E+      + K+  ++    +Y+ ++
Sbjct: 195 AIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMI 254

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            M    G  ++A ++F  M   +     + T++S+++  +   +VS+   ++++M  +  
Sbjct: 255 YMYKKAGNYEKARKVFSSM-VGKGVPQSTVTYNSLMSFETSYKEVSK---IYDQMQRSDI 310

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 502
           +P++     LI+ YG+A+R ++ +     + + G+ P  +    LL+    +   E  K 
Sbjct: 311 QPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKT 370

Query: 503 V 503
           V
Sbjct: 371 V 371


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 161/324 (49%), Gaps = 3/324 (0%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLP 216
           ++  S +V+ YN  +  + K   L++   LF++M D G  PD +T++ LI+C  +   +P
Sbjct: 258 EMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMP 317

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
            +A E+F  M + G  P+ +TYS++IDA+ + G ++ A  L    R      +   +++L
Sbjct: 318 -RAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSL 376

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           I     AGN      +  +M   GVK N++TY  LLD + +A R  + + +++ M  +G+
Sbjct: 377 IDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGI 436

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
           SPN   Y +L+  Y +A   ED + + ++M E  ++  + LY +++         +E   
Sbjct: 437 SPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKL 496

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           I E+MK S     +    +++I      GK S+A   F EM + G E  +     LI   
Sbjct: 497 ILEEMK-SRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGL 555

Query: 457 GKAQRTDDVVRALNRLPELGITPD 480
            +A   +  V    R+  LG+ P+
Sbjct: 556 CEAGIVELAVDYFCRMLSLGLQPN 579



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 191/414 (46%), Gaps = 56/414 (13%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
             + F+DM+  G+ P   T++ +I    +  +L N     F +M   G  PD +TY+S+I
Sbjct: 214 VRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSR-RLFVQMREMGLSPDVVTYNSLI 272

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
           D YG+ G++E    L++                                   EMK +G  
Sbjct: 273 DGYGKVGSLEEVASLFN-----------------------------------EMKDVGCV 297

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P++ITYN L++   + ++  +    + EM +NGL PN  TY++L+ A+ +    +  + +
Sbjct: 298 PDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKL 357

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
             +M+  G+  +   Y +L+      G   EA+++  DM  +   + +  T+++++    
Sbjct: 358 LXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQA-GVKLNIVTYTALLDGLC 416

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
             G++ EAE +F  ML+ G  PN  V T+L+  Y KA+R +D ++ L ++ E  I PD  
Sbjct: 417 KAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLI 476

Query: 483 FCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFK----KEATELF 538
             G ++       K E  KL+  +E+  S+ G     ++    I+  FK     +A   F
Sbjct: 477 LYGSIIWGHCSQRKLEETKLI--LEEMKSR-GISANPVISTTIIDAYFKAGKSSDALNFF 533

Query: 539 NSISKDVKKA----YCNCLIDLCVNLNLLENA----CKLLELGL--TLEVYTDI 582
             +     +A    YC  LID      ++E A    C++L LGL   + VYT +
Sbjct: 534 QEMQDVGVEATIVTYC-VLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSL 586



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/416 (23%), Positives = 173/416 (41%), Gaps = 74/416 (17%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I YN  +  + K   + +A   F +M + G+KP+ VT+STLI       +   A++  
Sbjct: 299 DIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLL 358

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF-----------------------GLYDR 260
             M   G  P+  TY+S+IDA  +AGN+  A+                       GL   
Sbjct: 359 XDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKA 418

Query: 261 AR----NEKWR------IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
            R     E +R      I PN   ++ L+  Y  A   +  + + ++M    +KP++I Y
Sbjct: 419 GRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILY 478

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
            +++      ++  + K I +EM   G+S N     +++ AY +A    D L+ ++EM++
Sbjct: 479 GSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQD 538

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS------------------SENC--- 407
            G++ ++  Y  L+    + G  + A + F  M S                    NC   
Sbjct: 539 VGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIES 598

Query: 408 -------------QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
                         PD   F+++I      G + EA  + + M E   E +L V TSL+ 
Sbjct: 599 AKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVS 658

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 510
            + +        +  N + E GI P++  C CLL    +      G+L E +E  N
Sbjct: 659 GFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKR-----GQLDEAIELKN 709



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 135/312 (43%), Gaps = 1/312 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ Y   +    K   + +AE +F  ML  G+ P+   ++ L+           A++  +
Sbjct: 405 IVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILK 464

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M      PD + Y S+I  +     +E    + +  ++     +P   +T+I  Y  AG
Sbjct: 465 QMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAG 524

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                LN ++EM+ +GV+  ++TY  L+D +  A         +  M   GL PN   Y 
Sbjct: 525 KSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYT 584

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL+         E    ++ EM+ +GM   +T +  L+      G   EA  +   M + 
Sbjct: 585 SLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRM-TE 643

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              + D   ++S+++  S  G++ +A   FNEM+E G  P   +   L++ Y K  + D+
Sbjct: 644 LAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDE 703

Query: 465 VVRALNRLPELG 476
            +   N +  + 
Sbjct: 704 AIELKNEMERMA 715



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 159/364 (43%), Gaps = 22/364 (6%)

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST--LIKLYGTAGNFDG 288
           C   +  +  +   +   G +E A   + R RN  +R  P A S   L+     +GN   
Sbjct: 156 CVSGSGVFDVLFSVFVELGLLEEANECFSRMRN--FRTLPKARSCNFLLHRLSKSGNGQL 213

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
               + +M   G+ P++ TYN ++D + +       + ++ +M + GLSP+  TY SL+ 
Sbjct: 214 VRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLID 273

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            YG+    E+  S++ EMK+ G    +  YN L+           AFE F +MK++   +
Sbjct: 274 GYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNN-GLK 332

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           P+  T+S++I      G +  A  +  +M   G  PN F  TSLI    KA    +  + 
Sbjct: 333 PNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKL 392

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEE----LGKLVECVEKSNSKL--GYVVKLLLE 522
           LN + + G+          LN++T T   +     G+++E  E   S L  G      + 
Sbjct: 393 LNDMLQAGVK---------LNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVY 443

Query: 523 EQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 582
              + G  K E  E    I K + +  CN   DL +  +++   C   +L  T  +  ++
Sbjct: 444 TALVHGYIKAERMEDAMKILKQMTE--CNIKPDLILYGSIIWGHCSQRKLEETKLILEEM 501

Query: 583 QSRS 586
           +SR 
Sbjct: 502 KSRG 505



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 105/239 (43%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++ILY   +      R L++ + + ++M  RG+  + V  +T+I         + A+ +F
Sbjct: 474 DLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFF 533

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   G +   +TY  +ID    AG VE+A   + R  +   + +   +++LI      
Sbjct: 534 QEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXN 593

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              +    +++EM+  G+ P++  +  L+D   +     +   +   MT+  +  + + Y
Sbjct: 594 NCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVY 653

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
            SL+  + +          + EM EKG+     L   LL      G  DEA E+  +M+
Sbjct: 654 TSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEME 712


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 166/343 (48%), Gaps = 5/343 (1%)

Query: 142 MTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD 199
           M+   TA  A  ++   L A    E  L+NV M+   +  +L  A+ +FD+M  RGV+  
Sbjct: 215 MSRFPTAPEACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRT 274

Query: 200 NVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
            V+F+T+IS   R  +L + A     RM   G  PD  TY ++I    R G +E A G++
Sbjct: 275 VVSFNTMISGMCRAGDL-DGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVF 333

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
           ++      + +   F+ LI  +   G+ +  L ++ EM+  GV+P+ +TYN +++ + RA
Sbjct: 334 EKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRA 393

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
           +       I  EM   GL P+  TY +L+  Y +    +  + + + M  +G+ L    Y
Sbjct: 394 RDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTY 453

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
             L++  +  G + +A  +  +M  +   +PD+ T++ +I     +G V     +  EM 
Sbjct: 454 TALISGLSKAGRSADAERVLGEMMEA-GLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQ 512

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
             G +P +     ++  + K  +  +    LN +  +G++PDD
Sbjct: 513 NKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDD 555



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 137/293 (46%), Gaps = 4/293 (1%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
            + +V  Y   ++   +   ++ A  +F+ M  RG+KP+ V F+ LI            +
Sbjct: 306 VTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETML 365

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E    M   G  PDA+TY+++++   RA +++ A G+    R+   R D   ++TLI  Y
Sbjct: 366 ELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGY 425

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
                 D  + + + M A GV  + +TY  L+  + +A R    + +  EM + GL P+ 
Sbjct: 426 CKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDN 485

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY  ++ A+ R    +  L + +EM+ KG +  V  YN ++     +G    A  +   
Sbjct: 486 TTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNA 545

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           M +     PD  T++ ++      GKV++ E + +     G  P+L V TS++
Sbjct: 546 MINI-GVSPDDITYNILLDGHCKHGKVTDIEELKS---AKGTVPDLGVYTSIV 594


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 177/375 (47%), Gaps = 16/375 (4%)

Query: 146 DTAALALTYFTN--KLKASKEVI-----LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKP 198
           D  ALAL  F    + +A   V+      Y++ M    + R  D    LF  +L  G+K 
Sbjct: 131 DGPALALALFNRVCREQAGPRVVPLTVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKI 190

Query: 199 DNVTFSTLISCARMNNLPNKAVE-WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
             +T STL+ C    N   +AV     RM   GC P+  +YS ++         + A  L
Sbjct: 191 HQITASTLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDL 250

Query: 258 YDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
           +     E     PN  A++T+I  +   G      +++ EM   GVKP+++TYN ++D +
Sbjct: 251 FQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDAL 310

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +A+   + + + ++MT NG  P+  TY  ++  Y      ++   ++R+MK +G+  ++
Sbjct: 311 CKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNI 370

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
            + N+ LA     G + EA EIF+ M +++  +PD  ++ +++   +  G  ++   +FN
Sbjct: 371 VICNSFLASLCKHGRSKEAAEIFDSM-TAKGHKPDIVSYCTLLHGYASEGWFADMIGLFN 429

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
            M   G   +  V   LI  Y K    DD +     + + G++PD      +++  ++  
Sbjct: 430 SMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSR-- 487

Query: 496 KEELGKLVECVEKSN 510
              +G+L + +EK N
Sbjct: 488 ---MGRLTDAMEKFN 499



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 153/317 (48%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN+ +    K R +DKAE +   M   G +PD VT++ +I          +A + F
Sbjct: 299 DVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMF 358

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M S G  P+ +  +S + +  + G  + A  ++D    +  + D  ++ TL+  Y + 
Sbjct: 359 RKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASE 418

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G F   + ++  MK+ G+  +   +N L+    +         I+ EM   G+SP+  TY
Sbjct: 419 GWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTY 478

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           ++++ A+ R     D +  + +M  +G+Q +  +Y++++      G   +A E+  +M +
Sbjct: 479 STVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMIN 538

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               +PD   F+S+I      G+V +A  +F+ + + G  P++   TSLI  Y    + D
Sbjct: 539 KGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMD 598

Query: 464 DVVRALNRLPELGITPD 480
              + L+ +  +G+  D
Sbjct: 599 KAFKILDAMEVVGVETD 615



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 146/289 (50%), Gaps = 2/289 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGV-KPDNVTFSTLISCARMNNLPNKAVEWFER 225
           +Y+  ++ F     L KA+ L  +M+++G+ +PD V F+++I+    +     A + F+ 
Sbjct: 512 VYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDL 571

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +   G  PD +T++S+ID Y   G ++ AF + D         D   +STL+  Y   G 
Sbjct: 572 VTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGR 631

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  L ++ EM+  GVKPN +TY  +L  + RA R    +  + EM ++G +   + Y  
Sbjct: 632 INDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGI 691

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +L    R    ++ + +++++    ++ S+T+ NT++     V   +EA E+F  + S+ 
Sbjct: 692 ILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATI-SAS 750

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
              P+  T+  MI      G V +A  MF+ M ++G  P   +L  +I+
Sbjct: 751 GLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRIIR 799



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 159/345 (46%), Gaps = 5/345 (1%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A L L   T    A  + + YN  +  +     L +A ++F  M  RG+ P+ V  ++
Sbjct: 317 DKAELVLRQMTTN-GAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNS 375

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
            ++    +    +A E F+ M + G  PD ++Y +++  Y   G      GL++  ++  
Sbjct: 376 FLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNG 435

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
              D   F+ LI  Y   G  D  + ++ EM+  GV P+++TY+ ++    R  R     
Sbjct: 436 IAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAM 495

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM-QLSVTLYNTLL-A 383
             + +M   G+ PN   Y S+++ +           +  EM  KG+ +  +  +N+++ +
Sbjct: 496 EKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINS 555

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
           +C D G   +A +IF D+ +    +PD  TF+S+I      GK+ +A  + + M   G E
Sbjct: 556 LCKD-GRVMDAHDIF-DLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVE 613

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
            ++   ++L+  Y K  R +D +     +   G+ P+    G +L
Sbjct: 614 TDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIML 658


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 182/386 (47%), Gaps = 18/386 (4%)

Query: 122 VLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDL 181
           +L CLG     ++ + I   M               K  A   V  YN+ + +  +   L
Sbjct: 131 ILTCLGKKRRVEEALRIFEEM---------------KRDAVPNVPTYNILIDMLCREGKL 175

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           + A  + DDM   G+ P+ +T + +I          +A   FE M    C P+A+T+SS+
Sbjct: 176 NAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSL 235

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           ID  G+ G V+ A+ LY++  +         +++LI+ +   G  +    +Y+EM   G 
Sbjct: 236 IDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGC 295

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            P++   N  +D + +A    + + +++E+  +G  P+  +Y+ L+    +A    +T  
Sbjct: 296 SPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYE 355

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           ++  MKE+G  L    YN ++      G  ++A+++ E+MK   +  P   T+ S+I   
Sbjct: 356 LFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGH-PPTVVTYGSVIDGL 414

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +   ++ EA  +F E    G + N+ V +SLI  +GK  R D+    +  L + G+TP+ 
Sbjct: 415 AKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNV 474

Query: 482 RFCGCLLNVMTQTPKEELGKLVECVE 507
               CLL+ + +   EE+ + + C +
Sbjct: 475 YTWNCLLDALVKA--EEINEALICFQ 498



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 148/316 (46%), Gaps = 3/316 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y   ++ F KC   +   +++ +M+  G  PD    +T + C        K    F  
Sbjct: 265 IVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFRE 324

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           + + G  PDA +YS +I    +AG     + L+   + +   +D +A++ +I  +  +G 
Sbjct: 325 INAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGK 384

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    + EEMK  G  P ++TY +++D + +  R  +   +++E   NG+  N   Y+S
Sbjct: 385 VNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSS 444

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  +G+    ++   +  E+ +KG+  +V  +N LL         +EA   F+ MK  +
Sbjct: 445 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLK 504

Query: 406 NCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            C P+  T+S +I  +C  R K ++A   + EM + G +PN    T++I    KA    +
Sbjct: 505 -CPPNQITYSILINGLCRVR-KFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILE 562

Query: 465 VVRALNRLPELGITPD 480
                +R    G  PD
Sbjct: 563 ASGLFSRFKANGGIPD 578



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 145/312 (46%), Gaps = 13/312 (4%)

Query: 200 NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG----------RAG 249
           N++   + +C +   L  +A +  + M  F   P    Y+ +I   G          +A 
Sbjct: 11  NISIELVANCVKSRKL-REAFDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWVLCKAN 69

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
            ++ A  L+++    +      A++T+I  YG+AG FD    + E  KA G  P++I YN
Sbjct: 70  RLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYN 129

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            +L  +G+ +R  +   I++EM  + + PN  TY  L+    R       L +  +M+  
Sbjct: 130 CILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIRDDMERA 188

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G+  +V   N ++         +EA  IFE M   + C P++ TFSS+I      G+V +
Sbjct: 189 GLFPNVLTVNIMIDRLCKAQKLEEACSIFEGM-DDKVCTPNAVTFSSLIDGLGKCGRVDD 247

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           A +++ +ML+ G  P   V TSLI+ + K  R +D  +    +   G +PD       ++
Sbjct: 248 AYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMD 307

Query: 490 VMTQTPKEELGK 501
            + +  + E G+
Sbjct: 308 CVFKAGETEKGR 319



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 131/269 (48%), Gaps = 1/269 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +    K    ++   LF  M ++G   D   ++ +I     +   NKA +  E M 
Sbjct: 337 YSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMK 396

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P  +TY S+ID   +   ++ A+ L++ A++   +++   +S+LI  +G  G  D
Sbjct: 397 VKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRID 456

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + EE+   G+ PN+ T+N LLD + +A+   +    ++ M D    PN  TY+ L+
Sbjct: 457 EAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILI 516

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               R R        ++EM++ G++ +   Y T+++  A  G   EA  +F   K++   
Sbjct: 517 NGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGI 576

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            PDS ++++MI   S   K  +A A+F E
Sbjct: 577 -PDSASYNAMIEGLSSANKAMDAYALFEE 604



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 107/250 (42%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y   +    K   LD+A  LF++    G+K + V +S+LI         ++A    E
Sbjct: 404 VVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIME 463

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G  P+  T++ ++DA  +A  +  A   +   ++ K   +   +S LI       
Sbjct: 464 ELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVR 523

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            F+     ++EM+ +G+KPN ITY  ++  + +A    +   ++     NG  P+  +Y 
Sbjct: 524 KFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYN 583

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +++     A    D  +++ E + KG  +       LL         ++A  +   +K +
Sbjct: 584 AMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQAAIVGAVLKET 643

Query: 405 ENCQPDSWTF 414
              Q  S +F
Sbjct: 644 AKSQHASRSF 653



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPN 217
           LK     I Y++ +    + R  +KA   + +M   G+KP+ +T++T+IS  A+  N+  
Sbjct: 503 LKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNIL- 561

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           +A   F R  + G  PD+ +Y++MI+    A     A+ L++  R
Sbjct: 562 EASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETR 606


>gi|255661190|gb|ACU25764.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 426

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 167/330 (50%), Gaps = 9/330 (2%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +++ YN  + VF K +   +A  L  +M   GV P+ V++STL++    N    +A+ 
Sbjct: 76  SPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLLTMYVENKKFLEALT 135

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKL 279
            F  M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++
Sbjct: 136 VFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRV 193

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           YG A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN
Sbjct: 194 YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPN 253

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY++++  + +    +    ++++++  G+++   LY T++      G    A  +  
Sbjct: 254 SITYSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLH 313

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           ++K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I  + K 
Sbjct: 314 ELK-----RPDNIPRDTAIHILAGSGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKY 368

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           ++  +VV   +++  LG  PD      +LN
Sbjct: 369 KKYSNVVEVFDKMRGLGYFPDSNVTALVLN 398



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALAWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ S   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-SRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I S  GK+  A  +F ++  +G E +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   +G  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDTAIHILAGSGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYSNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +   +VY EM+++G
Sbjct: 379 DKMRGLGYFPDSNVTALVLNAYGKLHEFDKANNVYIEMQDEG 420



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 36/222 (16%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +STLI  +G  G FD  L   ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALAWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             +  +G SP+   Y +++  +G+A+   +  S+  EM+  G                  
Sbjct: 68  SRLKRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAG------------------ 109

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
                               P++ ++S+++T+     K  EA  +F EM E     +L  
Sbjct: 110 ------------------VMPNTVSYSTLLTMYVENKKFLEALTVFAEMREIKCLLDLTT 151

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
              +I  YG+     +  +    + ++GI P+      LL V
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRV 193



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
           +  LSP+  TY++L+  +G+    +  L+  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALAWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRS-GFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTL 120

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALTVFAEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 58/130 (44%), Gaps = 1/130 (0%)

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           +E+ +      Y+TL+      G  D A    + M+  +    D   +S++I +      
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALAWLQKMEQ-DRVPGDLVLYSNLIELSRKLCD 59

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            S+A ++F+ +  +GF P+L    ++I  +GKA+   +    ++ +   G+ P+      
Sbjct: 60  YSKAISIFSRLKRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYST 119

Query: 487 LLNVMTQTPK 496
           LL +  +  K
Sbjct: 120 LLTMYVENKK 129


>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 829

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 167/347 (48%), Gaps = 9/347 (2%)

Query: 165 VILYNVTMKVFRKC-RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++ YNV + V+ K  R  D+   L D+M  +G++ D  T ST+IS      + ++A ++ 
Sbjct: 250 LVTYNVMLDVYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFL 309

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             +   G  P  +TY+SM+  +G+AG    A  +     +     D   ++ L   Y  A
Sbjct: 310 AELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRA 369

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D  + V + M + GV PN ITY  ++D  G+A R      ++  M D G +PN  TY
Sbjct: 370 GFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTY 429

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S+L   G+    ED + V  EMK  G   +   +NT+LA+C++ G  +   ++  +MK 
Sbjct: 430 NSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMK- 488

Query: 404 SENC--QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             NC  +PD  TF+++I+  +  G   ++  M+ EM+++GF P +    +L+    +   
Sbjct: 489 --NCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGD 546

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 508
                  +  +   G  P++     LL+  ++       K +E VEK
Sbjct: 547 WKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNV---KGIEKVEK 590



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 153/346 (44%), Gaps = 37/346 (10%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
           A +LFD +       D   ++T++          +A++ F +M   G DP  +TY+ M+D
Sbjct: 199 ASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLD 258

Query: 244 AYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            YG+ G   +    L D  R++   +D    ST+I   G  G  D       E+K  G K
Sbjct: 259 VYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYK 318

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN---------------------------- 334
           P  +TYN++L   G+A    +  +I KEM DN                            
Sbjct: 319 PGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAV 378

Query: 335 -------GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
                  G+ PN  TY +++ AYG+A   +D L ++  MK+ G   +V  YN++LAM   
Sbjct: 379 IDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGK 438

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
              T++  ++  +MK +  C P+  T+++M+ +CS  GK +    +  EM   GFEP+  
Sbjct: 439 KSRTEDVIKVLCEMKLN-GCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKD 497

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
              +LI  Y +     D  +    + + G TP       LLN + +
Sbjct: 498 TFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAR 543



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 134/272 (49%), Gaps = 2/272 (0%)

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           M+   GR     +A  L+D    EK+ +D  A++T++  Y   G +   ++++ +MK IG
Sbjct: 186 MVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIG 245

Query: 301 VKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           + P ++TYN +LD  G+  R W ++  +  EM   GL  +  T ++++ A GR    ++ 
Sbjct: 246 LDPTLVTYNVMLDVYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEA 305

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
                E+K  G +     YN++L +    G   EA  I ++M+ + NC PDS T++ +  
Sbjct: 306 RKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDN-NCPPDSVTYNELAA 364

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                G + E  A+ + M   G  PN    T++I  YGKA R DD +R  + + +LG  P
Sbjct: 365 TYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAP 424

Query: 480 DDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 511
           +      +L ++ +  + E    V C  K N 
Sbjct: 425 NVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNG 456



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 147/350 (42%), Gaps = 41/350 (11%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN     + +   LD+   + D M  +GV P+ +T++T+I         + A+  F  
Sbjct: 357 VTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSL 416

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   GC P+  TY+S++   G+            ++R E                     
Sbjct: 417 MKDLGCAPNVYTYNSVLAMLGK------------KSRTED-------------------- 444

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               + V  EMK  G  PN  T+N +L       +   V  + +EM + G  P+ +T+ +
Sbjct: 445 ---VIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNT 501

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ AY R     D+  +Y EM + G    VT YN LL   A  G    A  + +DM+ ++
Sbjct: 502 LISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMR-TK 560

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +P+  ++S ++   S  G V   E +  E+ +    P+  +L +L+    K +    +
Sbjct: 561 GFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGM 620

Query: 466 VRALNRLPELGITPDDRFCGCLL-----NVMTQTPKEELGKLVECVEKSN 510
            RA ++L + G  PD      +L     N M    +E L  + EC  + N
Sbjct: 621 ERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPN 670



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 140/316 (44%), Gaps = 11/316 (3%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I Y   +  + K    D A RLF  M D G  P+  T++++++     +     ++    
Sbjct: 392 ITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCE 451

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   GC P+  T+++M+      G       +    +N  +  D + F+TLI  Y   G+
Sbjct: 452 MKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGS 511

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 +Y EM   G  P + TYN LL+ + R       +++ ++M   G  PN N+Y+ 
Sbjct: 512 EVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSL 571

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM---CADVGYTDEAFEIFEDMK 402
           LL  Y +A   +    V +E+ +  +  S  L  TL+     C  +   + AF    D  
Sbjct: 572 LLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGMERAF----DQL 627

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKA 459
                +PD    +SM+++ +     S+A  M + + E G +PNLF    L+  Y   G+ 
Sbjct: 628 QKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGEC 687

Query: 460 QRTDDVVRAL-NRLPE 474
            + ++V++ + N  PE
Sbjct: 688 WKAEEVLKGIQNSGPE 703



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/417 (23%), Positives = 174/417 (41%), Gaps = 53/417 (12%)

Query: 102 LVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKA 161
           L  L  DL  C+       SVL  LG     +D + +L  M     A    T+ T  L  
Sbjct: 413 LFSLMKDL-GCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNT-MLAV 470

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAV 220
             E   +N   KV R             +M + G +PD  TF+TLIS  AR  +  + A 
Sbjct: 471 CSEEGKHNYVNKVLR-------------EMKNCGFEPDKDTFNTLISAYARCGSEVDSAK 517

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
            + E + S G  P   TY+++++A  R G+ + A  +    R + ++ + N++S L+  Y
Sbjct: 518 MYGEMVKS-GFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCY 576

Query: 281 GTAGNFDGCLNV-----------------------------------YEEMKAIGVKPNM 305
             AGN  G   V                                   +++++  G KP++
Sbjct: 577 SKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGYKPDL 636

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           +  N++L    R K   + + +   + + GL PN  TY  L+  Y R         V + 
Sbjct: 637 VVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGECWKAEEVLKG 696

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           ++  G +  V  YNT++      G   EA  +  +M +++  QP   T+++ ++  +   
Sbjct: 697 IQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEM-TTKGIQPTIVTYNTFLSGYAGME 755

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
              EA  +   M+E    P+      L+  Y KA + ++ +  ++++ EL I+ DD+
Sbjct: 756 LFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKYEEAMDFVSKIKELDISFDDQ 812



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 101/214 (47%), Gaps = 7/214 (3%)

Query: 273 FSTLIKLYGTAGNFDGCLNVYE-EMKAIGVKPNMITYNNLLDTM----GRAKRPWQVKTI 327
           F +L+K    +GN++  L ++E      G   N+   N +++ M    GR  +      +
Sbjct: 143 FPSLLKALDLSGNWERALLLFEWGWLHFGSDQNLRLDNQVVELMVRILGRESQHSIASKL 202

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           +  +     S +   Y ++L +Y R    +  + ++ +MKE G+  ++  YN +L +   
Sbjct: 203 FDLIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGK 262

Query: 388 VGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           +G + D   E+ ++M+S +  + D +T S++I+ C   G + EA     E+   G++P  
Sbjct: 263 MGRSWDRILELLDEMRS-KGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGT 321

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               S++Q +GKA    + +  L  + +    PD
Sbjct: 322 VTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPD 355


>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
 gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
          Length = 888

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 163/359 (45%), Gaps = 36/359 (10%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           +I Y   + ++ K   + KA  +  +M   G+K +N T+S LI+    +++  N A   F
Sbjct: 428 IISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFAN-AFSIF 486

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  PD   Y+ +++A+ + GN++ A  +++R + E+ +     F  +I+ +  A
Sbjct: 487 EDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVA 546

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+    L+  + M+  G  P ++TYN L+  + R  +  +  ++  +M+  G++PN +TY
Sbjct: 547 GDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTY 606

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++R Y  +         + ++KE G++L V +Y TLL  C   G    A  +  +M  
Sbjct: 607 TIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSF 666

Query: 404 SE--------NCQPDSW--------------------------TFSSMITICSCRGKVSE 429
            +        N   D W                          TF+S I  C   G +  
Sbjct: 667 QKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQR 726

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           AE +  EM + G +PN+   T+LI+ + K    D  ++    +   G+ PD+    CL+
Sbjct: 727 AENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLV 785



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 151/349 (43%), Gaps = 36/349 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           + + +  + K  D   A   F++M  RG++P+   F++L+    +      A+   E M 
Sbjct: 256 FGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMK 315

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S G +   +TYS +I  YG+  + E A  L+  A+ +   ++   +S +I  +  +GN D
Sbjct: 316 SEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMD 375

Query: 288 -----------------------------------GCLNVYEEMKAIGVKPNMITYNNLL 312
                                               CL V+E +K  G +P++I+Y  L+
Sbjct: 376 RAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLI 435

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           +   +  +  +   + KEM  +G+  N  TY+ L+  +       +  S++ +M + G+Q
Sbjct: 436 NLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQ 495

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
               +YN L+     +G  D A  IFE MK  E  QP + TF  +I   +  G +  A  
Sbjct: 496 PDRAIYNLLVEAFCKMGNMDRAIRIFERMK-KERMQPSNRTFRPIIEGFAVAGDMKRALD 554

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
             + M  +G  P +    +LI    +  + +  V  L+++   GI P++
Sbjct: 555 TLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNE 603



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 157/365 (43%), Gaps = 10/365 (2%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVL---RC 125
           K G  PK+            K   K+Y    N  + L    ++ S  ED + S L   R 
Sbjct: 440 KIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRA 499

Query: 126 LGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAE 185
           + +  +E  C      M N D A + +     K +       +   ++ F    D+ +A 
Sbjct: 500 IYNLLVEAFC-----KMGNMDRA-IRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRAL 553

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
              D M   G  P  +T++ LI      +   +AV   ++M   G  P+  TY+ ++  Y
Sbjct: 554 DTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGY 613

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
             +G++  AF  + + +    ++D   + TL++    +G     L V  EM    +  N 
Sbjct: 614 AASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT 673

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
             YN L+D   R    W+   + K+M ++G+ PN +T+ S + A  +A   +   +V +E
Sbjct: 674 FIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQE 733

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M + G++ +V  + TL+   A V   D A + FE+MKS+   +PD   +  ++T    R 
Sbjct: 734 MADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSA-GLKPDEAAYHCLVTSLLSRA 792

Query: 426 KVSEA 430
            V E 
Sbjct: 793 TVMEG 797



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 137/291 (47%), Gaps = 1/291 (0%)

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
            +R  KP    F  ++         + A   FE M + G +P+A  ++S++ AY  A ++
Sbjct: 245 FERIPKPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDM 304

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
             A    +  ++E   +    +S LI  YG   + +    +++E K      N I Y+N+
Sbjct: 305 RGALSCVEEMKSEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNI 364

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +    ++    + + + +EM ++G+    + Y S++  Y  A+  +  L V+  +KE G 
Sbjct: 365 IHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGF 424

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
           + S+  Y  L+ +   +G   +A  + ++M+ S   + ++ T+S +I         + A 
Sbjct: 425 RPSIISYGCLINLYVKIGKVPKALAVSKEME-SHGIKHNNKTYSMLINGFIHLHDFANAF 483

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           ++F +M+++G +P+  +   L++ + K    D  +R   R+ +  + P +R
Sbjct: 484 SIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNR 534



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 168/383 (43%), Gaps = 6/383 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y++ +  + K  D + A++LF +   +    + + +S +I     +   ++A E   
Sbjct: 323 VVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVR 382

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G D     Y SM+  Y  A + +    +++R +   +R    ++  LI LY   G
Sbjct: 383 EMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIG 442

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                L V +EM++ G+K N  TY+ L++            +I+++M  +GL P+   Y 
Sbjct: 443 KVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYN 502

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L+ A+ +    +  + ++  MK++ MQ S   +  ++   A  G    A +  + M+ S
Sbjct: 503 LLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRS 562

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
             C P   T++++I     + +V  A ++ ++M  AG  PN    T +++ Y  +     
Sbjct: 563 -GCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGK 621

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL---GYVVKLLL 521
                 ++ E G+  D      LL    ++ + +   L    E S  K+    ++  +L+
Sbjct: 622 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQ-SALAVTREMSFQKIPRNTFIYNILI 680

Query: 522 EEQDIEGDFKKEATELFNSISKD 544
           +     GD   EA +L   + +D
Sbjct: 681 DGWARRGDV-WEAADLMKQMKED 702


>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 166/342 (48%), Gaps = 6/342 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + I Y+  +  F K    D A RLFD+M + G+ P    ++T+++     N    A+ 
Sbjct: 227 SPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALR 286

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             E M   GC P   TY+ +I   G+ G V+ A+ L+     +  + D    + LI + G
Sbjct: 287 LVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILG 346

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI-YKEMTDNGLSPNW 340
            AG  +  L ++ +M ++   PN++TYN ++  +  +K P     + +++M  NG++P+ 
Sbjct: 347 RAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSS 406

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TYA L+  + +    E  L +  EM EKG       Y +L+         + A E+F++
Sbjct: 407 FTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQE 466

Query: 401 MKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +K  ENC +  +  ++ MI      G++S+A  +F E  + G  P+++   +L+    +A
Sbjct: 467 LK--ENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRA 524

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT--PKEEL 499
              D+    +  + E G TPD +    +LN + +T  PK  +
Sbjct: 525 GMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAI 566



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 139/305 (45%), Gaps = 3/305 (0%)

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG- 230
           +K+  K + ++KA  +F  +  R   P    ++TLI          K  E +  + S G 
Sbjct: 166 LKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGN 225

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           C PD +TYS++I A+G+    + AF L+D  +          ++T++ +Y      +  L
Sbjct: 226 CSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAAL 285

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            + EEMK  G  P + TY  L+  +G+  R     +++  M  +G  P+     +L+   
Sbjct: 286 RLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINIL 345

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQP 409
           GRA   ED L ++ +M       +V  YNT++ A+        EA   FE MK++    P
Sbjct: 346 GRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKAN-GIAP 404

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
            S+T++ +I       +V +A  +  EM E GF P      SLI   G+A+R +      
Sbjct: 405 SSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELF 464

Query: 470 NRLPE 474
             L E
Sbjct: 465 QELKE 469



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 147/312 (47%), Gaps = 4/312 (1%)

Query: 151 ALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A + F N LK     +V+L N  + +  +   L+ A +LF  M      P+ VT++T+I 
Sbjct: 319 AYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIK 378

Query: 209 CARMNNLP-NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
               +  P ++A  WFE+M + G  P + TY+ +ID + +   VE A  L +    + + 
Sbjct: 379 AIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFP 438

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
             P A+ +LI   G A  ++    +++E+K    + +   Y  ++   G   R      +
Sbjct: 439 PCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDL 498

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           + E    G SP+  TY +L+    RA   ++  S+ R M+E G    +  +N +L   A 
Sbjct: 499 FCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAK 558

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G    A E+F  MK SE   PD+ +++++++  S  G    A  +  EM   GFE +  
Sbjct: 559 TGGPKRAIEMFTKMKESE-IMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSI 617

Query: 448 VLTSLIQCYGKA 459
             +S+++  GK 
Sbjct: 618 TYSSILEAVGKV 629



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 149/320 (46%), Gaps = 12/320 (3%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAA------LALTYFTNKLKASKEVILYNV 170
           DD +S+   +  D  + D V+++NN+ N    A      L L    + L+ +  V+ YN 
Sbjct: 317 DDAYSLFFNMLKDGCKPD-VVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNT 375

Query: 171 TMK-VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
            +K +F       +A   F+ M   G+ P + T++ LI      N   KA+   E M   
Sbjct: 376 VIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEK 435

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
           G  P    Y S+ID+ GRA   E A  L+   +    R     ++ +IK +G  G     
Sbjct: 436 GFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDA 495

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           ++++ E + +G  P++ TYN L+  M RA    +  ++ + M +NG +P+  ++  +L  
Sbjct: 496 VDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNG 555

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
             +    +  + ++ +MKE  +      YNT+L+  +  G  + A ++  +MK  +  + 
Sbjct: 556 LAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMK-LKGFEY 614

Query: 410 DSWTFSSMITICSCRGKVSE 429
           DS T+SS   I    GKV E
Sbjct: 615 DSITYSS---ILEAVGKVDE 631



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 131/301 (43%), Gaps = 3/301 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +D+  R   DM+          +S ++       + NKA+  F ++    C+P A  Y++
Sbjct: 140 VDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNT 199

Query: 241 MIDAYGRAGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           +I      G+ E    LY+   +E     D   +S LI  +G    +D    +++EMK  
Sbjct: 200 LILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKEN 259

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G+ P    Y  +L    +  +      + +EM   G +P   TY  L++  G+    +D 
Sbjct: 260 GLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDA 319

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI- 418
            S++  M + G +  V L N L+ +    G  ++A ++F  M S + C P+  T++++I 
Sbjct: 320 YSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQ-CAPNVVTYNTVIK 378

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
            I   +   SEA   F +M   G  P+ F    LI  + K  R +  +  L  + E G  
Sbjct: 379 AIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFP 438

Query: 479 P 479
           P
Sbjct: 439 P 439



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 146/332 (43%), Gaps = 20/332 (6%)

Query: 199 DNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
           D+ T+  LI C   + L ++     + M    C      +S ++   G+A  V  A  ++
Sbjct: 123 DSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVF 182

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGR 317
            + +  K       ++TLI +    G+ +    +Y E+ + G   P+ ITY+ L+   G+
Sbjct: 183 YQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGK 242

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
            +R      ++ EM +NGL P    Y ++L  Y +    E  L +  EMK KG   +V  
Sbjct: 243 LERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFT 302

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           Y  L+     VG  D+A+ +F +M   + C+PD    +++I I    G++ +A  +F +M
Sbjct: 303 YTELIKGLGKVGRVDDAYSLFFNM-LKDGCKPDVVLINNLINILGRAGRLEDALKLFGKM 361

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQR-TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
                 PN+    ++I+   +++    +      ++   GI P       L++   +T +
Sbjct: 362 DSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNR 421

Query: 497 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 528
                    VEK+         LLLEE D +G
Sbjct: 422 ---------VEKA--------LLLLEEMDEKG 436


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 188/379 (49%), Gaps = 10/379 (2%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+LN         LAL      +K   E  ++  +  +  +   + + +A  L D M++ 
Sbjct: 121 ILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEM 180

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G KPD VTF+TLI    ++N  ++AV   +RM + GC PD  TY ++++   + G++++A
Sbjct: 181 GYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 240

Query: 255 FGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
             L  +   EK +I+ N   ++T+I       + D   +++ +M+  G+KP++ TYN+L+
Sbjct: 241 LSLLKKM--EKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLI 298

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
             +    R      +  +M +  ++PN  T+ SL+ A+ +     +   ++ EM ++ + 
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID 358

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAE 431
            ++  YN+L+         DEA +IF  M  S++C PD  T++++I   C  + +V E  
Sbjct: 359 PNIVTYNSLINGFCMHDRLDEAQQIFTLM-VSKDCLPDVVTYNTLIKGFCKAK-RVEEGM 416

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            +F EM + G   N     +LIQ   +A   D   +   ++   G+ PD      LL+ +
Sbjct: 417 ELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 476

Query: 492 TQTPKEELGKLV-ECVEKS 509
            +  K E   +V E ++KS
Sbjct: 477 CKYGKLEKALVVFEYLQKS 495



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 165/340 (48%), Gaps = 8/340 (2%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL+L     K K    V++YN  +    K + +D A  LF+ M  +G+KPD  T+++LIS
Sbjct: 240 ALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLIS 299

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           C       + A      M     +P+ +T++S+IDA+ + G +  A  L+D        I
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRS--I 357

Query: 269 DPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           DPN   +++LI  +      D    ++  M +    P+++TYN L+    +AKR  +   
Sbjct: 358 DPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGME 417

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +++EM+  GL  N  TY +L++   +A   +    ++++M   G+   +  Y+ LL    
Sbjct: 418 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 477

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G  ++A  +FE ++ S+  +P+ +T++ MI      GKV +   +F  +   G +PN+
Sbjct: 478 KYGKLEKALVVFEYLQKSK-MEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV 536

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            + T++I  + +    ++       + E G  PD    GC
Sbjct: 537 IIYTTMISGFCRKGLKEEADALFREMKEDGTLPDS---GC 573



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 147/301 (48%), Gaps = 3/301 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           LD A  LF +M+     P  + FS L+S  A+MN   +  +   E+M + G   +  TYS
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKF-DVVISLGEQMQNLGIPHNHYTYS 120

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +++ + R   + +A  +  +     +  D    S+L+  Y         + + ++M  +
Sbjct: 121 ILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEM 180

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G KP+ +T+N L+  +    +  +   +   M   G  P+  TY +++    +    +  
Sbjct: 181 GYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 240

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           LS+ ++M++  ++ +V +YNT++       + D+AF++F  M+ ++  +PD +T++S+I+
Sbjct: 241 LSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKME-TKGIKPDVFTYNSLIS 299

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                G+ S+A  + ++M+E    PN+    SLI  + K  +  +  +  + + +  I P
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 359

Query: 480 D 480
           +
Sbjct: 360 N 360



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +K F K + +++   LF +M  RG+  + VT++TLI         + A + F
Sbjct: 395 DVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 454

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT- 282
           ++M S G  PD +TYS ++D   + G +E A  +++    +K +++PN ++  I + G  
Sbjct: 455 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL--QKSKMEPNIYTYNIMIEGMC 512

Query: 283 -AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AG  +   +++  +   GVKPN+I Y  ++    R     +   +++EM ++G  P+  
Sbjct: 513 KAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSG 572

Query: 342 TYASLLRAYGRARYGEDTLS--VYREMKEKGMQLSVTLYNTLLAMCAD 387
            Y +L+RA  R R G+   S  + +EM+  G     +  + ++ M  D
Sbjct: 573 CYNTLIRA--RLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHD 618



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 126/256 (49%), Gaps = 1/256 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ YN  +  F     LD+A+++F  M+ +   PD VT++TLI          + +E F 
Sbjct: 361 IVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFR 420

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G   + +TY+++I    +AG+ +MA  ++ +  ++    D   +S L+      G
Sbjct: 421 EMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYG 480

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +  L V+E ++   ++PN+ TYN +++ M +A +      ++  ++  G+ PN   Y 
Sbjct: 481 KLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYT 540

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +++  + R    E+  +++REMKE G       YNTL+      G    + E+ ++M+S 
Sbjct: 541 TMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSC 600

Query: 405 ENCQPDSWTFSSMITI 420
                D+ T S +I +
Sbjct: 601 -GFVGDASTISMVINM 615



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL +  +  K K    +  YN+ ++   K   ++    LF  +  +GVKP+ + ++T+IS
Sbjct: 485 ALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMIS 544

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 L  +A   F  M   G  PD+  Y+++I A  R G+   +  L    R+  +  
Sbjct: 545 GFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVG 604

Query: 269 DPNAFSTLIKL 279
           D +  S +I +
Sbjct: 605 DASTISMVINM 615


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 166/343 (48%), Gaps = 5/343 (1%)

Query: 142 MTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD 199
           M+   TA  A  ++   L A    E  L+NV M+   +  +L  A+ +FD+M  RGV+  
Sbjct: 91  MSRFPTAPEACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRT 150

Query: 200 NVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
            V+F+T+IS   R  +L + A     RM   G  PD  TY ++I    R G +E A G++
Sbjct: 151 VVSFNTMISGMCRAGDL-DGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVF 209

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
           ++      + +   F+ LI  +   G+ +  L ++ EM+  GV+P+ +TYN +++ + RA
Sbjct: 210 EKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRA 269

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
           +       I  EM   GL P+  TY +L+  Y +    +  + + + M  +G+ L    Y
Sbjct: 270 RDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTY 329

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
             L++  +  G + +A  +  +M  +   +PD+ T++ +I     +G V     +  EM 
Sbjct: 330 TALISGLSKAGRSADAERVLGEMMEA-GLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQ 388

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
             G +P +     ++  + K  +  +    LN +  +G++PDD
Sbjct: 389 NKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDD 431



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 137/293 (46%), Gaps = 4/293 (1%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
            + +V  Y   ++   +   ++ A  +F+ M  RG+KP+ V F+ LI            +
Sbjct: 182 VTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETML 241

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E    M   G  PDA+TY+++++   RA +++ A G+    R+   R D   ++TLI  Y
Sbjct: 242 ELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGY 301

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
                 D  + + + M A GV  + +TY  L+  + +A R    + +  EM + GL P+ 
Sbjct: 302 CKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDN 361

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY  ++ A+ R    +  L + +EM+ KG +  V  YN ++     +G    A  +   
Sbjct: 362 TTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNA 421

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           M +     PD  T++ ++      GKV++ E + +     G  P+L V TS++
Sbjct: 422 MINI-GVSPDDITYNILLDGHCKHGKVTDIEELKS---AKGTVPDLGVYTSIV 470


>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 448

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 153/296 (51%), Gaps = 1/296 (0%)

Query: 199 DNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
           D  T++T+IS    +    KA+E    M   G   +  TYS++++   +A  +E+A  +Y
Sbjct: 72  DVYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVY 131

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
            +   E    +   ++ LI ++G  GN+   + V + ++  G KP + TYN +L    R+
Sbjct: 132 GQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRS 191

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
            +P     +Y+ M  +G  P   TY +L+ AYG+    E+ L ++++M  +G + +V  Y
Sbjct: 192 GQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITY 251

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           ++L++ C   G    A E+ ++M   +NC+P++ TF+++++ C+  G+   A+ +F +M 
Sbjct: 252 SSLISACEKAGRWQLALELLDEMH-RDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMP 310

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
             G +P+      LI  + +  +    ++AL+ +   G  PD      ++  +T++
Sbjct: 311 SCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYNVVIEALTRS 366



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 2/150 (1%)

Query: 151 ALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL  F + ++    + VI Y+  +    K      A  L D+M     KP+ VTF+ L+S
Sbjct: 232 ALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLS 291

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                     A + FE+MPS GC PDA++Y+ +I A+ R      A    D  + +  R 
Sbjct: 292 ACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRP 351

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           D   ++ +I+    +G     L   +  +A
Sbjct: 352 DVGVYNVVIEALTRSGVLSAQLKAAQIFQA 381



 Score = 46.2 bits (108), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 1/124 (0%)

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           V  Y T+++ C       +A E+  +M+       +  T+S+++ +C    ++  A  ++
Sbjct: 73  VYTYTTIISQCGSHQQLRKALELVAEMRG-HGVVCNVHTYSALMNVCIKANELELALDVY 131

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
            ++L  G  PNL     LI  +GK     + V+ L+ L + G  P+ R    +L+   ++
Sbjct: 132 GQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRS 191

Query: 495 PKEE 498
            + E
Sbjct: 192 GQPE 195


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 160/333 (48%), Gaps = 4/333 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + Y+  +  F K    D A  LFD+M + G+ P    ++T++          KA+   
Sbjct: 229 DTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLV 288

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   GC     TY+ +I   G+AG VE A+ ++     E  + D    + LI L G A
Sbjct: 289 QEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKA 348

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNT 342
           G     + ++EEM+++   PN++TYN ++  +  +K R  +    Y++M +NG+ P+  T
Sbjct: 349 GRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFT 408

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y+ L+  + +    E  L +  EM EKG       Y +L+         + A E+F++++
Sbjct: 409 YSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELR 468

Query: 403 SSENCQPDSW-TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             ENC   S   ++ MI      G++SEA  +FNEM + G  P+++   +L+    +   
Sbjct: 469 --ENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGM 526

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           TD+    L  + E G TPD      +LN   +T
Sbjct: 527 TDEAHSLLRTMEENGCTPDLNSHNIILNGFART 559



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 151/315 (47%), Gaps = 12/315 (3%)

Query: 151 ALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI- 207
           A + F N LK     +V+L N  + +  K   L  A +LF++M      P+ VT++T+I 
Sbjct: 319 AYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIK 378

Query: 208 ----SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
               S AR     ++A  W+E+M   G  P + TYS +ID + +   VE A  L +    
Sbjct: 379 ALFESKAR----ASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDE 434

Query: 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
           + +   P A+ +LI   G A  ++    +++E++      +   Y  ++  +G+  R  +
Sbjct: 435 KGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSE 494

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
              ++ EM   G +P+   Y +L+    R    ++  S+ R M+E G    +  +N +L 
Sbjct: 495 AVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILN 554

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
             A  G    A E+F  MK+S+  +PD  ++++++   S  G   EA  +  EM   GFE
Sbjct: 555 GFARTGGPKGAIEMFTRMKNSK-IKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFE 613

Query: 444 PNLFVLTSLIQCYGK 458
            +L   +S+++  GK
Sbjct: 614 YDLITYSSILEAVGK 628



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 133/261 (50%), Gaps = 4/261 (1%)

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           +W  +  +F  + D+ TY ++I     AG +   +            I P   S ++K+ 
Sbjct: 112 KWAGKRRNF--EHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVL 169

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPN 339
           G A   +  L+++ ++K    KP   TYN+++  + +     +V  +Y EM + G   P+
Sbjct: 170 GKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPD 229

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY++L+ A+G+    +  +S++ EMKE G+  +  +Y T+L +   +G  ++A  + +
Sbjct: 230 TVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQ 289

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +MK  + C    +T++ +I      GKV EA ++F  ML+ G +P++ ++ +LI   GKA
Sbjct: 290 EMK-EKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKA 348

Query: 460 QRTDDVVRALNRLPELGITPD 480
            R  D ++    +  L  TP+
Sbjct: 349 GRLADAIKLFEEMESLQCTPN 369



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 146/311 (46%), Gaps = 14/311 (4%)

Query: 129 DFLEQDC---VIILNNMTN----PDTAALALTYF--TNKLKASKEVILYNVTMK-VFRKC 178
           + L++ C   V+++NN+ N        A A+  F     L+ +  V+ YN  +K +F   
Sbjct: 325 NMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESK 384

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTY 238
               +A   ++ M + GV P + T+S LI      N   KA+   E M   G  P    Y
Sbjct: 385 ARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAY 444

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
            S+I+A G+A   E A  L+   R          ++ +IK  G  G     ++++ EMK 
Sbjct: 445 CSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKK 504

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
           +G  P++  YN L+  M R     +  ++ + M +NG +P+ N++  +L  + R    + 
Sbjct: 505 LGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKG 564

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            + ++  MK   ++  V  YNT+L   +  G  +EA ++ ++M +S+  + D  T+SS  
Sbjct: 565 AIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEM-NSKGFEYDLITYSS-- 621

Query: 419 TICSCRGKVSE 429
            I    GK+ E
Sbjct: 622 -ILEAVGKIDE 631



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 150/337 (44%), Gaps = 20/337 (5%)

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           R  + D+ T+  LI C     +  +  +  + M    C       S ++   G+A  V  
Sbjct: 118 RNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNK 177

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLL 312
           A  ++ + +  K +   N ++++I +    G+ +    +Y EM   G   P+ +TY+ L+
Sbjct: 178 ALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALI 237

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
              G+  R     +++ EM +NGL P    Y ++L  Y +    E  L + +EMKEKG  
Sbjct: 238 AAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCA 297

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
           L+V  Y  L+      G  +EA+ IF +M   E C+PD    +++I +    G++++A  
Sbjct: 298 LTVYTYTELIKGVGKAGKVEEAYSIFMNM-LKEGCKPDVVLINNLINLLGKAGRLADAIK 356

Query: 433 MFNEMLEAGFEPNLFVLTSLIQC-YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
           +F EM      PN+    ++I+  +    R  +      ++ E G+ P       L++  
Sbjct: 357 LFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGF 416

Query: 492 TQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 528
            +T +         VEK+         LLLEE D +G
Sbjct: 417 CKTNR---------VEKA--------LLLLEEMDEKG 436



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 143/317 (45%), Gaps = 2/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  Y   +K   K   +++A  +F +ML  G KPD V  + LI+          A++ FE
Sbjct: 300 VYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFE 359

Query: 225 RMPSFGCDPDALTYSSMIDA-YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            M S  C P+ +TY+++I A +        AF  Y++ +          +S LI  +   
Sbjct: 360 EMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKT 419

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              +  L + EEM   G  P    Y +L++ +G+AKR      +++E+ +N    +   Y
Sbjct: 420 NRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVY 479

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           A +++  G+     + + ++ EMK+ G    V  YN L++    VG TDEA  +   M+ 
Sbjct: 480 AVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEE 539

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +  C PD  + + ++   +  G    A  MF  M  +  +P++    +++ C  +A   +
Sbjct: 540 N-GCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFE 598

Query: 464 DVVRALNRLPELGITPD 480
           +  + +  +   G   D
Sbjct: 599 EAAKLMKEMNSKGFEYD 615


>gi|7529747|emb|CAB86932.1| putative protein [Arabidopsis thaliana]
 gi|24030379|gb|AAN41351.1| unknown protein [Arabidopsis thaliana]
          Length = 526

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 157/318 (49%), Gaps = 7/318 (2%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           + K  + + AER+   +   G  P+ ++++ L+         N A   F RM S G +P 
Sbjct: 92  YGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPS 151

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEK---WRIDPNAFSTLIKLYGTAGNFDGCLN 291
           A+TY  ++  +      + A  +++   +EK    + D   +  +I +Y  AGN++    
Sbjct: 152 AITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARK 211

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           V+  M   GV  + +TYN+L+      K   +V  IY +M  + + P+  +YA L++AYG
Sbjct: 212 VFSSMVGKGVPQSTVTYNSLMSFETSYK---EVSKIYDQMQRSDIQPDVVSYALLIKAYG 268

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           RAR  E+ LSV+ EM + G++ +   YN LL   A  G  ++A  +F+ M+  +   PD 
Sbjct: 269 RARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRR-DRIFPDL 327

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
           W++++M++       +  AE  F  +   GFEPN+    +LI+ Y KA   + ++    +
Sbjct: 328 WSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEK 387

Query: 472 LPELGITPDDRFCGCLLN 489
           +   GI  +      +++
Sbjct: 388 MRLSGIKANQTILTTIMD 405



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 145/305 (47%), Gaps = 15/305 (4%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVI-----LYNVTMKVFRKCRDLDKAERLFDDM 191
           IIL      D    A   F   L   K  +     +Y++ + +++K  + +KA ++F  M
Sbjct: 157 IILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSM 216

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
           + +GV    VT+++L+S        +K    +++M      PD ++Y+ +I AYGRA   
Sbjct: 217 VGKGVPQSTVTYNSLMSFETSYKEVSKI---YDQMQRSDIQPDVVSYALLIKAYGRARRE 273

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           E A  +++   +   R    A++ L+  +  +G  +    V++ M+   + P++ +Y  +
Sbjct: 274 EEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTM 333

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           L     A      +  +K +  +G  PN  TY +L++ Y +A   E  + VY +M+  G+
Sbjct: 334 LSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGI 393

Query: 372 QLSVTLYNTLL---AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
           + + T+  T++     C + G    A   +++M+S     PD    + ++++ S + ++ 
Sbjct: 394 KANQTILTTIMDASGRCKNFG---SALGWYKEMESC-GVPPDQKAKNVLLSLASTQDELE 449

Query: 429 EAEAM 433
           EA+ +
Sbjct: 450 EAKEL 454



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 152/366 (41%), Gaps = 44/366 (12%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRG---VKPDNVTFSTLISCARMNNLPNKAVEW 222
           I Y + +K F +     +AE +F+ +LD     +KPD   +  +I   +      KA + 
Sbjct: 153 ITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKV 212

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F  M   G     +TY+S++        V     +YD+ +    + D  +++ LIK YG 
Sbjct: 213 FSSMVGKGVPQSTVTYNSLMSFETSYKEVSK---IYDQMQRSDIQPDVVSYALLIKAYGR 269

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           A   +  L+V+EEM   GV+P    YN LLD    +    Q KT++K M  + + P+  +
Sbjct: 270 ARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWS 329

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y ++L AY  A   E     ++ +K  G + ++  Y TL+   A     ++  E++E M+
Sbjct: 330 YTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMR 389

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            S                                    G + N  +LT+++   G+ +  
Sbjct: 390 LS------------------------------------GIKANQTILTTIMDASGRCKNF 413

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLE 522
              +     +   G+ PD +    LL++   + ++EL +  E     N     + ++   
Sbjct: 414 GSALGWYKEMESCGVPPDQKAKNVLLSL--ASTQDELEEAKELTGIRNETATIIARVYGS 471

Query: 523 EQDIEG 528
           + D EG
Sbjct: 472 DDDEEG 477



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 115/241 (47%), Gaps = 7/241 (2%)

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           W      F  LI  YG  GNF+G   V   +  +G  PN+I+Y  L+++ GR  +    +
Sbjct: 78  WNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAE 137

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
            I++ M  +G  P+  TY  +L+ +    + +  E+      + K+  ++    +Y+ ++
Sbjct: 138 AIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMI 197

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            M    G  ++A ++F  M   +     + T++S+++  +   +VS+   ++++M  +  
Sbjct: 198 YMYKKAGNYEKARKVFSSM-VGKGVPQSTVTYNSLMSFETSYKEVSK---IYDQMQRSDI 253

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 502
           +P++     LI+ YG+A+R ++ +     + + G+ P  +    LL+    +   E  K 
Sbjct: 254 QPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKT 313

Query: 503 V 503
           V
Sbjct: 314 V 314


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 160/333 (48%), Gaps = 4/333 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + Y+  +  F K    D A  LFD+M + G+ P    ++T++          KA+   
Sbjct: 229 DTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLV 288

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   GC     TY+ +I   G+AG VE A+ ++     E  + D    + LI L G A
Sbjct: 289 QEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKA 348

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNT 342
           G     + ++EEM+++   PN++TYN ++  +  +K R  +    Y++M +NG+ P+  T
Sbjct: 349 GRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFT 408

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y+ L+  + +    E  L +  EM EKG       Y +L+         + A E+F++++
Sbjct: 409 YSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELR 468

Query: 403 SSENCQPDSW-TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             ENC   S   ++ MI      G++SEA  +FNEM + G  P+++   +L+    +   
Sbjct: 469 --ENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGM 526

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           TD+    L  + E G TPD      +LN   +T
Sbjct: 527 TDEAHSLLRTMEENGCTPDLNSHNIILNGFART 559



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 151/315 (47%), Gaps = 12/315 (3%)

Query: 151 ALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI- 207
           A + F N LK     +V+L N  + +  K   L  A +LF++M      P+ VT++T+I 
Sbjct: 319 AYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIK 378

Query: 208 ----SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
               S AR     ++A  W+E+M   G  P + TYS +ID + +   VE A  L +    
Sbjct: 379 ALFESKAR----ASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDE 434

Query: 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
           + +   P A+ +LI   G A  ++    +++E++      +   Y  ++  +G+  R  +
Sbjct: 435 KGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSE 494

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
              ++ EM   G +P+   Y +L+    R    ++  S+ R M+E G    +  +N +L 
Sbjct: 495 AVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILN 554

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
             A  G    A E+F  MK+S+  +PD  ++++++   S  G   EA  +  EM   GFE
Sbjct: 555 GFARTGGPKGAIEMFTRMKNSK-IKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFE 613

Query: 444 PNLFVLTSLIQCYGK 458
            +L   +S+++  GK
Sbjct: 614 YDLITYSSILEAVGK 628



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 133/261 (50%), Gaps = 4/261 (1%)

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           +W  +  +F  + D+ TY ++I     AG +   +            I P   S ++K+ 
Sbjct: 112 KWAGKRRNF--EHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVL 169

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPN 339
           G A   +  L+++ ++K    KP   TYN+++  + +     +V  +Y EM + G   P+
Sbjct: 170 GKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPD 229

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY++L+ A+G+    +  +S++ EMKE G+  +  +Y T+L +   +G  ++A  + +
Sbjct: 230 TVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQ 289

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +MK  + C    +T++ +I      GKV EA ++F  ML+ G +P++ ++ +LI   GKA
Sbjct: 290 EMK-EKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKA 348

Query: 460 QRTDDVVRALNRLPELGITPD 480
            R  D ++    +  L  TP+
Sbjct: 349 GRLADAIKLFEEMESLQCTPN 369



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 146/311 (46%), Gaps = 14/311 (4%)

Query: 129 DFLEQDC---VIILNNMTN----PDTAALALTYF--TNKLKASKEVILYNVTMK-VFRKC 178
           + L++ C   V+++NN+ N        A A+  F     L+ +  V+ YN  +K +F   
Sbjct: 325 NMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESK 384

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTY 238
               +A   ++ M + GV P + T+S LI      N   KA+   E M   G  P    Y
Sbjct: 385 ARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAY 444

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
            S+I+A G+A   E A  L+   R          ++ +IK  G  G     ++++ EMK 
Sbjct: 445 CSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKK 504

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
           +G  P++  YN L+  M R     +  ++ + M +NG +P+ N++  +L  + R    + 
Sbjct: 505 LGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKG 564

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            + ++  MK   ++  V  YNT+L   +  G  +EA ++ ++M +S+  + D  T+SS  
Sbjct: 565 AIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEM-NSKGFEYDLITYSS-- 621

Query: 419 TICSCRGKVSE 429
            I    GK+ E
Sbjct: 622 -ILEAVGKIDE 631



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 150/337 (44%), Gaps = 20/337 (5%)

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           R  + D+ T+  LI C     +  +  +  + M    C       S ++   G+A  V  
Sbjct: 118 RNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNK 177

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLL 312
           A  ++ + +  K +   N ++++I +    G+ +    +Y EM   G   P+ +TY+ L+
Sbjct: 178 ALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALI 237

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
              G+  R     +++ EM +NGL P    Y ++L  Y +    E  L + +EMKEKG  
Sbjct: 238 AAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCA 297

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
           L+V  Y  L+      G  +EA+ IF +M   E C+PD    +++I +    G++++A  
Sbjct: 298 LTVYTYTELIKGVGKAGKVEEAYSIFMNM-LKEGCKPDVVLINNLINLLGKAGRLADAIK 356

Query: 433 MFNEMLEAGFEPNLFVLTSLIQC-YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
           +F EM      PN+    ++I+  +    R  +      ++ E G+ P       L++  
Sbjct: 357 LFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGF 416

Query: 492 TQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 528
            +T +         VEK+         LLLEE D +G
Sbjct: 417 CKTNR---------VEKA--------LLLLEEMDEKG 436



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 148/333 (44%), Gaps = 2/333 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L     +   +  V  Y   +K   K   +++A  +F +ML  G KPD V  + LI+
Sbjct: 284 ALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLIN 343

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA-YGRAGNVEMAFGLYDRARNEKWR 267
                     A++ FE M S  C P+ +TY+++I A +        AF  Y++ +     
Sbjct: 344 LLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVV 403

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                +S LI  +      +  L + EEM   G  P    Y +L++ +G+AKR      +
Sbjct: 404 PSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANEL 463

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           ++E+ +N    +   YA +++  G+     + + ++ EMK+ G    V  YN L++    
Sbjct: 464 FQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVR 523

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           VG TDEA  +   M+ +  C PD  + + ++   +  G    A  MF  M  +  +P++ 
Sbjct: 524 VGMTDEAHSLLRTMEEN-GCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVV 582

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              +++ C  +A   ++  + +  +   G   D
Sbjct: 583 SYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYD 615


>gi|255661210|gb|ACU25774.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 426

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 174/343 (50%), Gaps = 11/343 (3%)

Query: 151 ALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A++ F+   +A  + +++ YN  + VF K +   +A  L  +M + GV PD V++STL++
Sbjct: 63  AISIFSRLKRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLT 122

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               N    +A+  F  M    C  D  T + MID YG+    + A  L+   R  K  I
Sbjct: 123 MYVENQKFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMR--KVGI 180

Query: 269 DPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           +PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN ++   G+     +   
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANN 240

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++    
Sbjct: 241 LIQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYE 300

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG   ++
Sbjct: 301 RAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDI 355

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
            V   +I  + K ++  +VV    ++  LG  PD      +LN
Sbjct: 356 TVFERMIDLFSKYKKYPNVVEVFEKMRGLGYFPDSNVISLVLN 398



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 148/305 (48%), Gaps = 10/305 (3%)

Query: 185 ERLFDDML--------DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           E LFDD L        DR V  D V +S LI  +R     +KA+  F R+   G  PD +
Sbjct: 22  EGLFDDALSWLQKMEQDR-VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRAGITPDLV 80

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            Y+SMI+ +G+A     A  L    R      D  ++STL+ +Y     F   L+V+ EM
Sbjct: 81  AYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVENQKFLEALSVFAEM 140

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           + I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LLR YG A   
Sbjct: 141 REIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYNTLLRVYGDAELF 200

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            + + ++R M+ K ++ +V  YNT++ +       ++A  + ++M  +   +P++ T+S+
Sbjct: 201 GEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEM-HNRGIEPNAITYST 259

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R L+ L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHAKRLLHELKRPD 319

Query: 477 ITPDD 481
             P D
Sbjct: 320 NIPRD 324



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 36/222 (16%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             +   G++P+   Y S++  +G+A+   +  S+  EM+E G                  
Sbjct: 68  SRLKRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAG------------------ 109

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
                               PD+ ++S+++T+     K  EA ++F EM E     +L  
Sbjct: 110 ------------------VVPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCLVDLTT 151

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
              +I  YG+     +  +    + ++GI P+      LL V
Sbjct: 152 CNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYNTLLRV 193



 Score = 47.4 bits (111), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 20/187 (10%)

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           +E+ +      Y+TL+      G  D+A    + M+  +    D   +S++I +      
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQ-DRVPGDLVLYSNLIELSRKLCD 59

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            S+A ++F+ +  AG  P+L    S+I  +GKA+   +    ++ + E G+ PD      
Sbjct: 60  YSKAISIFSRLKRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYST 119

Query: 487 LLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQ------DIEG--DFKKEATE 536
           LL +  +  K  E L    E  E         +K L++        D+ G  D  KEA +
Sbjct: 120 LLTMYVENQKFLEALSVFAEMRE---------IKCLVDLTTCNIMIDVYGQLDMAKEADK 170

Query: 537 LFNSISK 543
           LF S+ K
Sbjct: 171 LFWSMRK 177



 Score = 42.4 bits (98), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 46/232 (19%), Positives = 82/232 (35%), Gaps = 52/232 (22%)

Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEV--------------- 165
           ++LR  GD  L  + + +   M   D     +TY T  +   K +               
Sbjct: 189 TLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNR 248

Query: 166 ------ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI------------ 207
                 I Y+  + ++ K   LD+A  LF  +   GV+ D+V + T+I            
Sbjct: 249 GIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHA 308

Query: 208 -----SCARMNNLPN--------------KAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
                   R +N+P               +A   F +    G   D   +  MID + + 
Sbjct: 309 KRLLHELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIDLFSKY 368

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
                   ++++ R   +  D N  S ++  YG    FD   ++Y +M+  G
Sbjct: 369 KKYPNVVEVFEKMRGLGYFPDSNVISLVLNAYGKLHEFDXANDMYMDMQDEG 420


>gi|410110135|gb|AFV61147.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rotundifolia]
          Length = 440

 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 85  DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVF 144

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 145 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 202

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 203 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 262

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 263 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 322

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   N+ V   +I    K ++
Sbjct: 323 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKNIAVFERMIHLLSKYKK 377

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 378 YANVVEVFDKMRGLGYFPDSNVIAVVLN 405



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 151/330 (45%), Gaps = 36/330 (10%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LFD+M  R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 62

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           +  +   A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  
Sbjct: 63  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 122

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTD--------------------------------- 333
           +Y+ LL      K+  +  +++ EM +                                 
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 182

Query: 334 --NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       
Sbjct: 183 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 242

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  +
Sbjct: 243 EKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 301

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +I  Y +A       R L+ L      P D
Sbjct: 302 MIVAYERAGLVAHAKRLLHELKRPDNIPRD 331



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 113/235 (48%), Gaps = 4/235 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 210 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 269

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 270 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 325

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   N+  +  ++  + + K+   V  ++
Sbjct: 326 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKNIAVFERMIHLLSKYKKYANVVEVF 385

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
            +M   G  P+ N  A +L AYG+ +  +    VY EM+E G   S  ++  +L+
Sbjct: 386 DKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQEVGCVFSDEVHFQMLS 440



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 1/205 (0%)

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 2   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELS 61

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +     +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  + 
Sbjct: 62  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 121

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
           T Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 122 TSYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFW 180

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQ 460
            M + G EPN+    +L++ YG A+
Sbjct: 181 GMRKMGIEPNVVSYNTLLRVYGDAE 205



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 131/278 (47%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 160 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 219

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 220 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 277

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 278 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 336

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G   ++ ++  ++ + +         E+F+ M+    
Sbjct: 337 LAGAGRI---EEATYVFRQAIDAGEVKNIAVFERMIHLLSKYKKYANVVEVFDKMRGL-G 392

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   + +  + +  GK+ E   A  ++ EM E G
Sbjct: 393 YFPDS---NVIAVVLNAYGKLQEFDKANDVYMEMQEVG 427



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 81/167 (48%), Gaps = 1/167 (0%)

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           ++ EM    LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +  
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 62

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
            +    +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN 
Sbjct: 63  KLCDYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 121

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
              ++L+  Y + ++  + +   + + E+    D   C  +++V  Q
Sbjct: 122 TSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 168



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            ++ EM+++ +      Y+TL+      G  D A    + M+  +    D   +S++I +
Sbjct: 2   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQ-VPGDLVLYSNLIEL 60

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
                  S+A ++F+ +  +GF P+L    ++I  +GKA+   +    ++ +   G+ P+
Sbjct: 61  SRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPN 120

Query: 481 DRFCGCLLNVMTQTPK 496
                 LL +  +  K
Sbjct: 121 TTSYSTLLTMYVENKK 136


>gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 157/318 (49%), Gaps = 7/318 (2%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           + K  + + AER+   +   G  P+ ++++ L+         N A   F RM S G +P 
Sbjct: 156 YGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPS 215

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEK---WRIDPNAFSTLIKLYGTAGNFDGCLN 291
           A+TY  ++  +      + A  +++   +EK    + D   +  +I +Y  AGN++    
Sbjct: 216 AITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARK 275

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           V+  M   GV  + +TYN+L+      K   +V  IY +M  + + P+  +YA L++AYG
Sbjct: 276 VFSSMVGKGVPQSTVTYNSLMSFETSYK---EVSKIYDQMQRSDIQPDVVSYALLIKAYG 332

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           RAR  E+ LSV+ EM + G++ +   YN LL   A  G  ++A  +F+ M+  +   PD 
Sbjct: 333 RARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRR-DRIFPDL 391

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
           W++++M++       +  AE  F  +   GFEPN+    +LI+ Y KA   + ++    +
Sbjct: 392 WSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEK 451

Query: 472 LPELGITPDDRFCGCLLN 489
           +   GI  +      +++
Sbjct: 452 MRLSGIKANQTILTTIMD 469



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 145/305 (47%), Gaps = 15/305 (4%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVI-----LYNVTMKVFRKCRDLDKAERLFDDM 191
           IIL      D    A   F   L   K  +     +Y++ + +++K  + +KA ++F  M
Sbjct: 221 IILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSM 280

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
           + +GV    VT+++L+S        +K    +++M      PD ++Y+ +I AYGRA   
Sbjct: 281 VGKGVPQSTVTYNSLMSFETSYKEVSKI---YDQMQRSDIQPDVVSYALLIKAYGRARRE 337

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           E A  +++   +   R    A++ L+  +  +G  +    V++ M+   + P++ +Y  +
Sbjct: 338 EEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTM 397

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           L     A      +  +K +  +G  PN  TY +L++ Y +A   E  + VY +M+  G+
Sbjct: 398 LSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGI 457

Query: 372 QLSVTLYNTLL---AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
           + + T+  T++     C + G    A   +++M+S     PD    + ++++ S + ++ 
Sbjct: 458 KANQTILTTIMDASGRCKNFG---SALGWYKEMESC-GVPPDQKAKNVLLSLASTQDELE 513

Query: 429 EAEAM 433
           EA+ +
Sbjct: 514 EAKEL 518



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 152/366 (41%), Gaps = 44/366 (12%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRG---VKPDNVTFSTLISCARMNNLPNKAVEW 222
           I Y + +K F +     +AE +F+ +LD     +KPD   +  +I   +      KA + 
Sbjct: 217 ITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKV 276

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F  M   G     +TY+S++        V     +YD+ +    + D  +++ LIK YG 
Sbjct: 277 FSSMVGKGVPQSTVTYNSLMSFETSYKEVS---KIYDQMQRSDIQPDVVSYALLIKAYGR 333

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           A   +  L+V+EEM   GV+P    YN LLD    +    Q KT++K M  + + P+  +
Sbjct: 334 ARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWS 393

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y ++L AY  A   E     ++ +K  G + ++  Y TL+   A     ++  E++E M+
Sbjct: 394 YTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMR 453

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            S                                    G + N  +LT+++   G+ +  
Sbjct: 454 LS------------------------------------GIKANQTILTTIMDASGRCKNF 477

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLE 522
              +     +   G+ PD +    LL++   + ++EL +  E     N     + ++   
Sbjct: 478 GSALGWYKEMESCGVPPDQKAKNVLLSL--ASTQDELEEAKELTGIRNETATIIARVYGS 535

Query: 523 EQDIEG 528
           + D EG
Sbjct: 536 DDDEEG 541



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 115/241 (47%), Gaps = 7/241 (2%)

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           W      F  LI  YG  GNF+G   V   +  +G  PN+I+Y  L+++ GR  +    +
Sbjct: 142 WNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAE 201

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
            I++ M  +G  P+  TY  +L+ +    + +  E+      + K+  ++    +Y+ ++
Sbjct: 202 AIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMI 261

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            M    G  ++A ++F  M   +     + T++S+++  +   +VS+   ++++M  +  
Sbjct: 262 YMYKKAGNYEKARKVFSSM-VGKGVPQSTVTYNSLMSFETSYKEVSK---IYDQMQRSDI 317

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 502
           +P++     LI+ YG+A+R ++ +     + + G+ P  +    LL+    +   E  K 
Sbjct: 318 QPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKT 377

Query: 503 V 503
           V
Sbjct: 378 V 378


>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
 gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 183/392 (46%), Gaps = 14/392 (3%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDT--------AALALTYFTNKLKASKEVILY 168
           DD   +L  + D  +E D ++  N + N            AL L +   +     + I Y
Sbjct: 78  DDARQLLDAMRDQDIEPD-LVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITY 136

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +    +  +LD A  +F++M+    +PD  T++ ++S         +A   F+ +  
Sbjct: 137 NTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVE 196

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  PDA+TY+S++ A+ + G+VE    + +      +R D   ++T+I +YG  G  D 
Sbjct: 197 KGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDL 256

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L +Y+EM+AIG  P+ +TY  L+D++G+  R  +   + +EM D GL P   T+++L+ 
Sbjct: 257 ALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALIC 316

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           AY ++   +D    +  M E G++     Y  +L + A    T +   ++  M   +  +
Sbjct: 317 AYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAM-IKDGYK 375

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD   +  ++   +   +  E E +  +M EA FE N  V++S++    KA+        
Sbjct: 376 PDDGLYQVLLAALAKGNEHDEIEGVIQDM-EAVFEMNPLVISSILI---KAECISQGASL 431

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
           L R    G  PD +    +L+   +  K E G
Sbjct: 432 LKRACLQGYEPDGKSLLSILDAYEKMGKHEKG 463



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 162/332 (48%), Gaps = 5/332 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN---LPNKAVE 221
           V ++N  M V+ +    D A +L D M D+ ++PD V+F+TLI+ AR  +       A+E
Sbjct: 61  VQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLIN-ARAKSGCLAAGVALE 119

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
               +   G  PDA+TY+++I A  +  N++ A  +++     + R D   ++ ++ ++G
Sbjct: 120 LLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHG 179

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G       +++E+   G +P+ +TYN+LL    +     +V+ + +E+   G   +  
Sbjct: 180 RCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGI 239

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +++  YG+    +  L +Y EM+  G       Y  L+     +    EA ++ E+M
Sbjct: 240 TYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEM 299

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             +   +P   TFS++I   +  G+  +AE  F+ M+E+G +P+      ++  + ++  
Sbjct: 300 ADA-GLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDE 358

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           T  ++     + + G  PDD     LL  + +
Sbjct: 359 TRKLMVLYRAMIKDGYKPDDGLYQVLLAALAK 390



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 183/406 (45%), Gaps = 65/406 (16%)

Query: 215 LPNKAVEWFE-RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           L + +V W   R P     P    +++M+  Y R+G  + A  L D  R++    D  +F
Sbjct: 43  LADPSVRWPHLRFPHL---PTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSF 99

Query: 274 STLIKLYGTAG-------------------------------------NFDGCLNVYEEM 296
           +TLI     +G                                     N D  + V+EEM
Sbjct: 100 NTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEM 159

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
            A   +P++ TYN ++   GR  +  + + ++KE+ + G  P+  TY SLL A+ +    
Sbjct: 160 IASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDV 219

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           E    V  E+ + G +     YNT++ M   +G  D A  ++++M++   C PD+ T++ 
Sbjct: 220 ERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAI-GCTPDAVTYTV 278

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           ++       ++SEA  +  EM +AG +P L   ++LI  Y K+ R DD  R  +R+ E G
Sbjct: 279 LVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESG 338

Query: 477 ITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGY-----VVKLLL-------EEQ 524
           + PD      +L+V  ++  +E  KL+  + ++  K GY     + ++LL       E  
Sbjct: 339 VKPDRLAYLVMLDVFARS--DETRKLM-VLYRAMIKDGYKPDDGLYQVLLAALAKGNEHD 395

Query: 525 DIEGDFKK-EATELFNS--ISKDVKKAYCNCLIDLCVNLNLLENAC 567
           +IEG  +  EA    N   IS  + KA C     +    +LL+ AC
Sbjct: 396 EIEGVIQDMEAVFEMNPLVISSILIKAEC-----ISQGASLLKRAC 436



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 118/556 (21%), Positives = 231/556 (41%), Gaps = 51/556 (9%)

Query: 167  LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
            ++N  +  + +    + A  +FD M+ +G  P   + + ++    ++   ++     + +
Sbjct: 624  IWNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQEL 683

Query: 227  PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR--------------------NEKW 266
                      T   M++A+ +AG+V     +Y+  +                    N+++
Sbjct: 684  QDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRF 743

Query: 267  R---------------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
            R                D    +TL+ +Y   GNFD  + VY  +   G++P+  TYN L
Sbjct: 744  RDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTL 803

Query: 312  LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
            +    R  RP +  T+  EM   GL+P   +Y  LL A G+A+  E    ++ EM+ KG 
Sbjct: 804  IVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGY 863

Query: 372  QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
            +L+ ++Y+ ++ +  +     +A  +   MK  +  +P   T   ++T     G   EAE
Sbjct: 864  RLNRSIYHMMMKIYRNARNHSKAEHLLSAMKE-DGIEPTIATMHILMTSYGTSGHPDEAE 922

Query: 432  AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCLL 488
             + N +  +  E +    ++++  Y    R  D    + +L E+   G+ PD +     +
Sbjct: 923  KVLNSLKSSNLEISTLPYSTVLDAY---LRNRDYSLGITKLLEMKRDGVEPDHQVWTSFI 979

Query: 489  NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT--ELFNSISKDVK 546
               +   + +   L+    KS    G+ + + L  +     F +  +  E   ++     
Sbjct: 980  RAASLCEQTDDAILLL---KSLQDCGFDLPIRLLTERTSSLFTEVDSFLEKLGTLEDSAS 1036

Query: 547  KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTA 605
              + N L DL         A  + +L +   +Y  +I       W   L+ LS GAAL A
Sbjct: 1037 LNFVNALEDLLWAFERRATASWIFQLAVKRSIYHHNIFRVEEKDWGADLRKLSAGAALVA 1096

Query: 606  LHIWINDLSKA-LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 664
            L +W++ +  A L+   E P  + + TG G  +Y+   L     ++L E+ +PF     +
Sbjct: 1097 LTLWLDQMQDASLQGAPESPKSIVLVTGEG--EYNMVSLRKTIRAYLLEMGSPFLPCRSR 1154

Query: 665  VGWFLTTEAAAKSWLE 680
             G F+    + K WL+
Sbjct: 1155 SGRFVVKAYSLKMWLK 1170



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 119/247 (48%), Gaps = 3/247 (1%)

Query: 164  EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
            ++++ N  + ++    + D+   ++  +L+ G++PD  T++TLI     N  P +     
Sbjct: 761  DLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLL 820

Query: 224  ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
              M   G  P   +Y  ++ A G+A   E A  L++  R + +R++ + +  ++K+Y  A
Sbjct: 821  YEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNA 880

Query: 284  GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
             N     ++   MK  G++P + T + L+ + G +  P + + +   +  + L  +   Y
Sbjct: 881  RNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPY 940

Query: 344  ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +++L AY R R     ++   EMK  G++    ++ + +   +    TD+A  +   +KS
Sbjct: 941  STVLDAYLRNRDYSLGITKLLEMKRDGVEPDHQVWTSFIRAASLCEQTDDAILL---LKS 997

Query: 404  SENCQPD 410
             ++C  D
Sbjct: 998  LQDCGFD 1004



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/188 (18%), Positives = 78/188 (41%)

Query: 149  ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
               L Y   K   + ++  Y + +    K +  ++A+ LF++M  +G + +   +  ++ 
Sbjct: 816  GFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMK 875

Query: 209  CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
              R     +KA      M   G +P   T   ++ +YG +G+ + A  + +  ++    I
Sbjct: 876  IYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEI 935

Query: 269  DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
                +ST++  Y    ++   +    EMK  GV+P+   + + +      ++      + 
Sbjct: 936  STLPYSTVLDAYLRNRDYSLGITKLLEMKRDGVEPDHQVWTSFIRAASLCEQTDDAILLL 995

Query: 329  KEMTDNGL 336
            K + D G 
Sbjct: 996  KSLQDCGF 1003


>gi|255661174|gb|ACU25756.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 426

 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 173/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV PD  ++STL+
Sbjct: 63  AISIFS-RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLL 121

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 179

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++   
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAY 299

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG   +
Sbjct: 300 ERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKD 354

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I  + K ++  +VV   + +  LG  PD      +LN
Sbjct: 355 ITVFERMIHLFSKYKKYGNVVEVFDEMRGLGYFPDSNVIALVLN 398



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      D  ++STL+ +Y     F 
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G + +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G D D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            EM   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DEMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 36/222 (16%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G                  
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAG------------------ 109

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
                               PD+ ++S+++T+     K  EA ++F EM E     +L  
Sbjct: 110 ------------------VTPDTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTT 151

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
              +I  YG+     +  +    + ++GI P+      LL V
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRV 193



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  P+    ++L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTL 120

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 1/130 (0%)

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           +E+ +      Y+TL+      G  D A    + M+  +    D   +S++I +      
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ-DRVPGDLVLYSNLIELSRKLCD 59

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            S+A ++F+ +  +GF P+L    ++I  +GKA+   +    ++ +   G+TPD      
Sbjct: 60  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYST 119

Query: 487 LLNVMTQTPK 496
           LL +  +  K
Sbjct: 120 LLTMYVENKK 129


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 176/378 (46%), Gaps = 15/378 (3%)

Query: 122 VLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDL 181
           V+ CL  D    + + +LN+M    T            +   +V+ Y   M  +  C  +
Sbjct: 301 VIHCLVKDGQYGEAIELLNSMREKRT------------QCPPDVVTYTSIMHSYYVCGKV 348

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           +  + +FD M+  GVKP+ V+++ L+       +   A+  F+ +   G  PD ++Y+++
Sbjct: 349 EDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTL 408

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           ++AYGR+G  E A   +   R    R +  +++ LI  YG+AG F   +++  EM+  G+
Sbjct: 409 LNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGI 468

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGEDTL 360
            P++++ + LL   GR ++  ++ TI +     G+  N   Y S + +Y     YG+  L
Sbjct: 469 PPDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGK-AL 527

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            +Y  M    +      YN L++    VG   E+ + FEDM            +SS+I  
Sbjct: 528 ELYAVMMASNVNPDAVTYNILISGLCKVGKYAESLKFFEDMVDLRIPLTKE-VYSSLICS 586

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              +GK++EAE+ F+ M E+G  P++   T++I+ Y       +       +    + PD
Sbjct: 587 YVKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPD 646

Query: 481 DRFCGCLLNVMTQTPKEE 498
              C  L+  + +  + E
Sbjct: 647 AIICSSLMEALNRGSQHE 664



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 148/352 (42%), Gaps = 46/352 (13%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLD--------------------------------- 193
           +YN  +    +      A  + DDML                                  
Sbjct: 192 IYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGAAGNWKKALELCKKM 251

Query: 194 --RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
              GV PD VT + ++S  +  +  +KA+ +FE M      PD  T + +I    + G  
Sbjct: 252 TRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCLVKDGQY 311

Query: 252 EMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
             A  L +  R ++ +  P+   +++++  Y   G  + C  V++ M A GVKPN+++YN
Sbjct: 312 GEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYN 371

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            LL              I+K +  NGL P+  +Y +LL AYGR+   E     ++EM++ 
Sbjct: 372 ALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKN 431

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS-CRGKVS 428
             + ++  YN L+      G   EA  +  +M+  +   PD  + S+++T C  CR +++
Sbjct: 432 SCRPNIVSYNALIDAYGSAGMFKEAISLLHEME-KDGIPPDVVSISTLLTACGRCR-QIT 489

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQC------YGKAQRTDDVVRALNRLPE 474
           + + +       G + N+    S I        YGKA     V+ A N  P+
Sbjct: 490 KIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPD 541



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 141/312 (45%), Gaps = 8/312 (2%)

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEE 295
           Y  MI  + R   ++ A GL+     ++WR  P+A  +++LI  +  AG +   +N+ ++
Sbjct: 158 YGMMIRLHARHSQIDQARGLFFEM--QEWRCKPDADIYNSLIHAHARAGQWRWAINIMDD 215

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M    + P+  TYNN+++  G A    +   + K+MT NG+ P+  T+  +L A+     
Sbjct: 216 MLRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTRNGVGPDLVTHNIVLSAFKNGSQ 275

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTF 414
               ++ +  MK   +       N ++      G   EA E+   M+     C PD  T+
Sbjct: 276 YSKAIAYFEMMKGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTY 335

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +S++      GKV + +A+F+ M+  G +PN+    +L+  Y       D +     L +
Sbjct: 336 TSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQ 395

Query: 475 LGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKL--LLEEQDIEGDFKK 532
            G+ PD      LLN   ++ + E  +      + NS    +V    L++     G F K
Sbjct: 396 NGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMF-K 454

Query: 533 EATELFNSISKD 544
           EA  L + + KD
Sbjct: 455 EAISLLHEMEKD 466



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 161/372 (43%), Gaps = 6/372 (1%)

Query: 114 ATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYF---TNKLKASKEVILYNV 170
           A    V +VL C    F  ++  +++  +T   +   A+  F    N+        +Y +
Sbjct: 101 AEAHAVDAVLNCWAGRFARRNFPLLIREITFAGSLQHAVHVFRWMKNQENYCARNDIYGM 160

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
            +++  +   +D+A  LF +M +   KPD   +++LI           A+   + M    
Sbjct: 161 MIRLHARHSQIDQARGLFFEMQEWRCKPDADIYNSLIHAHARAGQWRWAINIMDDMLRAA 220

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
             P   TY+++I+A G AGN + A  L  +        D    + ++  +     +   +
Sbjct: 221 IPPSRTTYNNVINACGAAGNWKKALELCKKMTRNGVGPDLVTHNIVLSAFKNGSQYSKAI 280

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS--PNWNTYASLLR 348
             +E MK   + P+  T N ++  + +  +  +   +   M +      P+  TY S++ 
Sbjct: 281 AYFEMMKGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMH 340

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           +Y      ED  +V+  M  +G++ ++  YN LL   A  G   +A  IF+ +K +   +
Sbjct: 341 SYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQN-GLR 399

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD  ++++++      G+  +A   F EM +    PN+    +LI  YG A    + +  
Sbjct: 400 PDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISL 459

Query: 469 LNRLPELGITPD 480
           L+ + + GI PD
Sbjct: 460 LHEMEKDGIPPD 471



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/424 (20%), Positives = 162/424 (38%), Gaps = 51/424 (12%)

Query: 99  YNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCV---IILNNMTNPDTAALALTYF 155
           YN+L+   A          D   + + L  + L  D V    +LN          A   F
Sbjct: 370 YNALLGAYAS----RGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAF 425

Query: 156 TNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARM 212
               K S    ++ YN  +  +       +A  L  +M   G+ PD V+ STL+ +C R 
Sbjct: 426 KEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRC 485

Query: 213 NNLP----------------------------------NKAVEWFERMPSFGCDPDALTY 238
             +                                    KA+E +  M +   +PDA+TY
Sbjct: 486 RQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVTY 545

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           + +I    + G    +   ++   + +  +    +S+LI  Y   G      + +  MK 
Sbjct: 546 NILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKE 605

Query: 299 IGVKPNMITYNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
            G  P+++TY  +++     G  +  W    ++KEM  N + P+    +SL+ A  R   
Sbjct: 606 SGCLPDVLTYTAMIEAYNDDGSWRNAWD---LFKEMEGNTVQPDAIICSSLMEALNRGSQ 662

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            E  L +   MKEK + L+   Y  ++A C+ +     A EI E + SS +      T +
Sbjct: 663 HERVLQLMELMKEKCIPLNQKAYFEIIASCSMLRDWKTASEIIEHLDSSLS-SISVGTLN 721

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
            ++T     GK      +F +M+ +     +   T L++      +    +  L  + + 
Sbjct: 722 HLLTFLGKCGKTECMMKLFYKMMSSCSTVGVSTYTVLLRNLLAVGKWRKYIEVLQWMEDA 781

Query: 476 GITP 479
           G++P
Sbjct: 782 GVSP 785



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 108/264 (40%), Gaps = 11/264 (4%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + YN+ +    K     ++ + F+DM+D  +      +S+LI          +A   F
Sbjct: 541 DAVTYNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTF 600

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   GC PD LTY++MI+AY   G+   A+ L+        + D    S+L++     
Sbjct: 601 SSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRG 660

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP-NWNT 342
              +  L + E MK   +  N   Y  ++ +     R W+  +   E  D+ LS  +  T
Sbjct: 661 SQHERVLQLMELMKEKCIPLNQKAYFEIIASCSML-RDWKTASEIIEHLDSSLSSISVGT 719

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
              LL   G+    E  + ++ +M      + V+ Y  LL     VG   +  E+ + M+
Sbjct: 720 LNHLLTFLGKCGKTECMMKLFYKMMSSCSTVGVSTYTVLLRNLLAVGKWRKYIEVLQWME 779

Query: 403 SS---------ENCQPDSWTFSSM 417
            +         +N  P  W  +SM
Sbjct: 780 DAGVSPTLYMYQNVLPYIWRDNSM 803


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1114

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 156/338 (46%), Gaps = 1/338 (0%)

Query: 144  NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF 203
            N   A +    FT  L    ++  YN+ +    +   ++ A+ +F  + + G  PD  T+
Sbjct: 766  NASGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATY 825

Query: 204  STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY-DRAR 262
            + L+     +   ++  E ++ M +  C+P+ +T++ +I    +AGNV+ A  LY D   
Sbjct: 826  NFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMS 885

Query: 263  NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
            +  +      +  LI     +G       ++E M   G +PN   YN L++  G+A    
Sbjct: 886  DRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEAD 945

Query: 323  QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
                ++K M   G+ P+  TY+ L+         ++ L  +RE+KE G+   V  YN ++
Sbjct: 946  AACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLII 1005

Query: 383  AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
                     +EA  +F +MK S    PD +T++S+I      G V EA  ++NE+  AG 
Sbjct: 1006 NGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGL 1065

Query: 443  EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            EPN+F   +LI+ Y  + + +        +   G +P+
Sbjct: 1066 EPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPN 1103



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 156/352 (44%), Gaps = 36/352 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y V +      R LD A+ +F  M     KPD VT+ TL+     N   +   +++
Sbjct: 294 DVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFW 353

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN-------------------- 263
             M   G  PD +T++ ++DA  +AGN   AF   D  R+                    
Sbjct: 354 SEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRV 413

Query: 264 -------------EKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
                        E   + P A++    I  YG +G+    L  +E+MK  G+ PN++  
Sbjct: 414 HRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVAC 473

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N  L ++ +A R  + K I+  + D GL P+  TY  +++ Y +    ++ + +  EM E
Sbjct: 474 NASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVE 533

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
              +  V + N+L+         DEA+++F  MK  +  +P   T+++++      GK+ 
Sbjct: 534 NCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMK-LKPTVVTYNTLLAGLGKNGKIQ 592

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           EA  +F  M++ G  PN     +L  C  K       ++ L ++ ++G  PD
Sbjct: 593 EAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPD 644



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 150/347 (43%), Gaps = 36/347 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  M    K RD++    L  +M   G+KP+  TF+  I         N+A E  +RM 
Sbjct: 228 YSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMD 287

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMA-------------------FGLYDR-------- 260
             GC PD +TY+ +IDA   A  ++ A                     L DR        
Sbjct: 288 DEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLD 347

Query: 261 ARNEKWR--------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
           + N+ W          D   F+ L+     AGNF       + M+  G+ PN+ TYN L+
Sbjct: 348 SVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLI 407

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
             + R  R      I+  M   G+ P   TY   +  YG++      L  + +MK KG+ 
Sbjct: 408 CGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIA 467

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            ++   N  L   A  G   EA +IF  +K      PDS T++ M+   S  G++ EA  
Sbjct: 468 PNIVACNASLYSLAKAGRDREAKQIFYGLKDI-GLVPDSVTYNMMMKCYSKVGEIDEAIK 526

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           + +EM+E   EP++ V+ SLI    KA R D+  +   R+ E+ + P
Sbjct: 527 LLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 573



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 99/462 (21%), Positives = 188/462 (40%), Gaps = 79/462 (17%)

Query: 117 DDVFSVLRCLGDDFLEQDCVII---LNNMTNPDTAALALTYFT--NKLKASKEVILYNVT 171
           D+   +L  + ++  E D +++   +N +   D    A   F    ++K    V+ YN  
Sbjct: 522 DEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTL 581

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
           +    K   + +A  LF+ M+ +G  P+ +TF+TL  C   N+    A++   +M   GC
Sbjct: 582 LAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGC 641

Query: 232 DP----------------------------------DALTYSSMIDAYGRAGNVEMAFGL 257
            P                                  D +T  +++    +AG +E A+ +
Sbjct: 642 VPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKAGLIEDAYKI 701

Query: 258 Y--------DRARNEKWR-----------IDPNAFS-------------------TLIKL 279
                    D+  N  W            ID NA S                    +I+ 
Sbjct: 702 IANFLYSCADQPANLFWEDLMGSILAEAGID-NAVSFSERLVANGICRDGDSILVPIIRY 760

Query: 280 YGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
                N  G   ++E+  K +GV+P + TYN L+  +  A      + ++ ++ + G  P
Sbjct: 761 SFKHNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIP 820

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  TY  LL AYG++   ++   +Y+EM     + +   +N +++     G  D+A +++
Sbjct: 821 DVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLY 880

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
            D+ S  +  P + T+  +I   S  G++ EA+ +F  M + G  PN  +   LI  +GK
Sbjct: 881 YDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGK 940

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
           A   D       R+ + G+ PD +    L++ +    + + G
Sbjct: 941 AGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEG 982



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 152/341 (44%), Gaps = 5/341 (1%)

Query: 142 MTNPDTAALALTYFTNKLKASKEVILY---NVTMKVFRKCRDLDKAERLFDDMLDRGVKP 198
           M+ PDT + + +YF +    S  V      N  ++  R    +++   +FD M  R +K 
Sbjct: 95  MSFPDTDS-SFSYFKSVAGNSNLVHTTETCNYMLEALRVDGKIEEMAYVFDLMQKRIIKR 153

Query: 199 DNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
           D  T+ T+  C  +     +A     +M  FG   +A +Y+ +I    ++     A  +Y
Sbjct: 154 DTNTYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVY 213

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
            R   + +R     +S+L+   G   + +  + + +EM+ +G+KPN+ T+   +  +GRA
Sbjct: 214 RRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRA 273

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
            +  +   I K M D G  P+  TY  L+ A   AR  +    V+ +MK    +     Y
Sbjct: 274 GKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTY 333

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
            TLL   +D    D   + + +M+   +  PD  TF+ ++      G   EA A  + M 
Sbjct: 334 ITLLDRFSDNRDLDSVNQFWSEMEKDGHV-PDVVTFTILVDALCKAGNFGEAFAKLDVMR 392

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           + G  PNL    +LI    +  R DD +   + +  LG+ P
Sbjct: 393 DQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKP 433



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 94/182 (51%), Gaps = 3/182 (1%)

Query: 167  LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
            +YN+ +  F K  + D A  LF  M+  GV+PD  T+S L+ C  M    ++ + +F  +
Sbjct: 930  IYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFREL 989

Query: 227  PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAG 284
               G +PD + Y+ +I+  G+   +E A  L++  +  +  I P+   +++LI   G AG
Sbjct: 990  KESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRG-ITPDLYTYNSLILNLGIAG 1048

Query: 285  NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
              +    +Y E++  G++PN+ T+N L+     + +P     +Y+ M   G SPN  TY 
Sbjct: 1049 MVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYE 1108

Query: 345  SL 346
             L
Sbjct: 1109 QL 1110



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 106/253 (41%), Gaps = 37/253 (14%)

Query: 166  ILYNVTMKVFRKCRDLDKAERLFDDML-DRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
            I +N+ +    K  ++D A  L+ D++ DR   P   T+  LI     +    +A + FE
Sbjct: 858  ITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFE 917

Query: 225  RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
             M  +GC P+   Y+ +I+ +G+AG  + A  L+ R   E  R D   +S L+      G
Sbjct: 918  GMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVG 977

Query: 285  NFDGCLNVYEEMK------------------------------------AIGVKPNMITY 308
              D  L+ + E+K                                    + G+ P++ TY
Sbjct: 978  RVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTY 1037

Query: 309  NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
            N+L+  +G A    +   IY E+   GL PN  T+ +L+R Y  +   E   +VY+ M  
Sbjct: 1038 NSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVT 1097

Query: 369  KGMQLSVTLYNTL 381
             G   +   Y  L
Sbjct: 1098 GGFSPNTGTYEQL 1110



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 115/245 (46%), Gaps = 3/245 (1%)

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           T + M++A    G +E    ++D  +    + D N + T+ K     G          +M
Sbjct: 122 TCNYMLEALRVDGKIEEMAYVFDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKM 181

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           +  G   N  +YN L+  + +++   +   +Y+ M  +G  P+  TY+SL+   G+ R  
Sbjct: 182 REFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDI 241

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           E  + + +EM+  G++ +V  +   + +    G  +EA+EI + M   E C PD  T++ 
Sbjct: 242 ESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRM-DDEGCGPDVVTYTV 300

Query: 417 MI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           +I  +C+ R K+  A+ +F +M     +P+     +L+  +   +  D V +  + + + 
Sbjct: 301 LIDALCTAR-KLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKD 359

Query: 476 GITPD 480
           G  PD
Sbjct: 360 GHVPD 364



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 113/266 (42%), Gaps = 40/266 (15%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D  A  + Y    +    + + YN+ MK + K  ++D+A +L  +M++   +PD +  ++
Sbjct: 486 DREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNS 545

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           LI+     +  ++A + F RM      P  +TY++++   G+ G ++ A           
Sbjct: 546 LINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEA----------- 594

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
                                   + ++E M   G  PN IT+N L D + +        
Sbjct: 595 ------------------------IELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLAL 630

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGE--DTLSVYREMKEKGMQLSVTLYNTLLA 383
            +  +M D G  P+  TY +++  +G  + G+  + +  + +MK+      VTL  TLL 
Sbjct: 631 KMLFKMMDMGCVPDVFTYNTII--FGLVKNGQVKEAMCFFHQMKKLVYPDFVTL-CTLLP 687

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQP 409
                G  ++A++I  +   S   QP
Sbjct: 688 GVVKAGLIEDAYKIIANFLYSCADQP 713



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 83/192 (43%), Gaps = 5/192 (2%)

Query: 293 YEEMKAIGVKPNMI----TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
           +   K++    N++    T N +L+ +    +  ++  ++  M    +  + NTY ++ +
Sbjct: 104 FSYFKSVAGNSNLVHTTETCNYMLEALRVDGKIEEMAYVFDLMQKRIIKRDTNTYLTIFK 163

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
                          R+M+E G  L+   YN L+ +     +  EA E++  M   +  +
Sbjct: 164 CLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRM-ILDGFR 222

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           P   T+SS++     R  +     +  EM   G +PN++  T  I+  G+A + ++    
Sbjct: 223 PSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEI 282

Query: 469 LNRLPELGITPD 480
           L R+ + G  PD
Sbjct: 283 LKRMDDEGCGPD 294


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 176/343 (51%), Gaps = 3/343 (0%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNL 215
           N +K    V  YN  + +  +   +D+ +R++ +ML+  + P+  T +T+++  ++M N+
Sbjct: 171 NDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNI 230

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
             +A  +  ++   G  PD+ TY+S+I  Y R  +V  A+ +++   N+  R +  +++T
Sbjct: 231 V-EANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTT 289

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           +I     AG  D  ++++++M+     P + TY  ++  +    R  +   ++ EM +  
Sbjct: 290 IIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERS 349

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
             PN +TY  ++ A  + R  +++  +  EM EKG+  SV  YN L+    + G  + A 
Sbjct: 350 CEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAAL 409

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           EI   M+S+ NC+P+  T++ +I   S R  V +A  + ++MLE+   P+L    SLI  
Sbjct: 410 EILGLMESN-NCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHV 468

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
             KA   D   + L+ L E G+ PD       ++ + ++ + E
Sbjct: 469 QCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRME 511



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 192/412 (46%), Gaps = 43/412 (10%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +  + K  ++ +A      +   G+ PD+ T+++LI     NN  N A + F  MP+
Sbjct: 218 NTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPN 277

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFD 287
            GC  + ++Y+++I     AG ++    L+ + R +        ++ +I  L+G   N +
Sbjct: 278 KGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLE 337

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
           G ++++ EM+    +PN+ TY  ++D M + ++  + + I  EM + GL P+  TY +L+
Sbjct: 338 G-MDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALI 396

Query: 348 RAY---GRA--------------------------------RYGEDTLSVYREMKEKGMQ 372
           R Y   GR                                 ++    +++  +M E  + 
Sbjct: 397 RGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLT 456

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAE 431
            S+  YN+L+ +    G+ D A+++ + +K +    PD WT+S  I T+C  + ++ EA 
Sbjct: 457 PSLVTYNSLIHVQCKAGHFDSAYKLLDLLKEN-GLVPDQWTYSVFIDTLCKSK-RMEEAC 514

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            +FN + E G + N  + T+LI  + KA + D+ +  L R+      P+      L+  +
Sbjct: 515 DLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGV 574

Query: 492 TQTPKEELG-KLVECVEKSNSKLGYVV-KLLLEEQDIEGDFKKEATELFNSI 541
            +  K + G  +VE + K   K       +L+EE   EGDF   A  +FN +
Sbjct: 575 CKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDF-DHANRVFNQM 625



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 144/311 (46%), Gaps = 2/311 (0%)

Query: 170 VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
           +   +F   R+L+  + LF++M +R  +P+  T++ ++         +++      M   
Sbjct: 325 IIHALFGNDRNLEGMD-LFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEK 383

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
           G  P  +TY+++I  Y   G +E A  +     +   R +   ++ LI  +    +    
Sbjct: 384 GLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKA 443

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           + +  +M    + P+++TYN+L+    +A        +   + +NGL P+  TY+  +  
Sbjct: 444 MTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDT 503

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
             +++  E+   ++  +KEKG++ +  +Y  L+      G  DEA  + E M S E+C P
Sbjct: 504 LCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHS-EDCLP 562

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           +S T++S+I      GKV E  +M   M + G +P +   T LI+   +    D   R  
Sbjct: 563 NSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVF 622

Query: 470 NRLPELGITPD 480
           N++   G  PD
Sbjct: 623 NQMVSFGHKPD 633



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 152/349 (43%), Gaps = 40/349 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--C--ARM----------- 212
           Y V +    K R LD++ R+ ++M+++G+ P  VT++ LI   C   R+           
Sbjct: 357 YTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLME 416

Query: 213 --NNLPN------------------KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
             N  PN                  KA+    +M      P  +TY+S+I    +AG+ +
Sbjct: 417 SNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFD 476

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A+ L D  +      D   +S  I     +   +   +++  +K  G+K N + Y  L+
Sbjct: 477 SAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALI 536

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG--EDTLSVYREMKEKG 370
           D   +A +  +  ++ + M      PN +TY SL+  YG  + G  ++ LS+   M + G
Sbjct: 537 DGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLI--YGVCKEGKVQEGLSMVENMSKMG 594

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
           ++ +V  Y  L+      G  D A  +F  M S  + +PD +T+++ I      G V EA
Sbjct: 595 VKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGH-KPDVYTYTAFIHTYCTSGNVKEA 653

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           E M   M+EAG  P+    T LI  Y +     D    L R+ + G  P
Sbjct: 654 EGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDP 702



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 122/270 (45%), Gaps = 3/270 (1%)

Query: 151 ALTYFTNKL--KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+T  +  L  K +  ++ YN  + V  K    D A +L D + + G+ PD  T+S  I 
Sbjct: 443 AMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFID 502

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               +    +A + F  +   G   + + Y+++ID + +AG ++ A  L +R  +E    
Sbjct: 503 TLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLP 562

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           + + +++LI      G     L++ E M  +GVKP + TY  L++ M R         ++
Sbjct: 563 NSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVF 622

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            +M   G  P+  TY + +  Y  +   ++   +   M E G+      Y  L++    +
Sbjct: 623 NQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERL 682

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
           G   +AF + + M  +  C P    ++++I
Sbjct: 683 GLAYDAFNVLKRMLDA-GCDPSHPIWNNLI 711



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
           R+  +   +LSV  YN LL M A     DE   ++ +M  ++   P+ +T ++M+   S 
Sbjct: 168 RDDNDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEM-LNDMIVPNIYTLNTMVNAYSK 226

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
            G + EA    +++ +AG  P+ F  TSLI  Y +    +   +  N +P  G
Sbjct: 227 MGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKG 279



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 52/112 (46%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
            L++    +K+     V  Y + ++   +  D D A R+F+ M+  G KPD  T++  I 
Sbjct: 583 GLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIH 642

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR 260
               +    +A     RM   G  PD+LTY+ +I AY R G    AF +  R
Sbjct: 643 TYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKR 694


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 149/346 (43%), Gaps = 37/346 (10%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
           A RL D++       D   ++T++          +A+  FE+M   G  P  +TY+ M+D
Sbjct: 193 ALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLD 252

Query: 244 AYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            YG+ G       GL D  R+     D    ST+I   G  G  D     +  +K+ G  
Sbjct: 253 VYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYV 312

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN---------------------------- 334
               TYN+LL   G+A    +  +I KEM  N                            
Sbjct: 313 AGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADF 372

Query: 335 -------GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
                  G+ PN  TY +++ AYG+A   +  LS +R+MKE G   +V  YN +L M   
Sbjct: 373 IDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGK 432

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
               +E  ++  DM+S+  C P+S T+++M+ +C  +G       +F EM   GFEPN  
Sbjct: 433 KSRLEEMIDMLCDMRSN-GCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRD 491

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
              +LI  YG+     DVV+    + + G TP       LLN + +
Sbjct: 492 TFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALAR 537



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 169/361 (46%), Gaps = 7/361 (1%)

Query: 151 ALTYF--TNKLKASKEVILYNVTMKVFRKC-RDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A+T F    K   S  ++ YNV + V+ K  R  +K   L D+M   G++ D  T ST+I
Sbjct: 228 AITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVI 287

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           S      L ++A ++F R+ S G      TY+S++  +G+AG    A  +          
Sbjct: 288 SACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCP 347

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   ++ L+  Y  AG  +   +  + M   G+ PN ITY  +++  G+A +  +  + 
Sbjct: 348 PDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSF 407

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           +++M ++G  PN  TY ++L   G+    E+ + +  +M+  G   +   +NT+LAMC +
Sbjct: 408 FRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGN 467

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G       +F +MKS    +P+  TF+++I      G   +   M+ EM++AGF P + 
Sbjct: 468 KGMHKYVNRVFREMKSC-GFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVT 526

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
              +L+    +    +     +  +   G  P++     +LN   +      G+ +E +E
Sbjct: 527 TYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGN---GRGIEKIE 583

Query: 508 K 508
           +
Sbjct: 584 E 584



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 174/397 (43%), Gaps = 42/397 (10%)

Query: 123 LRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEV---ILYNVTMKVFRKCR 179
           +R  G +F E  C  +++          A  +F  +LK+   V     YN  ++VF K  
Sbjct: 271 MRSNGLEFDEFTCSTVISACGREGLLDEARKFFA-RLKSEGYVAGTFTYNSLLQVFGKAG 329

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
              +A  +  +M      PD VT++ L++         +  ++ + M   G  P+A+TY+
Sbjct: 330 IYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYT 389

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           ++I+AYG+AG  + A   + + +      +   ++ ++ + G     +  +++  +M++ 
Sbjct: 390 TVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSN 449

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G  PN +T+N +L   G       V  +++EM   G  PN +T+ +L+ AYGR     D 
Sbjct: 450 GCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDV 509

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           + +Y EM + G    VT YN LL   A  G  + A  +  DMK S+  +P+  ++S M+ 
Sbjct: 510 VKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMK-SKGFKPNETSYSLMLN 568

Query: 420 ICSCRG-------KVSE-----------------------------AEAMFNEMLEAGFE 443
            C  +G       K+ E                              E  F E  + G++
Sbjct: 569 -CYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYK 627

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           P+L +  S++  + K +  D     L  + E G+ PD
Sbjct: 628 PDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPD 664



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 118/241 (48%), Gaps = 2/241 (0%)

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           M+   GR     +A  L D    E++ +D  A++T++  Y   G ++  + ++E+M+  G
Sbjct: 180 MVRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTG 239

Query: 301 VKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           + P ++TYN +LD  G+  R W ++  +  EM  NGL  +  T ++++ A GR    ++ 
Sbjct: 240 LSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEA 299

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
              +  +K +G       YN+LL +    G   EA  I ++M+ + NC PD  T++ ++ 
Sbjct: 300 RKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKN-NCPPDLVTYNELVA 358

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                G   E     + M+  G  PN    T++I  YGKA + D  +    ++ E G  P
Sbjct: 359 AYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVP 418

Query: 480 D 480
           +
Sbjct: 419 N 419



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 159/362 (43%), Gaps = 37/362 (10%)

Query: 147 TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           + AL++     K     +++ YN  +  + +    ++     D M+ +G+ P+ +T++T+
Sbjct: 332 SEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTV 391

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
           I+        +KA+ +F +M   GC P+  TY++++   G+   +E    +    R+   
Sbjct: 392 INAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGC 451

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             +   ++T++ + G  G       V+ EMK+ G +PN  T+N L+   GR      V  
Sbjct: 452 APNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVK 511

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +Y+EM   G +P   TY +LL A  R    E   SV  +MK KG + + T Y+ +L   A
Sbjct: 512 MYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYA 571

Query: 387 DVGYTDEAFEIFEDMKSS------------------------------ENCQ----PDSW 412
             G      +I E++ +                               E C+    PD  
Sbjct: 572 KGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLV 631

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRAL 469
            F+SM++I +       A  M   + E+G +P+L    SL+  Y   G+  + +++++ +
Sbjct: 632 LFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGI 691

Query: 470 NR 471
            +
Sbjct: 692 QK 693



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 161/332 (48%), Gaps = 5/332 (1%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AL++F  ++K S     V  YN  + +  K   L++   +  DM   G  P++VT++T++
Sbjct: 404 ALSFF-RQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTML 462

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +      +       F  M S G +P+  T++++I AYGR G+      +Y+      + 
Sbjct: 463 AMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFT 522

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                ++ L+      G+++   +V  +MK+ G KPN  +Y+ +L+   +      ++ I
Sbjct: 523 PCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKI 582

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            +E+ +  + P+W    +L+ A  + R        ++E  + G +  + L+N++L++ A 
Sbjct: 583 EEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAK 642

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
               D A E+   ++ S   QPD  T++S++ + +  G+  + E +   + ++G +P+L 
Sbjct: 643 NKMYDRAHEMLRLIRES-GLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLV 701

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
              ++I+ + +     + +R L+ +   GI P
Sbjct: 702 SYNTVIKGFCRQGLMQEAIRTLSEMTISGIRP 733



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 143/332 (43%), Gaps = 36/332 (10%)

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
           R+F +M   G +P+  TF+ LI            V+ +E M   G  P   TY+++++A 
Sbjct: 476 RVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNAL 535

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM--------- 296
            R G+ E A  +    +++ ++ +  ++S ++  Y   GN  G   + EE+         
Sbjct: 536 ARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSW 595

Query: 297 -------------KAI-------------GVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
                        +A+             G KP+++ +N++L    + K   +   + + 
Sbjct: 596 ILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRL 655

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           + ++GL P+  TY SL+  Y R         + + +++ G +  +  YNT++      G 
Sbjct: 656 IRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGL 715

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
             EA     +M  S   +P   T+++ +   S +G  SE E + + M++    PN     
Sbjct: 716 MQEAIRTLSEMTIS-GIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYK 774

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
            ++  Y K ++  + +  ++ + E+  + DD+
Sbjct: 775 IVVDGYCKGKKYKEAMDFVSNITEMDKSFDDQ 806



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 126/265 (47%), Gaps = 8/265 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           V  YN  +    +  D + AE +  DM  +G KP+  ++S +++C A+  N   + +E  
Sbjct: 525 VTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGN--GRGIEKI 582

Query: 224 ERMPSFG-CDPDALTYSSMIDA-YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
           E     G   P  +   +++ A + R   + M     +  ++  ++ D   F++++ ++ 
Sbjct: 583 EEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKH-GYKPDLVLFNSMLSIFA 641

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
               +D    +   ++  G++P+++TYN+L+D   R    W+ + I K +  +G  P+  
Sbjct: 642 KNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLV 701

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           +Y ++++ + R    ++ +    EM   G++  +  YNT +A  +  G   E  E+   M
Sbjct: 702 SYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYM 761

Query: 402 KSSENCQPDSWTFSSMITICSCRGK 426
               +C+P+  T+  ++    C+GK
Sbjct: 762 -IQHDCRPNELTY-KIVVDGYCKGK 784



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 41/82 (50%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  +K F +   + +A R   +M   G++P  VT++T ++      + ++  E  
Sbjct: 699 DLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVI 758

Query: 224 ERMPSFGCDPDALTYSSMIDAY 245
             M    C P+ LTY  ++D Y
Sbjct: 759 SYMIQHDCRPNELTYKIVVDGY 780



 Score = 38.9 bits (89), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 40/86 (46%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  M ++ +  +  K E +   +   G KPD V+++T+I       L  +A+   
Sbjct: 664 DLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTL 723

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAG 249
             M   G  P  +TY++ +  Y   G
Sbjct: 724 SEMTISGIRPCIVTYNTFVAGYSGKG 749


>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
          Length = 838

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 152/316 (48%), Gaps = 7/316 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +K +     L+KAE +F +M   G  P  V ++  I          KAVE FERM 
Sbjct: 136 YALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMK 195

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C P   TY+ +I+ YG+A    MA  ++   R++K + +   F+ L+  +   G  +
Sbjct: 196 RDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCE 255

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++E+++  G++P++  YN L++   RA  P+    I+  M   G  P+  +Y  ++
Sbjct: 256 KAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMV 315

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            AYGRA   ED  +V+  MK  G+  ++  +  LL+  +  G   +  EI   M  S   
Sbjct: 316 DAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKS-GI 374

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---QRTDD 464
           +PD++  +SM+ +    G+  + E +   M +  +  ++     LI  YG+A    R ++
Sbjct: 375 KPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEE 434

Query: 465 VVRALNRLPELGITPD 480
           + R+   LP   + PD
Sbjct: 435 LFRS---LPARNLIPD 447



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 158/313 (50%), Gaps = 4/313 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI YN+ +  + +     KAE  + ++L+    P   T++ L+     + L  KA   F
Sbjct: 97  DVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVF 156

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M  +G  P A+ Y++ ID   + G+ + A  +++R + ++ +     ++ LI LYG A
Sbjct: 157 AEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKA 216

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                 L V+ EM++   KPN+ T+  L++   R     + + I++++ + GL P+   Y
Sbjct: 217 SKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAY 276

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ AY RA +      ++  M+  G +     YN ++      G  ++A  +FE MK 
Sbjct: 277 NALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKR 336

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---Q 460
                P   +   +++  S  GKV++ E + N+M ++G +P+ FVL S++  YG+    +
Sbjct: 337 L-GITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFE 395

Query: 461 RTDDVVRALNRLP 473
           + ++V+ A+ + P
Sbjct: 396 KMEEVLTAMEKGP 408



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 139/311 (44%), Gaps = 9/311 (2%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL + +     K    +  +   +  F +    +KAE +F+ + + G++PD   ++ L+ 
Sbjct: 222 ALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALME 281

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                  P  A E F  M   GC+PD  +Y+ M+DAYGRAG  E A  +++  +  +  I
Sbjct: 282 AYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMK--RLGI 339

Query: 269 DPNAFSTLIKL--YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
            P   S ++ L  Y  AG    C  +  +M   G+KP+    N++L+  GR  +  +++ 
Sbjct: 340 TPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEE 399

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +   M       + +TY  L+  YGRA +      ++R +  + +   V  + + +   +
Sbjct: 400 VLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYS 459

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
                +   E+FE+M  +  C PD  T  +++     +  +  A  +      + F P  
Sbjct: 460 RRKQYNRCLEVFEEMIDA-GCYPDGGTAKNVL----LKVAIFMASFLVGSASPSPFSPTA 514

Query: 447 FVLTSLIQCYG 457
            +L S+++  G
Sbjct: 515 PILGSILRSLG 525


>gi|410110087|gb|AFV61123.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           urticoides]
          Length = 423

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 175/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK+S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 53  AISIFS-RLKSSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL 111

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 112 TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 169

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 170 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 229

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++   
Sbjct: 230 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 289

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG   +
Sbjct: 290 ERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKD 344

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 345 ITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLN 388



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 150/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 2   YSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 61

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S G  PD + Y++MI+ +G+A     A  L    +      +  ++STL+ +Y     F 
Sbjct: 62  SSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFL 121

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 122 EALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 181

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ S   
Sbjct: 182 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQ-SRGI 240

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R
Sbjct: 241 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKR 300

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 301 LLHELKRPDNIPRD 314



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  + ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 193 AIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 252

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 253 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 308

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 309 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVF 368

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+ +  +    VY EM+E G
Sbjct: 369 DKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQEVG 410



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 131/278 (47%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 143 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 202

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SMI  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 203 KNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 260

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 261 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 319

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 320 LAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGL-G 375

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   + +  + +  GK+ E   A  ++ EM E G
Sbjct: 376 YFPDS---NVIAVVLNAYGKLQEFDKANDVYMEMQEVG 410


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 169/344 (49%), Gaps = 3/344 (0%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
           ++  M  PD   ++L     + +   ++  +N+ +K F  C  L  A   F  +   G+ 
Sbjct: 88  VVVRMERPDLV-ISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLH 146

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           PD VTF+TL+    + +  ++A+++F +M    C P+ +T++++++   R G +  A  L
Sbjct: 147 PDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMG 316
            DR   +  +     + T++      G+    LN+  +M+ +  + PN++ Y+ ++D++ 
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLC 266

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +  R    + ++ EM + G+ P+  TY S++  +  +    D   + +EM E+ +   V 
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            YN L+      G   EA E++++M       P++ T+SSMI     + ++  AE MF  
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEML-PRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           M   G  PNL    +LI  Y  A+R DD +  L+ + E G+  D
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 151/325 (46%), Gaps = 33/325 (10%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S +V+ YN  +  F K     +AE L+D+ML RG+ P+ +T+S++I      N  + A
Sbjct: 320 KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAA 379

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              F  M + GC P+ +T++++ID Y  A  ++    L           D   ++TLI  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQV-KTIYKEMTDNG 335
           +   G+ +  L++ +EM + G+ P+++T + LLD +   G+ K   ++ K + K   D  
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
            S  +N                            G++  V  YN L++   + G   EA 
Sbjct: 500 ASHPFN----------------------------GVEPDVQTYNILISGLINEGKFLEAE 531

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           E++E+M       PD+ T+SSMI     + ++ EA  MF+ M    F PN+   T+LI  
Sbjct: 532 ELYEEM-PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 456 YGKAQRTDDVVRALNRLPELGITPD 480
           Y KA R DD +     +   GI  +
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVAN 615



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 168/426 (39%), Gaps = 83/426 (19%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD--LDKAERLFDDMLDRG 195
           +L+ +   D  + AL +F    + +    +   T  +   CR+  + +A  L D M++ G
Sbjct: 155 LLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214

Query: 196 VKPDNVTFSTLIS--CARMNN----------------LPNKAV----------------- 220
           ++P  +T+ T++   C + +                 +PN  +                 
Sbjct: 215 LQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 221 -EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              F  M   G  PD  TY+SMI  +  +G    A  L       K   D   ++ LI  
Sbjct: 275 QNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +   G F     +Y+EM   G+ PN ITY++++D   +  R    + ++  M   G SPN
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL----------------- 382
             T+ +L+  Y  A+  +D + +  EM E G+    T YNTL+                 
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQ 454

Query: 383 -----AMCADV-------------GYTDEAFEIFEDMKSSE----------NCQPDSWTF 414
                 +C D+             G   +A E+F+ M+ S+            +PD  T+
Sbjct: 455 EMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTY 514

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + +I+     GK  EAE ++ EM   G  P+    +S+I    K  R D+  +  + +  
Sbjct: 515 NILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGS 574

Query: 475 LGITPD 480
              +P+
Sbjct: 575 KSFSPN 580



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 123/278 (44%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A++ F  M      P  + +  ++    R    ++   LY +   ++ R D  +F+ LIK
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIK 122

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            + +       L+ + ++  +G+ P+++T+  LL  +    R  +    + +M +    P
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRP 182

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N  T+ +L+    R     + +++   M E G+Q +   Y T++      G T  A  + 
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
             M+   +  P+   +S++I      G+ S+A+ +F EM E G  P+LF   S+I  +  
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           + R  D  + L  + E  I+PD      L+N   +  K
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 140/320 (43%), Gaps = 12/320 (3%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F + + L+ A  LF DML     P  V F  L+        P+  +  +++M       D
Sbjct: 54  FHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCD 113

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
             +++ +I  +     +  A   + +        D   F+TL+            L+ + 
Sbjct: 114 IYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFH 173

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           +M     +PN++T+  L++ + R  R  +   +   M ++GL P   TY +++    +  
Sbjct: 174 QMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG 233

Query: 355 YGEDTLSVYREMKEKGMQL-SVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
                L++ R+M+E    + +V +Y+ ++ ++C D G   +A  +F +M+  +   PD +
Sbjct: 234 DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD-GRHSDAQNLFTEMQ-EKGIFPDLF 291

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T++SMI      G+ S+AE +  EMLE    P++    +LI  + K  +  +     + +
Sbjct: 292 TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351

Query: 473 PELGITPD--------DRFC 484
              GI P+        D FC
Sbjct: 352 LPRGIIPNTITYSSMIDGFC 371


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 171/366 (46%), Gaps = 12/366 (3%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++YNV +    K  DL +  +L D+M  +G  P+ VT++TLI    +    +KAV   ER
Sbjct: 258 VIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLER 317

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S  C P+ +TY ++I+   +      A  L        + ++ + +S LI      G 
Sbjct: 318 MVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGK 377

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  ++++ +M   G KPN++ Y+ L+D + R  +P + K I   M  +G  PN  TY+S
Sbjct: 378 AEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSS 437

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L++ + +    E+ + V++EM + G   +   Y+ L+     VG   EA  ++  M +  
Sbjct: 438 LMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTI- 496

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEML---EAGFEPNLFVLTSLIQCYGKAQRT 462
             +PD+  +SS+I      G +  A  +++EML   E   +P++     L+      +  
Sbjct: 497 GIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDI 556

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLE 522
              V  LN + + G  PD   C   LN +++             +K  S L  +V  LL+
Sbjct: 557 SRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNS--------CDKGRSFLEELVVRLLK 608

Query: 523 EQDIEG 528
            Q + G
Sbjct: 609 RQRVSG 614



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 158/344 (45%), Gaps = 6/344 (1%)

Query: 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRK----CRDLDKAERLFDDMLDRGVKPDN 200
           PD A        ++ +  + V  +N  + V        R L+  + + +  ++  + P+ 
Sbjct: 128 PDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNG 187

Query: 201 VTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR 260
           ++F+ +I         ++A+E F  MP   C PD  TY +++D   +   ++ A  L D 
Sbjct: 188 LSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDE 247

Query: 261 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
            ++E     P  ++ LI      G+      + + M   G  PN +TYN L+  +    +
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGK 307

Query: 321 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 380
             +  ++ + M  +   PN  TY +L+    + R   D + +   M+E+G  L+  +Y+ 
Sbjct: 308 LDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSV 367

Query: 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
           L++     G  +EA  ++  M + + C+P+   +S ++      GK +EA+ + N M+ +
Sbjct: 368 LISGLFKEGKAEEAMSLWRKM-AEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIAS 426

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
           G  PN +  +SL++ + K    ++ V+    + + G +  ++FC
Sbjct: 427 GCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCS-RNKFC 469


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 149/346 (43%), Gaps = 37/346 (10%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
           A RL D++       D   ++T++          +A+  FE+M   G  P  +TY+ M+D
Sbjct: 193 ALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLD 252

Query: 244 AYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            YG+ G       GL D  R+     D    ST+I   G  G  D     +  +K+ G  
Sbjct: 253 VYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYV 312

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN---------------------------- 334
               TYN+LL   G+A    +  +I KEM  N                            
Sbjct: 313 AGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADF 372

Query: 335 -------GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
                  G+ PN  TY +++ AYG+A   +  LS +R+MKE G   +V  YN +L M   
Sbjct: 373 IDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGK 432

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
               +E  ++  DM+S+  C P+S T+++M+ +C  +G       +F EM   GFEPN  
Sbjct: 433 KSRLEEMIDMLCDMRSN-GCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRD 491

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
              +LI  YG+     DVV+    + + G TP       LLN + +
Sbjct: 492 TFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALAR 537



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 169/361 (46%), Gaps = 7/361 (1%)

Query: 151 ALTYF--TNKLKASKEVILYNVTMKVFRKC-RDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A+T F    K   S  ++ YNV + V+ K  R  +K   L D+M   G++ D  T ST+I
Sbjct: 228 AITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVI 287

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           S      L ++A ++F R+ S G      TY+S++  +G+AG    A  +          
Sbjct: 288 SACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCP 347

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   ++ L+  Y  AG  +   +  + M   G+ PN ITY  +++  G+A +  +  + 
Sbjct: 348 PDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSF 407

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           +++M ++G  PN  TY ++L   G+    E+ + +  +M+  G   +   +NT+LAMC +
Sbjct: 408 FRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGN 467

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G       +F +MKS    +P+  TF+++I      G   +   M+ EM++AGF P + 
Sbjct: 468 KGMHKYVNRVFREMKSC-GFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVT 526

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
              +L+    +    +     +  +   G  P++     +LN   +      G+ +E +E
Sbjct: 527 TYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGN---GRGIEKIE 583

Query: 508 K 508
           +
Sbjct: 584 E 584



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 174/397 (43%), Gaps = 42/397 (10%)

Query: 123 LRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEV---ILYNVTMKVFRKCR 179
           +R  G +F E  C  +++          A  +F  +LK+   V     YN  ++VF K  
Sbjct: 271 MRSNGLEFDEFTCSTVISACGREGLLDEARKFFA-RLKSEGYVAGTFTYNSLLQVFGKAG 329

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
              +A  +  +M      PD VT++ L++         +  ++ + M   G  P+A+TY+
Sbjct: 330 IYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYT 389

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           ++I+AYG+AG  + A   + + +      +   ++ ++ + G     +  +++  +M++ 
Sbjct: 390 TVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSN 449

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G  PN +T+N +L   G       V  +++EM   G  PN +T+ +L+ AYGR     D 
Sbjct: 450 GCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDV 509

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           + +Y EM + G    VT YN LL   A  G  + A  +  DMK S+  +P+  ++S M+ 
Sbjct: 510 VKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMK-SKGFKPNETSYSLMLN 568

Query: 420 ICSCRG-------KVSE-----------------------------AEAMFNEMLEAGFE 443
            C  +G       K+ E                              E  F E  + G++
Sbjct: 569 -CYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYK 627

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           P+L +  S++  + K +  D     L  + E G+ PD
Sbjct: 628 PDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPD 664



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 118/241 (48%), Gaps = 2/241 (0%)

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           M+   GR     +A  L D    E++ +D  A++T++  Y   G ++  + ++E+M+  G
Sbjct: 180 MVRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTG 239

Query: 301 VKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           + P ++TYN +LD  G+  R W ++  +  EM  NGL  +  T ++++ A GR    ++ 
Sbjct: 240 LSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEA 299

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
              +  +K +G       YN+LL +    G   EA  I ++M+ + NC PD  T++ ++ 
Sbjct: 300 RKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKN-NCPPDLVTYNELVA 358

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                G   E     + M+  G  PN    T++I  YGKA + D  +    ++ E G  P
Sbjct: 359 AYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVP 418

Query: 480 D 480
           +
Sbjct: 419 N 419



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 159/362 (43%), Gaps = 37/362 (10%)

Query: 147 TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           + AL++     K     +++ YN  +  + +    ++     D M+ +G+ P+ +T++T+
Sbjct: 332 SEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTV 391

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
           I+        +KA+ +F +M   GC P+  TY++++   G+   +E    +    R+   
Sbjct: 392 INAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGC 451

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             +   ++T++ + G  G       V+ EMK+ G +PN  T+N L+   GR      V  
Sbjct: 452 APNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVK 511

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +Y+EM   G +P   TY +LL A  R    E   SV  +MK KG + + T Y+ +L   A
Sbjct: 512 MYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYA 571

Query: 387 DVGYTDEAFEIFEDMKSS------------------------------ENCQ----PDSW 412
             G      +I E++ +                               E C+    PD  
Sbjct: 572 KGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLV 631

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRAL 469
            F+SM++I +       A  M   + E+G +P+L    SL+  Y   G+  + +++++ +
Sbjct: 632 LFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGI 691

Query: 470 NR 471
            +
Sbjct: 692 QK 693



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 161/332 (48%), Gaps = 5/332 (1%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AL++F  ++K S     V  YN  + +  K   L++   +  DM   G  P++VT++T++
Sbjct: 404 ALSFF-RQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTML 462

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +      +       F  M S G +P+  T++++I AYGR G+      +Y+      + 
Sbjct: 463 AMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFT 522

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                ++ L+      G+++   +V  +MK+ G KPN  +Y+ +L+   +      ++ I
Sbjct: 523 PCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKI 582

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            +E+ +  + P+W    +L+ A  + R        ++E  + G +  + L+N++L++ A 
Sbjct: 583 EEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAK 642

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
               D A E+   ++ S   QPD  T++S++ + +  G+  + E +   + ++G +P+L 
Sbjct: 643 NKMYDRAHEMLRLIRES-GLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLV 701

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
              ++I+ + +     + +R L+ +   GI P
Sbjct: 702 SYNTVIKGFCRQGLMQEAIRTLSEMTISGIRP 733



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 143/332 (43%), Gaps = 36/332 (10%)

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
           R+F +M   G +P+  TF+ LI            V+ +E M   G  P   TY+++++A 
Sbjct: 476 RVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNAL 535

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM--------- 296
            R G+ E A  +    +++ ++ +  ++S ++  Y   GN  G   + EE+         
Sbjct: 536 ARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSW 595

Query: 297 -------------KAI-------------GVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
                        +A+             G KP+++ +N++L    + K   +   + + 
Sbjct: 596 ILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRL 655

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           + ++GL P+  TY SL+  Y R         + + +++ G +  +  YNT++      G 
Sbjct: 656 IRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGL 715

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
             EA     +M  S   +P   T+++ +   S +G  SE E + + M++    PN     
Sbjct: 716 MQEAIRTLSEMTIS-GIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYK 774

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
            ++  Y K ++  + +  ++ + E+  + DD+
Sbjct: 775 IVVDGYCKGKKYKEAMDFVSNITEMDKSFDDQ 806



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 126/265 (47%), Gaps = 8/265 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           V  YN  +    +  D + AE +  DM  +G KP+  ++S +++C A+  N   + +E  
Sbjct: 525 VTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGN--GRGIEKI 582

Query: 224 ERMPSFG-CDPDALTYSSMIDA-YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
           E     G   P  +   +++ A + R   + M     +  ++  ++ D   F++++ ++ 
Sbjct: 583 EEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKH-GYKPDLVLFNSMLSIFA 641

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
               +D    +   ++  G++P+++TYN+L+D   R    W+ + I K +  +G  P+  
Sbjct: 642 KNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLV 701

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           +Y ++++ + R    ++ +    EM   G++  +  YNT +A  +  G   E  E+   M
Sbjct: 702 SYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYM 761

Query: 402 KSSENCQPDSWTFSSMITICSCRGK 426
               +C+P+  T+  ++    C+GK
Sbjct: 762 -IQHDCRPNELTY-KIVVDGYCKGK 784



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 41/82 (50%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  +K F +   + +A R   +M   G++P  VT++T ++      + ++  E  
Sbjct: 699 DLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVI 758

Query: 224 ERMPSFGCDPDALTYSSMIDAY 245
             M    C P+ LTY  ++D Y
Sbjct: 759 SYMIQHDCRPNELTYKIVVDGY 780



 Score = 38.9 bits (89), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 40/86 (46%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  M ++ +  +  K E +   +   G KPD V+++T+I       L  +A+   
Sbjct: 664 DLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTL 723

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAG 249
             M   G  P  +TY++ +  Y   G
Sbjct: 724 SEMTISGIRPCIVTYNTFVAGYSGKG 749


>gi|410110123|gb|AFV61141.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           macrophylla]
          Length = 381

 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 174/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 23  AISIFS-RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL 81

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 82  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 139

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 140 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 199

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++   
Sbjct: 200 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 259

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG   +
Sbjct: 260 ERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKD 314

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I    K ++  +VV   N++  LG  PD      +LN
Sbjct: 315 ITVFERMIHLLSKXKKYSNVVEVFNKMRGLGYFPDSDVIAXVLN 358



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  + ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 163 AIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 222

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 223 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 278

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 279 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKXKKYSNVVEVF 338

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ +  A +L AYG+ +  +    VY EM+E G
Sbjct: 339 NKMRGLGYFPDSDVIAXVLNAYGKLQEFDKANDVYMEMQEVG 380



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 127/275 (46%), Gaps = 9/275 (3%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 113 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 172

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SMI  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 173 KNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 230

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 231 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 289

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F  M+    
Sbjct: 290 LAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLLSKXKKYSNVVEVFNKMRGL-G 345

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
             PDS   + ++       +  +A  ++ EM E G
Sbjct: 346 YFPDSDVIAXVLNAYGKLQEFDKANDVYMEMQEVG 380


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 164/325 (50%), Gaps = 1/325 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +    K R +DKA+ +   M+  GV+PDNVT++TLI          +AV  F+
Sbjct: 246 VVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFK 305

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M S G  P+ +T S+ +    + G +E A   +D    +  +++  ++STL+  Y TAG
Sbjct: 306 EMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAG 365

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                 N++  M   G+ PN   +N L++   +     +   I+++M   GL+P+  TY 
Sbjct: 366 CLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYL 425

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +++ A+ R    +D +  +  M +KG++ +  +Y  L+      G   +A E+  +++ +
Sbjct: 426 AVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIR-N 484

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +   P   +F+S+I      G+V EA+ +F+ ++  G + ++ + TSLI  Y    +  +
Sbjct: 485 KGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSE 544

Query: 465 VVRALNRLPELGITPDDRFCGCLLN 489
             R  + +  +GI PD    G L+N
Sbjct: 545 AFRVHDAMVSVGIEPDIVTYGTLVN 569



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 159/362 (43%), Gaps = 19/362 (5%)

Query: 109 LDSCSATE--DDVFSVLRCLGDDFLEQDCVII------LNNMTNPDTAALALTYFTNKLK 160
           +D C      D  F+   CL    ++ D +++      L +    D A   L +   +L 
Sbjct: 110 IDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDVLFHRMPELG 169

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK-----PDNVT-FSTLISCARMNN 214
              + I Y+  +K    C D      L  D+L   VK     P NV  +ST++       
Sbjct: 170 CVPDAISYSTVLK--SVCDDGRSQWAL--DILRMAVKQGGGCPCNVVVYSTVVHGLFKEG 225

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
              +A + F  M   G  P+ +TY+S+I A  +A  V+ A G+  +      + D   ++
Sbjct: 226 KVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYN 285

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
           TLI  Y T G +   + +++EM + GV PN +T +  +  + +  R  + +  +  M   
Sbjct: 286 TLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAK 345

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G   N  +Y++LL  Y  A    D  +++  M   G+  +  ++N L+   A  G   EA
Sbjct: 346 GHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREA 405

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
             IFEDM+      PD  T+ ++I      G + +A   FN M++ G EPN  V   LIQ
Sbjct: 406 MFIFEDMQ-KRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQ 464

Query: 455 CY 456
            +
Sbjct: 465 GF 466



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 136/288 (47%), Gaps = 1/288 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y   ++ F    DL KAE L  ++ ++G+ P  ++F++LI+         +A   F+ +
Sbjct: 458 VYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMI 517

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G   D   ++S+ID Y   G +  AF ++D   +     D   + TL+      G  
Sbjct: 518 IRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRI 577

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  L ++ E+   GVKP   TY  +LD +  A R    K +++EM ++G++    TY+ L
Sbjct: 578 DDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSIL 637

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L    R    E+ ++V++++    ++  + + N +++        +EA  +F  +     
Sbjct: 638 LTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDY-G 696

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
             P   T++ M+      G V EAE +F+ ML++G  P    +  +++
Sbjct: 697 LVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPTSHFINVIVR 744



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/336 (20%), Positives = 157/336 (46%), Gaps = 5/336 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I Y+  +  +     L     LF+ M+  G+ P+   F+ L++      +  +A+  FE
Sbjct: 351 IISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFE 410

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGT 282
            M   G +PD LTY ++I A+ R G+++ A   ++   ++   ++PN   +  LI+ + T
Sbjct: 411 DMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKG--VEPNFAVYQCLIQGFCT 468

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G+      +  E++  G+ P ++++ +L++ + +  R ++ + I+  +   G   + N 
Sbjct: 469 HGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNI 528

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           + SL+  Y       +   V+  M   G++  +  Y TL+  C   G  D+   +F ++ 
Sbjct: 529 FTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELL 588

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
             +  +P ++T+  ++      G+ + A+ MF EM+E+G    +   + L+    +   T
Sbjct: 589 -HKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCT 647

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
           ++ +    +L  + +  D      +++ M +  + E
Sbjct: 648 EEAITVFQKLCAMNVKFDIVILNIMISKMFKARRRE 683



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 153/358 (42%), Gaps = 52/358 (14%)

Query: 182 DKAERLFDDMLDRGVK-PDNVTFSTLISCARMNNL------PNKAVEWFERMPSFGCDP- 233
           D A  LFD +L +  + P++V    L + AR          P  AV  F RM S G  P 
Sbjct: 39  DDAHHLFDGLLRQTAQVPESVLNGFLSALARAPASAALRDGPALAVALFNRM-STGTGPR 97

Query: 234 ----DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
                  TYS +ID   RA  +++AF  +     +  + D    S+L++    A   D  
Sbjct: 98  VALPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEA 157

Query: 290 LNV-YEEMKAIGVKPNMITYNNLLDTM---GRAK-------------------------- 319
           ++V +  M  +G  P+ I+Y+ +L ++   GR++                          
Sbjct: 158 VDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTV 217

Query: 320 --------RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
                   +  +   ++ EMT  G+ PN  TY S++ A  +AR  +    + R+M   G+
Sbjct: 218 VHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGV 277

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
           Q     YNTL+   + +G   +A  +F++M +S    P++ T S+ +      G++ EA 
Sbjct: 278 QPDNVTYNTLIHGYSTLGQWKQAVRMFKEM-TSRGVIPNTVTCSTFVAFLCKHGRIEEAR 336

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
             F+ ML  G + N+   ++L+  Y  A    D+    N +   GI P+      L+N
Sbjct: 337 EFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVN 394



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 112/249 (44%), Gaps = 1/249 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           + +A R+ D M+  G++PD VT+ TL++    N   +  +  F  +   G  P   TY  
Sbjct: 542 MSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGI 601

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           ++D    AG    A  ++         +    +S L+         +  + V++++ A+ 
Sbjct: 602 ILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMN 661

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           VK +++  N ++  M +A+R  + + ++  + D GL P   TY  ++    +    E+  
Sbjct: 662 VKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAE 721

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            V+  M + G+  +    N ++    + G   +A  I+      ++   ++ T S ++++
Sbjct: 722 GVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVKA-GIYMCRVDGKSILFEASTASMLLSL 780

Query: 421 CSCRGKVSE 429
            SC+GK  E
Sbjct: 781 FSCKGKHRE 789


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 182/375 (48%), Gaps = 9/375 (2%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI--SCARMNNLPNKA 219
           S  V  YN  +    K    ++A+ +F +ML  G+ PD+ T+ +L+  +C + + +  + 
Sbjct: 292 SPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETEN 351

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           +  F  M S    PD + +SSM+  + R+GN++ A   ++  +      D   ++ LI+ 
Sbjct: 352 I--FSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQG 409

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           Y   G     +N+  EM   G   +++TYN +L  + + K   +   ++ EMT+ GL P+
Sbjct: 410 YCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPD 469

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             T   L+  + +    ++ + ++++MKEK ++L V  YNTLL     VG  D A EI+ 
Sbjct: 470 SYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWA 529

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           DM S E   P   +FS ++     +G +SEA  +++EM+    +P + +  S+I+ Y ++
Sbjct: 530 DMVSKE-ILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRS 588

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE-LGKLVECVEKSNSKLGYVVK 518
               D    L ++   G  PD   C     ++    KEE + K    V+K   K G +V 
Sbjct: 589 GNASDGEIFLEKMISEGFVPD---CISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVP 645

Query: 519 LLLEEQDIEGDFKKE 533
            +     I   F +E
Sbjct: 646 DVFTYNSILHGFCRE 660



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 163/337 (48%), Gaps = 5/337 (1%)

Query: 151 ALTYFTNKLKASKEV---ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AL YF N +K +  +   ++Y + ++ + +   + +A  L ++ML +G   D VT++T++
Sbjct: 384 ALMYF-NSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTIL 442

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                  +  +A + F  M   G  PD+ T + +ID + + GN++ A  L+ + + ++ +
Sbjct: 443 HGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIK 502

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
           +D   ++TL+  +G  G+ D    ++ +M +  + P  I+++ L++ +       +   +
Sbjct: 503 LDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRV 562

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           + EM    + P      S+++ Y R+    D      +M  +G       YNTL+     
Sbjct: 563 WDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVK 622

Query: 388 VGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
                +AF + + M+  +    PD +T++S++       ++ EAEA+  +M+E G  P+ 
Sbjct: 623 EENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDR 682

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
              TSLI  +       +  R  + + + G +PDD+F
Sbjct: 683 STYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPDDKF 719



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/430 (21%), Positives = 185/430 (43%), Gaps = 50/430 (11%)

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           C  +   +  +I  + +A  +  A+  +   R++ + +  +A + LI      G  +   
Sbjct: 151 CGSNDSVFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAW 210

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            +Y+E+   GV  N+ T N +++ + +  +  +V T   E+ + G+ P+  TY +L+ AY
Sbjct: 211 RIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAY 270

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
                 E+   +   M  KG    V  YNT++      G  + A E+F +M  S    PD
Sbjct: 271 SSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS-GLSPD 329

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
           S T+ S++     +G   E E +F++M      P+L   +S++  + ++   D  +   N
Sbjct: 330 STTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFN 389

Query: 471 RLPELGITPDD--------RFC------------------GCLLNVMTQT-------PKE 497
            + E G+ PD+         +C                  GC ++V+T          ++
Sbjct: 390 SVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRK 449

Query: 498 ELGK----LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCL 553
            LG+      E  E+      Y + +L++     G+ +  A ELF  + +   K      
Sbjct: 450 MLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQN-AMELFKKMKEKRIK------ 502

Query: 554 IDLCVNLNLLENACKLLELGLTLEVYTDIQSR----SPTQWSLHLKSL-SLGAALTALHI 608
           +D+     LL+   K+ ++    E++ D+ S+    +P  +S+ + +L S G    A  +
Sbjct: 503 LDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRV 562

Query: 609 WINDLSKALE 618
           W   +SK+++
Sbjct: 563 WDEMISKSIK 572


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 150/295 (50%), Gaps = 10/295 (3%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLISCARMNNL 215
            ++  S  V+ +N  + +  K      A++LFD+MLD  GV PD  TF+ LI    MN++
Sbjct: 192 KEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSM 251

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--F 273
            ++   +F+ M  F CDPD +TY++++D   RAG V++A  +      +   + PN   +
Sbjct: 252 VDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTY 311

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT- 332
           +TLI+ Y    +    L++  EM + G+KPN ITYN L+  +  A++  ++K I + M  
Sbjct: 312 TTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVG 371

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
           D G  P+  T  +L++A+      E+  SV+ +M E  +Q     Y+ L+      G   
Sbjct: 372 DGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFR 431

Query: 393 EAFEIFEDMKSSE------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
            A E F+++   E       C+P    ++ M       GK  +AE +F ++++ G
Sbjct: 432 RAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG 486



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 170/357 (47%), Gaps = 27/357 (7%)

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY---DR 260
           +T++   ++   P KA+ +F  + + G   +  +Y  MI+  GR+ N+  A       ++
Sbjct: 96  TTVLQTLQLIRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEK 155

Query: 261 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
                 ++    F++LI+ YG AG F   + V++ MK IGV P+++T+N+LL  + +  R
Sbjct: 156 KSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGR 215

Query: 321 PWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
               K ++ EM D  G++P+  T+  L+R +      ++    ++EM        V  YN
Sbjct: 216 TSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYN 275

Query: 380 TLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           TL+      G    A  + + M K S N  P+  T++++I     +  ++EA ++  EM+
Sbjct: 276 TLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMV 335

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPDDRFCGCLLNVMTQTPKE 497
             G +PN     +LIQ   +AQ+ D +   L   + + G  PD     C LN + +    
Sbjct: 336 SRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDT----CTLNTLIKA-HC 390

Query: 498 ELGKLVEC-----------VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543
            +GKL E            V+  ++    +V+ L +     GDF++ A E F+ +++
Sbjct: 391 TMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQ----RGDFRR-AEEFFDELAE 442



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 142/303 (46%), Gaps = 10/303 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDR---GVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           Y + +++  + R+L+ A      +  +    VK  +  F++LI       L  ++++ F+
Sbjct: 130 YFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFK 189

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGT 282
            M   G  P  +T++S++    + G   MA  L+D   +  + + P+   F+ LI+ +  
Sbjct: 190 TMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLD-TYGVTPDTYTFNILIRGFCM 248

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNW 340
               D     ++EM      P+++TYN L+D + RA +      + K M      LSPN 
Sbjct: 249 NSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNV 308

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY +L+R Y   +   + LS+  EM  +G++ +   YNTL+    +    D+  EI E 
Sbjct: 309 VTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEG 368

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M       PD+ T +++I      GK+ EA ++F +M E   +P+    + L++     Q
Sbjct: 369 MVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSL--CQ 426

Query: 461 RTD 463
           R D
Sbjct: 427 RGD 429



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 127/293 (43%), Gaps = 10/293 (3%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  V+ Y   ++ +   +D+ +A  L  +M+ RG+KP+ +T++TLI         +K  E
Sbjct: 305 SPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKE 364

Query: 222 WFERMPS-FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
             E M    G  PD  T +++I A+   G +E AF ++++    + + D   +S L++  
Sbjct: 365 ILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSL 424

Query: 281 GTAGNFDGCLNVYEEMKA-------IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
              G+F      ++E+         +G KP +  YN + + +    +  + + +++++  
Sbjct: 425 CQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMK 484

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
            G + +  +Y +L+  + R    E    +   M  +        Y  ++      G    
Sbjct: 485 RG-TQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVL 543

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           A +  E M  S +  P +  F S++     +G   E+ ++   MLE     N+
Sbjct: 544 AHKSLEKMLKSSHL-PTTAIFHSILAALVEKGCAHESASLVKLMLERRIRQNI 595



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 68/328 (20%), Positives = 125/328 (38%), Gaps = 49/328 (14%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDML-DRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           I YN  ++   + + LDK + + + M+ D G  PD  T +TLI          +A   FE
Sbjct: 344 ITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFE 403

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD------------------------- 259
           +M      PD+ TYS ++ +  + G+   A   +D                         
Sbjct: 404 KMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMF 463

Query: 260 ----------------RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
                           R   ++   DP ++ TLI  +   G  +   ++   M      P
Sbjct: 464 EYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVP 523

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           +  TY  ++D + +   P       ++M  +   P    + S+L A        ++ S+ 
Sbjct: 524 DAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKGCAHESASLV 583

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK----SSENCQPDSWTFSSMIT 419
           + M E+ ++ ++ L      M   V +  ++ ++ E  K    S E  Q       S + 
Sbjct: 584 KLMLERRIRQNIDLSTH--TMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVI 641

Query: 420 ICSCRG-KVSEAEAMFNEMLEAGFEPNL 446
              C+  KVSEA A++ E++E G +  L
Sbjct: 642 SGLCKAHKVSEAFALYYELVEKGMQHRL 669


>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
          Length = 1443

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 183/392 (46%), Gaps = 14/392 (3%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDT--------AALALTYFTNKLKASKEVILY 168
           DD   +L  + D  +E D ++  N + N            AL L +   +     + I Y
Sbjct: 238 DDARQLLDAMRDQDIEPD-LVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITY 296

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +    +  +LD A  +F++M+    +PD  T++ ++S         +A   F+ +  
Sbjct: 297 NTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVE 356

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  PDA+TY+S++ A+ + G+VE    + +      +R D   ++T+I +YG  G  D 
Sbjct: 357 KGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDL 416

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L +Y+EM+AIG  P+ +TY  L+D++G+  R  +   + +EM D GL P   T+++L+ 
Sbjct: 417 ALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALIC 476

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           AY ++   +D    +  M E G++     Y  +L + A    T +   ++  M   +  +
Sbjct: 477 AYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAM-IKDGYK 535

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD   +  ++   +   +  E E +  +M EA FE N  V++S++    KA+        
Sbjct: 536 PDDGLYQVLLAALAKGNEHDEIEGVIQDM-EAVFEMNPLVISSILI---KAECISQGASL 591

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
           L R    G  PD +    +L+   +  K E G
Sbjct: 592 LKRACLQGYEPDGKSLLSILDAYEKMGKHEKG 623



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 167/348 (47%), Gaps = 5/348 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALA   F    +    V ++N  M V+ +    D A +L D M D+ ++PD V+F+TLI+
Sbjct: 205 ALAEDVFLRFAREGATVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLIN 264

Query: 209 CARMNN---LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
            AR  +       A+E    +   G  PDA+TY+++I A  +  N++ A  +++     +
Sbjct: 265 -ARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASE 323

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
            R D   ++ ++ ++G  G       +++E+   G +P+ +TYN+LL    +     +V+
Sbjct: 324 CRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVE 383

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +E+   G   +  TY +++  YG+    +  L +Y EM+  G       Y  L+   
Sbjct: 384 RVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSL 443

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
             +    EA ++ E+M  +   +P   TFS++I   +  G+  +AE  F+ M+E+G +P+
Sbjct: 444 GKMDRISEAGKVLEEMADA-GLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPD 502

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
                 ++  + ++  T  ++     + + G  PDD     LL  + +
Sbjct: 503 RLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAK 550



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 118/556 (21%), Positives = 231/556 (41%), Gaps = 51/556 (9%)

Query: 167  LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
            ++N  +  + +    + A  +FD M+ +G  P   + + ++    ++   ++     + +
Sbjct: 784  IWNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQEL 843

Query: 227  PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR--------------------NEKW 266
                      T   M++A+ +AG+V     +Y+  +                    N+++
Sbjct: 844  QDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRF 903

Query: 267  R---------------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
            R                D    +TL+ +Y   GNFD  + VY  +   G++P+  TYN L
Sbjct: 904  RDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTL 963

Query: 312  LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
            +    R  RP +  T+  EM   GL+P   +Y  LL A G+A+  E    ++ EM+ KG 
Sbjct: 964  IVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGY 1023

Query: 372  QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
            +L+ ++Y+ ++ +  +     +A  +   MK  +  +P   T   ++T     G   EAE
Sbjct: 1024 RLNRSIYHMMMKIYRNARNHSKAEHLLSAMKE-DGIEPTIATMHILMTSYGTSGHPDEAE 1082

Query: 432  AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCLL 488
             + N +  +  E +    ++++  Y    R  D    + +L E+   G+ PD +     +
Sbjct: 1083 KVLNSLKSSNLEISTLPYSTVLDAY---LRNRDYSLGITKLLEMKRDGVEPDHQVWTSFI 1139

Query: 489  NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT--ELFNSISKDVK 546
               +   + +   L+    KS    G+ + + L  +     F +  +  E   ++     
Sbjct: 1140 RAASLCEQTDDAILLL---KSLQDCGFDLPIRLLTERTSSLFTEVDSFLEKLGTLEDSAS 1196

Query: 547  KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTA 605
              + N L DL         A  + +L +   +Y  +I       W   L+ LS GAAL A
Sbjct: 1197 LNFVNALEDLLWAFERRATASWIFQLAVKRSIYHHNIFRVEEKDWGADLRKLSAGAALVA 1256

Query: 606  LHIWINDLSKA-LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 664
            L +W++ +  A L+   E P  + + TG G  +Y+   L     ++L E+ +PF     +
Sbjct: 1257 LTLWLDQMQDASLQGAPESPKSIVLVTGEG--EYNMVSLRKTIRAYLLEMGSPFLPCRSR 1314

Query: 665  VGWFLTTEAAAKSWLE 680
             G F+    + K WL+
Sbjct: 1315 SGRFVVKAYSLKMWLK 1330



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 119/247 (48%), Gaps = 3/247 (1%)

Query: 164  EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
            ++++ N  + ++    + D+   ++  +L+ G++PD  T++TLI     N  P +     
Sbjct: 921  DLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLL 980

Query: 224  ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
              M   G  P   +Y  ++ A G+A   E A  L++  R + +R++ + +  ++K+Y  A
Sbjct: 981  YEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNA 1040

Query: 284  GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
             N     ++   MK  G++P + T + L+ + G +  P + + +   +  + L  +   Y
Sbjct: 1041 RNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPY 1100

Query: 344  ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +++L AY R R     ++   EMK  G++    ++ + +   +    TD+A  +   +KS
Sbjct: 1101 STVLDAYLRNRDYSLGITKLLEMKRDGVEPDHQVWTSFIRAASLCEQTDDAILL---LKS 1157

Query: 404  SENCQPD 410
             ++C  D
Sbjct: 1158 LQDCGFD 1164



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/164 (18%), Positives = 71/164 (43%)

Query: 149  ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
               L Y   K   + ++  Y + +    K +  ++A+ LF++M  +G + +   +  ++ 
Sbjct: 976  GFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMK 1035

Query: 209  CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
              R     +KA      M   G +P   T   ++ +YG +G+ + A  + +  ++    I
Sbjct: 1036 IYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEI 1095

Query: 269  DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
                +ST++  Y    ++   +    EMK  GV+P+   + + +
Sbjct: 1096 STLPYSTVLDAYLRNRDYSLGITKLLEMKRDGVEPDHQVWTSFI 1139


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 177/363 (48%), Gaps = 4/363 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALA+     KL     ++  N  +  F     + +A  L D M++ G +PD VTF+TL+ 
Sbjct: 119 ALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVH 178

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               +N  ++AV   ERM   GC PD +TY ++I+   + G  ++A  L ++    K   
Sbjct: 179 GLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEA 238

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +ST+I       + D  LN++ EM   G++P++ TY++L+  +    R      + 
Sbjct: 239 DVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLL 298

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            +M +  ++PN  T+ SL+ A+ +     +   ++ EM ++ +  ++  YN+L+      
Sbjct: 299 SDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 358

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
              DEA +IF  M  S++C PD  T++++I   C  + KV +   +F +M   G   N  
Sbjct: 359 DRLDEAQQIFTLM-VSKDCLPDVVTYNTLINGFCKAK-KVVDGMELFRDMSRRGLVGNTV 416

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV-ECV 506
             T+LI  + +A   D+      ++   G+ P+      LL+ + +  K E   +V E +
Sbjct: 417 TYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 476

Query: 507 EKS 509
           +KS
Sbjct: 477 QKS 479



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 167/338 (49%), Gaps = 6/338 (1%)

Query: 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFS 204
           PD A L L     K K   +V++Y+  +    K R +D A  LF +M ++G++PD  T+S
Sbjct: 221 PDLA-LNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYS 279

Query: 205 TLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
           +LISC       + A      M     +P+ +T++S+IDA+ + G +  A  L+D     
Sbjct: 280 SLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR 339

Query: 265 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
              IDPN   +++LI  +      D    ++  M +    P+++TYN L++   +AK+  
Sbjct: 340 S--IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVV 397

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
               ++++M+  GL  N  TY +L+  + +A   ++   V+++M   G+  ++  YNTLL
Sbjct: 398 DGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLL 457

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
                 G  ++A  +FE ++ S+  +PD +T++ M       GKV +   +F  +   G 
Sbjct: 458 DGLCKNGKLEKAMVVFEYLQKSK-MEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGV 516

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +P++    ++I  + K    ++      ++ E G  PD
Sbjct: 517 KPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPD 554



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 146/283 (51%), Gaps = 1/283 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K +  V+ +N  +  F K   L +AE+LFD+M+ R + P+ VT+++LI+   M++  ++A
Sbjct: 305 KINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEA 364

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
            + F  M S  C PD +TY+++I+ + +A  V     L+          +   ++TLI  
Sbjct: 365 QQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHG 424

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +  A + D    V+++M + GV PN++TYN LLD + +  +  +   +++ +  + + P+
Sbjct: 425 FFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPD 484

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY  +     +A   ED   ++  +  KG++  V  YNT+++     G  +EA+ +F 
Sbjct: 485 IYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFI 544

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            MK  +   PDS T++++I      G  + +  +  EM    F
Sbjct: 545 KMK-EDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRF 586



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 141/301 (46%), Gaps = 3/301 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           LD+A  LF +M+     P  V FS L+S  A+M    +  + + E+M   G   +  TY+
Sbjct: 46  LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKF-DLVISFGEKMEILGVSHNLYTYN 104

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            MI+   R   +  A  +  +     +       ++L+  +         + + ++M  +
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G +P+ +T+  L+  + +  +  +   + + M   G  P+  TY +++    +    +  
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 224

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           L++  +M++  ++  V +Y+T++       + D+A  +F +M  ++  +PD +T+SS+I+
Sbjct: 225 LNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM-DNKGIRPDVFTYSSLIS 283

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                G+ S+A  + ++MLE    PN+    SLI  + K  +  +  +  + + +  I P
Sbjct: 284 CLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 343

Query: 480 D 480
           +
Sbjct: 344 N 344



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 113/232 (48%), Gaps = 1/232 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +  F K + +     LF DM  RG+  + VT++TLI      +  + A   F
Sbjct: 379 DVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVF 438

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           ++M S G  P+ +TY++++D   + G +E A  +++  +  K   D   ++ + +    A
Sbjct: 439 KQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKA 498

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +   +++  +   GVKP++I YN ++    +     +  T++ +M ++G  P+  TY
Sbjct: 499 GKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTY 558

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
            +L+RA+ R      +  + +EM+        + Y  +  M  D G  D+ F
Sbjct: 559 NTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDMLHD-GRLDKGF 609



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 61/126 (48%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ +  +  K K   ++  YN+  +   K   ++    LF  +  +GVKPD + ++T+IS
Sbjct: 469 AMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMIS 528

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 L  +A   F +M   G  PD+ TY+++I A+ R G+   +  L    R+ ++  
Sbjct: 529 GFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAG 588

Query: 269 DPNAFS 274
           D + + 
Sbjct: 589 DASTYG 594


>gi|255661172|gb|ACU25755.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 426

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 175/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S+   +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 63  AISIFS-RLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 179

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++   
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAY 299

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG   +
Sbjct: 300 ERSGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKD 354

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 355 ITVFERMIHLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALVLN 398



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 138/288 (47%), Gaps = 1/288 (0%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +  
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  ++ R +  ++  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL
Sbjct: 62  KAISIFSRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                 K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 148/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G + +  +  ++I  Y ++       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERSGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G D D + Y +MI AY R+G V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERSGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMCGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRSR-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 93/222 (41%), Gaps = 36/222 (16%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             +  +  +P+   Y +++  +G+A+   +  S+  EM+  G+                 
Sbjct: 68  SRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVT---------------- 111

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
                               P++ ++S+++T+     K  EA ++F EM E     +L  
Sbjct: 112 --------------------PNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTT 151

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
              +I  YG+     +  +    + ++GI P+      LL V
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRV 193



 Score = 39.7 bits (91), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 58/130 (44%), Gaps = 1/130 (0%)

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           +E+ +      Y+TL+      G  D A    + M+  +    D   +S++I +      
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ-DRVPGDLVLYSNLIELSRKLCD 59

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            S+A ++F+ +  + F P+L    ++I  +GKA+   +    ++ +   G+TP+      
Sbjct: 60  YSKAISIFSRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYST 119

Query: 487 LLNVMTQTPK 496
           LL +  +  K
Sbjct: 120 LLTMYVENKK 129


>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
          Length = 665

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 178/360 (49%), Gaps = 20/360 (5%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           + K   +V+ Y   M  +     ++  + +FD M+  GVKP+ V +++L+       +  
Sbjct: 181 RTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHR 240

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +A+  F  +   G  PD ++Y+S+++AYGR+   E A  ++++ +    + +  +++ LI
Sbjct: 241 EALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALI 300

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             YG+AG     + +  EM+  G++P++++ + LL   GR ++  +++TI +     G+ 
Sbjct: 301 DAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGID 360

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
            N   Y S +++Y      E  L +Y  M+E  ++     YN L++  + +G   E+   
Sbjct: 361 LNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRF 420

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY- 456
           FEDM  S+                   GK+SEAE+ F+ M ++G  P++   T+LIQ Y 
Sbjct: 421 FEDMVDSKVSSTK-------------EGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYN 467

Query: 457 --GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 513
             G  +R  D+ +    +   GI PD   C  L+    +  + E + +L+E ++K +  L
Sbjct: 468 AGGGWKRAWDLFK---EMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPL 524



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 143/314 (45%), Gaps = 12/314 (3%)

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEE 295
           Y  MI  Y R   V+ A GL+     ++WR  P+A  +++LI  +  AG +   +N+ E+
Sbjct: 14  YGMMIRLYARHNQVDQARGLFFEM--QEWRCKPDADIYNSLIHAHSRAGQWRWAINIMED 71

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M    + P   TYNN+++  G A    +   + K+MT+NG+ P+  T+  +L A      
Sbjct: 72  MLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQ 131

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTF 414
               +S +  MK   +       N ++     +G   EA E+F  M+     C PD  T+
Sbjct: 132 YSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTY 191

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +S++      G+V   +A+F+ M+  G +PN+    SL+  Y       + +   N + +
Sbjct: 192 TSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKK 251

Query: 475 LGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS----KLGYVVKLLLEEQDIEGDF 530
            G+ PD      LLN   ++ + E  + V    K NS    K+ Y    L++     G  
Sbjct: 252 NGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSY--NALIDAYGSAGML 309

Query: 531 KKEATELFNSISKD 544
            KEA  L + + KD
Sbjct: 310 -KEAVGLLHEMEKD 322



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 142/352 (40%), Gaps = 40/352 (11%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLD--------------------------------- 193
           +YN  +    +      A  + +DML                                  
Sbjct: 48  IYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKM 107

Query: 194 --RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
              GV PD VT + ++S  +     +KA+ +FE M       D  T + +I    + G  
Sbjct: 108 TENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQC 167

Query: 252 EMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
             A  L++  R  + +  P+   +++++  Y   G  + C  +++ M A GVKPN++ YN
Sbjct: 168 GEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYN 227

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
           +LL          +   I+  +  NGL P+  +Y SLL AYGR+   E    V+ +MK+ 
Sbjct: 228 SLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKN 287

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS-CRGKVS 428
             + +   YN L+      G   EA  +  +M+  +  QPD  + S+++  C  CR +++
Sbjct: 288 SCKPNKVSYNALIDAYGSAGMLKEAVGLLHEME-KDGIQPDVVSISTLLAACGRCR-QIT 345

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             E +       G + N     S I+ Y      +  +     + E  + PD
Sbjct: 346 RIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPD 397



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 143/316 (45%), Gaps = 3/316 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y + ++++ +   +D+A  LF +M +   KPD   +++LI           A+   E M
Sbjct: 13  IYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDM 72

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
                 P   TY+++I+A G AGN + A  L  +        D    + ++        +
Sbjct: 73  LRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQY 132

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS--PNWNTYA 344
              ++ +E MK   V  +  T N ++  + +  +  +   ++  M +      P+  TY 
Sbjct: 133 SKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYT 192

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           S++ +Y      E+  +++  M  +G++ ++  YN+LL   A  G   EA  IF  +K +
Sbjct: 193 SIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKN 252

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              +PD  +++S++       +  +A  +FN+M +   +PN     +LI  YG A    +
Sbjct: 253 -GLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKE 311

Query: 465 VVRALNRLPELGITPD 480
            V  L+ + + GI PD
Sbjct: 312 AVGLLHEMEKDGIQPD 327



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/366 (19%), Positives = 158/366 (43%), Gaps = 59/366 (16%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ YN  +  +       +A  +F+ +   G++PD V++++L++    +  P KA E F 
Sbjct: 223 IVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFN 282

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY-------------------------- 258
           +M    C P+ ++Y+++IDAYG AG ++ A GL                           
Sbjct: 283 KMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCR 342

Query: 259 ---------DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
                    + AR+    ++  A+++ IK Y + G+++  L +Y  M+   VKP+ +TYN
Sbjct: 343 QITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYN 402

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLS-----------------------PNWNTYASL 346
            L+    +  +  +    +++M D+ +S                       P+  TY +L
Sbjct: 403 ILISGSSKLGKYTESLRFFEDMVDSKVSSTKEGKLSEAESTFSSMKKSGCFPDVLTYTTL 462

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           ++AY      +    +++EM+  G+     + ++L+      G  +   ++ E MK  ++
Sbjct: 463 IQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMK-KKS 521

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
              +  ++  +I  C+       A  M   +  +    ++  L  ++   GK  +T++++
Sbjct: 522 IPLNQKSYFEIIASCTMIRDWKTASEMIEYLDSSLSSISVGTLNHVLNFLGKCGKTENMM 581

Query: 467 RALNRL 472
           +   ++
Sbjct: 582 KLFYKM 587



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 125/288 (43%), Gaps = 13/288 (4%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  +K +    D +KA  L+  M +  VKPD VT++ LIS +       +++ +FE 
Sbjct: 364 VAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFED 423

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M       D+   S+      + G +  A   +   +      D   ++TLI+ Y   G 
Sbjct: 424 MV------DSKVSST------KEGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGG 471

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           +    ++++EM+  G+ P+ I  ++L++   +   P +V  + + M    +  N  +Y  
Sbjct: 472 WKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYFE 531

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++ +    R  +    +   +      +SV   N +L      G T+   ++F  M +S 
Sbjct: 532 IIASCTMIRDWKTASEMIEYLDSSLSSISVGTLNHVLNFLGKCGKTENMMKLFYKMVTSC 591

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           +    S T++ ++      GK  +   +   M ++G  P L++  +++
Sbjct: 592 STVGLS-TYAVVLRNLLVVGKWRKYIEVLQWMEDSGVHPTLYMFQNVL 638


>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 179/376 (47%), Gaps = 7/376 (1%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVI-LYNVTMKVFRKCRDLDKAERLFDDMLDRGV 196
           IL+ +   +  ALA+  F     A    + +YN  M V+ +     K + L D M  RG 
Sbjct: 226 ILSVLGKANQEALAVEIFARAEAAXGNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGC 285

Query: 197 KPDNVTFSTLISCARMNN---LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           +PD V+F+TLI+ AR+ +   + N A+E    +   G  PD +TY+++I A  R  N+E 
Sbjct: 286 EPDLVSFNTLIN-ARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEE 344

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  +Y+     + + D   ++ +I +YG  G       +++++++ G  P+ +TYN+LL 
Sbjct: 345 AVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLY 404

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
              R     +VK I ++M   G   +  TY +++  YG+    +    +Y +MK  G   
Sbjct: 405 AFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSP 464

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
               Y  L+          EA E+  +M ++   +P   TFS++I   +  GK  EAE  
Sbjct: 465 DAVTYTVLIDSLGKANMIKEAAEVMSEMLNA-XVKPTLRTFSALICGYAKAGKRVEAEET 523

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           F+ ML +G +P+    + ++    +   +   ++    +      PD      +L V+ +
Sbjct: 524 FDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGK 583

Query: 494 TPKEE-LGKLVECVEK 508
             +EE + K+V+ +E+
Sbjct: 584 ENREEDVHKVVKDMEE 599



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 140/684 (20%), Positives = 268/684 (39%), Gaps = 104/684 (15%)

Query: 97   TRYNSLVKLAADLDSCSATEDDVFSVLRCLG---DDFLEQDCVIILNNMTNPDTAALALT 153
            T Y SL+ L  + +   A    +FS +R  G    D L +  V+    M  P+TA   + 
Sbjct: 709  TMYESLL-LCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLID 767

Query: 154  YFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
                K     +V ++   ++ + K +   KAE L   +  +    D   ++ LI     +
Sbjct: 768  QAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAAS 827

Query: 214  NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
                +A   F  M   G  P   + + ++ A    G ++  + +    ++  ++I  ++ 
Sbjct: 828  GCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSI 887

Query: 274  STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM-- 331
            + ++  +  AGN      +Y+ MKA G  P M  Y  ++  + + KR   V+ +  EM  
Sbjct: 888  TLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEV 947

Query: 332  ---------------------------------TDNGLSPNWNTYASLLRAYGRARYGED 358
                                              + GL P+ +TY +L+  Y R R  E+
Sbjct: 948  AXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEE 1007

Query: 359  TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
             LS+  EM+  G++  +  Y +L++    +   ++A E+FE + S E C+ D   +  M+
Sbjct: 1008 GLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKE-CKLDRSFYHIMM 1066

Query: 419  TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVR-------- 467
             +    G  S+AE +   M EAG EP +  +  L+  Y   G+ +  + V+         
Sbjct: 1067 KMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLP 1126

Query: 468  ---------------------ALNRLPEL---GITPDDRFCGCLLNV--MTQTPKEELGK 501
                                 A+ +L E+   G+ PD R   C +    ++Q   E +  
Sbjct: 1127 LSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAI-V 1185

Query: 502  LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLN 561
            L++ +  +   L   ++LL E+ D          E    +  +    + N L DL     
Sbjct: 1186 LLKALRDTGFDLP--IRLLTEKSDSLVSEVDNCLEKLGPLEDNAAFNFVNALEDLLWAFE 1243

Query: 562  LLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA---- 616
            L   A  + +L +   +Y  D+   +   W    + +S G+AL  L +W++ +  +    
Sbjct: 1244 LRATASWVFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALVGLTLWLDHMQASFLIT 1303

Query: 617  --LESGEEF---------------PPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFH 659
              ++  EE+               P  + + TG    +Y+   L S  ++ L E+ +PF 
Sbjct: 1304 IFVQLMEEYFYFWQDASLQGYPLSPKSVVLITGTA--EYNMVSLNSTLKAFLWEMGSPFL 1361

Query: 660  DSPDKVGWFLTTEAAAKSWLESRS 683
                + G  +    + + WL+  S
Sbjct: 1362 PCKTRSGLLVAKAHSLRMWLKDSS 1385



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 139/323 (43%), Gaps = 12/323 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + YN  +  F +  ++DK + + +DM+  G   D +T++T+I         + A + +
Sbjct: 395 DAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLY 454

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  PDA+TY+ +ID+ G+A  ++ A  +     N   +     FS LI  Y  A
Sbjct: 455 SDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICGYAKA 514

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G        ++ M   G+KP+ + Y+ +LD + R     +   +Y+EM  +   P+   Y
Sbjct: 515 GKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALY 574

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
             +LR  G+    ED   V ++M+E  GM   V     +   C D         I     
Sbjct: 575 EVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLAI----- 629

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            S+ C+ D     S++      G+  EA  + + + E     +  +  +LI    KA + 
Sbjct: 630 -SQGCELDRENLLSILGSYGSSGRHLEARELLDFLREHSSGSHQLINEALIIMLCKAHQL 688

Query: 463 DDVVRALNRLPELGITPDDRFCG 485
            D +R   +  + G+     FCG
Sbjct: 689 GDALREYGKARDFGL-----FCG 706



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 138/308 (44%), Gaps = 7/308 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERM 226
           YN  + V+ +C    +A RLF D+  +G  PD VT+++L+ + AR  N+ +K  E  E M
Sbjct: 364 YNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNV-DKVKEICEDM 422

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G   D +TY+++I  YG+ G  ++AF LY   +      D   ++ LI   G A   
Sbjct: 423 VKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMI 482

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                V  EM    VKP + T++ L+    +A +  + +  +  M  +G+ P+   Y+ +
Sbjct: 483 KEAAEVMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVM 542

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L    R       + +Y+EM     +    LY  +L +       ++  ++ +DM+  E 
Sbjct: 543 LDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDME--EL 600

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
           C  +S    S++    C      A  M    +  G E +   L S++  YG + R  +  
Sbjct: 601 CGMNSQVICSILVKGEC---FDHAANMLRLAISQGCELDRENLLSILGSYGSSGRHLEAR 657

Query: 467 RALNRLPE 474
             L+ L E
Sbjct: 658 ELLDFLRE 665



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 93/413 (22%), Positives = 164/413 (39%), Gaps = 44/413 (10%)

Query: 99  YNSLVKLAA---DLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYF 155
           YNSL+   A   ++D      +D+  +    G D +  + +I +         A  L Y 
Sbjct: 399 YNSLLYAFAREGNVDKVKEICEDMVKM--GFGKDEMTYNTIIHMYGKRGQHDLAFQL-YS 455

Query: 156 TNKLKA-SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
             KL   S + + Y V +    K   + +A  +  +ML+  VKP   TFS LI       
Sbjct: 456 DMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICGYAKAG 515

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
              +A E F+ M   G  PD L YS M+D   R      A  LY       ++ D   + 
Sbjct: 516 KRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYE 575

Query: 275 TLIKLYGTAGNFDGCLNVYEEMK-----------AIGVK-------PNMITY-------- 308
            ++++ G     +    V ++M+           +I VK        NM+          
Sbjct: 576 VMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLAISQGCEL 635

Query: 309 --NNLLDTMGR---AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
              NLL  +G    + R  + + +   + ++    +     +L+    +A    D L  Y
Sbjct: 636 DRENLLSILGSYGSSGRHLEARELLDFLREHSSGSHQLINEALIIMLCKAHQLGDALREY 695

Query: 364 REMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
            + ++ G+   S T+Y +LL  C +     EA +IF DM+     +P    + SM+    
Sbjct: 696 GKARDFGLFCGSFTMYESLLLCCEENELFAEASQIFSDMRFY-GVEPSDHLYRSMVVTYC 754

Query: 423 CRGKVSEAEAMFNEMLEAGFE-PNLFVLTSLIQCYGKA---QRTDDVVRALNR 471
             G    A  + ++  E G    ++ + T +I+ YGK    Q+ + +V +L +
Sbjct: 755 KMGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQ 807


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 150/295 (50%), Gaps = 10/295 (3%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLISCARMNNL 215
            ++  S  V+ +N  + +  K      A++LFD+MLD  GV PD  TF+ LI    MN++
Sbjct: 192 KEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSM 251

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--F 273
            ++   +F+ M  F CDPD +TY++++D   RAG V++A  +      +   + PN   +
Sbjct: 252 VDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTY 311

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT- 332
           +TLI+ Y    +    L++  EM + G+KPN ITYN L+  +  A++  ++K I + M  
Sbjct: 312 TTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVG 371

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
           D G  P+  T  +L++A+      E+  SV+ +M E  +Q     Y+ L+      G   
Sbjct: 372 DGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFR 431

Query: 393 EAFEIFEDMKSSE------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
            A E F+++   E       C+P    ++ M       GK  +AE +F ++++ G
Sbjct: 432 RAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG 486



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 170/357 (47%), Gaps = 27/357 (7%)

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY---DR 260
           +T++   ++   P KA+ +F  + + G   +  +Y  MI+  GR+ N+  A       ++
Sbjct: 96  TTVLQTLQLIRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEK 155

Query: 261 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
                 ++    F++LI+ YG AG F   + V++ MK IGV P+++T+N+LL  + +  R
Sbjct: 156 KSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGR 215

Query: 321 PWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
               K ++ EM D  G++P+  T+  L+R +      ++    ++EM        V  YN
Sbjct: 216 TSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYN 275

Query: 380 TLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           TL+      G    A  + + M K S N  P+  T++++I     +  ++EA ++  EM+
Sbjct: 276 TLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMV 335

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPDDRFCGCLLNVMTQTPKE 497
             G +PN     +LIQ   +AQ+ D +   L   + + G  PD     C LN + +    
Sbjct: 336 SRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDT----CTLNTLIKA-HC 390

Query: 498 ELGKLVEC-----------VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543
            +GKL E            V+  ++    +V+ L +     GDF++ A E F+ +++
Sbjct: 391 TMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQ----RGDFRR-AEEFFDELAE 442



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 142/303 (46%), Gaps = 10/303 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDR---GVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           Y + +++  + R+L+ A      +  +    VK  +  F++LI       L  ++++ F+
Sbjct: 130 YFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFK 189

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGT 282
            M   G  P  +T++S++    + G   MA  L+D   +  + + P+   F+ LI+ +  
Sbjct: 190 TMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLD-TYGVTPDTYTFNILIRGFCM 248

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNW 340
               D     ++EM      P+++TYN L+D + RA +      + K M      LSPN 
Sbjct: 249 NSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNV 308

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY +L+R Y   +   + LS+  EM  +G++ +   YNTL+    +    D+  EI E 
Sbjct: 309 VTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEG 368

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M       PD+ T +++I      GK+ EA ++F +M E   +P+    + L++     Q
Sbjct: 369 MVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSL--CQ 426

Query: 461 RTD 463
           R D
Sbjct: 427 RGD 429



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 138/323 (42%), Gaps = 10/323 (3%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  V+ Y   ++ +   +D+ +A  L  +M+ RG+KP+ +T++TLI         +K  E
Sbjct: 305 SPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKE 364

Query: 222 WFERMPS-FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
             E M    G  PD  T +++I A+   G +E AF ++++    + + D   +S L++  
Sbjct: 365 ILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSL 424

Query: 281 GTAGNFDGCLNVYEEMKA-------IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
              G+F      ++E+         +G KP +  YN + + +    +  + + +++++  
Sbjct: 425 CQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMK 484

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
            G + +  +Y +L+  + R    E    +   M  +        Y  ++      G    
Sbjct: 485 RG-TQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVL 543

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A +  E M  S +  P +  F S++     +G   E+ ++   MLE     N+ + T  +
Sbjct: 544 AHKSLEKMLKSSHL-PTTAIFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTV 602

Query: 454 QCYGKAQRTDDVVRALNRLPELG 476
           +   K+   D     +  L E G
Sbjct: 603 RLLYKSGLQDKAFMTIGLLYENG 625


>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 150/294 (51%), Gaps = 10/294 (3%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLISCARMNNLP 216
           ++  S  V+ +N  + +  K      A++LFD+MLD  GV PD  TF+ LI    MN++ 
Sbjct: 264 EIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMV 323

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FS 274
           ++   +F+ M  F CDPD +TY++++D   RAG V++A  +      +   + PN   ++
Sbjct: 324 DEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYT 383

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT-D 333
           TLI+ Y    +    L++  EM + G+KPN ITYN L+  +  A++  ++K I + M  D
Sbjct: 384 TLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGD 443

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
            G  P+  T  +L++A+      E+  SV+ +M E  +Q     Y+ L+      G    
Sbjct: 444 GGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRR 503

Query: 394 AFEIFEDMKSSE------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           A E F+++   E       C+P    ++ M       GK  +AE +F ++++ G
Sbjct: 504 AEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG 557



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 165/354 (46%), Gaps = 43/354 (12%)

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
           +T++   ++   P KA+ +F  + + G   +  +Y  MI+  GR+ N+       + ARN
Sbjct: 189 TTVLQTLQLIRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNL-------NAARN 241

Query: 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
             + I+        K  G A +    + V++ MK IGV P+++T+N+LL  + +  R   
Sbjct: 242 FVFSIE--------KKSGGAES----IKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSM 289

Query: 324 VKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
            K ++ EM D  G++P+  T+  L+R +      ++    ++EM        V  YNTL+
Sbjct: 290 AKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLV 349

Query: 383 AMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
                 G    A  + + M K S N  P+  T++++I     +  ++EA ++  EM+  G
Sbjct: 350 DGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRG 409

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
            +PN     +LIQ   +AQ+ D +   L   + + G  PD     C LN + +     +G
Sbjct: 410 LKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDT----CTLNTLIKA-HCTMG 464

Query: 501 KLVEC-----------VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543
           KL E            V+  ++    +V+ L +     GDF++ A E F+ +++
Sbjct: 465 KLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQ----RGDFRR-AEEFFDELAE 513



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 19/183 (10%)

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY---------- 355
           ++   +L T+   + P +    ++ +   G + N  +Y  ++   GR+R           
Sbjct: 186 LSKTTVLQTLQLIRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARNFVFS 245

Query: 356 ------GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
                 G +++ V++ MKE G+  SV  +N+LL++    G T  A ++F++M  +    P
Sbjct: 246 IEKKSGGAESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTP 305

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVV 466
           D++TF+ +I        V E    F EM     +P++    +L+      GK +   +VV
Sbjct: 306 DTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVV 365

Query: 467 RAL 469
           + +
Sbjct: 366 KGM 368


>gi|255661148|gb|ACU25743.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 425

 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 174/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 63  AISIFS-RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 122 TMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 179

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++   
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAY 299

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG   +
Sbjct: 300 ERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKD 354

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 355 ITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+++ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G + +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 137/288 (47%), Gaps = 1/288 (0%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +  
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                 K+  +  +I+ EM +     +  T   ++  YG+    ++   ++  M++ G++
Sbjct: 122 TMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G D D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420


>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 152/316 (48%), Gaps = 7/316 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +K +     L+KAE +F +M   G  P  V ++  I          KAVE FERM 
Sbjct: 244 YALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMK 303

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C P   TY+ +I+ YG+A    MA  ++   R++K + +   F+ L+  +   G  +
Sbjct: 304 RDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCE 363

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++E+++  G++P++  YN L++   RA  P+    I+  M   G  P+  +Y  ++
Sbjct: 364 KAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMV 423

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            AYGRA   ED  +V+  MK  G+  ++  +  LL+  +  G   +  EI   M  S   
Sbjct: 424 DAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKS-GI 482

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---QRTDD 464
           +PD++  +SM+ +    G+  + E +   M +  +  ++     LI  YG+A    R ++
Sbjct: 483 KPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEE 542

Query: 465 VVRALNRLPELGITPD 480
           + R+   LP   + PD
Sbjct: 543 LFRS---LPARNLIPD 555



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 158/313 (50%), Gaps = 4/313 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI YN+ +  + +     KAE  + ++L+    P   T++ L+     + L  KA   F
Sbjct: 205 DVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVF 264

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M  +G  P A+ Y++ ID   + G+ + A  +++R + ++ +     ++ LI LYG A
Sbjct: 265 AEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKA 324

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                 L V+ EM++   KPN+ T+  L++   R     + + I++++ + GL P+   Y
Sbjct: 325 SKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAY 384

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ AY RA +      ++  M+  G +     YN ++      G  ++A  +FE MK 
Sbjct: 385 NALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKR 444

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---Q 460
                P   +   +++  S  GKV++ E + N+M ++G +P+ FVL S++  YG+    +
Sbjct: 445 L-GITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFE 503

Query: 461 RTDDVVRALNRLP 473
           + ++V+ A+ + P
Sbjct: 504 KMEEVLTAMEKGP 516



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 119/295 (40%), Gaps = 39/295 (13%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL + +     K    +  +   +  F +    +KAE +F+ + + G++PD   ++ L+ 
Sbjct: 330 ALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALME 389

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG---------------------- 246
                  P  A E F  M   GC+PD  +Y+ M+DAYG                      
Sbjct: 390 AYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITP 449

Query: 247 -------------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
                        RAG V     + ++      + D    ++++ LYG  G F+    V 
Sbjct: 450 TMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVL 509

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
             M+      ++ TYN L++  GRA    +++ +++ +    L P+  T+ S + AY R 
Sbjct: 510 TAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRR 569

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF----EDMKSS 404
           +     L V+ EM + G          LL+ C++     E   +     +DM++S
Sbjct: 570 KQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIRTMHKDMRTS 624


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 159/327 (48%), Gaps = 5/327 (1%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
           F   L     V+ YN  +  +    +++ A R+ D M  +G++PD+ T+ +LIS      
Sbjct: 274 FMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEG 333

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
              +A   F++M   G  P+A+TY+++ID Y   G++E AF   D    +      + ++
Sbjct: 334 RLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYN 393

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            L+      G      ++ +EM+  G+ P+ ITYN L++   R     +   ++ EM   
Sbjct: 394 LLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSK 453

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDE 393
           G+ P   TY SL+    R    ++   ++ ++ ++G+   V ++N ++   CA+ G  + 
Sbjct: 454 GIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCAN-GNVER 512

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           AF + ++M   ++  PD  TF++++    CR GKV EA  + +EM   G +P+     +L
Sbjct: 513 AFMLLKEM-DRKSVPPDEVTFNTLMQ-GRCREGKVEEARMLLDEMKRRGIKPDHISYNTL 570

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITP 479
           I  YG+     D  R  + +  +G  P
Sbjct: 571 ISGYGRRGDIKDAFRVRDEMLSIGFNP 597



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 148/325 (45%), Gaps = 5/325 (1%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           +L+ S  V  +N+ + V  K   L KA      M   G KP+ V+++T+I          
Sbjct: 242 RLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIE 301

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FST 275
            A    + M   G +PD+ TY S+I    + G +E A GL+D+    +  + PNA  ++T
Sbjct: 302 GARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKM--VEIGLVPNAVTYNT 359

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LI  Y   G+ +   +  +EM   G+ P++ TYN L+  +    R  +   + KEM   G
Sbjct: 360 LIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKG 419

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           + P+  TY  L+  Y R    +    ++ EM  KG++ +   Y +L+ + +      EA 
Sbjct: 420 IIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEAD 479

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           ++FE +   +   PD   F++M+      G V  A  +  EM      P+     +L+Q 
Sbjct: 480 DLFEKIL-DQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQG 538

Query: 456 YGKAQRTDDVVRALNRLPELGITPD 480
             +  + ++    L+ +   GI PD
Sbjct: 539 RCREGKVEEARMLLDEMKRRGIKPD 563



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 151/317 (47%), Gaps = 9/317 (2%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  + +F K   ++ A  L+ +M    +     TF+ +++         KA E+   M  
Sbjct: 218 NDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEG 277

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  P+ ++Y+++I  Y   GN+E A  + D  R +    D   + +LI      G  + 
Sbjct: 278 LGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEE 337

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLD---TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
              ++++M  IG+ PN +TYN L+D     G  +R +  +    EM   G+ P+ +TY  
Sbjct: 338 ASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYR---DEMVKKGIMPSVSTYNL 394

Query: 346 LLRA-YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           L+ A +   R GE    + +EM++KG+      YN L+   +  G   +AF++  +M  S
Sbjct: 395 LVHALFMEGRMGEAD-DMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEML-S 452

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +  +P   T++S+I + S R ++ EA+ +F ++L+ G  P++ +  +++  +      + 
Sbjct: 453 KGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVER 512

Query: 465 VVRALNRLPELGITPDD 481
               L  +    + PD+
Sbjct: 513 AFMLLKEMDRKSVPPDE 529



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 150/318 (47%), Gaps = 1/318 (0%)

Query: 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
           K  I++++ ++V  + R  D+A + F  M ++G+ P   T + ++S     N    A   
Sbjct: 177 KSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVL 236

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           +  M          T++ M++   + G ++ A           ++ +  +++T+I  Y +
Sbjct: 237 YAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSS 296

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            GN +G   + + M+  G++P+  TY +L+  M +  R  +   ++ +M + GL PN  T
Sbjct: 297 RGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVT 356

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +L+  Y      E   S   EM +KG+  SV+ YN L+      G   EA ++ ++M+
Sbjct: 357 YNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMR 416

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
             +   PD+ T++ +I   S  G   +A  + NEML  G EP     TSLI    +  R 
Sbjct: 417 -KKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRM 475

Query: 463 DDVVRALNRLPELGITPD 480
            +      ++ + G++PD
Sbjct: 476 KEADDLFEKILDQGVSPD 493



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 114/225 (50%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I YN+ +  + +C +  KA  L ++ML +G++P +VT+++LI      N   +A + F
Sbjct: 423 DAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLF 482

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E++   G  PD + +++M+D +   GNVE AF L      +    D   F+TL++     
Sbjct: 483 EKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCRE 542

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +    + +EMK  G+KP+ I+YN L+   GR         +  EM   G +P   TY
Sbjct: 543 GKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTY 602

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            +L++   + + G+    + +EM  KG+    + Y +L+    +V
Sbjct: 603 NALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNV 647



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 117/251 (46%), Gaps = 1/251 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ +        + +A+ +  +M  +G+ PD +T++ LI+         KA +    M 
Sbjct: 392 YNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEML 451

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S G +P  +TY+S+I    R   ++ A  L+++  ++    D   F+ ++  +   GN +
Sbjct: 452 SKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVE 511

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + +EM    V P+ +T+N L+    R  +  + + +  EM   G+ P+  +Y +L+
Sbjct: 512 RAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLI 571

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YGR    +D   V  EM   G   ++  YN L+         D A E+ ++M  ++  
Sbjct: 572 SGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEM-VNKGI 630

Query: 408 QPDSWTFSSMI 418
            PD  T+ S+I
Sbjct: 631 SPDDSTYLSLI 641


>gi|410110091|gb|AFV61125.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           micrantha]
          Length = 406

 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 50  DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVF 109

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 110 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 167

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 168 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSI 227

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 228 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 287

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 288 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEAKDITVFERMIHLLSKYKK 342

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 343 YSNVVEVFDKMRGLGYFPDSNVIAVVLN 370



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 141/286 (49%), Gaps = 1/286 (0%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V  D V +S LI  +R     +KA+  F R+   G  PD + Y++MI+ +G+A     A 
Sbjct: 12  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 71

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L    +      +  ++STL+ +Y     F   L+V+ EM+ I    ++ T N ++D  
Sbjct: 72  SLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 131

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           G+     +   ++  M   G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V
Sbjct: 132 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 191

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YN+++ +       ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F 
Sbjct: 192 VTYNSMIMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 250

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           ++  +G E +  +  ++I  Y +A       R L+ L      P D
Sbjct: 251 KLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRD 296



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 114/236 (48%), Gaps = 4/236 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  + ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 175 AIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 234

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 235 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 290

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 291 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEAKDITVFERMIHLLSKYKKYSNVVEVF 350

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
            +M   G  P+ N  A +L AYG+ +  +    VY EM+E G   S  ++  +L++
Sbjct: 351 DKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQEVGCVFSDEVHFQMLSL 406



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 131/278 (47%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 125 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 184

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SMI  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 185 KNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 242

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 243 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 301

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 302 LAGAGRI---EEATYVFRQAIDAGEAKDITVFERMIHLLSKYKKYSNVVEVFDKMRGL-G 357

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   + +  + +  GK+ E   A  ++ EM E G
Sbjct: 358 YFPDS---NVIAVVLNAYGKLQEFDKANDVYMEMQEVG 392


>gi|255661158|gb|ACU25748.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 426

 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 174/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 63  AISIFS-RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 179

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++   
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAY 299

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG   +
Sbjct: 300 ERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKD 354

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 355 ITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G + +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 137/288 (47%), Gaps = 1/288 (0%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +  
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                 K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G D D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420


>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
 gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
          Length = 886

 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 162/359 (45%), Gaps = 36/359 (10%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           +I Y   + ++ K   + KA  +  +M   G+K +N T+S LI+    +++  N A   F
Sbjct: 426 IISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFAN-AFSIF 484

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  PD   Y+ +++A+ + GN++ A  +++R + E+ +     F  +I+ +  A
Sbjct: 485 EDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVA 544

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+     +  + M+  G  P ++TYN L+  + R  +  +  ++  +M+  G++PN +TY
Sbjct: 545 GDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTY 604

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++R Y  +         + ++KE G++L V +Y TLL  C   G    A  +  +M  
Sbjct: 605 TIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSF 664

Query: 404 SE--------NCQPDSW--------------------------TFSSMITICSCRGKVSE 429
            +        N   D W                          TF+S I  C   G +  
Sbjct: 665 QKIPRNTFIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQR 724

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           AE +  EM + G +PN+   T+LI+ + +    D  ++    +   G+ PD+    CL+
Sbjct: 725 AENVIQEMADVGLKPNVKTFTTLIKGWARVSLPDRALKCFEEMKSAGLKPDEAAYHCLV 783



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 150/349 (42%), Gaps = 36/349 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           + + +  + K  D   A   F++M  RG++P+   F++L+    +      A+   E M 
Sbjct: 254 FGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAGDMRGALSCVEEMK 313

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S G +   +TYS +I  YG+  + + A  L+  A+ +   ++   +S +I  +  +GN D
Sbjct: 314 SEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMD 373

Query: 288 -----------------------------------GCLNVYEEMKAIGVKPNMITYNNLL 312
                                               CL V+E +K  G KP +I+Y  L+
Sbjct: 374 RAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLI 433

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           +   +  +  +   I KEM  +G+  N  TY+ L+  +       +  S++ +M + G+Q
Sbjct: 434 NLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQ 493

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
               +YN L+     +G  D A  IFE M+  E  QP + TF  +I   +  G +  A  
Sbjct: 494 PDRAIYNLLVEAFCKMGNMDRAIRIFERMQ-KERMQPSNRTFRPIIEGFAVAGDMKRAFD 552

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
             + M  +G  P +    +LI    +  + +  V  L+++   GI P++
Sbjct: 553 TLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNE 601



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 174/414 (42%), Gaps = 17/414 (4%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVL---RC 125
           K G  PK+            K   K+Y    N  + L    ++ S  ED + S L   R 
Sbjct: 438 KVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRA 497

Query: 126 LGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAE 185
           + +  +E  C      M N D A + +     K +       +   ++ F    D+ +A 
Sbjct: 498 IYNLLVEAFC-----KMGNMDRA-IRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAF 551

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
              D M   G  P  +T++ LI      +   KAV   ++M   G  P+  TY+ ++  Y
Sbjct: 552 DTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGY 611

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
             +G++  AF  + + +    ++D   + TL++    +G     L V  EM    +  N 
Sbjct: 612 AASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT 671

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
             YN L+D   R    W+   + K+M ++G+ PN +T+ S + A  +A   +   +V +E
Sbjct: 672 FIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQE 731

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M + G++ +V  + TL+   A V   D A + FE+MKS+   +PD   +  ++T    R 
Sbjct: 732 MADVGLKPNVKTFTTLIKGWARVSLPDRALKCFEEMKSA-GLKPDEAAYHCLVTSLLSRA 790

Query: 426 KVSEAE------AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV-RALNRL 472
            V E        ++  EM E     +L       +   K +RT   +  AL R+
Sbjct: 791 TVMEGSTYTGIFSVCREMFENDLTVDLRTAVHWSKWLHKIERTGGALTEALQRI 844



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 137/291 (47%), Gaps = 1/291 (0%)

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
            +R  KP    F  ++         + A   FE M + G +P+A  ++S++ AY  AG++
Sbjct: 243 FERIPKPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAGDM 302

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
             A    +  ++E   +    +S LI  YG   +     N+++E K      N I Y+N+
Sbjct: 303 RGALSCVEEMKSEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNGIIYSNI 362

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +    ++    + + + +EM ++G+    + Y S++  Y   +  +  L V+  +KE G 
Sbjct: 363 IHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKECGF 422

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
           + ++  Y  L+ +   VG   +A  I ++M+ S   + ++ T+S +I         + A 
Sbjct: 423 KPTIISYGCLINLYVKVGKVPKAIAISKEME-SHGIKHNNKTYSMLINGFIHLHDFANAF 481

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           ++F +M+++G +P+  +   L++ + K    D  +R   R+ +  + P +R
Sbjct: 482 SIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNR 532



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 79/383 (20%), Positives = 167/383 (43%), Gaps = 6/383 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y++ +  + K  D   A+ LF +   +    + + +S +I     +   ++A E   
Sbjct: 321 VVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVR 380

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G D     Y SM+  Y    + +    +++R +   ++    ++  LI LY   G
Sbjct: 381 EMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLINLYVKVG 440

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                + + +EM++ G+K N  TY+ L++            +I+++M  +GL P+   Y 
Sbjct: 441 KVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYN 500

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L+ A+ +    +  + ++  M+++ MQ S   +  ++   A  G    AF+  + M+ S
Sbjct: 501 LLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRS 560

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
             C P   T++++I     + +V +A ++ ++M  AG  PN    T +++ Y  +     
Sbjct: 561 -GCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGK 619

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL---GYVVKLLL 521
                 ++ E G+  D      LL    ++ + +   L    E S  K+    ++  +L+
Sbjct: 620 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQ-SALAVTREMSFQKIPRNTFIYNILI 678

Query: 522 EEQDIEGDFKKEATELFNSISKD 544
           +     GD   EA +L   + +D
Sbjct: 679 DGWARRGDV-WEAADLLKQMKED 700


>gi|255661164|gb|ACU25751.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 426

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSXF 137

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 195

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM + G+ PN  
Sbjct: 196 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSI 255

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+ +   LY T++      G    A  +  ++
Sbjct: 256 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL 315

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+      I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++
Sbjct: 316 K-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKK 370

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 371 YGNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 148/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+ + EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSXFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G + +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 136/288 (47%), Gaps = 1/288 (0%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +  
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                 K+  +  + + EM +     +  T   ++  YG+    ++   ++  M++ G++
Sbjct: 122 TMYVENKKFLEALSXFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G D D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 159/327 (48%), Gaps = 5/327 (1%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
           F   L     V+ YN  +  +    +++ A R+ D M  +G++PD+ T+ +LIS      
Sbjct: 252 FMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEG 311

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
              +A   F++M   G  P+A+TY+++ID Y   G++E AF   D    +      + ++
Sbjct: 312 RLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYN 371

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            L+      G      ++ +EM+  G+ P+ ITYN L++   R     +   ++ EM   
Sbjct: 372 LLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSK 431

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDE 393
           G+ P   TY SL+    R    ++   ++ ++ ++G+   V ++N ++   CA+ G  + 
Sbjct: 432 GIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCAN-GNVER 490

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           AF + ++M   ++  PD  TF++++    CR GKV EA  + +EM   G +P+     +L
Sbjct: 491 AFMLLKEM-DRKSVPPDEVTFNTLMQ-GRCREGKVEEARMLLDEMKRRGIKPDHISYNTL 548

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITP 479
           I  YG+     D  R  + +  +G  P
Sbjct: 549 ISGYGRRGDIKDAFRVRDEMLSIGFNP 575



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 148/325 (45%), Gaps = 5/325 (1%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           +L+ S  V  +N+ + V  K   L KA      M   G KP+ V+++T+I          
Sbjct: 220 RLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIE 279

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FST 275
            A    + M   G +PD+ TY S+I    + G +E A GL+D+    +  + PNA  ++T
Sbjct: 280 GARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKM--VEIGLVPNAVTYNT 337

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LI  Y   G+ +   +  +EM   G+ P++ TYN L+  +    R  +   + KEM   G
Sbjct: 338 LIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKG 397

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           + P+  TY  L+  Y R    +    ++ EM  KG++ +   Y +L+ + +      EA 
Sbjct: 398 IIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEAD 457

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           ++FE +   +   PD   F++M+      G V  A  +  EM      P+     +L+Q 
Sbjct: 458 DLFEKI-LDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQG 516

Query: 456 YGKAQRTDDVVRALNRLPELGITPD 480
             +  + ++    L+ +   GI PD
Sbjct: 517 RCREGKVEEARMLLDEMKRRGIKPD 541



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 151/317 (47%), Gaps = 9/317 (2%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  + +F K   ++ A  L+ +M    +     TF+ +++         KA E+   M  
Sbjct: 196 NDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEG 255

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  P+ ++Y+++I  Y   GN+E A  + D  R +    D   + +LI      G  + 
Sbjct: 256 LGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEE 315

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLD---TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
              ++++M  IG+ PN +TYN L+D     G  +R +  +    EM   G+ P+ +TY  
Sbjct: 316 ASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYR---DEMVKKGIMPSVSTYNL 372

Query: 346 LLRA-YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           L+ A +   R GE    + +EM++KG+      YN L+   +  G   +AF++  +M  S
Sbjct: 373 LVHALFMEGRMGEAD-DMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEM-LS 430

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +  +P   T++S+I + S R ++ EA+ +F ++L+ G  P++ +  +++  +      + 
Sbjct: 431 KGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVER 490

Query: 465 VVRALNRLPELGITPDD 481
               L  +    + PD+
Sbjct: 491 AFMLLKEMDRKSVPPDE 507



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 150/318 (47%), Gaps = 1/318 (0%)

Query: 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
           K  I++++ ++V  + R  D+A + F  M ++G+ P   T + ++S     N    A   
Sbjct: 155 KSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVL 214

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           +  M          T++ M++   + G ++ A           ++ +  +++T+I  Y +
Sbjct: 215 YAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSS 274

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            GN +G   + + M+  G++P+  TY +L+  M +  R  +   ++ +M + GL PN  T
Sbjct: 275 RGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVT 334

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +L+  Y      E   S   EM +KG+  SV+ YN L+      G   EA ++ ++M+
Sbjct: 335 YNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMR 394

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
             +   PD+ T++ +I   S  G   +A  + NEML  G EP     TSLI    +  R 
Sbjct: 395 -KKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRM 453

Query: 463 DDVVRALNRLPELGITPD 480
            +      ++ + G++PD
Sbjct: 454 KEADDLFEKILDQGVSPD 471



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 114/225 (50%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I YN+ +  + +C +  KA  L ++ML +G++P +VT+++LI      N   +A + F
Sbjct: 401 DAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLF 460

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E++   G  PD + +++M+D +   GNVE AF L      +    D   F+TL++     
Sbjct: 461 EKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCRE 520

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +    + +EMK  G+KP+ I+YN L+   GR         +  EM   G +P   TY
Sbjct: 521 GKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTY 580

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            +L++   + + G+    + +EM  KG+    + Y +L+    +V
Sbjct: 581 NALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNV 625



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 117/251 (46%), Gaps = 1/251 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ +        + +A+ +  +M  +G+ PD +T++ LI+         KA +    M 
Sbjct: 370 YNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEML 429

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S G +P  +TY+S+I    R   ++ A  L+++  ++    D   F+ ++  +   GN +
Sbjct: 430 SKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVE 489

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + +EM    V P+ +T+N L+    R  +  + + +  EM   G+ P+  +Y +L+
Sbjct: 490 RAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLI 549

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YGR    +D   V  EM   G   ++  YN L+         D A E+ ++M  ++  
Sbjct: 550 SGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEM-VNKGI 608

Query: 408 QPDSWTFSSMI 418
            PD  T+ S+I
Sbjct: 609 SPDDSTYLSLI 619


>gi|449459510|ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
 gi|449530101|ref|XP_004172035.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
          Length = 680

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 166/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M    V PD V++STL++    N    +A+   
Sbjct: 263 DIVAYNTMINVFGKAKLFREARFLLKEMRAVDVMPDTVSYSTLLNMFVENEKFLEALSVI 322

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+   V+ A  L+ R R  K  I+PN  +++T++++YG
Sbjct: 323 SEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWRMR--KIGIEPNVVSYNTILRVYG 380

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   +K N++TYN ++   G+     +   + ++M   G+ PN  
Sbjct: 381 EAELFGEAIHLFRLMQRKEIKQNVVTYNTMIKIYGKTLEHEKATNLVQDMQKRGIEPNAI 440

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+A   + +  ++++++  G ++   LY T++      G    A  +  ++
Sbjct: 441 TYSTIISIWGKAGKLDRSAMLFQKLRSSGAEIDQVLYQTMIVAYEKAGLVGHAKRLLHEL 500

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     QPD+   ++ ITI +  G++ EA  +F +  +AG   ++ V   +I  + + ++
Sbjct: 501 K-----QPDNIPRTTAITILAKAGRIEEATWVFRQAFDAGELKDISVFECMIDLFSRNKK 555

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +V+    ++  +G  P+      +LN
Sbjct: 556 HKNVLEVFEKMRNVGHFPNSDVIALVLN 583



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 106/485 (21%), Positives = 219/485 (45%), Gaps = 51/485 (10%)

Query: 36  YSKTSLQKRS-VSLQETQSSNPTKHSQNPQYPHGKTGSS--PKSYIWVNPKSPRASKLKE 92
           ++K  ++ R+ + +    SS+ +K     Q P  K+ ++  P+ Y   + + PR S   +
Sbjct: 33  FNKIKIKPRTRIPIFTASSSSTSKDIWRRQTPSEKSTTTLLPQKY-QRSGRRPRESSHLD 91

Query: 93  KSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCL-GDDFLEQDCVIILNNMTNPDTAALA 151
            S D     + +L A +   +  E +++SVL    G +   +  V +L+  ++   +   
Sbjct: 92  HSID-----MDELLASIGQ-TKNEQELYSVLSPYKGRELSMRFMVSLLSRESDWQRSLAI 145

Query: 152 LTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
           L +   +   +  V  YNV ++   + +  + A  LFD+M  R +  D  T+STLI+   
Sbjct: 146 LDWINEEALYTPSVYAYNVVLRNVLRAKQWELAHGLFDEMRQRALAADRYTYSTLITYFG 205

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
              + + A+ W ++M       D + YS++I+   +  +   A  ++ R +      D  
Sbjct: 206 KEGMFDAALSWLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDIV 265

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL------------------- 312
           A++T+I ++G A  F     + +EM+A+ V P+ ++Y+ LL                   
Sbjct: 266 AYNTMINVFGKAKLFREARFLLKEMRAVDVMPDTVSYSTLLNMFVENEKFLEALSVISEM 325

Query: 313 ----------------DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
                           D  G+     +   ++  M   G+ PN  +Y ++LR YG A   
Sbjct: 326 KEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWRMRKIGIEPNVVSYNTILRVYGEAELF 385

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            + + ++R M+ K ++ +V  YNT++ +       ++A  + +DM+     +P++ T+S+
Sbjct: 386 GEAIHLFRLMQRKEIKQNVVTYNTMIKIYGKTLEHEKATNLVQDMQ-KRGIEPNAITYST 444

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I+I    GK+  +  +F ++  +G E +  +  ++I  Y KA       R L+ L +  
Sbjct: 445 IISIWGKAGKLDRSAMLFQKLRSSGAEIDQVLYQTMIVAYEKAGLVGHAKRLLHELKQ-- 502

Query: 477 ITPDD 481
             PD+
Sbjct: 503 --PDN 505



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 155/336 (46%), Gaps = 52/336 (15%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     + +  + V+ YN  +K++ K  + +KA  L  DM  RG++P+ +T+ST+IS
Sbjct: 388 AIHLFRLMQRKEIKQNVVTYNTMIKIYGKTLEHEKATNLVQDMQKRGIEPNAITYSTIIS 447

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   +++   F+++ S G + D + Y +MI AY +AG V    G   R  +E  + 
Sbjct: 448 IWGKAGKLDRSAMLFQKLRSSGAEIDQVLYQTMIVAYEKAGLV----GHAKRLLHELKQP 503

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D    +T I +   AG  +    V+ +    G   ++  +  ++D   R K+   V  ++
Sbjct: 504 DNIPRTTAITILAKAGRIEEATWVFRQAFDAGELKDISVFECMIDLFSRNKKHKNVLEVF 563

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           ++M + G  PN +  A +L AYG+ R  +   ++Y EM+E+G              C   
Sbjct: 564 EKMRNVGHFPNSDVIALVLNAYGKLRDFDTADALYMEMQEEG--------------CV-- 607

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL-- 446
            +TDE    F+                 M+++   R      E++F E L++  +PN+  
Sbjct: 608 -FTDEVH--FQ-----------------MLSLYGARNDYKRLESLF-ERLDS--DPNINK 644

Query: 447 ----FVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                V+ S+   Y +  R+ D  R +NR+ ++ I+
Sbjct: 645 KELHLVVASI---YERGNRSKDASRIINRMNKIAIS 677



 Score = 38.9 bits (89), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 1/117 (0%)

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           SV  YN +L         + A  +F++M+       D +T+S++IT     G    A + 
Sbjct: 158 SVYAYNVVLRNVLRAKQWELAHGLFDEMRQ-RALAADRYTYSTLITYFGKEGMFDAALSW 216

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
             +M +     +L + ++LI+   K       +   +RL   GITPD      ++NV
Sbjct: 217 LQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDIVAYNTMINV 273


>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
            chloroplastic-like [Brachypodium distachyon]
          Length = 1285

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 123/556 (22%), Positives = 230/556 (41%), Gaps = 51/556 (9%)

Query: 167  LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
            ++N  +  + +    + A  +FD M+++G  P   + + ++    ++   ++     + +
Sbjct: 626  IWNALIHAYAESGLYEHARAVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIVQEL 685

Query: 227  PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA--------------------RNEKW 266
               G      T   M+DA+ +AG++     +Y+                      RN+++
Sbjct: 686  QDMGFKISKSTVILMLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKRY 745

Query: 267  R---------------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
            R                D    +TL+ +Y   GNFD  + VY  +   G++PN  TYN L
Sbjct: 746  RDVELMVVEMERAGFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTL 805

Query: 312  LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
            +    R  RP +  T+  EM   GL+P   +Y SLL A G+A+  E    ++ E++ KG 
Sbjct: 806  IVMYSRNLRPEEGFTLLNEMGKKGLTPKLESYKSLLAASGKAKLWEQAEQLFEEIRSKGY 865

Query: 372  QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
            +L+ +LY+ L+ +  D     +A ++   MK  +  +P   T   ++T     G   EAE
Sbjct: 866  RLNRSLYHMLMKIYRDACNHSKAEQLLASMK-EDGIEPTIATMHILMTSYGTAGHPDEAE 924

Query: 432  AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
             + N +  +  E +    +++   Y K    +  +  L  +   G+ PD +   C +   
Sbjct: 925  KVLNSLKSSSLEVSTLPYSTVFNAYLKNGDYNLGITKLLEMKADGVKPDHQVWTCFIRAA 984

Query: 492  TQTPKEE-----LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 546
            +   +       L  L +C      +    ++LL E             E  +++     
Sbjct: 985  SLCERTADAILLLNSLRDC------EFDLPIRLLTERTSSLLTEVSNFLEELDALEDSAA 1038

Query: 547  KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQ-WSLHLKSLSLGAALTA 605
              + N L DL         A  + +L +   +Y     R   + W    + LS GAALTA
Sbjct: 1039 LNFVNALEDLLWAFECRATASYVFQLAVDKSIYRHNVFRVVEKDWGADFRKLSAGAALTA 1098

Query: 606  LHIWINDLSKA-LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 664
            L +W++ +  A L+   E P  + + TG G  +Y+   L     ++L E+ +PF     +
Sbjct: 1099 LTLWLDQMQDASLQGSPESPKSIVLVTGEG--EYNMVSLRKTIRAYLLEMGSPFLPCKTR 1156

Query: 665  VGWFLTTEAAAKSWLE 680
             G F+    + K WL+
Sbjct: 1157 SGRFVAKSYSLKMWLK 1172



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 182/392 (46%), Gaps = 14/392 (3%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDT--------AALALTYFTNKLKASKEVILY 168
           DDV  +L  +    LE D ++  N + N           +A  L     ++    +VI Y
Sbjct: 80  DDVRQLLDAMRGQELEPD-LVSFNTLINARAKSGCLAPGSAFDLLLEVRQVGLRPDVITY 138

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +    +  +LD A  +F++M+    +PD  T++ ++S          A   F  +  
Sbjct: 139 NTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDAERMFRELVE 198

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  PDA+TY+S++ A+ + G+ +    + +      ++ D   ++T+I +YG  G  D 
Sbjct: 199 KGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLDL 258

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L +Y+EM+A+G  P+ +TY  L+D++G+  R      + +EM D GL P   T+++L+ 
Sbjct: 259 ALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSALIC 318

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           AY +    E+ +  +  M   G++     Y  +L + A  G   +   +++ M  ++  +
Sbjct: 319 AYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMM-NDGYR 377

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD+  +  M+   +   +  E EA+  +M E   + N  +++S++    KA+      + 
Sbjct: 378 PDNALYQVMLAALAKGNEYDEIEAVVQDM-EVVCQMNPQLVSSILI---KAECISQGAKL 433

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
           L +    G  PD +    +L+    T K E G
Sbjct: 434 LKKACLQGHEPDSKSLLSILDAYETTGKHEEG 465



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 150/339 (44%), Gaps = 40/339 (11%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI----------------- 207
           V ++N  M V+ +    D   +L D M  + ++PD V+F+TLI                 
Sbjct: 63  VQVFNAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSAFDL 122

Query: 208 ---------------------SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
                                +C++ +NL + AV  FE M +  C PD  TY++M+  +G
Sbjct: 123 LLEVRQVGLRPDVITYNTLISACSQGSNL-DDAVAVFEEMMASECRPDLWTYNAMVSVHG 181

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           R G  + A  ++     + ++ D   +++L+  +   G+ D    V EE+   G K + I
Sbjct: 182 RCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGI 241

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TYN ++   G+  R      +Y EM   G +P+  TY  L+ + G+     D   V  EM
Sbjct: 242 TYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEM 301

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
            + G++ ++  ++ L+   A  G  +EA   F  M +S   +PD   +  M+ I +  G 
Sbjct: 302 ADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVAS-GVKPDRLAYLVMLDIIARSGD 360

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           + +  A++  M+  G+ P+  +   ++    K    D++
Sbjct: 361 MRKLMALYQTMMNDGYRPDNALYQVMLAALAKGNEYDEI 399



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 144/315 (45%), Gaps = 5/315 (1%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           LY   +    +     +A ++F DM   G++P    + ++IS       P  A +  +  
Sbjct: 521 LYEYLITCLEEAEFFPEASQVFSDMQFIGIEPSRKIYESMISAYCKLGFPETAHQLMDEA 580

Query: 227 PSFGCDPDALTYS-SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
              G   + L+   +MI+AYG+    + A       + E   ID   ++ LI  Y  +G 
Sbjct: 581 VQSGISLNILSSRVTMIEAYGKIKLWQHAENFVKGLKQEP-SIDRRIWNALIHAYAESGL 639

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           ++    V++ M   G  P + + N ++  +    R  ++  I +E+ D G   + +T   
Sbjct: 640 YEHARAVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIVQELQDMGFKISKSTVIL 699

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSS 404
           +L A+ +A    + + +Y  MKE G   ++ +Y ++++ +C +  Y D    + E  ++ 
Sbjct: 700 MLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEMERA- 758

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              +PD    ++++ + +  G   +   +++ +LEAG EPN     +LI  Y +  R ++
Sbjct: 759 -GFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNLRPEE 817

Query: 465 VVRALNRLPELGITP 479
               LN + + G+TP
Sbjct: 818 GFTLLNEMGKKGLTP 832



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 103/211 (48%), Gaps = 4/211 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++ + N  + ++    + DK   ++  +L+ G++P+  T++TLI     N  P +     
Sbjct: 763 DLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNLRPEEGFTLL 822

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  P   +Y S++ A G+A   E A  L++  R++ +R++ + +  L+K+Y  A
Sbjct: 823 NEMGKKGLTPKLESYKSLLAASGKAKLWEQAEQLFEEIRSKGYRLNRSLYHMLMKIYRDA 882

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            N      +   MK  G++P + T + L+ + G A  P + + +   +  + L  +   Y
Sbjct: 883 CNHSKAEQLLASMKEDGIEPTIATMHILMTSYGTAGHPDEAEKVLNSLKSSSLEVSTLPY 942

Query: 344 ASLLRAYGRARYGEDTLSVYR--EMKEKGMQ 372
           +++  AY   + G+  L + +  EMK  G++
Sbjct: 943 STVFNAY--LKNGDYNLGITKLLEMKADGVK 971



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 68/399 (17%), Positives = 152/399 (38%), Gaps = 72/399 (18%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM- 226
           Y V + +  +  D+ K   L+  M++ G +PDN  +  +++     N  ++     + M 
Sbjct: 348 YLVMLDIIARSGDMRKLMALYQTMMNDGYRPDNALYQVMLAALAKGNEYDEIEAVVQDME 407

Query: 227 ------PSF------------------------GCDPDALTYSSMIDAYGRAGNVEMAFG 256
                 P                          G +PD+ +  S++DAY   G  E    
Sbjct: 408 VVCQMNPQLVSSILIKAECISQGAKLLKKACLQGHEPDSKSLLSILDAYETTGKHEEGLS 467

Query: 257 LYDRAR--------------------NEK------------------WRIDPNAFSTLIK 278
           L    R                    N+K                  +  D N +  LI 
Sbjct: 468 LLQFIREHVPSSCNLISECSIMLLCKNQKIAAAMQEYSSMQMLKCGSFGQDCNLYEYLIT 527

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
               A  F     V+ +M+ IG++P+   Y +++    +   P     +  E   +G+S 
Sbjct: 528 CLEEAEFFPEASQVFSDMQFIGIEPSRKIYESMISAYCKLGFPETAHQLMDEAVQSGISL 587

Query: 339 N-WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           N  ++  +++ AYG+ +  +   +  + +K++   +   ++N L+   A+ G  + A  +
Sbjct: 588 NILSSRVTMIEAYGKIKLWQHAENFVKGLKQEP-SIDRRIWNALIHAYAESGLYEHARAV 646

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           F D+   +   P   + + M+      G++ E   +  E+ + GF+ +   +  ++  + 
Sbjct: 647 F-DIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIVQELQDMGFKISKSTVILMLDAFT 705

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           KA    +V++  N + E G  P+      +++++ +  +
Sbjct: 706 KAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKR 744


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 157/317 (49%), Gaps = 3/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y+  +  F +   +D A +LF  M++ G  P+ VT++TL+S    N L ++A E  +
Sbjct: 77  VVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLD 136

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  PD  +Y +++    + G ++MA  +++   N     D  A+STLI      G
Sbjct: 137 EMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTG 196

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D    ++E+M+    +P+++T+  L+D + +  R  + + + + M D   +PN  TY+
Sbjct: 197 RLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYS 256

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKS 403
           SL+    +     D   V++ M  +G++ +V  YN+L+   C   G  D A  + E+M +
Sbjct: 257 SLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNG-VDSALLLMEEMTA 315

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +  C PD  T++++I      G+  EA  +F +M      P++   + LI  + K +R D
Sbjct: 316 T-GCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERID 374

Query: 464 DVVRALNRLPELGITPD 480
                 + + +  + PD
Sbjct: 375 MARTLFDDMLKQAVLPD 391



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 152/320 (47%), Gaps = 7/320 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +  F     +D A  L ++M   G  PD +T++TLI          +A   F 
Sbjct: 287 VVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFG 346

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M +  C+PD +TYS +I  + +   ++MA  L+D    +    D   FSTL++ Y  AG
Sbjct: 347 DMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAG 406

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D    + EEM A    P++ TY +L+D   +  R  + + + K M   G  PN  TY 
Sbjct: 407 LVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYT 466

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+ A+ RA        +  EM   G+Q +V  Y +L+      G  +EA ++ E ++  
Sbjct: 467 ALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERD 526

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ--CYGKAQRT 462
           ENC+ D + +  M+      G++S A  +   + ++G  P   +  +LI+  C GK    
Sbjct: 527 ENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGK---- 582

Query: 463 DDVVRALNRLPELGITPDDR 482
            ++ +A+  L E+ ++   R
Sbjct: 583 -ELGKAMEVLEEMTLSRKSR 601



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 145/317 (45%), Gaps = 36/317 (11%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   M    K   L +A+++ + M DR   P+ +T+S+LI           A E F
Sbjct: 216 DVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVF 275

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           +RM   G +P+ +TY+S+I  +     V                                
Sbjct: 276 KRMIVRGIEPNVVTYNSLIHGFCMTNGV-------------------------------- 303

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D  L + EEM A G  P++ITYN L+D + +  R  +   ++ +M     +P+  TY
Sbjct: 304 ---DSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITY 360

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+  + +    +   +++ +M ++ +   V  ++TL+    + G  D+A  + E+M +
Sbjct: 361 SCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVA 420

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S +C PD +T++S++      G++ EA  +   M + G +PN+   T+LI  + +A +  
Sbjct: 421 S-DCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPT 479

Query: 464 DVVRALNRLPELGITPD 480
              + L  +   G+ P+
Sbjct: 480 VAYKLLEEMVGNGVQPN 496



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 123/276 (44%), Gaps = 1/276 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI Y+  +  F K   +D A  LFDDML + V PD VTFSTL+       L + A    
Sbjct: 356 DVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLL 415

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M +  C PD  TY+S++D + + G +  A  +  R      + +   ++ LI  +  A
Sbjct: 416 EEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRA 475

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM-GRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           G       + EEM   GV+PN+ITY +L+    G        K + +   D     +   
Sbjct: 476 GKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFA 535

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y  ++    R       L +   +K+ G      +Y  L+          +A E+ E+M 
Sbjct: 536 YRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMT 595

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
            S   +P++  + ++I   +  G+  EA A+ +E+L
Sbjct: 596 LSRKSRPNAEAYEAVIQELAREGRHEEANALADELL 631



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 132/282 (46%), Gaps = 5/282 (1%)

Query: 201 VTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD 259
           +T++ +I    + N LP +A  +F +M   G  P+  TY+ +I+ + +   V  A+ L  
Sbjct: 8   ITWTIMIDGLCKANRLP-EATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLK 66

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
             +      +   +ST+I  +      D    ++ +M   G  PN++TYN LL  + R  
Sbjct: 67  EMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNG 126

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
              +   +  EM + GL P+  +Y +L+    +    +  L V+ +         V  Y+
Sbjct: 127 LMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYS 186

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEML 438
           TL+A     G  DEA ++FE M+ + +C+PD  TF++++    C+G ++ EA+ +   M 
Sbjct: 187 TLIAGLCKTGRLDEACKLFEKMREN-SCEPDVVTFTALMD-GLCKGDRLQEAQQVLETME 244

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +    PN+   +SLI    K  +  D      R+   GI P+
Sbjct: 245 DRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPN 286



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 135/302 (44%), Gaps = 8/302 (2%)

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           N+IT+  ++D + +A R  +  T + +M   G  PN  TY  L+  + +         + 
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
           +EMKE G+  +V  Y+T++         D A+++F  M  +  C P+  T++++++    
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVEN-GCMPNLVTYNTLLSGLCR 124

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
            G + EA  + +EM E G +P+ F   +L+    K  + D  ++           PD   
Sbjct: 125 NGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVA 184

Query: 484 CGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 542
              L+  + +T + +E  KL E + +++ +   V    L +   +GD  +EA ++  ++ 
Sbjct: 185 YSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETME 244

Query: 543 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAA 602
                   NC  ++    +L++  CK  ++    EV+  +  R      +   SL  G  
Sbjct: 245 DR------NCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFC 298

Query: 603 LT 604
           +T
Sbjct: 299 MT 300



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 2/207 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V  Y   +  F K   + +A R+   M  RG +P+ VT++ LI        P  A +
Sbjct: 424 SPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYK 483

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR-ARNEKWRIDPNAFSTLIKLY 280
             E M   G  P+ +TY S+I  +   G++E A  + +R  R+E  + D  A+  ++   
Sbjct: 484 LLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGL 543

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PN 339
              G     L + E +K  G  P    Y  L+  + + K   +   + +EMT +  S PN
Sbjct: 544 CRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPN 603

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREM 366
              Y ++++   R    E+  ++  E+
Sbjct: 604 AEAYEAVIQELAREGRHEEANALADEL 630


>gi|255661154|gb|ACU25746.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 426

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 174/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 63  AISIFS-RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 122 TMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 179

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++   
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSXGVDIDQVLYQTMIVAY 299

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG   +
Sbjct: 300 ERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKD 354

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 355 ITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 147/314 (46%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R      KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYXKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+++ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++   G + +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSXGVDIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 137/288 (47%), Gaps = 1/288 (0%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +  
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYX 61

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                 K+  +  +I+ EM +     +  T   ++  YG+    ++   ++  M++ G++
Sbjct: 122 TMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSXGVDID 288



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G D D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSXGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420


>gi|410110065|gb|AFV61112.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           citrodora]
          Length = 435

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 162/326 (49%), Gaps = 5/326 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 85  DLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVENKKFIEALSVF 144

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M    C  D  T + MID YG+ G  + A  L+   R      +  +++TL+++YG A
Sbjct: 145 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIETNVVSYNTLLRVYGDA 204

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
             F   ++++  M+   ++ N++TYN+++   G+     +   + +EM + G+ PN  TY
Sbjct: 205 ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITY 264

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           ++++  +G+    +    ++++++  G+++   LY T++      G    A  +  ++KS
Sbjct: 265 STIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKS 324

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +N   D     + I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++  
Sbjct: 325 PDNIPRD-----TAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKKYA 379

Query: 464 DVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +++  LG  PD      +LN
Sbjct: 380 NAVEVFDKMRGLGYFPDSNVIALVLN 405



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 141/294 (47%), Gaps = 1/294 (0%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LFD+M +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   
Sbjct: 3   LFDEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 62

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           +  +   A  ++ R +   +  D  A++ +I ++G A  F     +  EMK  GV PN  
Sbjct: 63  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTA 122

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           +Y+ LL      K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M
Sbjct: 123 SYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 182

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           ++ G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +
Sbjct: 183 RKMGIETNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLE 241

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             +A  +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 242 HEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 295



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 1/205 (0%)

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 2   GLFDEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 61

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +     +  +I+  +  +G +P+   Y +++  +G+A+   +  ++  EMK  G+  + 
Sbjct: 62  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNT 121

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 122 ASYSTLLTMYVENKKFIEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFW 180

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQ 460
            M + G E N+    +L++ YG A+
Sbjct: 181 GMRKMGIETNVVSYNTLLRVYGDAE 205



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 210 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 269

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + Y +MI AY RAG V  A     R  +E    
Sbjct: 270 IWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHA----KRLLHELKSP 325

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++    + K+      ++
Sbjct: 326 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKKYANAVEVF 385

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 386 DKMRGLGYFPDSNVIALVLNAYGKLHELDKANDVYMEMQEVG 427



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/213 (20%), Positives = 99/213 (46%), Gaps = 4/213 (1%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K+     V+ YN  ++V+       +A  LF  M  + ++ + VT+++++          
Sbjct: 184 KMGIETNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 243

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           KA    + M + G +P+++TYS++I  +G+ G ++ A  L+ + R+    ID   + T+I
Sbjct: 244 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 303

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             Y  AG       +  E+K+    P+ I  +  +  +  A R  +   ++++  D G  
Sbjct: 304 VAYERAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEV 359

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +   +  ++  + + +   + + V+ +M+  G
Sbjct: 360 KDITVFERMIHLFSKYKKYANAVEVFDKMRGLG 392



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 82/167 (49%), Gaps = 1/167 (0%)

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           ++ EM +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +  
Sbjct: 3   LFDEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 62

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
            +    +A  IF  +K S    PD   +++MI +        EA A+ +EM  AG  PN 
Sbjct: 63  KLCDYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNT 121

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
              ++L+  Y + ++  + +   + + E+    D   C  +++V  Q
Sbjct: 122 ASYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 168



 Score = 45.4 bits (106), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            ++ EM+E+ +      Y+TL+      G  D A    + M+  +    D   +S++I +
Sbjct: 2   GLFDEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ-DRVPGDLVLYSNLIEL 60

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
                  S+A ++F+ +  +GF P+L    ++I  +GKA+   +    ++ +   G+ P+
Sbjct: 61  SRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPN 120

Query: 481 DRFCGCLLNVMTQTPK 496
                 LL +  +  K
Sbjct: 121 TASYSTLLTMYVENKK 136


>gi|255661180|gb|ACU25759.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 426

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 175/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 63  AISIFS-RLKKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLL 121

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 179

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++   
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAY 299

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG   +
Sbjct: 300 ERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKD 354

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 355 ITVFERMIYLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  KSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 137/288 (47%), Gaps = 1/288 (0%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           DR + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +  
Sbjct: 2   DRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL
Sbjct: 62  KAISIFSRLKKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLL 121

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                 K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 288



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIYLFSKYKKYGNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
           D  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   DRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKKS-GFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTL 120

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQ 161



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 36/222 (16%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             +  +G  P+   Y +++  +G+A+   +  S+  EM+  G                  
Sbjct: 68  SRLKKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAG------------------ 109

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
                               P++ ++S+++T+     K  EA ++F EM E     +L  
Sbjct: 110 ------------------VMPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCFLDLTT 151

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
              +I  YG+     +  +    + ++GI P+      LL V
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRV 193



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           Y+TL+      G  D A    + M+  +    D   +S++I +       S+A ++F+ +
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQ-DRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
            ++GF P+L    ++I  +GKA+   +    ++ +   G+ P+      LL +  +  K
Sbjct: 71  KKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKK 129


>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
 gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
          Length = 961

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 161/322 (50%), Gaps = 11/322 (3%)

Query: 181 LDKAERLFDDMLDRGVKP--------DNVTFSTLISCARMNNLPNKAVEWFERMPSFGCD 232
           L +A  +FD +  R ++P        D  T++T+IS    +    +A+E    M S G D
Sbjct: 251 LKRAVEIFDWL--RNLEPSHELSSLCDLYTYTTMISQCGSHQQLRRALELVAEMRSRGID 308

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
            +  TYS++++   +A  +++A  +Y +   E    +   ++ LI +Y     ++  + V
Sbjct: 309 CNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVYVKRCQWEEAVKV 368

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
            + ++   ++  + TYN ++    ++ +P Q   +Y++M   G+ P+  TY +L+ AYG+
Sbjct: 369 LDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGK 428

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
               E  L ++R+M  +G + +V  Y++L++ C   G  + A E+F  M   ENC+P+  
Sbjct: 429 KGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHK-ENCKPNVV 487

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           TF+S+I  CS  G   +A  +F +M   G +P+      LI  Y +  +    ++A  ++
Sbjct: 488 TFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQM 547

Query: 473 PELGITPDDRFCGCLLNVMTQT 494
              G  PD      L+ V+ Q+
Sbjct: 548 QTQGCHPDAAVFNSLMEVLWQS 569



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 148/277 (53%), Gaps = 3/277 (1%)

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALT 237
           + L +A  L  +M  RG+  +  T+S L++ C + N L + A + +++M   GC P+ +T
Sbjct: 290 QQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANEL-DLAQDVYKQMLEEGCSPNLVT 348

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           Y+ +ID Y +    E A  + D    +  + +   ++T+I     +G  +  L VYE+M 
Sbjct: 349 YNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKML 408

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
           A GVKP+  TY  L+   G+  +  +   I+++M   G   N  TY+SL+ A  +A   E
Sbjct: 409 AAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWE 468

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
             L ++ +M ++  + +V  +N+L+A C+  G+ ++A E+FE M+ ++ C+PDS T+  +
Sbjct: 469 MALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQ-TQGCKPDSITYCGL 527

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           IT     G+   A   F +M   G  P+  V  SL++
Sbjct: 528 ITAYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLME 564



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 76/148 (51%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +  + K   ++KA  +F DM+ RG + + +T+S+LIS          A+E F +M 
Sbjct: 419 YTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMH 478

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C P+ +T++S+I A    G+ E A  L+++ + +  + D   +  LI  Y   G + 
Sbjct: 479 KENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWR 538

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTM 315
             L  +E+M+  G  P+   +N+L++ +
Sbjct: 539 RALKAFEQMQTQGCHPDAAVFNSLMEVL 566



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 2/136 (1%)

Query: 151 ALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL  F + ++    + VI Y+  +    K    + A  LF  M     KP+ VTF++LI+
Sbjct: 435 ALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIA 494

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    KA E FE+M + GC PD++TY  +I AY R G    A   +++ + +    
Sbjct: 495 ACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQTQGCHP 554

Query: 269 DPNAFSTLIKLYGTAG 284
           D   F++L+++   +G
Sbjct: 555 DAAVFNSLMEVLWQSG 570



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 2/102 (1%)

Query: 150 LALTYFT--NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           +AL  F+  +K      V+ +N  +         +KA  LF+ M  +G KPD++T+  LI
Sbjct: 469 MALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLI 528

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
           +         +A++ FE+M + GC PDA  ++S+++   ++G
Sbjct: 529 TAYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLMEVLWQSG 570



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 7/145 (4%)

Query: 344 ASLLRAYGRARYGEDTLSVYREMK--EKGMQLS----VTLYNTLLAMCADVGYTDEAFEI 397
           A+LL+   +  Y +  + ++  ++  E   +LS    +  Y T+++ C        A E+
Sbjct: 239 AALLKELAKQGYLKRAVEIFDWLRNLEPSHELSSLCDLYTYTTMISQCGSHQQLRRALEL 298

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
             +M+S      +  T+S+++ +C    ++  A+ ++ +MLE G  PNL     LI  Y 
Sbjct: 299 VAEMRS-RGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVYV 357

Query: 458 KAQRTDDVVRALNRLPELGITPDDR 482
           K  + ++ V+ L+ L +  I  + R
Sbjct: 358 KRCQWEEAVKVLDTLEKQAIQAEVR 382


>gi|410110125|gb|AFV61142.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           micromera]
          Length = 434

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 84  DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYXENKKFLEALSVF 143

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 144 SEMREIKCXLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 201

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 202 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSI 261

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 262 TYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 321

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 322 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKK 376

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +V+   +++  LG  PD      +LN
Sbjct: 377 YSNVIEVFDKMRGLGYFPDSNVIAVVLN 404



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 151/330 (45%), Gaps = 36/330 (10%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LFD+M  R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 61

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           +  +   A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  
Sbjct: 62  KXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTD--------------------------------- 333
           +Y+ LL      K+  +  +++ EM +                                 
Sbjct: 122 SYSTLLTMYXENKKFLEALSVFSEMREIKCXLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 334 --NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEH 241

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  +
Sbjct: 242 EKANNLIQEMQ-SRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQT 300

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +I  Y +A       R L+ L      P D
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKRPDNIPRD 330



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 1/205 (0%)

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELS 60

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +     +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  + 
Sbjct: 61  RKXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
           T Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 121 TSYSTLLTMYXENKKFLEALSVFSEMREIK-CXLDLTTCNIMIDVYGQLGMAKEADKLFW 179

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQ 460
            M + G EPN+    +L++ YG A+
Sbjct: 180 GMRKMGIEPNVVSYNTLLRVYGDAE 204



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  + ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 209 AIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 268

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 269 IWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 324

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 325 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVIEVF 384

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+ +  +    VY EM+E G
Sbjct: 385 DKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQEVG 426



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 131/278 (47%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 159 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 218

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SMI  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 219 KNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKXGKL 276

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 277 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 335

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 336 LAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVIEVFDKMRGL-G 391

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   + +  + +  GK+ E   A  ++ EM E G
Sbjct: 392 YFPDS---NVIAVVLNAYGKLQEFDKANDVYMEMQEVG 426


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 212/441 (48%), Gaps = 7/441 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I++N        +LAL      +K   E  ++  +  +  +   + +  A  L D M++ 
Sbjct: 50  ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 109

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G +PD +TF+TLI    ++N  ++AV   +RM   GC P+ +TY  +++   + G++++A
Sbjct: 110 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 169

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
           F L ++    K   D   F+T+I       + D  LN+++EM+  G++PN++TY++L+  
Sbjct: 170 FNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 229

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +    R      +  +M +  ++PN  T+ +L+ A+ +     +   ++ +M ++ +   
Sbjct: 230 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPD 289

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           +  YN+L+         D+A ++FE M  S++C PD  T++++I       +V +   +F
Sbjct: 290 IFTYNSLINGFCMHDRLDKAKQMFEFM-VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELF 348

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
            EM   G   +    T+LIQ        D+  +   ++   G+ PD      LL+ +   
Sbjct: 349 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 408

Query: 495 PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYC-- 550
            K E+  ++ + ++KS  KL   +   + E   +     +  +LF S+S K VK      
Sbjct: 409 GKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTY 468

Query: 551 NCLIDLCVNLNLLENACKLLE 571
           N +I    +  LL+ A  LL+
Sbjct: 469 NTMISGLCSKRLLQEAYALLK 489



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 171/349 (48%), Gaps = 9/349 (2%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           +++N +       LA     NK++A+K   +V+++N  +    K R +D A  LF +M  
Sbjct: 155 VVVNGLCKRGDIDLAFNLL-NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 213

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           +G++P+ VT+S+LISC       + A +    M     +P+ +T++++IDA+ + G    
Sbjct: 214 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 273

Query: 254 AFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           A  L+D     K  IDP+ F+  +LI  +      D    ++E M +    P++ TYN L
Sbjct: 274 AEKLHDDMI--KRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 331

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +    ++KR      +++EM+  GL  +  TY +L++        ++   V+++M   G+
Sbjct: 332 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
              +  Y+ LL    + G  ++A E+F+ M+ SE  + D + +++MI      GKV +  
Sbjct: 392 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE-IKLDIYIYTTMIEGMCKAGKVDDGW 450

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +F  +   G +PN+    ++I      +   +    L ++ E G  PD
Sbjct: 451 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPD 499



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 141/283 (49%), Gaps = 1/283 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K +  ++ +N  +  F K     +AE+L DDM+ R + PD  T+++LI+   M++  +KA
Sbjct: 250 KINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKA 309

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
            + FE M S  C PD  TY+++I  + ++  VE    L+    +     D   ++TLI+ 
Sbjct: 310 KQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 369

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
               G+ D    V+++M + GV P+++TY+ LLD +    +  +   ++  M  + +  +
Sbjct: 370 LFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 429

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
              Y +++    +A   +D   ++  +  KG++ +V  YNT+++         EA+ + +
Sbjct: 430 IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLK 489

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            MK  +   PDS T++++I      G  + +  +  EM    F
Sbjct: 490 KMK-EDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRF 531



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/286 (20%), Positives = 131/286 (45%), Gaps = 7/286 (2%)

Query: 198 PDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256
           P    F+ L+S  A+M    +  +   E+M   G   +  TY+ +I+ + R   + +A  
Sbjct: 8   PSIFEFNKLLSAIAKMKKF-DLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 66

Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           L  +     +       S+L+  Y         + + ++M  +G +P+ IT+  L+  + 
Sbjct: 67  LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 126

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS--VYREMKEKGMQLS 374
              +  +   +   M   G  PN  TY  ++   G  + G+  L+  +  +M+   ++  
Sbjct: 127 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVN--GLCKRGDIDLAFNLLNKMEAAKIEAD 184

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           V ++NT++       + D+A  +F++M+ ++  +P+  T+SS+I+     G+ S+A  + 
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEME-TKGIRPNVVTYSSLISCLCSYGRWSDASQLL 243

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           ++M+E    PNL    +LI  + K  +  +  +  + + +  I PD
Sbjct: 244 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPD 289



 Score = 45.8 bits (107), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 2/116 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR--DLDKAERLFDDMLDR 194
           I+L+ + N      AL  F    K+  ++ +Y  T  +   C+   +D    LF  +  +
Sbjct: 400 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 459

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           GVKP+ VT++T+IS      L  +A    ++M   G  PD+ TY+++I A+ R G+
Sbjct: 460 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 515


>gi|255661214|gb|ACU25776.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 426

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 174/353 (49%), Gaps = 13/353 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ KLK S    +++ YN  + VF K R   +A  L  +M   GV P+ V++STL+
Sbjct: 63  AISIFS-KLKRSGITPDLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTLL 121

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+    + A  L+   R  K  
Sbjct: 122 TMYVENKRFREALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWGMR--KMG 179

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   +  N++TYN ++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIVQNVVTYNTMMMIYGKTLEHEKAN 239

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++   
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRVSGIEIDQVLYQTMIVAY 299

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K   N   D+      I I +  G++ EA  +F + ++AG   +
Sbjct: 300 ERAGLVAHAKRLLHELKRPNNIPRDT-----AIHILAGAGRIEEATWVFRQAIDAGEVKD 354

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
           + V   +I  + K ++  +VV    ++  LG  PD      +LN   +  K E
Sbjct: 355 ITVFERMISLFSKYKKYTNVVEVFEKMRGLGYFPDSNVIAVVLNAYGKLHKFE 407



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 147/305 (48%), Gaps = 10/305 (3%)

Query: 185 ERLFDDML--------DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           E LFD  L        DR V  D V +S LI  +R     +KA+  F ++   G  PD +
Sbjct: 22  EGLFDGALSWLQKMEQDR-VPGDLVLYSNLIELSRKLCDYSKAISIFSKLKRSGITPDLV 80

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            Y+SMI+ +G+A     A  L    R      +  ++STL+ +Y     F   L+V+ EM
Sbjct: 81  AYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTLLTMYVENKRFREALSVFAEM 140

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           + I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LLR YG A   
Sbjct: 141 REIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELF 200

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            + + ++R M+ K +  +V  YNT++ +       ++A  + ++M+ +   +P+S T+S+
Sbjct: 201 GEAIHLFRLMQRKDIVQNVVTYNTMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYST 259

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R L+ L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRVSGIEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPN 319

Query: 477 ITPDD 481
             P D
Sbjct: 320 NIPRD 324



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 126/275 (45%), Gaps = 9/275 (3%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 153 NIMIDVYGQLDMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
                + +TY++M+  YG+    E A  L    +N    I+PN+  +ST+I ++G  G  
Sbjct: 213 KDIVQNVVTYNTMMMIYGKTLEHEKANNLIQEMQNRG--IEPNSITYSTIISIWGKVGKL 270

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    ++++++  G++ + + Y  ++    RA      K +  E+      P  +T   +
Sbjct: 271 DRAAMLFQKLRVSGIEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPNNIPR-DTAIHI 329

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++++ +         E+FE M+    
Sbjct: 330 LAGAGRI---EEATWVFRQAIDAGEVKDITVFERMISLFSKYKKYTNVVEVFEKMRGL-G 385

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
             PDS   + ++       K   A  ++ EM + G
Sbjct: 386 YFPDSNVIAVVLNAYGKLHKFENANGVYMEMQDEG 420


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 177/369 (47%), Gaps = 21/369 (5%)

Query: 118 DVFS---VLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKV 174
           DVFS   +L+ L D+   Q+ + +L+ M +                +  +V+ YN  +  
Sbjct: 162 DVFSYNNLLKGLCDENRSQEALELLHMMADDRGGG-----------SPPDVVSYNTVLNG 210

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F K  D DKA   + +MLDRG+ PD VT+S++I+        +KA+E    M   G  PD
Sbjct: 211 FFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 270

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNV 292
            +TY+S++  Y  +G  + A G   + R++   ++PN   +S+L+      G       +
Sbjct: 271 CMTYNSILHGYCSSGQPKEAIGTLKKMRSDG--VEPNVVTYSSLMNYLCKNGRSTEARKI 328

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           ++ M   G++P++ TY  LL          ++  +   M  NG+ P+ + +  L+ AY +
Sbjct: 329 FDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAK 388

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
               +  + V+ +M++ G+  +V  Y T++ +    G  D+A   FE M   E   P+  
Sbjct: 389 QEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQM-IDEGLTPNII 447

Query: 413 TFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            ++S+I  +C+C  K  +AE +  EML+ G   N     S+I  + K  R  +  +  + 
Sbjct: 448 VYTSLIHGLCTC-DKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDL 506

Query: 472 LPELGITPD 480
           +  +G+ PD
Sbjct: 507 MVRIGVKPD 515



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 149/320 (46%), Gaps = 6/320 (1%)

Query: 151 ALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ YF   +    +  +I+Y   +     C   DKAE L  +MLDRG+  + + F+++I 
Sbjct: 430 AMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIID 489

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    ++ + F+ M   G  PD +TY+++ID    AG ++ A  L     +   + 
Sbjct: 490 SHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKP 549

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   + TLI  Y      D  L +++EM + GV PN+ITYN +L  +   +R    K +Y
Sbjct: 550 DIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELY 609

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             +T +G     +TY  +L    +    ++ L +++ +    +QL    +N ++      
Sbjct: 610 VSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKC 669

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G  DEA ++F    S+    PD  T+S M      +G + E + +F  M E G   +  +
Sbjct: 670 GRMDEAKDLFA-AHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRM 728

Query: 449 LTSLIQCYGKAQRTDDVVRA 468
           L S+++   K  +  D+ RA
Sbjct: 729 LNSIVR---KLLQRGDITRA 745



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 135/307 (43%), Gaps = 11/307 (3%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFS-TLISCARMNNLPNKAVEWFERMPSFGCD---PDALT 237
           + A  +FD++L RG        +  L   AR +  P  AV  + RM   G     P   T
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVARHS--PAAAVSRYNRMARAGAGKVTPTVHT 94

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEM 296
           Y+ +I    RAG +++ F        + +R+D   F+ L+K L       D    V   M
Sbjct: 95  YAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRM 154

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN---GLSPNWNTYASLLRAYGRA 353
             +G  P++ +YNNLL  +    R  +   +   M D+   G  P+  +Y ++L  + + 
Sbjct: 155 TELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKE 214

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
              +   S Y EM ++G+   V  Y++++A        D+A E+   M  +    PD  T
Sbjct: 215 GDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMT 273

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           ++S++      G+  EA     +M   G EPN+   +SL+    K  R+ +  +  + + 
Sbjct: 274 YNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMT 333

Query: 474 ELGITPD 480
           + G+ PD
Sbjct: 334 KRGLEPD 340



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/416 (22%), Positives = 171/416 (41%), Gaps = 46/416 (11%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++  Y   ++ +     L +   L D M+  G++PD+  F+ LI         ++A+  F
Sbjct: 340 DIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVF 399

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M   G +P+ + Y ++ID   ++G+V+ A   +++  +E    +   +++LI    T 
Sbjct: 400 SKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTC 459

Query: 284 GNFDG-------------CLN----------------------VYEEMKAIGVKPNMITY 308
             +D              CLN                      +++ M  IGVKP++ITY
Sbjct: 460 DKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITY 519

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N L+D    A +  +   +   M   G+ P+  TY +L+  Y R    +D L++++EM  
Sbjct: 520 NTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVS 579

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G+  ++  YN +L        T  A E++  +  S   Q +  T++ ++          
Sbjct: 580 SGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKS-GTQLELSTYNIILHGLCKNNLTD 638

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           EA  MF  +     +        +I    K  R D+           G+ PD R    + 
Sbjct: 639 EALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMA 698

Query: 489 -NVMTQTPKEELGKLVECVEKSNSK-----LGYVVKLLLEEQDIEGDFKKEATELF 538
            N++ Q   EEL  L   +E++        L  +V+ LL+     GD  +  T LF
Sbjct: 699 ENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQ----RGDITRAGTYLF 750


>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Vitis vinifera]
          Length = 587

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 152/316 (48%), Gaps = 7/316 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +K +     L+KAE +F +M   G  P  V ++  I          KAVE FERM 
Sbjct: 206 YALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMK 265

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C P   TY+ +I+ YG+A    MA  ++   R++K + +   F+ L+  +   G  +
Sbjct: 266 RDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCE 325

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++E+++  G++P++  YN L++   RA  P+    I+  M   G  P+  +Y  ++
Sbjct: 326 KAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMV 385

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            AYGRA   ED  +V+  MK  G+  ++  +  LL+  +  G   +  EI   M  S   
Sbjct: 386 DAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKS-GI 444

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---QRTDD 464
           +PD++  +SM+ +    G+  + E +   M +  +  ++     LI  YG+A    R ++
Sbjct: 445 KPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEE 504

Query: 465 VVRALNRLPELGITPD 480
           + R+   LP   + PD
Sbjct: 505 LFRS---LPARNLIPD 517



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 158/313 (50%), Gaps = 4/313 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI YN+ +  + +     KAE  + ++L+    P   T++ L+     + L  KA   F
Sbjct: 167 DVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVF 226

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M  +G  P A+ Y++ ID   + G+ + A  +++R + ++ +     ++ LI LYG A
Sbjct: 227 AEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKA 286

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                 L V+ EM++   KPN+ T+  L++   R     + + I++++ + GL P+   Y
Sbjct: 287 SKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAY 346

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ AY RA +      ++  M+  G +     YN ++      G  ++A  +FE MK 
Sbjct: 347 NALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKR 406

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---Q 460
                P   +   +++  S  GKV++ E + N+M ++G +P+ FVL S++  YG+    +
Sbjct: 407 L-GITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFE 465

Query: 461 RTDDVVRALNRLP 473
           + ++V+ A+ + P
Sbjct: 466 KMEEVLTAMEKGP 478



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/310 (21%), Positives = 129/310 (41%), Gaps = 43/310 (13%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           +++N       + +AL  F +++++ K    +  +   +  F +    +KAE +F+ + +
Sbjct: 278 MLINLYGKASKSYMALKVF-HEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQE 336

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG------- 246
            G++PD   ++ L+        P  A E F  M   GC+PD  +Y+ M+DAYG       
Sbjct: 337 AGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHED 396

Query: 247 ----------------------------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
                                       RAG V     + ++      + D    ++++ 
Sbjct: 397 AQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLN 456

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
           LYG  G F+    V   M+      ++ TYN L++  GRA    +++ +++ +    L P
Sbjct: 457 LYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIP 516

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  T+ S + AY R +     L V+ EM + G          LL+ C++     E   + 
Sbjct: 517 DVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVI 576

Query: 399 ----EDMKSS 404
               +DM++S
Sbjct: 577 RTMHKDMRTS 586


>gi|255661156|gb|ACU25747.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 426

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 173/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 63  AISIFS-RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 122 TMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 179

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN ++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNXMMMIYGKTLEHEKAN 239

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++   
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAY 299

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG   +
Sbjct: 300 ERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKD 354

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 355 ITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 148/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+++ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN ++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNXMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G + +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 136/288 (47%), Gaps = 1/288 (0%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +  
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                 K+  +  +I+ EM +     +  T   ++  YG+    ++   ++  M++ G++
Sbjct: 122 TMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNTLL +  D     EA  +F  M+  +N + +  T++ M+ I     +  +A  
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNXMMMIYGKTLEHEKANN 240

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNXMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G D D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 178/394 (45%), Gaps = 17/394 (4%)

Query: 101 SLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLK 160
           +L++ A+D  +  A   ++  V+R LG +        +L+ M  P  + L +  +T  L 
Sbjct: 131 ALLRWASDEGAADAAALEM--VVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLH 188

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKA 219
           A      Y             ++A +LF ++  +GV P  VT++ ++    RM     + 
Sbjct: 189 ALSRAGRY-------------ERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRI 235

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           V   E M + G +PD  T S++I A GR G ++ A   ++  +          ++ L+++
Sbjct: 236 VALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQV 295

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +G AGN+   L V +EM+  G +P+ +TYN L  T  RA    +       MT  GL PN
Sbjct: 296 FGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPN 355

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY +++ AY      ++ L+++  MK+ G   +V  YN +  M           E+ E
Sbjct: 356 TFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLE 415

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +M S   C P+  T+++M+ +C  RG       + N M   G E +     +LI  YG+ 
Sbjct: 416 EM-SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRC 474

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
                  +  + +   G TP       LLNV+++
Sbjct: 475 GSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSR 508



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 149/329 (45%), Gaps = 4/329 (1%)

Query: 155 FTNKLKASKEV---ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
           F   LKA   V   + YN  ++VF K  +  +A R+  +M D G +PD VT++ L     
Sbjct: 273 FFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYA 332

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
                 +A +  + M S G  P+  TY++++ AY   G V+ A  L+DR +   +  + N
Sbjct: 333 RAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVN 392

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
            ++ +  + G    F   L + EEM   G  PN +T+N +L   G+      V  +   M
Sbjct: 393 TYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGM 452

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G+  + +TY +L+ AYGR         +Y EM   G    +T YN LL + +  G  
Sbjct: 453 KSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDW 512

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
             A  I   M  +   +P+  ++S ++   +  G  +  E++  E+      P+  +L +
Sbjct: 513 STAQSIVSKMLKN-GFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRT 571

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPD 480
           L+    K +R + V +A   +   G  PD
Sbjct: 572 LVIANFKCRRLEGVEKAFQEVKAQGYKPD 600



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 147/313 (46%), Gaps = 1/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  M  +     +D+A  LFD M   G  P+  T++ +       +     +E  E M 
Sbjct: 359 YNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMS 418

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P+ +T+++M+   G+ G  +    + +  ++    +  + ++TLI  YG  G+  
Sbjct: 419 RSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRT 478

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +Y+EM + G  P + TYN LL+ + R       ++I  +M  NG  PN  +Y+ LL
Sbjct: 479 YAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLL 538

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           + Y +        S+ +E+    +  S  +  TL+         +   + F+++K+ +  
Sbjct: 539 QCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKA-QGY 597

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD   F+SM+ + +  G  S+A  MF+ + ++G  P+L    SL+  Y K+  + +  +
Sbjct: 598 KPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEK 657

Query: 468 ALNRLPELGITPD 480
            L +L    + PD
Sbjct: 658 ILKQLKSSQVKPD 670



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 154/331 (46%), Gaps = 1/331 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALAL     K      V  YN+   +  K         + ++M   G  P+ VT++T+++
Sbjct: 375 ALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLA 434

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 + +        M S G +    TY+++I AYGR G+   AF +YD   +  +  
Sbjct: 435 VCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTP 494

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
               ++ L+ +    G++    ++  +M   G KPN  +Y+ LL    +      +++I 
Sbjct: 495 CLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIE 554

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           KE+    + P+W    +L+ A  + R  E     ++E+K +G +  + ++N++LAM A  
Sbjct: 555 KEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKN 614

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G   +A E+F+ +K S    PD  T++S++ + +   +  EAE +  ++  +  +P++  
Sbjct: 615 GLYSKATEMFDSIKQS-GLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVS 673

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             ++I  + K     +  R L+ +   G+ P
Sbjct: 674 YNTVINGFCKQGLIKEAQRILSEMIADGMAP 704



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 145/314 (46%), Gaps = 1/314 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +N  + V  K    D   R+ + M   GV+    T++TLIS          A + ++ 
Sbjct: 427 VTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDE 486

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S G  P   TY+++++   R G+   A  +  +     ++ +  ++S L++ Y   GN
Sbjct: 487 MISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGN 546

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
             G  ++ +E+    + P+ +    L+    + +R   V+  ++E+   G  P+   + S
Sbjct: 547 AAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNS 606

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +L  Y +         ++  +K+ G+   +  YN+L+ M A    + EA +I + +KSS+
Sbjct: 607 MLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQ 666

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +PD  +++++I     +G + EA+ + +EM+  G  P +    +L+  Y   +  ++ 
Sbjct: 667 -VKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEA 725

Query: 466 VRALNRLPELGITP 479
              +N +    + P
Sbjct: 726 REVVNYMIHHNLKP 739



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 109/226 (48%), Gaps = 1/226 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VIL  + +  F KCR L+  E+ F ++  +G KPD V F+++++    N L +KA E F+
Sbjct: 567 VILRTLVIANF-KCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFD 625

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G  PD +TY+S++D Y ++     A  +  + ++ + + D  +++T+I  +   G
Sbjct: 626 SIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQG 685

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  +  EM A G+ P ++TY+ L+      +   + + +   M  + L P   TY 
Sbjct: 686 LIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYR 745

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
            ++ +Y +A+  ++      E+ +        L + L A   D  +
Sbjct: 746 RVVDSYCKAKRYDEAREFLSEISDTDQNFDQKLQHMLEARIKDAQF 791



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 10/108 (9%)

Query: 158 KLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
           +LK+S+   +V+ YN  +  F K   + +A+R+  +M+  G+ P  VT+ TL+       
Sbjct: 661 QLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLE 720

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           + N+A E    M      P  LTY  ++D+Y +A         YD AR
Sbjct: 721 MFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKR-------YDEAR 761


>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
 gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
          Length = 646

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 152/315 (48%), Gaps = 37/315 (11%)

Query: 166 ILYNVTMKVFRKCRD-LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           + YNV + ++ K  D  D+ + LF +M D  + PD+ T++T+I+    N+   +A+  F+
Sbjct: 110 VTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQ 169

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   GC P+ +TY++++D YG+        G++  A            S L+       
Sbjct: 170 EMKEAGCCPNRVTYNALLDVYGKG-------GMHKEA------------SELLV------ 204

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                     EM+A G+ PN++TYN L+    RA    +   + K +   GL P+  TY 
Sbjct: 205 ----------EMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYC 254

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+ A+ RA   E  L  + EM++     ++  YN L+ +   +   D+  ++F+ M+  
Sbjct: 255 TLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQ-E 313

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +NC PD  T++S++      G ++E   +F EM  AG+ P +     LI+CYG+    D 
Sbjct: 314 KNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDY 373

Query: 465 VVRALNRLPELGITP 479
            V     L   G+ P
Sbjct: 374 SVDIYKGLLRTGLQP 388



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 154/330 (46%), Gaps = 2/330 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  ++ YN  +  + +    D+A  L   +L +G+ PD  T+ TLIS         KA+E
Sbjct: 212 SPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALE 271

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F  M    C P+ +TY+ +ID YGR   ++    ++   + +    D   +++L+K +G
Sbjct: 272 TFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFG 331

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G      NV+ EMK  G  P + T+N L++  GR         IYK +   GL P   
Sbjct: 332 NCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVP 391

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+A+L+ +  R    +    V +EM E G+QLS   +  L+   A+ G   +  +  +++
Sbjct: 392 TFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDEL 451

Query: 402 KSSENCQPDSWTFSSMITICSCRGKV-SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           + S   QP S        +  C+  + +EA+   N++ + G  P++ V  ++I    K  
Sbjct: 452 EKSAK-QPLSGILCKTFVLAYCKCCMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRG 510

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNV 490
             +  V+ L  + +  + PD     CL+++
Sbjct: 511 WIERAVKLLEEIRKAQLKPDGVTYNCLMSM 540



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 134/340 (39%), Gaps = 41/340 (12%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
           F  +   + +++ +N  +K F  C  L +   +F +M   G  P   TF+ LI C     
Sbjct: 310 FMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCG 369

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
             + +V+ ++ +   G  P   T+++++ +  R G  +    +         ++     +
Sbjct: 370 YVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHA 429

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAI----------------------------------- 299
            LI  Y  +G F       +E++                                     
Sbjct: 430 GLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLYD 489

Query: 300 -GVKPNMITYNNLLDTMGRAKRPWQVKTI--YKEMTDNGLSPNWNTYASLLRAYGRARYG 356
            G  P++  +N ++     AKR W  + +   +E+    L P+  TY  L+  YGR    
Sbjct: 490 NGHSPDIKVFNAMISMC--AKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMY 547

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
                V  EM+  G   ++  YNTLL      G  D+A  +F DM ++   +PD++TF++
Sbjct: 548 HKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAAR-VRPDNFTFNT 606

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           ++   S  G   EA ++   M E G +P      +L+  Y
Sbjct: 607 LVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGY 646



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 4/203 (1%)

Query: 152 LTYFTNKLKASKEVILYNVTMKVFR----KCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           L  + ++L+ S +  L  +  K F     KC   ++A+   + + D G  PD   F+ +I
Sbjct: 444 LRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLYDNGHSPDIKVFNAMI 503

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           S         +AV+  E +      PD +TY+ ++  YGR G    A  +    R     
Sbjct: 504 SMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKA 563

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            +   ++TL+  Y   G  D    V+ +M A  V+P+  T+N L+ +        +  ++
Sbjct: 564 PNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSV 623

Query: 328 YKEMTDNGLSPNWNTYASLLRAY 350
            + MT++G  P   T+ +LL  Y
Sbjct: 624 IEYMTEHGCQPTQITFKALLDGY 646


>gi|410110079|gb|AFV61119.1| pentatricopeptide repeat-containing protein 123, partial [Junellia
           succulentifolia]
          Length = 382

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 173/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +    A  L  +M   GV P+  ++STL+
Sbjct: 24  AISIFS-RLKRSGFMPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVTPNTASYSTLL 82

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 83  TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 140

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++   
Sbjct: 201 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAY 260

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG   +
Sbjct: 261 ERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGXVKD 315

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 316 ITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLN 359



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 141/286 (49%), Gaps = 1/286 (0%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V  D V +S LI  +R     +KA+  F R+   G  PD + Y++MI+ +G+A     A 
Sbjct: 1   VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFRDAR 60

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L    R      +  ++STL+ +Y     F   L+V+ EM+ I    ++ T N ++D  
Sbjct: 61  SLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVY 120

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           G+     +   ++  M   G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V
Sbjct: 121 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 180

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YN+++ +       ++A  + ++M+ +   +P+S T+S++I+I    GK+  A  +F 
Sbjct: 181 VTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 239

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           ++  +G + +  +  ++I  Y +A       R L+ L      P D
Sbjct: 240 KLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRD 285



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 129/278 (46%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 114 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 173

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    +N    I+PN+  +ST+I ++G  G  
Sbjct: 174 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG--IEPNSITYSTIISIWGKVGKL 231

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV  + + Y  ++    RA      K +  E+      P  +    +
Sbjct: 232 DRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DIAIHI 290

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 291 LAGAGRI---EEATWVFRQAIDAGXVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGL-G 346

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   + +  + +  GK+ E   A  ++ EM E G
Sbjct: 347 YFPDS---NVIALVLNAYGKLHEFDKANDVYMEMQEVG 381


>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
 gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
          Length = 823

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 150/316 (47%), Gaps = 37/316 (11%)

Query: 165 VILYNVTMKVFRKCRD-LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
            + YNV + ++ K  D  D+ + LF +M D  + PD+ T++T+I+    N+   +A+  F
Sbjct: 248 AVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLF 307

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   GC P+ +TY++++D YG+        G++  A                      
Sbjct: 308 QEMKEAGCCPNRVTYNALLDVYGKG-------GMHKEASE-------------------- 340

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                   +  EM+A G+ PN++TYN L+    RA    +   + K +   GL P+  TY
Sbjct: 341 --------LLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTY 392

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ A+ RA   E  L  + EM++     ++  YN L+ +   +   D+  ++F+ M+ 
Sbjct: 393 CTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQ- 451

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +NC PD  T++S++      G ++E   +F EM  AG+ P +     LI+CYG+    D
Sbjct: 452 EKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVD 511

Query: 464 DVVRALNRLPELGITP 479
             V     L   G+ P
Sbjct: 512 YSVDIYKGLLRTGLQP 527



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 154/330 (46%), Gaps = 2/330 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  ++ YN  +  + +    D+A  L   +L +G+ PD  T+ TLIS         KA+E
Sbjct: 351 SPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALE 410

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F  M    C P+ +TY+ +ID YGR   ++    ++   + +    D   +++L+K +G
Sbjct: 411 TFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFG 470

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G      NV+ EMK  G  P + T+N L++  GR         IYK +   GL P   
Sbjct: 471 NCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVP 530

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+A+L+ +  R    +    V +EM E G+QLS   +  L+   A+ G   +  +  +++
Sbjct: 531 TFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDEL 590

Query: 402 KSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           + S   QP S        +  C+ G  +EA+   N++ + G  P++ V  ++I    K  
Sbjct: 591 EKSAK-QPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRG 649

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNV 490
             +  V+ L  + +  + PD     CL+++
Sbjct: 650 WIERAVKLLEEIRKAQLKPDGVTYNCLMSM 679



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 140/291 (48%), Gaps = 12/291 (4%)

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP---SFGCDPDALTYSSMIDAYGRAGN 250
           RGV     T S L        LP  A+E FE +    S+  D     Y+S+I    RA  
Sbjct: 176 RGV----ATASILSVLGNHEQLP-AALELFESLKQDESYSLD--VYAYTSLISILSRARR 228

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN-FDGCLNVYEEMKAIGVKPNMITYN 309
            +    L++  + E  R +   ++ ++ LYG  G+ +D   ++++EMK + + P+  TYN
Sbjct: 229 FDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYN 288

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            ++    +     +   +++EM + G  PN  TY +LL  YG+    ++   +  EM+  
Sbjct: 289 TMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAA 348

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G+  ++  YN L+A  A  G  DEA  + + + S   C PD +T+ ++I+  +   +  +
Sbjct: 349 GISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLC-PDEFTYCTLISAFNRAERYEK 407

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           A   F EM +    PN+     LI  YG+ ++ DD+++    + E   TPD
Sbjct: 408 ALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPD 458



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 119/250 (47%), Gaps = 5/250 (2%)

Query: 242 IDAYGRAGNVEMAFGLYDRAR-NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA-I 299
           + A GR G  + A  +++  R ++ +++   A ++++ + G        L ++E +K   
Sbjct: 148 VKALGRQGKWKKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFESLKQDE 207

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
               ++  Y +L+  + RA+R  +  T+++ M   G   N  TY  +L  YG+     D 
Sbjct: 208 SYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDR 267

Query: 360 L-SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
           + S+++EMK+  +      YNT++  C    +  EA  +F++MK +  C P+  T+++++
Sbjct: 268 IQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEA-GCCPNRVTYNALL 326

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
            +    G   EA  +  EM  AG  PN+     LI  Y +A   D+       L   G+ 
Sbjct: 327 DVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLC 386

Query: 479 PDDRFCGCLL 488
           PD+ F  C L
Sbjct: 387 PDE-FTYCTL 395



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 135/342 (39%), Gaps = 41/342 (11%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
           F  +   + +++ +N  +K F  C  L +   +F +M   G  P   TF+ LI C     
Sbjct: 449 FMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCG 508

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
             + +V+ ++ +   G  P   T+++++ +  R G  +    +         ++     +
Sbjct: 509 YVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHA 568

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAI----------------------------------- 299
            LI  Y  +G F       +E++                                     
Sbjct: 569 GLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYD 628

Query: 300 -GVKPNMITYNNLLDTMGRAKRPWQVKTI--YKEMTDNGLSPNWNTYASLLRAYGRARYG 356
            G  P++  +N ++     AKR W  + +   +E+    L P+  TY  L+  YGR    
Sbjct: 629 NGHSPDIKVFNAMISMC--AKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMY 686

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
                V  EM+  G   ++  YNTLL      G  D+A  +F DM ++   +PD++TF++
Sbjct: 687 YKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAA-RVRPDNFTFNT 745

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           ++   S  G   EA ++   M E G +P      +L+  Y +
Sbjct: 746 LVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGYNR 787



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 4/205 (1%)

Query: 152 LTYFTNKLKASKEVILYNVTMKVFR----KCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           L  + ++L+ S +  L  +  K F     KC   ++A+   + + D G  PD   F+ +I
Sbjct: 583 LRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMI 642

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           S         +AV+  E +      PD +TY+ ++  YGR G    A  +    R     
Sbjct: 643 SMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKA 702

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            +   ++TL+  Y   G  D    V+ +M A  V+P+  T+N L+ +        +  ++
Sbjct: 703 PNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSV 762

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGR 352
            + MT++G  P   T+ +LL  Y R
Sbjct: 763 IEYMTEHGCQPTQITFKALLDGYNR 787



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 83/164 (50%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S ++ ++N  + +  K   +++A +L +++    +KPD VT++ L+S      +  KA E
Sbjct: 632 SPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEE 691

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
               M   G  P+ +TY++++ +Y + G ++ A  ++      + R D   F+TL+  Y 
Sbjct: 692 VMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYS 751

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           + G +   L+V E M   G +P  IT+  LLD   R   P + K
Sbjct: 752 SLGLYKEALSVIEYMTEHGCQPTQITFKALLDGYNRNASPSRKK 795


>gi|168061839|ref|XP_001782893.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665615|gb|EDQ52293.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 713

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 132/527 (25%), Positives = 231/527 (43%), Gaps = 79/527 (14%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLF----------DDMLDRGVKPDNVTFSTLISCARMN 213
           ++++YN  + V+ K     + E +           +D+ +  +  D VT++TL+      
Sbjct: 199 DLMIYNSLISVYGKAGLFYEVELVVKSLRAEIARREDLGNSSLAFDLVTYNTLLDVYGKA 258

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
              +  + WF  M   G  PD LT+ S+++AYG+A + +    + +  R   ++ D   +
Sbjct: 259 GRLDDVIYWFGEMKKSGVQPDVLTFDSLVNAYGKASHYDGE--VLELFRKYNYKSDLVFY 316

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           +TL+ ++G  G++     + E+MKA G  P   TYN+L+   GR  +  + +   + M  
Sbjct: 317 NTLLFMFGKGGHYADAWKILEDMKAAGFMPTSETYNSLILAFGRGSQWQEAENTLERMKA 376

Query: 334 NGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           NG+ P   +++ LL AY   G+   GE  +    +MKE+ +   +  +N+LL      G 
Sbjct: 377 NGVKPVAQSFSFLLEAYSLSGQIPKGEKLIV---KMKEENLIYGIAGHNSLLRFYMRAG- 432

Query: 391 TDEAFEIFEDMKSSENCQ-----PDSWTFSSMITICSCRGKVSEAEAMFNEMLE-AGFEP 444
                +I   +++ E CQ     P+  +F  MI   +    V E      + LE A F+ 
Sbjct: 433 -----DIGSIIQTYETCQTRGPKPNQSSFVPMIEALTKENTVDERFWGIAQDLENAPFDV 487

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVE 504
           +  +  +L+   G+  ++ D  R L  L  LG +PD   C                 L E
Sbjct: 488 HFAIHGALLSALGRCGQSPDADRLLGILKRLGCSPD--IC----------------NLFE 529

Query: 505 CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-----DVKKAYCNCLIDLCVN 559
             E + SKL             E  +K+ AT LFNS+ +     + ++ + N LID    
Sbjct: 530 EGEAAQSKLSG-----------EEAWKRLAT-LFNSLEQEGVNMEAERNFHNALIDALWR 577

Query: 560 LNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALES 619
            +    A K+ EL ++L V+     +    WSL ++    GAA   L  W++ + +A++S
Sbjct: 578 FDYKLRALKVTELSVSLGVFGSNVCQWKDCWSLDVRFAGTGAAQILLLTWLSGIRQAIKS 637

Query: 620 GEEFPPLLGI--------NTGHGKHKYSDKGLASVFESHLKELNAPF 658
           GE+ P  + I         TG       + G      +HL  L APF
Sbjct: 638 GEKMPSKVKILLAWEWQLRTGE------NWGARDGVSAHLNALKAPF 678



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 133/287 (46%), Gaps = 11/287 (3%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           +KPD + + T+I+        N A   FE     G  P    Y  ++  Y + G+++   
Sbjct: 19  LKPDELVYRTIINVLINARRMNVAEAVFEEFVKSGMSPSHDDYVILMSGYTKCGSLQRGI 78

Query: 256 GLYDRARNEKWRIDPNAFSTLIK--LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           G+  + R        +A++ +++     T G+ +G +  +  +  +G++ + +T+N +++
Sbjct: 79  GILQKMREAGIHPQVSAYNVILEGCTRSTRGDINGMMEAHRILMDMGLQQDSVTFNIIMN 138

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
            + R  R   V   +  M    + P+  T + L+ A+GRAR       V  EM+  G++ 
Sbjct: 139 ALNRVGRIRDVDRYWALMRMGRIVPDLTTCSILINAFGRARDWHKVDLVLAEMETYGIKA 198

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKS---------SENCQPDSWTFSSMITICSCR 424
            + +YN+L+++    G   E   + + +++         + +   D  T+++++ +    
Sbjct: 199 DLMIYNSLISVYGKAGLFYEVELVVKSLRAEIARREDLGNSSLAFDLVTYNTLLDVYGKA 258

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
           G++ +    F EM ++G +P++    SL+  YGKA   D  V  L R
Sbjct: 259 GRLDDVIYWFGEMKKSGVQPDVLTFDSLVNAYGKASHYDGEVLELFR 305



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 106/226 (46%), Gaps = 13/226 (5%)

Query: 290 LNVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
           + V++ M+A+  +KP+ + Y  +++ +  A+R    + +++E   +G+SP+ + Y  L+ 
Sbjct: 7   IQVFQWMQALPDLKPDELVYRTIINVLINARRMNVAEAVFEEFVKSGMSPSHDDYVILMS 66

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC-----ADVGYTDEAFEIFEDMKS 403
            Y +    +  + + ++M+E G+   V+ YN +L  C      D+    EA  I  DM  
Sbjct: 67  GYTKCGSLQRGIGILQKMREAGIHPQVSAYNVILEGCTRSTRGDINGMMEAHRILMDM-- 124

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               Q DS TF+ ++   +  G++ + +  +  M      P+L   + LI  +G+A+   
Sbjct: 125 --GLQQDSVTFNIIMNALNRVGRIRDVDRYWALMRMGRIVPDLTTCSILINAFGRARDWH 182

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 509
            V   L  +   GI  D      L++V     K  L   VE V KS
Sbjct: 183 KVDLVLAEMETYGIKADLMIYNSLISVYG---KAGLFYEVELVVKS 225


>gi|410110083|gb|AFV61121.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           cujabensis]
          Length = 359

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 38  DLVAYNAMINVFGKAKLFREARSLISEMKTXGVMPNTTSYSTLLTMYVENKKFLEALSVF 97

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 98  SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 155

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 156 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSI 215

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 216 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 275

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 276 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKK 330

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 331 YSNVVEVFDKMRGLGYFPDSNVIAVVLN 358



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 95/201 (47%), Gaps = 4/201 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  + ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 163 AIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 222

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 223 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 278

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 279 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVF 338

Query: 329 KEMTDNGLSPNWNTYASLLRA 349
            +M   G  P+ N  A +L A
Sbjct: 339 DKMRGLGYFPDSNVIAVVLNA 359


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 173/350 (49%), Gaps = 3/350 (0%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K  A+  +  YN+ + +  +   LD A  L D M   G+ P+  T + ++     +   +
Sbjct: 370 KKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLD 429

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +A   FE+M    C PD +T+ S+ID  G+ G V+ A+ +Y++  +   R +   +++LI
Sbjct: 430 EACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLI 489

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           K +   G  +    +Y++M      P++   N  +D M +A  P + + +++E+      
Sbjct: 490 KNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFV 549

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P+  +Y+ L+    +A +  +T  ++  MKE+G  L    YN ++      G  ++A+++
Sbjct: 550 PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQL 609

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            E+MK ++  +P   T+ S+I   +   ++ EA  +F E      E N+ + +SLI  +G
Sbjct: 610 LEEMK-TKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFG 668

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
           K  R D+    L  L + G+TP+      LL+ + +   EE+ + + C +
Sbjct: 669 KVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKA--EEINEALVCFQ 716



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 178/398 (44%), Gaps = 22/398 (5%)

Query: 89  KLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVL-RCLGDDFLEQDCVIILNNMTNPDT 147
           +LK+ +    Y    +   +L  C  + + +  V+ RC   D L+Q    IL  M+    
Sbjct: 74  RLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQ----ILGEMS---- 125

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
               +  F   +    E++L  V     R+  D+ +  R F        +P    ++TLI
Sbjct: 126 ----VAGFGPSVNTCIEMVLSCVKANKLREGFDVVQNMRKFK------FRPAFSAYTTLI 175

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                 N  +  +  F++M   G +P    ++++I  + + G V+ A  L D  ++    
Sbjct: 176 GAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLD 235

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   ++  I  +G  G  D     + E++A G+KP+ +TY +++  + +A R  +   +
Sbjct: 236 ADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEM 295

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           ++ +  N   P    Y +++  YG A   ++  S+    + KG   SV  YN +L     
Sbjct: 296 FEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRK 355

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           +G  DEA  +FE+MK  ++  P+  T++ +I +    GK+  A  + + M +AG  PN+ 
Sbjct: 356 MGKVDEALRVFEEMK--KDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVR 413

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFC 484
            +  ++    K+Q+ D+      ++     TPD+  FC
Sbjct: 414 TVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFC 451



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 145/316 (45%), Gaps = 3/316 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y   +K F      +   +++ DM+++   PD    +T + C      P K    FE 
Sbjct: 483 IVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEE 542

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           + S    PDA +YS +I    +AG     + L+   + +   +D  A++ +I  +   G 
Sbjct: 543 IKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGK 602

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    + EEMK  G +P ++TY +++D + +  R  +   +++E     +  N   Y+S
Sbjct: 603 VNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSS 662

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  +G+    ++   +  E+ +KG+  +V  +N+LL         +EA   F+ MK  +
Sbjct: 663 LIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELK 722

Query: 406 NCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            C P+  T+  +I  +C  R K ++A   + EM + G +P+    T++I    KA    +
Sbjct: 723 -CTPNQVTYGILINGLCKVR-KFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAE 780

Query: 465 VVRALNRLPELGITPD 480
                +R    G  PD
Sbjct: 781 AGALFDRFKANGGVPD 796



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 159/357 (44%), Gaps = 1/357 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S ++ L N  M    K  + +K   +F+++  R   PD  ++S LI         N+  E
Sbjct: 514 SPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYE 573

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F  M   GC  D   Y+ +ID + + G V  A+ L +  + + +      + ++I    
Sbjct: 574 LFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLA 633

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                D    ++EE K+  ++ N++ Y++L+D  G+  R  +   I +E+   GL+PN  
Sbjct: 634 KIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVY 693

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+ SLL A  +A    + L  ++ MKE     +   Y  L+     V   ++AF  +++M
Sbjct: 694 TWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEM 753

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           +  +  +P + ++++MI+  +  G ++EA A+F+     G  P+     ++I+      R
Sbjct: 754 Q-KQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNR 812

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVK 518
             D           G+   ++ C  LL+ + +    E   +V  V +   K  +  +
Sbjct: 813 AMDAFSLFEETRRRGLHIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRETGKARHAAR 869



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 4/134 (2%)

Query: 138 ILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           +L+ +   +    AL  F +  +LK +   + Y + +    K R  +KA   + +M  +G
Sbjct: 698 LLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQG 757

Query: 196 VKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           +KP  ++++T+IS  A+  N+  +A   F+R  + G  PD+  Y++MI+          A
Sbjct: 758 MKPSTISYTTMISGLAKAGNIA-EAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDA 816

Query: 255 FGLYDRARNEKWRI 268
           F L++  R     I
Sbjct: 817 FSLFEETRRRGLHI 830


>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1429

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 180/379 (47%), Gaps = 13/379 (3%)

Query: 138 ILNNMTNPDTAALALTYFTN-KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV 196
           IL  +   +  ALA+  F   +      V +YN  M V+ +    +K + + D M +RG 
Sbjct: 182 ILAVLGKANQEALAVEIFIRAESTVDNTVQVYNAMMGVYARTGRFNKVQGMLDLMRERGC 241

Query: 197 KPDNVTFSTLISCARMNN---LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           +PD V+F+TLI+ AR+      PN A+E    +   G  PD +TY+++I A  R  N+E 
Sbjct: 242 EPDLVSFNTLIN-ARLKAGAMTPNVAIELLNEVRRSGLRPDIITYNTLISACSRESNLEE 300

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  ++D       + D   ++ +I +YG  G       +++E+++ G  P+ +TYN+LL 
Sbjct: 301 AVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLY 360

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
              R     +VK I  EM   G   +  TY +++  YG+       L +YR+MK  G   
Sbjct: 361 AFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTP 420

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
               Y  L+          EA  +  +M +    +P   T+S++I   +  G+  EAE  
Sbjct: 421 DAITYTVLIDSLGKANKMVEAANVMSEMLNI-GVKPTLRTYSALICGYARAGQRLEAEET 479

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCLL-N 489
           F+ M  +G  P+    + ++  +    R D+  +A+    E+   GITPD    G +L N
Sbjct: 480 FDCMRRSGIRPDQLAYSVMLDVF---LRFDEATKAMMLYREMVRDGITPDPTVYGAMLRN 536

Query: 490 VMTQTPKEELGKLVECVEK 508
           +  +   E++ +++  +E+
Sbjct: 537 LGRENKVEDIQRIIRDMEE 555



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/476 (22%), Positives = 207/476 (43%), Gaps = 24/476 (5%)

Query: 210  ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
            AR++N+  +A + ++ M + G  P    Y  MI    +   V     +        +R D
Sbjct: 851  ARVSNIA-EAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPD 909

Query: 270  PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
             + ++++++LY    +F   + +Y+ +K  G++P+  TYN L+    R  RP +  ++  
Sbjct: 910  LSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMH 969

Query: 330  EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
            EM   GL P  +TY SL+ A+G+ +   D   ++ E+  KG +L  + Y+ ++ +  + G
Sbjct: 970  EMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIYRNSG 1029

Query: 390  YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
               +A ++   MK +   +P   T   ++      G+  EAE +   + E G   +    
Sbjct: 1030 NHSKAEKLLSMMKDA-GVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLSLSTLPY 1088

Query: 450  TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 508
            +S+I  Y K +     ++ L  + + G+ PD R   C +   + +    +   L++ ++ 
Sbjct: 1089 SSVIDAYLKNKDYSVGIQKLVEMKKEGLEPDHRIWTCFIRAASLSEHTHDAILLLQALQD 1148

Query: 509  SNSKLGYVVKLLLEEQD---IEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLEN 565
            S   L    +L+ E  D   +E D      E+  ++  +    + N L DL     L   
Sbjct: 1149 SGFDLP--SRLITERSDSLVLEVD---HCLEMLETMEDNAAFNFVNALEDLLWAFELRAT 1203

Query: 566  ACKLLELGLTLEVY-TDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFP 624
            A  +  L +   +Y  D+   +   W    + LS GAAL A          +L+     P
Sbjct: 1204 ASWVFRLAVKRSIYCHDVFRVAEQDWGADFRKLSGGAALDA----------SLQGYPASP 1253

Query: 625  PLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLE 680
              + + TG    +Y+   L +  ++ L E+ +PF     + G  +    + + WL+
Sbjct: 1254 KSVVLITGTA--EYNMVSLDNTLKACLWEMGSPFLPCRTRSGLLVAKAHSLRMWLK 1307



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 120/257 (46%), Gaps = 4/257 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERM 226
           YN  + V+ +C    KAE+LF ++  +G  PD VT+++L+ + AR  N+ +K  E    M
Sbjct: 320 YNAMISVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNV-DKVKEICNEM 378

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G   D +TY+++I  YG+ G   +A  LY   +      D   ++ LI   G A   
Sbjct: 379 VQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKM 438

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
               NV  EM  IGVKP + TY+ L+    RA +  + +  +  M  +G+ P+   Y+ +
Sbjct: 439 VEAANVMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVM 498

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L  + R       + +YREM   G+    T+Y  +L         ++   I  DM+  E 
Sbjct: 499 LDVFLRFDEATKAMMLYREMVRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRDME--EV 556

Query: 407 CQPDSWTFSSMITICSC 423
           C  +    +S++    C
Sbjct: 557 CGMNPQAIASILVKGEC 573



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 153/355 (43%), Gaps = 5/355 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVT-FSTLI 207
           AL L  F     +    ++   ++    K + LD A + ++D  +      + T + +LI
Sbjct: 612 ALDLLQFLKGHVSKSNQLVAEASIVTLCKAKQLDAALKEYNDTREFDWFTGSCTMYESLI 671

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
            C   N    +A + F  M   G  P    Y SM+  Y + G  E A  L D A  E   
Sbjct: 672 QCCEENEFTAEASQIFSDMRFNGVKPSKSLYRSMVLMYCKMGFPETAHYLIDLAEIEGMP 731

Query: 268 IDPNAFST-LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
            D  +    +I+ YG    +    ++   ++      +   +N L+     +    Q + 
Sbjct: 732 FDKISIDVAVIETYGKLKLWQKAESLVGNLRQRCTNVDRKVWNALIQAYAASGCYEQARA 791

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           ++  M  +G SP  ++   LL+A       E+   V +E+++ G Q+S +    +L   A
Sbjct: 792 VFNTMMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSILLILDAFA 851

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPN 445
            V    EA +I++ MK++    P    +  MI +  C+GK V + EAM  EM EAGF P+
Sbjct: 852 RVSNIAEAKKIYQGMKAA-GYFPTMHLYRIMIGLL-CKGKRVRDVEAMVTEMEEAGFRPD 909

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
           L +  S+++ Y         V+   R+ E G+ PD+     L+ +  +  + E G
Sbjct: 910 LSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEG 964



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 154/397 (38%), Gaps = 40/397 (10%)

Query: 97   TRYNSLVKLAADLDSCSATEDDVFSVLRCLG---DDFLEQDCVIILNNMTNPDTAALALT 153
            T Y SL++   + +  +A    +FS +R  G      L +  V++   M  P+TA   + 
Sbjct: 665  TMYESLIQCCEE-NEFTAEASQIFSDMRFNGVKPSKSLYRSMVLMYCKMGFPETAHYLID 723

Query: 154  YFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
                +     ++ +    ++ + K +   KAE L  ++  R    D   ++ LI     +
Sbjct: 724  LAEIEGMPFDKISIDVAVIETYGKLKLWQKAESLVGNLRQRCTNVDRKVWNALIQAYAAS 783

Query: 214  NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
                +A   F  M   G  P   + + ++ A    G +E  + +    ++  ++I  ++ 
Sbjct: 784  GCYEQARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSI 843

Query: 274  STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
              ++  +    N      +Y+ MKA G  P M  Y  ++  + + KR   V+ +  EM +
Sbjct: 844  LLILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEE 903

Query: 334  NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
             G  P+ + + S+LR Y        T+ +Y+ +KE G+                      
Sbjct: 904  AGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGL---------------------- 941

Query: 394  AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
                          QPD  T++++I +     +  E  ++ +EM   G EP L    SLI
Sbjct: 942  --------------QPDEDTYNTLIVMYCRDHRPEEGCSLMHEMRRIGLEPKLDTYKSLI 987

Query: 454  QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
              +GK Q   D       L   G   D  F   ++ +
Sbjct: 988  AAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKI 1024



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 119/238 (50%)

Query: 167  LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
            ++N  ++++    D  K  +++  + + G++PD  T++TLI     ++ P +       M
Sbjct: 912  IWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHEM 971

Query: 227  PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
               G +P   TY S+I A+G+   V  A  L++   ++  ++D + +  ++K+Y  +GN 
Sbjct: 972  RRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIYRNSGNH 1031

Query: 287  DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                 +   MK  GV+P + T + L+ + G + +P + + +   + + GLS +   Y+S+
Sbjct: 1032 SKAEKLLSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLSLSTLPYSSV 1091

Query: 347  LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            + AY + +     +    EMK++G++    ++   +   +   +T +A  + + ++ S
Sbjct: 1092 IDAYLKNKDYSVGIQKLVEMKKEGLEPDHRIWTCFIRAASLSEHTHDAILLLQALQDS 1149



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/243 (17%), Positives = 101/243 (41%), Gaps = 9/243 (3%)

Query: 99   YNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQD-----CVIILNNMTNPDTAALALT 153
            +NS+++L   +D    T      + + + +D L+ D      +I++    +      +L 
Sbjct: 913  WNSMLRLYTGIDDFRKT----VQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLM 968

Query: 154  YFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
            +   ++    ++  Y   +  F K + +  AE LF+++L +G K D   +  ++   R +
Sbjct: 969  HEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIYRNS 1028

Query: 214  NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
               +KA +    M   G +P   T   ++ +YG +G  + A  +    +     +    +
Sbjct: 1029 GNHSKAEKLLSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLSLSTLPY 1088

Query: 274  STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
            S++I  Y    ++   +    EMK  G++P+   +   +     ++       + + + D
Sbjct: 1089 SSVIDAYLKNKDYSVGIQKLVEMKKEGLEPDHRIWTCFIRAASLSEHTHDAILLLQALQD 1148

Query: 334  NGL 336
            +G 
Sbjct: 1149 SGF 1151


>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
 gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
          Length = 901

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 159/317 (50%), Gaps = 3/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           +I Y   + ++ K   + KA  +  +M   G+K +N T+S LI+    +++  N A   F
Sbjct: 439 IISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFAN-AFAIF 497

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  PD   Y+ +I+A+ + GN++ A  + ++ + E+ +    AF  +I+ Y  A
Sbjct: 498 EEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVA 557

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+    L+  + M+  G  P ++TYN L+  + R  +  +  ++  +M+  G++PN +TY
Sbjct: 558 GDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTY 617

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++R Y  +         + ++KE G++L V +Y TLL  C   G    A  +  +M S
Sbjct: 618 TIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM-S 676

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +    +++ ++ +I   + RG V EAE +  +M E G  PN+   TS I    KA    
Sbjct: 677 FQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQ 736

Query: 464 DVVRALNRLPELGITPD 480
              + +  + ++G+ P+
Sbjct: 737 RAEKVIEEMVDVGLKPN 753



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 157/374 (41%), Gaps = 38/374 (10%)

Query: 143 TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVT 202
           + PD     ++ F    K S+    + + +  + K  D   A   F++M  RG++P+   
Sbjct: 244 SRPDNWQAVVSAFERIPKPSRRE--FGLMIVYYAKRGDKHHARATFENMRARGIEPNAFV 301

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           F++L+    +      A+   E M S G +   +TYS +I  + +  + + A  L+  A+
Sbjct: 302 FTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAK 361

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNF------------DG---------------------- 288
            +   ++   +S +I  +  +GN             DG                      
Sbjct: 362 TKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNEN 421

Query: 289 -CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
            CL V+E +K  G KP++I+Y  LL+   +  +  +  +I KEM   G+  N  TY+ L+
Sbjct: 422 KCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLI 481

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             +       +  +++ EM   G+Q    +YN L+     +G  D A  I E M+  E  
Sbjct: 482 NGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQ-KERM 540

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           QP +  F  +I   +  G +  A    + M  +G  P +    +LI    +  +    V 
Sbjct: 541 QPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVS 600

Query: 468 ALNRLPELGITPDD 481
            L+++   GITP++
Sbjct: 601 VLDKMSIAGITPNE 614



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 117/251 (46%), Gaps = 1/251 (0%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D+  A    D M   G  P  +T++ LI      +   +AV   ++M   G  P+  TY+
Sbjct: 559 DMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYT 618

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            ++  Y  +G++  AF  + + +    ++D   + TL++    +G     L V  EM   
Sbjct: 619 IIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQ 678

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
            +  N   YN L+D   R    W+ + + K+M ++G+ PN +TY S + A  +A   +  
Sbjct: 679 KIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRA 738

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
             V  EM + G++ +V  Y TL+   A V   D A + FE+MK +   +PD  ++  ++T
Sbjct: 739 EKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLA-GLKPDEASYHCLVT 797

Query: 420 ICSCRGKVSEA 430
               R  V E 
Sbjct: 798 SLLSRATVMEG 808



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 133/291 (45%), Gaps = 1/291 (0%)

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
            +R  KP    F  +I         + A   FE M + G +P+A  ++S++ AY  A ++
Sbjct: 256 FERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDM 315

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
             A    +  ++E   +    +S LI  +    +     N+++E K      N I Y+N+
Sbjct: 316 RGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNI 375

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +    ++    + + + +EM ++G+    + Y S++  Y   +     L V+  +KE G 
Sbjct: 376 IHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGF 435

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
           + S+  Y  LL +   +G   +A  I ++M+S    + ++ T+S +I         + A 
Sbjct: 436 KPSIISYGCLLNLYVKIGKVAKALSISKEMESC-GIKHNNKTYSMLINGFIHLHDFANAF 494

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           A+F EML +G +P+  +   LI+ + K    D  +  L ++ +  + P +R
Sbjct: 495 AIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNR 545



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 137/316 (43%), Gaps = 1/316 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ Y++ +  F K  D   A+ LF +   +    + + +S +I     +    +A E   
Sbjct: 334 IVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVR 393

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G D     Y SM+  Y    N      +++R +   ++    ++  L+ LY   G
Sbjct: 394 EMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIG 453

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                L++ +EM++ G+K N  TY+ L++             I++EM  +GL P+   Y 
Sbjct: 454 KVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYN 513

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L+ A+ +    +  + +  +M+++ MQ S   +  ++   A  G    A +  + M+ S
Sbjct: 514 LLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRS 573

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
             C P   T++++I     + KV  A ++ ++M  AG  PN    T +++ Y  +     
Sbjct: 574 -GCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGK 632

Query: 465 VVRALNRLPELGITPD 480
                 ++ E G+  D
Sbjct: 633 AFEYFTKIKESGLKLD 648



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 103/218 (47%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +    +   + +A  + D M   G+ P+  T++ ++     +    KA E+F 
Sbjct: 579 VMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFT 638

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           ++   G   D   Y +++ A  ++G ++ A  +      +K   +   ++ LI  +   G
Sbjct: 639 KIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRG 698

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           +     ++ ++MK  GV PN+ TY + ++   +A    + + + +EM D GL PN  TY 
Sbjct: 699 DVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYT 758

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +L++ + R    +  L  + EMK  G++     Y+ L+
Sbjct: 759 TLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLV 796



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 89/202 (44%), Gaps = 43/202 (21%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           +ALA+T   +  K  +   +YN+ +  + +  D+ +AE L   M + GV P+  T+++ I
Sbjct: 667 SALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYI 726

Query: 208 -SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
            +C +  ++  +A +  E M   G  P+  TY+++I  + R         L DRA     
Sbjct: 727 NACCKAGDM-QRAEKVIEEMVDVGLKPNVKTYTTLIKGWARV-------SLPDRA----- 773

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD------TMGRAKR 320
                                  L  +EEMK  G+KP+  +Y+ L+       T+     
Sbjct: 774 -----------------------LKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGST 810

Query: 321 PWQVKTIYKEMTDNGLSPNWNT 342
              + ++ +EM++N L+ +  T
Sbjct: 811 YTGIISVCREMSENDLTVDLRT 832


>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
 gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
          Length = 900

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 159/317 (50%), Gaps = 3/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           +I Y   + ++ K   + KA  +  +M   G+K +N T+S LI+    +++  N A   F
Sbjct: 438 IISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFAN-AFAIF 496

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  PD   Y+ +I+A+ + GN++ A  + ++ + E+ +    AF  +I+ Y  A
Sbjct: 497 EEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVA 556

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+    L+  + M+  G  P ++TYN L+  + R  +  +  ++  +M+  G++PN +TY
Sbjct: 557 GDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTY 616

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++R Y  +         + ++KE G++L V +Y TLL  C   G    A  +  +M S
Sbjct: 617 TIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM-S 675

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +    +++ ++ +I   + RG V EAE +  +M E G  PN+   TS I    KA    
Sbjct: 676 FQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQ 735

Query: 464 DVVRALNRLPELGITPD 480
              + +  + ++G+ P+
Sbjct: 736 RAEKVIEEMVDVGLKPN 752



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 157/374 (41%), Gaps = 38/374 (10%)

Query: 143 TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVT 202
           + PD     ++ F    K S+    + + +  + K  D   A   F++M  RG++P+   
Sbjct: 243 SRPDNWQAVVSAFERIPKPSRRE--FGLMIVYYAKRGDKHHARATFENMRARGIEPNAFV 300

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           F++L+    +      A+   E M S G +   +TYS +I  + +  + + A  L+  A+
Sbjct: 301 FTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAK 360

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNF------------DG---------------------- 288
            +   ++   +S +I  +  +GN             DG                      
Sbjct: 361 TKLSSLNGIIYSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNEN 420

Query: 289 -CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
            CL V+E +K  G KP++I+Y  LL+   +  +  +  +I KEM   G+  N  TY+ L+
Sbjct: 421 KCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLI 480

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             +       +  +++ EM   G+Q    +YN L+     +G  D A  I E M+  E  
Sbjct: 481 NGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQ-KERM 539

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           QP +  F  +I   +  G +  A    + M  +G  P +    +LI    +  +    V 
Sbjct: 540 QPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVS 599

Query: 468 ALNRLPELGITPDD 481
            L+++   GITP++
Sbjct: 600 VLDKMSIAGITPNE 613



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 117/251 (46%), Gaps = 1/251 (0%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D+  A    D M   G  P  +T++ LI      +   +AV   ++M   G  P+  TY+
Sbjct: 558 DMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYT 617

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            ++  Y  +G++  AF  + + +    ++D   + TL++    +G     L V  EM   
Sbjct: 618 IIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQ 677

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
            +  N   YN L+D   R    W+ + + K+M ++G+ PN +TY S + A  +A   +  
Sbjct: 678 KIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRA 737

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
             V  EM + G++ +V  Y TL+   A V   D A + FE+MK +   +PD  ++  ++T
Sbjct: 738 EKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLA-GLKPDEASYHCLVT 796

Query: 420 ICSCRGKVSEA 430
               R  V E 
Sbjct: 797 SLLSRATVMEG 807



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 132/291 (45%), Gaps = 1/291 (0%)

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
            +R  KP    F  +I         + A   FE M + G +P+A  ++S++ AY  A ++
Sbjct: 255 FERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDM 314

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
             A    +  ++E   +    +S LI  +    +     N+++E K      N I Y+N+
Sbjct: 315 RGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNI 374

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +    ++    + + +  EM ++G+    + Y S++  Y   +     L V+  +KE G 
Sbjct: 375 IHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGF 434

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
           + S+  Y  LL +   +G   +A  I ++M+S    + ++ T+S +I         + A 
Sbjct: 435 KPSIISYGCLLNLYVKIGKVAKALSISKEMESC-GIKHNNKTYSMLINGFIHLHDFANAF 493

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           A+F EML +G +P+  +   LI+ + K    D  +  L ++ +  + P +R
Sbjct: 494 AIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNR 544



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 137/316 (43%), Gaps = 1/316 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ Y++ +  F K  D   A+ LF +   +    + + +S +I     +    +A E   
Sbjct: 333 IVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVC 392

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G D     Y SM+  Y    N      +++R +   ++    ++  L+ LY   G
Sbjct: 393 EMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIG 452

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                L++ +EM++ G+K N  TY+ L++             I++EM  +GL P+   Y 
Sbjct: 453 KVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYN 512

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L+ A+ +    +  + +  +M+++ MQ S   +  ++   A  G    A +  + M+ S
Sbjct: 513 LLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRS 572

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
             C P   T++++I     + KV  A ++ ++M  AG  PN    T +++ Y  +     
Sbjct: 573 -GCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGK 631

Query: 465 VVRALNRLPELGITPD 480
                 ++ E G+  D
Sbjct: 632 AFEYFTKIKESGLKLD 647



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 103/218 (47%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +    +   + +A  + D M   G+ P+  T++ ++     +    KA E+F 
Sbjct: 578 VMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFT 637

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           ++   G   D   Y +++ A  ++G ++ A  +      +K   +   ++ LI  +   G
Sbjct: 638 KIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRG 697

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           +     ++ ++MK  GV PN+ TY + ++   +A    + + + +EM D GL PN  TY 
Sbjct: 698 DVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYT 757

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +L++ + R    +  L  + EMK  G++     Y+ L+
Sbjct: 758 TLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLV 795



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/319 (20%), Positives = 138/319 (43%), Gaps = 4/319 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGV-KPDNVTFSTLISCARMNNLPNKAVEWFE 224
           I+Y+  +    +  ++++AE L  +M + G+  P +V  S +     + N  NK +  FE
Sbjct: 369 IIYSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQN-ENKCLVVFE 427

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           R+   G  P  ++Y  +++ Y + G V  A  +     +   + +   +S LI  +    
Sbjct: 428 RLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLH 487

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           +F     ++EEM   G++P+   YN L++   +     +   I ++M    + P+   + 
Sbjct: 488 DFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFR 547

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            ++  Y  A   +  L     M+  G   +V  YN L+           A  + + M S 
Sbjct: 548 PIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKM-SI 606

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               P+  T++ ++   +  G + +A   F ++ E+G + ++++  +L++   K+ R   
Sbjct: 607 AGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQS 666

Query: 465 VVRALNRLPELGITPDDRF 483
            + A+ R       P + F
Sbjct: 667 AL-AVTREMSFQKIPRNTF 684



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 89/202 (44%), Gaps = 43/202 (21%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           +ALA+T   +  K  +   +YN+ +  + +  D+ +AE L   M + GV P+  T+++ I
Sbjct: 666 SALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYI 725

Query: 208 -SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
            +C +  ++  +A +  E M   G  P+  TY+++I  + R         L DRA     
Sbjct: 726 NACCKAGDM-QRAEKVIEEMVDVGLKPNVKTYTTLIKGWARV-------SLPDRA----- 772

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD------TMGRAKR 320
                                  L  +EEMK  G+KP+  +Y+ L+       T+     
Sbjct: 773 -----------------------LKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGST 809

Query: 321 PWQVKTIYKEMTDNGLSPNWNT 342
              + ++ +EM++N L+ +  T
Sbjct: 810 YTGIISVCREMSENDLTVDLRT 831


>gi|414888267|tpg|DAA64281.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 873

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 146/641 (22%), Positives = 263/641 (41%), Gaps = 101/641 (15%)

Query: 108 DLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKL---KASKE 164
           DL + S T     S++     + L ++   +L+ M     A  A TY T      +A+  
Sbjct: 166 DLPAESRTALSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDP 225

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
            + +++ + +F + R  D +           V+PD  T++TL++ A + +L +++     
Sbjct: 226 PVPFDMLLGLFAEMRH-DASP---------SVRPDLTTYNTLLAAAAVRSLADQSEMLLH 275

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  PD ++Y  ++DA+  AGN+  A  L+          D +A+  L++ +   G
Sbjct: 276 TMLEAGVSPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVG 335

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                + V  +M+A G  P   TY  LLD  GR  R   V+ +++EM    + P+  TY 
Sbjct: 336 ATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMR-TAVPPDTATYN 394

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L R +G   + ++ + ++ +M + G+Q  +     ++A C   G   +A E+ E M + 
Sbjct: 395 VLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYM-TR 453

Query: 405 ENCQP--DSWT------------------FSSMITICS--------------CRGKV-SE 429
           E   P  D++T                  F+ M  I S               RG +  E
Sbjct: 454 EGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQE 513

Query: 430 AEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           AEA+F+ M   AG + +     +LI+ Y +  R DD V+A   + +    PD+R    +L
Sbjct: 514 AEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVL 573

Query: 489 NV-----MTQTPKEELGKLVECV---------------------------------EKSN 510
           N      +    KE+  +L   V                                  +++
Sbjct: 574 NAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTNRAS 633

Query: 511 SKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACK 568
           S    +  L+  E D   +++     L NS  +  D    + N L+ +         A +
Sbjct: 634 STHQVIASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQKGRAAR 693

Query: 569 LLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLG 628
           +L+  +   ++ ++   +   WSL +  +S+G AL A+ +W+N L   L   E+ P L  
Sbjct: 694 VLDQAVKFGLFPELYRDTKLVWSLDVHRMSMGGALVAVSVWLNKLYDRLVEDEDLPQLAS 753

Query: 629 I-------NTGHGKHKYSDKGL--ASVFESHLKE-LNAPFH 659
           +         G  +     +GL  A V  S L + L+A FH
Sbjct: 754 VVFFFSISRRGEMEKSTVTRGLPIAKVVYSFLNDTLSASFH 794


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 178/394 (45%), Gaps = 17/394 (4%)

Query: 101 SLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLK 160
           +L++ A+D  +  A   ++  V+R LG +        +L+ M  P  + L +  +T  L 
Sbjct: 131 ALLRWASDEGAADAAALEM--VVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLH 188

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKA 219
           A      Y             ++A +LF ++  +GV P  VT++ ++    RM     + 
Sbjct: 189 ALSRAGRY-------------ERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRI 235

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           V   E M + G +PD  T S++I A GR G ++ A   ++  +          ++ L+++
Sbjct: 236 VALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQV 295

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +G AGN+   L V +EM+  G +P+ +TYN L  T  RA    +       MT  GL PN
Sbjct: 296 FGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPN 355

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY +++ AY      ++ L+++  MK+ G   +V  YN +  M           E+ E
Sbjct: 356 TFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLE 415

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +M S   C P+  T+++M+ +C  RG       + N M   G E +     +LI  YG+ 
Sbjct: 416 EM-SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRC 474

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
                  +  + +   G TP       LLNV+++
Sbjct: 475 GSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSR 508



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 149/329 (45%), Gaps = 4/329 (1%)

Query: 155 FTNKLKASKEV---ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
           F   LKA   V   + YN  ++VF K  +  +A R+  +M D G +PD VT++ L     
Sbjct: 273 FFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYA 332

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
                 +A +  + M S G  P+  TY++++ AY   G V+ A  L+DR +   +  + N
Sbjct: 333 RAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVN 392

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
            ++ +  + G    F   L + EEM   G  PN +T+N +L   G+      V  +   M
Sbjct: 393 TYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGM 452

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G+  + +TY +L+ AYGR         +Y EM   G    +T YN LL + +  G  
Sbjct: 453 KSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDW 512

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
             A  I   M  +   +P+  ++S ++   +  G  +  E++  E+      P+  +L +
Sbjct: 513 STAQSIVSKMLKN-GFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRT 571

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPD 480
           L+    K +R + V +A   +   G  PD
Sbjct: 572 LVIANFKCRRLEGVEKAFQEVKAQGYKPD 600



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 147/313 (46%), Gaps = 1/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  M  +     +D+A  LFD M   G  P+  T++ +       +     +E  E M 
Sbjct: 359 YNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMS 418

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P+ +T+++M+   G+ G  +    + +  ++    +  + ++TLI  YG  G+  
Sbjct: 419 RSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRT 478

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +Y+EM + G  P + TYN LL+ + R       ++I  +M  NG  PN  +Y+ LL
Sbjct: 479 YAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLL 538

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           + Y +        S+ +E+    +  S  +  TL+         +   + F+++K+ +  
Sbjct: 539 QCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKA-QGY 597

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD   F+SM+ + +  G  S+A  MF+ + ++G  P+L    SL+  Y K+  + +  +
Sbjct: 598 KPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEK 657

Query: 468 ALNRLPELGITPD 480
            L +L    + PD
Sbjct: 658 ILKQLKSSQVKPD 670



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 154/331 (46%), Gaps = 1/331 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALAL     K      V  YN+   +  K         + ++M   G  P+ VT++T+++
Sbjct: 375 ALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLA 434

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 + +        M S G +    TY+++I AYGR G+   AF +YD   +  +  
Sbjct: 435 VCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTP 494

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
               ++ L+ +    G++    ++  +M   G KPN  +Y+ LL    +      +++I 
Sbjct: 495 CLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIE 554

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           KE+    + P+W    +L+ A  + R  E     ++E+K +G +  + ++N++LAM A  
Sbjct: 555 KEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKN 614

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G   +A E+F+ +K S    PD  T++S++ + +   +  EAE +  ++  +  +P++  
Sbjct: 615 GLYSKATEMFDSIKQS-GLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVS 673

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             ++I  + K     +  R L+ +   G+ P
Sbjct: 674 YNTVINGFCKQGLIKEAQRILSEMIADGMAP 704



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 145/314 (46%), Gaps = 1/314 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +N  + V  K    D   R+ + M   GV+    T++TLIS          A + ++ 
Sbjct: 427 VTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDE 486

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S G  P   TY+++++   R G+   A  +  +     ++ +  ++S L++ Y   GN
Sbjct: 487 MISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGN 546

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
             G  ++ +E+    + P+ +    L+    + +R   V+  ++E+   G  P+   + S
Sbjct: 547 AAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNS 606

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +L  Y +         ++  +K+ G+   +  YN+L+ M A    + EA +I + +KSS+
Sbjct: 607 MLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQ 666

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +PD  +++++I     +G + EA+ + +EM+  G  P +    +L+  Y   +  ++ 
Sbjct: 667 -VKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEA 725

Query: 466 VRALNRLPELGITP 479
              +N +    + P
Sbjct: 726 REVVNYMIHHNLKP 739



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 109/226 (48%), Gaps = 1/226 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VIL  + +  F KCR L+  E+ F ++  +G KPD V F+++++    N L +KA E F+
Sbjct: 567 VILRTLVIANF-KCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFD 625

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G  PD +TY+S++D Y ++     A  +  + ++ + + D  +++T+I  +   G
Sbjct: 626 SIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQG 685

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  +  EM A G+ P ++TY+ L+      +   + + +   M  + L P   TY 
Sbjct: 686 LIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYR 745

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
            ++ +Y +A+  ++      E+ +        L + L A   D  +
Sbjct: 746 RVVDSYCKAKRYDEAREFLSEISDTDQNFDQKLQHMLEARIKDAQF 791



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 10/108 (9%)

Query: 158 KLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
           +LK+S+   +V+ YN  +  F K   + +A+R+  +M+  G+ P  VT+ TL+       
Sbjct: 661 QLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLE 720

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           + N+A E    M      P  LTY  ++D+Y +A         YD AR
Sbjct: 721 MFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKR-------YDEAR 761


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 177/369 (47%), Gaps = 21/369 (5%)

Query: 118 DVFS---VLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKV 174
           DVFS   +L+ L D+   Q+ + +L+ M +                +  +V+ YN  +  
Sbjct: 162 DVFSYNNLLKGLCDENRSQEALELLHMMADDRGGG-----------SPPDVVSYNTVLNG 210

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F K  D DKA   + +MLDRG+ PD VT+S++I+        +KA+E    M   G  PD
Sbjct: 211 FFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 270

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNV 292
            +TY+S++  Y  +G  + A G   + R++   ++PN   +S+L+      G       +
Sbjct: 271 CMTYNSILHGYCSSGQPKEAIGTLKKMRSDG--VEPNVVTYSSLMNYLCKNGRSTEARKI 328

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           ++ M   G++P++ TY  LL          ++  +   M  NG+ P+ + +  L+ AY +
Sbjct: 329 FDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAK 388

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
               +  + V+ +M++ G+  +V  Y T++ +    G  D+A   FE M   E   P+  
Sbjct: 389 QEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQM-IDEGLTPNII 447

Query: 413 TFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            ++S+I  +C+C  K  +AE +  EML+ G   N     S+I  + K  R  +  +  + 
Sbjct: 448 VYTSLIHGLCTC-DKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDL 506

Query: 472 LPELGITPD 480
           +  +G+ PD
Sbjct: 507 MVRIGVKPD 515



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 149/320 (46%), Gaps = 6/320 (1%)

Query: 151 ALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ YF   +    +  +I+Y   +     C   DKAE L  +MLDRG+  + + F+++I 
Sbjct: 430 AMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIID 489

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    ++ + F+ M   G  PD +TY+++ID    AG ++ A  L     +   + 
Sbjct: 490 SHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKP 549

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   + TLI  Y      D  L +++EM + GV PN+ITYN +L  +   +R    K +Y
Sbjct: 550 DIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELY 609

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             +T +G     +TY  +L    +    ++ L +++ +    +QL    +N ++      
Sbjct: 610 VSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKC 669

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G  DEA ++F    S+    PD  T+S M      +G + E + +F  M E G   +  +
Sbjct: 670 GRMDEAKDLFA-AHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRM 728

Query: 449 LTSLIQCYGKAQRTDDVVRA 468
           L S+++   K  +  D+ RA
Sbjct: 729 LNSIVR---KLLQRGDITRA 745



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 135/307 (43%), Gaps = 11/307 (3%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFS-TLISCARMNNLPNKAVEWFERMPSFGCD---PDALT 237
           + A  +FD++L RG        +  L   AR +  P  AV  + RM   G     P   T
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVARHS--PAAAVSRYNRMARAGAGKVTPTVHT 94

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEM 296
           Y+ +I    RAG +++ F        + +R+D   F+ L+K L       D    V   M
Sbjct: 95  YAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRM 154

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN---GLSPNWNTYASLLRAYGRA 353
             +G  P++ +YNNLL  +    R  +   +   M D+   G  P+  +Y ++L  + + 
Sbjct: 155 TELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKE 214

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
              +   S Y EM ++G+   V  Y++++A        D+A E+   M  +    PD  T
Sbjct: 215 GDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMT 273

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           ++S++      G+  EA     +M   G EPN+   +SL+    K  R+ +  +  + + 
Sbjct: 274 YNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMT 333

Query: 474 ELGITPD 480
           + G+ PD
Sbjct: 334 KRGLEPD 340



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 167/394 (42%), Gaps = 48/394 (12%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           L D M+  G++PD+  F+ LI         ++A+  F +M   G +P+ + Y ++ID   
Sbjct: 363 LLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLC 422

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG-------------CLN-- 291
           ++G+V+ A   +++  +E    +   +++LI    T   +D              CLN  
Sbjct: 423 KSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTI 482

Query: 292 --------------------VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
                               +++ M  IGVKP++ITYN L+D    A +  +   +   M
Sbjct: 483 FFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASM 542

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G+ P+  TY +L+  Y R    +D L++++EM   G+  ++  YN +L        T
Sbjct: 543 VSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRT 602

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS-EAEAMFNEMLEAGFEPNLFVLT 450
             A E++  +  S   Q +  T+ ++I    C+  ++ EA  MF  +     +       
Sbjct: 603 AAAKELYVSITKS-GTQLELSTY-NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFN 660

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQTPKEELGKLVECVEKS 509
            +I    K  R D+           G+ PD R    +  N++ Q   EEL  L   +E++
Sbjct: 661 IMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEEN 720

Query: 510 NSK-----LGYVVKLLLEEQDIEGDFKKEATELF 538
                   L  +V+ LL+     GD  +  T LF
Sbjct: 721 GCSADSRMLNSIVRKLLQ----RGDITRAGTYLF 750


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 151/307 (49%), Gaps = 4/307 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +    K   L++A +LF  MLD G+ P  VT++ +I    +    ++A+E F+ M 
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMR 247

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S GC P   T++ +IDA+ + G ++ AF L  R  ++    D   +STLI    +    D
Sbjct: 248 SKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVD 307

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              ++ E+M     KP ++T N L+  + +A R  + + +   M  +G SP+  TY +L+
Sbjct: 308 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             + RA   E    +  +M  +G+  +V  Y  L++         EA  +F  MKSS  C
Sbjct: 368 HGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSS-GC 426

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+ +T++++I      G+V     +F EM+ AG  P+  V  +L     K+ R+    R
Sbjct: 427 APNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRS---AR 483

Query: 468 ALNRLPE 474
           AL  L E
Sbjct: 484 ALEILRE 490



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 144/299 (48%), Gaps = 5/299 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +    K   L+ A  LF  +L  GV P  V +++LI    M N  + A E F  M 
Sbjct: 13  YGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMN 72

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P  +TY+ MIDA  + G +E A  L  +   +    D   ++T++     +   +
Sbjct: 73  RRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVE 132

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L ++ EM+ +G  PN  ++N ++  + +  +  Q   ++ EM    + P+  +Y  L+
Sbjct: 133 EALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILI 192

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT-DEAFEIFEDMKSSE 405
               +A    +   +++ M + G+  S   YN ++  MC  + YT DEA E+F+ M+ S+
Sbjct: 193 DGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMC--LAYTLDEALELFKSMR-SK 249

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            C+P  +TF+ +I     RGK+ EA  +   M + G  P++   ++LI       R DD
Sbjct: 250 GCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDD 308



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 148/302 (49%), Gaps = 5/302 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
            D A  LF DM  RG  P  VT++ +I  +    +  +A +  ++M   G  PD +TY++
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           ++D   ++  VE A  L++    E+    PN  + +T+I         D    V+ EM+A
Sbjct: 121 VMDGLCKSSRVEEALLLFNEM--ERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEA 178

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
             + P+  +Y  L+D + +A +  +   +++ M D+G++P+  TY  ++     A   ++
Sbjct: 179 KDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDE 238

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            L +++ M+ KG + S   +N L+      G  DEAF + + M + +   PD  T+S++I
Sbjct: 239 ALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRM-TDDGHVPDVVTYSTLI 297

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
           +      +V +A  +  +M++   +P +    +LI    KA R  +    L+ +   G +
Sbjct: 298 SGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQS 357

Query: 479 PD 480
           PD
Sbjct: 358 PD 359



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 148/315 (46%), Gaps = 1/315 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YNV +    K   L++A  L   M++ G  PD VT++T++     ++   +A+  F  
Sbjct: 81  VTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNE 140

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   GC P+  +++++I    +   ++ A  ++     +    D  ++  LI     AG 
Sbjct: 141 MERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGK 200

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    +++ M   G+ P+ +TYN ++  M  A    +   ++K M   G  P+  T+  
Sbjct: 201 LNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNI 260

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ A+ +    ++   + + M + G    V  Y+TL++    +   D+A  + EDM   +
Sbjct: 261 LIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQ 320

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
            C+P   T +++I      G++ EA  + + M+ +G  P++    +L+  + +A +T+  
Sbjct: 321 -CKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERA 379

Query: 466 VRALNRLPELGITPD 480
              L+ +   G+ P+
Sbjct: 380 RELLSDMVARGLAPN 394



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 142/315 (45%), Gaps = 13/315 (4%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS----CARMNNLPNKAVEWF 223
           +N+ +    K   LD+A RL   M D G  PD VT+STLIS     AR+++    A    
Sbjct: 258 FNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDD----ARHLL 313

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M    C P  +T +++I    +AG ++ A  + D   +     D   ++TL+  +  A
Sbjct: 314 EDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRA 373

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +    +  +M A G+ PN++TY  L+  + +A R  +   ++ +M  +G +PN  TY
Sbjct: 374 GQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTY 433

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+  +  A   +  L ++ EM   G+     +Y TL A     G +  A EI  + + 
Sbjct: 434 TALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGR- 492

Query: 404 SENCQPDSW---TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
            E+ + ++W    +   +      GK+  A     +M+  G  P      SL+    K+ 
Sbjct: 493 -ESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSG 551

Query: 461 RTDDVVRALNRLPEL 475
           +  +    L  + +L
Sbjct: 552 QGGEARAVLEEIMDL 566



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 121/293 (41%), Gaps = 9/293 (3%)

Query: 117 DDVFSVLRCLGDDFLEQDCVII------LNNMTNPDTAALALTYFTNKLKASKEVILYNV 170
           D+ F +L+ + DD    D V        L ++   D A   L     K +    V+  N 
Sbjct: 272 DEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMV-KRQCKPTVVTQNT 330

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
            +    K   + +A  + D M+  G  PD VT++TL+          +A E    M + G
Sbjct: 331 LIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARG 390

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
             P+ +TY++++    +A  +  A G++ + ++     +   ++ LI  + +AG  DG L
Sbjct: 391 LAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGL 450

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            ++ EM   G+ P+ + Y  L   + ++ R  +   I +E  ++  S  W          
Sbjct: 451 KLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVD 510

Query: 351 GRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           G    G  E  L   R+M   G   +     +L+A     G   EA  + E++
Sbjct: 511 GLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 563


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 171/344 (49%), Gaps = 3/344 (0%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
           ++  M  PD   ++L     + +   ++  +N+ +K F  C  L  A   F  +   G+ 
Sbjct: 88  VVVRMERPDLV-ISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLH 146

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           PD VTF+TL+    + +  ++A+++F +M    C P+ +T++++++   R G +  A  L
Sbjct: 147 PDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMG 316
            DR   +  +     + T++      G+    LN+  +M+ +  + PN++ Y+ ++D++ 
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLC 266

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +  R    + ++ EM + G+ P+  TY S++  +  +    D   + +EM E+ +   V 
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            YN L+      G   EA E++++M       P++ T++SMI     + ++  AE MF  
Sbjct: 327 TYNALINAFVKEGKFFEAAELYDEML-PRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYL 385

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           M   G  P++F  T+LI  Y  A+R DD +  L+ +P  G+  +
Sbjct: 386 MATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVAN 429



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 146/321 (45%), Gaps = 25/321 (7%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S +V+ YN  +  F K     +A  L+D+ML RG+ P+ +T++++I      +  + A
Sbjct: 320 KISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAA 379

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
            + F  M + GC PD  T++++ID Y  A  ++    L           +   ++TLI  
Sbjct: 380 EDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHG 439

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +   G+ +  L++ ++M + GV P+++T N LLD                 + DNG    
Sbjct: 440 FCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDG----------------LCDNG---K 480

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
                 + +A  +++   D    +      G++  V  YN L+    + G   EA E++E
Sbjct: 481 LKDALEMFKAMQKSKMDLDASHPF-----NGVEPDVLTYNILICGLINEGKFLEAEELYE 535

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +M       PD+ T+SSMI     + ++ EA  MF  M    F PN+    +LI  Y KA
Sbjct: 536 EM-PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKA 594

Query: 460 QRTDDVVRALNRLPELGITPD 480
            R DD +     +   GI  D
Sbjct: 595 GRVDDGLELFCEMGRRGIVAD 615



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 146/308 (47%), Gaps = 13/308 (4%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AA  + Y       S +V  +   +  +   + +D    L  +M  RG+  + VT++TLI
Sbjct: 378 AAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLI 437

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
               +    N A++  ++M S G  PD +T ++++D     G ++ A  ++   +  K  
Sbjct: 438 HGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMD 497

Query: 268 ID---------PNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           +D         P+  +  I + G    G F     +YEEM   G+ P+ ITY++++D + 
Sbjct: 498 LDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLC 557

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +  R  +   ++  M     SPN  T+ +L+  Y +A   +D L ++ EM  +G+     
Sbjct: 558 KQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAI 617

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
           +Y TL+     VG  + A +IF++M SS    PD+ T  +M+T    + ++  A AM  +
Sbjct: 618 IYITLIYGFRKVGNINGALDIFQEMISS-GVYPDTITIRNMLTGFWSKEELERAVAMLED 676

Query: 437 M-LEAGFE 443
           + +  G++
Sbjct: 677 LQMSVGYQ 684



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 161/392 (41%), Gaps = 50/392 (12%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD--LDKAERLFDDMLDRG 195
           +L+ +   D  + AL +F    + +    +   T  +   CR+  + +A  L D M++ G
Sbjct: 155 LLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214

Query: 196 VKPDNVTFSTLIS--CARMNN----------------LPNKAV----------------- 220
           ++P  +T+ T++   C + +                 +PN  +                 
Sbjct: 215 LQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 221 -EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              F  M   G  PD  TY+SMI  +  +G    A  L       K   D   ++ LI  
Sbjct: 275 QNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +   G F     +Y+EM   G+ PN ITYN+++D   +  R    + ++  M   G SP+
Sbjct: 335 FVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 394

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             T+ +L+  Y  A+  +D + +  EM  +G+  +   YNTL+     VG  + A ++ +
Sbjct: 395 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ 454

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-----------GFEPNLFV 448
            M SS  C PD  T ++++      GK+ +A  MF  M ++           G EP++  
Sbjct: 455 QMISSGVC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLT 513

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              LI       +  +       +P  GI PD
Sbjct: 514 YNILICGLINEGKFLEAEELYEEMPHRGIVPD 545



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/419 (21%), Positives = 174/419 (41%), Gaps = 17/419 (4%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A++ F  M      P  + +  ++    R    ++   LY +   ++ R D  +F+ LIK
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIK 122

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            + +       L+ + ++  +G+ P+++T+  LL  +    R  +    + +M +    P
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRP 182

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N  T+ +L+    R     + +++   M E G+Q +   Y T++      G T  A  + 
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
             M+   +  P+   +S++I      G+ S+A+ +F EM E G  P+LF   S+I  +  
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL--GYV 516
           + R  D  + L  + E  I+PD      L+N   +      GK  E  E  +  L  G +
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKE-----GKFFEAAELYDEMLPRGII 357

Query: 517 VKLLLEEQDIEGDFKKE----ATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 572
              +     I+G  K++    A ++F  ++         C  D+     L++  C    +
Sbjct: 358 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATK------GCSPDVFTFTTLIDGYCGAKRI 411

Query: 573 GLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINT 631
              +E+  ++  R     ++   +L  G  L        DLS+ + S    P ++  NT
Sbjct: 412 DDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNT 470



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 140/320 (43%), Gaps = 12/320 (3%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F + + L+ A  LF DML     P  V F  L+        P+  +  +++M       D
Sbjct: 54  FHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCD 113

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
             +++ +I  +     +  A   + +        D   F+TL+            L+ + 
Sbjct: 114 IYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFH 173

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           +M     +PN++T+  L++ + R  R  +   +   M ++GL P   TY +++    +  
Sbjct: 174 QMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG 233

Query: 355 YGEDTLSVYREMKEKGMQL-SVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
                L++ R+M+E    + +V +Y+ ++ ++C D G   +A  +F +M+  +   PD +
Sbjct: 234 DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD-GRHSDAQNLFTEMQ-EKGIFPDLF 291

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T++SMI      G+ S+AE +  EMLE    P++    +LI  + K  +  +     + +
Sbjct: 292 TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEM 351

Query: 473 PELGITPD--------DRFC 484
              GI P+        D FC
Sbjct: 352 LPRGIIPNTITYNSMIDGFC 371


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 161/327 (49%), Gaps = 12/327 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  + +  K R  D A  L D M  R V+    TF+ LI       L ++AV  F RM 
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
            +GC PD + +S +I    R      A   +D  + +++  D   ++ L++ +  AG   
Sbjct: 214 DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLK-DRFEPDVIVYTNLVRGWCRAGEIS 272

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V++EMK  G++PN+ TY+ ++D + R  +  +   ++ +M D+G +PN  T+ +L+
Sbjct: 273 EAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLM 332

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSEN 406
           R + +A   E  L VY +MK+ G +     YN L+ A C D    + A ++   M   + 
Sbjct: 333 RVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENL-ENAVKVLNTM-IKKK 390

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
           C+ ++ TF+++      +  V+ A  M+++M+EA  EPN      L++ +  ++ TD V+
Sbjct: 391 CEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVL 450

Query: 467 RALNRLPELGITPD--------DRFCG 485
           +    + +  + P+          FCG
Sbjct: 451 KMKKEMDDKEVEPNVNTYRLLVTMFCG 477



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 120/238 (50%), Gaps = 1/238 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  Y++ +    +C  + +A  +F DMLD G  P+ +TF+ L+          K ++ + 
Sbjct: 290 VYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYN 349

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M   GC+PD +TY+ +I+A+ R  N+E A  + +    +K  ++ + F+T+ +      
Sbjct: 350 QMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKR 409

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           + +G   +Y +M     +PN +TYN L+     +K    V  + KEM D  + PN NTY 
Sbjct: 410 DVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYR 469

Query: 345 SLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            L+  +    +  +   +++EM +EK +  S++LY  +LA     G   +  E+ E M
Sbjct: 470 LLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKM 527



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 155/308 (50%), Gaps = 3/308 (0%)

Query: 137 IILNNMTNPDTAALALTYFTN-KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           I+++N++    A+ A ++F + K +   +VI+Y   ++ + +  ++ +AE++F +M   G
Sbjct: 226 IVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAG 285

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           ++P+  T+S +I         ++A + F  M   GC P+A+T+++++  + +AG  E   
Sbjct: 286 IEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVL 345

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            +Y++ +      D   ++ LI+ +    N +  + V   M     + N  T+N +   +
Sbjct: 346 QVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYI 405

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            + +       +Y +M +    PN  TY  L+R +  ++  +  L + +EM +K ++ +V
Sbjct: 406 EKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNV 465

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMF 434
             Y  L+ M   +G+ + A+++F++M   E C   S +   M+     R G++ + E + 
Sbjct: 466 NTYRLLVTMFCGMGHWNNAYKLFKEM-VEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELV 524

Query: 435 NEMLEAGF 442
            +M++ G 
Sbjct: 525 EKMIQKGL 532


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 140/290 (48%), Gaps = 3/290 (1%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           M D G +P+ VT+++LI     NN P++A E FE M S  C P  +TY++++D   R G 
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
           +E A  L+    + +   D  +F+ L+     AG  +  L  + +M      PN+ITY+ 
Sbjct: 61  LERAMALFQEMLDRRSH-DVISFNILVTGLCRAGKIETALEFFRKMDD-RCSPNVITYSV 118

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L+D + +A R  Q   + + M   G SP+  TY  L+    +         V REM + G
Sbjct: 119 LIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG 178

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
              ++  YN+LL          +A  +  DM +   C P+  T+ ++I      G+V +A
Sbjct: 179 CVPNLVTYNSLLHGLCRARRVSDALALMRDM-TCRGCTPNVVTYGTLIDGLCKVGRVKDA 237

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            AM  +M++ G  P+L +   LI    KA + D+ +  L R    GI PD
Sbjct: 238 CAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPD 287



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 142/336 (42%), Gaps = 39/336 (11%)

Query: 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFS 204
           PD A   L      ++ S  ++ YN  +    +   L++A  LF +MLDR    D ++F+
Sbjct: 26  PDRAQ-ELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRR-SHDVISFN 83

Query: 205 TLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
            L++          A+E+F +M    C P+ +TYS +ID   +A  V  A  L       
Sbjct: 84  ILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYSVLIDGLCKANRVSQAVEL------- 135

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
                                        E MKA G  P++ITY  L+D + +  +    
Sbjct: 136 ----------------------------LESMKARGCSPDVITYTILVDGLCKESKVAAA 167

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
             + +EM D G  PN  TY SLL    RAR   D L++ R+M  +G   +V  Y TL+  
Sbjct: 168 WEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDG 227

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
              VG   +A  +  DM       PD   ++ +I       +V E+ A+    +  G +P
Sbjct: 228 LCKVGRVKDACAMLADMIDKGG-TPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKP 286

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           ++   +S+I    ++ R D+  R L  +   G  PD
Sbjct: 287 DVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPD 322



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 152/348 (43%), Gaps = 10/348 (2%)

Query: 137 IILNNMTNPDTAALALTYFTNKL--KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I++  +        AL +F  K+  + S  VI Y+V +    K   + +A  L + M  R
Sbjct: 84  ILVTGLCRAGKIETALEFF-RKMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKAR 142

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G  PD +T++ L+      +    A E    M   GC P+ +TY+S++    RA  V  A
Sbjct: 143 GCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDA 202

Query: 255 FGLYDRARNEKWR-IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
             L    R+   R   PN   + TLI      G       +  +M   G  P+++ YN L
Sbjct: 203 LALM---RDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNML 259

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           ++ + +A +  +   + +     G+ P+  TY+S++    R+   ++   +   +K +G 
Sbjct: 260 INGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGC 319

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
              V LY+TL+      G  DEAF+++E M + + C  D  T+S++I      G+V EA 
Sbjct: 320 PPDVILYSTLIDGLCKAGKVDEAFDLYEVM-TGDGCDADVVTYSTLIDGLCKAGRVDEAH 378

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
            +   M+  G  P+     SLI+        D+ +  +  +      P
Sbjct: 379 LLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAP 426



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 154/352 (43%), Gaps = 38/352 (10%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +VI Y + +    K   +  A  +  +MLD G  P+ VT+++L+         + A+ 
Sbjct: 145 SPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALA 204

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
               M   GC P+ +TY ++ID   + G V+ A  +     ++    D   ++ LI    
Sbjct: 205 LMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLC 264

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNN------------------------------- 310
            A   D  + +     + G+KP+++TY++                               
Sbjct: 265 KADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVI 324

Query: 311 ----LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
               L+D + +A +  +   +Y+ MT +G   +  TY++L+    +A   ++   +   M
Sbjct: 325 LYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARM 384

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRG 425
              G   S   YN+L+    D+ + DEA E+ E+M+ S NC P + T++ +I  +C    
Sbjct: 385 VRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERS-NCAPSAVTYNILIHGMCRMER 443

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR-ALNRLPELG 476
             S A   F EM++ G  P+    + L++   K++   ++    L+++ +LG
Sbjct: 444 VDSAALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLG 495



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 121/271 (44%), Gaps = 2/271 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALAL         +  V+ Y   +    K   +  A  +  DM+D+G  PD + ++ LI+
Sbjct: 202 ALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLIN 261

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                +  ++++    R  S G  PD +TYSS+I    R+  ++ A  L    ++     
Sbjct: 262 GLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPP 321

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +STLI     AG  D   ++YE M   G   +++TY+ L+D + +A R  +   + 
Sbjct: 322 DVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLL 381

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD 387
             M   G  P+  TY SL++      + ++ + +  EM+      S   YN L+  MC  
Sbjct: 382 ARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRM 441

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
                 A + F++M  +    PD  T+S ++
Sbjct: 442 ERVDSAALDYFQEMIDN-GVIPDHITYSILL 471


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 176/374 (47%), Gaps = 40/374 (10%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAV 220
           S  V  Y++ +    + + +D+A  L ++M+D G +P+ VT+ +L+S   +M  L  +AV
Sbjct: 84  SPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL-KEAV 142

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           + F RM   GC PD + Y+ +ID + + G++  A+ L++    +        +++L+  +
Sbjct: 143 DLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGF 202

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G F    +++++M   G  PN+ T+NNLLD   +     +   ++ EM   G  P+ 
Sbjct: 203 SRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDV 262

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            +Y +L+R         +   + REM   G+   +  YN L+   +  G  D A ++F +
Sbjct: 263 VSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYE 322

Query: 401 MKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLI--QCYG 457
           +  S   +PD++++S++I  C CR GKV  A  +F +M+  G  P+  V+  L+   C G
Sbjct: 323 IPKS-GLEPDAFSYSTIID-CLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRG 380

Query: 458 ---------------------------------KAQRTDDVVRALNRLPELGITPDDRFC 484
                                            KA+R+DDV    + L E G +PD    
Sbjct: 381 ERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEIS 440

Query: 485 GCLLNVMTQTPKEE 498
             +L  + ++  +E
Sbjct: 441 KVILETLRRSDDKE 454



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 141/313 (45%), Gaps = 1/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  ++V  K    D     ++DML  G  P+  T+  L+          +A   F  M 
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMA 79

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + GC P+  +YS +I    R   V+ A  L +   +   + +   + +L+      G   
Sbjct: 80  AQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLK 139

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             ++++  M   G  P+ + YN L+D   +     +   +++EM + G  P   TY SLL
Sbjct: 140 EAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLL 199

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             + R        S++++M  +G   ++  +N LL     +G   EA  +F +M+S   C
Sbjct: 200 SGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSL-GC 258

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD  ++++++     +GK  EA+ +  EM+ +G  P++     LI  Y K+   D  ++
Sbjct: 259 PPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIK 318

Query: 468 ALNRLPELGITPD 480
               +P+ G+ PD
Sbjct: 319 LFYEIPKSGLEPD 331



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           +++ L+++   +G  D     Y +M   G  PN  TY  LL ++ +A+R  + +++++ M
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G SPN  +Y+ L+    R +  ++   +  EM + G Q +V  Y +LL+    +G  
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
            EA ++F  M     C PD   ++ +I   S +G + EA  +F EMLE G  P +F   S
Sbjct: 139 KEAVDLFSRM-VYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNS 197

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 484
           L+  + +      V      +   G  P+        D FC
Sbjct: 198 LLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFC 238



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 115/266 (43%), Gaps = 9/266 (3%)

Query: 126 LGDDFLEQDCV-------IILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFR 176
           L ++ LE+ C+        +L+  +         + F + L+      +  +N  +  F 
Sbjct: 179 LFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFC 238

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K  D+ +A RLF +M   G  PD V+++TL+        P++A      M   G  PD +
Sbjct: 239 KMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIV 298

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           +Y+ +ID Y ++G ++ A  L+          D  ++ST+I     AG       V+++M
Sbjct: 299 SYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDM 358

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
            A G  P+      L+  + R +R  +   +++ M      P    Y  L+    +A+  
Sbjct: 359 IANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRS 418

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLL 382
           +D   ++ E+ E+G    V +   +L
Sbjct: 419 DDVCEIFHELTERGFSPDVEISKVIL 444



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 1/174 (0%)

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           ++YN LL+ + ++ R   V   Y +M   G  PN  TY  LLR+  +A+  E+  SV+R 
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M  +G   +V  Y+ L+A        DEA E+  +M    + QP+  T+ S+++     G
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGH-QPNVVTYGSLLSGLCKMG 136

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           K+ EA  +F+ M+  G  P+  V   LI  + K     +  R    + E G  P
Sbjct: 137 KLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIP 190


>gi|410110113|gb|AFV61136.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           filifolia]
          Length = 439

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 84  DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVF 143

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 144 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 201

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 202 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 261

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 262 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 321

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 322 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKK 376

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 377 XSNVVEVFDKMRGLGYFPDSDVIAIVLN 404



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 151/330 (45%), Gaps = 36/330 (10%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LFD+M  R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   
Sbjct: 2   LFDEMRRRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 61

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           +  +   A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTD--------------------------------- 333
           +Y+ LL      K+  +  +++ EM +                                 
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 334 --NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 241

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  +
Sbjct: 242 EKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 300

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +I  Y +A       R L+ L      P D
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKRPDNIPRD 330



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 1/205 (0%)

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 1   GLFDEMRRRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELS 60

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +     +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  + 
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
           T Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 121 TSYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFW 179

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQ 460
            M + G EPN+    +L++ YG A+
Sbjct: 180 GMRKMGIEPNVVSYNTLLRVYGDAE 204



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 4/235 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 209 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 268

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 269 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 324

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 325 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKXSNVVEVF 384

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
            +M   G  P+ +  A +L AYG+ +  +    VY EM+E G   S  ++  +L+
Sbjct: 385 DKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVGCVFSDEVHFQMLS 439



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 130/278 (46%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 159 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 218

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 219 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 276

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 277 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 335

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 336 LAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKXSNVVEVFDKMRGL-G 391

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   +    + +  GK+ E   A  ++ EM E G
Sbjct: 392 YFPDSDVIA---IVLNAYGKLQEFDKANDVYMEMQEVG 426


>gi|255661170|gb|ACU25754.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 426

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 174/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 63  AISIFS-RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 179

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++   
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAY 299

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG   +
Sbjct: 300 ERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKD 354

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 355 ITVFERMIHLFSKYKKYGNVVVVFDKMRGLGYFPDSNVIALVLN 398



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G + +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 137/288 (47%), Gaps = 1/288 (0%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +  
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                 K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G D D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVVVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 93/222 (41%), Gaps = 36/222 (16%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G                  
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAG------------------ 109

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
                               P++ ++S+++T+     K  EA ++F EM E     +L  
Sbjct: 110 ------------------VTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTT 151

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
              +I  YG+     +  +    + ++GI P+      LL V
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRV 193



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 42.7 bits (99), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 1/130 (0%)

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           +E+ +      Y+TL+      G  D A    + M+  +    D   +S++I +      
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ-DRVPGDLVLYSNLIELSRKLCD 59

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            S+A ++F+ +  +GF P+L    ++I  +GKA+   +    ++ +   G+TP+      
Sbjct: 60  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYST 119

Query: 487 LLNVMTQTPK 496
           LL +  +  K
Sbjct: 120 LLTMYVENKK 129


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 178/394 (45%), Gaps = 17/394 (4%)

Query: 101 SLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLK 160
           +L++ A+D  +  A   ++  V+R LG +        +L+ M  P  + L +  +T  L 
Sbjct: 40  ALLRWASDEGAADAAALEM--VVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLH 97

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKA 219
           A      Y             ++A +LF ++  +GV P  VT++ ++    RM     + 
Sbjct: 98  ALSRAGRY-------------ERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRI 144

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           V   E M + G +PD  T S++I A GR G ++ A   ++  +          ++ L+++
Sbjct: 145 VALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQV 204

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +G AGN+   L V +EM+  G +P+ +TYN L  T  RA    +       MT  GL PN
Sbjct: 205 FGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPN 264

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY +++ AY      ++ L+++  MK+ G   +V  YN +  M           E+ E
Sbjct: 265 TFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLE 324

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +M S   C P+  T+++M+ +C  RG       + N M   G E +     +LI  YG+ 
Sbjct: 325 EM-SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRC 383

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
                  +  + +   G TP       LLNV+++
Sbjct: 384 GSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSR 417



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 149/329 (45%), Gaps = 4/329 (1%)

Query: 155 FTNKLKASKEV---ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
           F   LKA   V   + YN  ++VF K  +  +A R+  +M D G +PD VT++ L     
Sbjct: 182 FFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYA 241

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
                 +A +  + M S G  P+  TY++++ AY   G V+ A  L+DR +   +  + N
Sbjct: 242 RAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVN 301

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
            ++ +  + G    F   L + EEM   G  PN +T+N +L   G+      V  +   M
Sbjct: 302 TYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGM 361

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G+  + +TY +L+ AYGR         +Y EM   G    +T YN LL + +  G  
Sbjct: 362 KSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDW 421

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
             A  I   M  +   +P+  ++S ++   +  G  +  E++  E+      P+  +L +
Sbjct: 422 STAQSIVSKMLKN-GFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRT 480

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPD 480
           L+    K +R + V +A   +   G  PD
Sbjct: 481 LVIANFKCRRLEGVEKAFQEVKAQGYKPD 509



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 147/313 (46%), Gaps = 1/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  M  +     +D+A  LFD M   G  P+  T++ +       +     +E  E M 
Sbjct: 268 YNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMS 327

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P+ +T+++M+   G+ G  +    + +  ++    +  + ++TLI  YG  G+  
Sbjct: 328 RSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRT 387

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +Y+EM + G  P + TYN LL+ + R       ++I  +M  NG  PN  +Y+ LL
Sbjct: 388 YAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLL 447

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           + Y +        S+ +E+    +  S  +  TL+         +   + F+++K+ +  
Sbjct: 448 QCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKA-QGY 506

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD   F+SM+ + +  G  S+A  MF+ + ++G  P+L    SL+  Y K+  + +  +
Sbjct: 507 KPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEK 566

Query: 468 ALNRLPELGITPD 480
            L +L    + PD
Sbjct: 567 ILKQLKSSQVKPD 579



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 154/331 (46%), Gaps = 1/331 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALAL     K      V  YN+   +  K         + ++M   G  P+ VT++T+++
Sbjct: 284 ALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLA 343

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 + +        M S G +    TY+++I AYGR G+   AF +YD   +  +  
Sbjct: 344 VCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTP 403

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
               ++ L+ +    G++    ++  +M   G KPN  +Y+ LL    +      +++I 
Sbjct: 404 CLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIE 463

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           KE+    + P+W    +L+ A  + R  E     ++E+K +G +  + ++N++LAM A  
Sbjct: 464 KEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKN 523

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G   +A E+F+ +K S    PD  T++S++ + +   +  EAE +  ++  +  +P++  
Sbjct: 524 GLYSKATEMFDSIKQS-GLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVS 582

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             ++I  + K     +  R L+ +   G+ P
Sbjct: 583 YNTVINGFCKQGLIKEAQRILSEMIADGMAP 613



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 145/314 (46%), Gaps = 1/314 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +N  + V  K    D   R+ + M   GV+    T++TLIS          A + ++ 
Sbjct: 336 VTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDE 395

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S G  P   TY+++++   R G+   A  +  +     ++ +  ++S L++ Y   GN
Sbjct: 396 MISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGN 455

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
             G  ++ +E+    + P+ +    L+    + +R   V+  ++E+   G  P+   + S
Sbjct: 456 AAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNS 515

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +L  Y +         ++  +K+ G+   +  YN+L+ M A    + EA +I + +KSS+
Sbjct: 516 MLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQ 575

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +PD  +++++I     +G + EA+ + +EM+  G  P +    +L+  Y   +  ++ 
Sbjct: 576 -VKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEA 634

Query: 466 VRALNRLPELGITP 479
              +N +    + P
Sbjct: 635 REVVNYMIHHNLKP 648



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 109/226 (48%), Gaps = 1/226 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VIL  + +  F KCR L+  E+ F ++  +G KPD V F+++++    N L +KA E F+
Sbjct: 476 VILRTLVIANF-KCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFD 534

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G  PD +TY+S++D Y ++     A  +  + ++ + + D  +++T+I  +   G
Sbjct: 535 SIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQG 594

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  +  EM A G+ P ++TY+ L+      +   + + +   M  + L P   TY 
Sbjct: 595 LIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYR 654

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
            ++ +Y +A+  ++      E+ +        L + L A   D  +
Sbjct: 655 RVVDSYCKAKRYDEAREFLSEISDTDQNFDQKLQHMLEARIKDAQF 700



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 10/108 (9%)

Query: 158 KLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
           +LK+S+   +V+ YN  +  F K   + +A+R+  +M+  G+ P  VT+ TL+       
Sbjct: 570 QLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLE 629

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           + N+A E    M      P  LTY  ++D+Y +A         YD AR
Sbjct: 630 MFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKR-------YDEAR 670


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 156/332 (46%), Gaps = 2/332 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I Y+  +  + K    D A RLFD+M D  ++P    ++TL+          KA++ F
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLF 291

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   GC P   TY+ +I   G+AG VE A+ LY     +    D    + L+ + G  
Sbjct: 292 EEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKV 351

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNT 342
           G  +   NV+ EM      P +++YN ++  +  +K P  +V + + +M  +G+SP+  T
Sbjct: 352 GRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFT 411

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y+ L+  Y +    E  L +  EM EKG       Y +L+         + A E+F+++K
Sbjct: 412 YSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELK 471

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            +      S  ++ MI      GK+SEA  +FNEM   G  P+++   +L+    KA   
Sbjct: 472 ENFG-NVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMV 530

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           ++    L ++ E G T D      +LN   +T
Sbjct: 531 NEANSLLRKMEENGCTADINSHNIILNGFART 562



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 144/305 (47%), Gaps = 3/305 (0%)

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG- 230
           +K   + + + KA  +F     R  KP + T++++I          K  E +  M + G 
Sbjct: 169 VKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD 228

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           C PD +TYS++I +Y + G  + A  L+D  ++   +     ++TL+ +Y   G  +  L
Sbjct: 229 CFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKAL 288

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
           +++EEMK  G  P + TY  L+  +G+A R  +   +YK M  +GL+P+     +L+   
Sbjct: 289 DLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNIL 348

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQP 409
           G+    E+  +V+ EM       +V  YNT++ A+        E    F+ MK ++   P
Sbjct: 349 GKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMK-ADGVSP 407

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
             +T+S +I       +V +A  +  EM E GF P      SLI   GKA+R +      
Sbjct: 408 SEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELF 467

Query: 470 NRLPE 474
             L E
Sbjct: 468 KELKE 472



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 140/307 (45%), Gaps = 2/307 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE-W 222
           +V+  N  M +  K   L++   +F++M      P  V+++T+I     +  P   V  W
Sbjct: 337 DVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSW 396

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F++M + G  P   TYS +ID Y +   VE A  L +    + +   P A+ +LI   G 
Sbjct: 397 FDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGK 456

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           A  ++    +++E+K      +   Y  ++   G+  +  +   ++ EM + G  P+   
Sbjct: 457 AKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYA 516

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +L+    +A    +  S+ R+M+E G    +  +N +L   A  G    A E+FE MK
Sbjct: 517 YNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMK 576

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
                +PD  T+++++   +  G   EA  +  EM + GFE +    +S++   G     
Sbjct: 577 HC-GIKPDGVTYNTLLGCFAHAGMFEEAARLMREMKDKGFEYDAITYSSILDAVGNMDHE 635

Query: 463 DDVVRAL 469
            D V +L
Sbjct: 636 KDDVSSL 642



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 141/309 (45%), Gaps = 9/309 (2%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKL------KASKEVILYNV 170
           ++ + + + +  D L  D V+ LNN+ N       L   TN        + +  V+ YN 
Sbjct: 320 EEAYDLYKNMLTDGLTPD-VVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNT 378

Query: 171 TMK-VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
            +K +F     + +    FD M   GV P   T+S LI      N   KA+   E M   
Sbjct: 379 VIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEK 438

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
           G  P    Y S+I+A G+A   E A  L+   +     +    ++ +IK +G  G     
Sbjct: 439 GFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEA 498

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           ++++ EMK  G  P++  YN L+  M +A    +  ++ ++M +NG + + N++  +L  
Sbjct: 499 VDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHNIILNG 558

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
           + R       + ++  MK  G++     YNTLL   A  G  +EA  +  +MK  +  + 
Sbjct: 559 FARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAARLMREMK-DKGFEY 617

Query: 410 DSWTFSSMI 418
           D+ T+SS++
Sbjct: 618 DAITYSSIL 626



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 147/310 (47%), Gaps = 11/310 (3%)

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
           +K+F+   D +KA  +        +K D+    +++      N+  +  +W  +  +F  
Sbjct: 71  VKIFKWGPDAEKALEVLK------LKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNF-- 122

Query: 232 DPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
             D  TY ++I     A    EM   + +  RN    + P   S L+K  G A      L
Sbjct: 123 QHDCSTYMALIRCLEEARLYGEMYRTIQEVVRNTYVSVGPVVLSELVKALGRAKMVSKAL 182

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRA 349
           +V+ + K    KP   TYN+++  + +  +  +V  +Y EM + G   P+  TY++L+ +
Sbjct: 183 SVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISS 242

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
           Y +    +  + ++ EMK+  MQ +  +Y TLL +   VG  ++A ++FE+MK +  C P
Sbjct: 243 YEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRA-GCSP 301

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
             +T++ +I      G+V EA  ++  ML  G  P++  L +L+   GK  R +++    
Sbjct: 302 TVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVF 361

Query: 470 NRLPELGITP 479
           N +     TP
Sbjct: 362 NEMGTWRCTP 371



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 131/300 (43%), Gaps = 3/300 (1%)

Query: 201 VTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR 260
           V  S L+       + +KA+  F +     C P + TY+S+I    + G  E    +Y  
Sbjct: 163 VVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTE 222

Query: 261 ARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
             NE     D   +S LI  Y   G  D  + +++EMK   ++P    Y  LL    +  
Sbjct: 223 MCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVG 282

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
           +  +   +++EM   G SP   TY  L++  G+A   E+   +Y+ M   G+   V   N
Sbjct: 283 KVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLN 342

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEML 438
            L+ +   VG  +E   +F +M  +  C P   +++++I  +   +  VSE  + F++M 
Sbjct: 343 NLMNILGKVGRLEELTNVFNEM-GTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMK 401

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
             G  P+ F  + LI  Y K  R +  +  L  + E G  P       L+N + +  + E
Sbjct: 402 ADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYE 461


>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
          Length = 905

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 159/317 (50%), Gaps = 3/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           +I Y   + ++ K   + KA  +  +M   G+K +N T+S LI+    +++  N A   F
Sbjct: 443 IISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFAN-AFAIF 501

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  PD   Y+ +I+A+ + GN++ A  + ++ + E+ +    AF  +I+ Y  A
Sbjct: 502 EEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVA 561

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+    L+  + M+  G  P ++TYN L+  + R  +  +  ++  +M+  G++PN +TY
Sbjct: 562 GDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTY 621

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++R Y  +         + ++KE G++L V +Y TLL  C   G    A  +  +M S
Sbjct: 622 TIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM-S 680

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +    +++ ++ +I   + RG V EAE +  +M E G  PN+   TS I    KA    
Sbjct: 681 FQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQ 740

Query: 464 DVVRALNRLPELGITPD 480
              + +  + ++G+ P+
Sbjct: 741 RAEKVIEEMVDVGLKPN 757



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 149/342 (43%), Gaps = 7/342 (2%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D   L   +   KL        + + +  + K  D   A   F++M  RG++P+   F++
Sbjct: 278 DVLDLTYPFLFKKLLHEPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTS 337

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR------AGNVEMAFGLYD 259
           L+    +      A+   E M S G +   +TYS +I  + +      +GN+E A  L  
Sbjct: 338 LVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSHQSGNMERAEELVR 397

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
               +      + + +++  Y    N + CL V+E +K  G KP++I+Y  LL+   +  
Sbjct: 398 EMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIG 457

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
           +  +  +I KEM   G+  N  TY+ L+  +       +  +++ EM   G+Q    +YN
Sbjct: 458 KVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYN 517

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
            L+     +G  D A  I E M+  E  QP +  F  +I   +  G +  A    + M  
Sbjct: 518 LLIEAFCKMGNMDRAICILEKMQ-KERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRR 576

Query: 440 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +G  P +    +LI    +  +    V  L+++   GITP++
Sbjct: 577 SGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNE 618



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 117/251 (46%), Gaps = 1/251 (0%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D+  A    D M   G  P  +T++ LI      +   +AV   ++M   G  P+  TY+
Sbjct: 563 DMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYT 622

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            ++  Y  +G++  AF  + + +    ++D   + TL++    +G     L V  EM   
Sbjct: 623 IIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQ 682

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
            +  N   YN L+D   R    W+ + + K+M ++G+ PN +TY S + A  +A   +  
Sbjct: 683 KIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRA 742

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
             V  EM + G++ +V  Y TL+   A V   D A + FE+MK +   +PD  ++  ++T
Sbjct: 743 EKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLA-GLKPDEASYHCLVT 801

Query: 420 ICSCRGKVSEA 430
               R  V E 
Sbjct: 802 SLLSRATVMEG 812



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 103/218 (47%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +    +   + +A  + D M   G+ P+  T++ ++     +    KA E+F 
Sbjct: 583 VMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFT 642

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           ++   G   D   Y +++ A  ++G ++ A  +      +K   +   ++ LI  +   G
Sbjct: 643 KIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRG 702

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           +     ++ ++MK  GV PN+ TY + ++   +A    + + + +EM D GL PN  TY 
Sbjct: 703 DVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYT 762

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +L++ + R    +  L  + EMK  G++     Y+ L+
Sbjct: 763 TLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLV 800



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/326 (21%), Positives = 128/326 (39%), Gaps = 47/326 (14%)

Query: 261 ARNEKWRIDPNAFSTLIKLYGT-AGNFDGC---LNVYEE-----MKAIGVKPNMITYNNL 311
           +R + W+   +AF  + KL G  +  F  C   L+V +       K +  +P+   +  +
Sbjct: 244 SRPDNWQAVVSAFERIPKLSGVVSAYFPLCKQSLDVLDLTYPFLFKKLLHEPSRREFGLM 303

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +    +       +  ++ M   G+ PN   + SL+ AY  AR     LS   EMK +G+
Sbjct: 304 IVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGL 363

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
           +L++  Y+ L++  A +  + ++                              G +  AE
Sbjct: 364 ELTIVTYSILISGFAKINDSHQS------------------------------GNMERAE 393

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            +  EM E G +  + V  S++  Y   Q  +  +    RL E G  P     GCLLN+ 
Sbjct: 394 ELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLY 453

Query: 492 TQTPKE----ELGKLVEC--VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 545
            +  K      + K +E   ++ +N     ++   +   D    F      L + +  D 
Sbjct: 454 VKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPD- 512

Query: 546 KKAYCNCLIDLCVNLNLLENACKLLE 571
            +A  N LI+    +  ++ A  +LE
Sbjct: 513 -RAIYNLLIEAFCKMGNMDRAICILE 537



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 89/202 (44%), Gaps = 43/202 (21%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           +ALA+T   +  K  +   +YN+ +  + +  D+ +AE L   M + GV P+  T+++ I
Sbjct: 671 SALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYI 730

Query: 208 -SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
            +C +  ++  +A +  E M   G  P+  TY+++I  + R         L DRA     
Sbjct: 731 NACCKAGDM-QRAEKVIEEMVDVGLKPNVKTYTTLIKGWARV-------SLPDRA----- 777

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD------TMGRAKR 320
                                  L  +EEMK  G+KP+  +Y+ L+       T+     
Sbjct: 778 -----------------------LKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGST 814

Query: 321 PWQVKTIYKEMTDNGLSPNWNT 342
              + ++ +EM++N L+ +  T
Sbjct: 815 YTGIISVCREMSENDLTVDLRT 836


>gi|410110075|gb|AFV61117.1| pentatricopeptide repeat-containing protein 123, partial
           [Burroughsia fastigiata]
          Length = 348

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 174/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK+S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 6   AISIFS-RLKSSGYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYSTLL 64

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 65  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 122

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 123 IEPNVVSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 182

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM   G+ PN  TY++++  +G+    +    ++++++  G ++   L+ T++   
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAY 242

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG   +
Sbjct: 243 ERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKD 297

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 298 ITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 341


>gi|410110111|gb|AFV61135.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           duartei]
          Length = 381

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 172/343 (50%), Gaps = 11/343 (3%)

Query: 151 ALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A++ F+   +L    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++
Sbjct: 23  AISIFSRLKRLGFXPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTTSYSTLLT 82

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  I
Sbjct: 83  MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGI 140

Query: 269 DPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           +PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +   
Sbjct: 141 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 200

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++    
Sbjct: 201 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQILFQTMIVAYE 260

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG   ++
Sbjct: 261 RAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQXIDAGEVKDI 315

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
            V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 316 TVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 358



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 163 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 222

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 223 IWGKVGKLDRAAXLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 278

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 279 DNIPRDTAIHILAGAGRIEEATYVFRQXIDAGEVKDITVFERMIHLLSKYKKYSNVVEVF 338

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ +  A +L AYG+ +  +    VY EM+E G
Sbjct: 339 DKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 380



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 130/278 (46%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 113 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 172

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 173 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 230

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 231 DRAAXLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 289

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 290 LAGAGRI---EEATYVFRQXIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGL-G 345

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   +    + +  GK+ E   A  ++ EM E G
Sbjct: 346 YFPDSDVIA---IVLNAYGKLQEFDKANDVYMEMQEVG 380


>gi|224141335|ref|XP_002324029.1| predicted protein [Populus trichocarpa]
 gi|222867031|gb|EEF04162.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A+ L  +M + GV PD V++STL+S    N    +A+  F
Sbjct: 211 DLVAYNSMINVFGKAKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALSVF 270

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+    + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 271 AEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMR--KMGIEPNVVSYNTLLRVYG 328

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
               F   ++++  M+   ++ N++TYN ++   G++    +   + +EM + G+ PN  
Sbjct: 329 ETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRGIEPNAI 388

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+A   +    ++++++  G+++   LY T++      G    A  +  ++
Sbjct: 389 TYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERSGLVAHAKRLLHEL 448

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K      PDS    + I I +  G++ EA  +F +  +AG   ++ V   ++  + + ++
Sbjct: 449 K-----HPDSIPRETAIKILARAGRIEEATWVFRQAFDAGEVKDISVFGCMVDLFSRNRK 503

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +V+    ++   G  PD      +LN
Sbjct: 504 PANVIEVFEKMRGAGYFPDSNVIALVLN 531



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 186/382 (48%), Gaps = 4/382 (1%)

Query: 102 LVKLAADLDSCSATEDDV--FSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKL 159
           LV +   L S S T++++  +S+L    D  L    ++ + +  +    +LAL  + N +
Sbjct: 41  LVDMTELLLSISQTQNELQLYSLLSPYKDRQLSIRFMVSVISRESDWQRSLALLDWINDI 100

Query: 160 -KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
            + S  V  YNV ++   + +  D A  LFD+M +R + PD  T+STLI+      + + 
Sbjct: 101 ARYSPSVFAYNVVLRNVLRAKQWDHAHGLFDEMRNRALAPDRYTYSTLITHFGKAGMFDA 160

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           ++ W ++M       D + YS++I+   +  +   A  ++ R +      D  A++++I 
Sbjct: 161 SLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMIN 220

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
           ++G A  F     + +EM+ +GV P+ ++Y+ LL      ++  +  +++ EM +     
Sbjct: 221 VFGKAKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPL 280

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  T   ++  YG+    ++   ++  M++ G++ +V  YNTLL +  +     EA  +F
Sbjct: 281 DLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLF 340

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
             M+  ++ + +  T+++MI +     +  +A  +  EM   G EPN    +++I  +GK
Sbjct: 341 RLMQ-KKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGK 399

Query: 459 AQRTDDVVRALNRLPELGITPD 480
           A + D       +L   G+  D
Sbjct: 400 AGKLDRAAMLFQKLRSSGVEID 421



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 167/368 (45%), Gaps = 50/368 (13%)

Query: 151 ALTYFT--NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL+ F   N+ K   ++   NV + V+ +     +A+RLF  M   G++P+ V+++TL+ 
Sbjct: 266 ALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLR 325

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 L  +A+  F  M     + + +TY++MI  YG++   E A  L    +N    I
Sbjct: 326 VYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRG--I 383

Query: 269 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL--------------- 311
           +PNA  +ST+I ++G AG  D    +++++++ GV+ + + Y  +               
Sbjct: 384 EPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERSGLVAHAKR 443

Query: 312 ----------------LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
                           +  + RA R  +   ++++  D G   + + +  ++  + R R 
Sbjct: 444 LLHELKHPDSIPRETAIKILARAGRIEEATWVFRQAFDAGEVKDISVFGCMVDLFSRNRK 503

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
             + + V+ +M+  G      +   +L     +   ++A  ++++M+  E   PD   F 
Sbjct: 504 PANVIEVFEKMRGAGYFPDSNVIALVLNAYGKLHEFEKADALYKEMQEEECVFPDEVHF- 562

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNL------FVLTSLIQCYGKAQRTDDVVRAL 469
            M+++   R      EA+F E L++  +PN+       V+ S+   Y +  R +D  R +
Sbjct: 563 QMLSLYGARKDFMMIEALF-ERLDS--DPNINKKELHLVVASI---YERKNRLNDASRIM 616

Query: 470 NRLPELGI 477
           NR+ + G+
Sbjct: 617 NRMSKGGV 624



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 119/285 (41%), Gaps = 34/285 (11%)

Query: 100 NSLVKLAADLDSCSATEDDVFSVLRCLG--DDFLEQDCVIILNNMTNPDTAALALTYFTN 157
           N ++ +   LD      D +F  +R +G   + +  + ++ +   T     A+ L     
Sbjct: 286 NVMIDVYGQLDMAKEA-DRLFWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQ 344

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K    + V+ YN  +KV+ K  + +KA  L  +M +RG++P+ +T+ST+IS        +
Sbjct: 345 KKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGKAGKLD 404

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAY-------------------------------G 246
           +A   F+++ S G + D + Y +MI AY                                
Sbjct: 405 RAAMLFQKLRSSGVEIDQVLYQTMIVAYERSGLVAHAKRLLHELKHPDSIPRETAIKILA 464

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           RAG +E A  ++ +A +     D + F  ++ L+         + V+E+M+  G  P+  
Sbjct: 465 RAGRIEEATWVFRQAFDAGEVKDISVFGCMVDLFSRNRKPANVIEVFEKMRGAGYFPDSN 524

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
               +L+  G+     +   +YKEM +         +  +L  YG
Sbjct: 525 VIALVLNAYGKLHEFEKADALYKEMQEEECVFPDEVHFQMLSLYG 569



 Score = 42.7 bits (99), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 80/209 (38%), Gaps = 43/209 (20%)

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV------ 427
           SV  YN +L         D A  +F++M++     PD +T+S++IT     G        
Sbjct: 106 SVFAYNVVLRNVLRAKQWDHAHGLFDEMRN-RALAPDRYTYSTLITHFGKAGMFDASLFW 164

Query: 428 -----------------------------SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
                                        S+A ++F  +  +G  P+L    S+I  +GK
Sbjct: 165 LQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINVFGK 224

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYV 516
           A+   +    +  + E+G+ PD      LL+V  +  K  E L    E  E         
Sbjct: 225 AKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLTT 284

Query: 517 VKLLLEEQDIEG--DFKKEATELFNSISK 543
             +++   D+ G  D  KEA  LF S+ K
Sbjct: 285 CNVMI---DVYGQLDMAKEADRLFWSMRK 310


>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
 gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
          Length = 973

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 163/344 (47%), Gaps = 2/344 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + ++V  + +  D+A R+   M + G KPD +T + LI         + A + F +M 
Sbjct: 268 YTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMK 327

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                PD +TY +++D +G  G+ +    +++  + + +  +  A++ +I      G   
Sbjct: 328 KSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVF 387

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L +++EMK  G+ P   +YN+L+    +A R      ++K M  +G  PN  T+   +
Sbjct: 388 EALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFI 447

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YG++      +  Y  MK KG+   V   N +L   A  G    A  +F ++K+    
Sbjct: 448 NYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM-GV 506

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD+ T++ MI  CS   K  EA  +F +M+E    P++  + SLI    KA R D+  R
Sbjct: 507 SPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWR 566

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 510
              +L E+ + P D     LL  + +  K +E+  L+E +  SN
Sbjct: 567 IFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSN 610



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 135/292 (46%), Gaps = 5/292 (1%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           M + G+  +  T++ L+     +    +A+E +  M   G  P   TYS ++ A+G+  +
Sbjct: 186 MKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRD 245

Query: 251 VEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           VE    L      E   + PN +S    I++ G A  FD    +  +M+  G KP++IT+
Sbjct: 246 VETVLWLLREM--EAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITH 303

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
             L+  +  A R    K ++ +M  +   P+  TY +LL  +G     +  + ++  MK 
Sbjct: 304 TVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKA 363

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G   +V  Y  ++     VG   EA E+F++MK  +   P+ ++++S+I+      +  
Sbjct: 364 DGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMK-QKGIVPEQYSYNSLISGFLKADRFG 422

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +A  +F  M   G +PN +     I  YGK+  +   ++    +   GI PD
Sbjct: 423 DALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPD 474



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 106/473 (22%), Positives = 201/473 (42%), Gaps = 53/473 (11%)

Query: 157 NKLKA---SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
           N +KA   +  V+ Y   +    +   + +A  +FD+M  +G+ P+  ++++LIS     
Sbjct: 359 NAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKA 418

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           +    A+E F+ M   G  P+  T+   I+ YG++G    A   Y+  +++   I P+  
Sbjct: 419 DRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKG--IVPDVV 476

Query: 274 STLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNMITY----------------------- 308
           +    L+G A  G       V+ E+KA+GV P+ ITY                       
Sbjct: 477 AGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDM 536

Query: 309 ------------NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
                       N+L+DT+ +A R  +   I+ ++ +  L P   TY +LL   GR    
Sbjct: 537 IENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKV 596

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           ++ + +  EM       ++  YNT+L      G  ++A ++   M +++ C PD  ++++
Sbjct: 597 KEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM-TTKGCIPDLSSYNT 655

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPEL 475
           +I       + +EA ++F +M +    P+   L +++  + K     + +  + +   + 
Sbjct: 656 VIYGLVKEERYNEAFSIFCQMKKV-LIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQP 714

Query: 476 GITPDDRFCGCLL-NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEA 534
           G   D   C  L+  ++ +   E+  +  E +  S   L       L +   +     EA
Sbjct: 715 GSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEA 774

Query: 535 TEL---FNSISKDVKKAYCNCLIDLCVNLNLLENACKLL----ELGLTLEVYT 580
            EL   F S    +K    N LI   V+ NL++ A  L     ELG   + +T
Sbjct: 775 HELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFT 827



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 125/271 (46%), Gaps = 8/271 (2%)

Query: 206 LISCARMNNLPNKAVEWFE---RMPSFGCDPDALTYS-SMIDAYGRAGNVEMAFGLYDRA 261
           +I   R  + P +A+E F    R P       +  Y   ++  +GR G++   F   D  
Sbjct: 95  VIHALRSADGPAEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVGDMAEVF---DVM 151

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
           + +  + +   F+ +    G  G           MK  G+  N  TYN L+  + ++   
Sbjct: 152 QRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFD 211

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
            +   +Y+ M  +G+ P+  TY+ L+ A+G+ R  E  L + REM+  G++ +V  Y   
Sbjct: 212 REALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTIC 271

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           + +       DEA+ I   M+ +E C+PD  T + +I +    G++S+A+ +F +M ++ 
Sbjct: 272 IRVLGQAKRFDEAYRILAKME-NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSD 330

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
            +P+     +L+  +G    +  V+   N +
Sbjct: 331 QKPDRVTYITLLDKFGDNGDSQSVMEIWNAM 361



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 97/236 (41%), Gaps = 36/236 (15%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A  L       GV      +++LI      NL + A   F  M   GC PD  TY+ ++
Sbjct: 773 EAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLL 832

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
           DA G++  +E                                     L V EEM   G +
Sbjct: 833 DAMGKSMRIEEM-----------------------------------LKVQEEMHRKGYE 857

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
              +TYN ++  + +++R  Q   +Y  +   G SP   TY  LL    +A   ED  ++
Sbjct: 858 STYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENL 917

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
           + EM E G + + T+YN LL      G T++   +F+DM   +   PD  +++ +I
Sbjct: 918 FNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDM-VDQGINPDIKSYTIII 972



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 1/187 (0%)

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
           ++ K+ GV      YN+L+  +         + ++ EM + G  P+  TY  LL A G++
Sbjct: 779 KKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKS 838

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
              E+ L V  EM  KG + +   YNT+++        ++A +++ ++ S +   P   T
Sbjct: 839 MRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMS-QGFSPTPCT 897

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           +  ++      G++ +AE +FNEMLE G + N  +   L+  +  A  T+ V      + 
Sbjct: 898 YGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMV 957

Query: 474 ELGITPD 480
           + GI PD
Sbjct: 958 DQGINPD 964



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/354 (18%), Positives = 149/354 (42%), Gaps = 38/354 (10%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           +  S + I Y + +K   K    D+A ++F DM++    PD +  ++LI         ++
Sbjct: 504 MGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDE 563

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A   F ++     +P   TY++++   GR G V+    L +   +  +  +   ++T++ 
Sbjct: 564 AWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILD 623

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
                G  +  L++   M   G  P++ +YN ++  + + +R  +  +I+ +M    L P
Sbjct: 624 CLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIP 682

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYRE---------------------MKEKGMQLSVTL 377
           ++ T  ++L ++ +    ++ L + ++                     +K+ G++ S+  
Sbjct: 683 DYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEF 742

Query: 378 YNTLLA---------MCADVGY------TDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
              + +         +C  + +        EA E+ +  KS       +  ++S+I    
Sbjct: 743 AEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSF-GVSLKTGLYNSLICGLV 801

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
               +  AE +F EM E G  P+ F    L+   GK+ R +++++    +   G
Sbjct: 802 DENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKG 855



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 75/146 (51%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ +    K   +++  ++ ++M  +G +   VT++T+IS    +    +A++ +  + 
Sbjct: 828 YNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLM 887

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S G  P   TY  ++D   +AG +E A  L++       + +   ++ L+  +  AGN +
Sbjct: 888 SQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTE 947

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLD 313
              +++++M   G+ P++ +Y  ++D
Sbjct: 948 KVCHLFQDMVDQGINPDIKSYTIIID 973


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1080

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 163/344 (47%), Gaps = 2/344 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + ++V  + +  D+A R+   M + G KPD +T + LI         + A + F +M 
Sbjct: 233 YTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMK 292

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                PD +TY +++D +G  G+ +    +++  + + +  +  A++ +I      G   
Sbjct: 293 KSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVF 352

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L +++EMK  G+ P   +YN+L+    +A R      ++K M  +G  PN  T+   +
Sbjct: 353 EALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFI 412

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YG++      +  Y  MK KG+   V   N +L   A  G    A  +F ++K+    
Sbjct: 413 NYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM-GV 471

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD+ T++ MI  CS   K  EA  +F +M+E    P++  + SLI    KA R D+  R
Sbjct: 472 SPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWR 531

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 510
              +L E+ + P D     LL  + +  K +E+  L+E +  SN
Sbjct: 532 IFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSN 575



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 147/300 (49%), Gaps = 1/300 (0%)

Query: 181  LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
            +D AE LF +M + G  PD  T++ L+     +    + ++  E M   G +   +TY++
Sbjct: 771  IDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNT 830

Query: 241  MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
            +I    ++  +E A  LY    ++ +   P  +  L+     AG  +   N++ EM   G
Sbjct: 831  IISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG 890

Query: 301  VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
             K N   YN LL+    A    +V  ++++M D G++P+  +Y  ++    +A    D L
Sbjct: 891  CKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGL 950

Query: 361  SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            + +R++ E G++  +  YN L+         +EA  +F +M+  +   P+ +T++S+I  
Sbjct: 951  TYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQ-KKGIVPNLYTYNSLILH 1009

Query: 421  CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
                GK +EA  M+ E+L  G++PN+F   +LI+ Y  +  TD    A  R+   G  P+
Sbjct: 1010 LGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1069



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 149/278 (53%), Gaps = 1/278 (0%)

Query: 168  YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
            YN+ +    K   +++  ++ ++M  +G +   VT++T+IS    +    +A++ +  + 
Sbjct: 793  YNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLM 852

Query: 228  SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
            S G  P   TY  ++D   +AG +E A  L++       + +   ++ L+  +  AGN +
Sbjct: 853  SQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTE 912

Query: 288  GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +++++M   G+ P++ +Y  ++DT+ +A +     T ++++ + GL P+  TY  L+
Sbjct: 913  KVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLI 972

Query: 348  RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               G+++  E+ +S++ EM++KG+  ++  YN+L+      G   EA +++E++  ++  
Sbjct: 973  DGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEEL-LTKGW 1031

Query: 408  QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            +P+ +T++++I   S  G    A A +  M+  G  PN
Sbjct: 1032 KPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1069



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 123/252 (48%), Gaps = 1/252 (0%)

Query: 166  ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
            + YN  +    K R L++A  L+ +++ +G  P   T+  L+           A   F  
Sbjct: 826  VTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNE 885

Query: 226  MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
            M  +GC  +   Y+ +++ +  AGN E    L+    ++    D  +++ +I     AG 
Sbjct: 886  MLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQ 945

Query: 286  FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
             +  L  + ++  +G++P++ITYN L+D +G++KR  +  +++ EM   G+ PN  TY S
Sbjct: 946  LNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNS 1005

Query: 346  LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
            L+   G+A    +   +Y E+  KG + +V  YN L+   +  G TD A+  +  M    
Sbjct: 1006 LILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVG- 1064

Query: 406  NCQPDSWTFSSM 417
             C P+S T+  +
Sbjct: 1065 GCLPNSSTYMQL 1076



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 142/324 (43%), Gaps = 39/324 (12%)

Query: 183  KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
            +A  L       GV      +++LI      NL + A   F  M   GC PD  TY+ ++
Sbjct: 738  EAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLL 797

Query: 243  DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            DA G++  +E                                     L V EEM   G +
Sbjct: 798  DAMGKSMRIEEM-----------------------------------LKVQEEMHRKGYE 822

Query: 303  PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
               +TYN ++  + +++R  Q   +Y  +   G SP   TY  LL    +A   ED  ++
Sbjct: 823  STYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENL 882

Query: 363  YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TIC 421
            + EM E G + + T+YN LL      G T++   +F+DM   +   PD  +++ +I T+C
Sbjct: 883  FNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDM-VDQGINPDIKSYTIIIDTLC 941

Query: 422  SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD- 480
               G++++    F ++LE G EP+L     LI   GK++R ++ V   N + + GI P+ 
Sbjct: 942  KA-GQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNL 1000

Query: 481  DRFCGCLLNVMTQTPKEELGKLVE 504
              +   +L++       E GK+ E
Sbjct: 1001 YTYNSLILHLGKAGKAAEAGKMYE 1024



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 135/292 (46%), Gaps = 5/292 (1%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           M + G+  +  T++ L+     +    +A+E +  M   G  P   TYS ++ A+G+  +
Sbjct: 151 MKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRD 210

Query: 251 VEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           VE    L      E   + PN +S    I++ G A  FD    +  +M+  G KP++IT+
Sbjct: 211 VETVLWLLREM--EAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITH 268

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
             L+  +  A R    K ++ +M  +   P+  TY +LL  +G     +  + ++  MK 
Sbjct: 269 TVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKA 328

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G   +V  Y  ++     VG   EA E+F++MK  +   P+ ++++S+I+      +  
Sbjct: 329 DGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMK-QKGIVPEQYSYNSLISGFLKADRFG 387

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +A  +F  M   G +PN +     I  YGK+  +   ++    +   GI PD
Sbjct: 388 DALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPD 439



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 101/455 (22%), Positives = 194/455 (42%), Gaps = 49/455 (10%)

Query: 157 NKLKA---SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
           N +KA   +  V+ Y   +    +   + +A  +FD+M  +G+ P+  ++++LIS     
Sbjct: 324 NAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKA 383

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           +    A+E F+ M   G  P+  T+   I+ YG++G    A   Y+  +++   I P+  
Sbjct: 384 DRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKG--IVPDVV 441

Query: 274 STLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNMITY----------------------- 308
           +    L+G A  G       V+ E+KA+GV P+ ITY                       
Sbjct: 442 AGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDM 501

Query: 309 ------------NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
                       N+L+DT+ +A R  +   I+ ++ +  L P   TY +LL   GR    
Sbjct: 502 IENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKV 561

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           ++ + +  EM       ++  YNT+L      G  ++A ++   M +++ C PD  ++++
Sbjct: 562 KEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM-TTKGCIPDLSSYNT 620

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPEL 475
           +I       + +EA ++F +M +    P+   L +++  + K     + +  + +   + 
Sbjct: 621 VIYGLVKEERYNEAFSIFCQMKKV-LIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQP 679

Query: 476 GITPDDRFCGCLL-NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEA 534
           G   D   C  L+  ++ +   E+  +  E +  S   L       L +   +     EA
Sbjct: 680 GSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEA 739

Query: 535 TEL---FNSISKDVKKAYCNCLIDLCVNLNLLENA 566
            EL   F S    +K    N LI   V+ NL++ A
Sbjct: 740 HELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIA 774



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 125/271 (46%), Gaps = 8/271 (2%)

Query: 206 LISCARMNNLPNKAVEWFE---RMPSFGCDPDALTYS-SMIDAYGRAGNVEMAFGLYDRA 261
           +I   R  + P +A+E F    R P       +  Y   ++  +GR G++   F   D  
Sbjct: 60  VIHALRSADGPAEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVGDMAEVF---DVM 116

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
           + +  + +   F+ +    G  G           MK  G+  N  TYN L+  + ++   
Sbjct: 117 QRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFD 176

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
            +   +Y+ M  +G+ P+  TY+ L+ A+G+ R  E  L + REM+  G++ +V  Y   
Sbjct: 177 REALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTIC 236

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           + +       DEA+ I   M+ +E C+PD  T + +I +    G++S+A+ +F +M ++ 
Sbjct: 237 IRVLGQAKRFDEAYRILAKME-NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSD 295

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
            +P+     +L+  +G    +  V+   N +
Sbjct: 296 QKPDRVTYITLLDKFGDNGDSQSVMEIWNAM 326



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/354 (18%), Positives = 149/354 (42%), Gaps = 38/354 (10%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           +  S + I Y + +K   K    D+A ++F DM++    PD +  ++LI         ++
Sbjct: 469 MGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDE 528

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A   F ++     +P   TY++++   GR G V+    L +   +  +  +   ++T++ 
Sbjct: 529 AWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILD 588

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
                G  +  L++   M   G  P++ +YN ++  + + +R  +  +I+ +M    L P
Sbjct: 589 CLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIP 647

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYRE---------------------MKEKGMQLSVTL 377
           ++ T  ++L ++ +    ++ L + ++                     +K+ G++ S+  
Sbjct: 648 DYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEF 707

Query: 378 YNTLLA---------MCADVGY------TDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
              + +         +C  + +        EA E+ +  KS       +  ++S+I    
Sbjct: 708 AEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSF-GVSLKTGLYNSLICGLV 766

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
               +  AE +F EM E G  P+ F    L+   GK+ R +++++    +   G
Sbjct: 767 DENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKG 820


>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
          Length = 879

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 159/317 (50%), Gaps = 3/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           +I Y   + ++ K   + KA  +  +M   G+K +N T+S LI+    +++  N A   F
Sbjct: 417 IISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFAN-AFAIF 475

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  PD   Y+ +I+A+ + GN++ A  + ++ + E+ +    AF  +I+ Y  A
Sbjct: 476 EEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVA 535

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+    L+  + M+  G  P ++TYN L+  + R  +  +  ++  +M+  G++PN +TY
Sbjct: 536 GDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTY 595

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++R Y  +         + ++KE G++L V +Y TLL  C   G    A  +  +M S
Sbjct: 596 TIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM-S 654

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +    +++ ++ +I   + RG V EAE +  +M E G  PN+   TS I    KA    
Sbjct: 655 FQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQ 714

Query: 464 DVVRALNRLPELGITPD 480
              + +  + ++G+ P+
Sbjct: 715 RAEKVIEEMVDVGLKPN 731



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 157/374 (41%), Gaps = 38/374 (10%)

Query: 143 TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVT 202
           + PD     ++ F    K S+    + + +  + K  D   A   F++M  RG++P+   
Sbjct: 222 SRPDNWQAVVSAFERIPKPSRRE--FGLMIVYYAKRGDKHHARATFENMRARGIEPNAFV 279

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           F++L+    +      A+   E M S G +   +TYS +I  + +  + + A  L+  A+
Sbjct: 280 FTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAK 339

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNF------------DG---------------------- 288
            +   ++   +S +I  +  +GN             DG                      
Sbjct: 340 TKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNEN 399

Query: 289 -CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
            CL V+E +K  G KP++I+Y  LL+   +  +  +  +I KEM   G+  N  TY+ L+
Sbjct: 400 KCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLI 459

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             +       +  +++ EM   G+Q    +YN L+     +G  D A  I E M+  E  
Sbjct: 460 NGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQ-KERM 518

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           QP +  F  +I   +  G +  A    + M  +G  P +    +LI    +  +    V 
Sbjct: 519 QPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVS 578

Query: 468 ALNRLPELGITPDD 481
            L+++   GITP++
Sbjct: 579 VLDKMSIAGITPNE 592



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 117/251 (46%), Gaps = 1/251 (0%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D+  A    D M   G  P  +T++ LI      +   +AV   ++M   G  P+  TY+
Sbjct: 537 DMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYT 596

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            ++  Y  +G++  AF  + + +    ++D   + TL++    +G     L V  EM   
Sbjct: 597 IIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQ 656

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
            +  N   YN L+D   R    W+ + + K+M ++G+ PN +TY S + A  +A   +  
Sbjct: 657 KIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRA 716

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
             V  EM + G++ +V  Y TL+   A V   D A + FE+MK +   +PD  ++  ++T
Sbjct: 717 EKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLA-GLKPDEASYHCLVT 775

Query: 420 ICSCRGKVSEA 430
               R  V E 
Sbjct: 776 SLLSRATVMEG 786



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 133/291 (45%), Gaps = 1/291 (0%)

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
            +R  KP    F  +I         + A   FE M + G +P+A  ++S++ AY  A ++
Sbjct: 234 FERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDM 293

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
             A    +  ++E   +    +S LI  +    +     N+++E K      N I Y+N+
Sbjct: 294 RGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNI 353

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +    ++    + + + +EM ++G+    + Y S++  Y   +     L V+  +KE G 
Sbjct: 354 IHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGF 413

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
           + S+  Y  LL +   +G   +A  I ++M+S    + ++ T+S +I         + A 
Sbjct: 414 KPSIISYGCLLNLYVKIGKVAKALSISKEMESC-GIKHNNKTYSMLINGFIHLHDFANAF 472

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           A+F EML +G +P+  +   LI+ + K    D  +  L ++ +  + P +R
Sbjct: 473 AIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNR 523



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 137/316 (43%), Gaps = 1/316 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ Y++ +  F K  D   A+ LF +   +    + + +S +I     +    +A E   
Sbjct: 312 IVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVR 371

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G D     Y SM+  Y    N      +++R +   ++    ++  L+ LY   G
Sbjct: 372 EMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIG 431

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                L++ +EM++ G+K N  TY+ L++             I++EM  +GL P+   Y 
Sbjct: 432 KVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYN 491

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L+ A+ +    +  + +  +M+++ MQ S   +  ++   A  G    A +  + M+ S
Sbjct: 492 LLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRS 551

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
             C P   T++++I     + KV  A ++ ++M  AG  PN    T +++ Y  +     
Sbjct: 552 -GCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGK 610

Query: 465 VVRALNRLPELGITPD 480
                 ++ E G+  D
Sbjct: 611 AFEYFTKIKESGLKLD 626



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 103/218 (47%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +    +   + +A  + D M   G+ P+  T++ ++     +    KA E+F 
Sbjct: 557 VMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFT 616

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           ++   G   D   Y +++ A  ++G ++ A  +      +K   +   ++ LI  +   G
Sbjct: 617 KIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRG 676

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           +     ++ ++MK  GV PN+ TY + ++   +A    + + + +EM D GL PN  TY 
Sbjct: 677 DVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYT 736

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +L++ + R    +  L  + EMK  G++     Y+ L+
Sbjct: 737 TLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLV 774



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 89/202 (44%), Gaps = 43/202 (21%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           +ALA+T   +  K  +   +YN+ +  + +  D+ +AE L   M + GV P+  T+++ I
Sbjct: 645 SALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYI 704

Query: 208 -SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
            +C +  ++  +A +  E M   G  P+  TY+++I  + R         L DRA     
Sbjct: 705 NACCKAGDM-QRAEKVIEEMVDVGLKPNVKTYTTLIKGWARV-------SLPDRA----- 751

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD------TMGRAKR 320
                                  L  +EEMK  G+KP+  +Y+ L+       T+     
Sbjct: 752 -----------------------LKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGST 788

Query: 321 PWQVKTIYKEMTDNGLSPNWNT 342
              + ++ +EM++N L+ +  T
Sbjct: 789 YTGIISVCREMSENDLTVDLRT 810


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 173/380 (45%), Gaps = 40/380 (10%)

Query: 136 VIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           VI L+ M   D A     Y   +L+    +   N  +    K R    A  LFD+ML RG
Sbjct: 126 VIALSQMGLLDEA----LYVFRRLRTLPALPACNAVLDGLVKARRPGCAWELFDEMLRRG 181

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           + P  VT++TLI+  R      KA E +++M +   DP+ +TY++MI A    G +  A 
Sbjct: 182 LVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEGCIGDAE 241

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L+D  +    + +   ++ L+  +    + +  + +Y+E+   G+ PN + +  L+D  
Sbjct: 242 RLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGF 301

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM--------- 366
            +AKR  + K ++ EM   G++P    Y SL+    R+   ++ L++Y+EM         
Sbjct: 302 CKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDE 361

Query: 367 --------------------------KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
                                     +E G+ L+   YN L+     +G  +EA      
Sbjct: 362 FTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTR 421

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M +    +P+  ++SS+I   S RGK+  A A++ EM+  G EPN+   T+LI  + K  
Sbjct: 422 M-TEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNG 480

Query: 461 RTDDVVRALNRLPELGITPD 480
             D   R    + E GI+P+
Sbjct: 481 GIDAAFRLHKEMIENGISPN 500



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 146/341 (42%), Gaps = 53/341 (15%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YNV M    +  D++ A  L+ ++L  G+ P+ V F+TLI         ++A   F  MP
Sbjct: 259 YNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMP 318

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLY----------------------------- 258
            FG  P    Y+S++D   R+GN + A  LY                             
Sbjct: 319 RFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMH 378

Query: 259 --DR----ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
             DR     + +   ++  A++ LI  Y   GN +  L     M  +G++PN+++Y++L+
Sbjct: 379 VADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLI 438

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           D   +  +      IY EM   G+ PN  TY +L+  + +    +    +++EM E G+ 
Sbjct: 439 DGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGIS 498

Query: 373 LSVTLYNTLL-AMCAD------VGYTDE--------AFEIFEDMKSSENCQ-PDSWTFSS 416
            +    + L+  +C +      V +  E           +F +    E C  P+S  + +
Sbjct: 499 PNAITVSVLVDGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYMT 558

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI--QC 455
           +I      G+  EA  +F+ M ++G  P+ F  T LI  QC
Sbjct: 559 LIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIRGQC 599



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 97/203 (47%), Gaps = 4/203 (1%)

Query: 288 GCL-NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           GC   +++EM   G+ P+++TYN L++         + + ++ +M    + PN  TY ++
Sbjct: 168 GCAWELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTM 227

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + A        D   ++  MKE GMQ +   YN L++        + A  +++++  S  
Sbjct: 228 ICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKS-G 286

Query: 407 CQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             P++  F+++I   C  + + SEA+ MF EM   G  P + V  SL+    ++    + 
Sbjct: 287 LNPNAVIFTTLIDGFCKAK-RFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEA 345

Query: 466 VRALNRLPELGITPDDRFCGCLL 488
           +     +  LG+ PD+  C  ++
Sbjct: 346 LALYQEMTRLGLCPDEFTCSIVV 368



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/224 (19%), Positives = 98/224 (43%), Gaps = 21/224 (9%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +  + +  +L++A      M + G++P+ V++S+LI           A+  +  M 
Sbjct: 399 YNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMV 458

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT----- 282
           + G +P+ +TY+++I  + + G ++ AF L+         I PNA +  + + G      
Sbjct: 459 AKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENG--ISPNAITVSVLVDGLCRENR 516

Query: 283 -------AGNFDG--CLNVYEEMKAIGVK-----PNMITYNNLLDTMGRAKRPWQVKTIY 328
                     + G  C +++       ++     PN + Y  L+  +    +  +   ++
Sbjct: 517 VQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLF 576

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
             M  +G+ P+  TY  L+R      Y  + + +Y +M + G++
Sbjct: 577 SYMRKSGMIPDSFTYTLLIRGQCMLGYVLNAMMLYADMMKIGVK 620



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 19/173 (10%)

Query: 150 LALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           +A+  +T  +    E  V+ Y   +    K   +D A RL  +M++ G+ P+ +T S L+
Sbjct: 449 IAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLV 508

Query: 208 SCARMNNLPNKAVEWFERMPSFGCD-----------------PDALTYSSMIDAYGRAGN 250
                 N   +AV +        C                  P+++ Y ++I      G 
Sbjct: 509 DGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQ 568

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
              A  L+   R      D   ++ LI+     G     + +Y +M  IGVKP
Sbjct: 569 HCEAGKLFSYMRKSGMIPDSFTYTLLIRGQCMLGYVLNAMMLYADMMKIGVKP 621


>gi|302769928|ref|XP_002968383.1| hypothetical protein SELMODRAFT_169661 [Selaginella moellendorffii]
 gi|300164027|gb|EFJ30637.1| hypothetical protein SELMODRAFT_169661 [Selaginella moellendorffii]
          Length = 532

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 186/413 (45%), Gaps = 39/413 (9%)

Query: 95  YDTRYNSLVKLAADLDSCS--ATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALAL 152
           Y  RY     L   +D C     E+ V   +RCL  + L + C  ++ N+  P     A 
Sbjct: 105 YLGRYG----LQLVIDECGRLLQENRVEECIRCL--ERLAK-CGFVVKNLVKPTLCMEAC 157

Query: 153 TYFTNKLKASKEVILY-------NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
               N   A +   L        N+ M+ FR   DL    ++F  +   GV PD  ++  
Sbjct: 158 ARMHNTALALRYACLLPDILHSCNMIMQKFRDQGDLQSVFQVFQALESTGVLPDMYSYCI 217

Query: 206 LI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
           LI +C R  +   KA   FE +   G   +    +SM++A+  AGN++    LY + +  
Sbjct: 218 LIDACGRCGD-TEKATAIFEGLLKAGTVLNVYVCNSMMNAH--AGNIQHVLRLYRQMQGS 274

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
               D   ++ + K    + N    L +YEE+KA  +K N+++Y  L+   G AK   +V
Sbjct: 275 GIAADVTTYNIVFKACRLSKNPVLALRLYEELKAKEIKLNVLSYGTLIQIFGEAKMLDRV 334

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
             + ++M   G+ PN  T+ SL+ A  +    E TL VY++M + G   +   YN LL+ 
Sbjct: 335 FQMKRDMDSTGIVPNVVTWTSLVGACSKGALVEKTLQVYQDMVQAGCTPNAFTYNFLLSA 394

Query: 385 CADVGYTDEAFEIFEDMKS-----------------SENCQPDSWTFSSMITICSCRGKV 427
           C D G +D+A ++F + K+                 SE  +PDS  +++M+  C    K 
Sbjct: 395 CVDGGQSDKAHKLFREWKTSGRILAGIEVQDESVIFSEWVRPDSVAYNTMMRACDKLPK- 453

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +AEA+  EM+ +G  P+      LI  YG        V+A  R+ + GI  D
Sbjct: 454 -QAEAVMQEMVSSGLRPDKRSWCILINSYGCNGDKQGAVQAFQRMGKSGIIAD 505



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 114/246 (46%), Gaps = 34/246 (13%)

Query: 144 NPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDN 200
           NP    LAL  +  +LKA +    V+ Y   +++F + + LD+  ++  DM   G+ P+ 
Sbjct: 295 NP---VLALRLY-EELKAKEIKLNVLSYGTLIQIFGEAKMLDRVFQMKRDMDSTGIVPNV 350

Query: 201 VTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR 260
           VT+++L+       L  K ++ ++ M   GC P+A TY+ ++ A    G  + A  L+  
Sbjct: 351 VTWTSLVGACSKGALVEKTLQVYQDMVQAGCTPNAFTYNFLLSACVDGGQSDKAHKLF-- 408

Query: 261 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG--VKPNMITYNNLLDTMGRA 318
               +W+              T+G     + V +E       V+P+ + YN    TM RA
Sbjct: 409 ---REWK--------------TSGRILAGIEVQDESVIFSEWVRPDSVAYN----TMMRA 447

Query: 319 --KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
             K P Q + + +EM  +GL P+  ++  L+ +YG     +  +  ++ M + G+   V 
Sbjct: 448 CDKLPKQAEAVMQEMVSSGLRPDKRSWCILINSYGCNGDKQGAVQAFQRMGKSGIIADVV 507

Query: 377 LYNTLL 382
            Y  ++
Sbjct: 508 AYTAII 513



 Score = 42.7 bits (99), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V+PD+V ++T++     + LP +A    + M S G  PD  ++  +I++YG  G+ + A 
Sbjct: 434 VRPDSVAYNTMMRAC--DKLPKQAEAVMQEMVSSGLRPDKRSWCILINSYGCNGDKQGAV 491

Query: 256 GLYDRARNEKWRIDPNAFSTLIKL 279
             + R        D  A++ +IK+
Sbjct: 492 QAFQRMGKSGIIADVVAYTAIIKV 515


>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
 gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
          Length = 425

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 149/325 (45%), Gaps = 3/325 (0%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           ++ ++       LA+      +K   E   +L NV +    K   +D+A +LF  M   G
Sbjct: 55  VIQSLVKAGNVVLAMELLDKMIKTGLEPDTLLCNVVLDGLGKANMMDEACKLFASMKSMG 114

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
              D+ T++ LI          +A   F+ M   GC P A  Y+++ID Y +AG +E A 
Sbjct: 115 CPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAM 174

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            +  +  ++    D    ++LI      G  +    ++E MK  GV  N +++N +LD  
Sbjct: 175 VVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCC 234

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           G+A +         EM   G+ PN  T+ +L+   GRA+Y  +   V +EM+  G+   V
Sbjct: 235 GKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDV 294

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y  ++   A  G   +AFE+F DM+ +  C  +  T++ +I      G+  +A  ++ 
Sbjct: 295 FTYTCMIEAFAKAGNMGKAFEMFGDMEKA-GCSANVVTYNLLIDALVKAGRYQDARDIYF 353

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQ 460
           +M + G  P+    T L Q  GK +
Sbjct: 354 DMKKKGILPDAITATVLQQLAGKCK 378



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 178/384 (46%), Gaps = 14/384 (3%)

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           +K ++ F+ +   G  P+A TY  +I +  +AGNV +A  L D+        D    + +
Sbjct: 31  HKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMELLDKMIKTGLEPDTLLCNVV 90

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           +   G A   D    ++  MK++G   +  TY  L+ ++GR KR  +   ++ EM + G 
Sbjct: 91  LDGLGKANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGC 150

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
           +P+   Y +++  Y +A   E  + V ++M +K +       N+L+   +  G T+ A E
Sbjct: 151 TPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACE 210

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           IFE MK S     ++ +F++M+  C   GKV  A    +EM   G +PN     +LI C 
Sbjct: 211 IFERMKKS-GVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCL 269

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC---VEKSNSKL 513
           G+A+   +  + L  +   G+TPD     C++    +     +GK  E    +EK+    
Sbjct: 270 GRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAG--NMGKAFEMFGDMEKAGCSA 327

Query: 514 GYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELG 573
             V   LL +  ++    ++A +++  +    KK      I   V L  L   CKL   G
Sbjct: 328 NVVTYNLLIDALVKAGRYQDARDIYFDMK---KKGILPDAITATV-LQQLAGKCKL--SG 381

Query: 574 LTLEVYTDIQSRSPTQWSLHLKSL 597
           ++L+   + Q  SP+   L  KSL
Sbjct: 382 ISLD--ENEQRPSPSSPVLEKKSL 403



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 147/313 (46%), Gaps = 1/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   ++   K  ++  A  L D M+  G++PD +  + ++      N+ ++A + F  M 
Sbjct: 52  YKCVIQSLVKAGNVVLAMELLDKMIKTGLEPDTLLCNVVLDGLGKANMMDEACKLFASMK 111

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S GC  D  TY+ +I + GR    E A  L+D            A++ +I +Y  AG  +
Sbjct: 112 SMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIE 171

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + V ++M    + P+  T N+L+  + R  R      I++ M  +G++ N  ++ ++L
Sbjct: 172 SAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAML 231

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
              G+A           EM+ +G++ +   +NTL+       Y  EA+++ ++M+S+   
Sbjct: 232 DCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSA-GL 290

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD +T++ MI   +  G + +A  MF +M +AG   N+     LI    KA R  D   
Sbjct: 291 TPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARD 350

Query: 468 ALNRLPELGITPD 480
               + + GI PD
Sbjct: 351 IYFDMKKKGILPD 363


>gi|357144696|ref|XP_003573383.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Brachypodium distachyon]
          Length = 606

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 158/320 (49%), Gaps = 7/320 (2%)

Query: 174 VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDP 233
            + K  D  +AER+   M  +G +P  ++ + L+          KA   F RM + G +P
Sbjct: 150 AYGKLGDFSRAERVLKYMNKKGYRPTVISQTALMEAYGRAKQYRKAEAVFHRMQTSGPEP 209

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEK---WRIDPNAFSTLIKLYGTAGNFDGCL 290
             +TY  ++ +       + A  +++   +EK   ++ D   F  +I +Y  +G++    
Sbjct: 210 SPITYQIILKSLVEGDKYKEAEAIFEDLLSEKRTFFKPDQKMFHMMIYMYKKSGDYAQAR 269

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            ++ +M   G+  + +T+N+L+   G  K   +V +IY +M   GL P+  +Y+ L++AY
Sbjct: 270 KLFAQMSERGIPQSTVTFNSLMSFEGDYK---EVSSIYDQMQRAGLKPDVVSYSLLIKAY 326

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
           G+AR  E+  +V+ EM + G++ +   YN LL   A  G  +EA  +F+ M+     +PD
Sbjct: 327 GKARREEEASAVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQTVFKTMRR-HRVEPD 385

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
             ++++M+        +  AE  F  + E G  PN+ V  +L++ Y K    + V+R   
Sbjct: 386 LCSYTTMLLAYVNASDMDGAEKFFRRIKEDGLRPNVVVYGTLMKGYSKLDNVEKVMRVYE 445

Query: 471 RLPELGITPDDRFCGCLLNV 490
           R+   G+ P+      +++V
Sbjct: 446 RMRMQGVEPNQTIFTTIMDV 465



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 135/283 (47%), Gaps = 7/283 (2%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRG---VKPDNVTFSTLISCARMNNLPNKAVEW 222
           I Y + +K   +     +AE +F+D+L       KPD   F  +I   + +    +A + 
Sbjct: 212 ITYQIILKSLVEGDKYKEAEAIFEDLLSEKRTFFKPDQKMFHMMIYMYKKSGDYAQARKL 271

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F +M   G     +T++S++   G    V     +YD+ +    + D  ++S LIK YG 
Sbjct: 272 FAQMSERGIPQSTVTFNSLMSFEGDYKEVS---SIYDQMQRAGLKPDVVSYSLLIKAYGK 328

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           A   +    V+EEM   G++P   +YN LLD    +    + +T++K M  + + P+  +
Sbjct: 329 ARREEEASAVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQTVFKTMRRHRVEPDLCS 388

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y ++L AY  A   +     +R +KE G++ +V +Y TL+   + +   ++   ++E M+
Sbjct: 389 YTTMLLAYVNASDMDGAEKFFRRIKEDGLRPNVVVYGTLMKGYSKLDNVEKVMRVYERMR 448

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
             +  +P+   F++++ +         A   FNEM   G+ P+
Sbjct: 449 -MQGVEPNQTIFTTIMDVHGRNSDFGNAVIWFNEMETRGYPPD 490



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 91/176 (51%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y++ +K + K R  ++A  +F++MLD G++P   +++ L+    ++ L  +A   F
Sbjct: 315 DVVSYSLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQTVF 374

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M     +PD  +Y++M+ AY  A +++ A   + R + +  R +   + TL+K Y   
Sbjct: 375 KTMRRHRVEPDLCSYTTMLLAYVNASDMDGAEKFFRRIKEDGLRPNVVVYGTLMKGYSKL 434

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
            N +  + VYE M+  GV+PN   +  ++D  GR          + EM   G  P+
Sbjct: 435 DNVEKVMRVYERMRMQGVEPNQTIFTTIMDVHGRNSDFGNAVIWFNEMETRGYPPD 490



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 101/218 (46%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D  +   ++D M   G+KPD V++S LI          +A   FE M   G  P   +Y+
Sbjct: 296 DYKEVSSIYDQMQRAGLKPDVVSYSLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSYN 355

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            ++DA+  +G VE A  ++   R  +   D  +++T++  Y  A + DG    +  +K  
Sbjct: 356 ILLDAFAISGLVEEAQTVFKTMRRHRVEPDLCSYTTMLLAYVNASDMDGAEKFFRRIKED 415

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G++PN++ Y  L+    +     +V  +Y+ M   G+ PN   + +++  +GR     + 
Sbjct: 416 GLRPNVVVYGTLMKGYSKLDNVEKVMRVYERMRMQGVEPNQTIFTTIMDVHGRNSDFGNA 475

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           +  + EM+ +G        N LL++        EA E+
Sbjct: 476 VIWFNEMETRGYPPDKKAKNILLSLAKTPEEQQEANEL 513



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 159/366 (43%), Gaps = 38/366 (10%)

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           W      F  L+  YG  G+F     V + M   G +P +I+   L++  GRAK+  + +
Sbjct: 137 WDFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYRPTVISQTALMEAYGRAKQYRKAE 196

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM---KEKGMQLSVTLYNTLL 382
            ++  M  +G  P+  TY  +L++       ++  +++ ++   K    +    +++ ++
Sbjct: 197 AVFHRMQTSGPEPSPITYQIILKSLVEGDKYKEAEAIFEDLLSEKRTFFKPDQKMFHMMI 256

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDS-WTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
            M    G   +A ++F  M  SE   P S  TF+S++   S  G   E  +++++M  AG
Sbjct: 257 YMYKKSGDYAQARKLFAQM--SERGIPQSTVTFNSLM---SFEGDYKEVSSIYDQMQRAG 311

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP-KEELG 500
            +P++   + LI+ YGKA+R ++       + + GI P  +    LL+    +   EE  
Sbjct: 312 LKPDVVSYSLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQ 371

Query: 501 KLVECVEKSNSK---LGYVVKLL--LEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID 555
            + + + +   +     Y   LL  +   D++G     A + F  I +D          +
Sbjct: 372 TVFKTMRRHRVEPDLCSYTTMLLAYVNASDMDG-----AEKFFRRIKED------GLRPN 420

Query: 556 LCVNLNLLENACKLLELGLTLEVY--TDIQSRSPTQ------WSLHLKSLSLGAALTALH 607
           + V   L++   KL  +   + VY    +Q   P Q        +H ++   G A+    
Sbjct: 421 VVVYGTLMKGYSKLDNVEKVMRVYERMRMQGVEPNQTIFTTIMDVHGRNSDFGNAV---- 476

Query: 608 IWINDL 613
           IW N++
Sbjct: 477 IWFNEM 482



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 59/116 (50%), Gaps = 2/116 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERM 226
           Y   +  +    D+D AE+ F  + + G++P+ V + TL+   ++++N+  K +  +ERM
Sbjct: 389 YTTMLLAYVNASDMDGAEKFFRRIKEDGLRPNVVVYGTLMKGYSKLDNV-EKVMRVYERM 447

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
              G +P+   +++++D +GR  +   A   ++      +  D  A + L+ L  T
Sbjct: 448 RMQGVEPNQTIFTTIMDVHGRNSDFGNAVIWFNEMETRGYPPDKKAKNILLSLAKT 503


>gi|255661160|gb|ACU25749.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 426

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVF 137

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 195

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM + G+ PN  
Sbjct: 196 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSI 255

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+ +   LY T++      G    A  +  ++
Sbjct: 256 TYSTIISIWGKVGKLDKAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL 315

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+      I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++
Sbjct: 316 K-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKK 370

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  P+      +LN
Sbjct: 371 YGNVVEVFDKMRGLGYFPESNVIALVLN 398



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 150/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+ +A  +F ++  +G + +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDKAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 137/288 (47%), Gaps = 1/288 (0%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +  
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                 K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDKAAMLFQKLRSSGVDID 288



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   +KA   F+++ S G D D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDKAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P  N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMRGLGYFPESNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 151/307 (49%), Gaps = 4/307 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +    K   L++A +LF  MLD G+ P  VT++ +I    +    ++A+E F+ M 
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMR 247

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S GC P   T++ +IDA+ + G ++ AF L  R  ++    D   +STLI    +    D
Sbjct: 248 SKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVD 307

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              ++ E+M     KP ++T N L+  + +A R  + + +   M  +G SP+  TY +L+
Sbjct: 308 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             + RA   E    +  +M  +G+  +V  Y  L++         EA  +F  MKSS  C
Sbjct: 368 HGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSS-GC 426

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+ +T++++I      G+V     +F EM+ AG  P+  V  +L     K+ R+    R
Sbjct: 427 APNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRS---AR 483

Query: 468 ALNRLPE 474
           AL  L E
Sbjct: 484 ALEILRE 490



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 145/299 (48%), Gaps = 5/299 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +    K   L+ A  LF  +L  GV P  V +++LI    M N  + A E F  M 
Sbjct: 13  YGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMN 72

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P  +TY+ +IDA  + G +E A  L  +   +    D   ++T++     +G  +
Sbjct: 73  RRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVE 132

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L ++ EM+ +G  PN  ++N ++  + +  +  Q   ++ EM    + P+  +Y  L+
Sbjct: 133 EALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILI 192

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT-DEAFEIFEDMKSSE 405
               +A    +   ++R M + G+  S   YN ++  MC  + YT DEA E+F+ M+ S+
Sbjct: 193 DGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMC--LAYTLDEALELFKSMR-SK 249

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            C+P  +TF+ +I     RGK+ EA  +   M + G  P++   ++LI       R DD
Sbjct: 250 GCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDD 308



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 149/302 (49%), Gaps = 5/302 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
            D A  LF DM  RG  P  VT++ +I  +    +  +A +  ++M   G  PD +TY++
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           ++D   ++G VE A  L++    E+    PN  + +T+I         D    V+ EM+A
Sbjct: 121 VMDGLCKSGRVEEALLLFNEM--ERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEA 178

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
             + P+  +Y  L+D + +A +  +   +++ M D+G++P+  TY  ++     A   ++
Sbjct: 179 RDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDE 238

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            L +++ M+ KG + S   +N L+      G  DEAF + + M + +   PD  T+S++I
Sbjct: 239 ALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRM-TDDGHVPDVVTYSTLI 297

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
           +      +V +A  +  +M++   +P +    +LI    KA R  +    L+ +   G +
Sbjct: 298 SGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQS 357

Query: 479 PD 480
           PD
Sbjct: 358 PD 359



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 142/315 (45%), Gaps = 13/315 (4%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS----CARMNNLPNKAVEWF 223
           +N+ +    K   +D+A RL   M D G  PD VT+STLIS     AR+++    A    
Sbjct: 258 FNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDD----ARHLL 313

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M    C P  +T +++I    +AG ++ A  + D   +     D   ++TL+  +  A
Sbjct: 314 EDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRA 373

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +    +  +M A G+ PN++TY  L+  + +A R  +   ++ +M  +G +PN  TY
Sbjct: 374 GQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTY 433

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+  +  A   +  L ++ EM   G+     +Y TL A     G +  A EI  + + 
Sbjct: 434 TALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGR- 492

Query: 404 SENCQPDSW---TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
            E+ + ++W    +   +      GK+  A     +M+  G  P      SL+    K+ 
Sbjct: 493 -ESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSG 551

Query: 461 RTDDVVRALNRLPEL 475
           +  +    L  + +L
Sbjct: 552 QGGEARAVLEEIMDL 566



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 121/293 (41%), Gaps = 9/293 (3%)

Query: 117 DDVFSVLRCLGDDFLEQDCVII------LNNMTNPDTAALALTYFTNKLKASKEVILYNV 170
           D+ F +L+ + DD    D V        L ++   D A   L     K +    V+  N 
Sbjct: 272 DEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMV-KRQCKPTVVTQNT 330

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
            +    K   + +A  + D M+  G  PD VT++TL+          +A E    M + G
Sbjct: 331 LIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARG 390

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
             P+ +TY++++    +A  +  A G++ + ++     +   ++ LI  + +AG  DG L
Sbjct: 391 LAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGL 450

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            ++ EM   G+ P+ + Y  L   + ++ R  +   I +E  ++  S  W          
Sbjct: 451 KLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVD 510

Query: 351 GRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           G    G  E  L   R+M   G   +     +L+A     G   EA  + E++
Sbjct: 511 GLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 563


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 184/370 (49%), Gaps = 5/370 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I++N        +LAL      +K   E  ++  +  +  +   + +  A  L D M++ 
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G +PD +TF+TLI    ++N  ++AV   +RM   GC P+ +TY  +++   + G++++A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
           F L ++    K   +   +ST+I       + D  LN++ EM+  GV+PN+ITY++L+  
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 304

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +   +R      +  +M +  ++PN  T+ +L+ A+ +     +   +Y EM ++ +   
Sbjct: 305 LCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 364

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAM 433
           +  Y++L+         DEA  +FE M  S++C P+  T++++I   C  + ++ E   +
Sbjct: 365 IFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLINGFCKAK-RIDEGVEL 422

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           F EM + G   N    T+LI  + +A+  D+      ++   G+ P+      LL+ + +
Sbjct: 423 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCK 482

Query: 494 TPKEELGKLV 503
             K E   +V
Sbjct: 483 NGKLEKAMVV 492



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 168/348 (48%), Gaps = 42/348 (12%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           +++N +       LA     NK++A+K    V++Y+  +    K R  D A  LF +M +
Sbjct: 230 VVVNGLCKRGDIDLAFN-LLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMEN 288

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           +GV+P+ +T+S+LISC       + A      M     +P+ +T++++IDA+ + G +  
Sbjct: 289 KGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVE 348

Query: 254 AFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           A  LYD     K  IDP+ F  S+LI  +      D   +++E M +    PN++TYN L
Sbjct: 349 AEKLYDEMI--KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 406

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           ++   +AKR  +   +++EM+  GL  N  TY +L+  + +AR  ++   V+++M   G+
Sbjct: 407 INGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGV 466

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-------------------------- 405
             ++  YNTLL      G  ++A  +FE ++ S+                          
Sbjct: 467 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 526

Query: 406 --------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
                     +PD   +++MI+    +G   EA+A+F +M E G  P+
Sbjct: 527 LFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPD 574



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 134/254 (52%), Gaps = 1/254 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K +  V+ +N  +  F K   L +AE+L+D+M+ R + PD  T+S+LI+   M++  ++A
Sbjct: 325 KINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 384

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              FE M S  C P+ +TY+++I+ + +A  ++    L+          +   ++TLI  
Sbjct: 385 KHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHG 444

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +  A + D    V+++M + GV PN++TYN LLD + +  +  +   +++ +  + + P 
Sbjct: 445 FFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 504

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY  ++    +A   ED   ++  +  KG++  V +YNT+++     G  +EA  +F 
Sbjct: 505 IYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFR 564

Query: 400 DMKSSENCQPDSWT 413
            M+  +   PDS T
Sbjct: 565 KMR-EDGPLPDSGT 577



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 148/348 (42%), Gaps = 47/348 (13%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           LD A  LF  M+     P    F+ L+S  A+M    +  +   E+M   G   +  TY+
Sbjct: 66  LDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKF-DLVISLGEKMQRLGISHNLYTYN 124

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +I+ + R   + +A  L  +     +       S+L+  Y         + + ++M  +
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT----------------- 342
           G +P+ IT+  L+  +    +  +   +   M   G  PN  T                 
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244

Query: 343 ------------------YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
                             Y++++ +  + R+ +D L+++ EM+ KG++ +V  Y++L++ 
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 304

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
             +     +A  +  DM   +   P+  TF+++I      GK+ EAE +++EM++   +P
Sbjct: 305 LCNYERWSDASRLLSDMIERK-INPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDP 363

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           ++F  +SLI  +    R D+       + EL I+ D     C  NV+T
Sbjct: 364 DIFTYSSLINGFCMHDRLDEA----KHMFELMISKD-----CFPNVVT 402


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 155/338 (45%), Gaps = 2/338 (0%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A   L +  +K     +V+ Y+  +    K + +D+AE +   M+D+GVKPD VT++T
Sbjct: 216 DRAEGVLQHMIDK-GVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNT 274

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           +I         ++A    + M   G  PD +TY+++ID   +A  V+ A G+     ++ 
Sbjct: 275 IIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKD 334

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
            + D   ++ LI  Y + G +   +   EEM A G+ P+++TY+ LLD + +  +  + +
Sbjct: 335 VKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEAR 394

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            I+  M   G+ PN   Y  LL  Y       D   +   M   G+  +  ++N +L   
Sbjct: 395 KIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAY 454

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
           A     DEA  IF  M S     PD  T+  +I      G+V +A   FN+M+  G  PN
Sbjct: 455 AKKAMIDEAMHIFSRM-SQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPN 513

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
             V  SL+       R +        + + G+ P+  F
Sbjct: 514 SVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVF 551



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 156/349 (44%), Gaps = 41/349 (11%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +    K + +D+AE +   M+D+GVK D VT+ST+I         ++A    +
Sbjct: 199 VVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQ 258

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  PD +TY+++ID   +A  V+ A G                            
Sbjct: 259 HMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEG---------------------------- 290

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  V + M   GVKP+++TYN ++D + +A+   +   + + M D  + P+  TY 
Sbjct: 291 -------VLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYN 343

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L+  Y      ++ +    EM  +G+   V  Y+ LL      G   EA +IF  M   
Sbjct: 344 CLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCM-IR 402

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +  +P+   +  ++   + RG +++   + + M+  G  PN ++   ++  Y K    D+
Sbjct: 403 KGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDE 462

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL 513
            +   +R+ + G++PD    G L++ + +     LG++ + V K N  +
Sbjct: 463 AMHIFSRMSQHGLSPDVVTYGILIDALCK-----LGRVDDAVLKFNQMI 506



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 152/319 (47%), Gaps = 1/319 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V+ Y + +    K   +D A   F+ M++ GV P++V F++L+      +   KA E
Sbjct: 476 SPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEE 535

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F  M   G  P+ + +++++      G V +A  L D       R +  +++TLI  + 
Sbjct: 536 LFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHC 595

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AG  D    + + M ++G+KP++I+Y+ LL    +  R      +++EM   G++P   
Sbjct: 596 LAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAV 655

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY+++L+     R   +   +Y  M + G Q  +  YN +L         DEAF+IF+ +
Sbjct: 656 TYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSL 715

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             S++ +P+  TF+ MI +    G+  +A  +F  +   G  PN+     +++   +   
Sbjct: 716 -CSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGL 774

Query: 462 TDDVVRALNRLPELGITPD 480
            D+       + + G TPD
Sbjct: 775 LDEFDNLFLAMEKSGCTPD 793



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 155/344 (45%), Gaps = 2/344 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           ++N+ +  + K   +D+A  +F  M   G+ PD VT+  LI         + AV  F +M
Sbjct: 446 IFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQM 505

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            + G  P+++ ++S++         E A  L+    ++  R +   F+T++      G  
Sbjct: 506 INDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQV 565

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                + + M+ +GV+PN+I+YN L+     A R  +   +   M   GL P+  +Y +L
Sbjct: 566 MVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTL 625

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           LR Y +    ++   ++REM  KG+      Y+T+L          EA E++ +M  S  
Sbjct: 626 LRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQ 685

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            Q D +T++ ++        V EA  +F  +      PN+   T +I    K  R  D +
Sbjct: 686 -QWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAM 744

Query: 467 RALNRLPELGITPD-DRFCGCLLNVMTQTPKEELGKLVECVEKS 509
                +P  G+ P+   +C  + N++ +   +E   L   +EKS
Sbjct: 745 DLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKS 788



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 148/321 (46%), Gaps = 15/321 (4%)

Query: 181 LDKAERLFDDMLDRGVKPDNV-TFSTLISC---ARMNNLPNKAVEWFERMP---SFGCDP 233
           +D A +LFD++L    +P +V  F+ L++    AR ++    AV  F RM    S    P
Sbjct: 30  IDDALKLFDELLPHA-RPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKVRP 88

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV- 292
           D  TYS +   + R G +E  F  +       WR++    + L+     A   D  +++ 
Sbjct: 89  DLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDIL 148

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG---LSPNWNTYASLLRA 349
              M   G  PN+++ N LL  +   KR  +   +   M ++G    +PN  TY +++  
Sbjct: 149 LRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDG 208

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
             +A+  +    V + M +KG++L V  Y+T++         D A  + + M   +  +P
Sbjct: 209 LCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHM-IDKGVKP 267

Query: 410 DSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           D  T++++I  +C  +  V  AE +   M++ G +P++    ++I    KAQ  D     
Sbjct: 268 DVVTYNTIIDGLCKAQA-VDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGV 326

Query: 469 LNRLPELGITPDDRFCGCLLN 489
           L  + +  + PD +   CL++
Sbjct: 327 LQHMIDKDVKPDIQTYNCLIH 347



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 91/186 (48%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I Y+  ++ + K   +D A  LF +ML +GV P  VT+ST++         ++A E +
Sbjct: 618 DLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELY 677

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G   D  TY+ +++   +   V+ AF ++    ++  R +   F+ +I +    
Sbjct: 678 LNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKG 737

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     ++++  + + G+ PN++TY  ++  + +     +   ++  M  +G +P+    
Sbjct: 738 GRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVML 797

Query: 344 ASLLRA 349
            +++R+
Sbjct: 798 NAIIRS 803



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 88/209 (42%), Gaps = 10/209 (4%)

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK---RPWQVKTIYKEMT---DN 334
           G+ G  D  L +++E+       ++  +N+LL+ + RA+         +++  M     N
Sbjct: 26  GSLG-IDDALKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSN 84

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
            + P+  TY+ L   + R    E   + +  + + G +++  + N LL    D    DEA
Sbjct: 85  KVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEA 144

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG---FEPNLFVLTS 451
            +I         C P+  + ++++       +V EA  + + M E G     PN+    +
Sbjct: 145 MDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNT 204

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +I    KAQ  D     L  + + G+  D
Sbjct: 205 IIDGLCKAQAVDRAEGVLQHMIDKGVKLD 233


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 123/244 (50%), Gaps = 1/244 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
            YNV +  F KC  LD A   FD M   GV+PD VT++TLI C   +   NKA E FE M
Sbjct: 433 FYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAM 492

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              GC P   TY+ MI+++G     E    L  + +++    +   ++TL+ +YG +G F
Sbjct: 493 QESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRF 552

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              +   E MK++G+KP+   YN L++   +     Q    ++ M  +GL P+     SL
Sbjct: 553 KDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSL 612

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + A+G  R   +  SV + MKE  ++  V  Y TL+     V   D+   ++E+M  S  
Sbjct: 613 INAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLS-G 671

Query: 407 CQPD 410
           C PD
Sbjct: 672 CTPD 675



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 153/315 (48%), Gaps = 1/315 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +  +      + A  +  +M   GV+P++  FS +++  R      K+ +    M 
Sbjct: 364 YSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMR 423

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  PD   Y+ MID +G+   ++ A   +DR R E  + D   ++TLI  +  +G+ +
Sbjct: 424 NSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHN 483

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++E M+  G  P   TYN ++++ G  +R   VKT+  +M   GL  N  TY +L+
Sbjct: 484 KAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLV 543

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YG++   +D +     MK  G++ S T+YN L+   A  G +++A   F  M+ ++  
Sbjct: 544 DIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMR-ADGL 602

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P     +S+I       + +EA ++   M E   +P++   T+L++   + ++ D V  
Sbjct: 603 KPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPA 662

Query: 468 ALNRLPELGITPDDR 482
               +   G TPD +
Sbjct: 663 VYEEMTLSGCTPDRK 677



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 196/422 (46%), Gaps = 18/422 (4%)

Query: 86  RASKLKEKSYDTRYNSLVKLA--ADLDSCSATED-----DVFSVLRCLG--DDFLEQDCV 136
           R+ KL E    ++  +L  L   A + +C+  +D     ++ S +R  G   DF+    +
Sbjct: 166 RSEKLYEAFLLSQRQTLTPLTYNALIGACARNDDLEKALNLMSRMRRDGFPSDFVNYSFI 225

Query: 137 IILNNMTN-PDTAALALTYF---TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDML 192
           I     TN  D++ L   Y    ++K++   +++  N  +  F K  D+++A      + 
Sbjct: 226 IQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLL--NDIIVGFAKSGDVNRAMSFLAMVQ 283

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
             G+ P   T   +I+         +A   FE +   G  P    Y++++  Y + G+++
Sbjct: 284 GNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLK 343

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  +        +  D + +S LI  Y  AG ++    V +EM+A GV+PN   ++ +L
Sbjct: 344 DAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRIL 403

Query: 313 DTMGRAKRPWQVK-TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
            +  R +  WQ    + +EM ++G+SP+ + Y  ++  +G+    +  L+ +  M+ +G+
Sbjct: 404 ASY-RDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGV 462

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
           Q     +NTL+      G+ ++A E+FE M+ S  C P + T++ MI     + +  + +
Sbjct: 463 QPDAVTWNTLIDCHCKSGHHNKAEELFEAMQES-GCSPCTTTYNIMINSFGEQERWEDVK 521

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            +  +M   G   N+   T+L+  YG++ R  D +  L  +  +G+ P       L+N  
Sbjct: 522 TLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAY 581

Query: 492 TQ 493
            Q
Sbjct: 582 AQ 583



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 136/292 (46%), Gaps = 5/292 (1%)

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           N+A+ +   +   G  P   T  ++I A G AG  E A  +++  +         A++ L
Sbjct: 273 NRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNAL 332

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           +K Y   G+     ++  EM+  G  P+  TY+ L+D    A R    + + KEM  +G+
Sbjct: 333 LKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGV 392

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            PN   ++ +L +Y      + +  V REM+  G+      YN ++         D A  
Sbjct: 393 RPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALA 452

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            F+ M+  E  QPD+ T++++I  C C+ G  ++AE +F  M E+G  P       +I  
Sbjct: 453 TFDRMR-MEGVQPDAVTWNTLID-CHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINS 510

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
           +G+ +R +DV   L ++   G+  +      L+++  Q+ +      +EC+E
Sbjct: 511 FGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGR--FKDAIECLE 560



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 60/140 (42%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y   + ++ +      A    + M   G+KP +  ++ LI+      L  +A+  F 
Sbjct: 536 VVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFR 595

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M + G  P  L  +S+I+A+G       AF +    +    + D   ++TL+K      
Sbjct: 596 VMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVE 655

Query: 285 NFDGCLNVYEEMKAIGVKPN 304
            FD    VYEEM   G  P+
Sbjct: 656 KFDKVPAVYEEMTLSGCTPD 675


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 210/441 (47%), Gaps = 7/441 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I++N        +LAL      +K   E  ++  +  +  +   + +  A  L D M++ 
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G +PD +TF+TLI    ++N  ++AV   +RM   GC P+ +TY  +++   + G+ ++A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             L ++    K   D   F+T+I       + D  LN+++EM+  G++PN++TY++L+  
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 304

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +    R      +  +M +  ++PN  T+ +L+ A+ +     +   +Y +M ++ +   
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPD 364

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           +  YN+L+         D+A ++FE M  S++C PD  T++++I       +V +   +F
Sbjct: 365 IFTYNSLVNGFCMHDRLDKAKQMFEFM-VSKDCFPDVVTYNTLIKGFCKSKRVEDGTELF 423

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
            EM   G   +    T+LIQ        D+  +   ++   G+ PD      LL+ +   
Sbjct: 424 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 483

Query: 495 PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYC-- 550
            K E+  ++ + ++KS  KL   +   + E   +     +  +LF S+S K VK      
Sbjct: 484 GKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTY 543

Query: 551 NCLIDLCVNLNLLENACKLLE 571
           N +I    +  LL+ A  LL+
Sbjct: 544 NTMISGLCSKRLLQEAYALLK 564



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 173/349 (49%), Gaps = 9/349 (2%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           +++N +       LAL    NK++A+K   +V+++N  +    K R +D A  LF +M  
Sbjct: 230 VVVNGLCKRGDTDLALNLL-NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           +G++P+ VT+S+LISC       + A +    M     +P+ +T++++IDA+ + G    
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348

Query: 254 AFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           A  LYD     K  IDP+ F+  +L+  +      D    ++E M +    P+++TYN L
Sbjct: 349 AEKLYDDMI--KRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +    ++KR      +++EM+  GL  +  TY +L++        ++   V+++M   G+
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
              +  Y+ LL    + G  ++A E+F+ M+ SE  + D + +++MI      GKV +  
Sbjct: 467 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE-IKLDIYIYTTMIEGMCKAGKVDDGW 525

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +F  +   G +PN+    ++I      +   +    L ++ E G  P+
Sbjct: 526 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPN 574



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 143/283 (50%), Gaps = 1/283 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K +  ++ +N  +  F K     +AE+L+DDM+ R + PD  T+++L++   M++  +KA
Sbjct: 325 KINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKA 384

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
            + FE M S  C PD +TY+++I  + ++  VE    L+    +     D   ++TLI+ 
Sbjct: 385 KQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 444

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
               G+ D    V+++M + GV P+++TY+ LLD +    +  +   ++  M  + +  +
Sbjct: 445 LFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 504

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
              Y +++    +A   +D   ++  +  KG++ +V  YNT+++         EA+ + +
Sbjct: 505 IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLK 564

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            MK  +   P+S T++++I      G  + +  +  EM    F
Sbjct: 565 KMK-EDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRF 606



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 135/301 (44%), Gaps = 3/301 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           LD A  LF  M+     P  V F+ L+S  A+M    +  +   E+M          TY+
Sbjct: 66  LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKF-DVVISLGEKMQRLEIVHGLYTYN 124

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +I+ + R   + +A  L  +     +       S+L+  Y         + + ++M  +
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G +P+ IT+  L+  +    +  +   +   M   G  PN  TY  ++    +    +  
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           L++  +M+   ++  V ++NT++       + D+A  +F++M+ ++  +P+  T+SS+I+
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME-TKGIRPNVVTYSSLIS 303

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                G+ S+A  + ++M+E    PNL    +LI  + K  +  +  +  + + +  I P
Sbjct: 304 CLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDP 363

Query: 480 D 480
           D
Sbjct: 364 D 364



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 2/116 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR--DLDKAERLFDDMLDR 194
           I+L+ + N      AL  F    K+  ++ +Y  T  +   C+   +D    LF  +  +
Sbjct: 475 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 534

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           GVKP+ VT++T+IS      L  +A    ++M   G  P++ TY+++I A+ R G+
Sbjct: 535 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 590


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 172/350 (49%), Gaps = 3/350 (0%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K  A+  +  YN+ + +  +   LD A  L D M   G+ P+  T + ++     +   +
Sbjct: 370 KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLD 429

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +A   FE M    C PD +T+ S+ID  G+ G V+ A+ +Y++  +   R +   +++LI
Sbjct: 430 EACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLI 489

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           K +   G  +    +Y++M      P++   N  +D M +A  P + + +++E+      
Sbjct: 490 KNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFV 549

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P+  +Y+ L+    +A +  +T  ++  MKE+G  L    YN ++      G  ++A+++
Sbjct: 550 PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQL 609

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            E+MK ++  +P   T+ S+I   +   ++ EA  +F E      E N+ + +SLI  +G
Sbjct: 610 LEEMK-TKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFG 668

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
           K  R D+    L  L + G+TP+      LL+ + +   EE+ + + C +
Sbjct: 669 KVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKA--EEINEALVCFQ 716



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 178/398 (44%), Gaps = 22/398 (5%)

Query: 89  KLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVL-RCLGDDFLEQDCVIILNNMTNPDT 147
           +LK+ +    Y    +   +L  C  + + +  V+ RC   D L+Q    IL  M+    
Sbjct: 74  RLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQ----ILGEMS---- 125

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
               +  F   +    E++L  V     R+  D+ +  R F        +P    ++TLI
Sbjct: 126 ----VAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFK------FRPAFSAYTTLI 175

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                 N  +  +  F++M   G +P    ++++I  + + G V+ A  L D  ++    
Sbjct: 176 GAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLD 235

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   ++  I  +G  G  D     + E++A G+KP+ +TY +++  + +A R  +   +
Sbjct: 236 ADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEM 295

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           ++ +  N   P    Y +++  YG A   ++  S+    + KG   SV  YN +L     
Sbjct: 296 FEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRK 355

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           +G  DEA ++FE+MK  ++  P+  T++ +I +    GK+  A  + + M +AG  PN+ 
Sbjct: 356 MGKVDEALKVFEEMK--KDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVR 413

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFC 484
            +  ++    K+Q+ D+       +     TPD+  FC
Sbjct: 414 TVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFC 451



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 159/357 (44%), Gaps = 1/357 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S ++ L N  M    K  + +K   +F+++  R   PD  ++S LI         N+  E
Sbjct: 514 SPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYE 573

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F  M   GC  D   Y+ +ID + + G V  A+ L +  + + +      + ++I    
Sbjct: 574 LFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLA 633

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                D    ++EE K+  ++ N++ Y++L+D  G+  R  +   I +E+   GL+PN  
Sbjct: 634 KIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLY 693

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+ SLL A  +A    + L  ++ MKE     +   Y  L+     V   ++AF  +++M
Sbjct: 694 TWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEM 753

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           +  +  +P + ++++MI+  +  G ++EA A+F+     G  P+     ++I+      R
Sbjct: 754 Q-KQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNR 812

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVK 518
             D           G+   ++ C  LL+ + +    E   +V  V +   K  +  +
Sbjct: 813 AMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRETGKARHAAR 869



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 145/316 (45%), Gaps = 3/316 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y   +K F      +   +++ DM+++   PD    +T + C      P K    FE 
Sbjct: 483 IVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEE 542

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           + +    PDA +YS +I    +AG     + L+   + +   +D  A++ +I  +   G 
Sbjct: 543 IKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGK 602

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    + EEMK  G +P ++TY +++D + +  R  +   +++E     +  N   Y+S
Sbjct: 603 VNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSS 662

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  +G+    ++   +  E+ +KG+  ++  +N+LL         +EA   F+ MK  +
Sbjct: 663 LIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELK 722

Query: 406 NCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            C P+  T+  +I  +C  R K ++A   + EM + G +P+    T++I    KA    +
Sbjct: 723 -CTPNQVTYGILINGLCKVR-KFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAE 780

Query: 465 VVRALNRLPELGITPD 480
                +R    G  PD
Sbjct: 781 AGALFDRFKANGGVPD 796



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 4/128 (3%)

Query: 138 ILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           +L+ +   +    AL  F +  +LK +   + Y + +    K R  +KA   + +M  +G
Sbjct: 698 LLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQG 757

Query: 196 VKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           +KP  ++++T+IS  A+  N+  +A   F+R  + G  PD+  Y++MI+          A
Sbjct: 758 MKPSTISYTTMISGLAKAGNIA-EAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDA 816

Query: 255 FGLYDRAR 262
           F L++  R
Sbjct: 817 FSLFEETR 824


>gi|410110107|gb|AFV61133.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           brasiliensis]
          Length = 382

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 39  DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVF 98

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 99  SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 156

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 157 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSI 216

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 217 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 276

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 277 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKK 331

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 332 YXNVVEVFDKMRGLGYFPDSNVIAVVLN 359



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  + ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 164 AIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 223

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 224 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 279

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 280 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYXNVVEVF 339

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+ +  +    VY EM+E G
Sbjct: 340 DKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQEVG 381



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 130/278 (46%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 114 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 173

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SMI  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 174 KNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 231

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 232 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 290

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 291 LAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYXNVVEVFDKMRGL-G 346

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   +    + +  GK+ E   A  ++ EM E G
Sbjct: 347 YFPDSNVIA---VVLNAYGKLQEFDKANDVYMEMQEVG 381


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 210/441 (47%), Gaps = 7/441 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I++N        +LAL      +K   E  ++  +  +  +   + +  A  L D M++ 
Sbjct: 87  ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 146

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G +PD +TF+TLI    ++N  ++AV   +RM   GC P+ +TY  +++   + G+ ++A
Sbjct: 147 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 206

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             L ++    K   D   F+T+I       + D  LN+++EM+  G++PN++TY++L+  
Sbjct: 207 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 266

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +    R      +  +M +  ++PN  T+ +L+ A+ +     +   +Y +M ++ +   
Sbjct: 267 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPD 326

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           +  YN+L+         D+A ++FE M  S++C PD  T++++I       +V +   +F
Sbjct: 327 IFTYNSLVNGFCMHDRLDKAKQMFEFM-VSKDCFPDVVTYNTLIKGFCKSKRVEDGTELF 385

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
            EM   G   +    T+LIQ        D+  +   ++   G+ PD      LL+ +   
Sbjct: 386 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 445

Query: 495 PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYC-- 550
            K E+  ++ + ++KS  KL   +   + E   +     +  +LF S+S K VK      
Sbjct: 446 GKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTY 505

Query: 551 NCLIDLCVNLNLLENACKLLE 571
           N +I    +  LL+ A  LL+
Sbjct: 506 NTMISGLCSKRLLQEAYALLK 526



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 173/349 (49%), Gaps = 9/349 (2%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           +++N +       LAL    NK++A+K   +V+++N  +    K R +D A  LF +M  
Sbjct: 192 VVVNGLCKRGDTDLALNLL-NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 250

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           +G++P+ VT+S+LISC       + A +    M     +P+ +T++++IDA+ + G    
Sbjct: 251 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 310

Query: 254 AFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           A  LYD     K  IDP+ F+  +L+  +      D    ++E M +    P+++TYN L
Sbjct: 311 AEKLYDDMI--KRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 368

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +    ++KR      +++EM+  GL  +  TY +L++        ++   V+++M   G+
Sbjct: 369 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 428

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
              +  Y+ LL    + G  ++A E+F+ M+ SE  + D + +++MI      GKV +  
Sbjct: 429 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE-IKLDIYIYTTMIEGMCKAGKVDDGW 487

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +F  +   G +PN+    ++I      +   +    L ++ E G  P+
Sbjct: 488 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPN 536



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 143/283 (50%), Gaps = 1/283 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K +  ++ +N  +  F K     +AE+L+DDM+ R + PD  T+++L++   M++  +KA
Sbjct: 287 KINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKA 346

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
            + FE M S  C PD +TY+++I  + ++  VE    L+    +     D   ++TLI+ 
Sbjct: 347 KQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 406

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
               G+ D    V+++M + GV P+++TY+ LLD +    +  +   ++  M  + +  +
Sbjct: 407 LFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 466

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
              Y +++    +A   +D   ++  +  KG++ +V  YNT+++         EA+ + +
Sbjct: 467 IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLK 526

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            MK  +   P+S T++++I      G  + +  +  EM    F
Sbjct: 527 KMK-EDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRF 568



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 135/301 (44%), Gaps = 3/301 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           LD A  LF  M+     P  V F+ L+S  A+M    +  +   E+M          TY+
Sbjct: 28  LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKF-DVVISLGEKMQRLEIVHGLYTYN 86

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +I+ + R   + +A  L  +     +       S+L+  Y         + + ++M  +
Sbjct: 87  ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 146

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G +P+ IT+  L+  +    +  +   +   M   G  PN  TY  ++    +    +  
Sbjct: 147 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 206

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           L++  +M+   ++  V ++NT++       + D+A  +F++M+ ++  +P+  T+SS+I+
Sbjct: 207 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME-TKGIRPNVVTYSSLIS 265

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                G+ S+A  + ++M+E    PNL    +LI  + K  +  +  +  + + +  I P
Sbjct: 266 CLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDP 325

Query: 480 D 480
           D
Sbjct: 326 D 326



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 2/116 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR--DLDKAERLFDDMLDR 194
           I+L+ + N      AL  F    K+  ++ +Y  T  +   C+   +D    LF  +  +
Sbjct: 437 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 496

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           GVKP+ VT++T+IS      L  +A    ++M   G  P++ TY+++I A+ R G+
Sbjct: 497 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 552


>gi|449018641|dbj|BAM82043.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
           10D]
          Length = 805

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 186/406 (45%), Gaps = 25/406 (6%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y++ +    KC    +A  +F  M+  GV P+  TFS L          ++A+  F
Sbjct: 396 DVASYSILISCLGKCGASAQAIEMFHKMIRNGVAPNAFTFSALFGALTDGAFFDQAMRLF 455

Query: 224 ERM-PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR-ARNEKWRIDPNAFSTLIKLYG 281
           + +  S+  + + + Y++++   GRAG ++ A  L  +  +N   + D   + T++ +  
Sbjct: 456 QMIRASYPNELNVVVYNAVLKYVGRAGRIDAALDLLGQMEQNRNVQPDIVTYGTILDICA 515

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
              +      V + M+  G++PN   Y +L+D   RA  P Q +++++++   GL  +  
Sbjct: 516 KKQDVSLAYAVLDRMRKRGMRPNNFCYASLIDACARAGLPDQAESLFRQLRAEGLEYDLF 575

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
              +LL A+ RA+  E     + EM+  G++     +NTL+   A     D+A++ FE M
Sbjct: 576 ICNALLGAFARAKMVERAFQAFEEMRSAGVRGDRITFNTLITAAARAREFDKAWKAFETM 635

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K S N   D+ T++++I  CS  G    A A+FNEM +A  +P +F   +LI    K Q 
Sbjct: 636 KKS-NISADATTYNALIDACSKSGMTELAFALFNEMRQAHLQPTIFTFNALIGACTKLQD 694

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLL 521
                + L  +   G+ PD       LN++          L  C    N    Y + L+ 
Sbjct: 695 MRRATQVLMLMHGFGVYPDT----FTLNIL----------LTACAR--NEDFDYAISLVR 738

Query: 522 EEQDIEGDFKKEATELFNSISKDVKKAYCNCLI-DLCVNLNLLENA 566
           E    E +++     L +SI  ++    C+    D C  L LLE A
Sbjct: 739 E---FETNYRVRLDRLGSSIVTNLCIKACDSQSRDRC--LRLLEAA 779



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 7/205 (3%)

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           ++ ++ +Y+ L+  +G+     Q   ++ +M  NG++PN  T+++L  A     + +  +
Sbjct: 393 IEIDVASYSILISCLGKCGASAQAIEMFHKMIRNGVAPNAFTFSALFGALTDGAFFDQAM 452

Query: 361 SVYREMKEK-GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
            +++ ++     +L+V +YN +L      G  D A ++   M+ + N QPD  T+ +++ 
Sbjct: 453 RLFQMIRASYPNELNVVVYNAVLKYVGRAGRIDAALDLLGQMEQNRNVQPDIVTYGTILD 512

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           IC+ +  VS A A+ + M + G  PN F   SLI    +A   D       +L   G+  
Sbjct: 513 ICAKKQDVSLAYAVLDRMRKRGMRPNNFCYASLIDACARAGLPDQAESLFRQLRAEGLEY 572

Query: 480 DDRFCGCLLNVMTQTPKEELGKLVE 504
           D   C  LL    +       K+VE
Sbjct: 573 DLFICNALLGAFAR------AKMVE 591


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 159/340 (46%), Gaps = 8/340 (2%)

Query: 156 TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV-KPDNVTFSTLISCARMNN 214
            ++   S E   YN  M +F     +  A  LF+  +  GV  PD  +F+ +I       
Sbjct: 189 ASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVG 248

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA-- 272
              KA+E  ERM  FGC PD +T++ +++   RA  V     +  R + +   + PN   
Sbjct: 249 DVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCM-PNVVT 307

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           ++++I  Y  AG  +  + VY +M A+G  PN++TYN L++  G+A        +Y++M 
Sbjct: 308 YTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMI 367

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
                P+  T++SL+  Y R    +D + ++ EM +  +Q +   +  ++        + 
Sbjct: 368 LRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSG 427

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           EA    + M    +  P ++ ++ +I +    GKV EA  +  EM E G  P+ +  T L
Sbjct: 428 EALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTIL 487

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPD----DRFCGCLL 488
           I  +    R  + V   +++ E G +PD    + F  CLL
Sbjct: 488 IIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFISCLL 527



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 153/311 (49%), Gaps = 6/311 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V  +NV +K   K  D+ KA  L + M + G  PD VT + L++        +K  E
Sbjct: 231 SPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGRE 290

Query: 222 WFERMPSFG-CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
              R+   G C P+ +TY+S+I  Y +AG +E A  +Y+         +   ++ LI  Y
Sbjct: 291 VLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGY 350

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           G AGN    + VY++M      P+++T+++L+D   R  +      I+ EM    + PN 
Sbjct: 351 GKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNA 410

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
           +T+  ++  + +     + L   ++M  +  +     +YN ++ +    G  DEA  I  
Sbjct: 411 HTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILI 470

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY--- 456
           +M+  + C+PD +T++ +I     +G+++EA   F++M+E G  P+  V+ S I C    
Sbjct: 471 EMEE-KGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFISCLLKS 529

Query: 457 GKAQRTDDVVR 467
           G     D ++R
Sbjct: 530 GMPGEVDHIMR 540



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 115/259 (44%), Gaps = 10/259 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           V+ Y   +  + K   ++ A  +++DM+  G  P+ VT++ LI+   +  N+   AV  +
Sbjct: 305 VVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNM-GSAVAVY 363

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYG 281
           ++M    C PD +T+SS+ID Y R G ++ A  ++      ++ I PNA  F  +I  + 
Sbjct: 364 QQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEM--AQYHIQPNAHTFCIIIHTFC 421

Query: 282 TAGNFDGCLNVYEEMKA-IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
                   L+  ++M     + P    YN ++D + +  +  +   I  EM + G  P+ 
Sbjct: 422 KQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDK 481

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY  L+  +       + ++ + +M E G      + N+ ++     G   E   I   
Sbjct: 482 YTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFISCLLKSGMPGEVDHI--- 538

Query: 401 MKSSENCQPDSWTFSSMIT 419
           M+ +      SW   S +T
Sbjct: 539 MRIAAGGASSSWKDPSPVT 557



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 81/179 (45%), Gaps = 4/179 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ ++  +  + +C  LD A +++ +M    ++P+  TF  +I      N   +A+ + 
Sbjct: 374 DVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFL 433

Query: 224 ERMPSFGCD--PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
           ++M +   D  P A  Y+ +ID   + G V+ A  +      +  R D   ++ LI  + 
Sbjct: 434 KKM-NMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHC 492

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
             G     +  + +M   G  P+ I  N+ +  + ++  P +V  I + +   G S +W
Sbjct: 493 MKGRIAEAVTFFHKMVETGCSPDSIVVNSFISCLLKSGMPGEVDHIMR-IAAGGASSSW 550



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 7/149 (4%)

Query: 137 IILNNMTNPDTAALALTYFTN---KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           II++     + +  AL +      +   + +  +YN  + V  K   +D+A  +  +M +
Sbjct: 415 IIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEE 474

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY---GRAGN 250
           +G +PD  T++ LI    M     +AV +F +M   GC PD++  +S I      G  G 
Sbjct: 475 KGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFISCLLKSGMPGE 534

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           V+    +     +  W+ DP+  +  I +
Sbjct: 535 VDHIMRIAAGGASSSWK-DPSPVTQSIDI 562



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 53/289 (18%), Positives = 118/289 (40%), Gaps = 13/289 (4%)

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGE 357
           + + P+  +Y  ++  M ++ R      ++ +MTD +G  PN    + L  +   A   +
Sbjct: 121 LAMPPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLLD 180

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
              ++  +  + G  +    YN L+ +    G   +A  +FE         PD W+F+ +
Sbjct: 181 AAAALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVV 240

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I      G V +A  +   M E G  P+      L+    +A+        L RL   G+
Sbjct: 241 IKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGV 300

Query: 478 TPDDRFCGCLLNVMTQTPKE----ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE 533
                   C+ NV+T T       + G++ + +   N  +       +   ++  +   +
Sbjct: 301 --------CMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGK 352

Query: 534 ATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 582
           A  + ++++   +     CL D+    +L++  C+  +L   ++++T++
Sbjct: 353 AGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEM 401


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 164/347 (47%), Gaps = 2/347 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  Y + ++V  + +  D+A R+   M + G KPD +T + LI         + A + F 
Sbjct: 355 VYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFW 414

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M      PD +TY +++D +G  G+ +    +++  + + +  +  A++ +I      G
Sbjct: 415 KMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVG 474

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                L +++EMK  G+ P   +YN+L+    +A R      ++K M  +G  PN  T+ 
Sbjct: 475 RVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHV 534

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
             +  YG++      +  Y  MK KG+   V   N +L   A  G    A  +F ++K+ 
Sbjct: 535 LFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM 594

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               PD+ T++ MI  CS   K  EA  +F +M+E    P++  + SLI    KA R D+
Sbjct: 595 -GVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDE 653

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 510
             R   +L E+ + P D     LL  + +  K +E+  L+E +  SN
Sbjct: 654 AWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSN 700



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 147/300 (49%), Gaps = 1/300 (0%)

Query: 181  LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
            +D AE LF +M + G  PD  T++ L+     +    + ++  E M   G +   +TY++
Sbjct: 896  IDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNT 955

Query: 241  MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
            +I    ++  +E A  LY    ++ +   P  +  L+     AG  +   N++ EM   G
Sbjct: 956  IISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG 1015

Query: 301  VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
             K N   YN LL+    A    +V  ++++M D G++P+  +Y  ++    +A    D L
Sbjct: 1016 CKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGL 1075

Query: 361  SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            + +R++ E G++  +  YN L+         +EA  +F +M+  +   P+ +T++S+I  
Sbjct: 1076 TYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQ-KKGIVPNLYTYNSLILH 1134

Query: 421  CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
                GK +EA  M+ E+L  G++PN+F   +LI+ Y  +  TD    A  R+   G  P+
Sbjct: 1135 LGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1194



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 149/278 (53%), Gaps = 1/278 (0%)

Query: 168  YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
            YN+ +    K   +++  ++ ++M  +G +   VT++T+IS    +    +A++ +  + 
Sbjct: 918  YNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLM 977

Query: 228  SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
            S G  P   TY  ++D   +AG +E A  L++       + +   ++ L+  +  AGN +
Sbjct: 978  SQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTE 1037

Query: 288  GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +++++M   G+ P++ +Y  ++DT+ +A +     T ++++ + GL P+  TY  L+
Sbjct: 1038 KVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLI 1097

Query: 348  RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               G+++  E+ +S++ EM++KG+  ++  YN+L+      G   EA +++E++  ++  
Sbjct: 1098 DGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEEL-LTKGW 1156

Query: 408  QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            +P+ +T++++I   S  G    A A +  M+  G  PN
Sbjct: 1157 KPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1194



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 142/324 (43%), Gaps = 39/324 (12%)

Query: 183  KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
            +A  L       GV      +++LI      NL + A   F  M   GC PD  TY+ ++
Sbjct: 863  EAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLL 922

Query: 243  DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            DA G++  +E                                     L V EEM   G +
Sbjct: 923  DAMGKSMRIEEM-----------------------------------LKVQEEMHRKGYE 947

Query: 303  PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
               +TYN ++  + +++R  Q   +Y  +   G SP   TY  LL    +A   ED  ++
Sbjct: 948  STYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENL 1007

Query: 363  YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TIC 421
            + EM E G + + T+YN LL      G T++   +F+DM   +   PD  +++ +I T+C
Sbjct: 1008 FNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDM-VDQGINPDIKSYTIIIDTLC 1066

Query: 422  SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD- 480
               G++++    F ++LE G EP+L     LI   GK++R ++ V   N + + GI P+ 
Sbjct: 1067 KA-GQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNL 1125

Query: 481  DRFCGCLLNVMTQTPKEELGKLVE 504
              +   +L++       E GK+ E
Sbjct: 1126 YTYNSLILHLGKAGKAAEAGKMYE 1149



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 119/245 (48%), Gaps = 1/245 (0%)

Query: 166  ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
            + YN  +    K R L++A  L+ +++ +G  P   T+  L+           A   F  
Sbjct: 951  VTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNE 1010

Query: 226  MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
            M  +GC  +   Y+ +++ +  AGN E    L+    ++    D  +++ +I     AG 
Sbjct: 1011 MLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQ 1070

Query: 286  FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
             +  L  + ++  +G++P++ITYN L+D +G++KR  +  +++ EM   G+ PN  TY S
Sbjct: 1071 LNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNS 1130

Query: 346  LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
            L+   G+A    +   +Y E+  KG + +V  YN L+   +  G TD A+  +  M    
Sbjct: 1131 LILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVG- 1189

Query: 406  NCQPD 410
             C P+
Sbjct: 1190 GCLPN 1194



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 135/292 (46%), Gaps = 5/292 (1%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           M + G+  +  T++ L+     +    +A+E +  M   G  P   TYS ++ A+G+  +
Sbjct: 276 MKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRD 335

Query: 251 VEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           VE    L      E   + PN +S    I++ G A  FD    +  +M+  G KP++IT+
Sbjct: 336 VETVLWLLREM--EAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITH 393

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
             L+  +  A R    K ++ +M  +   P+  TY +LL  +G     +  + ++  MK 
Sbjct: 394 TVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKA 453

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G   +V  Y  ++     VG   EA E+F++MK  +   P+ ++++S+I+      +  
Sbjct: 454 DGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMK-QKGIVPEQYSYNSLISGFLKADRFG 512

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +A  +F  M   G +PN +     I  YGK+  +   ++    +   GI PD
Sbjct: 513 DALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPD 564



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 105/473 (22%), Positives = 202/473 (42%), Gaps = 53/473 (11%)

Query: 157 NKLKA---SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
           N +KA   +  V+ Y   +    +   + +A  +FD+M  +G+ P+  ++++LIS     
Sbjct: 449 NAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKA 508

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           +    A+E F+ M   G  P+  T+   I+ YG++G    A   Y+  +++   I P+  
Sbjct: 509 DRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKG--IVPDVV 566

Query: 274 STLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNMITY----------------------- 308
           +    L+G A  G       V+ E+KA+GV P+ ITY                       
Sbjct: 567 AGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDM 626

Query: 309 ------------NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
                       N+L+DT+ +A R  +   I+ ++ +  L P   TY +LL   GR    
Sbjct: 627 IENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKV 686

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           ++ + +  EM       ++  YNT+L      G  ++A ++   M +++ C PD  ++++
Sbjct: 687 KEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM-TTKGCIPDLSSYNT 745

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPEL 475
           +I       + +EA ++F +M +    P+   L +++  + K     + +  + +   + 
Sbjct: 746 VIYGLVKEERYNEAFSIFCQMKKV-LIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQP 804

Query: 476 GITPDDRFCGCLL-NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEA 534
           G   D   C  L+  ++ +   E+  +  E +  S   L       L +   +     EA
Sbjct: 805 GSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEA 864

Query: 535 TEL---FNSISKDVKKAYCNCLIDLCVNLNLLENA----CKLLELGLTLEVYT 580
            EL   F S    +K    N LI   V+ NL++ A     ++ ELG   + +T
Sbjct: 865 HELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFT 917



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 139/306 (45%), Gaps = 13/306 (4%)

Query: 206 LISCARMNNLPNKAVEWFE---RMPSFGCDPDALTYS-SMIDAYGRAGNVEMAFGLYDRA 261
           +I   R  + P +A+E F    R P       +  Y   ++  +GR G++   F +  R 
Sbjct: 185 VIHALRSADGPAEALERFRSAARKPRVAQTTASCNYMLELMRGHGRVGDMAEVFDVMQR- 243

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
             +  + +   F+ +    G  G           MK  G+  N  TYN L+  + ++   
Sbjct: 244 --QIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFD 301

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
            +   +Y+ M  +G+ P+  TY+ L+ A+G+ R  E  L + REM+  G++ +V  Y   
Sbjct: 302 REALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTIC 361

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           + +       DEA+ I   M+ +E C+PD  T + +I +    G++S+A+ +F +M ++ 
Sbjct: 362 IRVLGQAKRFDEAYRILAKME-NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSD 420

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
            +P+     +L+  +G    +  V+   N +   G   +      +++ + Q     +G+
Sbjct: 421 QKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQ-----VGR 475

Query: 502 LVECVE 507
           + E +E
Sbjct: 476 VFEALE 481



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/361 (19%), Positives = 159/361 (44%), Gaps = 6/361 (1%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           +  S + I Y + +K   K    D+A ++F DM++    PD +  ++LI         ++
Sbjct: 594 MGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDE 653

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A   F ++     +P   TY++++   GR G V+    L +   +  +  +   ++T++ 
Sbjct: 654 AWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILD 713

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
                G  +  L++   M   G  P++ +YN ++  + + +R  +  +I+ +M    L P
Sbjct: 714 CLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIP 772

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYRE-MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           ++ T  ++L ++ +    ++ L + ++   + G +   +  ++L+         +++ E 
Sbjct: 773 DYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIE- 831

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           F ++ +S     D +    +I     + K  EA  +  +    G      +  SLI C  
Sbjct: 832 FAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLI-CGL 890

Query: 458 KAQRTDDVVRAL-NRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY 515
             +   D+   L   + ELG  PD+     LL+ M ++ + EE+ K+ E + +   +  Y
Sbjct: 891 VDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTY 950

Query: 516 V 516
           V
Sbjct: 951 V 951


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 167/344 (48%), Gaps = 3/344 (0%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
           ++  M  PD   ++L     + +   ++  +N+ +K F  C  L  A   F  +   G+ 
Sbjct: 88  VVVRMERPDLV-ISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLH 146

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           PD VTF+TL+    + +  ++A+  F +M    C P+ +T++++++   R G +  A  L
Sbjct: 147 PDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMG 316
            DR   +  +     + T++      G+    LN+  +M+ +  + PN++ Y+ ++D++ 
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLC 266

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +  R    + ++ EM + G+ P+  TY S++  +  +    D   + +EM E+ +   V 
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            YN L+      G   EA E++++M       P++ T+SSMI     + ++  AE MF  
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEML-PRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           M   G  PNL    +LI  Y  A+R DD +  L+ + E G+  D
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 151/325 (46%), Gaps = 33/325 (10%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S +V+ YN  +  F K     +AE L+D+ML RG+ P+ +T+S++I      N  + A
Sbjct: 320 KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAA 379

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              F  M + GC P+ +T++++ID Y  A  ++    L           D   ++TLI  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQV-KTIYKEMTDNG 335
           +   G+ +  L++ +EM + G+ P+++T + LLD +   G+ K   ++ K + K   D  
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
            S  +N                            G++  V  YN L++   + G   EA 
Sbjct: 500 ASHPFN----------------------------GVEPDVQTYNILISGLINEGKFLEAE 531

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           E++E+M       PD+ T+SSMI     + ++ EA  MF+ M    F PN+   T+LI  
Sbjct: 532 ELYEEM-PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 456 YGKAQRTDDVVRALNRLPELGITPD 480
           Y KA R DD +     +   GI  +
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVAN 615



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 167/426 (39%), Gaps = 83/426 (19%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD--LDKAERLFDDMLDRG 195
           +L+ +   D  + AL  F    + +    +   T  +   CR+  + +A  L D M++ G
Sbjct: 155 LLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214

Query: 196 VKPDNVTFSTLIS--CARMNN----------------LPNKAV----------------- 220
           ++P  +T+ T++   C + +                 +PN  +                 
Sbjct: 215 LQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 221 -EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              F  M   G  PD  TY+SMI  +  +G    A  L       K   D   ++ LI  
Sbjct: 275 QNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +   G F     +Y+EM   G+ PN ITY++++D   +  R    + ++  M   G SPN
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL----------------- 382
             T+ +L+  Y  A+  +D + +  EM E G+    T YNTL+                 
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQ 454

Query: 383 -----AMCADV-------------GYTDEAFEIFEDMKSSE----------NCQPDSWTF 414
                 +C D+             G   +A E+F+ M+ S+            +PD  T+
Sbjct: 455 EMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTY 514

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + +I+     GK  EAE ++ EM   G  P+    +S+I    K  R D+  +  + +  
Sbjct: 515 NILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGS 574

Query: 475 LGITPD 480
              +P+
Sbjct: 575 KSFSPN 580



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 141/320 (44%), Gaps = 12/320 (3%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F + + L+ A  LF DML     P  V F  L+        P+  +  +++M       D
Sbjct: 54  FHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCD 113

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
             +++ +I  +     +  A   + +        D   F+TL+            LN++ 
Sbjct: 114 IYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFH 173

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           +M     +PN++T+  L++ + R  R  +   +   M ++GL P   TY +++    +  
Sbjct: 174 QMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG 233

Query: 355 YGEDTLSVYREMKEKGMQL-SVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
                L++ R+M+E    + +V +Y+ ++ ++C D G   +A  +F +M+  +   PD +
Sbjct: 234 DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD-GRHSDAQNLFTEMQ-EKGIFPDLF 291

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T++SMI      G+ S+AE +  EMLE    P++    +LI  + K  +  +     + +
Sbjct: 292 TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351

Query: 473 PELGITPD--------DRFC 484
              GI P+        D FC
Sbjct: 352 LPRGIIPNTITYSSMIDGFC 371



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 126/279 (45%), Gaps = 2/279 (0%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A++ F  M      P  + +  ++    R    ++   LY +   ++ R D  +F+ LIK
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIK 122

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            + +       L+ + ++  +G+ P+++T+  LL  +    R  +   ++ +M +    P
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRP 182

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEI 397
           N  T+ +L+    R     + +++   M E G+Q +   Y T++  MC   G T  A  +
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKK-GDTVSALNL 241

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
              M+   +  P+   +S++I      G+ S+A+ +F EM E G  P+LF   S+I  + 
Sbjct: 242 LRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
            + R  D  + L  + E  I+PD      L+N   +  K
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 207/427 (48%), Gaps = 5/427 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           +LAL     KL     ++  +  +  +   + +  A  L D M++ G +PD +TF+TLI 
Sbjct: 63  SLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 122

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
              ++N  ++AV   +RM   GC P+ +TY  +++   + G++++AF L ++    K   
Sbjct: 123 GLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEA 182

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   F+T+I       + D  LN+++EM+  G++PN++TY++L+  +    R      + 
Sbjct: 183 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 242

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            +M +  ++PN  T+ +L+ A+ +     +   ++ +M ++ +   +  YN+L+      
Sbjct: 243 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMH 302

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
              D+A ++FE M  S++C PD  T++++I       +V +   +F EM   G   +   
Sbjct: 303 DRLDKAKQMFEFM-VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVT 361

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE 507
            T+LIQ        D+  +   ++   G+ PD      LL+ +    K E+  ++ + ++
Sbjct: 362 YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQ 421

Query: 508 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYC--NCLIDLCVNLNLLE 564
           KS  KL   +   + E   +     +  +LF S+S K VK      N +I    +  LL+
Sbjct: 422 KSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQ 481

Query: 565 NACKLLE 571
            A  LL+
Sbjct: 482 EAYALLK 488



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 171/349 (48%), Gaps = 9/349 (2%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           +++N +       LA     NK++A+K   +V+++N  +    K R +D A  LF +M  
Sbjct: 154 VVVNGLCKRGDIDLAFNLL-NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 212

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           +G++P+ VT+S+LISC       + A +    M     +P+ +T++++IDA+ + G    
Sbjct: 213 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 272

Query: 254 AFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           A  L+D     K  IDP+ F+  +LI  +      D    ++E M +    P++ TYN L
Sbjct: 273 AEKLHDDMI--KRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 330

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +    ++KR      +++EM+  GL  +  TY +L++        ++   V+++M   G+
Sbjct: 331 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 390

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
              +  Y+ LL    + G  ++A E+F+ M+ SE  + D + +++MI      GKV +  
Sbjct: 391 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE-IKLDIYIYTTMIEGMCKAGKVDDGW 449

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +F  +   G +PN+    ++I      +   +    L ++ E G  PD
Sbjct: 450 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPD 498



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 164/344 (47%), Gaps = 11/344 (3%)

Query: 142 MTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNV 201
           + N  + A+AL     +      ++ Y V +    K  D+D A  L + M    ++ D V
Sbjct: 126 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVV 185

Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID---AYGRAGNVEMAFGLY 258
            F+T+I         + A+  F+ M + G  P+ +TYSS+I    +YGR  +      L 
Sbjct: 186 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQL--LS 243

Query: 259 DRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           D       +I+PN   F+ LI  +   G F     ++++M    + P++ TYN+L++   
Sbjct: 244 DMIEK---KINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFC 300

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
              R  + K +++ M      P+ +TY +L++ + +++  ED   ++REM  +G+     
Sbjct: 301 MHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 360

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            Y TL+      G  D A ++F+ M  S+   PD  T+S ++      GK+ +A  +F+ 
Sbjct: 361 TYTTLIQGLFHDGDCDNAQKVFKQM-VSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDY 419

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           M ++  + ++++ T++I+   KA + DD       L   G+ P+
Sbjct: 420 MQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPN 463



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 141/283 (49%), Gaps = 1/283 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K +  ++ +N  +  F K     +AE+L DDM+ R + PD  T+++LI+   M++  +KA
Sbjct: 249 KINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKA 308

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
            + FE M S  C PD  TY+++I  + ++  VE    L+    +     D   ++TLI+ 
Sbjct: 309 KQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 368

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
               G+ D    V+++M + GV P+++TY+ LLD +    +  +   ++  M  + +  +
Sbjct: 369 LFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 428

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
              Y +++    +A   +D   ++  +  KG++ +V  YNT+++         EA+ + +
Sbjct: 429 IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLK 488

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            MK  +   PDS T++++I      G  + +  +  EM    F
Sbjct: 489 KMK-EDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRF 530



 Score = 45.8 bits (107), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 2/116 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR--DLDKAERLFDDMLDR 194
           I+L+ + N      AL  F    K+  ++ +Y  T  +   C+   +D    LF  +  +
Sbjct: 399 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 458

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           GVKP+ VT++T+IS      L  +A    ++M   G  PD+ TY+++I A+ R G+
Sbjct: 459 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 514


>gi|410110081|gb|AFV61120.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           camara]
          Length = 381

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 38  DLVAYNAMINVFGKAKLFREARSLISEMKTAGVXPNTTSYSTLLTMYVENKKFLEALSVF 97

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 98  SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 155

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 156 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSI 215

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 216 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 275

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 276 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKK 330

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 331 YSNVVEVFDKMRGLGYFPDSNVITVVLN 358



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  + ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 163 AIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 222

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 223 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 278

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 279 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVF 338

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N    +L AYG+ +  +    VY EM+E G
Sbjct: 339 DKMRGLGYFPDSNVITVVLNAYGKLQEFDKANDVYMEMQEVG 380



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 131/278 (47%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 113 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 172

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SMI  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 173 KNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 230

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 231 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 289

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 290 LAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGL-G 345

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   + +  + +  GK+ E   A  ++ EM E G
Sbjct: 346 YFPDS---NVITVVLNAYGKLQEFDKANDVYMEMQEVG 380


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 153/314 (48%), Gaps = 4/314 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  + +  K R  D A  L D M  RGV+    TFS L+       L  +AV  F RM 
Sbjct: 146 YNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFNRME 205

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
            +GC PD +++S +I +  +      A   +D  ++ K+  D   +++L+  +  AG+  
Sbjct: 206 DYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLKH-KFEPDVIVYTSLVHGWCRAGDIA 264

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V+ +MK  GVKPN+ TY+ ++D++ R  +  +   ++ EM D G  PN  T+ SL+
Sbjct: 265 KAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLM 324

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSEN 406
           R + +A   E  L VY +MK  G       YN L+ + C D    DEA ++ + M   + 
Sbjct: 325 RVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENL-DEAVKVLDTM-VKKG 382

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             P++ TF+S+    +    V+ A  M+ +M E    PN      L++ +  ++  D V+
Sbjct: 383 VAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVL 442

Query: 467 RALNRLPELGITPD 480
           +    + E  + P+
Sbjct: 443 KLKKEMDESEVEPN 456



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 157/308 (50%), Gaps = 3/308 (0%)

Query: 137 IILNNMTNPDTAALALTYFTN-KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           I+++++     A+ A  +F + K K   +VI+Y   +  + +  D+ KAE +F DM + G
Sbjct: 218 IVISSLCKKRRASEAELFFDSLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAG 277

Query: 196 VKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           VKP+  T+S +I S  R   +  +A + F  M   GCDP+A+T++S++  + +AG  E  
Sbjct: 278 VKPNVYTYSIVIDSLCRCGQI-TRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKV 336

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             +Y++ +      D  +++ LI+ +    N D  + V + M   GV PN  T+N++   
Sbjct: 337 LQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGC 396

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +           +Y +M +    PN  TY  L+R +  ++  +  L + +EM E  ++ +
Sbjct: 397 IAELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPN 456

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           V  Y  L+ M  + G+ + A+ + ++M   +  +P+   + +++ +    G++ + E + 
Sbjct: 457 VNTYRILILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELLRNAGQLKKHEELV 516

Query: 435 NEMLEAGF 442
            +M+  GF
Sbjct: 517 EKMVARGF 524



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 125/260 (48%), Gaps = 41/260 (15%)

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
           W   +  F   P+   Y+ MID  G+  + ++A+ L D  ++   RI  + FS L++ Y 
Sbjct: 132 WATTLEGFPSSPEP--YNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYV 189

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AG     ++ +  M+  G KP+ ++++ ++ ++ + +R  + +  +  +  +   P+  
Sbjct: 190 RAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSL-KHKFEPDVI 248

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            Y SL+  + RA                                   G   +A E+F DM
Sbjct: 249 VYTSLVHGWCRA-----------------------------------GDIAKAEEVFSDM 273

Query: 402 KSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           K +   +P+ +T+S +I ++C C G+++ A  +F+EM++AG +PN     SL++ + KA 
Sbjct: 274 KEA-GVKPNVYTYSIVIDSLCRC-GQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAG 331

Query: 461 RTDDVVRALNRLPELGITPD 480
           RT+ V++  N++  LG   D
Sbjct: 332 RTEKVLQVYNQMKRLGCAAD 351



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 93/198 (46%), Gaps = 16/198 (8%)

Query: 308 YNNLLDTMGRAKR---PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           YN ++D  G+ +     W +  +   M   G+    +T++ L+R Y RA    + +  + 
Sbjct: 146 YNEMIDLAGKLRHFDLAWHLIDL---MKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFN 202

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
            M++ G +     ++ +++         EA   F+ +K     +PD   ++S++      
Sbjct: 203 RMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLK--HKFEPDVIVYTSLVHGWCRA 260

Query: 425 GKVSEAEAMFNEMLEAGFEPNLF----VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           G +++AE +F++M EAG +PN++    V+ SL +C G+  R  DV    + + + G  P+
Sbjct: 261 GDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRC-GQITRAHDV---FSEMIDAGCDPN 316

Query: 481 DRFCGCLLNVMTQTPKEE 498
                 L+ V  +  + E
Sbjct: 317 AVTFNSLMRVHVKAGRTE 334


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 160/330 (48%), Gaps = 1/330 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           + S  V  YN+ ++ F    +L K    F +M   G  P+ VT++TLI         ++A
Sbjct: 209 RVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEA 268

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
               + M S G  P+ ++Y+ +I+   R G+++ A+ + +    + +  D   ++TL+  
Sbjct: 269 FGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNG 328

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           Y   GNF   L ++ EM   GV P+++TY  L+++M +A+   +    + +M   GL PN
Sbjct: 329 YCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPN 388

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY +L+  + R     +   +  EM E G   SV  YN  +     +   +EA  + +
Sbjct: 389 ERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQ 448

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +M   +   PD  ++S++I+    +G++  A  M  EM+E G  P+    +SLIQ   + 
Sbjct: 449 EM-VEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEM 507

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           +R  +       + ++G+ PD+     L+N
Sbjct: 508 RRLTEACDLSQEMLDMGLPPDEFTYTTLIN 537



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 174/394 (44%), Gaps = 52/394 (13%)

Query: 99  YNSLVKLAADLDSCSATEDDVFSVLRCLGDDF-LEQDCVIILNNMTNPDTAALALTYFTN 157
           Y +   LA +L + SA++    S+ +CL D + +      + + M    +    +    N
Sbjct: 105 YKTAQTLAQEL-ALSASDPSGSSIFQCLKDSYHVYNSSSAVFDLMVKSYSHLNMIDQAVN 163

Query: 158 KLKASKE------VILYNVTMKVFRKCRDLDK--AERLFDDMLDRGVKPDNVTFSTLISC 209
            +  +K       V+ YN  +    + R   K  AE ++ +M+   V P+  T++ LI  
Sbjct: 164 TINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRG 223

Query: 210 ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
                   K +  F  M   GC P+ +TY+++IDAY + G                 RID
Sbjct: 224 FCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMG-----------------RID 266

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQVKT 326
             AF  L                 + M + G++PN+I+YN +++ +   G  K  W+   
Sbjct: 267 -EAFGLL-----------------KSMSSKGMQPNLISYNVIINGLCREGSMKEAWE--- 305

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           I +EM   G +P+  TY +LL  Y +       L ++ EM   G+  SV  Y  L+    
Sbjct: 306 ILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMC 365

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
                + A E F+ M+     +P+  T++++I   S +G ++EA  + NEM E+GF P++
Sbjct: 366 KARNLNRAMEFFDQMR-IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSV 424

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               + I  +   +R ++ +  +  + E G+ PD
Sbjct: 425 VTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPD 458



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 166/394 (42%), Gaps = 30/394 (7%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
            S  V+ Y   +    K R+L++A   FD M  RG++P+  T++TLI       L N+A 
Sbjct: 350 VSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAY 409

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
                M   G  P  +TY++ I  +     +E A G+      +    D  ++ST+I  +
Sbjct: 410 RILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGF 469

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G  D    + +EM   GV P+ +TY++L+  +   +R  +   + +EM D GL P+ 
Sbjct: 470 CRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDE 529

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY +L+ AY         L ++ EM  KG       Y+ L+        T EA  +   
Sbjct: 530 FTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFK 589

Query: 401 MKSSENCQPDSWTFSSMITICS---------------CRGKVSEAEAMFNEMLEAGFEPN 445
           +   E+  P   T+ ++I  CS                +G + EA+ +F  M+E   +P 
Sbjct: 590 LIYEESV-PSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPG 648

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCLLNV-----MTQTPKE 497
             V   +I  +    R  ++ +A N   E+   G  P       L+       M +   E
Sbjct: 649 EAVYNVIIHGHC---RGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSE 705

Query: 498 ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFK 531
            +G  +     + ++L    K+L+E    EG+ +
Sbjct: 706 VIGDTLRSCRLNEAELA---KVLVEINHKEGNME 736



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 148/317 (46%), Gaps = 38/317 (11%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFE 224
           + YN  +  + K  +  +A  +  +M+  GV P  VT++ LI S  +  NL N+A+E+F+
Sbjct: 320 VTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNL-NRAMEFFD 378

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M   G  P+  TY+++ID + R G +           NE +RI                
Sbjct: 379 QMRIRGLRPNERTYTTLIDGFSRQGLL-----------NEAYRI---------------- 411

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                LN   EM   G  P+++TYN  +      +R  +   + +EM + GL+P+  +Y+
Sbjct: 412 -----LN---EMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYS 463

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +++  + R    +    + +EM EKG+      Y++L+    ++    EA ++ ++M   
Sbjct: 464 TIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDM 523

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               PD +T++++I      G +++A  + +EM+  GF P+    + LI    K  RT +
Sbjct: 524 -GLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTRE 582

Query: 465 VVRALNRLPELGITPDD 481
             R L +L      P D
Sbjct: 583 AKRLLFKLIYEESVPSD 599



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 4/126 (3%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           + +A+R+F+ M++R  KP    ++ +I    R  NLP KA   ++ M   G  P  +T  
Sbjct: 630 MHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLP-KAFNLYKEMIHSGFVPHTVTVI 688

Query: 240 SMIDAYGRAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           ++I A  + G N EM+  + D  R+ +   +      L+++    GN +  LNV  +M  
Sbjct: 689 TLIKALFKEGMNEEMSEVIGDTLRSCRLN-EAELAKVLVEINHKEGNMEAVLNVLTDMAK 747

Query: 299 IGVKPN 304
            G+ PN
Sbjct: 748 DGLLPN 753


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 177/403 (43%), Gaps = 74/403 (18%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEW 222
           V+ YN  +        L  A R FD ML  GV P+  T++ L+   C R +    +A+  
Sbjct: 156 VLAYNAVLLALSDA-SLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHR--KEALSI 212

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
              M   GC P+ +TY++++ A+ RAG V+ A  L    R    + +   F++++     
Sbjct: 213 LRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCK 272

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           AG  +    V++EM   G+ P+ ++YN L+    +A    +  +++ EMT  G+ P+  T
Sbjct: 273 AGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVT 332

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQL----------------------------- 373
           + SL+    +A   E  +++ R+M+E+G+Q+                             
Sbjct: 333 FTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMK 392

Query: 374 ------SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-----------------ENCQ-- 408
                 SV  YN L+     VG  DEA E+  +M++                  +NC   
Sbjct: 393 QCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTH 452

Query: 409 ---------------PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
                          PD+ T+SS+I +     ++S+A  +F  M++ G +P+ F  TSLI
Sbjct: 453 SAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLI 512

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
             + K    +  +   +++ + G+ PD      L+N ++++ +
Sbjct: 513 DGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSAR 555



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 156/309 (50%), Gaps = 3/309 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ +N  +    K   ++ A ++FD+M+  G+ PD V+++TL+         ++A+  F 
Sbjct: 260 LVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFA 319

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  PD +T++S+I    +AGN+E A  L  + R    +++   F+ LI  +   G
Sbjct: 320 EMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKG 379

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  L     MK   +KP+++ YN L++      R  + + +  EM   GL P+  TY+
Sbjct: 380 FLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYS 439

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKS 403
           +++ AY +         + ++M EKG+      Y++L+  +C +   +D A  +F++M  
Sbjct: 440 TIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSD-AHVLFKNM-I 497

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               QPD +T++S+I      G V  A ++ ++M++AG  P++   + LI    K+ R  
Sbjct: 498 KLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAM 557

Query: 464 DVVRALNRL 472
           +  + L +L
Sbjct: 558 EAQQLLFKL 566



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 142/309 (45%), Gaps = 26/309 (8%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +  +     +D+A  L  +M  +G+KPD VT+ST+IS    N   + A E  +
Sbjct: 400 VVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQ 459

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M   G  PDA+TYSS+I        +  A  L+        + D   +++LI  +   G
Sbjct: 460 QMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEG 519

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N +  L+++++M   GV P+++TY+ L++ + ++ R  + + +  ++      P    Y 
Sbjct: 520 NVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYD 579

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+    +A   +  L++ +    KG+                    +EA ++++ M   
Sbjct: 580 ALMHCCRKAEL-KSVLALLKGFCMKGLM-------------------NEADKVYQSML-D 618

Query: 405 ENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQ 460
            N   D   +S +I    CR G V +A +   +ML+ GF PN     SLI+     G   
Sbjct: 619 RNWNLDGSVYSVLIH-GHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVV 677

Query: 461 RTDDVVRAL 469
             D V++ L
Sbjct: 678 EADQVIQQL 686


>gi|410110127|gb|AFV61143.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           origanoides]
          Length = 408

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 164/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+     N    +A+  F
Sbjct: 84  DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLXMYVENKKFLEALSVF 143

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 144 SEMREIKCLLDLXTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 201

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 202 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 261

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 262 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 321

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 322 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVKDITVFERMIHLLSKYKK 376

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 377 YSNVVEVFDKMRGLGYFPDSNVIAVVLN 404



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 151/330 (45%), Gaps = 36/330 (10%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LFD+M  R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           +  +   A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTD--------------------------------- 333
           +Y+ LL      K+  +  +++ EM +                                 
Sbjct: 122 SYSTLLXMYVENKKFLEALSVFSEMREIKCLLDLXTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 334 --NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 241

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  +
Sbjct: 242 EKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 300

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +I  Y +A       R L+ L      P D
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKRPDNIPRD 330



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 1/205 (0%)

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +     +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  + 
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
           T Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 121 TSYSTLLXMYVENKKFLEALSVFSEMREIK-CLLDLXTCNIMIDVYGQLGMAKEADKLFW 179

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQ 460
            M + G EPN+    +L++ YG A+
Sbjct: 180 GMRKMGIEPNVVSYNTLLRVYGDAE 204


>gi|410110141|gb|AFV61150.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           turbinata]
          Length = 441

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 174/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 70  AISIFS-RLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL 128

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 129 TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 186

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 187 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 246

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++   
Sbjct: 247 NLIQEMQSRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 306

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG   +
Sbjct: 307 ERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKD 361

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I    K ++  +V+   +++  LG  PD      +LN
Sbjct: 362 ITVFERMIHLLSKYKKYSNVIEVFDKMRGLGYFPDSDVIAIVLN 405



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 151/330 (45%), Gaps = 36/330 (10%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LFD+M  R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 62

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           +  +   A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  
Sbjct: 63  KLCDYSKAISIFSRLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 122

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTD--------------------------------- 333
           +Y+ LL      K+  +  +++ EM +                                 
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 182

Query: 334 --NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       
Sbjct: 183 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 242

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  +
Sbjct: 243 EKANNLIQEMQ-SRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 301

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +I  Y +A       R L+ L      P D
Sbjct: 302 MIVAYERAGLVAHAKRLLHELKRPDNIPRD 331



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 1/205 (0%)

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 2   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELS 61

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +     +  +I+  +  +G  P+   Y +++  +G+A+   +  S+  EMK  G+  + 
Sbjct: 62  RKLCDYSKAISIFSRLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 121

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
           T Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 122 TSYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFW 180

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQ 460
            M + G EPN+    +L++ YG A+
Sbjct: 181 GMRKMGIEPNVVSYNTLLRVYGDAE 205



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 114/236 (48%), Gaps = 4/236 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RGV+P+++T+ST+IS
Sbjct: 210 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGVEPNSITYSTIIS 269

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 270 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 325

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 326 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVIEVF 385

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
            +M   G  P+ +  A +L AYG+ +  +    VY EM+E G   S  ++  +L++
Sbjct: 386 DKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVGCVFSDQVHFQMLSL 441



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 130/278 (46%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 160 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 219

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    ++    ++PN+  +ST+I ++G  G  
Sbjct: 220 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG--VEPNSITYSTIISIWGKVGKL 277

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 278 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 336

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 337 LAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVIEVFDKMRGL-G 392

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   +    + +  GK+ E   A  ++ EM E G
Sbjct: 393 YFPDSDVIA---IVLNAYGKLQEFDKANDVYMEMQEVG 427


>gi|410110093|gb|AFV61126.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           microcephala]
          Length = 440

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 84  DLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLLTMYVENKKFLEALSVF 143

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 144 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 201

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 202 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 261

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 262 TYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHEL 321

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 322 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKK 376

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 377 YSNVVEVFDKMRGLGYFPDSDVIAIVLN 404



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 152/330 (46%), Gaps = 36/330 (10%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LFD+M  R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           +  +   A  ++ R +   +  D  A++ +I ++G A  F    ++  EMKA GV PN  
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTA 121

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTD--------------------------------- 333
           +Y+ LL      K+  +  +++ EM +                                 
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 334 --NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 241

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  +
Sbjct: 242 EKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQT 300

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +I  Y +A       R L+ L      P D
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKRPDNIPRD 330



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 1/205 (0%)

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +     +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  + 
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNT 120

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 121 ASYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFW 179

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQ 460
            M + G EPN+    +L++ YG A+
Sbjct: 180 GMRKMGIEPNVVSYNTLLRVYGDAE 204



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 114/236 (48%), Gaps = 4/236 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 209 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 268

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 269 IWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 324

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 325 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVF 384

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
            +M   G  P+ +  A +L AYG+ +  +    VY EM+E G   S  ++  +L++
Sbjct: 385 DKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVGCVFSDEVHFQMLSL 440


>gi|255661212|gb|ACU25775.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 426

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 187/381 (49%), Gaps = 16/381 (4%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDTA---ALALTYFTNKLKASK---EVILYNV 170
           DD  S L+ +  D +  D V+  N +         + A++ F+ +LK S    +++ YN 
Sbjct: 26  DDALSWLQKMEQDRVPGDLVLYSNLIELSRKLYDYSKAISIFS-RLKRSGIVPDLVAYNS 84

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
            + VF K +   +A  L  +M   GV PD V++STL++    N    +A+  F  M    
Sbjct: 85  MINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTLLTMYVENQKFLEALSVFAEMREIK 144

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDG 288
           C  D  T + MID YG+    + A  L+   R  K  I+PN  +++TL+++YG A  F  
Sbjct: 145 CLLDLTTCNIMIDVYGQLDMAKEADKLFWSMR--KMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            ++++  M+   ++ N++TYN ++   G+     +   + +EM   G+ PN  TY++++ 
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHSRGIEPNAITYSTIIS 262

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            +G+    +    ++++++  G+++   LY T++      G    A  +  ++K     +
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHAKRLLHELK-----R 317

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD+    + I I +  G++ EA  +F + ++AG   ++ V   ++  + K ++  +VV  
Sbjct: 318 PDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMVDLFSKYKKYPNVVEV 377

Query: 469 LNRLPELGITPDDRFCGCLLN 489
             ++  LG  PD      +LN
Sbjct: 378 FEKMRGLGYFPDSNVIALVLN 398



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 148/305 (48%), Gaps = 10/305 (3%)

Query: 185 ERLFDDML--------DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           E LFDD L        DR V  D V +S LI  +R     +KA+  F R+   G  PD +
Sbjct: 22  EGLFDDALSWLQKMEQDR-VPGDLVLYSNLIELSRKLYDYSKAISIFSRLKRSGIVPDLV 80

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            Y+SMI+ +G+A     A  L    R      D  ++STL+ +Y     F   L+V+ EM
Sbjct: 81  AYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTLLTMYVENQKFLEALSVFAEM 140

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           + I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LLR YG A   
Sbjct: 141 REIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDAELF 200

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            + + ++R M+ K ++ +V  YNT++ +       ++A  + ++M  S   +P++ T+S+
Sbjct: 201 GEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEM-HSRGIEPNAITYST 259

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R L+ L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHAKRLLHELKRPD 319

Query: 477 ITPDD 481
             P D
Sbjct: 320 NIPRD 324



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+ +T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHSRGIEPNAITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++D   + K+   V  ++
Sbjct: 319 DNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMVDLFSKYKKYPNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           ++M   G  P+ N  A +L AYG+    +    VY EM+++G
Sbjct: 379 EKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYLEMQDEG 420



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 92/218 (42%), Gaps = 36/218 (16%)

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+  + 
Sbjct: 12  YSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLYDYSKAISIFSRLK 71

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
            +G+ P+   Y S++  +G+A+   +  S+  EM+  G                      
Sbjct: 72  RSGIVPDLVAYNSMINVFGKAKLFREARSLISEMRMVG---------------------- 109

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
                           PD+ ++S+++T+     K  EA ++F EM E     +L     +
Sbjct: 110 --------------VVPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCLLDLTTCNIM 155

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
           I  YG+     +  +    + ++GI P+      LL V
Sbjct: 156 IDVYGQLDMAKEADKLFWSMRKMGIEPNVVSYNTLLRV 193



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 20/187 (10%)

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           +E+G+      Y+TL+      G  D+A    + M+  +    D   +S++I +      
Sbjct: 1   RERGLSPXRYTYSTLITHFGKEGLFDDALSWLQKMEQ-DRVPGDLVLYSNLIELSRKLYD 59

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            S+A ++F+ +  +G  P+L    S+I  +GKA+   +    ++ +  +G+ PD      
Sbjct: 60  YSKAISIFSRLKRSGIVPDLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYST 119

Query: 487 LLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQ------DIEG--DFKKEATE 536
           LL +  +  K  E L    E  E         +K LL+        D+ G  D  KEA +
Sbjct: 120 LLTMYVENQKFLEALSVFAEMRE---------IKCLLDLTTCNIMIDVYGQLDMAKEADK 170

Query: 537 LFNSISK 543
           LF S+ K
Sbjct: 171 LFWSMRK 177


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 167/352 (47%), Gaps = 2/352 (0%)

Query: 150 LALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC 209
           LAL     +L     V L    ++VF +   +D A  L D+M       D V ++  I C
Sbjct: 81  LALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDC 140

Query: 210 ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
                  + A ++F  M + G  PD +TY+SM+    +A  ++ A  ++++    +    
Sbjct: 141 FGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPC 200

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
             A++T+I  YG+AG FD   ++ E  +A G  P+++ YN +L  +G+  +  +   I++
Sbjct: 201 AYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFE 260

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           EM  + + PN  TY  ++    +A   E    V   MKE G+  +V   N ++       
Sbjct: 261 EMKRDAM-PNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQ 319

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
             DEA  IFE M   + C PD  TF S+I     +G+V +A  ++  ML+A   PN+ V 
Sbjct: 320 KLDEACSIFEGM-DYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVY 378

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
           TSLI+ + K  R +D  +    +   G +PD       ++ + +  + E G+
Sbjct: 379 TSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGR 430



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 150/317 (47%), Gaps = 3/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V++Y   ++ F KC   +   +++ +M+  G  PD +  +T + C        K    FE
Sbjct: 375 VVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFE 434

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            + + G  PD  +YS +I +  +AG     + LY   +++   +D  A++T+I  +  +G
Sbjct: 435 EIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSG 494

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +    + EEMK +G  P ++TY +++D + +  R  +   +++E   NG+  N   Y+
Sbjct: 495 KVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYS 554

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL+  +G+    ++   V  EM +KG+  +V  +N LL         +EA   F+ MK  
Sbjct: 555 SLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDL 614

Query: 405 ENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           + C P+  T+  +I  +C  R K ++A   + EM + G +PN    T++I    K+    
Sbjct: 615 K-CTPNQITYCILINGLCKVR-KFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVA 672

Query: 464 DVVRALNRLPELGITPD 480
                  R    G  PD
Sbjct: 673 QASSLFERFRASGGIPD 689



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 159/332 (47%), Gaps = 4/332 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++LYNV +  F K   +D A + F +M   G+ PD+VT+++++      N  ++AVE F
Sbjct: 130 DIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIF 189

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E+M      P A  Y++MI  YG AG  + A+ L +R R +       A++ ++   G  
Sbjct: 190 EQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKK 249

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D  L ++EEMK   + PN+ TYN ++  + +A        +   M + GL PN  T 
Sbjct: 250 GKTDKALRIFEEMKRDAM-PNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTI 308

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++    +A+  ++  S++  M  K        + +L+      G  D+A+ I+E M  
Sbjct: 309 NIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLD 368

Query: 404 SENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           ++   P+   ++S+I     C  K  +   M+ EM+ +G  P+L +L + + C  KA  T
Sbjct: 369 ADQI-PNVVVYTSLIRNFFKCDRK-EDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGET 426

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           +        +   G  PD R    L++ + + 
Sbjct: 427 EKGRALFEEIKARGFLPDTRSYSILIHSLVKA 458



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 140/309 (45%), Gaps = 3/309 (0%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K R L +A  L   M     +P    ++TLI         ++ +  F +M   G + +  
Sbjct: 38  KSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVH 97

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
             +++I  + R G V+ A  L D  ++  +  D   ++  I  +G  G  D     + EM
Sbjct: 98  LLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEM 157

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           KA G+ P+ +TY +++  + +A R  +   I+++M  N   P    Y +++  YG A   
Sbjct: 158 KANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKF 217

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           ++  S+    + KG   SV  YN +L      G TD+A  IFE+MK   +  P+  T++ 
Sbjct: 218 DEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMK--RDAMPNLPTYNI 275

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I +    G V  A  + + M EAG  PN+  +  +I    KAQ+ D+       +    
Sbjct: 276 IIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKV 335

Query: 477 ITPDD-RFC 484
            +PD   FC
Sbjct: 336 CSPDGATFC 344



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 165/364 (45%), Gaps = 36/364 (9%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ + +  K  +++ A ++ D M + G+ P+  T + +I         ++A   FE M 
Sbjct: 273 YNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMD 332

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C PD  T+ S+ID  G+ G V+ A+ +Y+R  +     +   +++LI+ +      +
Sbjct: 333 YKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKE 392

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +Y+EM   G  P+++  N  +D + +A    + + +++E+   G  P+  +Y+ L+
Sbjct: 393 DGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILI 452

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMC--------------------- 385
            +  +A +  +T  +Y  MK++G  L    YNT++   C                     
Sbjct: 453 HSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHH 512

Query: 386 -------------ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
                        A +   DEA+ +FE+ KS+   + +   +SS+I      G+V EA  
Sbjct: 513 PTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSN-GIELNQVIYSSLIDGFGKVGRVDEAYL 571

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           +  EM++ G  PN++    L+    KA+  ++ +     + +L  TP+      L+N + 
Sbjct: 572 VMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLC 631

Query: 493 QTPK 496
           +  K
Sbjct: 632 KVRK 635



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 159/351 (45%), Gaps = 1/351 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +++L N  M    K  + +K   LF+++  RG  PD  ++S LI          +  E
Sbjct: 407 SPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYE 466

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            +  M   GC  D   Y+++ID + ++G V  A+ L +  +          + +++    
Sbjct: 467 LYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLA 526

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                D    ++EE K+ G++ N + Y++L+D  G+  R  +   + +EM   GL+PN  
Sbjct: 527 KIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVY 586

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+  LL    +A    + L  ++ MK+     +   Y  L+     V   ++AF  +++M
Sbjct: 587 TWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEM 646

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           +  +  +P++ T+++MI+  +  G V++A ++F     +G  P+     ++I+    A R
Sbjct: 647 Q-KQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANR 705

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSK 512
             D  +        G +   + C  LL+ + +    E   +V  V +  +K
Sbjct: 706 ALDAYQLFEETRLKGCSIHTKTCVALLDALHKAECLEQAAIVGAVLRETAK 756



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 148/321 (46%), Gaps = 4/321 (1%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDA 235
           + R+ D  E++  +M   G  P N T   L+ SC +   L  +A +  + M  F   P  
Sbjct: 3   RTRNFDYLEQILGEMSIAGFGPTNYTCVELVASCVKSRKLI-EAFDLLQMMRHFKFRPAF 61

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
             Y+++I A    G  +    L+++ +   + ++ +  +TLI+++   G  D  L++ +E
Sbjct: 62  SAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDE 121

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           MK+     +++ YN  +D  G+  +       + EM  NGL P+  TY S++    +A  
Sbjct: 122 MKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANR 181

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            ++ + ++ +M++         YNT++      G  DEA+ + E  + ++ C P    ++
Sbjct: 182 LDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQR-AKGCIPSVVAYN 240

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
            ++T    +GK  +A  +F EM      PNL     +I    KA   +   +  + + E 
Sbjct: 241 CILTCLGKKGKTDKALRIFEEMKRDAM-PNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEA 299

Query: 476 GITPDDRFCGCLLNVMTQTPK 496
           G+ P+ R    +++ + +  K
Sbjct: 300 GLFPNVRTINIMIDRLCKAQK 320



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 2/127 (1%)

Query: 138 ILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           +L+ +   +    AL  F +   LK +   I Y + +    K R  +KA   + +M  +G
Sbjct: 591 LLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQG 650

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           +KP+ +T++ +IS    +    +A   FER  + G  PD+ +Y++MI+    A     A+
Sbjct: 651 LKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAY 710

Query: 256 GLYDRAR 262
            L++  R
Sbjct: 711 QLFEETR 717


>gi|413917008|gb|AFW56940.1| plastid transcriptionally active 12-like protein [Zea mays]
          Length = 600

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 157/318 (49%), Gaps = 7/318 (2%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           + K  D  +AER+   M  +G +P  ++ + L+          KA   F RM + G  P 
Sbjct: 150 YGKLGDFSRAERVLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAEAVFRRMQTSGPQPS 209

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEK---WRIDPNAFSTLIKLYGTAGNFDGCLN 291
            +TY  ++ +       + A  +++   NEK   ++ D   F  +I +Y  AG++     
Sbjct: 210 PVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYAQARK 269

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           ++ +M   G+  + +T+N+L+      K   +V  IY +M   GL P+  +Y+ L++AYG
Sbjct: 270 LFAQMSERGIPLSTVTFNSLMSFETEYK---EVSNIYDQMQRAGLKPDVVSYSLLIKAYG 326

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           +AR  E+ L+V+ EM + G++ +   YN LL   A  G  +EA  +F  M+     +PD 
Sbjct: 327 KARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVEEANTVFRAMRR-HRVEPDL 385

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            ++++M+       +++ AE  F  + E G +PN+ V  +L++ Y K    + V+R   R
Sbjct: 386 CSYTTMVLAYVNASEMNGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNLEKVMRVYER 445

Query: 472 LPELGITPDDRFCGCLLN 489
           +   G+ P+      +++
Sbjct: 446 MRIQGVEPNQTIYTTIMD 463



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 163/372 (43%), Gaps = 55/372 (14%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVI-----LYNVTMKVFRKCRDLDKAERLFDDM 191
           IIL ++   D    A   F + L   +        ++++ + +++K  D  +A +LF  M
Sbjct: 215 IILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYAQARKLFAQM 274

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
            +RG+    VTF++L+S         +    +++M   G  PD ++YS +I AYG+A   
Sbjct: 275 SERGIPLSTVTFNSLMS---FETEYKEVSNIYDQMQRAGLKPDVVSYSLLIKAYGKARRE 331

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           E A                                   L V+EEM   GV+P   +YN L
Sbjct: 332 EEA-----------------------------------LAVFEEMLDAGVRPTRKSYNIL 356

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           LD    +    +  T+++ M  + + P+  +Y +++ AY  A         +R +KE G+
Sbjct: 357 LDAFAISGLVEEANTVFRAMRRHRVEPDLCSYTTMVLAYVNASEMNGAEKFFRRIKEDGL 416

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE-- 429
           + +V +Y TL+   + +   ++   ++E M+  +  +P+   ++   TI   +G+ S+  
Sbjct: 417 KPNVVVYGTLMKGYSKLNNLEKVMRVYERMR-IQGVEPNQTIYT---TIMDAQGRNSDFG 472

Query: 430 -AEAMFNEMLEAGFEPNLF---VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 485
            A   F EM   G+ P+     +L SL +   + Q  +D+V   N   +L + PD    G
Sbjct: 473 NAVIWFKEMEARGYPPDQKAKNILLSLAKTPEEEQEANDLVG--NGPVQLEVKPDGEVDG 530

Query: 486 CLLNVMTQTPKE 497
              + + QT  E
Sbjct: 531 DDGHEVIQTDAE 542



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 112/228 (49%), Gaps = 9/228 (3%)

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           W      F  L+  YG  G+F     V + M   G +P++I+   L++  GR K+  + +
Sbjct: 136 WDFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAE 195

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM---KEKGMQLSVTLYNTLL 382
            +++ M  +G  P+  TY  +L++       ++  +++ ++   K    +    +++ ++
Sbjct: 196 AVFRRMQTSGPQPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMI 255

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
            M    G   +A ++F  M  SE   P  + TF+S+++  +   +VS    ++++M  AG
Sbjct: 256 YMYKKAGDYAQARKLFAQM--SERGIPLSTVTFNSLMSFETEYKEVSN---IYDQMQRAG 310

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
            +P++   + LI+ YGKA+R ++ +     + + G+ P  +    LL+
Sbjct: 311 LKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLD 358


>gi|410110115|gb|AFV61137.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           hederifolia]
          Length = 364

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 21  DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVF 80

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 81  SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 138

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 139 DAELFGEAIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 198

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 199 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 258

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 259 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKK 313

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 314 YSNVVEVFDKMRGLGYFPDSDVIAIVLN 341



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 146 AIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 205

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 206 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 261

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 262 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVF 321

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ +  A +L AYG+ +  +    VY EM+E G
Sbjct: 322 DKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 363



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 130/278 (46%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 96  NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 155

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 156 KSIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 213

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 214 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 272

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 273 LAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGL-G 328

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   +    + +  GK+ E   A  ++ EM E G
Sbjct: 329 YFPDSDVIA---IVLNAYGKLQEFDKANDVYMEMQEVG 363


>gi|255661162|gb|ACU25750.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 426

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 164/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVF 137

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 195

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM + G+ PN  
Sbjct: 196 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSI 255

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+ +   LY T++      G    A  +  ++
Sbjct: 256 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL 315

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+      I I +  G+  EA  +F + ++AG   ++ V   +I  + K ++
Sbjct: 316 K-----RPDNIPRDIAIHILAGAGRXEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKK 370

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 371 YGNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G + +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 137/288 (47%), Gaps = 1/288 (0%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +  
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                 K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G D D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILAGAGRXEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420


>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
 gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
          Length = 1443

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 130/556 (23%), Positives = 232/556 (41%), Gaps = 51/556 (9%)

Query: 167  LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD----NVTFSTLISCARMNNLP------ 216
            ++N  +  + +    +KA  +FD+M+  G  P     N     LI   R++ L       
Sbjct: 782  IWNALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVGEL 841

Query: 217  -------------------NKAVEWFERMPSF------GCDPDALTYSSMID---AYGRA 248
                                KA + FE M  +      G  P+   Y SM      + R 
Sbjct: 842  QDMDFKISKSTVLLMLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRF 901

Query: 249  GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
             +VE+     + A    ++ D + F++L+ +Y  AGNFD    VY+ +   G++P+  TY
Sbjct: 902  RDVELMIAEMEGA---GFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTY 958

Query: 309  NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
            N L+    R+ RP +  T+  EM   GL+P   +Y SLL A  +A   E    ++ EM+ 
Sbjct: 959  NTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQLFEEMRS 1018

Query: 369  KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            K  QL+ ++Y+ ++ +  + G   +A  +   MK  +  +P   T   ++T     G+  
Sbjct: 1019 KSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKE-DGIEPTIATMHILMTSYGTAGQPH 1077

Query: 429  EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
            EAE + N +  +  E +    +++   Y K    D  ++ L  +   G+ PD +   C +
Sbjct: 1078 EAENVLNSLKSSSLEVSTLPYSTVFDAYLKNGDYDLGIKKLLEMKRDGVEPDHQVWTCFI 1137

Query: 489  NVMTQTPKEELGKLVECVEKSNSKLGY--VVKLLLEEQDIEGDFKKEATELFNSISKDVK 546
               +   +     L+    KS    G+   ++LL E             E   ++     
Sbjct: 1138 RAASLCEQTADAILLL---KSLQDCGFDLPIRLLTERTPSLLSEIANYLEELEALEDSAA 1194

Query: 547  KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR-SPTQWSLHLKSLSLGAALTA 605
              + N + DL         A ++ +L +   +Y D   R +   W    + LS GAAL  
Sbjct: 1195 LNFVNAVEDLLWAFECRATASRIFQLAVERSIYRDNVFRVAQKDWGADFRKLSAGAALVG 1254

Query: 606  LHIWINDLSKA-LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 664
            L +W++ +  A L+   E P  + + TG G  +Y+   L     ++L E+ +PF     +
Sbjct: 1255 LTLWLDHMQDASLQGSPESPKSVVLVTGEG--EYNMVSLRKTIRAYLLEMGSPFLPCRAR 1312

Query: 665  VGWFLTTEAAAKSWLE 680
             G F+    + K WL+
Sbjct: 1313 SGRFVVKAYSLKMWLK 1328



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/437 (22%), Positives = 199/437 (45%), Gaps = 22/437 (5%)

Query: 109 LDSCSATEDDVFSVLRCLGD-------DFLE----------QDCVIILNNMTNPDTAALA 151
           LD   AT D+V  V+R +G+       D  E          +   ++L  +      ++A
Sbjct: 148 LDGARATPDEVAFVVRAVGESSWRRALDAFEWLARSTAPASRAVAVVLGVLGRARQDSIA 207

Query: 152 LTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
              F         V ++N  M V+ +    D A +L D M DRG+ PD V+F+TLI+   
Sbjct: 208 EEVFLRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARS 267

Query: 212 MNN--LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
            +       A++    +   G  PD +TY+++I A  ++ N+E A  +++     + R D
Sbjct: 268 KSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPD 327

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
              ++ ++ ++G  G  +    ++ E+   G  P+ +TYN+LL    +     +V+   +
Sbjct: 328 LWTYNAMVSVHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCE 387

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           E+   G   N  TY +++  YG+    +  + +Y EM+  G       Y  ++     + 
Sbjct: 388 ELVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMD 447

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
              EA ++ EDM  +   +P    FS++I   +  G+ ++AE  F+ M+ +G +P+    
Sbjct: 448 KIAEAGKVLEDMADA-GLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAY 506

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE- 507
             ++  + ++  T+ ++R    +      PDD     LL  + +  K EE+ ++++ +E 
Sbjct: 507 LVMLDVFARSGETEKMLRLYRTMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEIIQDMEL 566

Query: 508 KSNSKLGYVVKLLLEEQ 524
                LG +  +L++ +
Sbjct: 567 LCQMSLGVISTILIKAR 583



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 188/399 (47%), Gaps = 15/399 (3%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDT--------AALALTYFTNKLKASKEVILY 168
           DD   +L  + D  ++ D ++  N + N  +         AL L +   +     +VI Y
Sbjct: 238 DDARQLLDTMHDRGIDPD-LVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITY 296

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +    +  +L+ A  +F++M+    +PD  T++ ++S         +A   F  +  
Sbjct: 297 NTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFGELVE 356

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  PDA+TY+S++ A+ + GNV+      +      ++ +   ++T+I +YG  G  D 
Sbjct: 357 KGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYGKMGRLDL 416

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            + +Y+EM+A+G  P+ +TY  ++D++G+  +  +   + ++M D GL P    +++L+ 
Sbjct: 417 AVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPTLVAFSALIC 476

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           AY +     D    +  M   G++     Y  +L + A  G T++   ++  M  ++N +
Sbjct: 477 AYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKMLRLYRTMM-NDNYR 535

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD   +  ++   +   K  E E +  +M E   + +L V+++++    KA+      + 
Sbjct: 536 PDDDMYQVLLVALAKEDKCEEIEEIIQDM-ELLCQMSLGVISTILI---KARCVSQGGKL 591

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECV 506
           L +    G  PD +    ++N    T K E G  L+EC+
Sbjct: 592 LKKACLQGYKPDAKSLWSIMNAYVMTEKHEEGLSLLECI 630



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 126/313 (40%), Gaps = 38/313 (12%)

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           +  LI+C     L ++A + F  M   G +     Y S+I  Y + G  E A GL D A 
Sbjct: 678 YEHLITCLVEAELFSEACQVFCDMQFIGIEASKNIYESIISTYCKLGFPETAHGLMDDAL 737

Query: 263 NEK---------------------WR--------------IDPNAFSTLIKLYGTAGNFD 287
                                   W+              ID   ++ LI  Y  +G ++
Sbjct: 738 QSGIPLNILSCRVIIIEAYGNIKLWQQAEILVKGLRQASGIDRRIWNALIHAYAESGLYE 797

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V++ M   G  P + + N ++  +    R  ++  +  E+ D     + +T   +L
Sbjct: 798 KARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVGELQDMDFKISKSTVLLML 857

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSEN 406
            A+ +A    + + +Y  MK  G   ++ LY ++ + +C    + D    I E       
Sbjct: 858 DAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAE--MEGAG 915

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            +PD   F+S++ + +  G       ++  +LEAG EP+     +LI  Y ++ R ++  
Sbjct: 916 FKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGF 975

Query: 467 RALNRLPELGITP 479
             LN + + G+TP
Sbjct: 976 TLLNEMGKRGLTP 988


>gi|410110129|gb|AFV61144.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           pusilla]
          Length = 381

 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 39  DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVF 98

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 99  SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 156

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 157 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 216

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 217 TYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVXYERAGLIAHAKRLLHEL 276

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 277 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKK 331

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 332 YANVVEVFDKMRGLGYFPDSNVIAVVLN 359



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 140/286 (48%), Gaps = 1/286 (0%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V  D V +S LI  +R     +KA+  F R+   G  PD + Y++MI+ +G+A     A 
Sbjct: 1   VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 60

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L    +      +  ++STL+ +Y     F   L+V+ EM+ I    ++ T N ++D  
Sbjct: 61  SLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 120

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           G+     +   ++  M   G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V
Sbjct: 121 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 180

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YN+++ +       ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F 
Sbjct: 181 VTYNSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 239

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           ++   G E +  +  ++I  Y +A       R L+ L      P D
Sbjct: 240 KLRSTGVEIDQILFQTMIVXYERAGLIAHAKRLLHELKRPDNIPRD 285



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 164 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 223

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI  Y RAG +  A     R  +E  R 
Sbjct: 224 IWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVXYERAGLIAHA----KRLLHELKRP 279

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 280 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVF 339

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+ +  +    VY EM+E G
Sbjct: 340 DKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQEVG 381



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 130/278 (46%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 114 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 173

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 174 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 231

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 232 DRAAMLFQKLRSTGVEIDQILFQTMIVXYERAGLIAHAKRLLHELKRPDNIPR-DTAIHI 290

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 291 LAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVFDKMRGL-G 346

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   +    + +  GK+ E   A  ++ EM E G
Sbjct: 347 YFPDSNVIA---VVLNAYGKLQEFDKANDVYMEMQEVG 381


>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
 gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
          Length = 593

 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 161/347 (46%), Gaps = 3/347 (0%)

Query: 126 LGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAE 185
           L DD +     + LN    P         + +  +   ++I YN+ +  + + R L+KAE
Sbjct: 128 LWDDIVNVAVQLRLNRQWEPIITVCEWILYRSSFRP--DIICYNLLIDAYGQKRQLNKAE 185

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
            ++  +L+    P   T++ L+     +   ++A      M   G  P A  Y++ +D  
Sbjct: 186 SIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRAEGVISEMQKNGLPPTATVYNAYLDGL 245

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
            +A   E A  +Y R + E+ R +   ++ +I +YG A      L V+ EMK IG KPN+
Sbjct: 246 LKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKAKQPMSSLKVFNEMKTIGCKPNI 305

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
            TY  L++   R     + + +++EM   G  P+   Y +L+ AY RA   +    ++  
Sbjct: 306 CTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSL 365

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M+  G +     YN L+      G   EA   F+++K  +  +P   +   +++  +  G
Sbjct: 366 MEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELK-QQGMRPTMKSHMLLLSAHAKSG 424

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
            V+  E +  ++ ++G  P+ F L +++  YG+A R DD+ R L  +
Sbjct: 425 NVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAM 471



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 128/280 (45%), Gaps = 8/280 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +  Y   +  F +    +KAE +F++M   G +PD   ++ L+       LP  A E F 
Sbjct: 305 ICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFS 364

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   GC+PD  +Y+ ++DAYGRAG  + A   +   + +  R    +   L+  +  +G
Sbjct: 365 LMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKSG 424

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM-------TDNGLS 337
           N   C  V  ++   G++P+    N +L+  GRA R   ++ +   M          G +
Sbjct: 425 NVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAMERGGDDDAGGGAA 484

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P+ +TY  L+  YGRA Y +   + +R +  +G+   V  + + +   A         EI
Sbjct: 485 PDTSTYNVLVNVYGRAGYLDRMEAAFRALAARGLAADVVTWTSRIGAYARKKEYGRCLEI 544

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           FE+M  +  C PD+ T   ++  CS   +V +  A+   M
Sbjct: 545 FEEMVDA-GCYPDAGTAKVLLAACSDERQVEQVTAIVRSM 583


>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 805

 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 175/395 (44%), Gaps = 19/395 (4%)

Query: 102 LVKLAADLDSCSATEDDVFS---VLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNK 158
           +V L AD+ + +  E D F+   V+   G D L  + V    ++     A          
Sbjct: 238 VVALLADMRA-AGVEPDGFTASTVIAAAGRDGLVDEAVAFFEDLKARGHAPC-------- 288

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
                 V+ YN  ++VF K  +  +A R+  +M D G KPD VT++ L           +
Sbjct: 289 ------VVTYNALLQVFGKAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARAGFYQE 342

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A +  + M   G  P+  TY++++ AYG AG V+ A  L+DR +   +    N ++ ++ 
Sbjct: 343 AAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLG 402

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
           + G    F   L +  EM   G  PN +T+N LL   G+      V  + + M    +  
Sbjct: 403 MLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGKRGMESYVTRVLEGMKSCKVEL 462

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
             +TY +L+ AYGR     +   +Y EM   G    +T YN LL + +  G    A  I 
Sbjct: 463 CRDTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIV 522

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
             MK SE  +P+  ++S ++   +  G  +  EA+  E+ +    P+  +L +L+    K
Sbjct: 523 SKMK-SEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYQGNIFPSWVILRTLVIANFK 581

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
            +R + + RA   +   G  PD      +L++  +
Sbjct: 582 CRRLEGIERAFQEVKARGHKPDLVILNSMLSIYAK 616



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 166/385 (43%), Gaps = 28/385 (7%)

Query: 122 VLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKA-SKE---------------- 164
           V+R LG +        +L+ M  P  A L +  +T  L A S+E                
Sbjct: 153 VVRALGREGRHDAVCALLDEMPLPPGARLDVRAYTTVLHALSREGRYERALRLFDELRRE 212

Query: 165 -----VILYNVTMKVF-RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
                 + YNV + V+ R  R   +   L  DM   GV+PD  T ST+I+ A  + L ++
Sbjct: 213 GVAPTRVTYNVVLDVYGRMGRSWPRVVALLADMRAAGVEPDGFTASTVIAAAGRDGLVDE 272

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           AV +FE + + G  P  +TY++++  +G+AGN   A  +     +   + D   ++ L  
Sbjct: 273 AVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLREMEDAGCKPDAVTYNELAG 332

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            Y  AG +       + M   G+ PN  TYN ++   G A +  +   ++  M  NG  P
Sbjct: 333 SYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGKVDEALALFDRMKKNGFIP 392

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
             NTY  +L   G+       L +  EM   G   +   +NTLLA+C   G       + 
Sbjct: 393 YTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGKRGMESYVTRVL 452

Query: 399 EDMKSS--ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           E MKS   E C+    T++++I      G  + A  M++EM  AGF P L    +L+   
Sbjct: 453 EGMKSCKVELCRD---TYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVL 509

Query: 457 GKAQRTDDVVRALNRLPELGITPDD 481
            +          ++++   G  P+D
Sbjct: 510 SRQGDWTAARSIVSKMKSEGFKPND 534



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 140/305 (45%), Gaps = 1/305 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  M  +     +D+A  LFD M   G  P   T++ ++      +     +E    M 
Sbjct: 362 YNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMS 421

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P+ +T+++++   G+ G       + +  ++ K  +  + ++TLI  YG  G+  
Sbjct: 422 RSGCTPNRVTWNTLLAVCGKRGMESYVTRVLEGMKSCKVELCRDTYNTLICAYGRCGSRA 481

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +Y+EM A G  P + TYN LL+ + R       ++I  +M   G  PN  +Y+ LL
Sbjct: 482 NAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPNDMSYSLLL 541

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           + + +        ++ +E+ +  +  S  +  TL+         +     F+++K+  + 
Sbjct: 542 QCHAKGGNAAGIEAIEKEVYQGNIFPSWVILRTLVIANFKCRRLEGIERAFQEVKARGH- 600

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD    +SM++I +  G  S+A  MF  + + G  P+L    SL+  Y K+    +  +
Sbjct: 601 KPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYNSLMDMYAKSNEPWEAEK 660

Query: 468 ALNRL 472
            LNRL
Sbjct: 661 ILNRL 665



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 10/204 (4%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VIL  + +  F KCR L+  ER F ++  RG KPD V  ++++S    N L +KA+E FE
Sbjct: 570 VILRTLVIANF-KCRRLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFE 628

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK---------WRIDPNAFST 275
            +   G  PD +TY+S++D Y ++     A  + +R R+ +          + D  +++T
Sbjct: 629 SIEQLGLSPDLITYNSLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQLKPDVVSYNT 688

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           +I  +   G       V  EM A GV P +ITY+ L+      +   + + +   M    
Sbjct: 689 VINGFCKEGLIKEAQRVLSEMIADGVAPCVITYHTLVGGYASREMFAEAREVVGYMIQRK 748

Query: 336 LSPNWNTYASLLRAYGRARYGEDT 359
           L P   TY  ++ +Y RA+  ED 
Sbjct: 749 LKPMELTYRRVVDSYCRAKRYEDA 772



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 124/266 (46%), Gaps = 12/266 (4%)

Query: 202 TFSTLISCA--RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD 259
           T++TLI CA  R  +  N A + ++ M + G  P   TY+++++   R G+   A  +  
Sbjct: 466 TYNTLI-CAYGRCGSRAN-AFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVS 523

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
           + ++E ++ +  ++S L++ +   GN  G   + +E+    + P+ +    L+    + +
Sbjct: 524 KMKSEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYQGNIFPSWVILRTLVIANFKCR 583

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
           R   ++  ++E+   G  P+     S+L  Y +       + ++  +++ G+   +  YN
Sbjct: 584 RLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYN 643

Query: 380 TLLAMCADVGYTDEAFEIFEDMK--------SSENCQPDSWTFSSMITICSCRGKVSEAE 431
           +L+ M A      EA +I   ++          +  +PD  +++++I      G + EA+
Sbjct: 644 SLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQLKPDVVSYNTVINGFCKEGLIKEAQ 703

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYG 457
            + +EM+  G  P +    +L+  Y 
Sbjct: 704 RVLSEMIADGVAPCVITYHTLVGGYA 729



 Score = 42.7 bits (99), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 44/91 (48%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +  F K   + +A+R+  +M+  GV P  +T+ TL+       +  +A E  
Sbjct: 682 DVVSYNTVINGFCKEGLIKEAQRVLSEMIADGVAPCVITYHTLVGGYASREMFAEAREVV 741

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
             M      P  LTY  ++D+Y RA   E A
Sbjct: 742 GYMIQRKLKPMELTYRRVVDSYCRAKRYEDA 772


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 181/372 (48%), Gaps = 9/372 (2%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I++N        +LAL      +K   E  ++  N  +  F     +  A  L   M++ 
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G +PD+ TF+TLI     +N  ++AV   +RM   GC PD +TY  +++   + G++++A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240

Query: 255 FGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
             L  +   E+ +I+P    ++T+I       N +  LN++ EM   G++PN++TYN+L+
Sbjct: 241 LSLLKKM--EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 298

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
             +    R      +  +M +  ++PN  T+++L+ A+ +     +   +Y EM ++ + 
Sbjct: 299 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 358

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAE 431
             +  Y++L+         DEA  +FE M  S++C P+  T++++I   C  + +V E  
Sbjct: 359 PDIFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLIKGFCKAK-RVDEGM 416

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            +F EM + G   N    T+LI  + +A+  D+      ++   G+ PD      LL+ +
Sbjct: 417 ELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGL 476

Query: 492 TQTPKEELGKLV 503
               K E   +V
Sbjct: 477 CNNGKVETALVV 488



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 173/348 (49%), Gaps = 7/348 (2%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I++N +       LAL+      +   E  V++YN  +      ++++ A  LF +M ++
Sbjct: 226 IVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNK 285

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G++P+ VT+++LI C       + A      M     +P+ +T+S++IDA+ + G +  A
Sbjct: 286 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 345

Query: 255 FGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
             LYD     K  IDP+ F  S+LI  +      D   +++E M +    PN++TYN L+
Sbjct: 346 EKLYDEM--IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 403

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
               +AKR  +   +++EM+  GL  N  TY +L+  + +AR  ++   V+++M   G+ 
Sbjct: 404 KGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVL 463

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
             +  Y+ LL    + G  + A  +FE ++ S+  +PD +T++ MI      GKV +   
Sbjct: 464 PDIMTYSILLDGLCNNGKVETALVVFEYLQRSK-MEPDIYTYNIMIEGMCKAGKVEDGWD 522

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +F  +   G +PN+   T+++  + +    ++       + E G  PD
Sbjct: 523 LFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPD 570



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 152/323 (47%), Gaps = 7/323 (2%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           L  S  +  Y++ +  F +   L  A  +   M+  G +PD VT ++L++     N  + 
Sbjct: 110 LGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISD 169

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           AV    +M   G  PD+ T++++I    R      A  L DR   +  + D   +  ++ 
Sbjct: 170 AVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVN 229

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
                G+ D  L++ ++M+   ++P ++ YN ++D +   K       ++ EM + G+ P
Sbjct: 230 GLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRP 289

Query: 339 NWNTYASLLRA---YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           N  TY SL+R    YGR     D   +  +M E+ +  +V  ++ L+      G   EA 
Sbjct: 290 NVVTYNSLIRCLCNYGRW---SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 346

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           +++++M    +  PD +T+SS+I       ++ EA+ MF  M+     PN+    +LI+ 
Sbjct: 347 KLYDEM-IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG 405

Query: 456 YGKAQRTDDVVRALNRLPELGIT 478
           + KA+R D+ +     + + G+ 
Sbjct: 406 FCKAKRVDEGMELFREMSQRGLV 428



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 159/344 (46%), Gaps = 12/344 (3%)

Query: 151 ALTYFTNKLKASK--EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+  F + +K+     ++ ++  +    K    D    L + M + G+  +  T+S LI+
Sbjct: 65  AVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILIN 124

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           C    +  + A+    +M   G +PD +T +S+++ +     +  A  L  +     ++ 
Sbjct: 125 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQP 184

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   F+TLI            + + + M   G +P+++TY  +++ + +        ++ 
Sbjct: 185 DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLL 244

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           K+M    + P    Y +++ A    +   D L+++ EM  KG++ +V  YN+L+    + 
Sbjct: 245 KKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNY 304

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G   +A  +  DM   +   P+  TFS++I      GK+ EAE +++EM++   +P++F 
Sbjct: 305 GRWSDASRLLSDMIERK-INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 363

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            +SLI  +    R D+       + EL I+ D     C  NV+T
Sbjct: 364 YSSLINGFCMHDRLDEA----KHMFELMISKD-----CFPNVVT 398



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 130/282 (46%), Gaps = 41/282 (14%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K +  V+ ++  +  F K   L +AE+L+D+M+ R + PD  T+S+LI+   M++  ++A
Sbjct: 321 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 380

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              FE M S  C P+ +TY+++I  + +A  V+    L+          +   ++TLI  
Sbjct: 381 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHG 440

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM------------------------ 315
           +  A   D    V+++M + GV P+++TY+ LLD +                        
Sbjct: 441 FFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPD 500

Query: 316 --------------GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
                         G+ +  W    ++  ++  G+ PN  TY +++  + R    E+  +
Sbjct: 501 IYTYNIMIEGMCKAGKVEDGWD---LFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADA 557

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           ++REMKE+G       YNTL+      G    + E+  +M+S
Sbjct: 558 LFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 599



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 2/116 (1%)

Query: 137 IILNNMTNPDTAALALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+L+ + N      AL  F    + K   ++  YN+ ++   K   ++    LF  +  +
Sbjct: 471 ILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 530

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           GVKP+ VT++T++S      L  +A   F  M   G  PD+ TY+++I A+ R G+
Sbjct: 531 GVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGD 586


>gi|255661184|gb|ACU25761.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 426

 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 174/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 63  AISIFS-RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLL 121

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 122 TMYVENKKFLEALSVFSEMREJKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 179

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++   
Sbjct: 240 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAY 299

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG   +
Sbjct: 300 ERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKD 354

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 355 ITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 398



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    +      +  ++STL+ +Y     F 
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ J    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFSEMREJKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ S   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-SRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 319 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ +  A +L AYG+ +  +    VY EM+E G
Sbjct: 379 DKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 420


>gi|255661176|gb|ACU25757.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 426

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 173/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF   +   +A  L  +M   GV P+  ++STL+
Sbjct: 63  AISIFS-RLKRSGFMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTLL 121

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 179

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++   
Sbjct: 240 NLIQEMQHRGIEPNSITYSTIISIWGKVGKLDRAAVLFQKLRSSGVEIDQVLYQTMIVAY 299

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG   +
Sbjct: 300 ERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKD 354

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 355 ITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 147/314 (46%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSGFMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+     
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-HRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAVLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 137/288 (47%), Gaps = 1/288 (0%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +  
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL
Sbjct: 62  KAISIFSRLKRSGFMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTLL 121

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                 K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 241 LIQEMQHRGIEPNSITYSTIISIWGKVGKLDRAAVLFQKLRSSGVEID 288



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 6/223 (2%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQHRGIEPNSITYSTIIS 262

Query: 209 C-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
              ++  L   AV  F+++ S G + D + Y +MI AY RAG V  A     R  +E  R
Sbjct: 263 IWGKVGKLDRAAV-LFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHA----KRLLHELKR 317

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  +
Sbjct: 318 PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEV 377

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           + +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 378 FDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420


>gi|410110085|gb|AFV61122.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           fucata]
          Length = 382

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 174/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 24  AISIFS-RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLL 82

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 83  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 140

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++   
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAY 260

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG   +
Sbjct: 261 ERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKD 315

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 316 ITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 359



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 141/286 (49%), Gaps = 1/286 (0%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V  D V +S LI  +R     +KA+  F R+   G  PD + Y++MI+ +G+A     A 
Sbjct: 1   VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 60

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L    +      +  ++STL+ +Y     F   L+V+ EM+ I    ++ T N ++D  
Sbjct: 61  SLIGEMKAAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 120

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           G+     +   ++  M   G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V
Sbjct: 121 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 180

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YN+++ +       ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F 
Sbjct: 181 VTYNSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 239

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           ++  +G E +  +  ++I  Y +A       R L+ L      P D
Sbjct: 240 KLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRD 285



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 164 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 223

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 224 IWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 279

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 280 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVF 339

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ +  A +L AYG+ +  +    VY EM+E G
Sbjct: 340 DKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 381



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 130/278 (46%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 114 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 173

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 174 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 231

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ G++ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 232 DRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 290

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 291 LAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGL-G 346

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   +    + +  GK+ E   A  ++ EM E G
Sbjct: 347 YFPDSDVIA---IVLNAYGKLQEFDKANDVYMEMQEVG 381


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 175/349 (50%), Gaps = 9/349 (2%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+++ +       +A + FT   +A  + +++ YN  +    K   LD+   +F+ M D 
Sbjct: 260 IMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDA 319

Query: 195 GVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
              PD +T++ LI+C  +   +P KA E+   M + G  P+ +TYS+ IDA+ + G ++ 
Sbjct: 320 DCDPDVITYNALINCFCKFERMP-KAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQE 378

Query: 254 AFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           A   +   R  +  + PN F  ++LI     AGN    L + EE+   G+K N++TY  L
Sbjct: 379 AIKFFVDMR--RVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTAL 436

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           LD +    R  + + +++ M + G++PN  TY +L+  + +A+  E    + +EMKEK +
Sbjct: 437 LDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCI 496

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
           +  + LY T+L    +    +EA  +  ++K S     ++  +++++      G+ +EA 
Sbjct: 497 KPDLLLYGTILWGLCNESRLEEAKLLIGEIKES-GINTNAVIYTTLMDAYFKSGQATEAL 555

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +  EML+ G         +LI    K+    + +    R+ E+G+ P+
Sbjct: 556 TLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPN 604



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 108/463 (23%), Positives = 185/463 (39%), Gaps = 96/463 (20%)

Query: 131 LEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDD 190
           L  +C+ I   M + D                 +VI YN  +  F K   + KA     +
Sbjct: 305 LLDECICIFEQMKDAD--------------CDPDVITYNALINCFCKFERMPKAFEFLHE 350

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           M   G+KP+ VT+ST I       +  +A+++F  M      P+  TY+S+IDA  +AGN
Sbjct: 351 MKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGN 410

Query: 251 VEMAF-----------------------GLYDRAR----NEKWR------IDPN--AFST 275
           +  A                        GL +  R     E +R      + PN   ++ 
Sbjct: 411 LAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTA 470

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           L+  +  A   +   ++ +EMK   +KP+++ Y  +L  +    R  + K +  E+ ++G
Sbjct: 471 LVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESG 530

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           ++ N   Y +L+ AY ++    + L++  EM + G+  +   Y  L+      G   EA 
Sbjct: 531 INTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAM 590

Query: 396 EIFEDMKS------------------SENC----------------QPDSWTFSSMITIC 421
             F  M                      NC                 PD   ++++I   
Sbjct: 591 HHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGN 650

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GIT 478
              G + EA  + + M+E G E +L   T+LI  +G +  +  V +A N L E+   G+ 
Sbjct: 651 MKHGNLQEALNLRDRMIEIGMELDLHAYTALI--WGLSH-SGQVQKARNLLDEMIGKGVL 707

Query: 479 PDDRFCGCLLNVMTQTPKEELGKLVECVEKSN--SKLGYVVKL 519
           PD+    CL+          LGK+ E +E  N  +K G +  L
Sbjct: 708 PDEVVYMCLIK-----KYYALGKVDEALELQNEMAKRGMITGL 745



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 119/264 (45%), Gaps = 10/264 (3%)

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           C P    + ++  A    G +E A   + + R  +    P + + L+      G  D   
Sbjct: 181 CVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSR 240

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
             +++M A G+K ++ TYN ++D + +       ++++ +M + G +P+  TY SL+  +
Sbjct: 241 KFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGH 300

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
           G+    ++ + ++ +MK+      V  YN L+          +AFE   +MK++   +P+
Sbjct: 301 GKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKAN-GLKPN 359

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
             T+S+ I      G + EA   F +M      PN F  TSLI    KA    + ++ + 
Sbjct: 360 VVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVE 419

Query: 471 RLPELGITPDDRFCGCLLNVMTQT 494
            + + GI          LNV+T T
Sbjct: 420 EILQAGIK---------LNVVTYT 434



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 74/164 (45%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           + +A   F  M + G++P+   ++ L+     NN    A + F+ M   G  PD + Y++
Sbjct: 586 VQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTA 645

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +ID   + GN++ A  L DR       +D +A++ LI     +G      N+ +EM   G
Sbjct: 646 LIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKG 705

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           V P+ + Y  L+       +  +   +  EM   G+    + +A
Sbjct: 706 VLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMITGLSDHA 749


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 191/426 (44%), Gaps = 39/426 (9%)

Query: 154 YFTNKLK---ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA 210
           Y  N+++    S +    N+ +        + +   +   +L RG  PD VT++TLI   
Sbjct: 117 YLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGL 176

Query: 211 RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP 270
            M +  +KA   F RM   GC P+A+TY +++    R GN+ +A  L+    N+      
Sbjct: 177 CMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDS----- 231

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
                   LYG                 I  KP +I+Y+ ++D + + +R  + + +++E
Sbjct: 232 -------SLYG-----------------INFKPVVISYSIIIDALCKDRREDEARDLFEE 267

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           M   G++P   +Y SL+  +      E+   ++ EM  +G+Q +V  +N L+ +    G 
Sbjct: 268 MKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGK 327

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
             EA ++ E M       P+  T++S+I      G ++ A  +F  M   G EP++   T
Sbjct: 328 VIEAKDLLEVM-IQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYT 386

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 510
            LI  Y K  + ++ ++  N + ++G  PD +  G LL  + Q  K    K +  V K  
Sbjct: 387 VLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVY 446

Query: 511 SKLG--YVVKLLLEEQDIEGDFKKEATELFNSI-SKDVK-KAYC-NCLIDLCVNLNLLEN 565
              G  Y+  + L      G    EA ELFN + S ++K    C NCLID       LE 
Sbjct: 447 GIPGDLYIYGIFLNGLCKNGCL-FEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLET 505

Query: 566 ACKLLE 571
           A +L E
Sbjct: 506 AWELFE 511



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 148/299 (49%), Gaps = 1/299 (0%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           ++A+RLF++M+++GV+P+ VTF+ LI          +A +  E M   G  P+ LTY+S+
Sbjct: 294 EEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSL 353

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I+ +   G++  A  L+    ++    D   ++ LI  Y      +  + +Y  M  +G 
Sbjct: 354 IEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGK 413

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           +P++ TY  LL  + +  +    K ++  M   G+  +   Y   L    +     + + 
Sbjct: 414 RPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAME 473

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           ++ ++K   ++L +  +N L+      G  + A+E+FE +   E  QPD  T++ MI   
Sbjct: 474 LFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEE-LQPDVVTYNIMIHEF 532

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              G+V +A  +F +M + G  P+     +LI+ + ++++ + VV  L+ + +  ++ D
Sbjct: 533 CRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVSLD 591



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 106/214 (49%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI Y V +  + K   +++A +L++ ML  G +PD  T+  L++          A + F
Sbjct: 381 DVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLF 440

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M  +G   D   Y   ++   + G +  A  L+++ ++   ++D   F+ LI     A
Sbjct: 441 GVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKA 500

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +    ++E++    ++P+++TYN ++    R  +  +   ++++M  NG +P+  TY
Sbjct: 501 GKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITY 560

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
           A+L+R +  ++  E  + +   M ++ + L V +
Sbjct: 561 ATLIRGFFESKKLEKVVELLHMMVQRDVSLDVNI 594



 Score = 43.9 bits (102), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNE 436
           +  LL+  A + +  + F ++  M+ S    PD  T + ++  C C   +V E  A+   
Sbjct: 99  FTHLLSGLAKIKHYSQVFYLYNQMRLS-GISPDCCTLNILLN-CLCNVNRVGEGLAVMAG 156

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           +L  G+ P++   T+LI+      R         R+ +LG TP+    G L+  + +T
Sbjct: 157 ILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRT 214


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 158/318 (49%), Gaps = 1/318 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++Y + +  F +   + +A R+ D+M+  G  PD VT++TL++        + A E    
Sbjct: 335 VIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNE 394

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  PD  T++++I  Y R GN+E A   +D   +++ R D   ++TLI      G+
Sbjct: 395 MKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGD 454

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 ++++M +  + PN +TY+ L+D+     +         EM + G+ PN  TY S
Sbjct: 455 LGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNS 514

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +++ Y R+           +M+   +   +  YNTL+      G   EAF + + M++ E
Sbjct: 515 IIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMEN-E 573

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           N QPD+ T++ +I+  S  G + EA+ ++ +M   G EP+ +   S+I  +  A  +   
Sbjct: 574 NVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKS 633

Query: 466 VRALNRLPELGITPDDRF 483
            +  + + + G+ PDD+F
Sbjct: 634 FQLHDEMLQKGLAPDDKF 651



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 163/353 (46%), Gaps = 38/353 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +NV +    +  D++ A  L D M+ +G+KP  VT+++++     N   +KA E F
Sbjct: 193 DVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVF 252

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M + G  PD  +++ +I  + RAG +E A   Y   R  +   D  +FS LI L+   
Sbjct: 253 RAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRR 312

Query: 284 GNFDG-----------------------------------CLNVYEEMKAIGVKPNMITY 308
           G  D                                     L V +EM A G  P+++TY
Sbjct: 313 GEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTY 372

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N LL+ + + +R    + +  EM + G+ P+  T+ +L+  Y R    E  L  +  + +
Sbjct: 373 NTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISD 432

Query: 369 KGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
           + ++  +  YNTL+  MC   G   +A E+++DM S E   P+  T+S +I     +G+V
Sbjct: 433 QRLRPDIVTYNTLIDGMCRQ-GDLGKANELWDDMHSRE-IFPNHVTYSILIDSHCEKGQV 490

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             A A  +EM+  G  PN+    S+I+ Y ++       + L ++    + PD
Sbjct: 491 DNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPD 543



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 2/223 (0%)

Query: 151 ALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL +F   +  +   +++ YN  +    +  DL KA  L+DDM  R + P++VT+S LI 
Sbjct: 423 ALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILID 482

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   + A  + + M + G  P+ +TY+S+I  Y R+GNV        + R++K   
Sbjct: 483 SHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMP 542

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   ++TLI  Y   G      N+ + M+   V+P+ +TYN ++          +   +Y
Sbjct: 543 DLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVY 602

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           K+M   G+ P+  TY S++  +  A   + +  ++ EM +KG+
Sbjct: 603 KKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGL 645



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 90/392 (22%), Positives = 160/392 (40%), Gaps = 14/392 (3%)

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           P    F  LI     +  P +A E F  +        A   ++++ A  RAG   +    
Sbjct: 87  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPIPAAASNALLAALSRAGWPHLTADA 146

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
           Y    +    ++    + ++  Y     F     V  EM+   V P+++T+N ++D   R
Sbjct: 147 YRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFR 206

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
           A        +   M   G+ P   TY S+L+   R    +    V+R M   G+   V  
Sbjct: 207 AGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRS 266

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           +N L+      G  +EA   +++M+      PD  +FS +I + + RG++  A     EM
Sbjct: 267 FNMLIGGFCRAGELEEALRFYKEMR-GRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREM 325

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK- 496
            E G  P+  + T +I  + +A    + +R  + +   G  PD      LLN + +  + 
Sbjct: 326 REFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRL 385

Query: 497 ---EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCL 553
              EEL  L E  E+           L+     +G+ +K A + F++IS    +      
Sbjct: 386 SDAEEL--LNEMKERGVPPDLCTFTTLIHGYCRDGNIEK-ALQFFDTISDQRLRP----- 437

Query: 554 IDLCVNLNLLENACKLLELGLTLEVYTDIQSR 585
            D+     L++  C+  +LG   E++ D+ SR
Sbjct: 438 -DIVTYNTLIDGMCRQGDLGKANELWDDMHSR 468


>gi|410110133|gb|AFV61146.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rhodocnemis]
          Length = 345

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 172/343 (50%), Gaps = 11/343 (3%)

Query: 151 ALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A++ F+   +L    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++
Sbjct: 6   AISIFSRLKRLGFMPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLT 65

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  I
Sbjct: 66  MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGI 123

Query: 269 DPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           +PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +   
Sbjct: 124 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANN 183

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++    
Sbjct: 184 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 243

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG   ++
Sbjct: 244 RAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDI 298

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
            V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 299 TVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 341



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 98/204 (48%), Gaps = 4/204 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  + ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 146 AIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 205

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 206 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 261

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 262 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVF 321

Query: 329 KEMTDNGLSPNWNTYASLLRAYGR 352
            +M   G  P+ +  A +L AYG+
Sbjct: 322 DKMRGLGYFPDSDVIAIVLNAYGK 345


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 168/376 (44%), Gaps = 39/376 (10%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +++YN  +    K  ++  AE + + +   G+KPD  T++++I     N   + A E F 
Sbjct: 228 LLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFN 287

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAF-----------------------GLYDRA 261
           RM   GC+P+A TYS++I+    +G V  A                         L D  
Sbjct: 288 RMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMG 347

Query: 262 RNE-KWRI---------DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           R E  W+I          PN + T   L          + ++  M   GV PN +TYN L
Sbjct: 348 RIEDAWKIFIDMKKKGCKPNVY-TYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNAL 406

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           ++ +           ++  M  +G  PN ++Y  L+R Y      E  +S+   M +   
Sbjct: 407 MNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRP 466

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
             ++  YN ++    D G TD A  + E MK++  CQPD W+++ +I+      K+  A 
Sbjct: 467 TPTLVTYNIIIKGYCDSGDTDVAIRVLELMKAN-GCQPDEWSYTELISGFCKISKMELAS 525

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            MFNEM++ G  PN    T+LI  Y K ++ D   R L R+   G  P+ +    L++ +
Sbjct: 526 GMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGL 585

Query: 492 TQ----TPKEELGKLV 503
           T+    +  EEL K++
Sbjct: 586 TKQNNFSGAEELCKVM 601



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 133/287 (46%), Gaps = 1/287 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  ++ +    D +KA  +  +ML     P  VT++ +I     +   + A+   E M 
Sbjct: 438 YNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMK 497

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + GC PD  +Y+ +I  + +   +E+A G+++   +     +   ++ LI  Y      D
Sbjct: 498 ANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLD 557

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + E MK  G +PN+ TYN L+  + +       + + K M +  +SP+  TY++++
Sbjct: 558 CAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVI 617

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
                       L ++ +M + G   ++  Y++L+      G  +EA E+F ++K  +  
Sbjct: 618 NGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELK-KQGL 676

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            PD  T+  MI +C   GKV  A     EM+ AG +P L     LI+
Sbjct: 677 IPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIK 723



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 143/334 (42%), Gaps = 33/334 (9%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           ++ +A    D    RG K    T++TL+      N+ +  ++ + ++   G  P+ L Y+
Sbjct: 173 EMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYN 232

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           S+I+A  + GNV  A  + ++      + D   ++++I  Y    + D    ++  M   
Sbjct: 233 SVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEE 292

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G +PN  TY+ L++ +  + R  +      EMT +G+ P  +T+ + + A       ED 
Sbjct: 293 GCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDA 352

Query: 360 LSVYREMKEKGMQLSVTLYNTLLA--------------MCAD------VGY--------- 390
             ++ +MK+KG + +V  Y +L++              M  D      V Y         
Sbjct: 353 WKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLME 412

Query: 391 ---TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
               D A  +F +M     C P++ +++ +I      G   +A +M   ML+    P L 
Sbjct: 413 NMEIDSALIVF-NMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLV 471

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
               +I+ Y  +  TD  +R L  +   G  PD+
Sbjct: 472 TYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDE 505



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/379 (20%), Positives = 146/379 (38%), Gaps = 58/379 (15%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +  F K   ++ A  +F++M+DRG+ P+ VT++ LIS    +   + A    ERM 
Sbjct: 508 YTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMK 567

Query: 228 SFGC-----------------------------------DPDALTYSSMIDAYGRAGNVE 252
             GC                                    PD +TYS++I+     G + 
Sbjct: 568 RSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIP 627

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
           +A  ++++        + + +S+LI+  G  G  +    ++ E+K  G+ P+ +TY  ++
Sbjct: 628 LALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMI 687

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA---------------------YG 351
           +    + +  +      EM + G  P   TY  L++                      + 
Sbjct: 688 EVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTSTFD 747

Query: 352 RARYGEDTLSVY-REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
                +D +SV   ++ E   +LS  LY+ LL+  +  G   EA  ++  M S   C P+
Sbjct: 748 DQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQC-PN 806

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
             T+   +       KV  A  +F  M +   E +L     LI    +  R  +      
Sbjct: 807 QDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFVFE 866

Query: 471 RLPELGITPDDRFCGCLLN 489
           ++    +  D+     L+N
Sbjct: 867 KMLSRALNADEIVWTILIN 885



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 110/278 (39%), Gaps = 23/278 (8%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S +V+ Y+  +        +  A  +F+ M+  G  P+  T+S+LI          +A
Sbjct: 605 KISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEA 664

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK- 278
            E F  +   G  PD +TY  MI+    +G V+ AF       N   +     +  LIK 
Sbjct: 665 EEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKG 724

Query: 279 -----LY---------GTAGNFDGCLNVYEEMKAIGVKPNMI-------TYNNLLDTMGR 317
                +Y          +   FD  +   + +  +  K   +        Y+ LL  + R
Sbjct: 725 LQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSR 784

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
           + R ++   +Y+ M      PN +TY   L +  RA   +  + V++ M ++  +L +T 
Sbjct: 785 SGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTG 844

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTF 414
           Y  L+     +    EA  +FE M S   N     WT 
Sbjct: 845 YKELICTLCQLHRRKEARFVFEKMLSRALNADEIVWTI 882



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 11/210 (5%)

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           +IK           LN  +     G K  + TY  LL  + +      V   Y ++   G
Sbjct: 164 MIKSCSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREG 223

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT---- 391
           L PN   Y S++ A  +     D  S+  ++ + GM+     Y +++     +GY     
Sbjct: 224 LQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMI-----LGYCRNRD 278

Query: 392 -DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
            D AFEIF  M   E C+P++ T+S++I      G+V+EA    +EM   G  P +   T
Sbjct: 279 LDSAFEIFNRM-DEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFT 337

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           + I       R +D  +    + + G  P+
Sbjct: 338 APIVALCDMGRIEDAWKIFIDMKKKGCKPN 367



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/291 (18%), Positives = 113/291 (38%), Gaps = 24/291 (8%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           ++N + N     LAL  F   +K      +  Y+  ++   +   +++AE +F ++  +G
Sbjct: 616 VINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQG 675

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY---------- 245
           + PD VT+  +I    M+   ++A ++   M + GC P   TY  +I             
Sbjct: 676 LIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLV 735

Query: 246 ------------GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
                        +  N ++   L  +     + +    +  L+     +G +    N+Y
Sbjct: 736 ALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLY 795

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
             M +    PN  TY + L ++ RA +      ++K M+D     +   Y  L+    + 
Sbjct: 796 RSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQL 855

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
              ++   V+ +M  + +     ++  L+      GY D   E    M+++
Sbjct: 856 HRRKEARFVFEKMLSRALNADEIVWTILINGLLGAGYKDLCMEFLHIMETN 906


>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
 gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
          Length = 384

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 156/333 (46%), Gaps = 5/333 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ILYN  +        L+ AE++ DDM    V  + VT++ LI             + F+ 
Sbjct: 54  ILYNCLVNGLVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQE 113

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P++ TY+++I  YGR G  + A  LYD         D + ++  I +YG  G 
Sbjct: 114 MKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGL 173

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT--IYKEMTDNGLSPNWNTY 343
            +    + +EM   GV P+ +TYN LLD    AK+ + VK   I +EMT+ G  PN  TY
Sbjct: 174 LEDMERLLDEMDTKGVPPDQVTYNTLLDVY--AKKSYFVKAHEILREMTEAGYRPNIWTY 231

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             +L +  + +   +   ++  +K KG+  ++  Y+ +L++    G   EA +++++M  
Sbjct: 232 NIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIE 291

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +  C P    +S +I      G   EA A F +M ++G  P+  + T+L+  YGKA R  
Sbjct: 292 A-GCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCR 350

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           +       + + G  PD    G L+       +
Sbjct: 351 EAELLYFEMTKEGFVPDGITYGILVRAFANAGR 383



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 167/349 (47%), Gaps = 2/349 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVF-RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A +L Y   K      V+ Y V +  + R+   LD A RL + M + G KPD + ++ L+
Sbjct: 1   ACSLFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLV 60

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    +     A +  + M       + +TY+++I  Y  AG ++    L+   +++   
Sbjct: 61  NGLVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGES 120

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            +   ++ LI+ YG  G F   L +Y+EM  +G   ++ TYN  +   G+      ++ +
Sbjct: 121 PNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERL 180

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
             EM   G+ P+  TY +LL  Y +  Y      + REM E G + ++  YN +L+    
Sbjct: 181 LDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARK 240

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
                EA ++FE++KS +   P+  T+S+M+++    G  +EA  +++EM+EAG  P + 
Sbjct: 241 EQSVAEATQLFENLKS-KGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCII 299

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
             + LI+ YG      + +     + + GI PD +    L++   +  +
Sbjct: 300 AYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGR 348



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 1/302 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S  ++ Y   +K +     L    +LF +M D+G  P++ T++ LI       L  +A
Sbjct: 83  KVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEA 142

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           +E ++ M   GC  D  TY+  I  YG+ G +E    L D    +    D   ++TL+ +
Sbjct: 143 LELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDV 202

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           Y     F     +  EM   G +PN+ TYN +L +  + +   +   +++ +   G+ PN
Sbjct: 203 YAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPN 262

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY+++L  YGR     +   ++ EM E G    +  Y+ L+      G   EA   F+
Sbjct: 263 IVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQ 322

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           DM+ S    PD+  +++++      G+  EAE ++ EM + GF P+      L++ +  A
Sbjct: 323 DMRKS-GIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRAFANA 381

Query: 460 QR 461
            R
Sbjct: 382 GR 383


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 144/317 (45%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I Y   +  F K   +D+A +L D ML +G +P  VT+ +++      ++ N+A E  
Sbjct: 212 DTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVI 271

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M   GC+P    ++S++  Y   G  E A+ +           D   +++LI L  + 
Sbjct: 272 AQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFST 331

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G      +V++ M   G  P+ +TY  ++    +         I + M  +G+ P+   Y
Sbjct: 332 GRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAY 391

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            SL+  Y +    +    VY  M   G++ +   +N L+      G TD AF +F++M  
Sbjct: 392 NSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLE 451

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            E   P   +++ +I      G+VSEA   F EM++ G  P     TSLI    KA R  
Sbjct: 452 KEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIP 511

Query: 464 DVVRALNRLPELGITPD 480
           +  + +  + +LG+ PD
Sbjct: 512 EAKKLVEDMVKLGVNPD 528



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 162/339 (47%), Gaps = 19/339 (5%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARM-----NNLPN 217
           ++ YN  +        +D+A + F+ M+D G +PD + F+TLI   C        + L N
Sbjct: 7   IVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLN 66

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +A++ F         PD   Y+S+I  Y +AG+++     Y RA   K  +D  +++T+I
Sbjct: 67  QALKRFR--------PDVFLYTSVIHGYCKAGDLDTG---YFRAVTPKASLDVISYTTVI 115

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           K    +   D    ++EE+K  G  PN++ Y  ++D + +A R       ++EM+ +   
Sbjct: 116 KGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCV 175

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P   TY  ++    +A+   D   V+ +M +KG       Y TL+   +     DEA ++
Sbjct: 176 PTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKL 235

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
             D+  ++  +P + T+ S++        ++EA+ +  +M E G EP LF+ TSL+  Y 
Sbjct: 236 L-DVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYL 294

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
              R ++  + L  +   G  PD      L++++  T +
Sbjct: 295 SKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGR 333



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 142/321 (44%), Gaps = 1/321 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           KAS +VI Y   +K     + +D+A  LF+++   G  P+ V ++ +I            
Sbjct: 103 KASLDVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDG 162

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           ++ FE M    C P   TY+ +ID   +A  +  A  ++++   +    D   ++TLI  
Sbjct: 163 LKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDG 222

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +  A   D    + + M   G +P  +TY +++    +     + K +  +M + G  P 
Sbjct: 223 FSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPG 282

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
              + SLL  Y      E+   V  EM  +G    V LY +L+ +    G   EA  +F+
Sbjct: 283 LFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFD 342

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
            M   + C PD+ T+ ++I   S  G V  A  +   M ++G  P+ F   SL+  Y K 
Sbjct: 343 SM-IEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKL 401

Query: 460 QRTDDVVRALNRLPELGITPD 480
           +R D      +R+   GI P+
Sbjct: 402 ERVDQAFGVYDRMVASGIKPN 422



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 141/276 (51%), Gaps = 8/276 (2%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAV 220
           + +VILY   + +      + +A  +FD M+++G  PD +T+ T+I + +++ N+   A 
Sbjct: 315 APDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNV-EAAG 373

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E  E M   G  PD   Y+S++D Y +   V+ AFG+YDR       I PNA +  + ++
Sbjct: 374 EILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASG--IKPNAVTFNVLMH 431

Query: 281 G--TAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           G    G  D   ++++EM +   V P +++Y  L+D +G+A R  +    ++EM D G+ 
Sbjct: 432 GLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGII 491

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P  +TY SL+ +  +A    +   +  +M + G+   V  Y+ L+    D    D A+++
Sbjct: 492 PECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDV 551

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           F++M     C P+  T+  +       G+  + EA+
Sbjct: 552 FQEMM-KRGCAPNEVTYKVLRRGFRAAGRALDLEAV 586



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 135/285 (47%), Gaps = 2/285 (0%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           ++A ++  +M  RG  PD + +++LI          +A   F+ M   GC PDALTY ++
Sbjct: 300 EEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTI 359

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I  + + GNVE A  + +         D  A+++L+  Y      D    VY+ M A G+
Sbjct: 360 IQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGI 419

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTL 360
           KPN +T+N L+  + +  +  +  +++KEM +   + P   +Y  L+   G+A    +  
Sbjct: 420 KPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAF 479

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
             ++EM ++G+      Y +L+   A  G   EA ++ EDM       PD   +S++IT 
Sbjct: 480 LQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDM-VKLGVNPDVQAYSALITG 538

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
                 V  A  +F EM++ G  PN      L + +  A R  D+
Sbjct: 539 LIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALDL 583



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 85/214 (39%), Gaps = 34/214 (15%)

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-------- 350
           +G +P +++YN ++  +    +  +    +  M DNG  P+   + +L+  +        
Sbjct: 1   MGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQV 60

Query: 351 ------------------------GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
                                   G  + G+     +R +  K   L V  Y T++   A
Sbjct: 61  GHKLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKA-SLDVISYTTVIKGLA 119

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           D    DEA E+FE++K++  C P+   ++++I      G++ +    F EM  +   P  
Sbjct: 120 DSKRIDEACELFEELKTA-GCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTR 178

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              T +I    KAQ   D  +   ++ + G  PD
Sbjct: 179 TTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPD 212


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 174/370 (47%), Gaps = 40/370 (10%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAV 220
           S  V  Y++ +    + + +D+A  L ++M+D G +P+ VT+ +L+S   +M  L  +AV
Sbjct: 84  SPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL-KEAV 142

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           + F RM   GC PD + Y+ +ID + + G++  A+ L++    +        +++L+  +
Sbjct: 143 DLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGF 202

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G F    +++++M   G  PN+ T+NNLLD   +     +   ++ EM   G  P+ 
Sbjct: 203 SRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDV 262

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            +Y +L+R         +   + REM   G+   +  YN L+   +  G  D A ++F +
Sbjct: 263 VSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYE 322

Query: 401 MKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLI--QCYG 457
           +  S   +PD++++S++I  C CR GKV  A  +F +M+  G  P+  V+  L+   C G
Sbjct: 323 IPKS-GLEPDAFSYSTIID-CLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRG 380

Query: 458 ---------------------------------KAQRTDDVVRALNRLPELGITPDDRFC 484
                                            KA+R+DDV    + L E G +PD    
Sbjct: 381 ERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEIS 440

Query: 485 GCLLNVMTQT 494
             +L  + ++
Sbjct: 441 KVILETLRRS 450



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 141/313 (45%), Gaps = 1/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  ++V  K    D     ++DML  G  P+  T+  L+          +A   F  M 
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMA 79

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + GC P+  +YS +I    R   V+ A  L +   +   + +   + +L+      G   
Sbjct: 80  AQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLK 139

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             ++++  M   G  P+ + YN L+D   +     +   +++EM + G  P   TY SLL
Sbjct: 140 EAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLL 199

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             + R        S++++M  +G   ++  +N LL     +G   EA  +F +M+S   C
Sbjct: 200 SGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSL-GC 258

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD  +++++I     +GK  EA+ +  EM+ +G  P++     LI  Y K+   D  ++
Sbjct: 259 PPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIK 318

Query: 468 ALNRLPELGITPD 480
               +P+ G+ PD
Sbjct: 319 LFYEIPKSGLEPD 331



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           +++ L+++   +G  D     Y +M A G  PN  TY  LL ++ +A+R  + +++++ M
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G SPN  +Y+ L+    R +  ++   +  EM + G Q +V  Y +LL+    +G  
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
            EA ++F  M     C PD   ++ +I   S +G + EA  +F EMLE G  P +F   S
Sbjct: 139 KEAVDLFSRM-VYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNS 197

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 484
           L+  + +      V      +   G  P+        D FC
Sbjct: 198 LLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFC 238



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 115/266 (43%), Gaps = 9/266 (3%)

Query: 126 LGDDFLEQDCV-------IILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFR 176
           L ++ LE+ C+        +L+  +         + F + L+      +  +N  +  F 
Sbjct: 179 LFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFC 238

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K  D+ +A RLF +M   G  PD V+++TLI        P++A      M   G  PD +
Sbjct: 239 KMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIV 298

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           +Y+ +ID Y ++G ++ A  L+          D  ++ST+I     AG       V+++M
Sbjct: 299 SYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDM 358

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
            A G  P+      L+  + R +R  +   +++ M      P    Y  L+    +A+  
Sbjct: 359 IANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRS 418

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLL 382
           +D   ++ E+ E+G    V +   +L
Sbjct: 419 DDVCEIFHELTERGFSPDVEISKVIL 444



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 1/174 (0%)

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           ++YN LL+ + ++ R   V   Y +M   G  PN  TY  LLR+  +A+  E+  SV+R 
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M  +G   +V  Y+ L+A        DEA E+  +M    + QP+  T+ S+++     G
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGH-QPNVVTYGSLLSGLCKMG 136

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           K+ EA  +F+ M+  G  P+  V   LI  + K     +  R    + E G  P
Sbjct: 137 KLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIP 190


>gi|410110061|gb|AFV61110.1| pentatricopeptide repeat-containing protein 123, partial
           [Acantholippia seriphioides]
          Length = 416

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 80  DLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYSTLLTMYVENKKFLEALSVF 139

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 140 SEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 197

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 198 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSI 257

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 258 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 317

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 318 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKK 372

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 373 YANVVEVFDKMRGLGYFPDSDVIALVLN 400



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 14  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 73

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    +      +  ++STL+ +Y     F 
Sbjct: 74  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYSTLLTMYVENKKFL 133

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ +    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 134 EALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 193

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ S   
Sbjct: 194 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQ-SRGI 252

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R
Sbjct: 253 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKR 312

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 313 LLHELKRPDNIPRD 326



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 98/204 (48%), Gaps = 4/204 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  + ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 205 AIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 264

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 265 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 320

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 321 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVF 380

Query: 329 KEMTDNGLSPNWNTYASLLRAYGR 352
            +M   G  P+ +  A +L AYG+
Sbjct: 381 DKMRGLGYFPDSDVIALVLNAYGK 404


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 158/327 (48%), Gaps = 5/327 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDML-DRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFER 225
           YN  +    K + + +A  +F  M+ +R V PD V++S LI    +++ L  +A + +++
Sbjct: 124 YNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDEL-GRAEKLYKQ 182

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M    C P+  TY++ ++   R G +  A G+Y+   +     D   +STLI  +  A  
Sbjct: 183 MIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARK 242

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D    ++E M + G +PN +TYN LL  + +  +P +   ++++M + G  P+  TY +
Sbjct: 243 HDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTT 302

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           LL  +      E  + V+ EM  KG    V  YN LL      G   EA ++F+ M S E
Sbjct: 303 LLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRE 362

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEM-LEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            C+PD+ + + MI   S   ++ +A  +F  M  + G  P+L    SLI      QR  +
Sbjct: 363 -CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSE 421

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVM 491
            ++    +  L ++PD      LL  M
Sbjct: 422 AMKVFKEIDRLKLSPDPHAFNVLLEAM 448



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 127/256 (49%), Gaps = 3/256 (1%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
            LN +      A A   +   + A  S +VI Y+  +  F   R  D+A  LF+ M+ RG
Sbjct: 198 FLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRG 257

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
            +P+ VT++ L+      + P++A E F +M   GCDPD +TY++++  +   G +E A 
Sbjct: 258 CRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAV 317

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            ++D   ++    D  A++ L+K +  AG       +++ M +   KP+ +++N ++D +
Sbjct: 318 EVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGL 377

Query: 316 GRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
            +AKR      +++ M  D+G SP+  TY SL+      +   + + V++E+    +   
Sbjct: 378 SKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPD 437

Query: 375 VTLYNTLLAMCADVGY 390
              +N LL      G+
Sbjct: 438 PHAFNVLLEAMYAAGH 453



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 131/257 (50%), Gaps = 6/257 (2%)

Query: 165 VILYNVTMK-VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           V  YN  +  + RK R  D A+ ++++M+  G  PD +T+STLI    +    ++A E F
Sbjct: 192 VTTYNAFLNGLMRKGRIAD-AQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELF 250

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M S GC P+A+TY+ ++    +    + A  L+ +        D   ++TL+  +   
Sbjct: 251 EAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNV 310

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +  + V++EM + G  P+++ YN LL    RA +P + + +++ M      P+  ++
Sbjct: 311 GKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSH 370

Query: 344 ASLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDM 401
             ++    +A+  +D + V+  M ++ G    +  YN+L+  +C +   + EA ++F+++
Sbjct: 371 NIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLS-EAMKVFKEI 429

Query: 402 KSSENCQPDSWTFSSMI 418
              +   PD   F+ ++
Sbjct: 430 DRLK-LSPDPHAFNVLL 445



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 126/302 (41%), Gaps = 39/302 (12%)

Query: 217 NKAVEWFERMPSFGCDPDALTYS------------------------------------- 239
           + A+   E M   G  PD  T+S                                     
Sbjct: 66  DSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYN 125

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           S++++  +A  V  AF ++    +E+  + D  ++S LI  +           +Y++M  
Sbjct: 126 SLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMID 185

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
           +   PN+ TYN  L+ + R  R    + +Y+EM   G SP+  TY++L+  +  AR  + 
Sbjct: 186 LNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQ 245

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
              ++  M  +G + +   YN LL         DEA E+F  M     C PD  T+++++
Sbjct: 246 AHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKM-VERGCDPDKVTYTTLL 304

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 GK+ +A  +F+EM+  G +P++     L++ + +A +  +  +    +      
Sbjct: 305 YGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECK 364

Query: 479 PD 480
           PD
Sbjct: 365 PD 366



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/267 (20%), Positives = 124/267 (46%), Gaps = 7/267 (2%)

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST---LIKLYGTAGNFDGCLNV 292
           + +++ +    ++G +E AF      +       P +  T   +I+    AG  D  L++
Sbjct: 12  VAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSALSL 71

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM--TDNGLSPNWNTYASLLRAY 350
            E M   G  P+M T++ L++ + +A +  + +   + M  T +  + +  +Y SLL + 
Sbjct: 72  LETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNSL 131

Query: 351 GRARYGEDTLSVYREM-KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
            +A+      +++  M  E+ +   V  Y+ L+     +     A ++++ M    NC P
Sbjct: 132 CKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDL-NCVP 190

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           +  T+++ +     +G++++A+ ++ EM+ AG  P++   ++LI  +  A++ D      
Sbjct: 191 NVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELF 250

Query: 470 NRLPELGITPDDRFCGCLLNVMTQTPK 496
             +   G  P+     CLL+ + +  K
Sbjct: 251 EAMISRGCRPNAVTYNCLLHGLCKESK 277


>gi|410110105|gb|AFV61132.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           aristata]
          Length = 382

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 174/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 24  AISIFS-RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLL 82

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 83  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 140

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++   
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAY 260

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG   +
Sbjct: 261 ERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKD 315

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 316 ITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 359



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 141/286 (49%), Gaps = 1/286 (0%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V  D V +S LI  +R     +KA+  F R+   G  PD + Y++MI+ +G+A     A 
Sbjct: 1   VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 60

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L    +      +  ++STL+ +Y     F   L+V+ EM+ I    ++ T N ++D  
Sbjct: 61  SLIGEMKAAGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 120

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           G+     +   ++  M   G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V
Sbjct: 121 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 180

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YN+++ +       ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F 
Sbjct: 181 VTYNSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 239

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           ++  +G E +  +  ++I  Y +A       R L+ L      P D
Sbjct: 240 KLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRD 285



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 164 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 223

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 224 IWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 279

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 280 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVF 339

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ +  A +L AYG+ +  +    VY EM+E G
Sbjct: 340 DKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 381



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 130/278 (46%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 114 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 173

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 174 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 231

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ G++ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 232 DRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 290

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 291 LAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGL-G 346

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   +    + +  GK+ E   A  ++ EM E G
Sbjct: 347 YFPDSDVIA---IVLNAYGKLQEFDKANDVYMEMQEVG 381


>gi|255661182|gb|ACU25760.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 426

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 78  DLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLLTMYVENKKFLEALSVF 137

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 138 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 195

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 196 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSI 255

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 256 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 315

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 316 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKK 370

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 371 YANVVEVFDKMRGLGYFPDSNVIAIVLN 398



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  PD + Y++MI  +G+A     A  L    +      +  ++STL+ +Y     F 
Sbjct: 72  NSGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ S   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQ-SRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 106/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  + ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 319 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMRGLGYFPDSNVIAIVLNAYGKLHEFDKANDVYMEMQEVG 420



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 131/278 (47%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SMI  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 213 KNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 270

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 271 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 329

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 330 LAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVFDKMRGL-G 385

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   + +  + +  GK+ E   A  ++ EM E G
Sbjct: 386 YFPDS---NVIAIVLNAYGKLHEFDKANDVYMEMQEVG 420


>gi|255661216|gb|ACU25777.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 426

 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 188/381 (49%), Gaps = 16/381 (4%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDTA---ALALTYFTNKLKASK---EVILYNV 170
           DD  S L+ +  D +  D V+  N +         + A++ F+ +LK S    +++ YN 
Sbjct: 26  DDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFS-RLKRSGITPDLVAYNS 84

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
            + VF K +   +A  L  +M   GV PD V++ST+++    N+   +A+  F  M    
Sbjct: 85  MINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTILTMYVENHKFLEALSVFREMREIN 144

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDG 288
           C  D  T + MID YG+    + A  L+   R  K  I+PN  +++TL+++YG A  F  
Sbjct: 145 CLLDLTTCNIMIDVYGQLDMAKEADRLFWSMR--KMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            ++++  M+   ++ N++TYN ++   G+     +   + +EM + G+ PN  TY++++ 
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQNRGIEPNAITYSTIIS 262

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            +G+    +    ++++++  G+++   LY T++      G    A  +  ++K     +
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELK-----R 317

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++  +V   
Sbjct: 318 PDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIDLFSKYRKYTNVGEV 377

Query: 469 LNRLPELGITPDDRFCGCLLN 489
             ++  LG  PD      +LN
Sbjct: 378 FEKMRGLGYFPDSNVIALVLN 398



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 150/305 (49%), Gaps = 10/305 (3%)

Query: 185 ERLFDDML--------DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           E LFDD L        DR V  D V +S LI  +R     +KA+  F R+   G  PD +
Sbjct: 22  EGLFDDALSWLQKMEQDR-VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDLV 80

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            Y+SMI+ +G+A   + A  L    R      D  ++ST++ +Y     F   L+V+ EM
Sbjct: 81  AYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTILTMYVENHKFLEALSVFREM 140

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           + I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LLR YG A   
Sbjct: 141 REINCLLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGDAELF 200

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            + + ++R M+ K ++ +V  YNT++ +       ++A  + ++M+ +   +P++ T+S+
Sbjct: 201 GEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNAITYST 259

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R L+ L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPD 319

Query: 477 ITPDD 481
             P D
Sbjct: 320 NIPRD 324



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 108/222 (48%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+ +T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQNRGIEPNAITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++D   + ++   V  ++
Sbjct: 319 DNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIDLFSKYRKYTNVGEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           ++M   G  P+ N  A +L AYG+    +    VY EM+++G
Sbjct: 379 EKMRGLGYFPDSNVIALVLNAYGKLHEFDKANEVYMEMQDEG 420



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 36/222 (16%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             +  +G++P+   Y S++  +G+A+  ++  S+  EM+  G                  
Sbjct: 68  SRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLISEMRVAG------------------ 109

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
                               PD+ ++S+++T+     K  EA ++F EM E     +L  
Sbjct: 110 ------------------VMPDTVSYSTILTMYVENHKFLEALSVFREMREINCLLDLTT 151

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
              +I  YG+     +  R    + ++GI P+      LL V
Sbjct: 152 CNIMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRV 193



 Score = 40.8 bits (94), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 58/130 (44%), Gaps = 1/130 (0%)

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           +E+ +      Y+TL+      G  D+A    + M+  +    D   +S++I +      
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQ-DRVPGDLVLYSNLIELSRKLCD 59

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            S+A ++F+ +  +G  P+L    S+I  +GKA+   +    ++ +   G+ PD      
Sbjct: 60  YSKAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYST 119

Query: 487 LLNVMTQTPK 496
           +L +  +  K
Sbjct: 120 ILTMYVENHK 129


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 169/340 (49%), Gaps = 8/340 (2%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL+L     K K   +V++YN  +    K + +D A  LF+ M  +G++PD  T+++LIS
Sbjct: 239 ALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLIS 298

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           C       + A      M     +P+ +T+S++IDA+ + G +  A  LYD     K  I
Sbjct: 299 CLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI--KRSI 356

Query: 269 DPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           DP+ F  S+LI  +      D   +++E M +    PN++TYN L+    +AKR  +   
Sbjct: 357 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGME 416

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +++EM+  GL  N  TY +L++   +A   +    ++++M   G+   +  Y+ LL    
Sbjct: 417 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 476

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G  ++A  +FE ++ S+  +PD +T++ MI      GKV +   +F  +   G +PN+
Sbjct: 477 KYGKLEKALVVFEYLQKSK-MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV 535

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            + T++I  + +    ++       + E G  PD    GC
Sbjct: 536 IIYTTMISGFCRKGLKEEADALFREMKEDGTLPDS---GC 572



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 181/377 (48%), Gaps = 6/377 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I++N         LAL      +K   E  ++  +  +  +   + +  A  L D M++ 
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 179

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G KPD VTF+TLI    ++N  ++AV   ++M   GC PD +TY ++++   + G++++A
Sbjct: 180 GYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLA 239

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             L  +    K   D   ++T+I       + D    ++ +M+  G++P++ TYN+L+  
Sbjct: 240 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISC 299

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +    R      +   M +  ++PN  T+++L+ A+ +     +   +Y EM ++ +   
Sbjct: 300 LCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAM 433
           +  Y++L+         DEA  +FE M  S++C P+  T++++I   C  + +V E   +
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLIKGFCKAK-RVEEGMEL 417

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           F EM + G   N     +LIQ   +A   D   +   ++   G+ PD      LL+ + +
Sbjct: 418 FREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCK 477

Query: 494 TPKEELGKLV-ECVEKS 509
             K E   +V E ++KS
Sbjct: 478 YGKLEKALVVFEYLQKS 494



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 161/345 (46%), Gaps = 13/345 (3%)

Query: 142 MTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNV 201
           + N  + A+AL     +     +++ Y   +    K  D+D A  L   M    ++ D V
Sbjct: 197 LHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVV 256

Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA---YGRAGNV-EMAFGL 257
            ++T+I         + A   F +M + G  PD  TY+S+I     YGR  +   +   +
Sbjct: 257 IYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNM 316

Query: 258 YDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            +R      +I+PN   FS LI  +   G       +Y+EM    + P++ TY++L++  
Sbjct: 317 IER------KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 370

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
               R  + K +++ M      PN  TY +L++ + +A+  E+ + ++REM ++G+  + 
Sbjct: 371 CMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 430

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YNTL+      G  D A +IF+ M  S+   PD  T+S ++      GK+ +A  +F 
Sbjct: 431 VTYNTLIQGLFQAGDCDMAQKIFKKM-VSDGVPPDIITYSILLDGLCKYGKLEKALVVFE 489

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            + ++  EP+++    +I+   KA + +D       L   G+ P+
Sbjct: 490 YLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 534



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 147/302 (48%), Gaps = 5/302 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           LD A  LF +M+     P  V F+ L+S  A+M    +  +   ERM +     D  +Y+
Sbjct: 61  LDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKF-DLVISLGERMQNLRISYDLYSYN 119

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +I+ + R   + +A  +  +     +  D    S+L+  Y  +      + + ++M  +
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 179

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G KP+ +T+N L+  +    +  +   +  +M   G  P+  TY +++    +    +  
Sbjct: 180 GYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLA 239

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           LS+ ++M++  ++  V +YNT++       + D+AF +F  M+ ++  +PD +T++S+I+
Sbjct: 240 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKME-TKGIRPDVFTYNSLIS 298

Query: 420 ICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
            C C  G+ S+A  + + M+E    PN+   ++LI  + K  +  +  +  + + +  I 
Sbjct: 299 -CLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 357

Query: 479 PD 480
           PD
Sbjct: 358 PD 359



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 158/329 (48%), Gaps = 12/329 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           ++ +N  +    K +  D    L + M +  +  D  +++ LI+C  R + LP  A+   
Sbjct: 80  IVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLP-LALAVL 138

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M   G +PD +T SS+++ Y  +  +  A  L D+     ++ D   F+TLI      
Sbjct: 139 GKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLH 198

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                 + + ++M   G +P+++TY  +++ + +        ++ K+M    +  +   Y
Sbjct: 199 NKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 258

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +++    + ++ +D  +++ +M+ KG++  V  YN+L++   + G   +A  +  +M  
Sbjct: 259 NTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNM-I 317

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                P+  TFS++I      GK+ EAE +++EM++   +P++F  +SLI  +    R D
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMT 492
           +       + EL I+ D     C  NV+T
Sbjct: 378 EA----KHMFELMISKD-----CFPNVVT 397



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 138/299 (46%), Gaps = 42/299 (14%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K +  V+ ++  +  F K   L +AE+L+D+M+ R + PD  T+S+LI+   M++  ++A
Sbjct: 320 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 379

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              FE M S  C P+ +TY+++I  + +A  VE    L+          +   ++TLI+ 
Sbjct: 380 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG 439

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM------------------------ 315
              AG+ D    ++++M + GV P++ITY+ LLD +                        
Sbjct: 440 LFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 499

Query: 316 --------------GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
                         G+ +  W    ++  ++  G+ PN   Y +++  + R    E+  +
Sbjct: 500 IYTYNIMIEGMCKAGKVEDGWD---LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 556

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
           ++REMKE G       YNTL+      G    + E+ ++M+S      D+ T S +I +
Sbjct: 557 LFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSC-GFVGDASTISMVINM 614



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 113/225 (50%), Gaps = 4/225 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +K F K + +++   LF +M  RG+  + VT++TLI         + A + F+
Sbjct: 395 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 454

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M S G  PD +TYS ++D   + G +E A  +++  +  K   D   ++ +I+    AG
Sbjct: 455 KMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAG 514

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +   +++  +   GVKPN+I Y  ++    R     +   +++EM ++G  P+   Y 
Sbjct: 515 KVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYN 574

Query: 345 SLLRAYGRARYGEDTLS--VYREMKEKGMQLSVTLYNTLLAMCAD 387
           +L+RA  R R G+   S  + +EM+  G     +  + ++ M  D
Sbjct: 575 TLIRA--RLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHD 617



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 61/131 (46%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL +  +  K K   ++  YN+ ++   K   ++    LF  +  +GVKP+ + ++T+IS
Sbjct: 484 ALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMIS 543

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 L  +A   F  M   G  PD+  Y+++I A  R G+   +  L    R+  +  
Sbjct: 544 GFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVG 603

Query: 269 DPNAFSTLIKL 279
           D +  S +I +
Sbjct: 604 DASTISMVINM 614


>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
 gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
          Length = 384

 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 156/333 (46%), Gaps = 5/333 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ILYN  +        L+ AE++ DDM    V  + VT++ LI             + F+ 
Sbjct: 54  ILYNCLVNGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQE 113

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P++ TY+++I  YGR G  + A  LYD         D + ++  I +YG  G 
Sbjct: 114 MKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGL 173

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT--IYKEMTDNGLSPNWNTY 343
            +    + +EM   GV P+ +TYN LLD    AK+ + VK   I +EMT+ G  PN  TY
Sbjct: 174 LEDMERLLDEMDTKGVPPDQVTYNTLLDVY--AKKSYFVKAHEILREMTEAGYRPNIWTY 231

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             +L +  + +   +   ++  +K KG+  ++  Y+ +L++    G   EA +++++M  
Sbjct: 232 NIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIE 291

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +  C P    +S +I      G   EA A F +M ++G  P+  + T+L+  YGKA R  
Sbjct: 292 A-GCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCR 350

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           +       + + G  PD    G L+       +
Sbjct: 351 EAELLYFEMTKEGFVPDGITYGILVRAFANAGR 383



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 166/349 (47%), Gaps = 2/349 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVF-RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A +L Y   K      V+ Y V +  + R+   LD A RL + M + G KPD + ++ L+
Sbjct: 1   ACSLFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLV 60

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    +     A +  + M       + +TY+++I  Y   G ++    L+   +++   
Sbjct: 61  NGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGES 120

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            +   ++ LI+ YG  G F   L +Y+EM  +G   ++ TYN  +   G+      ++ +
Sbjct: 121 PNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERL 180

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
             EM   G+ P+  TY +LL  Y +  Y      + REM E G + ++  YN +L+    
Sbjct: 181 LDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARK 240

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
                EA ++FE++KS +   P+  T+S+M+++    G  +EA  +++EM+EAG  P + 
Sbjct: 241 EQSVAEATQLFENLKS-KGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCII 299

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
             + LI+ YG      + +     + + GI PD +    L++   +  +
Sbjct: 300 AYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGR 348



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 1/302 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S  ++ Y   +K +     L    +LF +M D+G  P++ T++ LI       L  +A
Sbjct: 83  KVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEA 142

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           +E ++ M   GC  D  TY+  I  YG+ G +E    L D    +    D   ++TL+ +
Sbjct: 143 LELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDV 202

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           Y     F     +  EM   G +PN+ TYN +L +  + +   +   +++ +   G+ PN
Sbjct: 203 YAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPN 262

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY+++L  YGR     +   ++ EM E G    +  Y+ L+      G   EA   F+
Sbjct: 263 IVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQ 322

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           DM+ S    PD+  +++++      G+  EAE ++ EM + GF P+      L++ +  A
Sbjct: 323 DMRKS-GIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRAFANA 381

Query: 460 QR 461
            R
Sbjct: 382 GR 383


>gi|410110103|gb|AFV61131.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           alba]
          Length = 419

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 84  DLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTSSYSTLLTMYVENKKFLEALSVF 143

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 144 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 201

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 202 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 261

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 262 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 321

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 322 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKK 376

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 377 YXNVVEVFDKMRGLGYFPDSNVIAVVLN 404



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 150/330 (45%), Gaps = 36/330 (10%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW------------------------ 222
           LFD+M  R + PD  T+STLI+      L + A+ W                        
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 223 -----------FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
                      F R+   G  PD + Y++MI+ +G+A     A  L    +      + +
Sbjct: 62  KLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTS 121

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           ++STL+ +Y     F   L+V+ EM+ I    ++ T N ++D  G+     +   ++  M
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 241

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  +
Sbjct: 242 EKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 300

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +I  Y +A       R L+ L      P D
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKRPDNIPRD 330



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 1/205 (0%)

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +     +   I+  +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  + 
Sbjct: 61  RKLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNT 120

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
           + Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 121 SSYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFW 179

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQ 460
            M + G EPN+    +L++ YG A+
Sbjct: 180 GMRKMGIEPNVVSYNTLLRVYGDAE 204



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 4/215 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 209 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 268

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 269 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 324

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 325 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYXNVVEVF 384

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
            +M   G  P+ N  A +L AYG+ +  +    VY
Sbjct: 385 DKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVY 419


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 171/359 (47%), Gaps = 35/359 (9%)

Query: 94  SYDTRYNSLVKLAADLDSCSATEDDVF-SVLRCLGDDFLEQDCVIILNNMTNPDTAALAL 152
           S   R N  VKL          ED  F S++R  G   L Q+ V + N+M +        
Sbjct: 143 SIKRRSNGTVKL----------EDRFFNSLIRSYGKAGLFQESVQVFNSMKS-------- 184

Query: 153 TYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLISCAR 211
                 +  S  V+ +N  + +  K    + A+ +FD+ML   GV PD  TF+ LI    
Sbjct: 185 ------VGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEMLSTYGVTPDTYTFNILIRGFC 238

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
            N++ ++   +F+ M  F CDPD +TY++++D   RAG V +A  + +    +   ++P+
Sbjct: 239 KNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPD 298

Query: 272 A--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
              ++TL++ Y      D  L V+EEM + G+KPN ITYN L+  +   ++  ++K I++
Sbjct: 299 VVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFE 358

Query: 330 -EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             +   G  P+  T  +L+ A+  A    D L V+ +M    ++     Y+ L+      
Sbjct: 359 GALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQR 418

Query: 389 GYTDEAFEIFEDMKSSE------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           G  + A ++F+++   E       C P    + SM       GK ++AE +F ++++ G
Sbjct: 419 GNFERAEQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRG 477



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 144/294 (48%), Gaps = 10/294 (3%)

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL---YDR 260
           +T+    R+   P+KA+++F   P  G   +  +Y  M++  GRA N+ +A        R
Sbjct: 87  TTVFEVLRLIKTPSKALQFFNWAPELGFTHNDQSYFLMLEILGRARNLNVARNFLFSIKR 146

Query: 261 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
             N   +++   F++LI+ YG AG F   + V+  MK++GV P+++T+N+LL  + +  R
Sbjct: 147 RSNGTVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGR 206

Query: 321 PWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
               ++++ EM    G++P+  T+  L+R + +    ++    ++EM        +  YN
Sbjct: 207 TNMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYN 266

Query: 380 TLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           TL+      G  + A  +   M K S N  PD  T+++++     + ++ EA  +F EM+
Sbjct: 267 TLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMV 326

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPDDRFCGCLLNVM 491
             G +PN     +LI+   + Q+ D + +     L   G  PD     C LN +
Sbjct: 327 SKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDT----CTLNTL 376



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 138/294 (46%), Gaps = 8/294 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRG---VKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           Y + +++  + R+L+ A      +  R    VK ++  F++LI       L  ++V+ F 
Sbjct: 121 YFLMLEILGRARNLNVARNFLFSIKRRSNGTVKLEDRFFNSLIRSYGKAGLFQESVQVFN 180

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGT 282
            M S G  P  +T++S++    + G   MA  ++D   +  + + P+   F+ LI+ +  
Sbjct: 181 SMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEMLS-TYGVTPDTYTFNILIRGFCK 239

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT--DNGLSPNW 340
               D     ++EM      P+++TYN L+D + RA +      +   M      L+P+ 
Sbjct: 240 NSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDV 299

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY +L+R Y      ++ L V+ EM  KG++ +   YNTL+    +V   D+  +IFE 
Sbjct: 300 VTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEG 359

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
                   PD+ T ++++      G +++A  +F +M+     P+    + LI+
Sbjct: 360 ALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIR 413



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 108/274 (39%), Gaps = 42/274 (15%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRG-VKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           I YN  +K   + + +DK +++F+  L  G   PD  T +TL++        N A+E FE
Sbjct: 335 ITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFE 394

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR------------------------ 260
           +M      PD+ TYS +I    + GN E A  L+D                         
Sbjct: 395 KMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGCTPLVAAYKSMF 454

Query: 261 ---ARNEKW----RI----------DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
               RN K     R+          DP +F  LIK +   G F+    +   M      P
Sbjct: 455 EFLCRNGKTAKAERVFRQLMKRGTQDPLSFKILIKGHCREGTFEAGYELLVLMLRRDFVP 514

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           ++ TY +L+D + +   P       ++M  +   P  +T+ S+L          ++    
Sbjct: 515 DLETYQSLIDGLLQKGEPLVAYQTLEKMIKSSHVPETSTFHSILARLLAKGCAHESARFI 574

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
             M E  ++ ++ L    + +    G  D+AF+I
Sbjct: 575 MLMLEGKIRQNINLSTHTVRLLFGSGLRDKAFKI 608


>gi|356569143|ref|XP_003552765.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 173/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LKAS    ++I YN  + VF K +   +A  L  +M D  V+PD V++STL+
Sbjct: 224 AISIFS-RLKASTISPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLL 282

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+    + A  L+   R  K  
Sbjct: 283 AIYVDNQKFVEALSLFFEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMR--KMG 340

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I PN  +++TL+++YG A  F   ++++  M++  V+ N++TYN +++  G+     +  
Sbjct: 341 IQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKAT 400

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM   G+ PN  TY++++  + +A   +    ++++++  G+++   LY T++   
Sbjct: 401 NLIQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAY 460

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K  +N   D+      I I +  G++ EA  +F +  +A    +
Sbjct: 461 ERAGLVAHAKRLLHELKRPDNIPRDT-----AIGILARAGRIEEATWVFRQAFDAREVKD 515

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I  + K ++  +VV    ++  +G  PD      +LN
Sbjct: 516 ISVFGCMINLFSKNKKYGNVVEVFEKMRVVGYFPDSDVIALVLN 559



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 108/452 (23%), Positives = 200/452 (44%), Gaps = 48/452 (10%)

Query: 78  IWVNPKSPRASKLKEK--SYDTRYNSLVKLAADLDSCSATEDDVFSVL-----RCLGDDF 130
           +W    S   S+ + +   Y  R   + +L A +   +  ED++++V+     R L   F
Sbjct: 46  VWTRTSSSNTSRQRSRRQQYWDRSVDMEELLAAIGQ-TQNEDELYAVMSPYNGRQLSMRF 104

Query: 131 LEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDD 190
           +    V +L+   +   A   L +  +K   S  +  YNV ++   + +    A  LFD+
Sbjct: 105 M----VSLLSREPDWQRALALLDWINDKALYSPSLFAYNVLLRNVLRAKQWHLAHGLFDE 160

Query: 191 MLDRGVKPDNVTFSTLIS-----------------------------------CARMNNL 215
           M  +G+ PD  T+STLI+                                    AR  + 
Sbjct: 161 MRQKGLSPDRYTYSTLITSFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLSD 220

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
            +KA+  F R+ +    PD + Y+SMI+ +G+A     A  L    R+   + D  ++ST
Sbjct: 221 YSKAISIFSRLKASTISPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYST 280

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           L+ +Y     F   L+++ EM       ++ T N ++D  G+   P +   ++  M   G
Sbjct: 281 LLAIYVDNQKFVEALSLFFEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMG 340

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           + PN  +Y +LLR YG A    + + ++R M+ K +Q +V  YNT++ +       ++A 
Sbjct: 341 IQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKAT 400

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            + ++MK     +P++ T+S++I+I    GK+  A  +F ++  +G   +  +  ++I  
Sbjct: 401 NLIQEMK-KRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVA 459

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
           Y +A       R L+ L      P D   G L
Sbjct: 460 YERAGLVAHAKRLLHELKRPDNIPRDTAIGIL 491



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 126/266 (47%), Gaps = 1/266 (0%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           P    Y+ ++    RA    +A GL+D  R +    D   +STLI  +G  G FD  L  
Sbjct: 133 PSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITSFGKHGLFDSSLFW 192

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
            ++M+   V  +++ Y+NL+D   +     +  +I+  +  + +SP+   Y S++  +G+
Sbjct: 193 LQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTISPDLIAYNSMINVFGK 252

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
           A+   +   + +EM++  +Q     Y+TLLA+  D     EA  +F +M  ++ C  D  
Sbjct: 253 AKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFFEMNEAK-CPLDLT 311

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T + MI +        EA+ +F  M + G +PN+    +L++ YG+A    + +     +
Sbjct: 312 TCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLM 371

Query: 473 PELGITPDDRFCGCLLNVMTQTPKEE 498
               +  +      ++N+  +T + E
Sbjct: 372 QSKDVQQNVVTYNTMINIYGKTLEHE 397



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 140/295 (47%), Gaps = 9/295 (3%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL+L +  N+ K   ++   N+ + V+ +     +A+RLF  M   G++P+ V+++TL+ 
Sbjct: 294 ALSLFFEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLR 353

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                +L  +A+  F  M S     + +TY++MI+ YG+    E A  L    +  K  I
Sbjct: 354 VYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMK--KRGI 411

Query: 269 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           +PNA  +ST+I ++  AG  D    +++++++ GV+ + + Y  ++    RA      K 
Sbjct: 412 EPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERAGLVAHAKR 471

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +  E+      P       L RA GR    E+   V+R+  +      ++++  ++ + +
Sbjct: 472 LLHELKRPDNIPRDTAIGILARA-GRI---EEATWVFRQAFDAREVKDISVFGCMINLFS 527

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
                    E+FE M+      PDS   + ++       +  +A+A++ +M E G
Sbjct: 528 KNKKYGNVVEVFEKMRVV-GYFPDSDVIALVLNAFGKLREFDKADALYRQMHEEG 581



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 100/234 (42%), Gaps = 31/234 (13%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L          + V+ YN  + ++ K  + +KA  L  +M  RG++P+ +T+ST+IS
Sbjct: 364 AIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMKKRGIEPNAITYSTIIS 423

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY----------------------- 245
                   ++A   F+++ S G   D + Y +MI AY                       
Sbjct: 424 IWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIP 483

Query: 246 --------GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
                    RAG +E A  ++ +A + +   D + F  +I L+     +   + V+E+M+
Sbjct: 484 RDTAIGILARAGRIEEATWVFRQAFDAREVKDISVFGCMINLFSKNKKYGNVVEVFEKMR 543

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
            +G  P+      +L+  G+ +   +   +Y++M + G       +  +L  YG
Sbjct: 544 VVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQMLSLYG 597



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 1/160 (0%)

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
           SP+   Y  LLR   RA+       ++ EM++KG+      Y+TL+      G  D +  
Sbjct: 132 SPSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITSFGKHGLFDSSLF 191

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
             + M+  +N   D   +S++I +       S+A ++F+ +  +   P+L    S+I  +
Sbjct: 192 WLQQMEQ-DNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTISPDLIAYNSMINVF 250

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           GKA+   +    L  + +  + PD      LL +     K
Sbjct: 251 GKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQK 290


>gi|410110095|gb|AFV61127.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           montevidensis]
          Length = 418

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 164/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 68  DLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKKFLEALSVF 127

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 128 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 185

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 186 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 245

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G ++   L+ T++      G    A  +  ++
Sbjct: 246 TYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKRLLHEL 305

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 306 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKK 360

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 361 YSNVVEVFDKMRGLGYFPDSDVIAIVLN 388



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 2   YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 61

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    +      +  ++STL+ +Y     F 
Sbjct: 62  RSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKKFL 121

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 122 EALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 181

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ S   
Sbjct: 182 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-SRGI 240

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R
Sbjct: 241 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKR 300

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 301 LLHELKRPDNIPRD 314



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 193 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 252

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 253 IWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 308

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 309 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVF 368

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ +  A +L AYG+ +  +    VY EM+E G
Sbjct: 369 DKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 410


>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 169/382 (44%), Gaps = 42/382 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNL----------- 215
           YN  +    +  DL+KA  L   M   G   D V +S +I S  R N +           
Sbjct: 187 YNALINACARNNDLEKAINLISRMRQDGYPSDFVNYSLIIQSLVRSNRIDSPILQKLYSE 246

Query: 216 -------------------------PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
                                    PNKA+E+   + + G  P   T  ++I A G +G 
Sbjct: 247 IQCDKLELDVQLSNDIIVGFAKAGDPNKAMEFLGMVQASGLSPRTATLIAVISALGDSGR 306

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
           +  A  +++  ++   +    A++ L+K Y  AG       +  EM+  GV P+  TY+ 
Sbjct: 307 IIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSL 366

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L+D    A R    + + KEM  N + PN   ++ +L +Y      + +  V +EMK  G
Sbjct: 367 LIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSG 426

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE- 429
           ++     YN ++         D A + F+ M  SE  QPD+ T++++I  C C+ ++ E 
Sbjct: 427 VRPDRHFYNVMIDTFGKFSCLDHAMDTFDKML-SEGIQPDTVTWNTLID-CHCKAELHER 484

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           AE +F EM+E GF P +     +I  +G+ +R DDV   +  +  LG+ P+      L++
Sbjct: 485 AEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLID 544

Query: 490 VMTQTPKEELGKLVECVEKSNS 511
           +  ++ +      +EC+E   S
Sbjct: 545 IYGKSGR--FSDAIECLEDMKS 564



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 164/365 (44%), Gaps = 39/365 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC---------ARM------ 212
           YN  +K + K   L  AE +  +M   GV PD  T+S LI           AR+      
Sbjct: 329 YNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEME 388

Query: 213 --NNLPNKAV------------EW------FERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
             N +PN  V            EW       + M + G  PD   Y+ MID +G+   ++
Sbjct: 389 ANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLD 448

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A   +D+  +E  + D   ++TLI  +  A   +    ++EEM   G  P + T+N ++
Sbjct: 449 HAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMI 508

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           ++ G  +R   VKT+   M   GL PN  TY +L+  YG++    D +    +MK  G++
Sbjct: 509 NSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLK 568

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            S T+YN L+   A  G +++A   F  M+ +++ +P     +S+I       + +EA +
Sbjct: 569 PSSTMYNALINAYAQKGLSEQAVNAFRLMR-ADSLKPSLLALNSLINAFGEDRRDAEAFS 627

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL---LN 489
           +   M E   +P++   T+L++   +  + + V      +   G TPD +    L   L 
Sbjct: 628 VLKYMKENDLKPDVVTYTTLMKALIRVDKFNKVPSVYEEMILAGCTPDRKARAMLRSALK 687

Query: 490 VMTQT 494
            M QT
Sbjct: 688 YMKQT 692



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 141/313 (45%), Gaps = 5/313 (1%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +AE +F++M D G+KP    ++ L+       +   A      M   G  PD  TYS +I
Sbjct: 309 EAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLI 368

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           DAY  AG  E A  +      E   I PN+  FS ++  Y   G +     V +EMK  G
Sbjct: 369 DAYSNAGRWESARIVLKEM--EANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSG 426

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           V+P+   YN ++DT G+          + +M   G+ P+  T+ +L+  + +A   E   
Sbjct: 427 VRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAE 486

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            ++ EM EKG    VT +N ++    +    D+   +  +M+S     P+  T++++I I
Sbjct: 487 ELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSL-GLLPNVVTYTTLIDI 545

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               G+ S+A     +M  AG +P+  +  +LI  Y +   ++  V A   +    + P 
Sbjct: 546 YGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPS 605

Query: 481 DRFCGCLLNVMTQ 493
                 L+N   +
Sbjct: 606 LLALNSLINAFGE 618



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 144/335 (42%), Gaps = 3/335 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K   +V L N  +  F K  D +KA      +   G+ P   T   +IS    +    +A
Sbjct: 251 KLELDVQLSNDIIVGFAKAGDPNKAMEFLGMVQASGLSPRTATLIAVISALGDSGRIIEA 310

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              FE M   G  P    Y+ ++  Y +AG ++ A  +           D   +S LI  
Sbjct: 311 EAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDA 370

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TIYKEMTDNGLSP 338
           Y  AG ++    V +EM+A  + PN   ++ +L +  R +  WQ    + KEM ++G+ P
Sbjct: 371 YSNAGRWESARIVLKEMEANNIMPNSYVFSRILASY-RDRGEWQKSFQVLKEMKNSGVRP 429

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           + + Y  ++  +G+    +  +  + +M  +G+Q     +NTL+         + A E+F
Sbjct: 430 DRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELF 489

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           E+M   +   P   TF+ MI     + +  + + +   M   G  PN+   T+LI  YGK
Sbjct: 490 EEMM-EKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGK 548

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           + R  D +  L  +   G+ P       L+N   Q
Sbjct: 549 SGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQ 583



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 149/306 (48%), Gaps = 10/306 (3%)

Query: 181 LDKAERLFDDML---DRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           L ++E+L++  L    + + P  +T++ LI +CAR N+L  KA+    RM   G   D +
Sbjct: 164 LGRSEKLYEAFLLSQQQALSP--LTYNALINACARNNDL-EKAINLISRMRQDGYPSDFV 220

Query: 237 TYSSMIDAYGRAGNVEMAF--GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
            YS +I +  R+  ++      LY   + +K  +D    + +I  +  AG+ +  +    
Sbjct: 221 NYSLIIQSLVRSNRIDSPILQKLYSEIQCDKLELDVQLSNDIIVGFAKAGDPNKAMEFLG 280

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
            ++A G+ P   T   ++  +G + R  + + I++EM DNGL P    Y  LL+ Y +A 
Sbjct: 281 MVQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAG 340

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             +D   +  EM+  G+      Y+ L+   ++ G  + A  + ++M+++ N  P+S+ F
Sbjct: 341 MLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEAN-NIMPNSYVF 399

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           S ++     RG+  ++  +  EM  +G  P+      +I  +GK    D  +   +++  
Sbjct: 400 SRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLS 459

Query: 475 LGITPD 480
            GI PD
Sbjct: 460 EGIQPD 465



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 97/198 (48%), Gaps = 3/198 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  +N+ +  F +    D  + L  +M   G+ P+ VT++TLI     +   + A+E  E
Sbjct: 501 VTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLE 560

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M S G  P +  Y+++I+AY + G  E A   +   R +  +    A ++LI  +G   
Sbjct: 561 DMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDR 620

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                 +V + MK   +KP+++TY  L+  + R  +  +V ++Y+EM   G +P+    A
Sbjct: 621 RDAEAFSVLKYMKENDLKPDVVTYTTLMKALIRVDKFNKVPSVYEEMILAGCTPDRKARA 680

Query: 345 SLLRAYGRARYGEDTLSV 362
            L  A    +Y + TL++
Sbjct: 681 MLRSAL---KYMKQTLNL 695


>gi|410110109|gb|AFV61134.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           diamantinensis]
          Length = 363

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 20  DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALXVF 79

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 80  SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 137

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 138 DAELFGESIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 197

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 198 TYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVAYERAGLIAHAKRLLHEL 257

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 258 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKK 312

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 313 YANVVEVFDKMRGLGYFPDSNVIAVVLN 340



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 130/278 (46%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +++  F  M  
Sbjct: 95  NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGESIHLFRLMQR 154

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 155 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 212

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 213 DRAAMLFQKLRSTGVEIDQILFQTMIVAYERAGLIAHAKRLLHELKRPDNIPR-DTAIHI 271

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 272 LAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVFDKMRGL-G 327

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   +    + +  GK+ E   A  ++ EM E G
Sbjct: 328 YFPDSNVIA---VVLNAYGKLQEFDKANDVYMEMQEVG 362


>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Brachypodium distachyon]
          Length = 800

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 152/316 (48%), Gaps = 1/316 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  ++VF K  +  +A R+  +M + G KPD VT++ L           +A +  +
Sbjct: 293 VVTYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLD 352

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M S G  P+A TY++++ AYG AG V+ A  L+D  +   +    N ++ ++ + G   
Sbjct: 353 TMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKS 412

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            F+  L +  EM   G  PN +T+N +L   G+      V  + + M   G+    +T+ 
Sbjct: 413 RFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFN 472

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+ AYGR     +   +Y EM   G    +T YN LL++ +  G    A  I   MK +
Sbjct: 473 TLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMK-N 531

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           E  +P+  ++S ++   +  G  +  EA+  E+ E    P+  +L +L+    K +R + 
Sbjct: 532 EGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWVILRTLVISNFKCRRLEG 591

Query: 465 VVRALNRLPELGITPD 480
           + RA   +   G  PD
Sbjct: 592 IERAFQEVMARGHKPD 607



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 147/313 (46%), Gaps = 2/313 (0%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           ++A  LF ++   GV P +V ++ ++    RM     + V   E M + G +PD  T S+
Sbjct: 204 ERALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQIVAMLEEMRAAGVEPDGFTAST 263

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I A GR G V+ A   ++  ++         ++ L++++G AGN+   L V +EM+  G
Sbjct: 264 VIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEESG 323

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
            KP+ +TYN L  +  RA    +       M   G+ PN  TY +++ AYG A   ++ L
Sbjct: 324 CKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDEAL 383

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
           +++  MK+ G    V  YN +L M       +   E+  +M  S  C P+  T+++M+ +
Sbjct: 384 ALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRS-GCTPNRVTWNTMLAV 442

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           C  RG       +   M   G E       +LI  YG+     +  +  + +   G TP 
Sbjct: 443 CGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPC 502

Query: 481 DRFCGCLLNVMTQ 493
                 LL+V+++
Sbjct: 503 LTTYNALLSVLSR 515



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 150/327 (45%), Gaps = 6/327 (1%)

Query: 166 ILYNVTMKVF-RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++YNV + V+ R  R   +   + ++M   GV+PD  T ST+I+    + L ++AV +FE
Sbjct: 223 VMYNVMLDVYGRMGRSWPQIVAMLEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFE 282

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            + S G  P  +TY++++  +G+AGN   A  +         + D   ++ L   Y  AG
Sbjct: 283 DLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAG 342

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            ++      + M + G+ PN  TYN ++   G A +  +   ++  M  NG  P  NTY 
Sbjct: 343 FYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYN 402

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            +L   G+       L +  EM   G   +   +NT+LA+C   G       + E MKS 
Sbjct: 403 LILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSC 462

Query: 405 --ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
             E C+    TF+++I+     G  + A  M++EM  AGF P L    +L+    +    
Sbjct: 463 GVELCRD---TFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDW 519

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLN 489
                 +N++   G  P+D     LL 
Sbjct: 520 TAAQSIINKMKNEGFKPNDMSYSLLLQ 546



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 146/316 (46%), Gaps = 7/316 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  M  +     +D+A  LFD M   G  P   T++ ++      +  N  +E    M 
Sbjct: 366 YNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMS 425

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P+ +T+++M+   G+ G       + +R ++    +  + F+TLI  YG  G+  
Sbjct: 426 RSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSRA 485

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +Y+EM A G  P + TYN LL  + R       ++I  +M + G  PN  +Y+ LL
Sbjct: 486 NAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLLL 545

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA---MCADVGYTDEAFEIFEDMKSS 404
           + + +        ++ +E+ E  +  S  +  TL+     C  +   + AF+  E M  +
Sbjct: 546 QCHAKGGNAAGIEAIEKEVYEGTVFPSWVILRTLVISNFKCRRLEGIERAFQ--EVM--A 601

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              +PD   F+SM+++ +  G   +A  MF+ + + G  P+L    S++  Y K+  + +
Sbjct: 602 RGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWE 661

Query: 465 VVRALNRLPELGITPD 480
             + L RL    + PD
Sbjct: 662 AEKILKRLKTSQLKPD 677



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 108/213 (50%), Gaps = 2/213 (0%)

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKT 326
           +D  A++T++      G ++  L ++ E+K  GV P  + YN +LD  GR  R W Q+  
Sbjct: 185 LDVRAYTTVLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQIVA 244

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           + +EM   G+ P+  T ++++ A GR    ++ ++ + ++K +G    V  YN LL +  
Sbjct: 245 MLEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFG 304

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G   EA  + ++M+ S  C+PD+ T++ +    +  G   EA    + M+  G  PN 
Sbjct: 305 KAGNYMEALRVLKEMEES-GCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNA 363

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           F   +++  YG A + D+ +   + + + G  P
Sbjct: 364 FTYNTIMTAYGNAGKVDEALALFDWMKKNGFIP 396



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 155/331 (46%), Gaps = 1/331 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALAL  +  K      V  YN+ + +  K    +    +  +M   G  P+ VT++T+++
Sbjct: 382 ALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLA 441

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 +        ERM S G +    T++++I AYGR G+   AF +YD      +  
Sbjct: 442 VCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTP 501

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
               ++ L+ +    G++    ++  +MK  G KPN ++Y+ LL    +      ++ I 
Sbjct: 502 CLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIE 561

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           KE+ +  + P+W    +L+ +  + R  E     ++E+  +G +  + ++N++L+M A  
Sbjct: 562 KEVYEGTVFPSWVILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKN 621

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G   +A E+F+ +K      PD  T++SM+ + +   +  EAE +   +  +  +P++  
Sbjct: 622 GMYRKAGEMFDSIKQG-GLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVS 680

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             +++  + K     +  R L+ +   G+ P
Sbjct: 681 YNTVMNGFCKQGLIKEAQRILSEMIADGVRP 711



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 1/219 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VIL  + +  F KCR L+  ER F +++ RG KPD V F++++S    N +  KA E F+
Sbjct: 574 VILRTLVISNF-KCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFD 632

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G  PD +TY+SM+D Y ++     A  +  R +  + + D  +++T++  +   G
Sbjct: 633 SIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQG 692

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  +  EM A GV+P ++TY+ L+      +   + + +   M    LSP   TY 
Sbjct: 693 LIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFSEAREVVSYMIQRNLSPMELTYR 752

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
            ++ +Y +A+  ++      E+ E        L +TL A
Sbjct: 753 RVVDSYCKAKRFDEARGFLYEIAETDRNSDQKLLSTLTA 791



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 142/294 (48%), Gaps = 1/294 (0%)

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
           R+ + M   GV+    TF+TLIS          A + ++ M + G  P   TY++++   
Sbjct: 454 RVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVL 513

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
            R G+   A  + ++ +NE ++ +  ++S L++ +   GN  G   + +E+    V P+ 
Sbjct: 514 SRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSW 573

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           +    L+ +  + +R   ++  ++E+   G  P+   + S+L  Y +         ++  
Sbjct: 574 VILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDS 633

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           +K+ G+   +  YN+++ M A    + EA +I + +K+S+  +PD  ++++++     +G
Sbjct: 634 IKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQ-LKPDVVSYNTVMNGFCKQG 692

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
            + EA+ + +EM+  G  P +    +L+  Y   +   +    ++ + +  ++P
Sbjct: 693 LIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFSEAREVVSYMIQRNLSP 746



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 5/123 (4%)

Query: 158 KLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
           +LK S+   +V+ YN  M  F K   + +A+R+  +M+  GV+P  VT+ TL+       
Sbjct: 668 RLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADGVRPCVVTYHTLVGGYASRE 727

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG-LYDRARNEKWRIDPNAF 273
           + ++A E    M      P  LTY  ++D+Y +A   + A G LY+ A  ++   D    
Sbjct: 728 MFSEAREVVSYMIQRNLSPMELTYRRVVDSYCKAKRFDEARGFLYEIAETDR-NSDQKLL 786

Query: 274 STL 276
           STL
Sbjct: 787 STL 789


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 162/369 (43%), Gaps = 51/369 (13%)

Query: 118 DVFS---VLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKV 174
           D+FS   +L+ L DD   Q  + +L+ M +            +K +   +V+ Y   +  
Sbjct: 170 DLFSYTILLKGLCDDKTSQQALDLLHIMAD------------HKGRCPLDVVAYTTVING 217

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
             +   LDKA  LFD MLDRG  PD VT+S++IS        +KA + F RM   G  PD
Sbjct: 218 LLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPD 277

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
            + Y+S++  Y  +G  + A G                                   +++
Sbjct: 278 CIMYTSLVHGYCSSGKPKEAIG-----------------------------------IFK 302

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           +M   GV+P+++TY  L+D + +  +  + + I+  +   G  P+  TY +LL  Y    
Sbjct: 303 KMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEG 362

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
              +   +   M +KGMQL   ++N ++   A     DEA  +F +M+  +   PD   +
Sbjct: 363 ALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMR-QQGLNPDIVNY 421

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
            +++ I    G+V +A + FN +   G  PN+ V T+LI       + D V      + +
Sbjct: 422 GTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMID 481

Query: 475 LGITPDDRF 483
            GI  D  F
Sbjct: 482 RGICLDTIF 490



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 161/339 (47%), Gaps = 1/339 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V+ Y+  +    K + +DKA ++F  M+  GV PD + +++L+     +  P +A+ 
Sbjct: 240 SPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIG 299

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F++M   G +PD +TY++++D   + G    A  ++D       + D   + TL+  Y 
Sbjct: 300 IFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYA 359

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
           T G      ++ + M   G++     +N ++    +  +  +   ++  M   GL+P+  
Sbjct: 360 TEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIV 419

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            Y ++L     A   +D LS +  +K +G+  ++ ++ TL+         D+  E+  +M
Sbjct: 420 NYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEM 479

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
                C  D+  F++++     +G+V EA+ +F+ M+  G EPN     +LI  Y    +
Sbjct: 480 IDRGICL-DTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGK 538

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
            D+ ++ L  +   G+ P D     ++N  +Q  + E G
Sbjct: 539 MDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDG 577



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/335 (19%), Positives = 151/335 (45%), Gaps = 5/335 (1%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK--PDNVTFSTLISCARMNNLPNK 218
           A+  +  Y + +   R+   LD A      ++  G++  P+ +  S+            +
Sbjct: 95  AAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRHEPNPLQSSSQGPLCTAGGRAMR 154

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR--IDPNAFSTL 276
                 RMP  GC PD  +Y+ ++         + A  L     + K R  +D  A++T+
Sbjct: 155 MDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTV 214

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           I      G  D   ++++ M   G  P+++TY++++  + + +   +   ++  M  NG+
Sbjct: 215 INGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGV 274

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            P+   Y SL+  Y  +   ++ + ++++M   G++  V  Y  L+      G + EA +
Sbjct: 275 MPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARK 334

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           IF+ +    + +PDS T+ +++   +  G + E   + + M++ G +    +   ++  Y
Sbjct: 335 IFDSLVKRGH-KPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAY 393

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            K  + D+ +   + + + G+ PD    G +L+++
Sbjct: 394 AKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDIL 428



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 150/346 (43%), Gaps = 18/346 (5%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCD---PDALTYS 239
           A ++FD +L RG +      +  +S  AR +  P  A+  F RMP  G     P+  TY 
Sbjct: 46  AHQVFDRLLKRGDRASIFDLNRALSDVARAS--PAVAISLFNRMPRAGATSAAPNIATYG 103

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST-----LIKLYGTAGNFDGCLNVYE 294
            +I    R G +++AF    R      R +PN   +     L    G A   D    V  
Sbjct: 104 IVIGCCRRLGRLDLAFATVGRVITTGLRHEPNPLQSSSQGPLCTAGGRAMRMD---IVLR 160

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSP-NWNTYASLLRAYGR 352
            M  +G KP++ +Y  LL  +   K   Q   +   M D+ G  P +   Y +++    R
Sbjct: 161 RMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLR 220

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
               +   S++  M ++G    V  Y+++++  +     D+A ++F  M       PD  
Sbjct: 221 EGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRM-VKNGVMPDCI 279

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
            ++S++      GK  EA  +F +M   G EP++   T+L+    K  ++ +  +  + L
Sbjct: 280 MYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSL 339

Query: 473 PELGITPDDRFCGCLLN-VMTQTPKEELGKLVECVEKSNSKLGYVV 517
            + G  PD    G LL+   T+    E+  L++ + K   +LG+ +
Sbjct: 340 VKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHI 385



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 130/334 (38%), Gaps = 71/334 (21%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-------SCARMNNL- 215
           +V+ Y   M    K     +A ++FD ++ RG KPD+ T+ TL+       +   M++L 
Sbjct: 312 DVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLL 371

Query: 216 ---------------------------PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
                                       ++A+  F  M   G +PD + Y +++D    A
Sbjct: 372 DLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTA 431

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           G V+ A   ++  ++E    +   F+TLI    T   +D    +  EM   G+  + I +
Sbjct: 432 GRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFF 491

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N ++  + +  R  + K ++  M   G+ PN NTY +L+  Y                  
Sbjct: 492 NAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGY------------------ 533

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
                           C D G  DEA ++   M      +P   T++++I   S  G++ 
Sbjct: 534 ----------------CLD-GKMDEAMKLLGVM-VFNGVKPSDVTYNTIINGYSQNGRIE 575

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           +   +  EM   G  P +     L+Q   +A RT
Sbjct: 576 DGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRT 609



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +D+A +L   M+  GVKP +VT++T+I+    N      +     M   G +P  +TY  
Sbjct: 539 MDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEM 598

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKW 266
           ++    +AG    A  LY   R  KW
Sbjct: 599 LLQGLFQAGRTVAAKELY--LRMIKW 622


>gi|410110131|gb|AFV61145.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rehmannii]
          Length = 379

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 39  DLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTSSYSTLLTMYVENKKFLEALSVF 98

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 99  SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 156

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 157 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 216

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 217 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 276

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 277 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKK 331

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 332 YANVVEVFDKMRGLGYFPDSNVIAVVLN 359



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 142/286 (49%), Gaps = 1/286 (0%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V  D V +S LI  +R     +KA+  F R+   G  PD + Y++MI+ +G+A     A 
Sbjct: 1   VPGDLVLYSNLIELSRKLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 60

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L    +      + +++STL+ +Y     F   L+V+ EM+ I    ++ T N ++D  
Sbjct: 61  SLIGEMKTAGVMPNTSSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 120

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           G+     +   ++  M   G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V
Sbjct: 121 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 180

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YN+++ +       ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F 
Sbjct: 181 VTYNSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 239

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           ++  +G E +  +  ++I  Y +A       R L+ L      P D
Sbjct: 240 KLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRD 285



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 106/220 (48%), Gaps = 4/220 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 164 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 223

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 224 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 279

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 280 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVF 339

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
            +M   G  P+ N  A +L AYG+ +  +    VY EM+E
Sbjct: 340 DKMRGLGYFPDSNVIAVVLNAYGKLQXFDKANDVYMEMQE 379



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 126/273 (46%), Gaps = 9/273 (3%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 114 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 173

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 174 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 231

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 232 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 290

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 291 LAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVFDKMRGL-G 346

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
             PDS   + ++          +A  ++ EM E
Sbjct: 347 YFPDSNVIAVVLNAYGKLQXFDKANDVYMEMQE 379


>gi|410110097|gb|AFV61128.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           rugosa]
          Length = 348

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 21  DLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMYVENKKFLEALSVF 80

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 81  XEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 138

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 139 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 198

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 199 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 258

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 259 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKK 313

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 314 YSNVVEVFDKMRGLGYFPDSDVIAIVLN 341



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 123/263 (46%), Gaps = 12/263 (4%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 96  NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 155

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 156 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 213

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 214 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 272

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 273 LAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGL-G 328

Query: 407 CQPDSWTFSSMITICSCRGKVSE 429
             PDS   +    + +  GK+ E
Sbjct: 329 YFPDSDVIA---IVLNAYGKLQE 348


>gi|410110143|gb|AFV61151.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           velutina]
          Length = 382

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 39  DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVF 98

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 99  SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 156

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 157 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 216

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 217 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 276

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   ++    K ++
Sbjct: 277 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVKDITVFERMVHLLSKYKK 331

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 332 YSNVVEVFDKMRGLGYFPDSDVIAIVLN 359



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 141/286 (49%), Gaps = 1/286 (0%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V  D V +S LI  +R     +KA+  F R+   G  PD + Y++MI+ +G+A     A 
Sbjct: 1   VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 60

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L    +      +  ++STL+ +Y     F   L+V+ EM+ I    ++ T N ++D  
Sbjct: 61  SLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 120

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           G+     +   ++  M   G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V
Sbjct: 121 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 180

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YN+++ +       ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F 
Sbjct: 181 VTYNSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 239

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           ++  +G E +  +  ++I  Y +A       R L+ L      P D
Sbjct: 240 KLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRD 285



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 164 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 223

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 224 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 279

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 280 DNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVKDITVFERMVHLLSKYKKYSNVVEVF 339

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ +  A +L AYG+ +  +    VY EM+E G
Sbjct: 340 DKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 381



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 130/278 (46%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 114 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 173

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 174 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 231

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 232 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 290

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 291 LAGAGRI---EEATYVFRQAVDAGEVKDITVFERMVHLLSKYKKYSNVVEVFDKMRGL-G 346

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   +    + +  GK+ E   A  ++ EM E G
Sbjct: 347 YFPDSDVIA---IVLNAYGKLQEFDKANDVYMEMQEVG 381


>gi|255661200|gb|ACU25769.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 426

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 197/402 (49%), Gaps = 25/402 (6%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDTA---ALALTYFTNKLKASK---EVILYNV 170
           DD  S L+ +  D +  D V+  N +         + A++ F+ +LK S    +++ YN 
Sbjct: 26  DDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDFSKAISIFS-RLKRSGITPDLVAYNS 84

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
            + VF K +   +A  L  +M   G+ PD V++STL++    N    +A+  F  M    
Sbjct: 85  MINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLLTMYVENQKFLEALSVFAEMREIK 144

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDG 288
           C  + +T + MID YG+    + A  L+   R  K  I+PN  +++TL+++YG A  F  
Sbjct: 145 CLLNLITCNVMIDVYGQLDMAKEADKLFWGMR--KXGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            ++++  M+   ++ N++TYN ++   G+     +   + +EM + G+ P+  TY++++ 
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNRGIEPDAITYSTIIS 262

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            +G+    +    ++++++  G+++   LY T++      G    A  +  ++K     +
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVEIDQILYQTMIVAYERAGLVAHAKRLLHELK-----R 317

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++  +VV  
Sbjct: 318 PDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMINLFSKYKKYSNVVEV 377

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 510
             ++  LG  PD      +LN          GKL E  EK+N
Sbjct: 378 FEKMRGLGYFPDSNVIALVLNA--------YGKLRE-FEKAN 410



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 149/305 (48%), Gaps = 10/305 (3%)

Query: 185 ERLFDDML--------DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           E LFDD L        DR V  D V +S LI  +R     +KA+  F R+   G  PD +
Sbjct: 22  EGLFDDALSWLQKMEQDR-VPGDLVLYSNLIELSRKLCDFSKAISIFSRLKRSGITPDLV 80

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            Y+SMI+ +G+A     A  L    R      D  ++STL+ +Y     F   L+V+ EM
Sbjct: 81  AYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLLTMYVENQKFLEALSVFAEM 140

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           + I    N+IT N ++D  G+     +   ++  M   G+ PN  +Y +LLR YG A   
Sbjct: 141 REIKCLLNLITCNVMIDVYGQLDMAKEADKLFWGMRKXGIEPNVVSYNTLLRVYGDAELF 200

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            + + ++R M+ K ++ +V  YNT++ +       ++A  + ++M  +   +PD+ T+S+
Sbjct: 201 GEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEM-HNRGIEPDAITYST 259

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R L+ L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVEIDQILYQTMIVAYERAGLVAHAKRLLHELKRPD 319

Query: 477 ITPDD 481
             P D
Sbjct: 320 NIPRD 324



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 109/226 (48%), Gaps = 4/226 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++PD +T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNRGIEPDAITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVEIDQILYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  +++   + K+   V  ++
Sbjct: 319 DNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMINLFSKYKKYSNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           ++M   G  P+ N  A +L AYG+ R  E     Y EM+++G   S
Sbjct: 379 EKMRGLGYFPDSNVIALVLNAYGKLREFEKANDAYTEMQDEGCXFS 424


>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
          Length = 414

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 161/322 (50%), Gaps = 4/322 (1%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D  AL  ++  + L  S +V  +NV +K   +  +L KA  L + M + G  PD +T + 
Sbjct: 64  DAVALFESWIQDGLY-SPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNI 122

Query: 206 LISCARMNNLPNKAVEWFERMPSFG-CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
           L+         NK  E   R+   G C P+ +TY+S+I  Y +AG ++ AF +Y+     
Sbjct: 123 LVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQS 182

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
             R +   ++ LI  YG A + +  + +Y ++      P+++T+N+L+D   R  +    
Sbjct: 183 GTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLDDA 242

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT-LYNTLLA 383
             I+ EM  + + PN  T++ ++ +        + LS+ RE+  +   +  T +YN ++ 
Sbjct: 243 MRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRELNMRADIVPQTFIYNPIID 302

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
           +    G  DEA  I  DM+  + C PD +T++ +I     +G++ EA  +F++M+E G  
Sbjct: 303 ILCKGGKVDEANLIVTDMEE-KGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKMVETGCR 361

Query: 444 PNLFVLTSLIQCYGKAQRTDDV 465
           P+   + S I C  KA   ++V
Sbjct: 362 PDNITINSFISCVLKAGMPNEV 383



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 149/313 (47%), Gaps = 10/313 (3%)

Query: 184 AERLFDDMLDRGV-KPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           A  LF+  +  G+  PD  +F+ +I    R+ NL  KA+E  ERM  FGC PD +T + +
Sbjct: 65  AVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNL-QKALELVERMTEFGCSPDTITQNIL 123

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           +D   R   V     +  R + +   + PN   ++++I  Y  AG      +VY +M   
Sbjct: 124 VDGLCRVKQVNKGHEVLRRLQRDGVCM-PNVVTYTSVISGYCKAGRMKDAFSVYNDMLQS 182

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G +PN +TYN L++  G+A        +Y ++  +   P+  T+ SL+  Y R    +D 
Sbjct: 183 GTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLDDA 242

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           + ++ EM +  +Q +V  ++ ++        + EA  +  ++    +  P ++ ++ +I 
Sbjct: 243 MRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRELNMRADIVPQTFIYNPIID 302

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           I    GKV EA  +  +M E G  P+ +  T LI  +    R  + V   +++ E G  P
Sbjct: 303 ILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKMVETGCRP 362

Query: 480 D----DRFCGCLL 488
           D    + F  C+L
Sbjct: 363 DNITINSFISCVL 375



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 159/356 (44%), Gaps = 15/356 (4%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G  PD   FS +        L + A     +   FGC  +   Y+++++     G  + A
Sbjct: 6   GYVPDAGFFSFVAGSCTNAGLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRAQDA 65

Query: 255 FGLYDR-ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
             L++   ++  +  D  +F+ +IK     GN    L + E M   G  P+ IT N L+D
Sbjct: 66  VALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVD 125

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
            + R K+  +   + + +  +G+  PN  TY S++  Y +A   +D  SVY +M + G +
Sbjct: 126 GLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTR 185

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAE 431
            +   YN L+         + A  ++  +    +C PD  TF+S+I   C C G++ +A 
Sbjct: 186 PNTVTYNVLINGYGKALDMESAVRMYWQL-ILHSCPPDVVTFNSLIDGYCRC-GQLDDAM 243

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG----ITPDDRFCGCL 487
            ++ EM +   +PN++  + +I       R+ +   AL+ L EL     I P       +
Sbjct: 244 RIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAE---ALSLLRELNMRADIVPQTFIYNPI 300

Query: 488 LNVMTQTPKEELGKLV--ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 541
           ++++ +  K +   L+  +  EK      Y   +L+    ++G    EA  LF+ +
Sbjct: 301 IDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRI-PEAVTLFHKM 355



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 106/238 (44%), Gaps = 7/238 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y   +  + K   +  A  +++DML  G +P+ VT++ LI+          AV  + 
Sbjct: 153 VVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYW 212

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGT 282
           ++    C PD +T++S+ID Y R G ++ A  ++         I PN   FS +I    T
Sbjct: 213 QLILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQH--HIQPNVYTFSIIIHSLCT 270

Query: 283 AGNFDGCLNVYEE--MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
                  L++  E  M+A  + P    YN ++D + +  +  +   I  +M + G  P+ 
Sbjct: 271 QNRSAEALSLLRELNMRA-DIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDK 329

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
            TY  L+  +       + ++++ +M E G +      N+ ++     G  +E  +I 
Sbjct: 330 YTYTILIIGHCMKGRIPEAVTLFHKMVETGCRPDNITINSFISCVLKAGMPNEVHQIM 387



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 6/139 (4%)

Query: 117 DDVFSVLRCLGDDFLEQDCV---IILNNMTNPDTAALALTYFTN---KLKASKEVILYNV 170
           DD   +   +G   ++ +     II++++   + +A AL+       +     +  +YN 
Sbjct: 240 DDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRELNMRADIVPQTFIYNP 299

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
            + +  K   +D+A  +  DM ++G  PD  T++ LI    M     +AV  F +M   G
Sbjct: 300 IIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKMVETG 359

Query: 231 CDPDALTYSSMIDAYGRAG 249
           C PD +T +S I    +AG
Sbjct: 360 CRPDNITINSFISCVLKAG 378


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 151/311 (48%), Gaps = 13/311 (4%)

Query: 188 FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
           F  +L RG  P+ VT++TLI    M +  ++A   F RM   GC PD +TY ++I     
Sbjct: 127 FAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCG 186

Query: 248 AGNVEMAFGLYDRARNEKWRID----PNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGV 301
            GN+ +A  L+    N+  R +    PN  +  I + G    G  D    ++EEMK  G+
Sbjct: 187 TGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGM 246

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGED 358
            P++I+YN+L+     A +  + K +  EM D GL P+  T+  L+      G+    + 
Sbjct: 247 IPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKK 306

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            L V   M E G+   +  YN+L+     VG  + A E+F  M  S+ C+PD  +++ +I
Sbjct: 307 LLGV---MIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSM-PSKGCEPDVISYNVLI 362

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
              S   KV EA  ++NEML  G  PN+    SL++    A + DD  +  + +   GI 
Sbjct: 363 NGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIA 422

Query: 479 PDDRFCGCLLN 489
            +    G  L+
Sbjct: 423 ENSYTYGIFLD 433



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 163/333 (48%), Gaps = 36/333 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ +NV +    K   + +A++L   M++ G+ PD VT+++LI    M    N A E F
Sbjct: 284 DMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELF 343

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             MPS GC+PD ++Y+ +I+ Y +   VE A  LY+                        
Sbjct: 344 VSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYN------------------------ 379

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                      EM  +G +PN+ITY++LL  +  A +    K ++  M  +G++ N  TY
Sbjct: 380 -----------EMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTY 428

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
              L    +     + + ++ E+K    +L +   N L+      G  + A+E+FE + S
Sbjct: 429 GIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKL-S 487

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +E  +P+  T++ MI      G+V +A  +  +M   G  P++    +L++ + ++ + +
Sbjct: 488 NEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLE 547

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           +VV+ L+R+ +  ++PD   C  +++++++  K
Sbjct: 548 EVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEK 580



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 194/438 (44%), Gaps = 15/438 (3%)

Query: 147 TAALALTYFTNKLKASKEVIL--YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFS 204
           TA  AL +F   ++++    L  +N  +    K +   +   L++ M   G+  D  T +
Sbjct: 49  TATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLN 108

Query: 205 TLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
            L++C    N   +    F  +   G  P+ +TY+++I        +  A  L+ R +  
Sbjct: 109 ILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKL 168

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM------KAIGVKPNMITYNNLLDTMGRA 318
               D   + TLIK     GN +  L +++EM        I  KPN+ITYN ++D + + 
Sbjct: 169 GCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKV 228

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
            R  + K +++EM   G+ P+  +Y SL+  +  A   E++  +  EM ++G+Q  +  +
Sbjct: 229 GREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTF 288

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           N L+      G   EA ++   M  S    PD  T++S+I      G ++ A  +F  M 
Sbjct: 289 NVLIDTLCKEGKVIEAKKLLGVMIES-GIVPDLVTYNSLIEGFCMVGDLNSARELFVSMP 347

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
             G EP++     LI  Y K  + ++ ++  N +  +G  P+      LL  +    K +
Sbjct: 348 SKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVD 407

Query: 499 LGKLVECVEKSN--SKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD---VKKAYCNCL 553
             K +  V K++  ++  Y   + L+    + D   EA +LF  +      ++    NCL
Sbjct: 408 DAKKLFSVMKAHGIAENSYTYGIFLDGL-CKNDCLFEAMKLFTELKSSNFKLEIENLNCL 466

Query: 554 IDLCVNLNLLENACKLLE 571
           ID       LE A +L E
Sbjct: 467 IDGLCKAGKLETAWELFE 484



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 137/316 (43%), Gaps = 36/316 (11%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I YN  +  F      ++++RL D+MLD+G++PD VTF+ LI          +A +   
Sbjct: 250 IISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLG 309

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  PD +TY+S+I+ +   G++  A  L+    ++    D  +++ LI  Y    
Sbjct: 310 VMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTL 369

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +  + +Y EM  +G +PN+ITY++LL  +  A +    K ++  M  +G++ N  TY 
Sbjct: 370 KVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYG 429

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
             L    +     + + ++ E+K    +L +   N L+      G  + A+E+FE + + 
Sbjct: 430 IFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNE 489

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
                                               G EPN+   T +I  + +  + D 
Sbjct: 490 ------------------------------------GHEPNVVTYTIMIHGFCREGQVDK 513

Query: 465 VVRALNRLPELGITPD 480
               + ++   G TPD
Sbjct: 514 ANVLIQKMEANGCTPD 529


>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
 gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
          Length = 651

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 151/302 (50%), Gaps = 2/302 (0%)

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
           +KV  +  ++ KA  + ++M   GV P+ + ++ ++           A + +E M S G 
Sbjct: 297 LKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGL 356

Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
            PD + Y+ ++ A+ +AG ++ A G+ +     +       +++++  Y   GN    L 
Sbjct: 357 KPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALE 416

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           V++ +K  G++P +++YN+LL  + +A++    + +  EM  NG+ P+   Y +L   Y 
Sbjct: 417 VFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYA 476

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           R    E    V++ MK++ + + +  Y  LL  C + G    A E+F+ +  +   + + 
Sbjct: 477 RTGDVEKAFGVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAAEVFQQITDA-GLKHNQ 535

Query: 412 WTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
            T+ +M+     R G+V EAE + + M   G +P+  +  SLI  YG + R +D+   L 
Sbjct: 536 ITYCTMLDGAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLA 595

Query: 471 RL 472
           ++
Sbjct: 596 KM 597



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/490 (22%), Positives = 213/490 (43%), Gaps = 42/490 (8%)

Query: 86  RASKLKEKSYDTRYNSLVKL---AADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNM 142
           RAS +K   +   Y SL+     A D++   A  +++ S    L +      C II    
Sbjct: 158 RASHIKPNVHI--YTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVF---CSIISGYA 212

Query: 143 TNPDTAALALTYFTNKLKASKEV---ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD 199
           +  +  A    ++  K KA   V   I+YN  ++ + +  +++  E L   M + G + +
Sbjct: 213 SAGNNEAA--EHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGN 270

Query: 200 NVTFSTLISC--------------ARMNNLPN-----KAVEWFERMPSFGCDPDALTYSS 240
              ++T+++                R+   P      KA++  E M   G  P+ + Y+ 
Sbjct: 271 LGLYTTVLNGFAEIRDEEKCLSFFHRLKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAM 330

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           ++D Y R G+   AF +++   +   + D   ++ L+  +  AG  D  L V E ++A  
Sbjct: 331 IMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANR 390

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           + P + TY ++LD   +     +   ++  +   GL P   +Y SLL    +AR  E+  
Sbjct: 391 LLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENAR 450

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            +  EM   G+  S  +Y  L    A  G  ++AF +F+ MK  EN   D   + +++  
Sbjct: 451 LMLNEMLANGVVPSERIYTALTEGYARTGDVEKAFGVFQRMKK-ENLAIDIVAYGALLKA 509

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ-CYGKAQRTDDVVRALNRLPELGITP 479
           C   G +  A  +F ++ +AG + N     +++   Y +A R ++    ++ +   G  P
Sbjct: 510 CCNSGAMHGAAEVFQQITDAGLKHNQITYCTMLDGAYARAGRVEEAEELVSAMERDGTKP 569

Query: 480 DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK-----LGYVVKLLLEEQDIEGDFKKE 533
           D      L+N    + + E++  L+  + KS+SK     +G    L+  +   +  F   
Sbjct: 570 DTLIYNSLINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLI--QVYAQAGFIPR 627

Query: 534 ATELFNSISK 543
           A ELF  +++
Sbjct: 628 AEELFQGLAR 637



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 157/381 (41%), Gaps = 29/381 (7%)

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           FE M +    P+   Y+S+I AY  A ++E A    +   ++  +++   F ++I  Y +
Sbjct: 154 FEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYAS 213

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           AGN +   + +E+ KA  + P  I YN+++    +A     V+ +  +M + G   N   
Sbjct: 214 AGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGL 273

Query: 343 YASLLRAYGRARYGEDTLSVYR-------------------EMKEKGMQLSVTLYNTLLA 383
           Y ++L  +   R  E  LS +                    EM + G+  +  +Y  ++ 
Sbjct: 274 YTTVLNGFAEIRDEEKCLSFFHRLKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAMIMD 333

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
             A  G    AF+++EDM S+   +PD   ++ ++      G++ +A  +   +      
Sbjct: 334 GYARGGDFTAAFKVWEDMVSA-GLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLL 392

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 503
           P +   TS++  Y K       +   +R+   G+ P       LL+ + +  + E  +L+
Sbjct: 393 PTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLM 452

Query: 504 --ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLN 561
             E +         +   L E     GD +K A  +F  + K+      N  ID+     
Sbjct: 453 LNEMLANGVVPSERIYTALTEGYARTGDVEK-AFGVFQRMKKE------NLAIDIVAYGA 505

Query: 562 LLENACKLLELGLTLEVYTDI 582
           LL+  C    +    EV+  I
Sbjct: 506 LLKACCNSGAMHGAAEVFQQI 526



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 96/197 (48%), Gaps = 8/197 (4%)

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           AGN+   +N ++ +     KP +  Y  L+D   R       +  ++ M  + + PN + 
Sbjct: 113 AGNWHKIVNAFQVID----KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHI 168

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y SL+ AY  AR  E  ++   EM  +G+QL+  ++ ++++  A  G  + A   FE  K
Sbjct: 169 YTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFK 228

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            +EN  P    ++S++      G +   EA+  +M E GF+ NL + T+++  + + +  
Sbjct: 229 -AENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDE 287

Query: 463 DDVVRALNRL---PELG 476
           +  +   +RL   P+ G
Sbjct: 288 EKCLSFFHRLKVSPQAG 304



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 115/259 (44%), Gaps = 20/259 (7%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           P    Y  ++D Y R G+   A   ++  R    + + + +++LI  Y  A + +G +  
Sbjct: 129 PVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVAC 188

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
            EEM + G++ N   + +++     A      +  +++     L P    Y S+++AY +
Sbjct: 189 TEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQ 248

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV-------------------GYTDE 393
           A   E   ++  +M+E+G Q ++ LY T+L   A++                   G   +
Sbjct: 249 AGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKVSPQAGNMAK 308

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A +I E+M       P+   ++ ++   +  G  + A  ++ +M+ AG +P++ +   L+
Sbjct: 309 ALDILEEM-DKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILV 367

Query: 454 QCYGKAQRTDDVVRALNRL 472
             + KA R D  +  L  +
Sbjct: 368 HAFCKAGRMDKALGVLENI 386



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 89/192 (46%), Gaps = 18/192 (9%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y    + + +  D++KA  +F  M    +  D V +  L+     +   + A E F+++
Sbjct: 467 IYTALTEGYARTGDVEKAFGVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAAEVFQQI 526

Query: 227 PSFGCDPDALTYSSMID-AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
              G   + +TY +M+D AY RAG VE A  L      +  + D   +++LI  YG +G 
Sbjct: 527 TDAGLKHNQITYCTMLDGAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGR 586

Query: 286 FDGCLNVYEEMKAI----------GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
                  +E+M+A+            KP++ TYN L+    +A    + + +++ +    
Sbjct: 587 -------HEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARLK 639

Query: 336 LSPNWNTYASLL 347
           L P+  T+ +L+
Sbjct: 640 LVPDATTWTALM 651


>gi|410110117|gb|AFV61138.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           hermannioides]
          Length = 382

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 164/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 39  DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVF 98

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 99  SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 156

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 157 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 216

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 217 TYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 276

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG    + V   +I    K ++
Sbjct: 277 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKXITVFERMIHLLSKYKK 331

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 332 YSNVVEVFDKMRGLGYFPDSDVIAIVLN 359



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 141/286 (49%), Gaps = 1/286 (0%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V  D V +S LI  +R     +KA+  F R+   G  PD + Y++MI+ +G+A     A 
Sbjct: 1   VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 60

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L    +      +  ++STL+ +Y     F   L+V+ EM+ I    ++ T N ++D  
Sbjct: 61  SLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 120

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           G+     +   ++  M   G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V
Sbjct: 121 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 180

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YN+++ +       ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F 
Sbjct: 181 VTYNSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKXGKLDRAAMLFQ 239

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           ++  +G E +  +  ++I  Y +A       R L+ L      P D
Sbjct: 240 KLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRD 285



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 106/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 164 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 223

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 224 IWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 279

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G    +  +  ++  + + K+   V  ++
Sbjct: 280 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKXITVFERMIHLLSKYKKYSNVVEVF 339

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ +  A +L AYG+ +  +    VY EM+E G
Sbjct: 340 DKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 381



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 130/278 (46%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 114 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 173

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 174 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKXGKL 231

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 232 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 290

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 291 LAGAGRI---EEATYVFRQAIDAGEVKXITVFERMIHLLSKYKKYSNVVEVFDKMRGL-G 346

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   +    + +  GK+ E   A  ++ EM E G
Sbjct: 347 YFPDSDVIA---IVLNAYGKLQEFDKANDVYMEMQEVG 381



 Score = 41.6 bits (96), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           +S++  +K  G    +  YN ++ +        EA  +  +MK++    P++ ++S+++T
Sbjct: 25  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTA-GVMPNTTSYSTLLT 83

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           +     K  EA ++F+EM E     +L     +I  YG+     +  +    + ++GI P
Sbjct: 84  MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 143

Query: 480 DDRFCGCLLNV 490
           +      LL V
Sbjct: 144 NVVSYNTLLRV 154



 Score = 40.0 bits (92), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           + LY+ L+ +   +    +A  IF  +K S    PD   +++MI +        EA ++ 
Sbjct: 5   LVLYSNLIELSRKLCDYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           +EM  AG  PN    ++L+  Y + ++  + +   + + E+    D   C  +++V  Q
Sbjct: 64  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 122


>gi|410110139|gb|AFV61149.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           salviifolia]
          Length = 378

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 164/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+S    N    +A+  F
Sbjct: 22  DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLSMYVENKKFLEALSVF 81

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 82  SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 139

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 140 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 199

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 200 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 259

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 260 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVKDITVFERMIHLLSKYKK 314

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +V    +++  LG  PD      +LN
Sbjct: 315 YSNVXEVFDKMRGLGYFPDSDVIAIVLN 342



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 114/236 (48%), Gaps = 4/236 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 147 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 206

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 207 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 262

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 263 DNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVKDITVFERMIHLLSKYKKYSNVXEVF 322

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
            +M   G  P+ +  A +L AYG+ +  +    VY EM+E G   S  ++  +L++
Sbjct: 323 DKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVGCVFSDEVHFQMLSL 378



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 130/278 (46%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 97  NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 156

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 157 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 214

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 215 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 273

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 274 LAGAGRI---EEATYVFRQAVDAGEVKDITVFERMIHLLSKYKKYSNVXEVFDKMRGL-G 329

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   +    + +  GK+ E   A  ++ EM E G
Sbjct: 330 YFPDSDVIA---IVLNAYGKLQEFDKANDVYMEMQEVG 364



 Score = 39.7 bits (91), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            +S++  +K  G    +  YN ++ +        EA  +  +MK++    P++ ++S+++
Sbjct: 7   AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTA-GVMPNTTSYSTLL 65

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
           ++     K  EA ++F+EM E     +L     +I  YG+     +  +    + ++GI 
Sbjct: 66  SMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 125

Query: 479 PDDRFCGCLLNV 490
           P+      LL V
Sbjct: 126 PNVVSYNTLLRV 137


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 163/344 (47%), Gaps = 2/344 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + ++V  + R  D+A R+  +M + G KPD +T + LI         + A + F +M 
Sbjct: 312 YTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMK 371

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                PD +TY +++D +   G  +    +++  + + +  +  A++ +I      G   
Sbjct: 372 KSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVF 431

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L +++EMK  G+ P   +YN+L+    +A R      ++K M  +G  PN  T+   +
Sbjct: 432 EALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFI 491

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YG++      +  Y  MK KG+   V   N +L   A  G    A  +F ++K+    
Sbjct: 492 NYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM-GV 550

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD+ T++ MI  CS   K  EA  +F +M+E    P++ V+ SLI    KA R D+  +
Sbjct: 551 SPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQ 610

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 510
              +L E+ + P D     LL  + +  K +E+  L+E +  SN
Sbjct: 611 IFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSN 654



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 148/304 (48%), Gaps = 1/304 (0%)

Query: 181  LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
            +D AE LF +M + G  PD  T++ L+     +    + ++  E M   G +   +TY++
Sbjct: 850  IDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNT 909

Query: 241  MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
            +I    ++  +E A  LY    ++ +   P  +  L+     AG  +   N++ EM   G
Sbjct: 910  IISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG 969

Query: 301  VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
             K N   YN LL+    A    +V  ++++M D G++P+  +Y  ++    +A    D L
Sbjct: 970  CKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGL 1029

Query: 361  SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            + +R++ E G++  +  YN L+         +EA  +F +M+  +   P+ +T++S+I  
Sbjct: 1030 TYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQ-KKGIVPNLYTYNSLILH 1088

Query: 421  CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
                GK +EA  M+ E+L  G++PN+F   +LI+ Y  +  TD    A  R+   G  P+
Sbjct: 1089 LGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1148

Query: 481  DRFC 484
               C
Sbjct: 1149 SSTC 1152



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 165/381 (43%), Gaps = 37/381 (9%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           C+ +L      D A   L    N+     +VI + V ++V      +  A+ +F  M   
Sbjct: 315 CIRVLGQARRFDEAYRILAEMENE-GCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKS 373

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
             KPD VT+ TL+     N      +E +  M + G + + + Y+++IDA  + G V  A
Sbjct: 374 DQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEA 433

Query: 255 FGLYDRARN-----EKWRID----------------------------PNAFSTL--IKL 279
             ++D  +      E++  +                            PN ++ +  I  
Sbjct: 434 LEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINY 493

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           YG +G     +  YE MK+ G+ P+++  N +L  + ++ R    K ++ E+   G+SP+
Sbjct: 494 YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPD 553

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY  +++   +A   ++ + ++ +M E      V + N+L+      G  DEA++IF 
Sbjct: 554 TITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFY 613

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
            +K   N +P   T+++++      GKV E   +  EM  + + PNL    +++ C  K 
Sbjct: 614 QLKEM-NLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKN 672

Query: 460 QRTDDVVRALNRLPELGITPD 480
              +D +  L  +   G  PD
Sbjct: 673 GAVNDALDMLYSMTTKGCIPD 693



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 143/324 (44%), Gaps = 39/324 (12%)

Query: 183  KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
            +A  L       GV     ++++LI      NL + A   F  M   GC PD  TY+ ++
Sbjct: 817  EAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLL 876

Query: 243  DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            DA G++  +E                                     L V EEM   G +
Sbjct: 877  DAMGKSMRIEEM-----------------------------------LKVQEEMHRKGYE 901

Query: 303  PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
               +TYN ++  + +++R  Q   +Y  +   G SP   TY  LL    +A   ED  ++
Sbjct: 902  STYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENL 961

Query: 363  YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TIC 421
            + EM E G + + T+YN LL      G T++   +F+DM   +   PD  +++ +I T+C
Sbjct: 962  FNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDM-VDQGINPDIKSYTIIIDTLC 1020

Query: 422  SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD- 480
               G++++    F ++LE G EP+L     LI   GK++R ++ V   N + + GI P+ 
Sbjct: 1021 KA-GQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNL 1079

Query: 481  DRFCGCLLNVMTQTPKEELGKLVE 504
              +   +L++       E GK+ E
Sbjct: 1080 YTYNSLILHLGKAGKAAEAGKMYE 1103



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 149/278 (53%), Gaps = 1/278 (0%)

Query: 168  YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
            YN+ +    K   +++  ++ ++M  +G +   VT++T+IS    +    +A++ +  + 
Sbjct: 872  YNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLM 931

Query: 228  SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
            S G  P   TY  ++D   +AG +E A  L++       + +   ++ L+  +  AGN +
Sbjct: 932  SQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTE 991

Query: 288  GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +++++M   G+ P++ +Y  ++DT+ +A +     T ++++ + GL P+  TY  L+
Sbjct: 992  KVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLI 1051

Query: 348  RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               G+++  E+ +S++ EM++KG+  ++  YN+L+      G   EA +++E++  ++  
Sbjct: 1052 DGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEEL-LTKGW 1110

Query: 408  QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            +P+ +T++++I   S  G    A A +  M+  G  PN
Sbjct: 1111 KPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1148



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 121/248 (48%), Gaps = 1/248 (0%)

Query: 166  ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
            + YN  +    K R L++A  L+ +++ +G  P   T+  L+           A   F  
Sbjct: 905  VTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNE 964

Query: 226  MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
            M  +GC  +   Y+ +++ +  AGN E    L+    ++    D  +++ +I     AG 
Sbjct: 965  MLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQ 1024

Query: 286  FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
             +  L  + ++  +G++P++ITYN L+D +G++KR  +  +++ EM   G+ PN  TY S
Sbjct: 1025 LNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNS 1084

Query: 346  LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
            L+   G+A    +   +Y E+  KG + +V  YN L+   +  G TD A+  +  M    
Sbjct: 1085 LILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVG- 1143

Query: 406  NCQPDSWT 413
             C P+S T
Sbjct: 1144 GCLPNSST 1151



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 135/292 (46%), Gaps = 5/292 (1%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           M + G+  +  T++ L+     +    +A+E ++ M   G  P   TYS ++ A+G+  +
Sbjct: 230 MKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRD 289

Query: 251 VEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           VE    L      E   + PN +S    I++ G A  FD    +  EM+  G KP++IT+
Sbjct: 290 VETVLWLLREM--EAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITH 347

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
             L+  +  A R    K ++ +M  +   P+  TY +LL  +      +  + ++  MK 
Sbjct: 348 TVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKA 407

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G   +V  Y  ++     VG   EA E+F++MK  +   P+ ++++S+I+      +  
Sbjct: 408 DGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMK-QKGIVPEQYSYNSLISGFLKADRFG 466

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +A  +F  M   G +PN +     I  YGK+  +   ++    +   GI PD
Sbjct: 467 DALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPD 518



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 112/479 (23%), Positives = 203/479 (42%), Gaps = 65/479 (13%)

Query: 157 NKLKA---SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
           N +KA   +  V+ Y   +    +   + +A  +FD+M  +G+ P+  ++++LIS     
Sbjct: 403 NAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKA 462

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           +    A+E F+ M   G  P+  T+   I+ YG++G    A   Y+  +++   I P+  
Sbjct: 463 DRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKG--IVPDVV 520

Query: 274 STLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNMITY----------------------- 308
           +    L+G A  G       V+ E+KA+GV P+ ITY                       
Sbjct: 521 AGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDM 580

Query: 309 ------------NNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
                       N+L+DT+   GR    WQ+    KEM    L P   TY +LL   GR 
Sbjct: 581 IENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMN---LEPTDGTYNTLLAGLGRE 637

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
              ++ + +  EM       ++  YNT+L      G  ++A ++   M +++ C PD  +
Sbjct: 638 GKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM-TTKGCIPDLSS 696

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           ++++I       + +EA ++F +M +    P+   L +++  + K     +   AL+ + 
Sbjct: 697 YNTVIYGLVKEERYNEAFSIFCQMKKV-LIPDYATLCTILPSFVKIGLMKE---ALHIIK 752

Query: 474 ELGITP----DDRFCGCLL-NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 528
           E  + P    D   C  L+  ++ +   E+  +  E +  S   L       L +   + 
Sbjct: 753 EYFLQPGSKTDRSSCHSLMEGILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQ 812

Query: 529 DFKKEATEL---FNSISKDVKKAYCNCLIDLCVNLNLLENA----CKLLELGLTLEVYT 580
               EA EL   F S    +K    N LI   V+ NL++ A     ++ ELG   + +T
Sbjct: 813 KKALEAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFT 871



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 125/271 (46%), Gaps = 8/271 (2%)

Query: 206 LISCARMNNLPNKAVEWFE---RMPSFGCDPDALTYS-SMIDAYGRAGNVEMAFGLYDRA 261
           +I   R  + P +A+E F    R P       +  Y   ++  +GR G++   F +  R 
Sbjct: 139 VIHALRSADGPAEALERFRSAARRPRVVHTTASCNYMLDLMRDHGRVGDMAEVFDVMQR- 197

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
             +  + +   F+ +    G  G           MK  G+  N  TYN L+  + ++   
Sbjct: 198 --QIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFD 255

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
            +   +YK M  +G+ P+  TY+ L+ A+G+ R  E  L + REM+  G++ +V  Y   
Sbjct: 256 REALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTIC 315

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           + +       DEA+ I  +M+ +E C+PD  T + +I +    G++S+A+ +F +M ++ 
Sbjct: 316 IRVLGQARRFDEAYRILAEME-NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSD 374

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
            +P+     +L+  +     +  V+   N +
Sbjct: 375 QKPDRVTYITLLDKFADNGESQSVMEIWNAM 405



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/361 (20%), Positives = 160/361 (44%), Gaps = 6/361 (1%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           +  S + I Y + +K   K    D+A ++F DM++    PD +  ++LI         ++
Sbjct: 548 MGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDE 607

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A + F ++     +P   TY++++   GR G V+    L +   +  +  +   ++T++ 
Sbjct: 608 AWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILD 667

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
                G  +  L++   M   G  P++ +YN ++  + + +R  +  +I+ +M    L P
Sbjct: 668 CLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIP 726

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYRE-MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           ++ T  ++L ++ +    ++ L + +E   + G +   +  ++L+        T+++ E 
Sbjct: 727 DYATLCTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRSSCHSLMEGILKKAGTEKSIE- 785

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           F ++ +S     D +    +I     + K  EA  +  +    G         SLI C  
Sbjct: 786 FAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGSYNSLI-CGL 844

Query: 458 KAQRTDDVVRAL-NRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY 515
             +   D+   L   + ELG  PD+     LL+ M ++ + EE+ K+ E + +   +  Y
Sbjct: 845 VDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTY 904

Query: 516 V 516
           V
Sbjct: 905 V 905


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 162/369 (43%), Gaps = 51/369 (13%)

Query: 118 DVFS---VLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKV 174
           D+FS   +L+ L DD   Q  + +L+ M +            +K +   +V+ Y   +  
Sbjct: 169 DLFSYTILLKGLCDDKTSQQALDLLHIMAD------------HKGRCPLDVVAYTTVING 216

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
             +   LDKA  LFD MLDRG  PD VT+S++IS        +KA + F RM   G  PD
Sbjct: 217 LLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPD 276

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
            + Y+S++  Y  +G  + A G                                   +++
Sbjct: 277 CIMYTSLVHGYCSSGKPKEAIG-----------------------------------IFK 301

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           +M   GV+P+++TY  L+D + +  +  + + I+  +   G  P+  TY +LL  Y    
Sbjct: 302 KMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEG 361

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
              +   +   M +KGMQL   ++N ++   A     DEA  +F +M+  +   PD   +
Sbjct: 362 ALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMR-QQGLNPDIVNY 420

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
            +++ I    G+V +A + FN +   G  PN+ V T+LI       + D V      + +
Sbjct: 421 GTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMID 480

Query: 475 LGITPDDRF 483
            GI  D  F
Sbjct: 481 RGICLDTIF 489



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 161/339 (47%), Gaps = 1/339 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V+ Y+  +    K + +DKA ++F  M+  GV PD + +++L+     +  P +A+ 
Sbjct: 239 SPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIG 298

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F++M   G +PD +TY++++D   + G    A  ++D       + D   + TL+  Y 
Sbjct: 299 IFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYA 358

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
           T G      ++ + M   G++     +N ++    +  +  +   ++  M   GL+P+  
Sbjct: 359 TEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIV 418

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            Y ++L     A   +D LS +  +K +G+  ++ ++ TL+         D+  E+  +M
Sbjct: 419 NYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEM 478

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
                C  D+  F++++     +G+V EA+ +F+ M+  G EPN     +LI  Y    +
Sbjct: 479 IDRGICL-DTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGK 537

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
            D+ ++ L  +   G+ P D     ++N  +Q  + E G
Sbjct: 538 MDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDG 576



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 151/342 (44%), Gaps = 11/342 (3%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCD---PDALTYS 239
           A ++FD +L RG +      +  +S  AR +  P  A+  F RMP  G     P+  TY 
Sbjct: 46  AHQVFDRLLKRGDRASIFDLNRALSDVARAS--PAVAISLFNRMPRAGATSAAPNIATYG 103

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEMKA 298
            +I    R G +++AF    R      R+ P  FS L+K L       D    V   M  
Sbjct: 104 IVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSPLLKGLCDRRRTSDAMDIVLRRMPE 163

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSP-NWNTYASLLRAYGRARYG 356
           +G KP++ +Y  LL  +   K   Q   +   M D+ G  P +   Y +++    R    
Sbjct: 164 LGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQL 223

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           +   S++  M ++G    V  Y+++++  +     D+A ++F  M       PD   ++S
Sbjct: 224 DKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRM-VKNGVMPDCIMYTS 282

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           ++      GK  EA  +F +M   G EP++   T+L+    K  ++ +  +  + L + G
Sbjct: 283 LVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRG 342

Query: 477 ITPDDRFCGCLLN-VMTQTPKEELGKLVECVEKSNSKLGYVV 517
             PD    G LL+   T+    E+  L++ + K   +LG+ +
Sbjct: 343 HKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHI 384



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 130/334 (38%), Gaps = 71/334 (21%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-------SCARMNNL- 215
           +V+ Y   M    K     +A ++FD ++ RG KPD+ T+ TL+       +   M++L 
Sbjct: 311 DVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLL 370

Query: 216 ---------------------------PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
                                       ++A+  F  M   G +PD + Y +++D    A
Sbjct: 371 DLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTA 430

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           G V+ A   ++  ++E    +   F+TLI    T   +D    +  EM   G+  + I +
Sbjct: 431 GRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFF 490

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N ++  + +  R  + K ++  M   G+ PN NTY +L+  Y                  
Sbjct: 491 NAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGY------------------ 532

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
                           C D G  DEA ++   M      +P   T++++I   S  G++ 
Sbjct: 533 ----------------CLD-GKMDEAMKLLGVM-VFNGVKPSDVTYNTIINGYSQNGRIE 574

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           +   +  EM   G  P +     L+Q   +A RT
Sbjct: 575 DGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRT 608



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +D+A +L   M+  GVKP +VT++T+I+    N      +     M   G +P  +TY  
Sbjct: 538 MDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEM 597

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKW 266
           ++    +AG    A  LY   R  KW
Sbjct: 598 LLQGLFQAGRTVAAKELY--LRMIKW 621


>gi|410110099|gb|AFV61129.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           trifolia]
          Length = 440

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 173/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 69  AISIFS-RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNTASYSTLL 127

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 128 TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 185

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 186 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 245

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM   G+ PN  TY++++  +G+    +    ++++++  G ++   L+ T++   
Sbjct: 246 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAY 305

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG   +
Sbjct: 306 ERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKD 360

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 361 ITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAXVLN 404



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 151/330 (45%), Gaps = 36/330 (10%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LFD+M  R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           +  +   A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  
Sbjct: 62  KXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNTA 121

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTD--------------------------------- 333
           +Y+ LL      K+  +  +++ EM +                                 
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 334 --NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 241

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  +
Sbjct: 242 EKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQT 300

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +I  Y +A       R L+ L      P D
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKRPDNIPRD 330



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 1/205 (0%)

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +     +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  + 
Sbjct: 61  RKXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNT 120

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 121 ASYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFW 179

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQ 460
            M + G EPN+    +L++ YG A+
Sbjct: 180 GMRKMGIEPNVVSYNTLLRVYGDAE 204



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 114/236 (48%), Gaps = 4/236 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 209 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 268

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 269 IWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 324

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 325 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVF 384

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
            +M   G  P+ +  A +L AYG+ +  +    VY EM+E G   S  ++  +L++
Sbjct: 385 DKMRGLGYFPDSDVIAXVLNAYGKLQEFDKANDVYMEMQEVGCVFSDEVHFQMLSL 440


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 162/354 (45%), Gaps = 9/354 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I Y   +  F K RD+ +   L  ++  RG  PD VT+ST+I           AV+ F
Sbjct: 178 DIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIF 237

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M    C P A+TY+S+I  Y RAG+++ A  L  +  ++K   D   ++TL+  +   
Sbjct: 238 EEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKM 294

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D    ++++M A  + P+++T+ +L+D +    R      + +E+T  G  P   TY
Sbjct: 295 GRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTY 354

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++  Y +A        +  + + +G   +   YN L+A C   G TD+A +  + + S
Sbjct: 355 NCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNS 414

Query: 404 SENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
                P S    ++I    CR G+  +A   + EM++ G+ P      +++    KA + 
Sbjct: 415 EGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQP 474

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNV-----MTQTPKEELGKLVECVEKSNS 511
                 L  + + G TP    C  +++      M Q   E   +L    +KS+S
Sbjct: 475 QQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRLYTDKSSS 528



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 140/316 (44%), Gaps = 4/316 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + Y   +    K R L  A ++  +M+     PDN T + ++    + +  + A E  
Sbjct: 38  DFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELV 97

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G   +A+TYS+++D   +   ++ A  L +             ++++I  +  A
Sbjct: 98  EEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRA 157

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D      E+M A G  P++ITY  L+    +++   +   +  E+T  G +P+  TY
Sbjct: 158 RRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTY 217

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           ++++    +A    D + ++ EM      ++   YN+L+      G  DEA  +   M  
Sbjct: 218 STVIDGLCKAGRLRDAVDIFEEMSCAPTAIT---YNSLIGGYCRAGDMDEAIRLLGKM-V 273

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            + C PD  T++++++     G++ +A  +F +M+     P++   TSL+       R +
Sbjct: 274 DDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRME 333

Query: 464 DVVRALNRLPELGITP 479
           D +  L  +   G  P
Sbjct: 334 DALELLEEITRRGCPP 349



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 140/320 (43%), Gaps = 45/320 (14%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLP 216
           ++  +   I YN  +  + +  D+D+A RL   M+D    PD VT++TL+S   +M  L 
Sbjct: 239 EMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRL- 297

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           + A E F++M +    PD +T++S++D     G +E A                      
Sbjct: 298 DDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDA---------------------- 335

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
                        L + EE+   G  P + TYN ++D   +A +  + + +  +    G 
Sbjct: 336 -------------LELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGF 382

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG--MQLSVTLYNTLL-AMCADVGYTDE 393
            PN  TY  L+    RA   +  L    ++  +G     SV +Y  +L A+C D G TD+
Sbjct: 383 VPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRD-GRTDD 441

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A + +E+M       P + TF++++       +  +A  +  EM++ G  P      +++
Sbjct: 442 AVQFYEEM-IQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVV 500

Query: 454 QCYGKA---QRTDDVVRALN 470
             Y +A   Q+ D++   L 
Sbjct: 501 SAYCRAGMIQKADELASELR 520



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 4/236 (1%)

Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
           +P  L ++ +I    RAG +  A G+Y R  N+    D   ++ L+     A      + 
Sbjct: 2   NPGTLLHNVVIGGLCRAGRLRHALGVY-RQMNDAHPPDFLTYTKLVHGLSKARRLRDAVQ 60

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           V +EM +    P+  T   ++ ++    R    + + +EM   G++ N  TY++L+    
Sbjct: 61  VLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLC 120

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           +    ++ +++   M E+G   +V  YN+++         DEA    E M  +E C PD 
Sbjct: 121 KCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQM-VAEGCHPDI 179

Query: 412 WTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            T++++I   C  R  V     +  E+   GF P++   +++I    KA R  D V
Sbjct: 180 ITYTALIGGFCKSR-DVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAV 234


>gi|255661208|gb|ACU25773.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 426

 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 186/380 (48%), Gaps = 14/380 (3%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDTA---ALALTYFTNKLKAS--KEVILYNVT 171
           DD  S L+ +  D +  D V+  N +         + A++ F+   +A    +++ YN  
Sbjct: 26  DDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRAGIKPDLVAYNSM 85

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
           + VF K +   +A  L  +M + GV PD V++STL++    N    +A+  F  M    C
Sbjct: 86  INVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKC 145

Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGC 289
             D  T + MID YG+    + A  L+   R  K  I+PN  +++TL+++YG A  F   
Sbjct: 146 LLDLTTCNIMIDVYGQLDMAKEADKLFWSMR--KVGIEPNVVSYNTLLRVYGDAELFGEA 203

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           ++++  M+   ++ N++TYN ++   G+     +   + +EM + G+ PN  TY++++  
Sbjct: 204 IHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNRGIEPNAITYSTIISI 263

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
           +G+    +    ++++++  G+++   LY T++      G    A  +  ++K     +P
Sbjct: 264 WGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHAKRLLHELK-----RP 318

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           D+    + I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++  +VV   
Sbjct: 319 DNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIDLFSKYKKYPNVVEVF 378

Query: 470 NRLPELGITPDDRFCGCLLN 489
            ++  LG   D      +LN
Sbjct: 379 EKMRGLGYFSDSNVISLVLN 398



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 148/305 (48%), Gaps = 10/305 (3%)

Query: 185 ERLFDDML--------DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           E LFDD L        DR V  D V +S LI  +R     +KA+  F R+   G  PD +
Sbjct: 22  EGLFDDALSWLQKMEQDR-VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRAGIKPDLV 80

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            Y+SMI+ +G+A     A  L    R      D  ++STL+ +Y     F   L+V+ EM
Sbjct: 81  AYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVENQKFLEALSVFAEM 140

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           + I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LLR YG A   
Sbjct: 141 REIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYNTLLRVYGDAELF 200

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            + + ++R M+ K ++ +V  YNT++ +       ++A  + ++M  +   +P++ T+S+
Sbjct: 201 GEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEM-HNRGIEPNAITYST 259

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R L+ L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHAKRLLHELKRPD 319

Query: 477 ITPDD 481
             P D
Sbjct: 320 NIPRD 324



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 36/222 (16%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             +   G+ P+   Y S++  +G+A+   +  S+  EM+E G                  
Sbjct: 68  SRLKRAGIKPDLVAYNSMINVFGKAKLFREARSLISEMREAG------------------ 109

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
                               PD+ ++S+++T+     K  EA ++F EM E     +L  
Sbjct: 110 ------------------VVPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCLLDLTT 151

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
              +I  YG+     +  +    + ++GI P+      LL V
Sbjct: 152 CNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYNTLLRV 193



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 20/187 (10%)

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           +E+ +      Y+TL+      G  D+A    + M+  +    D   +S++I +      
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQ-DRVPGDLVLYSNLIELSRKLCD 59

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            S+A ++F+ +  AG +P+L    S+I  +GKA+   +    ++ + E G+ PD      
Sbjct: 60  YSKAISIFSRLKRAGIKPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYST 119

Query: 487 LLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQ------DIEG--DFKKEATE 536
           LL +  +  K  E L    E  E         +K LL+        D+ G  D  KEA +
Sbjct: 120 LLTMYVENQKFLEALSVFAEMRE---------IKCLLDLTTCNIMIDVYGQLDMAKEADK 170

Query: 537 LFNSISK 543
           LF S+ K
Sbjct: 171 LFWSMRK 177



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 46/232 (19%), Positives = 81/232 (34%), Gaps = 52/232 (22%)

Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEV--------------- 165
           ++LR  GD  L  + + +   M   D     +TY T  +   K +               
Sbjct: 189 TLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNR 248

Query: 166 ------ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI------------ 207
                 I Y+  + ++ K   LD+A  LF  +   GV+ D+V + T+I            
Sbjct: 249 GIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHA 308

Query: 208 -----SCARMNNLPN--------------KAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
                   R +N+P               +A   F +    G   D   +  MID + + 
Sbjct: 309 KRLLHELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIDLFSKY 368

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
                   ++++ R   +  D N  S ++  YG    FD   ++Y  M+  G
Sbjct: 369 KKYPNVVEVFEKMRGLGYFSDSNVISLVLNAYGKLHEFDKANDMYMGMQDEG 420


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 161/356 (45%), Gaps = 44/356 (12%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +  +     ++ A  +FD M  RGVKPD+ T+ + IS         +A    E
Sbjct: 226 VVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLE 285

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M   G  P A+TY+++ID Y   GN+EMAF   D+   E      + ++ LI       
Sbjct: 286 KMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDC 345

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D    + +EM   G+ P+ +TYN L++   R     +  T++ EM   G+ P   TY 
Sbjct: 346 KMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYT 405

Query: 345 SL---LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAF----- 395
           SL   L   GR +  +D   ++ ++  KG+   + ++N L+   CA+ G  D AF     
Sbjct: 406 SLIYVLSKRGRMKQADD---LFEKIVRKGIFPDLIMFNALIDGHCAN-GNMDRAFAMLKE 461

Query: 396 ------------------------------EIFEDMKSSENCQPDSWTFSSMITICSCRG 425
                                         E+ E+MK S   +PD  +++++I+  S RG
Sbjct: 462 MDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMK-SRGIKPDHISYNTLISGYSKRG 520

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
            + +A  + +EML  GF P L    +LIQ   K +  D   + L  +   GITP+D
Sbjct: 521 DMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPND 576



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 157/344 (45%), Gaps = 3/344 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  + +F K    +KA  L+ +M    +K   VTF+ +I+         KA E+   M +
Sbjct: 160 NDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEA 219

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  P+ +TY+++I  Y   G VE A  ++D  +    + D   + + I      G  + 
Sbjct: 220 LGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEE 279

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
              + E+MK IG++P  +TYN L+D                +M   GL P  +TY  L+ 
Sbjct: 280 ASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIH 339

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A       ++   + +EM EKG+      YN L+      G   +AF + ++M  S+  Q
Sbjct: 340 ALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEM-ISKGIQ 398

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           P   T++S+I + S RG++ +A+ +F +++  G  P+L +  +LI  +      D     
Sbjct: 399 PTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAM 458

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSK 512
           L  + ++ + PD+     L+    +  K E  +  E +E+  S+
Sbjct: 459 LKEMDQMKVVPDEVTFNTLMQGRCREGKVEAAR--ELIEEMKSR 500



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 151/325 (46%), Gaps = 5/325 (1%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNL 215
           +++    V+ +N+ + V  K   L KA+     M   G+KP+ VT++T+I   C+R    
Sbjct: 184 RMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSR--GR 241

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
              A   F+ M   G  PD+ TY S I    + G +E A G+ ++ +    R     ++T
Sbjct: 242 VEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNT 301

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LI  Y   GN +   +  ++M   G+ P + TYN L+  +    +  +   I KEM++ G
Sbjct: 302 LIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKG 361

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           L P+  TY  L+  Y R    +   +++ EM  KG+Q +   Y +L+ + +  G   +A 
Sbjct: 362 LVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQAD 421

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           ++FE +   +   PD   F+++I      G +  A AM  EM +    P+     +L+Q 
Sbjct: 422 DLFEKI-VRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQG 480

Query: 456 YGKAQRTDDVVRALNRLPELGITPD 480
             +  + +     +  +   GI PD
Sbjct: 481 RCREGKVEAARELIEEMKSRGIKPD 505



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 111/223 (49%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN+ +  + +C ++ KA  L D+M+ +G++P  VT+++LI          +A + FE+
Sbjct: 367 VTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEK 426

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +   G  PD + ++++ID +   GN++ AF +       K   D   F+TL++     G 
Sbjct: 427 IVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGK 486

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    + EEMK+ G+KP+ I+YN L+    +         +  EM   G +P   TY +
Sbjct: 487 VEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNA 546

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           L++   +   G+    + +EM  KG+  +   Y +L+    +V
Sbjct: 547 LIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIGNV 589



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 126/253 (49%), Gaps = 5/253 (1%)

Query: 168 YNVTMK-VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFER 225
           YN+ +  +F  C+ +D+A+ +  +M ++G+ PD+VT++ LI+   R  N+  KA    + 
Sbjct: 334 YNMLIHALFLDCK-MDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNV-KKAFTLHDE 391

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S G  P  +TY+S+I    + G ++ A  L+++   +    D   F+ LI  +   GN
Sbjct: 392 MISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGN 451

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D    + +EM  + V P+ +T+N L+    R  +    + + +EM   G+ P+  +Y +
Sbjct: 452 MDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNT 511

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  Y +    +D   V  EM   G   ++  YN L+         D A ++ ++M  S+
Sbjct: 512 LISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEM-ISK 570

Query: 406 NCQPDSWTFSSMI 418
              P+  T+ S+I
Sbjct: 571 GITPNDNTYLSLI 583



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 108/261 (41%), Gaps = 1/261 (0%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A E F+ M   G  P     + M+  + ++   E A+ LY      + +     F+ +I 
Sbjct: 140 AFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMIN 199

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
           +    G           M+A+G+KPN++TYN ++       R    + I+  M   G+ P
Sbjct: 200 VLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKP 259

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  TY S +    +    E+   +  +MKE G++ +   YNTL+    + G  + AF+ +
Sbjct: 260 DSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFD-Y 318

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
            D    E   P   T++ +I       K+ EA+ +  EM E G  P+      LI  Y +
Sbjct: 319 RDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCR 378

Query: 459 AQRTDDVVRALNRLPELGITP 479
                      + +   GI P
Sbjct: 379 CGNVKKAFTLHDEMISKGIQP 399



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 103/236 (43%), Gaps = 1/236 (0%)

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           AF  +D  + +      +A + ++ L+  +   +    +Y EM  + +K +++T+N +++
Sbjct: 140 AFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMIN 199

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
            + +  +  + K     M   G+ PN  TY +++  Y      E    ++  MK +G++ 
Sbjct: 200 VLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKP 259

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
               Y + ++     G  +EA  + E MK     +P + T++++I     +G +  A   
Sbjct: 260 DSYTYGSFISGMCKEGKLEEASGMLEKMKEI-GLRPTAVTYNTLIDGYCNKGNLEMAFDY 318

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
            ++M+  G  P +     LI       + D+    +  + E G+ PD      L+N
Sbjct: 319 RDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILIN 374


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic; AltName: Full=Protein PROTON GRADIENT
            REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 153/341 (44%), Gaps = 37/341 (10%)

Query: 177  KCRDLDKAERLFDDML-DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
            K  ++  A  LF+    D GV+P   T++ LI      ++   A + F ++ S GC PD 
Sbjct: 761  KHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDV 820

Query: 236  LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
             TY+ ++DAYG++G ++  F LY      +   +    + +I     AGN D  L++Y +
Sbjct: 821  ATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYD 880

Query: 296  -MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
             M      P   TY  L+D + ++ R ++ K +++ M D G  PN   Y  L+  +G+A 
Sbjct: 881  LMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAG 940

Query: 355  YGE-----------------------------------DTLSVYREMKEKGMQLSVTLYN 379
              +                                   + L  ++E+KE G+   V  YN
Sbjct: 941  EADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYN 1000

Query: 380  TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
             ++         +EA  +F +MK+S    PD +T++S+I      G V EA  ++NE+  
Sbjct: 1001 LIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQR 1060

Query: 440  AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            AG EPN+F   +LI+ Y  + + +        +   G +P+
Sbjct: 1061 AGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPN 1101



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 154/347 (44%), Gaps = 36/347 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  M    K RD+D    L  +M   G+KP+  TF+  I         N+A E  +RM 
Sbjct: 226 YSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMD 285

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID------------------ 269
             GC PD +TY+ +IDA   A  ++ A  ++++ +  + + D                  
Sbjct: 286 DEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLD 345

Query: 270 ---------------PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
                          P+   F+ L+     AGNF    +  + M+  G+ PN+ TYN L+
Sbjct: 346 SVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLI 405

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
             + R  R      ++  M   G+ P   TY   +  YG++      L  + +MK KG+ 
Sbjct: 406 CGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIA 465

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            ++   N  L   A  G   EA +IF  +K      PDS T++ M+   S  G++ EA  
Sbjct: 466 PNIVACNASLYSLAKAGRDREAKQIFYGLKDI-GLVPDSVTYNMMMKCYSKVGEIDEAIK 524

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           + +EM+E G EP++ V+ SLI    KA R D+  +   R+ E+ + P
Sbjct: 525 LLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 571



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 158/352 (44%), Gaps = 36/352 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y V +      R LD A+ +F+ M     KPD VT+ TL+     N   +   +++
Sbjct: 292 DVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFW 351

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN-------------------- 263
             M   G  PD +T++ ++DA  +AGN   AF   D  R+                    
Sbjct: 352 SEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRV 411

Query: 264 -------------EKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
                        E   + P A++    I  YG +G+    L  +E+MK  G+ PN++  
Sbjct: 412 HRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVAC 471

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N  L ++ +A R  + K I+  + D GL P+  TY  +++ Y +    ++ + +  EM E
Sbjct: 472 NASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMME 531

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G +  V + N+L+         DEA+++F  MK  +  +P   T+++++      GK+ 
Sbjct: 532 NGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMK-LKPTVVTYNTLLAGLGKNGKIQ 590

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           EA  +F  M++ G  PN     +L  C  K       ++ L ++ ++G  PD
Sbjct: 591 EAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPD 642



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 145/316 (45%), Gaps = 7/316 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  + +  K R   +A  ++  M+  G +P   T+S+L+         +  +   + M 
Sbjct: 191 YNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEME 250

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  P+  T++  I   GRAG +  A+ +  R  +E    D   ++ LI    TA   D
Sbjct: 251 TLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLD 310

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V+E+MK    KP+ +TY  LLD     +    VK  + EM  +G  P+  T+  L+
Sbjct: 311 CAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILV 370

Query: 348 RAYGRA-RYGE--DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            A  +A  +GE  DTL V   M+++G+  ++  YNTL+     V   D+A E+F +M+S 
Sbjct: 371 DALCKAGNFGEAFDTLDV---MRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESL 427

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              +P ++T+   I      G    A   F +M   G  PN+    + +    KA R  +
Sbjct: 428 -GVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDRE 486

Query: 465 VVRALNRLPELGITPD 480
             +    L ++G+ PD
Sbjct: 487 AKQIFYGLKDIGLVPD 502



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 136/311 (43%), Gaps = 1/311 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  ++  R    L++   +FD M  R +K D  T+ T+     +     +A     +M  
Sbjct: 122 NYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMRE 181

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
           FG   +A +Y+ +I    ++     A  +Y R   E +R     +S+L+   G   + D 
Sbjct: 182 FGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDS 241

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            + + +EM+ +G+KPN+ T+   +  +GRA +  +   I K M D G  P+  TY  L+ 
Sbjct: 242 VMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLID 301

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A   AR  +    V+ +MK    +     Y TLL   +D    D   + + +M+   +  
Sbjct: 302 ALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHV- 360

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD  TF+ ++      G   EA    + M + G  PNL    +LI    +  R DD +  
Sbjct: 361 PDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEL 420

Query: 469 LNRLPELGITP 479
              +  LG+ P
Sbjct: 421 FGNMESLGVKP 431



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 161/374 (43%), Gaps = 41/374 (10%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I +N       K  ++  A ++   M+D G  PD  T++T+I     N    +A+ +F +
Sbjct: 609 ITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQ 668

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY--------DRARNEKWR---------- 267
           M      PD +T  +++    +A  +E A+ +         D+  N  W           
Sbjct: 669 MKKL-VYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEA 727

Query: 268 -IDPNAFS-------------------TLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMI 306
            ID NA S                    +I+      N  G   ++E+  K +GV+P + 
Sbjct: 728 GID-NAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLP 786

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TYN L+  +  A      + ++ ++   G  P+  TY  LL AYG++   ++   +Y+EM
Sbjct: 787 TYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEM 846

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
                + +   +N +++     G  D+A +++ D+ S  +  P + T+  +I   S  G+
Sbjct: 847 STHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR 906

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
           + EA+ +F  ML+ G  PN  +   LI  +GKA   D       R+ + G+ PD +    
Sbjct: 907 LYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSV 966

Query: 487 LLNVMTQTPKEELG 500
           L++ +    + + G
Sbjct: 967 LVDCLCMVGRVDEG 980



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 3/182 (1%)

Query: 167  LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
            +YN+ +  F K  + D A  LF  M+  GV+PD  T+S L+ C  M    ++ + +F+ +
Sbjct: 928  IYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKEL 987

Query: 227  PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAG 284
               G +PD + Y+ +I+  G++  +E A  L++  +  +  I P+   +++LI   G AG
Sbjct: 988  KESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRG-ITPDLYTYNSLILNLGIAG 1046

Query: 285  NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
              +    +Y E++  G++PN+ T+N L+     + +P     +Y+ M   G SPN  TY 
Sbjct: 1047 MVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYE 1106

Query: 345  SL 346
             L
Sbjct: 1107 QL 1108



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 37/253 (14%)

Query: 166  ILYNVTMKVFRKCRDLDKAERLFDDML-DRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
            I +N+ +    K  ++D A  L+ D++ DR   P   T+  LI     +    +A + FE
Sbjct: 856  ITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFE 915

Query: 225  RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
             M  +GC P+   Y+ +I+ +G+AG  + A  L+ R   E  R D   +S L+      G
Sbjct: 916  GMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVG 975

Query: 285  NFDGCLNVYEEMK------------------------------------AIGVKPNMITY 308
              D  L+ ++E+K                                    + G+ P++ TY
Sbjct: 976  RVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTY 1035

Query: 309  NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
            N+L+  +G A    +   IY E+   GL PN  T+ +L+R Y  +   E   +VY+ M  
Sbjct: 1036 NSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVT 1095

Query: 369  KGMQLSVTLYNTL 381
             G   +   Y  L
Sbjct: 1096 GGFSPNTGTYEQL 1108



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 129/292 (44%), Gaps = 8/292 (2%)

Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
           T + ++   R++    +    F+ M       D  TY ++  +    G ++ A     + 
Sbjct: 120 TCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKM 179

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
           R   + ++  +++ LI L   +      + VY  M   G +P++ TY++L+  +G+ +  
Sbjct: 180 REFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDI 239

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
             V  + KEM   GL PN  T+   +R  GRA    +   + + M ++G    V  Y  L
Sbjct: 240 DSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVL 299

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           +         D A E+FE MK+  + +PD  T+ +++   S    +   +  ++EM + G
Sbjct: 300 IDALCTARKLDCAKEVFEKMKTGRH-KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDG 358

Query: 442 FEPNLFVLTSLIQC------YGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
             P++   T L+        +G+A  T DV+R    LP L  T +   CG L
Sbjct: 359 HVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLH-TYNTLICGLL 409



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/357 (19%), Positives = 148/357 (41%), Gaps = 38/357 (10%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D  A  + Y    +    + + YN+ MK + K  ++D+A +L  +M++ G +PD +  ++
Sbjct: 484 DREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNS 543

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           LI+     +  ++A + F RM      P  +TY++++   G+ G ++ A  L++    + 
Sbjct: 544 LINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG 603

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
              +   F+TL             L +  +M  +G  P++ TYN ++  + +  +  +  
Sbjct: 604 CPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAM 663

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE-------------------- 365
             + +M    + P++ T  +LL    +A   ED   +                       
Sbjct: 664 CFFHQMK-KLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGS 722

Query: 366 -MKEKGMQLSVTLYNTLLA--MCAD--------VGYT------DEAFEIFEDMKSSENCQ 408
            + E G+  +V+    L+A  +C D        + Y+        A  +FE        Q
Sbjct: 723 ILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQ 782

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           P   T++ +I        +  A+ +F ++   G  P++     L+  YGK+ + D++
Sbjct: 783 PKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDEL 839



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 137  IILNNMTNPDTAALALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
            I++N       A  A   F   +K     ++  Y+V +        +D+    F ++ + 
Sbjct: 931  ILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKES 990

Query: 195  GVKPDNVTFSTLISCARMNNLPNKAVEWFERMP-SFGCDPDALTYSSMIDAYGRAGNVEM 253
            G+ PD V ++ +I+    ++   +A+  F  M  S G  PD  TY+S+I   G AG VE 
Sbjct: 991  GLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEE 1050

Query: 254  AFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
            A  +Y+    ++  ++PN F+   LI+ Y  +G  +    VY+ M   G  PN  TY  L
Sbjct: 1051 AGKIYNEI--QRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108


>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 687

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 150/319 (47%), Gaps = 1/319 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  VI YN  +    K     +A  L  +M   G+ P  +++++  +   +N    +A+E
Sbjct: 319 SPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALE 378

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + MP+ G  P+ ++Y+S +DA  + G  E A  L           D  +F++ I   G
Sbjct: 379 LLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACG 438

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
               ++  + +  EM   G+ PN+ITYN+ ++  GR+ R  +   +++EM   GLSPN  
Sbjct: 439 RGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVV 498

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY S++ A  +    E  + +   M  +G+   V  YN+ +  C      + A ++ + M
Sbjct: 499 TYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVISYNSAIEACGKGEQWELALQLLKGM 558

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
            +    +PD  +++S +T C+  G+  EA  +  +M   G  PN     + I   GK ++
Sbjct: 559 PT-RGPKPDIISYNSAVTACAKSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQ 617

Query: 462 TDDVVRALNRLPELGITPD 480
            D  VR L  +   G TP+
Sbjct: 618 WDVAVRILKEMQTHGATPN 636



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 149/320 (46%), Gaps = 3/320 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           + +V+ YN  +          +A  L + M+ +GV P+ +T+++ I          +A++
Sbjct: 179 TPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMD 238

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             E +   G  P   TY+ +IDA  + G    A  L  +        D  ++S++I   G
Sbjct: 239 LLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACG 298

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
               +   +++ E+M+  GV PN+I+YN+ +D   +  R  +   + +EMT  GL P   
Sbjct: 299 RGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVI 358

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           +Y S   A        + L + +EM  +G+  +   YN+ L  CA  G  ++A ++   M
Sbjct: 359 SYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGM 418

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSE-AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
            S+    PD  +F+S I  C  RG+  E A  +  EM  AG  PN+    S I+  G++ 
Sbjct: 419 -STVGSDPDIISFNSAIDACG-RGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSA 476

Query: 461 RTDDVVRALNRLPELGITPD 480
           R  + +     +P  G++P+
Sbjct: 477 RWQEAMGLFREMPTRGLSPN 496



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 150/320 (46%), Gaps = 9/320 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF-STLISCARMNNLPNKAVEWF 223
           VI YN             +A  L  +M  +G+ P+ +++ S L +CA+      KAV+  
Sbjct: 357 VISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQW-EKAVKLL 415

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYG 281
             M + G DPD ++++S IDA GR    E A  L          + PN   +++ I+  G
Sbjct: 416 RGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLREMPTAG--LTPNVITYNSAIEACG 473

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT-IYKEMTDNGLSPNW 340
            +  +   + ++ EM   G+ PN++TYN+++D   + ++ W++   +   M   G++P+ 
Sbjct: 474 RSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQ-WELAVQLLTGMPARGVAPDV 532

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            +Y S + A G+    E  L + + M  +G +  +  YN+ +  CA  G   EA  + +D
Sbjct: 533 ISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTACAKSGRWREALGLLKD 592

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M ++    P++ ++ + I  C    +   A  +  EM   G  PNL   ++ I    K  
Sbjct: 593 M-ATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGATPNLITYSAAIDACAKQG 651

Query: 461 RTDDVVRALNRLPELGITPD 480
           R  + V  L  L   G+TPD
Sbjct: 652 RWKEAVDLLTDLRRQGLTPD 671



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 154/321 (47%), Gaps = 3/321 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDML--DRGVKPDNVTFSTLISCARMNNLPNKA 219
           + +V+ YN  +    K     +A  L   M+    G+ PD VT+++ I+         +A
Sbjct: 142 TPDVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEA 201

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           ++  E+M + G  P+ +TY+S I A  +    E A  L +    + +      ++ +I  
Sbjct: 202 MDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDA 261

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
               G +   +++  +M    +  ++I+Y++++   GR +R  +   + ++M   G+SPN
Sbjct: 262 CAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPN 321

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             +Y S + A  +    ++ L + REM   G+  +V  YN+  A CA  G   EA E+ +
Sbjct: 322 VISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALELLK 381

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +M  ++   P++ +++S +  C+  G+  +A  +   M   G +P++    S I   G+ 
Sbjct: 382 EMP-AQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACGRG 440

Query: 460 QRTDDVVRALNRLPELGITPD 480
           Q+ +  V  L  +P  G+TP+
Sbjct: 441 QQWETAVELLREMPTAGLTPN 461



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 139/341 (40%), Gaps = 38/341 (11%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K RD   A    D+    G   D  +++  I+          AV     MP+ G  PD +
Sbjct: 87  KGRDWRTALAALDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDVV 146

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYE 294
           TY+S I A  + G  + A  L  +       I P+   +++ I      G +   +++ E
Sbjct: 147 TYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLE 206

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT------------ 342
           +M A GV PN+ITYN+ +    + +R  +   + +E+ + G  P+  T            
Sbjct: 207 QMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGG 266

Query: 343 -----------------------YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
                                  Y+S++ A GR R  ++ + +  +M+ +G+  +V  YN
Sbjct: 267 RWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYN 326

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
           + +  CA      EA ++  +M ++    P   +++S    C+  G+  EA  +  EM  
Sbjct: 327 SAIDACAKGDRWKEALDLLREM-TTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPA 385

Query: 440 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            G  PN     S +    K  + +  V+ L  +  +G  PD
Sbjct: 386 QGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPD 426



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 132/290 (45%), Gaps = 38/290 (13%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFE 224
           I YN  +    K    +KA +L   M   G  PD ++F++ I +C R       AVE   
Sbjct: 393 ISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQW-ETAVELLR 451

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR--------------------ARNE 264
            MP+ G  P+ +TY+S I+A GR+   + A GL+                      A+ E
Sbjct: 452 EMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGE 511

Query: 265 KWRI---------------DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
           +W +               D  ++++ I+  G    ++  L + + M   G KP++I+YN
Sbjct: 512 QWELAVQLLTGMPARGVAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYN 571

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
           + +    ++ R  +   + K+M   GL+PN  +Y + + A G+    +  + + +EM+  
Sbjct: 572 SAVTACAKSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTH 631

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           G   ++  Y+  +  CA  G   EA ++  D++  +   PD+ T+ ++I+
Sbjct: 632 GATPNLITYSAAIDACAKQGRWKEAVDLLTDLR-RQGLTPDAQTYLTVIS 680



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 3/173 (1%)

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           LL+  GR  R         E   +G S +  +Y   + A    R     + + REM  +G
Sbjct: 83  LLEAKGRDWR--TALAALDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREMPTEG 140

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS-SENCQPDSWTFSSMITICSCRGKVSE 429
           +   V  YN+ +A C+  G   EA ++   M + +E   PD  T++S I  CS  G+  E
Sbjct: 141 VTPDVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKE 200

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           A  +  +M+  G  PNL    S I    K +R ++ +  L  + E G  P  R
Sbjct: 201 AMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTR 253



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I YN  +    K     +A  L  DM   G+ P+ V++   I         + AV   
Sbjct: 566 DIISYNSAVTACAKSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRIL 625

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           + M + G  P+ +TYS+ IDA  + G  + A  L    R +    D   + T+I  +
Sbjct: 626 KEMQTHGATPNLITYSAAIDACAKQGRWKEAVDLLTDLRRQGLTPDAQTYLTVISAF 682


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 186/372 (50%), Gaps = 9/372 (2%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I++N         LAL      +K   E  ++  +  +  +   + + +A  L D M   
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G +P+ VTF+TLI    ++N  ++AV   +RM + GC PD +TY  +++   + G+ ++A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 255 FGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
           F L ++   E+ +++P    ++T+I       + D  LN+++EM+  G++PN++TY++L+
Sbjct: 241 FILLNKM--EQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLI 298

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
             +    R      +  +M +  ++P+  T+++L+ A+ +     +   +Y EM ++ + 
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 358

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAE 431
            S+  Y++L+         DEA ++FE M  S++C PD  ++S++I   C  + +V E  
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFM-VSKHCFPDVVSYSTLIKGFCKAK-RVDEGM 416

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            +F EM + G   N    T+LIQ   +A   D        +   G+ P+      LL+ +
Sbjct: 417 ELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 476

Query: 492 TQTPKEELGKLV 503
            +  K E   +V
Sbjct: 477 CKNGKLEKAMVV 488



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 147/283 (51%), Gaps = 1/283 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K + +V  ++  +  F K   L +AE+L+D+M+ R + P  VT+S+LI+   M++  ++A
Sbjct: 321 KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEA 380

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
            + FE M S  C PD ++YS++I  + +A  V+    L+          +   ++TLI+ 
Sbjct: 381 KQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQG 440

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
              AG+ D    +++EM + GV PN++TYN LLD + +  +  +   +++ +  + + P 
Sbjct: 441 LFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 500

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY  ++    +A   ED   ++  +  KG++  V  YNT+++     G  +EA  +F+
Sbjct: 501 IYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFK 560

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
           +MK  +   P+S  ++++I      G    +  +  EM   GF
Sbjct: 561 EMK-EDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGF 602



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 174/395 (44%), Gaps = 44/395 (11%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           +++N +       LA     NK++  K    V++Y   +    K + +D A  LF +M  
Sbjct: 226 VVVNGLCKRGDTDLAFILL-NKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMET 284

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           +G++P+ VT+S+LISC       + A      M     +PD  T+S++IDA+ + G +  
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344

Query: 254 AFGLYDRARNEKWRIDPN-------------------------------------AFSTL 276
           A  LYD     K  IDP+                                     ++STL
Sbjct: 345 AEKLYDEM--VKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTL 402

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           IK +  A   D  + ++ EM   G+  N +TY  L+  + +A      + I+KEM  +G+
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            PN  TY +LL    +    E  + V+  ++   M+ ++  YN ++      G  ++ ++
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           +F ++ S +  +PD   +++MI+    +G   EA+A+F EM E G  PN     +LI+  
Sbjct: 523 LFCNL-SLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRAR 581

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            +    +     +  +   G   D    G + N++
Sbjct: 582 LRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 616



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 159/333 (47%), Gaps = 3/333 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+AL     K +    +I ++  +    K    D    L + M + G+  ++ T+S LI+
Sbjct: 65  AVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILIN 124

Query: 209 C-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           C  R + LP  A+    +M   G +P+ +T SS+++ Y  +  +  A  L D+     ++
Sbjct: 125 CFCRRSQLP-LALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQ 183

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            +   F+TLI            + + + M A G +P+++TY  +++ + +         +
Sbjct: 184 PNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFIL 243

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
             +M    L P    Y +++    + ++ +D L++++EM+ KG++ +V  Y++L++   +
Sbjct: 244 LNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCN 303

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G   +A  +  DM       PD +TFS++I      GK+ EAE +++EM++   +P++ 
Sbjct: 304 YGRWSDASRLLSDM-IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIV 362

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             +SLI  +    R D+  +    +      PD
Sbjct: 363 TYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 395



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 115/232 (49%), Gaps = 1/232 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y+  +K F K + +D+   LF +M  RG+  + VT++TLI         + A E F
Sbjct: 395 DVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIF 454

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M S G  P+ +TY++++D   + G +E A  +++  +  K       ++ +I+    A
Sbjct: 455 KEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 514

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +   +++  +   GVKP+++ YN ++    R     +   ++KEM ++G  PN   Y
Sbjct: 515 GKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCY 574

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
            +L+RA  R    E +  + +EM+  G     +    +  M  D G  D++F
Sbjct: 575 NTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD-GRLDKSF 625


>gi|410110089|gb|AFV61124.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           macropoda]
          Length = 427

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 173/344 (50%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 70  AISIFS-RLKKSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLL 128

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 129 TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 186

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN++    G+     +  
Sbjct: 187 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMXMIYGKTLEHEKAN 246

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++   
Sbjct: 247 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAY 306

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG   +
Sbjct: 307 ERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKD 361

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 362 ITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 405



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 151/330 (45%), Gaps = 36/330 (10%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LFD+M  R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 62

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           +  +   A  ++ R +   +  D  A++ +I ++G A  F    ++  EMKA GV PN  
Sbjct: 63  KLCDYSKAISIFSRLKKSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTX 122

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTD--------------------------------- 333
           +Y+ LL      K+  +  +++ EM +                                 
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 182

Query: 334 --NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YN++  +       
Sbjct: 183 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMXMIYGKTLEH 242

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  +
Sbjct: 243 EKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQT 301

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +I  Y +A       R L+ L      P D
Sbjct: 302 MIVAYERAGLVAHAKRLLHELKRPDNIPRD 331



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 105/206 (50%), Gaps = 1/206 (0%)

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
           +GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++ 
Sbjct: 1   YGLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIEL 60

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
             +     +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  +
Sbjct: 61  SRKLCDYSKAISIFSRLKKSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPN 120

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
              Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F
Sbjct: 121 TXSYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLF 179

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQ 460
             M + G EPN+    +L++ YG A+
Sbjct: 180 WGMRKMGIEPNVVSYNTLLRVYGDAE 205



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN    ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 210 AIHLFRLMQRKNIEQNVVTYNSMXMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 269

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 270 IWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 325

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 326 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVF 385

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ +  A +L AYG+ +  +    VY EM+E G
Sbjct: 386 DKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 427


>gi|410110063|gb|AFV61111.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           barbata]
          Length = 364

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 164/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 21  DLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYSTLLTMYVENKKFLEALSVF 80

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 81  SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 138

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 139 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 198

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 199 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 258

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 259 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKK 313

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +V    +++  LG  PD      +LN
Sbjct: 314 YSNVXEVFDKMRGLGYFPDSNVIAVVLN 341



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 146 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 205

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 206 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 261

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 262 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVXEVF 321

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 322 DKMRGLGYFPDSNVIAVVLNAYGKLXEFDKANDVYMEMQEVG 363



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 130/278 (46%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 96  NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 155

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 156 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 213

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 214 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 272

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 273 LAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVXEVFDKMRGL-G 328

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   +    + +  GK+ E   A  ++ EM E G
Sbjct: 329 YFPDSNVIA---VVLNAYGKLXEFDKANDVYMEMQEVG 363



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            +S++  +K  G    +  YN ++ +        EA  +  +MK +    P++ ++S+++
Sbjct: 6   AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXA-GVMPNTTSYSTLL 64

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
           T+     K  EA ++F+EM E     +L     +I  YG+     +  +    + ++GI 
Sbjct: 65  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 124

Query: 479 PDDRFCGCLLNV 490
           P+      LL V
Sbjct: 125 PNVVSYNTLLRV 136


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 145/317 (45%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I Y   +  F K   +D+A +L D ML +G +P  VT+ +++      ++ N+A E  
Sbjct: 467 DTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVI 526

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M   GC+P    ++S++  Y   G  E A+ +           D   +++LI L  + 
Sbjct: 527 AQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFST 586

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G      +V++ M   G  P+ +TY  ++    +         I + M  +G+ P+   Y
Sbjct: 587 GRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAY 646

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            SL+  Y +    +    VY  M   G++ +   +N L+      G TD AF +F++M  
Sbjct: 647 NSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLE 706

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +   P   +++ +I      G+VSEA + F EM++ G  P     TSLI    KA R  
Sbjct: 707 KDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIP 766

Query: 464 DVVRALNRLPELGITPD 480
           +  + +  + +LG+ PD
Sbjct: 767 EAKKLVEDMVKLGVNPD 783



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 161/337 (47%), Gaps = 7/337 (2%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K +   + YN  M  + K   +D   +L   M++    PD  T++ L++     N  + A
Sbjct: 259 KVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDA 318

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           +E F+ + S+GC P+A TY+++I     A  +E A   +D A      +D  +++T+IK 
Sbjct: 319 LELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEA------LDVISYTTVIKG 372

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
              +   D    ++E++K  G  PN++ Y  ++D + +A R       +++M+ +   P 
Sbjct: 373 LADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPT 432

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY  ++    +A+   D   V+ +M +KG       Y TL+   +     DEA ++  
Sbjct: 433 RTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLL- 491

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           D+  ++  +P + T+ S++        ++EA+ +  +M E G EP LF+ TSL+  Y   
Sbjct: 492 DVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSK 551

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
            R ++  + L  +   G  PD      L++++  T +
Sbjct: 552 GRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGR 588



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 157/317 (49%), Gaps = 2/317 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+  N+ +    K R +DKA  LF +M   G +P  V+++T+IS     +  ++A ++F
Sbjct: 19  DVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFF 78

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   GC+PD + ++++I  + +AG  ++   L ++A  +++R D   ++++I  Y  A
Sbjct: 79  NSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQAL-KRFRPDVFLYTSVIHGYCKA 137

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+ D    + EEM A G  P+   Y  L+D + +  R  +   +++ M  +G   ++ T+
Sbjct: 138 GDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTF 197

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ A       ++   +YREM E+G +  + + ++L+      G  DEA EI++ + +
Sbjct: 198 MTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVA 257

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +         S M   C   G+V +   +  +M+E    P++     L+  + +A R D
Sbjct: 258 KKVATSRVAYNSLMDGYCKL-GRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLD 316

Query: 464 DVVRALNRLPELGITPD 480
           D +     L   G  P+
Sbjct: 317 DALELFKLLSSYGCKPN 333



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 142/276 (51%), Gaps = 8/276 (2%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAV 220
           + +VILY   + +      + +A  +FD M+++G  PD +T+ T+I + +++ N+   A 
Sbjct: 570 APDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNV-EAAG 628

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E  E M   G  PD   Y+S++D Y +   V+ AFG+YDR       I PNA +  + ++
Sbjct: 629 EILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASG--IKPNAVTFNVLMH 686

Query: 281 G--TAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           G    G  D   ++++EM +   V P +++Y  L+D +G+A R  +  + ++EM D G+ 
Sbjct: 687 GLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGII 746

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P  +TY SL+ +  +A    +   +  +M + G+   V  Y+ L+    D    D A+++
Sbjct: 747 PECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDV 806

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           F++M     C P+  T+  +       G+  + EA+
Sbjct: 807 FQEMM-KRGCAPNEVTYKVLRRGFRAAGRALDLEAV 841



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 137/285 (48%), Gaps = 2/285 (0%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           ++A ++  +M  RG  PD + +++LI          +A   F+ M   GC PDALTY ++
Sbjct: 555 EEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTI 614

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I  + + GNVE A  + +         D  A+++L+  Y      D    VY+ M A G+
Sbjct: 615 IQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGI 674

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTL 360
           KPN +T+N L+  + +  +  +  +++KEM + + + P   +Y  L+   G+A    +  
Sbjct: 675 KPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAF 734

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
           S ++EM ++G+      Y +L+   A  G   EA ++ EDM       PD   +S++IT 
Sbjct: 735 SQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDM-VKLGVNPDVQAYSALITG 793

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
                 V  A  +F EM++ G  PN      L + +  A R  D+
Sbjct: 794 LIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALDL 838



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 138/317 (43%), Gaps = 1/317 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI Y   +K     + +D+A  LF+ +   G  P+ V ++ +I            ++ F
Sbjct: 362 DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNF 421

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M    C P   TY+ +ID   +A  +  A  ++++   +    D   ++TLI  +  A
Sbjct: 422 EDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKA 481

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D    + + M   G +P  +TY +++    +     + K +  +M + G  P    +
Sbjct: 482 SKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIF 541

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            SLL  Y      E+   V  EM  +G    V LY +L+ +    G   EA  +F+ M  
Sbjct: 542 TSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSM-I 600

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            + C PD+ T+ ++I   S  G V  A  +   M ++G  P+ F   SL+  Y K +R D
Sbjct: 601 EKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVD 660

Query: 464 DVVRALNRLPELGITPD 480
                 +R+   GI P+
Sbjct: 661 QAFGVYDRMVASGIKPN 677



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 167/383 (43%), Gaps = 43/383 (11%)

Query: 134 DCVIILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDM 191
           +C I+LN +        A+  F     +     ++ YN  +        +D+A + F+ M
Sbjct: 22  NCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSM 81

Query: 192 LDRGVKPDNVTFSTLISCARMNNLP-------NKAVEWF--------------------- 223
           +D G +PD + F+TLI        P       N+A++ F                     
Sbjct: 82  IDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFLYTSVIHGYCKAGDLD 141

Query: 224 ------ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
                 E M + GC PDA  Y  +ID   + G V+ A+ L++R R      D   F TLI
Sbjct: 142 TGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLI 201

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           +     G  D    +Y EM   G +P +   ++L+  + +A +  +   IY+ +    ++
Sbjct: 202 EALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVA 261

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
            +   Y SL+  Y +    +D L +  +M E      +  YN L+A  +     D+A E+
Sbjct: 262 TSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALEL 321

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           F+ + SS  C+P++ T++++I       ++ EA+A F+E L      ++   T++I+   
Sbjct: 322 FK-LLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEAL------DVISYTTVIKGLA 374

Query: 458 KAQRTDDVVRALNRLPELGITPD 480
            ++R D+      +L   G +P+
Sbjct: 375 DSKRIDEACELFEKLKTAGCSPN 397


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 158/329 (48%), Gaps = 1/329 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  M    K RD++    L  +M   G++P+  TF+  I         ++A    +RM 
Sbjct: 230 YSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMD 289

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC PD +TY+ +IDA   AG +  A  L+ + +    + D   + TL+  +   G+ D
Sbjct: 290 DAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLD 349

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
                + EM+A G  P+++T+  L+D + +  +  +       M   G++PN +TY +L+
Sbjct: 350 AIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLI 409

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               R    ++ L ++  M+  G++ +   Y   +      G + +A + FE MK++   
Sbjct: 410 CGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTN-GI 468

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+    ++ +   + +G++ EA+  FN + + G  P+      L++CYGKA R DD ++
Sbjct: 469 VPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIK 528

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK 496
            L+ + E G  P+      L++ + +  +
Sbjct: 529 LLSEMEENGCDPEVVIINSLIDTLYKADR 557



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 136/252 (53%), Gaps = 1/252 (0%)

Query: 166  ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
            I +N+ +    K   LDKA  L+ D++     P   T+  LI          +A ++FE 
Sbjct: 859  ITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEE 918

Query: 226  MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
            M  +GC P+   Y+ +++ +G+ G+VE A  L+ R   E  R D  ++S ++      G 
Sbjct: 919  MLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGK 978

Query: 286  FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
             D  L+ +EE+K  G+ P+++ YN +++ +GR++R  +  +++ EM + G++P+  TY +
Sbjct: 979  VDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNA 1038

Query: 346  LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
            L+   G A   E+   +Y E++ KG++ +V  YN L+   +  G  D A+ +++ M    
Sbjct: 1039 LILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVG- 1097

Query: 406  NCQPDSWTFSSM 417
             C+P++ TF+ +
Sbjct: 1098 GCRPNTGTFAQL 1109



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 164/381 (43%), Gaps = 37/381 (9%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           C+ IL      D A   L    +      +V+ Y V +        L+ A+ LF  M   
Sbjct: 268 CIRILGRAGKIDEAYGILKRMDDA-GCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKAS 326

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
             KPD VT+ TL+     +   +   E++  M + G  PD +T++ +IDA  + G V+ A
Sbjct: 327 SHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEA 386

Query: 255 FGLYDRARNEKWRIDPNAFSTLI-----------------------------------KL 279
           FG  D  + +    + + ++TLI                                     
Sbjct: 387 FGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDY 446

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           YG +G     +  +E+MK  G+ PN++  N  L ++    R  + K  +  +   GL+P+
Sbjct: 447 YGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPD 506

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY  L+R YG+A   +D + +  EM+E G    V + N+L+         DEA+++F+
Sbjct: 507 AITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQ 566

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
            MK  +   P   T+++++      G+V EA A+F  M+     PN     +L+ C  K 
Sbjct: 567 RMKEMK-LAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKN 625

Query: 460 QRTDDVVRALNRLPELGITPD 480
              D  ++ L R+ E+   PD
Sbjct: 626 GEVDLALKMLFRMTEMNCFPD 646



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 142/312 (45%), Gaps = 1/312 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           + + +++  +   +D+A  +   M D G  PD VT++ LI         N A E F +M 
Sbjct: 265 FTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMK 324

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           +    PD +TY +++D +   G+++     +     + +  D   F+ LI      G  D
Sbjct: 325 ASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVD 384

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
                 + MK  GV PN+ TYN L+  + R  R  +   ++  M   GL     TY   +
Sbjct: 385 EAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFI 444

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YG++      +  + +MK  G+  ++   N  L   A+ G  +EA E F  +K     
Sbjct: 445 DYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKC-GL 503

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD+ T++ ++      G+V +A  + +EM E G +P + ++ SLI    KA R D+  +
Sbjct: 504 APDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWK 563

Query: 468 ALNRLPELGITP 479
              R+ E+ + P
Sbjct: 564 MFQRMKEMKLAP 575



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 155/321 (48%), Gaps = 10/321 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEW 222
           +V+ + + +    K   +D+A    D M  +GV P+  T++TLI    R+N L ++A+E 
Sbjct: 366 DVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRL-DEALEL 424

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F  M S G +  A TY   ID YG++G    A   +++ +     I PN  +    LY  
Sbjct: 425 FNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNG--IVPNIVACNASLYSL 482

Query: 283 A--GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           A  G  +     +  +K  G+ P+ ITYN L+   G+A R      +  EM +NG  P  
Sbjct: 483 AEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEV 542

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
               SL+    +A   ++   +++ MKE  +  +V  YNTLLA     G   EA  +F+ 
Sbjct: 543 VIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKG 602

Query: 401 MKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           M  +++C P++ +F++++  C C+ G+V  A  M   M E    P++    ++I    K 
Sbjct: 603 M-IADDCPPNTISFNTLLD-CLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKE 660

Query: 460 QRTDDVVRALNRLPELGITPD 480
            R +      +++ ++ I PD
Sbjct: 661 NRVNYAFWLFHQMKKV-IYPD 680



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 136/313 (43%), Gaps = 1/313 (0%)

Query: 168  YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
            YN  +    K R  + A  LF  M + G  PD  T++  +     +    +  + +E M 
Sbjct: 791  YNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEML 850

Query: 228  SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              GC P+ +T++ +I    ++ +++ A  LY    +  +   P  +  LI      G  +
Sbjct: 851  FRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLE 910

Query: 288  GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
                 +EEM   G  PN   YN L++  G+         +++ M   G+ P+  +Y+ ++
Sbjct: 911  EAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMV 970

Query: 348  RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
                     +D L  + E+K  G+   +  YN ++         +EA  +F++M+ +   
Sbjct: 971  DCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMR-NRGI 1029

Query: 408  QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
             PD +T++++I      G V EA  M+ E+   G EPN+F   +LI+ +  +   D    
Sbjct: 1030 TPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYA 1089

Query: 468  ALNRLPELGITPD 480
               ++   G  P+
Sbjct: 1090 VYKKMMVGGCRPN 1102



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 138/309 (44%), Gaps = 1/309 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +++ R  R ++    +F+ M  + +K    T+ T+     +     +A    E+M  
Sbjct: 126 NYVLEMLRAHRRVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRK 185

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G   +  +Y  +I    ++G    A  +Y R  +E  +     +S L+   G   + + 
Sbjct: 186 VGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIET 245

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            + + +EM+++G++PN+ T+   +  +GRA +  +   I K M D G  P+  TY  L+ 
Sbjct: 246 VMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLID 305

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A   A    +   ++ +MK    +     Y TLL   +D G  D   E + +M+ ++   
Sbjct: 306 ALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEME-ADGYL 364

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD  TF+ +I      GKV EA    + M + G  PNL    +LI    +  R D+ +  
Sbjct: 365 PDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALEL 424

Query: 469 LNRLPELGI 477
            N +  LG+
Sbjct: 425 FNSMESLGL 433



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 117/264 (44%), Gaps = 4/264 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF-STLISCARMNNLPNKAVEWFERM 226
           Y + +  + K  +  KA + F+ M   G+ P+ V   ++L S A    L  +A E+F  +
Sbjct: 440 YILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRL-EEAKEFFNGL 498

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G  PDA+TY+ ++  YG+AG V+ A  L           +    ++LI     A   
Sbjct: 499 KKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRV 558

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++ MK + + P ++TYN LL  +G+  R  +   ++K M  +   PN  ++ +L
Sbjct: 559 DEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTL 618

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L    +    +  L +   M E      V  YNT++         + AF +F  MK    
Sbjct: 619 LDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKKV-- 676

Query: 407 CQPDSWTFSSMITICSCRGKVSEA 430
             PD  T  +++      G++ +A
Sbjct: 677 IYPDYVTLCTLLPGVIKDGRIEDA 700



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 122/299 (40%), Gaps = 40/299 (13%)

Query: 204  STLISCARMNNLPNKAVE----WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD 259
            S LI   +      KAV+    + +   SF   P    Y+S+ID   +A   EMA+GL+ 
Sbjct: 753  SVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFY 812

Query: 260  RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
            + +N                                    G  P++ TYN  LD +G++ 
Sbjct: 813  KMKNA-----------------------------------GCTPDVFTYNLFLDALGKSG 837

Query: 320  RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
            +  ++  +Y+EM   G  PN  T+  ++    ++   +  + +Y ++       +   Y 
Sbjct: 838  KIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYG 897

Query: 380  TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
             L+     +G  +EA + FE+M     C P+   ++ ++     +G V  A  +F  M++
Sbjct: 898  PLIDGLLKLGRLEEAKQFFEEMLDY-GCMPNCPLYNILMNGFGKQGDVETACELFRRMVK 956

Query: 440  AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
             G  P+L   + ++ C     + DD +     L   G+ PD      ++N + ++ + E
Sbjct: 957  EGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVE 1015



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 70/129 (54%), Gaps = 4/129 (3%)

Query: 151  ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
            AL YF  +LK S    +++ YN+ +    + + +++A  LFD+M +RG+ PD  T++ LI
Sbjct: 982  ALHYF-EELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALI 1040

Query: 208  SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                +  +  +A + +E +   G +P+  TY+++I  +  +GN + A+ +Y +      R
Sbjct: 1041 LNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCR 1100

Query: 268  IDPNAFSTL 276
             +   F+ L
Sbjct: 1101 PNTGTFAQL 1109


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 151/310 (48%), Gaps = 8/310 (2%)

Query: 157 NKLKASKEVILYNVTMKVFRKC-RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
           N+   S  ++ YNV + V+ K  R  DK   L D+M  RG+  D  T ST++S      L
Sbjct: 249 NESGLSPSLVTYNVMLDVYGKMGRSWDKILELLDEMRSRGLDFDEFTCSTVLSACGREGL 308

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
            ++A E+F  + S G  P  +TY++++  +G+AG    A  +           D   ++ 
Sbjct: 309 IDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNE 368

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           ++  Y  AG  +    V + M + G+ PN +TY  +++  GR     +   ++ +M + G
Sbjct: 369 VVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELG 428

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
             PN  TY ++L   G+    E+ + +   MK  G   +   +NT+LAMC   G      
Sbjct: 429 CVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVN 488

Query: 396 EIFEDMKSSENC--QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           ++F +MK   NC  +PD  TF+++I+     G  ++A  M  EM++AGF P +    +L+
Sbjct: 489 QVFREMK---NCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALL 545

Query: 454 QCYGKAQRTD 463
                A+R D
Sbjct: 546 NAL--ARRGD 553



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 151/346 (43%), Gaps = 37/346 (10%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
           A +LFD +       D   ++T++         ++A+E FERM   G  P  +TY+ M+D
Sbjct: 206 ASKLFDVIPLDDYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLD 265

Query: 244 AYGRAGNV---------EMAF--------------------GLYDRAR-------NEKWR 267
            YG+ G           EM                      GL D AR       +E ++
Sbjct: 266 VYGKMGRSWDKILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYK 325

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                ++ L+ ++G AG F   L+V  EM+     P+ +TYN ++    RA    +   +
Sbjct: 326 PGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVV 385

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
              M   G+ PN  TY +++ AYGR    +  L ++ +M E G   +V  YN +L M   
Sbjct: 386 IDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGK 445

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
              ++E  +I   MK +  C P+  T+++M+ +C  +G       +F EM   GFEP+  
Sbjct: 446 KSLSEEMMKILGHMKLN-GCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRD 504

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
              +LI  YG+    +D  +    + + G +P       LLN + +
Sbjct: 505 TFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALAR 550



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 167/395 (42%), Gaps = 38/395 (9%)

Query: 123 LRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTN-KLKASKE-VILYNVTMKVFRKCRD 180
           +R  G DF E  C  +L+          A  +F+  K +  K   + YN  + VF K   
Sbjct: 284 MRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGI 343

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
             +A  +  +M +    PD VT++ +++         +     + M S G  P+A+TY++
Sbjct: 344 FSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTT 403

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I+AYGR G+++ A  ++D+        +   ++ ++ + G     +  + +   MK  G
Sbjct: 404 IINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNG 463

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
             PN IT+N +L   G+      V  +++EM + G  P+ +T+ +L+ AYGR     D  
Sbjct: 464 CSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAA 523

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            ++ EM + G    +  YN LL   A  G    A  +  DM++ +  +P   ++S M+  
Sbjct: 524 KMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRN-KGFRPSETSYSLMVHS 582

Query: 421 CSCRGKVSEAEAM-----------------------------------FNEMLEAGFEPN 445
            +  G V   E +                                   F  + + G++P+
Sbjct: 583 YAKGGNVKGIEMIEKSIYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPD 642

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           L +  S++  + K    D     L  + + G+ PD
Sbjct: 643 LVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPD 677



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 127/265 (47%), Gaps = 3/265 (1%)

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           M+   GR     +A  L+D    + + +D  A++T++  Y   G +   + ++E M   G
Sbjct: 193 MVRILGRESQHTVASKLFDVIPLDDYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNESG 252

Query: 301 VKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           + P+++TYN +LD  G+  R W ++  +  EM   GL  +  T +++L A GR    ++ 
Sbjct: 253 LSPSLVTYNVMLDVYGKMGRSWDKILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEA 312

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
              +  +K +G +     YN LL +    G   EA  +  +M+ + NC PD+ T++ ++ 
Sbjct: 313 REFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEEN-NCPPDAVTYNEVVA 371

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                G   E   + + M   G  PN    T++I  YG+    D  +   +++ ELG  P
Sbjct: 372 AYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVP 431

Query: 480 DDRFCGCLLNVM-TQTPKEELGKLV 503
           +      +L ++  ++  EE+ K++
Sbjct: 432 NVATYNAVLGMLGKKSLSEEMMKIL 456



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 145/311 (46%), Gaps = 10/311 (3%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   +  + +  D+DKA  +FD M++ G  P+  T++ ++      +L  + ++    
Sbjct: 399 VTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGH 458

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   GC P+ +T+++M+   G+ G  +    ++   +N  +  D + F+TLI  YG  G+
Sbjct: 459 MKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGS 518

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    ++EEM   G  P + TYN LL+ + R       +++  +M + G  P+  +Y+ 
Sbjct: 519 NNDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSL 578

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM---CADVGYTDEAFEIFEDMK 402
           ++ +Y +    +    + + + +  +  S  L  TL+     C  +   + AF+  +   
Sbjct: 579 MVHSYAKGGNVKGIEMIEKSIYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQ--- 635

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKA 459
                +PD    +SM++I +       A  M   + +AG +P+L    SL+  Y   G  
Sbjct: 636 -KHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDC 694

Query: 460 QRTDDVVRALN 470
            + ++V+R L 
Sbjct: 695 WKAEEVLRMLQ 705



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 142/333 (42%), Gaps = 40/333 (12%)

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
           ++F +M + G +PD  TF+TLIS        N A +  E M   G  P   TY+++++A 
Sbjct: 489 QVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNAL 548

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN-----------FDGCL---- 290
            R G+ + A  +    RN+ +R    ++S ++  Y   GN           +DG +    
Sbjct: 549 ARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFPSW 608

Query: 291 --------------------NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
                                 ++ ++  G KP+++  N++L    +     +   + + 
Sbjct: 609 MLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRL 668

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           + D GL P+  T+ SL+  Y R         V R ++  G +  +  YNT++      G 
Sbjct: 669 IHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGL 728

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
             E   I  +M +S    P  +T+++ I+  + +G  +E   + + M+     PN     
Sbjct: 729 MQEGIRILSEM-TSIGVGPCIFTYNTFISGYAAQGMFTEINDVISYMIVHNCRPNELTYK 787

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
            +   Y KA+R D+ +  ++++ ++    DD F
Sbjct: 788 IVADGYCKARRYDEAIDFVSKIKDV----DDTF 816



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 90/192 (46%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           KCR L   ER F  +   G KPD V  ++++S    NN+ ++A E    +   G  PD +
Sbjct: 620 KCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLV 679

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           T++S++D Y R G+   A  +    +    + D  +++T+IK +   G     + +  EM
Sbjct: 680 THNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEM 739

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
            +IGV P + TYN  +          ++  +   M  +   PN  TY  +   Y +AR  
Sbjct: 740 TSIGVGPCIFTYNTFISGYAAQGMFTEINDVISYMIVHNCRPNELTYKIVADGYCKARRY 799

Query: 357 EDTLSVYREMKE 368
           ++ +    ++K+
Sbjct: 800 DEAIDFVSKIKD 811



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/249 (18%), Positives = 115/249 (46%), Gaps = 5/249 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERM 226
           YN  +    +  D   AE +  DM ++G +P   ++S ++ S A+  N+  K +E  E+ 
Sbjct: 541 YNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNV--KGIEMIEKS 598

Query: 227 PSFG-CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
              G   P  +   +++ A  +  ++      +   +   ++ D    ++++ ++     
Sbjct: 599 IYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNM 658

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           +D    +   +   G++P+++T+N+L+D   R    W+ + + + +  +G  P+  +Y +
Sbjct: 659 YDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNT 718

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +++ + R    ++ + +  EM   G+   +  YNT ++  A  G   E  ++   M    
Sbjct: 719 VIKGFCRKGLMQEGIRILSEMTSIGVGPCIFTYNTFISGYAAQGMFTEINDVISYM-IVH 777

Query: 406 NCQPDSWTF 414
           NC+P+  T+
Sbjct: 778 NCRPNELTY 786



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 106/229 (46%), Gaps = 9/229 (3%)

Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE-EMKAIGVKPNMITYNN---LL 312
            +D ++ E  ++D     +L+K    +GN++  L ++E  +  +G+    I  +    ++
Sbjct: 138 FFDSSKYELLQVD---LISLLKALDYSGNWEKALLLFEWSVLNLGIANEKIDRHAIELMV 194

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
             +GR  +      ++  +  +    +   Y ++L AY R       + ++  M E G+ 
Sbjct: 195 RILGRESQHTVASKLFDVIPLDDYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNESGLS 254

Query: 373 LSVTLYNTLLAMCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
            S+  YN +L +   +G + D+  E+ ++M+ S     D +T S++++ C   G + EA 
Sbjct: 255 PSLVTYNVMLDVYGKMGRSWDKILELLDEMR-SRGLDFDEFTCSTVLSACGREGLIDEAR 313

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             F+ +   G++P      +L+  +GKA    + +  L+ + E    PD
Sbjct: 314 EFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPD 362


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 179/374 (47%), Gaps = 2/374 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ +  F +C     A  +   ++  G +PD  TF+TLI+   +    +KAV   +RM  
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVE 186

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            GC PD +TY+S+++   R+G+  +AF +  +      + D   +ST+I      G  D 
Sbjct: 187 NGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDA 246

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            +++++EM+  G+K +++TYN+L+  + +A +      + K+M    + PN  T+  LL 
Sbjct: 247 AISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLD 306

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            + +    ++   +Y+EM  +G+  ++  YNTL+          EA  +  D+     C 
Sbjct: 307 VFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML-DLMVRNKCS 365

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD  TF+S+I       +V +   +F  + + G   N    + L+Q + ++ +       
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIE 527
              +   G+ PD    G LL+ +    K E+  ++ E ++KS   LG V+   + E   +
Sbjct: 426 FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCK 485

Query: 528 GDFKKEATELFNSI 541
           G   ++A  LF S+
Sbjct: 486 GGKVEDAWNLFCSL 499



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 153/334 (45%), Gaps = 16/334 (4%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  +    +  D   A  +   M +R VK D  T+ST+I     +   + A+  F
Sbjct: 192 DMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLF 251

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGN-VEMAFGLYDRARNEKWRIDPNA--FSTLIKLY 280
           + M + G     +TY+S++    +AG   + A  L D    E   I PN   F+ L+ ++
Sbjct: 252 KEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE---IVPNVITFNVLLDVF 308

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G       +Y+EM   G+ PN+ITYN L+D      R  +   +   M  N  SP+ 
Sbjct: 309 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 368

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            T+ SL++ Y   +  +D + V+R + ++G+  +   Y+ L+      G    A E+F++
Sbjct: 369 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 428

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M  S    PD  T+  ++      GK+ +A  +F ++ ++  +  + + T++I+   K  
Sbjct: 429 M-VSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG 487

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           + +D       LP  G+ P         NVMT T
Sbjct: 488 KVEDAWNLFCSLPCKGVKP---------NVMTYT 512



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 150/325 (46%), Gaps = 3/325 (0%)

Query: 156 TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
           T  +K+S  V+ YN  ++   K    +    L  DM+ R + P+ +TF+ L+        
Sbjct: 256 TKGIKSS--VVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGK 313

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
             +A E ++ M + G  P+ +TY++++D Y     +  A  + D     K   D   F++
Sbjct: 314 LQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTS 373

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LIK Y      D  + V+  +   G+  N +TY+ L+    ++ +    + +++EM  +G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           + P+  TY  LL         E  L ++ ++++  M L + +Y T++      G  ++A+
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            +F  +   +  +P+  T++ MI+    +G +SEA  +  +M E G  PN     +LI+ 
Sbjct: 494 NLFCSL-PCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552

Query: 456 YGKAQRTDDVVRALNRLPELGITPD 480
           + +        + +  +   G + D
Sbjct: 553 HLRDGDLTASAKLIEEMKSCGFSAD 577



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 138/299 (46%), Gaps = 1/299 (0%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D A  LF +M+     P  V FS   S        N  +++ +++   G   +  T + M
Sbjct: 70  DDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I+ + R      A+ +  +     +  D   F+TLI      G     + + + M   G 
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGC 189

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           +P+M+TYN++++ + R+        + ++M +  +  +  TY++++ +  R    +  +S
Sbjct: 190 QPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           +++EM+ KG++ SV  YN+L+      G  ++   + +DM S E   P+  TF+ ++ + 
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE-IVPNVITFNVLLDVF 308

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              GK+ EA  ++ EM+  G  PN+    +L+  Y    R  +    L+ +     +PD
Sbjct: 309 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367



 Score = 39.7 bits (91), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 70/145 (48%), Gaps = 2/145 (1%)

Query: 137 IILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+L+ + +      AL  F +  K K    +++Y   ++   K   ++ A  LF  +  +
Sbjct: 443 ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK 502

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           GVKP+ +T++ +IS        ++A     +M   G  P+  TY+++I A+ R G++  +
Sbjct: 503 GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTAS 562

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKL 279
             L +  ++  +  D ++   +I +
Sbjct: 563 AKLIEEMKSCGFSADASSIKMVIDM 587


>gi|410110145|gb|AFV61152.1| pentatricopeptide repeat-containing protein 123, partial [Nashia
           inaguensis]
          Length = 433

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 164/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 81  DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVF 140

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+P+  +++TL+++YG
Sbjct: 141 SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPSVVSYNTLLRVYG 198

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 199 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 258

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 259 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 318

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 319 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGXVKDITVFERMIHLLSKYKK 373

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   ++   LG  PD      +LN
Sbjct: 374 YSNVVEVFDKXRGLGYFPDSDVIAIVLN 401



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 138/292 (47%), Gaps = 1/292 (0%)

Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
           D+M  R + PD  T+STLI+      L + A  W ++M       D + YS++I+   + 
Sbjct: 1   DEMRQRALSPDRYTYSTLITHFGKEGLFDAAXSWLQKMEQDQVPGDLILYSNLIELSXKL 60

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
            +   A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y
Sbjct: 61  CDYSKAISIFSRLKRSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSY 120

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           + LL      K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M++
Sbjct: 121 STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G++ SV  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  
Sbjct: 181 MGIEPSVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHE 239

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +A  +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 240 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 291



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 148/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D + +S LI  +      +KA+  F R+ 
Sbjct: 15  YSTLITHFGKEGLFDAAXSWLQKMEQDQVPGDLILYSNLIELSXKLCDYSKAISIFSRLK 74

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    +      +  ++STL+ +Y     F 
Sbjct: 75  RSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFL 134

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ P+  +Y +LL
Sbjct: 135 EALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPSVVSYNTLL 194

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ S   
Sbjct: 195 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-SRGI 253

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R
Sbjct: 254 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKR 313

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 314 LLHELKRPDNIPRD 327



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 206 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 265

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 266 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 321

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 322 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGXVKDITVFERMIHLLSKYKKYSNVVEVF 381

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +    G  P+ +  A +L AYG+ +  +    VY EM+E G
Sbjct: 382 DKXRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 423



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 127/278 (45%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P  V+++TL+       L  +A+  F  M  
Sbjct: 156 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPSVVSYNTLLRVYGDAELFGEAIHLFRLMQR 215

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 216 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 273

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 274 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 332

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F D      
Sbjct: 333 LAGAGRI---EEATYVFRQAIDAGXVKDITVFERMIHLLSKYKKYSNVVEVF-DKXRGLG 388

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   +    + +  GK+ E   A  ++ EM E G
Sbjct: 389 YFPDSDVIA---IVLNAYGKLQEFDKANDVYMEMQEVG 423


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 165/353 (46%), Gaps = 6/353 (1%)

Query: 132 EQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDM 191
           E D + +L N+ +P  A+    +   +      V  YN  +    K     KA ++FDDM
Sbjct: 4   EDDVIHVLENIKSPKLASRVFKWAARQEDFQHTVFTYNAYLNALVKGGHGSKARKIFDDM 63

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
           L +   P+  T+  ++     +   + A+E  + M S    P     + ++    + G V
Sbjct: 64  LYKECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKV 123

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           + A+ LY R  +E   +D  +++ L      A   D  L V+ EM+   V P+++TYN L
Sbjct: 124 DAAYELYKRLSDE-CSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGL 182

Query: 312 LDTMGRAKRPWQVKTIYKEMTD----NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           L    RA R  Q  T+ +EM +    + + P+  +Y +++  + +AR       V R M 
Sbjct: 183 LYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMI 242

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
           + G   +V  +NTLL      G  DEA  +FE M    NC+P + T++ +IT  +   ++
Sbjct: 243 KSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYM-VERNCEPTAVTYTVLITGHARALRI 301

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +A   F +ML  G EPN++  T+LI     A + +D +  L R+   G  P+
Sbjct: 302 DKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPN 354



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 128/311 (41%), Gaps = 10/311 (3%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI----SCARMNNLPNKAVE 221
           I YN+      K   +D+A  +F +M +  V P  +T++ L+       RM        E
Sbjct: 142 ISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEE 201

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKL 279
             E        PD  +Y+++I  + +A  +  A   Y   R  K    PN   F+TL+  
Sbjct: 202 MIEGKKGSDVVPDMYSYNTVISGFCKARQLPTA--RYVLRRMIKSGCSPNVVTFNTLLDG 259

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
               G  D    ++E M     +P  +TY  L+    RA R  +    + +M   G+ PN
Sbjct: 260 LCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPN 319

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY +L+     A   ED L + + M   G + +V  Y  ++      G  + A ++F 
Sbjct: 320 VYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFN 379

Query: 400 DMKSSEN--CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           D   S    C+PDS+ +S+++     + K  EA   F  M+E+       +  ++     
Sbjct: 380 DAMGSRTAKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGLE 439

Query: 458 KAQRTDDVVRA 468
             Q T+ V R 
Sbjct: 440 LVQETEKVERV 450



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 15/180 (8%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y V +    +   +DKA   F DML RGV+P+  T++ LI      N    A+E  +R
Sbjct: 286 VTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKR 345

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA---RNEKWRIDPNAFSTLIKLYGT 282
           M S G +P+ +TY+ +I A  + G +E A  L++ A   R  K + D  A+ST++     
Sbjct: 346 MSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIVYWLCR 405

Query: 283 AGNFDGCLNVYE------EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
              F   L  YE      E K +  KP++  Y  + D +   +   +V+ +  E + +G+
Sbjct: 406 QSKF---LEAYEYFLRMVESKLVA-KPHI--YKAMADGLELVQETEKVERVCLEASAHGI 459


>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 819

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 180/386 (46%), Gaps = 15/386 (3%)

Query: 122 VLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDL 181
           V+ CL       D V +LN+M               +++ S +V+ Y   +  +  C  +
Sbjct: 299 VIHCLVKVGQHGDAVDLLNSMRE------------KRVQCSPDVVTYTSIIHSYYVCGQV 346

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           +  + +FD M+  GVKP+ V+++ L+     + +  +A   F+ +   G  PD ++Y+++
Sbjct: 347 ENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVVSYTTL 406

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           ++AYGR+   E A  +++  R    + +  +++ LI  YG+AG F   +++  EM+  G+
Sbjct: 407 LNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKDGI 466

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            P++++ + LL   GR ++  ++ T+ +     G+  N   Y S + +Y      E  L 
Sbjct: 467 PPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEKALK 526

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           +Y  M    +      YN L++    +G   E+ + FEDM            +SS+I   
Sbjct: 527 LYATMMASNVNPDAVTYNILISGLCKLGKYAESLKFFEDMVDLR-IPLTKEVYSSLICSY 585

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
             + K++EAE+ F  M  +G  P++   T++IQ Y        V      +    I PD 
Sbjct: 586 VKQDKLAEAESTFINMKASGCFPDVLTYTAMIQAYTDHGSWTSVWDLFKEMEGNAILPDA 645

Query: 482 RFCGCLLNVMTQTPKEELGKLVECVE 507
             C  L+  + +    + G++++ ++
Sbjct: 646 IICSSLMEALNKG--NQYGRVLQLMK 669



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 104/481 (21%), Positives = 204/481 (42%), Gaps = 20/481 (4%)

Query: 119 VFSVLRCLGDDFLEQDCVIILNNMT---NPDTAALALTYFTNKLKASKEVILYNVTMKVF 175
           V +VL C    F  ++  +++  M    + + A     +  N+        +Y + +++ 
Sbjct: 104 VDAVLNCWAGRFARRNFPLLIREMAFSGSLEHAVYVFCWMKNQENYCARNDIYGMMIQLH 163

Query: 176 RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
            +   +D+A  LF +M +   KPD   +++LI+      L   A+   + M      P  
Sbjct: 164 ARHNQVDQARGLFFEMQEWRCKPDADIYNSLINAHARAGLWRWAINIMDDMLRAAIPPSR 223

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
            TY+++++A G AGN + A  L  +        D    + ++  +     +      +E 
Sbjct: 224 ATYNNVVNACGAAGNWKKALELCKKMIRNGVGPDLVTHNIVLSAFKNGFQYTKATGYFEM 283

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL--SPNWNTYASLLRAYGRA 353
           MK   + P+  T N ++  + +  +      +   M +  +  SP+  TY S++ +Y   
Sbjct: 284 MKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSYYVC 343

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
              E+  +V+  M  +G++ ++  YN LL   A  G   EAF IF+ +K +   +PD  +
Sbjct: 344 GQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQN-GLRPDVVS 402

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           +++++       +  +A  +FNEM +   +PN     +LI  YG A    + +  L+ + 
Sbjct: 403 YTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEME 462

Query: 474 ELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV-----VKLLLEEQDIE 527
           + GI PD      LL    +  +  ++  ++E  +    +L  V     +   L   D E
Sbjct: 463 KDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYE 522

Query: 528 GDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE------LGLTLEVYTD 581
              K  AT + ++++ D      N LI     L     + K  E      + LT EVY+ 
Sbjct: 523 KALKLYATMMASNVNPDA--VTYNILISGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSS 580

Query: 582 I 582
           +
Sbjct: 581 L 581



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/290 (19%), Positives = 115/290 (39%), Gaps = 36/290 (12%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + YN+ +    K     ++ + F+DM+D  +      +S+LI      +   +A   F
Sbjct: 539 DAVTYNILISGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQDKLAEAESTF 598

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M + GC PD LTY++MI A                                   Y   
Sbjct: 599 INMKASGCFPDVLTYTAMIQA-----------------------------------YTDH 623

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G++    ++++EM+   + P+ I  ++L++ + +  +  +V  + K M D  +  N   Y
Sbjct: 624 GSWTSVWDLFKEMEGNAILPDAIICSSLMEALNKGNQYGRVLQLMKFMHDQCIQLNQKAY 683

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++ +    R  +    +   +      +SV   N LL      G T+   ++F  M S
Sbjct: 684 FEIIASCSMLRDWKTASEIIEHLDSSLPSISVGKLNYLLNFLGKCGKTESMMKLFYKMVS 743

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           S +    S T+  ++      GK  +   +   M +AG  P L++  +++
Sbjct: 744 SCSTVGLS-TYKVLLRNLLAVGKWRKYVEVLQWMEDAGVRPTLYMYQNVL 792


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 166/345 (48%), Gaps = 39/345 (11%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  +    + + + +A +LF  +L +G +P+  T++ LI      +  N+A E F
Sbjct: 257 DIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELF 316

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF-----------------------GLYDR 260
             +   G +PDA+TY+  ID   +AG VE A                        GL   
Sbjct: 317 SGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKE 376

Query: 261 ARNEKWRI----------DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
            R ++  +           PNA  F+TLI     AG +   +  ++EM   GVKP ++TY
Sbjct: 377 KRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTY 436

Query: 309 NNLLDTMGRAKRPWQVK---TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           N L+D + +A++  ++K   T++  M + G  P+  TY++L+   G+A   +D   +   
Sbjct: 437 NILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGA 496

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M+ KG   +V  YN+L++    +   DEA E+F  M   + C PD+ T+ ++I+    + 
Sbjct: 497 MEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAM-VEKGCVPDTITYGTIISALCKQE 555

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
            V +A A+F+  LEAG  P   +  SLI       R D+ ++ L 
Sbjct: 556 MVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLLQ 600



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 149/314 (47%), Gaps = 5/314 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N+ +    +   +  A+ +FD M   G  P+ +T++ L+S        + A   +ERM 
Sbjct: 53  FNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMI 112

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD +TY++++  + + G ++ A  ++D A    +  D   ++ LI  +  A   D
Sbjct: 113 KAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLD 172

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + + M +  + P+++TYN+L++ + +  R  + + +   + D G SPN  TY++L+
Sbjct: 173 EAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARML---IVDKGFSPNVITYSTLI 229

Query: 348 RAYGRA-RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
               R  R  E    +  +M   G +  +  YN L+   A      EA ++F  +   + 
Sbjct: 230 SGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSV-LRQG 288

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            +P+  T++ +I       +V+EA  +F+ +++ G EP+    T  I    KA R +D +
Sbjct: 289 YEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDAL 348

Query: 467 RALNRLPELGITPD 480
             L  + E G  PD
Sbjct: 349 LMLKDMDEKGCVPD 362


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 165/353 (46%), Gaps = 6/353 (1%)

Query: 132 EQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDM 191
           E D + +L N+ +P  A+    +   +      V  YN  +    K     KA ++FDDM
Sbjct: 4   EDDVIHVLENIKSPKLASRVFKWAARQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDM 63

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
           L +   P+  T+  ++     +   + A+E  + M S    P     + ++    + G V
Sbjct: 64  LYKECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKV 123

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           + A+ LY R  +E   +D  +++ L      A   D  L V+ EM+   V P+++TYN L
Sbjct: 124 DAAYELYKRLSDE-CSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGL 182

Query: 312 LDTMGRAKRPWQVKTIYKEMTD----NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           L    RA R  Q  T+ +EM +    + + P+  +Y +++  + +AR       V R M 
Sbjct: 183 LYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMI 242

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
           + G   +V  +NTLL      G  DEA  +FE M    NC+P + T++ +IT  +   ++
Sbjct: 243 KSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYM-VERNCEPTAVTYTVLITGHARALRI 301

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +A   F +ML  G EPN++  T+LI     A + +D +  L R+   G  P+
Sbjct: 302 DKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPN 354



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 128/311 (41%), Gaps = 10/311 (3%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI----SCARMNNLPNKAVE 221
           I YN+      K   +D+A  +F +M +  V P  +T++ L+       RM        E
Sbjct: 142 ISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEE 201

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKL 279
             E        PD  +Y+++I  + +A  +  A   Y   R  K    PN   F+TL+  
Sbjct: 202 MIEGKKGSDVVPDMYSYNTVISGFCKARQLPTA--RYVLRRMIKSGCSPNVVTFNTLLDG 259

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
               G  D    ++E M     +P  +TY  L+    RA R  +    + +M   G+ PN
Sbjct: 260 LCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPN 319

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY +L+     A   ED L + + M   G + +V  Y  ++      G  + A ++F 
Sbjct: 320 VYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFN 379

Query: 400 DMKSSEN--CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           D   S    C+PDS+ +S++I     + K  EA   F  M+E+       +  ++     
Sbjct: 380 DAMGSRTAKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGLE 439

Query: 458 KAQRTDDVVRA 468
             Q T+ V R 
Sbjct: 440 LVQETEKVERV 450



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 15/180 (8%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y V +    +   +DKA   F DML RGV+P+  T++ LI      N    A+E  +R
Sbjct: 286 VTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKR 345

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA---RNEKWRIDPNAFSTLIKLYGT 282
           M S G +P+ +TY+ +I A  + G +E A  L++ A   R  K + D  A+ST+I     
Sbjct: 346 MSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIIYWLCR 405

Query: 283 AGNFDGCLNVYE------EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
              F   L  YE      E K +  KP++  Y  + D +   +   +V+ +  E + +G+
Sbjct: 406 QSKF---LEAYEYFLRMVESKLVA-KPHI--YKAMADGLELVQETEKVERVCLEASAHGI 459


>gi|255582603|ref|XP_002532083.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528243|gb|EEF30297.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 841

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 126/533 (23%), Positives = 236/533 (44%), Gaps = 53/533 (9%)

Query: 176 RKCRDLDKAERL------FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
           R  + L KAE+L      F  + D G K D  T++ LI+      LP KA E +E M + 
Sbjct: 258 RVIQHLAKAEKLELSFCCFKKVQDSGCKIDTQTYNALITSFLNKGLPYKAFEIYESMQAA 317

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
            C  DA TY  MI +  ++G +++AF L+   +  K R     FS+L+   G +G  D  
Sbjct: 318 QCSLDASTYELMIPSLAKSGRLDVAFKLFQEMKERKIRPSFGIFSSLVDSMGKSGRLDTS 377

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           + +Y EM+  G++ +   Y +L+++  +A +      ++ EM   G  PN+  Y  ++ +
Sbjct: 378 MKIYMEMQGFGLRSSASMYVSLIESYTKAGKLDTALRLWDEMKKAGFRPNYGLYTLIIES 437

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
           + ++   +   S++++M + G   + + Y+ LL M A  G  D A +++  M ++   +P
Sbjct: 438 HAKSGKLDIATSIFKDMDKAGFLPTPSTYSCLLEMHAASGQVDSAMKLYNSM-TNAGLKP 496

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
              T+++++T+ + +  V  A  +  EM   GF  ++   + ++  Y K    D  +R L
Sbjct: 497 GLSTYTALLTLLASKKLVDVAAKILLEMKAMGFSVDVSA-SDVLMVYIKDGSVDLALRWL 555

Query: 470 NRLPELGITPDD-----RFCGCLLNVMTQTPKEELGKLVECVEKSN-----SKLGYVVKL 519
           + +   GI  ++      F  C+   + ++ K  L   V    K +     S L  +V+ 
Sbjct: 556 SFMGSSGIRTNNFIIRQLFESCMKKGLYESAKPLLETYVNSAAKVDLILYTSILANLVRC 615

Query: 520 LLEEQD-----IEGDFKKEA----------------------TELFNSISKDVK----KA 548
             E+ +     I G  + +A                       E F  I  D++    K 
Sbjct: 616 QEEQHERHLMSILGATRHKAHAFMCGLFTGPEQRQQPVLFFVREFFQGIDYDLEEGAAKY 675

Query: 549 YCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALH 607
           + N L++  V +  +  A  + ++    +++   I       WSL +++LS+GAAL A+ 
Sbjct: 676 FVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVV 735

Query: 608 IWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASV---FESHLKELNAP 657
             ++   K +      P  + + TG        + L+SV   FE     L AP
Sbjct: 736 HTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVVAQMLSSVESPFEVSKVVLRAP 788



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 152/319 (47%), Gaps = 10/319 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW----- 222
           Y +      K RD D  + LFD+M+    K      S++ +  R+     KA +      
Sbjct: 218 YALLFDGLNKIRDFDGIQSLFDEMVQDSSKGG---ISSVYAYNRVIQHLAKAEKLELSFC 274

Query: 223 -FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F+++   GC  D  TY+++I ++   G    AF +Y+  +  +  +D + +  +I    
Sbjct: 275 CFKKVQDSGCKIDTQTYNALITSFLNKGLPYKAFEIYESMQAAQCSLDASTYELMIPSLA 334

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            +G  D    +++EMK   ++P+   +++L+D+MG++ R      IY EM   GL  + +
Sbjct: 335 KSGRLDVAFKLFQEMKERKIRPSFGIFSSLVDSMGKSGRLDTSMKIYMEMQGFGLRSSAS 394

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            Y SL+ +Y +A   +  L ++ EMK+ G + +  LY  ++   A  G  D A  IF+DM
Sbjct: 395 MYVSLIESYTKAGKLDTALRLWDEMKKAGFRPNYGLYTLIIESHAKSGKLDIATSIFKDM 454

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             +    P   T+S ++ + +  G+V  A  ++N M  AG +P L   T+L+      + 
Sbjct: 455 DKA-GFLPTPSTYSCLLEMHAASGQVDSAMKLYNSMTNAGLKPGLSTYTALLTLLASKKL 513

Query: 462 TDDVVRALNRLPELGITPD 480
            D   + L  +  +G + D
Sbjct: 514 VDVAAKILLEMKAMGFSVD 532



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 149/338 (44%), Gaps = 21/338 (6%)

Query: 257 LYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEM---KAIGVKPNMITYNNLL 312
           L+  A+ + W + D   ++ L        +FDG  ++++EM    + G   ++  YN ++
Sbjct: 201 LFKWAKRQTWYVVDDECYALLFDGLNKIRDFDGIQSLFDEMVQDSSKGGISSVYAYNRVI 260

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
             + +A++       +K++ D+G   +  TY +L+ ++           +Y  M+     
Sbjct: 261 QHLAKAEKLELSFCCFKKVQDSGCKIDTQTYNALITSFLNKGLPYKAFEIYESMQAAQCS 320

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
           L  + Y  ++   A  G  D AF++F++MK     +P    FSS++      G++  +  
Sbjct: 321 LDASTYELMIPSLAKSGRLDVAFKLFQEMK-ERKIRPSFGIFSSLVDSMGKSGRLDTSMK 379

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           ++ EM   G   +  +  SLI+ Y KA + D  +R  + + + G  P+      ++    
Sbjct: 380 IYMEMQGFGLRSSASMYVSLIESYTKAGKLDTALRLWDEMKKAGFRPNYGLYTLIIESHA 439

Query: 493 QTPKEELGKLVECVEKSNSKLGYV-----VKLLLEEQDIEGDFKKEATELFNSISKDVKK 547
           ++ K ++      + K   K G++        LLE     G     A +L+NS++    K
Sbjct: 440 KSGKLDIA---TSIFKDMDKAGFLPTPSTYSCLLEMHAASGQV-DSAMKLYNSMTNAGLK 495

Query: 548 ---AYCNCLIDLCVNLNLLENACKLL----ELGLTLEV 578
              +    L+ L  +  L++ A K+L     +G +++V
Sbjct: 496 PGLSTYTALLTLLASKKLVDVAAKILLEMKAMGFSVDV 533


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 160/330 (48%), Gaps = 1/330 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           + S  V  YN+ ++ F    +L K    F +M   G  P+ VT++TLI         ++A
Sbjct: 5   RVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEA 64

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
               + M S G  P+ ++Y+ +I+   R G+++ A+ + +    + +  D   ++TL+  
Sbjct: 65  FGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNG 124

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           Y   GNF   L ++ EM   GV P+++TY  L+++M +A+   +    + +M   GL PN
Sbjct: 125 YCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPN 184

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY +L+  + R     +   +  EM E G   SV  YN  +     +   +EA  + +
Sbjct: 185 ERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQ 244

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +M   +   PD  ++S++I+    +G++  A  M  EM+E G  P+    +SLIQ   + 
Sbjct: 245 EM-VEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEM 303

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           +R  +       + ++G+ PD+     L+N
Sbjct: 304 RRLTEACDLSQEMLDMGLPPDEFTYTTLIN 333



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 172/407 (42%), Gaps = 32/407 (7%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
            S  V+ Y   +    K R+L++A   FD M  RG++P+  T++TLI       L N+A 
Sbjct: 146 VSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAY 205

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
                M   G  P  +TY++ I  +     +E A G+      +    D  ++ST+I  +
Sbjct: 206 RILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGF 265

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G  D    + +EM   GV P+ +TY++L+  +   +R  +   + +EM D GL P+ 
Sbjct: 266 CRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDE 325

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY +L+ AY         L ++ EM  KG       Y+ L+        T EA  +   
Sbjct: 326 FTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFK 385

Query: 401 MKSSENCQPDSWTFSSMITICS---------------CRGKVSEAEAMFNEMLEAGFEPN 445
           +   E+  P   T+ ++I  CS                +G + EA+ +F  M+E   +P 
Sbjct: 386 LIYEESV-PSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPG 444

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCLLNV-----MTQTPKE 497
             V   +I  +    R  ++ +A N   E+   G  P       L+       M +   E
Sbjct: 445 EAVYNVIIHGH---CRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSE 501

Query: 498 ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKK--EATELFNSIS 542
            +G  +     + ++L    K+L+E    EG+ +     + L+N +S
Sbjct: 502 VIGDTLRSCRLNEAEL---AKVLVEINHKEGNMEAVLNVSRLYNKLS 545



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 146/308 (47%), Gaps = 38/308 (12%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFE 224
           + YN  +  + K  +  +A  +  +M+  GV P  VT++ LI S  +  NL N+A+E+F+
Sbjct: 116 VTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNL-NRAMEFFD 174

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M   G  P+  TY+++ID + R G +           NE +RI                
Sbjct: 175 QMRIRGLRPNERTYTTLIDGFSRQGLL-----------NEAYRI---------------- 207

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                LN   EM   G  P+++TYN  +      +R  +   + +EM + GL+P+  +Y+
Sbjct: 208 -----LN---EMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYS 259

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +++  + R    +    + +EM EKG+      Y++L+    ++    EA ++ ++M   
Sbjct: 260 TIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDM 319

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               PD +T++++I      G +++A  + +EM+  GF P+    + LI    K  RT +
Sbjct: 320 -GLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTRE 378

Query: 465 VVRALNRL 472
             R L +L
Sbjct: 379 AKRLLFKL 386



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 1/161 (0%)

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           M  + +SPN  TY  L+R +      +  L  + EM+  G   +V  YNTL+     +G 
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
            DEAF + + M SS+  QP+  +++ +I      G + EA  +  EM   GF P+     
Sbjct: 61  IDEAFGLLKSM-SSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYN 119

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
           +L+  Y K       +     +   G++P       L+N M
Sbjct: 120 TLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSM 160


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 166/344 (48%), Gaps = 3/344 (0%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
           ++  M  PD   ++L     + +   ++  + + +K F  C  L  A   F  +   G+ 
Sbjct: 88  VVVRMERPDLV-ISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLH 146

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           PD VTF+TL+    + +  ++A+  F +M    C P+ +T++++++   R G +  A  L
Sbjct: 147 PDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMG 316
            DR   +  +     + T++      G+    LN+  +M+ +  + PN++ Y+ ++D++ 
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLC 266

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +  R    + ++ EM + G+ P+  TY S++  +  +    D   + +EM E+ +   V 
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            YN L+      G   EA E++++M       P++ T+SSMI     + ++  AE MF  
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEML-PRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           M   G  PNL    +LI  Y  A+R DD +  L+ + E G+  D
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 151/325 (46%), Gaps = 33/325 (10%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S +V+ YN  +  F K     +AE L+D+ML RG+ P+ +T+S++I      N  + A
Sbjct: 320 KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAA 379

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              F  M + GC P+ +T++++ID Y  A  ++    L           D   ++TLI  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQV-KTIYKEMTDNG 335
           +   G+ +  L++ +EM + G+ P+++T + LLD +   G+ K   ++ K + K   D  
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
            S  +N                            G++  V  YN L++   + G   EA 
Sbjct: 500 ASHPFN----------------------------GVEPDVQTYNILISGLINEGKFLEAE 531

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           E++E+M       PD+ T+SSMI     + ++ EA  MF+ M    F PN+   T+LI  
Sbjct: 532 ELYEEM-PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 456 YGKAQRTDDVVRALNRLPELGITPD 480
           Y KA R DD +     +   GI  +
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVAN 615



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 167/426 (39%), Gaps = 83/426 (19%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD--LDKAERLFDDMLDRG 195
           +L+ +   D  + AL  F    + +    +   T  +   CR+  + +A  L D M++ G
Sbjct: 155 LLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214

Query: 196 VKPDNVTFSTLIS--CARMNN----------------LPNKAV----------------- 220
           ++P  +T+ T++   C + +                 +PN  +                 
Sbjct: 215 LQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 221 -EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              F  M   G  PD  TY+SMI  +  +G    A  L       K   D   ++ LI  
Sbjct: 275 QNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +   G F     +Y+EM   G+ PN ITY++++D   +  R    + ++  M   G SPN
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL----------------- 382
             T+ +L+  Y  A+  +D + +  EM E G+    T YNTL+                 
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQ 454

Query: 383 -----AMCADV-------------GYTDEAFEIFEDMKSSE----------NCQPDSWTF 414
                 +C D+             G   +A E+F+ M+ S+            +PD  T+
Sbjct: 455 EMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTY 514

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + +I+     GK  EAE ++ EM   G  P+    +S+I    K  R D+  +  + +  
Sbjct: 515 NILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGS 574

Query: 475 LGITPD 480
              +P+
Sbjct: 575 KSFSPN 580



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 127/279 (45%), Gaps = 2/279 (0%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A++ F  M      P  + +  ++    R    ++   LY +   ++ R D  +F+ LIK
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIK 122

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            + +       L+ + ++  +G+ P+++T+N LL  +    R  +   ++ +M +    P
Sbjct: 123 CFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRP 182

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEI 397
           N  T+ +L+    R     + +++   M E G+Q +   Y T++  MC   G T  A  +
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKK-GDTVSALNL 241

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
              M+   +  P+   +S++I      G+ S+A+ +F EM E G  P+LF   S+I  + 
Sbjct: 242 LRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
            + R  D  + L  + E  I+PD      L+N   +  K
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 141/320 (44%), Gaps = 12/320 (3%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F + + L+ A  LF DML     P  V F  L+        P+  +  +++M       D
Sbjct: 54  FHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCD 113

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
             +++ +I  +     +  A   + +        D   F+TL+            LN++ 
Sbjct: 114 IYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFH 173

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           +M     +PN++T+  L++ + R  R  +   +   M ++GL P   TY +++    +  
Sbjct: 174 QMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG 233

Query: 355 YGEDTLSVYREMKEKGMQL-SVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
                L++ R+M+E    + +V +Y+ ++ ++C D G   +A  +F +M+  +   PD +
Sbjct: 234 DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD-GRHSDAQNLFTEMQ-EKGIFPDLF 291

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T++SMI      G+ S+AE +  EMLE    P++    +LI  + K  +  +     + +
Sbjct: 292 TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351

Query: 473 PELGITPD--------DRFC 484
              GI P+        D FC
Sbjct: 352 LPRGIIPNTITYSSMIDGFC 371


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 149/305 (48%), Gaps = 4/305 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAV 220
           S +VI      + F K + +D+A +L  DM+++   KPD V ++ +I          +A 
Sbjct: 136 SSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAY 195

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIK 278
           E  E + S GC P+A+TY+++ID + ++GN+  A  L+    +     +PN   F+ LI 
Sbjct: 196 EMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALIS 255

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
               A   +    + ++MKA  ++ +  TY  L+D + +  R  +V  +++EM   G +P
Sbjct: 256 GLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNP 315

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  TY +L+ A+ +A   +D   V R M  KG+   VT Y  LL    + G    A E F
Sbjct: 316 SVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFF 375

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           E +   E C P +  +S+++  C     V EA   + EML+    P+      L++   K
Sbjct: 376 EKI-LRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCK 434

Query: 459 AQRTD 463
             RTD
Sbjct: 435 RGRTD 439



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 118/270 (43%), Gaps = 10/270 (3%)

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           P+  TFS LI+         +AVE + +M    C P+    + ++ +  +AG ++ A  +
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMG 316
           +   R  +        + LI  +      D  L ++ EM K   + P   TY  ++    
Sbjct: 61  F---RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYC 117

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-KGMQLSV 375
           +  R  Q + + +E   +  S +     S+ R + +A+  ++   +  +M E K  +  +
Sbjct: 118 KMDRLDQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDI 175

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             +N ++      G   EA+E+ E +  S  C P++ T++++I      G +SEA  +F 
Sbjct: 176 VAWNVIIHGFCKAGRVREAYEMLETL-VSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFK 234

Query: 436 EM--LEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +   +   EPN+    +LI    KA R +
Sbjct: 235 VLSSRDHHAEPNVVTFNALISGLCKADRLE 264



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/232 (20%), Positives = 90/232 (38%), Gaps = 35/232 (15%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A   V+ +N  +    K   L+ A  L   M  R ++ D  T++TL+         ++  
Sbjct: 243 AEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVS 302

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
             FE M   GC+P  +TY++++ A+ +AG+++ A                          
Sbjct: 303 RVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDA-------------------------- 336

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
                      V   M A G+ P++ TY  LL+ +    +       ++++      P  
Sbjct: 337 ---------QQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCA 387

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             Y++L+R   +A   ++ +  Y EM ++ +         L+ M    G TD
Sbjct: 388 VVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 142/335 (42%), Gaps = 36/335 (10%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +  F +    D  +R F DM+  G KP   T++ +I C         A   FE M  
Sbjct: 102 NGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKF 161

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  PD +TY+SMID YG+ G ++     ++  ++     D   ++TLI  +   G    
Sbjct: 162 RGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPK 221

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L  + EMK  G+KPN+++Y+ L+D   +     Q    Y +M   GL PN +TY SL+ 
Sbjct: 222 GLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVD 281

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           AY +     D   +  EM + G++ +V  Y  L+    DV    EA              
Sbjct: 282 AYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEA-------------- 327

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
                                 E +F +M+ AG  PNL   T+LI  + KA+  D  +  
Sbjct: 328 ----------------------EELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALEL 365

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 503
           L+ +   GI PD    G  +  +    K E  K+V
Sbjct: 366 LDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVV 400



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 141/298 (47%), Gaps = 38/298 (12%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEW 222
           + + YN  +  + K   LD     F++M     +PD +T++TLI+C  +   LP K +E+
Sbjct: 167 DTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLP-KGLEF 225

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F  M   G  P+ ++YS+++DA+ +   ++ A   Y   R      + + +++L+  Y  
Sbjct: 226 FREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCK 285

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            GN      + +EM  +GV+ N++TY  L+D +   +R  + + ++ +M   G+ PN  +
Sbjct: 286 IGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLAS 345

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +L+  + +A+  +  L +  EMK +G++  + LY T +                    
Sbjct: 346 YTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFI-------------------- 385

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
                    W+   +        K+  A+ + NEM E G + N F+ T+L+  Y K++
Sbjct: 386 ---------WSLCGL-------EKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSE 427



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 172/372 (46%), Gaps = 44/372 (11%)

Query: 153 TYFTNKLKA---SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC 209
            YF  ++K+     +VI YN  +  F K   L K    F +M   G+KP+ V++STL+  
Sbjct: 188 VYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDA 247

Query: 210 ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF-------------- 255
               ++  +A++++  M   G  P+  TY+S++DAY + GN+  AF              
Sbjct: 248 FCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWN 307

Query: 256 ---------GLYDRARNEKWR----------IDPN--AFSTLIKLYGTAGNFDGCLNVYE 294
                    GL D  R ++            + PN  +++ LI  +  A N D  L + +
Sbjct: 308 VVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLD 367

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           EMK  G+KP+++ Y   + ++   ++    K +  EM + G+  N   Y +L+ AY ++ 
Sbjct: 368 EMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSE 427

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
              + L +  EM E  ++++   +  L+          +A + F  + +    Q ++  +
Sbjct: 428 NPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIY 487

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL---NR 471
           ++MI       +V  A  +F +M + G  P+    TSLI   GK ++  +VV+AL   ++
Sbjct: 488 TAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLID--GKLKQ-GNVVQALALRDK 544

Query: 472 LPELGITPDDRF 483
           + E+G+    RF
Sbjct: 545 MAEIGVESGARF 556



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 100/211 (47%), Gaps = 7/211 (3%)

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           FS LI+       F+  L  + +MK   V P   + N LL    R  +   +K  +K+M 
Sbjct: 70  FSVLIE----EDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMI 125

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             G  P   TY  ++    +    E    ++ EMK +G+      YN+++     VG  D
Sbjct: 126 GAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLD 185

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           +    FE+MKS  +C+PD  T++++I  C C+ GK+ +    F EM ++G +PN+   ++
Sbjct: 186 DTVYFFEEMKSM-SCEPDVITYNTLIN-CFCKFGKLPKGLEFFREMKQSGLKPNVVSYST 243

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           L+  + K       ++    +  LG+ P++ 
Sbjct: 244 LVDAFCKEDMMQQALKFYVDMRRLGLVPNEH 274



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 3/150 (2%)

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
           T N   P +  + +L          E+ L  + +MK   +       N LL   A +G T
Sbjct: 55  TRNVCVPGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKT 114

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLT 450
           D     F+DM  +   +P  +T++ MI  C C+ G +  A  +F EM   G  P+     
Sbjct: 115 DGMKRFFKDMIGA-GSKPTVFTYNIMID-CMCKEGDIEAASGLFEEMKFRGLIPDTVTYN 172

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           S+I  YGK  R DD V     +  +   PD
Sbjct: 173 SMIDGYGKVGRLDDTVYFFEEMKSMSCEPD 202


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 149/305 (48%), Gaps = 4/305 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAV 220
           S +VI      + F K + +D+A +L  DM+++   KPD V ++ +I          +A 
Sbjct: 136 SSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAY 195

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIK 278
           E  E + S GC P+A+TY+++ID + ++GN+  A  L+    +     +PN   F+ LI 
Sbjct: 196 EMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALIS 255

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
               A   +    + ++MKA  ++ +  TY  L+D + +  R  +V  +++EM   G +P
Sbjct: 256 GLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNP 315

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  TY +L+ A+ +A   +D   V R M  KG+   VT Y  LL    + G    A E F
Sbjct: 316 SVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFF 375

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           E +   E C P +  +S+++  C     V EA   + EML+    P+      L++   K
Sbjct: 376 EKI-LRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCK 434

Query: 459 AQRTD 463
             RTD
Sbjct: 435 RGRTD 439



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 118/270 (43%), Gaps = 10/270 (3%)

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           P+  TFS LI+         +AVE + +M    C P+    + ++ +  +AG ++ A  +
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAI 60

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMG 316
           +   R  +        + LI  +      D  L ++ EM K   + P   TY  ++    
Sbjct: 61  F---RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYC 117

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-KGMQLSV 375
           +  R  Q + + +E   +  S +     S+ R + +A+  ++   +  +M E K  +  +
Sbjct: 118 KMDRLDQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDI 175

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             +N ++      G   EA+E+ E + S   C P++ T++++I      G +SEA  +F 
Sbjct: 176 VAWNVIIHGFCKAGRVREAYEMLETLVSM-GCVPNAVTYTTLIDGFCKSGNLSEALQLFK 234

Query: 436 EM--LEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +   +   EPN+    +LI    KA R +
Sbjct: 235 VLSSRDHHAEPNVVTFNALISGLCKADRLE 264



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/232 (20%), Positives = 90/232 (38%), Gaps = 35/232 (15%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A   V+ +N  +    K   L+ A  L   M  R ++ D  T++TL+         ++  
Sbjct: 243 AEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVS 302

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
             FE M   GC+P  +TY++++ A+ +AG+++ A                          
Sbjct: 303 RVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDA-------------------------- 336

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
                      V   M A G+ P++ TY  LL+ +    +       ++++      P  
Sbjct: 337 ---------QQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCA 387

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             Y++L+R   +A   ++ +  Y EM ++ +         L+ M    G TD
Sbjct: 388 VVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/441 (23%), Positives = 195/441 (44%), Gaps = 51/441 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N  +K+      + +AE +   +   G  PD  T+++LI     N   + A E F+RM 
Sbjct: 205 FNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMV 264

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR--------------------------- 260
             GCDP+++TYS++I+     G +E A  + +                            
Sbjct: 265 KDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSC 324

Query: 261 ------ARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
                  + +K    PN   ++ LI      G F+  + VY +M A G+ P  +TY+ L+
Sbjct: 325 EAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALI 384

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           + +    R     TI++ M  +   PN  TY  +++ +    Y +   +++ +M + G  
Sbjct: 385 NQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPS 444

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YN ++ +    GY + A  + E MK +   + D+WT++++I+  S  GK+  A +
Sbjct: 445 PNVITYNIIIHIYFKQGYMNNAMRLLEMMKGN-GLKLDTWTYANLISGFSRGGKLEHAFS 503

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           +FNEM+E G  PN+    ++I  Y    + DD +    ++ E G  P       +++  +
Sbjct: 504 LFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFS 563

Query: 493 QTPKEE-----LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKK 547
           +T +        GK+V        K G +  ++     I+G  K   T L   I  ++KK
Sbjct: 564 KTNRISEAENFCGKMV--------KQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKK 615

Query: 548 AYCNCLIDLCVNLNLLENACK 568
              +   +LC   +L++  C+
Sbjct: 616 R--DYFPNLCTYSSLIDGLCQ 634



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 149/304 (49%), Gaps = 6/304 (1%)

Query: 180 DLDKAER-LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           D+D   R ++ +ML+ G++P+  TF+ +I          +A      +  +G  PD  TY
Sbjct: 181 DMDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTY 240

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEM 296
           +S+I  + + GN+++AF ++DR   +    DPN+  +S LI    + G  +  +++ EEM
Sbjct: 241 TSLIIGHCKNGNLDLAFEMFDRMVKDG--CDPNSVTYSALINGLCSEGRLEEAMDMLEEM 298

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
              G++P +  Y   + ++  A R  +   +  +M   G  PN  TY +L+    R    
Sbjct: 299 IDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKF 358

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           E  + VY +M   G+  +   Y+ L+      G  + A  IFE M S ++  P++ T++ 
Sbjct: 359 EVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSL-PNTETYNV 417

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I      G + +A A+F++ML+AG  PN+     +I  Y K    ++ +R L  +   G
Sbjct: 418 IIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNG 477

Query: 477 ITPD 480
           +  D
Sbjct: 478 LKLD 481



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 161/378 (42%), Gaps = 10/378 (2%)

Query: 151 ALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A   F   LKA  S  VI YN+ + ++ K   ++ A RL + M   G+K D  T++ LIS
Sbjct: 431 ATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLIS 490

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                     A   F  M   G  P+ +TY+++I+ Y     V+ A  L+ +        
Sbjct: 491 GFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVP 550

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
               ++ +I  +          N   +M   G+ PN+ITY + +D + +  R      I+
Sbjct: 551 SSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIF 610

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            EM      PN  TY+SL+    +    ED       + + G + +V  Y TL+      
Sbjct: 611 HEMKKRDYFPNLCTYSSLIDGLCQEGQAEDA----ERLLDDGCEPNVDTYTTLVRGLCGK 666

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLF 447
           G   EA ++ E MK  +  QP    + +++ +  C+  +V  A  +F+ M+  GF+P L 
Sbjct: 667 GRCYEADQLVESMK-KKGLQPSEEIYRALL-VGQCKNLEVESALKIFDSMVTTGFQPCLS 724

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECV 506
              +LI    KA            + +     D+     LL+ + +  + +L  +L+  +
Sbjct: 725 DYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVM 784

Query: 507 EKSNSKLGYVVKLLLEEQ 524
           E  N  L +  +++L  +
Sbjct: 785 ESRNCTLNFQTRVMLARE 802



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 3/134 (2%)

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           ++TLL             +++ +M +S   +P+ +TF++MI I   +GKV EAE +   +
Sbjct: 170 FSTLLIQLGKFDMDGLGRDVYIEMLNS-GIRPNLFTFNAMIKILCNKGKVQEAELIMGHI 228

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK- 496
              G  P+ F  TSLI  + K    D      +R+ + G  P+      L+N +    + 
Sbjct: 229 FHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRL 288

Query: 497 -EELGKLVECVEKS 509
            E +  L E ++K 
Sbjct: 289 EEAMDMLEEMIDKG 302


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 159/342 (46%), Gaps = 7/342 (2%)

Query: 168 YNVTMKVFRKCR--DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           +  T  +   CR  DLD A ++F+ M   G +P+ VT+STLI+    +   N+A +    
Sbjct: 251 FTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIRE 310

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P A T +  I A    G  E A+ L+   +N+    +   ++ LI     +G 
Sbjct: 311 MILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGL 370

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               + ++  M   GV PN +TYN L++ +   +R      +   M  NG SPN  TY  
Sbjct: 371 LKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNE 430

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +++ Y      +  + V   M ++G   ++  YNT++    D G T  A  I + M+   
Sbjct: 431 MIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDG- 489

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
            C+PD W+++ +I       K+  A  +FNEM++ G  PN    T+LI  Y K ++ D  
Sbjct: 490 GCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTA 549

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQ----TPKEELGKLV 503
              L  +   G  P+ +    L++ +T+    +  EEL K++
Sbjct: 550 TSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVM 591



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 137/293 (46%), Gaps = 1/293 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  ++ YN  +K +    D  KA  + ++ML RG   + VT++T+I     +     A+ 
Sbjct: 422 SPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALR 481

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + M   GC PD  +Y+ +I  + +   +E AFGL++   ++    +   ++ LI  Y 
Sbjct: 482 ILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYC 541

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                D   ++ E MK  G +PN+ TYN L+  + +       + + K M + G+ PN  
Sbjct: 542 KDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVV 601

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +++    +       L ++ +M E+G   ++  Y++L+      G  +EA  +F ++
Sbjct: 602 TYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAEL 661

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           +      PD  T+  MI      GKV  A      M++AG +P L+    LI+
Sbjct: 662 E-RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK 713



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 145/332 (43%), Gaps = 1/332 (0%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
            A+ L +  ++       + YN  + +  + R +  A  + + M   G  P+ VT++ +I
Sbjct: 373 VAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMI 432

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
               +   P KA+     M   G   + +TY+++I  Y  +GN   A  + D  R+   +
Sbjct: 433 KGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCK 492

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D  +++ LI  +      +    ++ EM   G+ PN +TY  L+D   + ++     ++
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSL 552

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            + M  +G  PN  TY  L+    +         + + M E+G+  +V  Y  ++     
Sbjct: 553 LEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCK 612

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G T  A E+F  M   + C P+  T+SS+I      GKV EAE +F E+   G  P+  
Sbjct: 613 NGSTSLALEMFNKM-IEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEI 671

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
               +I+ Y  + + +     L R+ + G  P
Sbjct: 672 TYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQP 703



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 132/288 (45%), Gaps = 4/288 (1%)

Query: 172 MKVFRKCRDLDKAERL--FDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           + + + C   +   R   F DML + G++     +S L+       +    ++ + RM S
Sbjct: 149 IHLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLS 208

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  P+ L Y+++I+A  + GNV  A  +  +    +   D   ++++I  +    + D 
Sbjct: 209 EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDS 268

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L V+ +M   G +PN +TY+ L++ +  + R  +   + +EM  +G+ P  +T    + 
Sbjct: 269 ALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPII 328

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A       ED   ++ +MK KG + +V  Y  L++     G    A  +F  M S +   
Sbjct: 329 ALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM-SRDGVF 387

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           P++ T++++I I     ++  A  + N M   G  PN+     +I+ Y
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGY 435



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 110/235 (46%), Gaps = 1/235 (0%)

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
           D       R+   A+S L+      G     ++ Y  M + GV+PN++ YN +++ + + 
Sbjct: 169 DMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKD 228

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
                 +TI K++ ++ +SP+  TY S++  + R    +  L V+ +M ++G + +   Y
Sbjct: 229 GNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY 288

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           +TL+    D G  +EAF++  +M       P + T +  I      G   +A  +F +M 
Sbjct: 289 STLINGLCDSGRVNEAFDLIREM-ILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMK 347

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
             G EPN++  T+LI     +      +   +R+   G+ P+      L+N++ +
Sbjct: 348 NKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVE 402


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 169/368 (45%), Gaps = 16/368 (4%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S +V+ YN  +  F K     +AE L+D+ML RG+ P  +T+S++I      N  + A
Sbjct: 286 KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAA 345

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              F  M + GC PD +T++++I  Y RA  V+    L           +   ++TLI  
Sbjct: 346 EHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHG 405

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQV-KTIYKEMTD-- 333
           +   G+ +   ++ +EM + GV PN++T N LLD +   G+ K   ++ K + K   D  
Sbjct: 406 FCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDID 465

Query: 334 -----NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
                NG+ P+  TY  L+          +   +Y EM  +G+      YN+++      
Sbjct: 466 ASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQ 525

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
              DEA ++F+ M  S++  P+  TF+++I      G+V +   +F EM   G   N   
Sbjct: 526 SRLDEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAIT 584

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT-PKEELGKLVECVE 507
             +LI  + K    +  +     +   G+ PD      + N++T    KEEL + V  +E
Sbjct: 585 YITLIHGFRKVGNINGALDIFQEMMASGVYPDTI---TIRNMLTGLWSKEELKRAVAMLE 641

Query: 508 KSNSKLGY 515
                +GY
Sbjct: 642 DLQMSVGY 649



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 145/308 (47%), Gaps = 13/308 (4%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AA  + Y       S ++I +N  +  + + + +D   +L  +M + G+  + +T++TLI
Sbjct: 344 AAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLI 403

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                    N A +  + M S G  P+ +T ++++D     G ++ A  ++   +  K  
Sbjct: 404 HGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMD 463

Query: 268 IDPN-----------AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           ID +            ++ LI      G F     +YEEM   G+ P+ ITYN+++  + 
Sbjct: 464 IDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLC 523

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +  R  +   ++  M     SPN  T+ +L+  Y +A   +D L ++ EM  +G+  +  
Sbjct: 524 KQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI 583

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            Y TL+     VG  + A +IF++M +S    PD+ T  +M+T    + ++  A AM  +
Sbjct: 584 TYITLIHGFRKVGNINGALDIFQEMMAS-GVYPDTITIRNMLTGLWSKEELKRAVAMLED 642

Query: 437 M-LEAGFE 443
           + +  G++
Sbjct: 643 LQMSVGYQ 650



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 155/330 (46%), Gaps = 14/330 (4%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           + + MK F  C  L  A   F  +   G  P  VTFSTL+    + +  ++A++ F +M 
Sbjct: 116 FTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQM- 174

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C P+ +T++++++   R G V  A  L DR   +  + +   + T++      G+  
Sbjct: 175 ---CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTV 231

Query: 288 GCLNVYEEMKAIG-VKPNMITY-----NNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNW 340
             LN+  +M+ +  +KPN++ +       +++    + R  + + + +EM +   +SP+ 
Sbjct: 232 SALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDV 291

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY +L+ A+ +     +   +Y EM  +G+  S   Y++++         D A  +F  
Sbjct: 292 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYL 351

Query: 401 MKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           M +++ C PD  TF+++I    CR K V +   + +EM EAG   N    T+LI  + + 
Sbjct: 352 M-ATKGCSPDIITFNTLIA-GYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQV 409

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLN 489
              +     L  +   G+ P+   C  LL+
Sbjct: 410 GDLNAAQDLLQEMVSSGVCPNVVTCNTLLD 439



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 141/345 (40%), Gaps = 56/345 (16%)

Query: 190 DMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
           D+  +  KP+ VTF+TL++         +AV   +RM   G  P+ +TY +++D   + G
Sbjct: 169 DLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMG 228

Query: 250 NVEMAFGLYDRARNEKWRIDPNA------------------------------------- 272
           +   A  L  R   E   I PN                                      
Sbjct: 229 DTVSALNLL-RKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKI 287

Query: 273 ------FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
                 ++ LI  +   G F     +Y+EM   G+ P+ ITY++++D   +  R    + 
Sbjct: 288 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEH 347

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           ++  M   G SP+  T+ +L+  Y RA+  +D + +  EM E G+  +   Y TL+    
Sbjct: 348 MFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFC 407

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA------ 440
            VG  + A ++ ++M SS  C P+  T ++++      GK+ +A  MF  M ++      
Sbjct: 408 QVGDLNAAQDLLQEMVSSGVC-PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDA 466

Query: 441 -----GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
                G EP++     LI       +  +       +P  GI PD
Sbjct: 467 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 511


>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 537

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 160/327 (48%), Gaps = 12/327 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  + +  K R  D A  L D M  R V+    TF+ LI       L ++AV  F RM 
Sbjct: 154 YNEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
            +GC PD + +S +I    R      A   +D  + +++  D   ++ L++ +  AG   
Sbjct: 214 DYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSLK-DRFEPDVIVYTNLVRGWCRAGEIS 272

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V+++MK  G++PN+ TY+ ++D + R  +  +   ++ +M D+G +PN  T+ +L+
Sbjct: 273 EAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLM 332

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSEN 406
           R + +A   E  L VY +MK+ G +     YN L+   C D    + A ++   M   + 
Sbjct: 333 RVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIETHCRDENL-ENAVKVLNTM-IKKK 390

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
           C+ ++ TF+++      +  V+ A  M+++M+EA  EPN      L++ +  ++ TD V+
Sbjct: 391 CEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFAGSKSTDMVL 450

Query: 467 RALNRLPELGITPD--------DRFCG 485
           +    + +  + P+          FCG
Sbjct: 451 KMKKDMDDKEVEPNVNTYRLLVTMFCG 477



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 120/238 (50%), Gaps = 1/238 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  Y++ +    +C  + +A  +F DMLD G  P+ +TF+ L+        P K ++ + 
Sbjct: 290 VYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYN 349

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M   GC+PD +TY+ +I+ + R  N+E A  + +    +K  ++ + F+T+ +      
Sbjct: 350 QMKKLGCEPDTITYNFLIETHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKR 409

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           + +G   +Y +M     +PN +TYN L+     +K    V  + K+M D  + PN NTY 
Sbjct: 410 DVNGAHRMYSKMMEAKCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNVNTYR 469

Query: 345 SLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            L+  +    +  +   +++EM +EK +  S++LY  +LA     G   +  E+ E M
Sbjct: 470 LLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKM 527



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 155/308 (50%), Gaps = 3/308 (0%)

Query: 137 IILNNMTNPDTAALALTYFTN-KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           I+++N++    A+ A ++F + K +   +VI+Y   ++ + +  ++ +AE++F DM   G
Sbjct: 226 IVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAG 285

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           ++P+  T+S +I         ++A + F  M   GC P+A+T+++++  + +AG  E   
Sbjct: 286 IEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVL 345

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            +Y++ +      D   ++ LI+ +    N +  + V   M     + N  T+N +   +
Sbjct: 346 QVYNQMKKLGCEPDTITYNFLIETHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYI 405

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            + +       +Y +M +    PN  TY  L+R +  ++  +  L + ++M +K ++ +V
Sbjct: 406 EKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNV 465

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMF 434
             Y  L+ M   +G+ + A+++F++M   E C   S +   M+     R G++ + E + 
Sbjct: 466 NTYRLLVTMFCGMGHWNNAYKLFKEM-VEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELV 524

Query: 435 NEMLEAGF 442
            +M++ G 
Sbjct: 525 EKMIQKGL 532


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 165/353 (46%), Gaps = 38/353 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +NV +    +  D + A  L D M+ +G+KP  VT+++++     + + +KA E F
Sbjct: 129 DVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVF 188

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M  FG  PD  +++ +I  + R G +E A  +Y   R+   + D  +FS LI L+   
Sbjct: 189 KEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARR 248

Query: 284 GNFD-----------------------------------GCLNVYEEMKAIGVKPNMITY 308
           G  D                                     L V +EM   G  P+++TY
Sbjct: 249 GKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTY 308

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N LL+ + + +R    + +  EM + G+ P+  T+ +L+  Y      +  L ++  M  
Sbjct: 309 NTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLN 368

Query: 369 KGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
           + ++  +  YNTL+  MC   G  D+A ++++DM S E   P+  T+S +I     +G+V
Sbjct: 369 QRLRPDIVTYNTLIDGMCRQ-GDLDKANDLWDDMHSRE-IFPNHVTYSILIDSHCEKGQV 426

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +A    +EM+  G  PN+    S+I+ Y ++       + L ++    ++PD
Sbjct: 427 EDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPD 479



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 143/280 (51%), Gaps = 1/280 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +    K R L  AE L ++M +RGV PD  TF+TLI    +    +KA++ F
Sbjct: 304 DVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLF 363

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M +    PD +TY+++ID   R G+++ A  L+D   + +   +   +S LI  +   
Sbjct: 364 DTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEK 423

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +      +EM   G+ PN++TYN+++    R+    + +   ++M  N +SP+  TY
Sbjct: 424 GQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITY 483

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+  Y +     D   +   M+++ +Q  V  YN L+   +  G   EA  IFE M  
Sbjct: 484 NTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKM-C 542

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
           ++  +PD +T+ SMI      G   EA  + +EML+ G E
Sbjct: 543 AKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGKE 582



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 157/339 (46%), Gaps = 6/339 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWF 223
           ++Y + +  F +   +  A R+ D+M+  G  PD VT++TL++  C     L  + +   
Sbjct: 271 VIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL--L 328

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  PD  T++++I  Y   G ++ A  L+D   N++ R D   ++TLI      
Sbjct: 329 NEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQ 388

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+ D   +++++M +  + PN +TY+ L+D+     +         EM + G+ PN  TY
Sbjct: 389 GDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTY 448

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S+++ Y R+          ++M    +   +  YNTL+          +AF++  +M  
Sbjct: 449 NSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLL-NMME 507

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            E  QPD  T++ +I   S  G V EA  +F +M   G EP+ +   S+I  +  A  + 
Sbjct: 508 KEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSK 567

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 502
           +  +  + + + G     R  G +  V  Q   E L ++
Sbjct: 568 EAFQLHDEMLQRG-KEKRRAAGTVQFVNIQNSAESLKQM 605



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 140/307 (45%), Gaps = 5/307 (1%)

Query: 150 LALTYFTNKLKASKEVILYNVTMKVFRKCRDL--DKAERLFDDMLDRGVKPDNVTFSTLI 207
           LA   +     ++ EV  Y + + V   C+ L  DK + +  +M  R V PD VT + ++
Sbjct: 78  LAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMV 137

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                      A+   + M S G  P  +TY+S++    R+G  + A+ ++    +    
Sbjct: 138 DARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVA 197

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D  +F+ LI  +   G  +  L +Y+EM+  G+KP++++++ L+    R  +       
Sbjct: 198 PDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAY 257

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCA 386
            +EM   GL P+   Y  ++  + RA    D L V  EM   G    V  YNTLL  +C 
Sbjct: 258 LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK 317

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           +    D A  +  +M+      PD  TF+++I      GK+ +A  +F+ ML     P++
Sbjct: 318 ERRLLD-AEGLLNEMR-ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDI 375

Query: 447 FVLTSLI 453
               +LI
Sbjct: 376 VTYNTLI 382



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 166/390 (42%), Gaps = 10/390 (2%)

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           P    F  LI     +  P +A E F  +        A   ++++ A  RAG   +A   
Sbjct: 23  PQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAADA 82

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
           Y    +    ++    + ++  Y  A  FD    V  EM+   V P+++T+N ++D   R
Sbjct: 83  YRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFR 142

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
           A        +   M   GL P   TY S+L+   R+   +    V++EM + G+   V  
Sbjct: 143 AGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRS 202

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           +  L+     VG  +EA +I+++M+     +PD  +FS +I + + RGK+  A A   EM
Sbjct: 203 FTILIGGFCRVGEIEEALKIYKEMR-HRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREM 261

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK- 496
              G  P+  + T +I  + +A    D +R  + +   G  PD      LLN + +  + 
Sbjct: 262 RCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRL 321

Query: 497 -EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID 555
            +  G L E  E+           L+    IEG   K A +LF+++     +       D
Sbjct: 322 LDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDK-ALQLFDTMLNQRLRP------D 374

Query: 556 LCVNLNLLENACKLLELGLTLEVYTDIQSR 585
           +     L++  C+  +L    +++ D+ SR
Sbjct: 375 IVTYNTLIDGMCRQGDLDKANDLWDDMHSR 404



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 56/100 (56%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S ++I YN  +  + K   +  A +L + M    V+PD VT++ LI+   ++    +A
Sbjct: 475 KVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEA 534

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD 259
              FE+M + G +PD  TY SMI+ +  AGN + AF L+D
Sbjct: 535 GWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHD 574


>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
          Length = 738

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 150/313 (47%), Gaps = 1/313 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I YN+ ++ + K R L+KAE ++  +L+    P   T++ L+         ++A    
Sbjct: 317 DIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVI 376

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  P+A  Y++ +D   +A   E A  +Y R + E+ R +   F+ +I +YG A
Sbjct: 377 SEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKA 436

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                 + V+ EMK+IG KPN+ TY  L++   R     + + +++EM   G  P+   Y
Sbjct: 437 KQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAY 496

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ AY RA   +    ++  M+  G +     YN L+      G  ++A  +FE++K 
Sbjct: 497 NALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELK- 555

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                P   +   ++   +  G  +  E +  ++ ++G  P+ F L +++  Y +A R D
Sbjct: 556 QRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLD 615

Query: 464 DVVRALNRLPELG 476
           D+ R L  +   G
Sbjct: 616 DMERLLAAMERRG 628



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 179/406 (44%), Gaps = 27/406 (6%)

Query: 113 SATEDDVFSVLRCLGDDFLE-----QDCVIILNNMTN-PDTAALALTYFTNKLKASKEVI 166
           S   D VF VL  +  D LE      D   I  ++ N P T  L    F +         
Sbjct: 238 SGFVDGVFPVLSPMAQDILEFVQKGTDVAKIWESLDNIPSTHNL----FDD--------- 284

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRG-VKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           L NV ++ FR  +  D    + + +L R   +PD + ++ LI         NKA   +  
Sbjct: 285 LVNVAVQ-FRMNKKWDLIIPVCEWILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMA 343

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTA 283
           +    C P   TY+ ++ AY  AG++  A G+    R     I PNA  ++  +     A
Sbjct: 344 LLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHG--IPPNATVYNAYLDGLLKA 401

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              +  + VY+ MK    + N  T+  +++  G+AK+P     ++ EM   G  PN  TY
Sbjct: 402 RCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTY 461

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ A+ R    E    V+ EM++ G +  V  YN L+   +  G    A EIF  M+ 
Sbjct: 462 TALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQH 521

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
              C+PD  +++ ++      G   +AEA+F E+ + G  P +     L+  + ++    
Sbjct: 522 M-GCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNAT 580

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 508
                + +L + G+TPD      +LN   +  + +++ +L+  +E+
Sbjct: 581 RCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAMER 626



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 118/273 (43%), Gaps = 2/273 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +  Y   +  F +    +KAE +F++M   G +PD   ++ L+       LP  A E F 
Sbjct: 458 ICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFS 517

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   GC+PD  +Y+ ++DAYGRAG  E A  +++  +         +   L+  +  +G
Sbjct: 518 LMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSG 577

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N   C  V  ++   G+ P+    N +L+   RA R   ++ +   M   G   +  TY 
Sbjct: 578 NATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAMERRG-DADVGTYN 636

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
             + AYGRA Y     + +  +  +G+   V  +   +   A          + E+M  +
Sbjct: 637 VAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDA 696

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
             C PD+ T   ++  CS   +V +  A+   M
Sbjct: 697 -GCYPDAGTARVLLAACSDERQVEQVTAIVRSM 728


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 153/315 (48%), Gaps = 3/315 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFER 225
           +YN  +    K   +D A  +   ML+R   PD +T+++LI  C + N L ++A +  E+
Sbjct: 129 VYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNAL-DEARKLMEK 187

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  PD + Y+++++   +   +E    L +         D  +++T++     +G 
Sbjct: 188 MKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGK 247

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           ++    + E+M      P+++TYN+L+D   +  +  + + + ++M     +P   TY +
Sbjct: 248 YEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTT 307

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  + RA    D   V  +M + G+   +  YN LL      G  +EA E+ E M   +
Sbjct: 308 LIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVM-VEK 366

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           +C PD  T+S ++      GKV +A  +   MLE G +PNL    ++I  + KA + D+ 
Sbjct: 367 DCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEG 426

Query: 466 VRALNRLPELGITPD 480
            + L  + E+  TPD
Sbjct: 427 HKVLELMKEVSCTPD 441



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 160/336 (47%), Gaps = 21/336 (6%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNK 218
           K   +V+ YN  M  F K   +D+AERL +DM+ R   P  +T++TLI   +R + L + 
Sbjct: 262 KCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLAD- 320

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A    E M   G  PD +TY+ ++D   +AG +E A  L +    +    D   +S L+ 
Sbjct: 321 AYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVN 380

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
                G  D    + E M   G +PN++T+N ++D   +A +  +   + + M +   +P
Sbjct: 381 GLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTP 440

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  TY++L+  Y +A   +D  ++       G+      Y+++L      G  +EA E+ 
Sbjct: 441 DVVTYSTLIDGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQEVM 494

Query: 399 EDMKSSENCQPDSWTFSSMI-TICSC-RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
            D+ + + C P S  ++ +I  +C   RG   EA  M   M E G EPNL+  + LI   
Sbjct: 495 -DLMTKQGCPPTSSHYALIIGGLCDVERG--DEALKMLQVMSERGCEPNLYTYSILINGL 551

Query: 457 GKAQRTDDVVRALNRLPELGITPD--------DRFC 484
            K +R +D +  L+ + E G  PD        D FC
Sbjct: 552 CKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFC 587



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 140/293 (47%), Gaps = 7/293 (2%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           + +V+ Y++ +    K   +D A  L + ML+RG +P+ VTF+T+I         ++  +
Sbjct: 369 APDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHK 428

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             E M    C PD +TYS++ID Y +A  ++ AF +   +       D  ++S++++   
Sbjct: 429 VLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGISP------DKASYSSMLEGLC 482

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
           + G  +    V + M   G  P    Y  ++  +   +R  +   + + M++ G  PN  
Sbjct: 483 STGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLY 542

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY+ L+    + +  ED ++V   M EKG    V  Y +L+     +   D A++ F+ M
Sbjct: 543 TYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTM 602

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           + S  C+PD   ++ +I+     G V +A  +   MLE G  P+     SL++
Sbjct: 603 RDS-GCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMR 654



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 148/319 (46%), Gaps = 4/319 (1%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           + ++ML R   PD +T +T++         ++A+  F       C P A TY  +I    
Sbjct: 46  IANEMLARRFSPDVITHNTILKAYCQIGDLDRALSHFR--GKMWCSPTAFTYCILIHGLC 103

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           +   ++ A+ L D    +    D   ++ LI      G  D   NV + M      P++I
Sbjct: 104 QCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVI 163

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TY +L+    +     + + + ++M ++GL+P+   Y +LL    +    E+   +  EM
Sbjct: 164 TYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEM 223

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
            E G +     YNT++A   + G  +EA +I E M   + C PD  T++S++       K
Sbjct: 224 VEAGREPDTFSYNTVVACLCESGKYEEAGKILEKM-IEKKCGPDVVTYNSLMDGFCKVSK 282

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
           + EAE +  +M+     P +   T+LI  + +A R  D  R +  + + GI+PD     C
Sbjct: 283 MDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNC 342

Query: 487 LLNVMTQTPK-EELGKLVE 504
           LL+ + +  K EE  +L+E
Sbjct: 343 LLDGLCKAGKLEEAHELLE 361



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 153/345 (44%), Gaps = 9/345 (2%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           ++   +  D  A A     +  KA  S +++ YN  +    K   L++A  L + M+++ 
Sbjct: 308 LIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKD 367

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
             PD VT+S L++        + A    E M   GC P+ +T+++MID + +AG V+   
Sbjct: 368 CAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGH 427

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            + +  +      D   +STLI  Y  A        +      +G+ P+  +Y+++L+ +
Sbjct: 428 KVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAI------LGISPDKASYSSMLEGL 481

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
               +  + + +   MT  G  P  + YA ++        G++ L + + M E+G + ++
Sbjct: 482 CSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNL 541

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y+ L+         ++A  +  D+   + C PD  T++S+I       K+  A   F 
Sbjct: 542 YTYSILINGLCKTKRVEDAINVL-DVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFK 600

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            M ++G EP+      LI  + ++   +  +  +  + E G  PD
Sbjct: 601 TMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPD 645



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 120/281 (42%), Gaps = 11/281 (3%)

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
           M   P +   +F    S    P   TY ++I  + RAGN +M   + +     ++  D  
Sbjct: 1   MKVRPLEGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVI 60

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
             +T++K Y   G+ D  L+ +     +   P   TY  L+  + + +R  +   +  EM
Sbjct: 61  THNTILKAYCQIGDLDRALSHFR--GKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEM 118

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
                 P+   Y  L+    +    +   +V + M E+     V  Y +L+  C      
Sbjct: 119 IQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNAL 178

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           DEA ++ E MK S    PD+  +++++     + ++ E   +  EM+EAG EP+ F   +
Sbjct: 179 DEARKLMEKMKES-GLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNT 237

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 484
           ++ C  ++ + ++  + L ++ E    PD        D FC
Sbjct: 238 VVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFC 278



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 67/134 (50%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D+A ++   M +RG +P+  T+S LI+          A+   + M   GC PD  TY+S+
Sbjct: 523 DEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSL 582

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           ID + +   ++ A+  +   R+     D  A++ LI  +  +GN +  + V + M   G 
Sbjct: 583 IDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGC 642

Query: 302 KPNMITYNNLLDTM 315
            P+  TY +L+ ++
Sbjct: 643 NPDAATYFSLMRSL 656



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 35/219 (15%)

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
           RP +  + ++E   +   P+ +TY +L+  + RA   +  L +  EM  +     V  +N
Sbjct: 4   RPLEGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHN 63

Query: 380 TLLAM-------------------CADVGYT--------------DEAFEIFEDMKSSEN 406
           T+L                     C+   +T              DEA+++ ++M   ++
Sbjct: 64  TILKAYCQIGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEM-IQKD 122

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
           C PD+  ++ +I      GK+  A  +   MLE    P++   TSLI    +    D+  
Sbjct: 123 CHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEAR 182

Query: 467 RALNRLPELGITPDDRFCGCLLN-VMTQTPKEELGKLVE 504
           + + ++ E G+TPD      LLN +  Q   EE+ KL+E
Sbjct: 183 KLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLE 221



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 80/169 (47%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +++A+ + D M  +G  P +  ++ +I         ++A++  + M   GC+P+  TYS 
Sbjct: 487 VEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSI 546

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I+   +   VE A  + D    +    D   +++LI  +      D     ++ M+  G
Sbjct: 547 LINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSG 606

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
            +P+ + YN L+    ++    +   + + M + G +P+  TY SL+R+
Sbjct: 607 CEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRS 655


>gi|302765062|ref|XP_002965952.1| hypothetical protein SELMODRAFT_84012 [Selaginella moellendorffii]
 gi|300166766|gb|EFJ33372.1| hypothetical protein SELMODRAFT_84012 [Selaginella moellendorffii]
          Length = 533

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 186/414 (44%), Gaps = 40/414 (9%)

Query: 95  YDTRYNSLVKLAADLDSCS--ATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALAL 152
           Y  RY     L   +D C     E+ V   +RCL  + L + C  ++ N+  P     A 
Sbjct: 105 YLGRYG----LQLVIDECGRLLQENRVEECIRCL--ERLAK-CGFVVKNLVKPTLCMEAC 157

Query: 153 TYFTNKLKASKEVILY-------NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
               N   A +   L        N+ M+ FR   DL    ++F  +   GV+PD  ++  
Sbjct: 158 ARMHNTALALRYACLLPDILQSCNMIMQKFRDQGDLQSVFQVFQALESTGVRPDMYSYCI 217

Query: 206 LI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
           LI +C R  +   KA   FE +   G   +    +SM++A+  AGN++    LY + +  
Sbjct: 218 LIDACGRCGD-AEKATAIFEGLLKAGTVLNVYVCNSMMNAH--AGNIQHVLRLYRQMQGS 274

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM-GRAKRPWQ 323
               D   ++ + K    + N    L +YEE+KA  +K N+++Y  L+  + G AK   +
Sbjct: 275 GIAADVTTYNIVFKACRLSKNPVLALRLYEELKAKEIKMNVLSYGTLIQVIFGEAKMLDR 334

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
           V  +  +M   G+ PN  T+ SL+ A  +    E TL VY++M + G   +   YN LL+
Sbjct: 335 VFQMKHDMDSTGIVPNVVTWTSLVGACSKGALVEKTLQVYQDMVQAGCTPNAFTYNFLLS 394

Query: 384 MCADVGYTDEAFEIFEDMKS-----------------SENCQPDSWTFSSMITICSCRGK 426
            C D G +D+A ++F + K+                 SE  +PDS  +++M+  C    K
Sbjct: 395 ACVDGGQSDKAHKLFREWKTSGRILAGIEVQDESAIFSEWVRPDSVAYNTMMRACDKLPK 454

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             +AEA+  EM+ +G  P+      LI  YG        V+A  R+   GI  D
Sbjct: 455 --QAEAVMQEMVSSGLRPDKRSWCILINSYGCNGDKQGAVQAFQRMGRSGIIAD 506



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 35/247 (14%)

Query: 144 NPDTAALALTYFTNKLKASK---EVILYNVTMKV-FRKCRDLDKAERLFDDMLDRGVKPD 199
           NP    LAL  +  +LKA +    V+ Y   ++V F + + LD+  ++  DM   G+ P+
Sbjct: 295 NP---VLALRLY-EELKAKEIKMNVLSYGTLIQVIFGEAKMLDRVFQMKHDMDSTGIVPN 350

Query: 200 NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD 259
            VT+++L+       L  K ++ ++ M   GC P+A TY+ ++ A    G  + A  L+ 
Sbjct: 351 VVTWTSLVGACSKGALVEKTLQVYQDMVQAGCTPNAFTYNFLLSACVDGGQSDKAHKLF- 409

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG--VKPNMITYNNLLDTMGR 317
                +W+              T+G     + V +E       V+P+ + YN    TM R
Sbjct: 410 ----REWK--------------TSGRILAGIEVQDESAIFSEWVRPDSVAYN----TMMR 447

Query: 318 A--KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           A  K P Q + + +EM  +GL P+  ++  L+ +YG     +  +  ++ M   G+   V
Sbjct: 448 ACDKLPKQAEAVMQEMVSSGLRPDKRSWCILINSYGCNGDKQGAVQAFQRMGRSGIIADV 507

Query: 376 TLYNTLL 382
             Y  ++
Sbjct: 508 VAYTAII 514



 Score = 42.7 bits (99), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V+PD+V ++T++     + LP +A    + M S G  PD  ++  +I++YG  G+ + A 
Sbjct: 435 VRPDSVAYNTMMRAC--DKLPKQAEAVMQEMVSSGLRPDKRSWCILINSYGCNGDKQGAV 492

Query: 256 GLYDRARNEKWRIDPNAFSTLIKL 279
             + R        D  A++ +IK+
Sbjct: 493 QAFQRMGRSGIIADVVAYTAIIKV 516


>gi|297846140|ref|XP_002890951.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336793|gb|EFH67210.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 689

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 181/371 (48%), Gaps = 20/371 (5%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           ++ A R+   +LD G  P+ VTF TLI+        ++A E F+ M   G  PD + YS+
Sbjct: 159 IEVASRMLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFELFKVMEQRGIAPDLIAYST 218

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +ID Y +AG + M   L+ +A ++  ++D   FS+ I +Y   G      +VY+ M   G
Sbjct: 219 LIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKFGYLTTAFDVYKRMLCQG 278

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA---YGRARYGE 357
           + PN++TY  L+  + +  R ++   IY ++   GL P+  TY+SL+     YG  R G 
Sbjct: 279 ISPNVVTYTILIKGLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSG- 337

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
              ++Y +M + G    V +Y  L+      G    A   F      ++ +P+   F+S+
Sbjct: 338 --FALYEDMIKMGYPPDVVIYGVLVDGLCKQGLMLHALR-FSVKTLGQSIRPNVVVFNSL 394

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I       +  EA  +F  M   G +P++  +T+L++      R  + +    R+ ++G+
Sbjct: 395 IDGWCRLNRCDEALKVFRLMGIYGIKPDVATITTLMRVTVMEGRLKEGLFLFFRMFKMGL 454

Query: 478 TPDD-RFCGCLLNVMTQTPKEELG-KLVECVEKSN-----SKLGYVVKLLLEEQDIEGDF 530
            PD   FC  L++   +  K  +G +L + ++++      +    V+ LL + Q +E   
Sbjct: 455 EPDAVAFC-TLMDAFCKNMKPTIGLQLFDLMQRNKIPADIAVCNVVINLLFKGQSVE--- 510

Query: 531 KKEATELFNSI 541
             EA++ FN++
Sbjct: 511 --EASKFFNNL 519



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 139/346 (40%), Gaps = 36/346 (10%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           + ++I Y+  +  + K   L    +LF   L +GVK D V FS+ I           A +
Sbjct: 210 APDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKFGYLTTAFD 269

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            ++RM   G  P+ +TY+ +I    + G +  AFG+Y +            +S+LI  + 
Sbjct: 270 VYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFC 329

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             GN      +YE+M  +G  P+++ Y  L+D + +            +     + PN  
Sbjct: 330 KYGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLCKQGLMLHALRFSVKTLGQSIRPNVV 389

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            + SL+  + R    ++ L V+R M   G++  V    TL+ +    G   E   +F  M
Sbjct: 390 VFNSLIDGWCRLNRCDEALKVFRLMGIYGIKPDVATITTLMRVTVMEGRLKEGLFLFFRM 449

Query: 402 KSSENCQPDSWTFSSM----------------------------ITICSC------RGK- 426
                 +PD+  F ++                            I +C+       +G+ 
Sbjct: 450 -FKMGLEPDAVAFCTLMDAFCKNMKPTIGLQLFDLMQRNKIPADIAVCNVVINLLFKGQS 508

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           V EA   FN +LE   EP++    ++I  Y   +R D+  R    L
Sbjct: 509 VEEASKFFNNLLEGKMEPDIVTYNTMICGYCSLRRLDEAARIFEML 554



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 137/310 (44%), Gaps = 9/310 (2%)

Query: 162 SKEVILYNVTMKVFRKCRD--LDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNK 218
           S  V+ Y + +K    C+D  + +A  ++  +L RG++P  VT+S+LI    +  NL   
Sbjct: 280 SPNVVTYTILIKGL--CQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFCKYGNL-RS 336

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
               +E M   G  PD + Y  ++D   + G +  A     +   +  R +   F++LI 
Sbjct: 337 GFALYEDMIKMGYPPDVVIYGVLVDGLCKQGLMLHALRFSVKTLGQSIRPNVVVFNSLID 396

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            +      D  L V+  M   G+KP++ T   L+       R  +   ++  M   GL P
Sbjct: 397 GWCRLNRCDEALKVFRLMGIYGIKPDVATITTLMRVTVMEGRLKEGLFLFFRMFKMGLEP 456

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +   + +L+ A+ +       L ++  M+   +   + + N ++ +       +EA + F
Sbjct: 457 DAVAFCTLMDAFCKNMKPTIGLQLFDLMQRNKIPADIAVCNVVINLLFKGQSVEEASKFF 516

Query: 399 EDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            ++   +  +PD  T+++MI   CS R ++ EA  +F  +    F PN   LT LI    
Sbjct: 517 NNLLEGK-MEPDIVTYNTMICGYCSLR-RLDEAARIFEMLKFTPFGPNAVTLTILIHTLC 574

Query: 458 KAQRTDDVVR 467
           K    D  +R
Sbjct: 575 KNSDMDGALR 584



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 117/281 (41%), Gaps = 9/281 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+++N  +  + +    D+A ++F  M   G+KPD  T +TL+    M     + +  F 
Sbjct: 388 VVVFNSLIDGWCRLNRCDEALKVFRLMGIYGIKPDVATITTLMRVTVMEGRLKEGLFLFF 447

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           RM   G +PDA+ + +++DA+ +     +   L+D  +  K   D    + +I L     
Sbjct: 448 RMFKMGLEPDAVAFCTLMDAFCKNMKPTIGLQLFDLMQRNKIPADIAVCNVVINLLFKGQ 507

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           + +     +  +    ++P+++TYN ++      +R  +   I++ +      PN  T  
Sbjct: 508 SVEEASKFFNNLLEGKMEPDIVTYNTMICGYCSLRRLDEAARIFEMLKFTPFGPNAVTLT 567

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L+    +    +  L +          +   L           G  DEA  IF     +
Sbjct: 568 ILIHTLCKNSDMDGALRIISPSIISYSIIIDGLCKR--------GRVDEATNIFHQAIDA 619

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
           +   PD   ++ +I  C   G++ EA  ++  ML  G +P+
Sbjct: 620 K-ILPDVVAYAILIRGCCKVGRLVEAALLYEHMLRNGVKPD 659



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 68/351 (19%), Positives = 135/351 (38%), Gaps = 63/351 (17%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K+    +V++Y V +    K   +  A R     L + ++P+ V F++LI      N  +
Sbjct: 346 KMGYPPDVVIYGVLVDGLCKQGLMLHALRFSVKTLGQSIRPNVVVFNSLIDGWCRLNRCD 405

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +A++ F  M  +G  PD  T                                    +TL+
Sbjct: 406 EALKVFRLMGIYGIKPDVAT-----------------------------------ITTLM 430

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           ++    G     L ++  M  +G++P+ + +  L+D   +  +P     ++  M  N + 
Sbjct: 431 RVTVMEGRLKEGLFLFFRMFKMGLEPDAVAFCTLMDAFCKNMKPTIGLQLFDLMQRNKIP 490

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
            +      ++    + +  E+    +  + E  M+  +  YNT++     +   DEA  I
Sbjct: 491 ADIAVCNVVINLLFKGQSVEEASKFFNNLLEGKMEPDIVTYNTMICGYCSLRRLDEAARI 550

Query: 398 FEDMKSSENCQPDSWTFSSMI-TICS-------------------------C-RGKVSEA 430
           FE +K +    P++ T + +I T+C                          C RG+V EA
Sbjct: 551 FEMLKFTPF-GPNAVTLTILIHTLCKNSDMDGALRIISPSIISYSIIIDGLCKRGRVDEA 609

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
             +F++ ++A   P++     LI+   K  R  +       +   G+ PDD
Sbjct: 610 TNIFHQAIDAKILPDVVAYAILIRGCCKVGRLVEAALLYEHMLRNGVKPDD 660



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/193 (20%), Positives = 85/193 (44%), Gaps = 8/193 (4%)

Query: 147 TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           T  L L     + K   ++ + NV + +  K + +++A + F+++L+  ++PD VT++T+
Sbjct: 475 TIGLQLFDLMQRNKIPADIAVCNVVINLLFKGQSVEEASKFFNNLLEGKMEPDIVTYNTM 534

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
           I         ++A   FE +      P+A+T + +I    +  +++ A     R  +   
Sbjct: 535 ICGYCSLRRLDEAARIFEMLKFTPFGPNAVTLTILIHTLCKNSDMDGAL----RIISPSI 590

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
                    L K     G  D   N++ +     + P+++ Y  L+    +  R  +   
Sbjct: 591 ISYSIIIDGLCK----RGRVDEATNIFHQAIDAKILPDVVAYAILIRGCCKVGRLVEAAL 646

Query: 327 IYKEMTDNGLSPN 339
           +Y+ M  NG+ P+
Sbjct: 647 LYEHMLRNGVKPD 659


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 166/359 (46%), Gaps = 5/359 (1%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD---RGVKPDNVTFSTLISCARMNN 214
           +L  + +V+ YN  +K F   +  ++A  L   M D   R   P+ V+++T+I+      
Sbjct: 158 ELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEG 217

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
             +KA   F  M   G  P+ +TY+++ID   +A  V+ A G++ +  ++  + D + ++
Sbjct: 218 QVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYN 277

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            LI  Y + G +   + + EEM A G+KP+  TY +LL+ +    R  + +  +  M   
Sbjct: 278 CLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRK 337

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G+ PN   Y  L+  Y       +   +   M E G+     ++N +    A     DEA
Sbjct: 338 GIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEA 397

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
             IF  MK  +   PD   F ++I      G+V +A   FN+M+  G  PN+FV  SL+ 
Sbjct: 398 MHIFNKMK-QQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVY 456

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQTPKEELGKLVECVEKSNSK 512
                 + +        +   GI PD  F   +L N+ T+    +  +L++ +E+  ++
Sbjct: 457 GLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTR 515



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/456 (23%), Positives = 192/456 (42%), Gaps = 49/456 (10%)

Query: 118 DVFSVLRCLGDDFLEQDCVI---ILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTM 172
           +V  +L  +    L+ DC     +LN + N      A  +F + ++   +  V +Y + +
Sbjct: 291 EVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILI 350

Query: 173 KVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCD 232
             +     L +   L + M++ G+ PD+  F+ + +      + ++A+  F +M   G  
Sbjct: 351 HGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLS 410

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNE--------------------KW------ 266
           PD + + ++IDA  + G V+ A   +++  NE                    KW      
Sbjct: 411 PDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEF 470

Query: 267 ---------RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
                    R D   F+T++    T G       + + M+ +G +P++I+Y  L+     
Sbjct: 471 YFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCL 530

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
             R  +       M   GL P+  TY +LL  Y RA   +D   V+REM   G+   V  
Sbjct: 531 VGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVT 590

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           Y+T+L          EA E++ +M +S   Q + W ++ ++   S    V EA  +F  +
Sbjct: 591 YSTILHGLFTTRRFSEAKELYLNMITSGK-QWNIWIYNIILNGLSKNNCVDEAFKLFQSL 649

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL--NVMTQTP 495
               F+  +     +I    K+ R +D +     +   G+ P D F  CL+  N++ +  
Sbjct: 650 CSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVP-DVFTYCLIAENLIEEGY 708

Query: 496 KEELGKLVECVEKS----NSK-LGYVVKLLLEEQDI 526
            EE   L   +EKS    NS+ L  +V+ LL   DI
Sbjct: 709 LEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDI 744



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 149/349 (42%), Gaps = 50/349 (14%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVE------WFERMP---SFG 230
           LD A +LFD +L        + F+ L++  +R++   +   E       F RM    +  
Sbjct: 30  LDDALKLFDGLLTHARPASIIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIK 89

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
             PD  TYS +I  + R G +E  F  +       WR++    + L+K    A      +
Sbjct: 90  VTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAM 149

Query: 291 NV-YEEMKAIGVKPNMITYNNLL--------------------DTMGRAKRPWQVK---- 325
           ++  + M  +G  P++++YN LL                    D+ GR+  P  V     
Sbjct: 150 DILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATV 209

Query: 326 --------------TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
                          ++ EM D G+ PN  TY +++    +A+  +    V+++M +KG+
Sbjct: 210 INGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGV 269

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
           +     YN L+     +G   E   + E+M S+   +PD +T+ S++      G+  EA 
Sbjct: 270 KPDNDTYNCLIHGYLSIGKWKEVVRMLEEM-SAHGLKPDCYTYGSLLNYLCNNGRCREAR 328

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             F+ M+  G +PN+ +   LI  Y       ++   LN + E G++PD
Sbjct: 329 FFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPD 377



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 139/294 (47%), Gaps = 4/294 (1%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           +KA+  + +ML++G++PD V F+T++          KA    + M   G  PD ++Y+++
Sbjct: 465 EKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTL 524

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I  +   G ++ A    D   +   + D   ++TL+  Y  AG  D    V+ EM   G+
Sbjct: 525 IGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGI 584

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            P ++TY+ +L  +   +R  + K +Y  M  +G   N   Y  +L    +    ++   
Sbjct: 585 TPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFK 644

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           +++ +  K  QL +T +N ++      G  ++A  +F  + SS    PD +T+  +    
Sbjct: 645 LFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATI-SSYGLVPDVFTYCLIAENL 703

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
              G + E + +F+ M ++G  PN  +L +L++   +     D+ RA   L +L
Sbjct: 704 IEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVR---RLLHRGDITRAGAYLSKL 754


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 166/344 (48%), Gaps = 3/344 (0%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
           ++  M  PD   ++L     + +   ++  + + +K F  C  L  A   F  +   G+ 
Sbjct: 88  VVVRMERPDLV-ISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLH 146

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           PD VTF+TL+    + +  ++A+  F +M    C P+ +T++++++   R G +  A  L
Sbjct: 147 PDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMG 316
            DR   +  +     + T++      G+    LN+  +M+ +  + PN++ Y+ ++D++ 
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLC 266

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +  R    + ++ EM + G+ P+  TY S++  +  +    D   + +EM E+ +   V 
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            YN L+      G   EA E++++M       P++ T+SSMI     + ++  AE MF  
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEML-PRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           M   G  PNL    +LI  Y  A+R DD +  L+ + E G+  D
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 151/325 (46%), Gaps = 33/325 (10%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S +V+ YN  +  F K     +AE L+D+ML RG+ P+ +T+S++I      N  + A
Sbjct: 320 KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAA 379

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              F  M + GC P+ +T++++ID Y  A  ++    L           D   ++TLI  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQV-KTIYKEMTDNG 335
           +   G+ +  L++ +EM + G+ P+++T + LLD +   G+ K   ++ K + K   D  
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
            S  +N                            G++  V  YN L++   + G   EA 
Sbjct: 500 ASHPFN----------------------------GVEPDVQTYNILISGLINEGKFLEAE 531

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           E++E+M       PD+ T+SSMI     + ++ EA  MF+ M    F PN+   T+LI  
Sbjct: 532 ELYEEM-PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 456 YGKAQRTDDVVRALNRLPELGITPD 480
           Y KA R DD +     +   GI  +
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVAN 615



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 167/426 (39%), Gaps = 83/426 (19%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD--LDKAERLFDDMLDRG 195
           +L+ +   D  + AL  F    + +    +   T  +   CR+  + +A  L D M++ G
Sbjct: 155 LLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214

Query: 196 VKPDNVTFSTLIS--CARMNN----------------LPNKAV----------------- 220
           ++P  +T+ T++   C + +                 +PN  +                 
Sbjct: 215 LQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 221 -EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              F  M   G  PD  TY+SMI  +  +G    A  L       K   D   ++ LI  
Sbjct: 275 QNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +   G F     +Y+EM   G+ PN ITY++++D   +  R    + ++  M   G SPN
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL----------------- 382
             T+ +L+  Y  A+  +D + +  EM E G+    T YNTL+                 
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQ 454

Query: 383 -----AMCADV-------------GYTDEAFEIFEDMKSSE----------NCQPDSWTF 414
                 +C D+             G   +A E+F+ M+ S+            +PD  T+
Sbjct: 455 EMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTY 514

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + +I+     GK  EAE ++ EM   G  P+    +S+I    K  R D+  +  + +  
Sbjct: 515 NILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGS 574

Query: 475 LGITPD 480
              +P+
Sbjct: 575 KSFSPN 580



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 127/279 (45%), Gaps = 2/279 (0%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A++ F  M      P  + +  ++    R    ++   LY +   ++ R D  +F+ LIK
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIK 122

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            + +       L+ + ++  +G+ P+++T+N LL  +    R  +   ++ +M +    P
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRP 182

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEI 397
           N  T+ +L+    R     + +++   M E G+Q +   Y T++  MC   G T  A  +
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKK-GDTVSALNL 241

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
              M+   +  P+   +S++I      G+ S+A+ +F EM E G  P+LF   S+I  + 
Sbjct: 242 LRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
            + R  D  + L  + E  I+PD      L+N   +  K
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 141/320 (44%), Gaps = 12/320 (3%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F + + L+ A  LF DML     P  V F  L+        P+  +  +++M       D
Sbjct: 54  FHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCD 113

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
             +++ +I  +     +  A   + +        D   F+TL+            LN++ 
Sbjct: 114 IYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFH 173

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           +M     +PN++T+  L++ + R  R  +   +   M ++GL P   TY +++    +  
Sbjct: 174 QMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG 233

Query: 355 YGEDTLSVYREMKEKGMQL-SVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
                L++ R+M+E    + +V +Y+ ++ ++C D G   +A  +F +M+  +   PD +
Sbjct: 234 DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD-GRHSDAQNLFTEMQ-EKGIFPDLF 291

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T++SMI      G+ S+AE +  EMLE    P++    +LI  + K  +  +     + +
Sbjct: 292 TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351

Query: 473 PELGITPD--------DRFC 484
              GI P+        D FC
Sbjct: 352 LPRGIIPNTITYSSMIDGFC 371


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 146/305 (47%), Gaps = 5/305 (1%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           DR   PD  +F+ +I          KA+E  ERM  FGC PD +T++ ++D   R   V 
Sbjct: 242 DRLYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVS 301

Query: 253 MAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
               +  R + +   + PN   F+++I  Y  AG  +  + VY +M A G+ PN +TYN 
Sbjct: 302 RGHEVLRRLQRDGVCM-PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNV 360

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L++  G+         +Y++MT     P+  T++SL+  Y R    +D L ++ +M +  
Sbjct: 361 LINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHR 420

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSE 429
           +Q +V  ++ ++        +DEA  +  ++    +  P ++ ++ +I  +C C GKV E
Sbjct: 421 IQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVIDVLCKC-GKVDE 479

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           A  +   M E G  P+ +  T LI  Y    R  + +   + + E G +PD     C ++
Sbjct: 480 ANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFIS 539

Query: 490 VMTQT 494
            + + 
Sbjct: 540 CLLKA 544



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 150/309 (48%), Gaps = 11/309 (3%)

Query: 178 CRDLDKAE--RLFDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           CR   +A+  +LFD M    G  PD    S L+S     NL + +     +   FGC  +
Sbjct: 153 CRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVE 212

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDR-ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           A  Y+ ++ +    G V     L++R  ++  +  D  +F+ +IK     G     L + 
Sbjct: 213 AYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALELV 272

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGR 352
           E M   G  P+ +T+N ++D + R     +   + + +  +G+  PN  T+ S++  Y +
Sbjct: 273 ERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCK 332

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
           A   ED ++VY +M   G+  +   YN L+     VG    A E+++ M +   C PD  
Sbjct: 333 AGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQM-TRLRCPPDVV 391

Query: 413 TFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
           TFSS+I   C C G++ +A  ++++M +   +PN++  + +I    K  R+D+ +R LN 
Sbjct: 392 TFSSLIDGYCRC-GQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLN- 449

Query: 472 LPELGITPD 480
             EL + PD
Sbjct: 450 --ELNLRPD 456



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 159/322 (49%), Gaps = 4/322 (1%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D  AL   +  ++L  S +V  +NV +K   +   + KA  L + M + G  PD VT + 
Sbjct: 231 DVVALFERWIQDRLY-SPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNI 289

Query: 206 LISCARMNNLPNKAVEWFERMPSFG-CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
           ++      N  ++  E   R+   G C P+ +T++S+I  Y +AG +E A  +Y+     
Sbjct: 290 IVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 349

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
               +   ++ LI  YG  G+    + VY++M  +   P+++T+++L+D   R  +    
Sbjct: 350 GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDA 409

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLA 383
             I+ +M  + + PN  T++ ++ +  +    ++ + +  E+  +  +     +YN ++ 
Sbjct: 410 LRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVID 469

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
           +    G  DEA  I + M+  + C+PD +T++ +I     + ++SEA   F+EM+EAG  
Sbjct: 470 VLCKCGKVDEANLIRKGMEE-KGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCS 528

Query: 444 PNLFVLTSLIQCYGKAQRTDDV 465
           P+   +   I C  KA   ++V
Sbjct: 529 PDSITVNCFISCLLKAGMPNEV 550



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 101/264 (38%), Gaps = 10/264 (3%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLN 291
           P A +   +I    R+G    A  L+D+      +  D    S L+     A   D    
Sbjct: 140 PSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASAT 199

Query: 292 VYEEMKAIGVKPNMITYNNLLDTM-GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
           +  +    G +     YN L+ ++ GR +    V    + + D   SP+  ++  +++  
Sbjct: 200 LLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIKGV 259

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
            R    +  L +   M E G       +N ++             E+   ++    C P+
Sbjct: 260 CRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPN 319

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
             TF+S+I+     GK+ +A A++N+M+ +G  PN      LI  YGK       V    
Sbjct: 320 VVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQ 379

Query: 471 RLPELGITPD--------DRFCGC 486
           ++  L   PD        D +C C
Sbjct: 380 QMTRLRCPPDVVTFSSLIDGYCRC 403



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 5/175 (2%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           +L+   +V+ ++  +  + +C  LD A R++ DM    ++P+  TFS +I      N  +
Sbjct: 383 RLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSD 442

Query: 218 KAVEWFERM---PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
           +A+     +   P     P A  Y+ +ID   + G V+ A  +      +  R D   ++
Sbjct: 443 EAIRLLNELNLRPDIA--PQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYT 500

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
            LI  Y         +  + EM   G  P+ IT N  +  + +A  P +V  + +
Sbjct: 501 ILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHVMR 555


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 173/355 (48%), Gaps = 6/355 (1%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A     YF   +  S  +  YN+ +K+  + +  DKA+ L + M ++G  PD  ++ T
Sbjct: 131 DEAESFFLYFET-MGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGT 189

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           LI+    N   + A++ F+ MP  G  PD   Y+ +ID + + G++  A  +++R     
Sbjct: 190 LINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGP 249

Query: 266 WRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
             + PN  +++ +I      G FD    ++  MK      ++ TY+ L+  +  +     
Sbjct: 250 -SVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDG 308

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
              +YKEM +NG+SP+   Y ++L  Y RA   E+ L +++ M+++G + +V  YN L+ 
Sbjct: 309 ATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIR 367

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
              +    DEA  I+E +   ++C  DS T+  ++      G +++A ++  E      +
Sbjct: 368 GLFENAKVDEAISIWE-LLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGD 426

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
            + F  +S+I    +  R D+V   L+++ + G  P+   C  ++N   +  K E
Sbjct: 427 LDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLE 481



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 129/259 (49%), Gaps = 1/259 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           +  + V+ YN+ ++   +   +D+A  +++ + ++    D++T+  L+     N   NKA
Sbjct: 354 EGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKA 413

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           +   E   +   D D   YSSMI+   R G ++   G+ D+      + +P+  + +I  
Sbjct: 414 LSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVING 473

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +  A   +  L  +  M + G  P ++TYN L++ + +A+R  +   + KEM   G  PN
Sbjct: 474 FVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPN 533

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY+ L+    + +  +  L+++ +  EKG +  V ++N ++      G  ++A +++ 
Sbjct: 534 MITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYS 593

Query: 400 DMKSSENCQPDSWTFSSMI 418
           +MK  + C P+  T ++++
Sbjct: 594 EMKQRK-CVPNLVTHNTLM 611



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 142/312 (45%), Gaps = 44/312 (14%)

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPS-FGCDPDALTYSSMIDAYGRAGNVEMAFG 256
           P++V  + + + A+ N++P++A++ F+RM   FGC P   +Y+S+++A            
Sbjct: 77  PEDVALTVIKAYAK-NSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNAL----------- 124

Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
                 + KW                    D   + +   + +G+ PN+ TYN L+    
Sbjct: 125 ----IESNKW--------------------DEAESFFLYFETMGLSPNLQTYNILIKISC 160

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           R K+  + K +   M + G SP+  +Y +L+ +  +  Y  D L ++ EM E+G+   V 
Sbjct: 161 RKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVA 220

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFN 435
            YN L+      G    A EI+E +    +  P+  +++ MI  +C C GK  E+  +++
Sbjct: 221 CYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKC-GKFDESFEIWH 279

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
            M +     +L+  ++LI     +   D   R    + E G++PD      +LN   +  
Sbjct: 280 RMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRA- 338

Query: 496 KEELGKLVECVE 507
               G++ EC+E
Sbjct: 339 ----GRIEECLE 346



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 153/348 (43%), Gaps = 37/348 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YNV +    KC   D++  ++  M       D  T+STLI     +   + A   ++ M 
Sbjct: 258 YNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMA 317

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVE----------------------MAFGLYDRARNEK 265
             G  PD + Y++M++ Y RAG +E                      +  GL++ A+ ++
Sbjct: 318 ENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDE 377

Query: 266 ----WRIDPN--------AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
               W + P          +  L+      G  +  L++ EE +      +   Y+++++
Sbjct: 378 AISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMIN 437

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
            + R  R  +V  +  +MT +G  PN +   +++  + RA   ED L  +  M  KG   
Sbjct: 438 GLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFP 497

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEA 432
           +V  YNTL+   +      EA+ + ++M   +  +P+  T+S ++    C+GK +  A  
Sbjct: 498 TVVTYNTLINGLSKAERFSEAYALVKEM-LHKGWKPNMITYSLLMN-GLCQGKKLDMALN 555

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           ++ + LE GF+P++ +   +I     + + +D ++  + + +    P+
Sbjct: 556 LWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPN 603



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 83/171 (48%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +  F +   L+ A R F +M+ +G  P  VT++TLI+        ++A    + M  
Sbjct: 468 NAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLH 527

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  P+ +TYS +++   +   ++MA  L+ +A  + ++ D    + +I    ++G  + 
Sbjct: 528 KGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVED 587

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
            L +Y EMK     PN++T+N L++   + +   +   I+  +  +  S N
Sbjct: 588 ALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQSWSSSN 638



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 84/180 (46%), Gaps = 4/180 (2%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPD-NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           CR+  LD+   + D M   G KP+ +V  + +    R + L + A+ +F  M S GC P 
Sbjct: 440 CREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLED-ALRFFGNMVSKGCFPT 498

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
            +TY+++I+   +A     A+ L     ++ W+ +   +S L+         D  LN++ 
Sbjct: 499 VVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWC 558

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           +    G KP++  +N ++  +  + +      +Y EM      PN  T+ +L+  + + R
Sbjct: 559 QALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVR 618


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 164/332 (49%), Gaps = 1/332 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +  F +  ++D AERL   MLD G+KP+ VTF+++++          A + F+
Sbjct: 185 VVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFD 244

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  PD ++Y++++  Y +AG    A  ++     +    D   F++LI +   AG
Sbjct: 245 EMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAG 304

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N +  + +  +M+  G++ N +T+  L+D   +           + M    + P+   Y 
Sbjct: 305 NLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYN 364

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+  Y      ++   +  EM+ KG++  V  Y+T+++       T  AFE+ + M   
Sbjct: 365 ALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLE- 423

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +   PD+ T+SS+I +     ++S+A  +F  M++ G +P+ F  TSLI  + K    + 
Sbjct: 424 KGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVER 483

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
            +   +++ + G+ PD      L+N ++++ +
Sbjct: 484 ALSLHDKMVKAGVLPDVVTYSVLINGLSKSAR 515



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 154/308 (50%), Gaps = 1/308 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ +N  +    K   ++ A ++FD+M+  G+ PD V+++TL+         ++A+  F 
Sbjct: 220 LVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFA 279

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  PD +T++S+I    +AGN+E A  L  + R    +++   F+ LI  +   G
Sbjct: 280 EMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKG 339

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  L     M+   +KP+++ YN L++      R  + + +  EM   GL P+  TY+
Sbjct: 340 FLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYS 399

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +++ AY +         + ++M EKG+      Y++L+ +  +     +A  +F++M   
Sbjct: 400 TIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNM-IK 458

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              QPD +T++S+I      G V  A ++ ++M++AG  P++   + LI    K+ R  +
Sbjct: 459 LGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAME 518

Query: 465 VVRALNRL 472
             + L +L
Sbjct: 519 AQQLLFKL 526



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 142/309 (45%), Gaps = 26/309 (8%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +  +     +D+A  L  +M  +G+KPD VT+ST+IS    N   + A E  +
Sbjct: 360 VVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQ 419

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M   G  PDA+TYSS+I        +  A  L+        + D   +++LI  +   G
Sbjct: 420 QMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEG 479

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N +  L+++++M   GV P+++TY+ L++ + ++ R  + + +  ++      P    Y 
Sbjct: 480 NVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYD 539

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+    +A   +  L++ +    KG+                    +EA ++++ M   
Sbjct: 540 ALMHCCRKAEL-KSVLALLKGFCMKGLM-------------------NEADKVYQSML-D 578

Query: 405 ENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQ 460
            N   D   +S +I    CR G V +A +   +ML+ GF PN     SLI+     G   
Sbjct: 579 RNWNLDGSVYSVLIH-GHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVV 637

Query: 461 RTDDVVRAL 469
             D V++ L
Sbjct: 638 EADQVIQQL 646



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 88/201 (43%), Gaps = 15/201 (7%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I Y+  ++V  + + L  A  LF +M+  G++PD  T+++LI          +A+   
Sbjct: 429 DAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLH 488

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNV----EMAFGLYDR---ARNEKW--------RI 268
           ++M   G  PD +TYS +I+   ++       ++ F LY       N K+        + 
Sbjct: 489 DKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKA 548

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           +  +   L+K +   G  +    VY+ M       +   Y+ L+    RA    +  + +
Sbjct: 549 ELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFH 608

Query: 329 KEMTDNGLSPNWNTYASLLRA 349
           K+M   G +PN  +  SL+R 
Sbjct: 609 KQMLQRGFAPNSTSTISLIRG 629


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 165/340 (48%), Gaps = 7/340 (2%)

Query: 142 MTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNV 201
           M  PD   ++L     + +   ++  + + +K F  C  L  A   F  +   G+ PD V
Sbjct: 94  MERPDLV-ISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVV 152

Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
           TF+TL+    +++  ++A++ F ++    C PD LT++++++   R G V  A  L DR 
Sbjct: 153 TFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCREGRVVEAVALLDRM 208

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKR 320
                + D   + T +      G+    LN+  +M+ I  +KPN++ Y+ ++D + +  R
Sbjct: 209 VENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGR 268

Query: 321 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 380
                 ++ EM D G+ PN  TY  ++  +  +        + +EM E+ +  +V  YN 
Sbjct: 269 HSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNA 328

Query: 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
           L+      G   EA E++++M       P++ T++SMI     + ++  AE MF  M   
Sbjct: 329 LINAFVKEGKFFEAAELYDEML-PRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATK 387

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           G  P++F  T+LI  Y  A+R DD +  L+ +P  G+  +
Sbjct: 388 GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVAN 427



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 145/321 (45%), Gaps = 25/321 (7%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S  V+ YN  +  F K     +A  L+D+ML RG+ P+ +T++++I      +  + A
Sbjct: 318 KISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAA 377

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
            + F  M + GC PD  T++++ID Y  A  ++    L           +   ++TLI  
Sbjct: 378 EDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHG 437

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +   G+ +  L++ ++M + GV P+++T N LLD                 + DNG    
Sbjct: 438 FCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDG----------------LCDNG---K 478

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
                 + +A  +++   D    +      G++  V  YN L+    + G   EA E++E
Sbjct: 479 LKDALEMFKAMQKSKMDLDASHPF-----NGVEPDVLTYNILICGLINEGKFLEAEELYE 533

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +M       PD+ T+SSMI     + ++ EA  MF  M    F PN+    +LI  Y KA
Sbjct: 534 EM-PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKA 592

Query: 460 QRTDDVVRALNRLPELGITPD 480
            R DD +     +   GI  D
Sbjct: 593 GRVDDGLELFCEMGRRGIVAD 613



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 157/351 (44%), Gaps = 10/351 (2%)

Query: 150 LALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
            AL+ F    KL    +V+ +   +     C D   +E L  D+  +  +PD +TF+TL+
Sbjct: 134 FALSTFGKLTKLGLHPDVVTFTTLLHGL--CLDHRVSEAL--DLFHQICRPDVLTFTTLM 189

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +         +AV   +RM   G  PD +TY + +D   + G+   A  L  R   E   
Sbjct: 190 NGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLL-RKMEEISH 248

Query: 268 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I PN   +S +I      G      N++ EM+  G+ PN++TYN ++     + R    +
Sbjct: 249 IKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQ 308

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM +  +SPN  TY +L+ A+ +     +   +Y EM  +G+  +   YN+++   
Sbjct: 309 RLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGF 368

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
                 D A ++F  M +++ C PD +TF+++I       ++ +   + +EM   G   N
Sbjct: 369 CKQDRLDAAEDMFYLM-ATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVAN 427

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
                +LI  +      +  +    ++   G+ PD   C  LL+ +    K
Sbjct: 428 TVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGK 478



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 142/301 (47%), Gaps = 12/301 (3%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AA  + Y       S +V  +   +  +   + +D    L  +M  RG+  + VT++TLI
Sbjct: 376 AAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLI 435

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
               +    N A++  ++M S G  PD +T ++++D     G ++ A  ++   +  K  
Sbjct: 436 HGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMD 495

Query: 268 ID---------PNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           +D         P+  +  I + G    G F     +YEEM   G+ P+ ITY++++D + 
Sbjct: 496 LDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLC 555

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +  R  +   ++  M     SPN  T+ +L+  Y +A   +D L ++ EM  +G+     
Sbjct: 556 KQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAI 615

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
           +Y TL+     VG  + A +IF++M SS    PD+ T  +M+T    + ++  A AM  +
Sbjct: 616 IYITLIYGFRKVGNINGALDIFQEMISS-GVYPDTITIRNMLTGFWSKEELERAVAMLED 674

Query: 437 M 437
           +
Sbjct: 675 L 675



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 132/298 (44%), Gaps = 16/298 (5%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           +KP+ V +S +I     +   + +   F  M   G  P+ +TY+ MI  +  +G    A 
Sbjct: 249 IKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQ 308

Query: 256 GLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
            L       K  I PN   ++ LI  +   G F     +Y+EM   G+ PN ITYN+++D
Sbjct: 309 RLLQEMLERK--ISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMID 366

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
              +  R    + ++  M   G SP+  T+ +L+  Y  A+  +D + +  EM  +G+  
Sbjct: 367 GFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVA 426

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           +   YNTL+     VG  + A ++ + M SS  C PD  T ++++      GK+ +A  M
Sbjct: 427 NTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVC-PDIVTCNTLLDGLCDNGKLKDALEM 485

Query: 434 FNEMLEA-----------GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           F  M ++           G EP++     LI       +  +       +P  GI PD
Sbjct: 486 FKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPD 543



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/419 (19%), Positives = 172/419 (41%), Gaps = 21/419 (5%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A++ F  M      P  + ++ ++ A  R    ++   LY +   ++ R D  +F+ LIK
Sbjct: 65  AIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIK 124

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            + +       L+ + ++  +G+ P+++T+  LL  +    R  +   ++ ++      P
Sbjct: 125 CFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQIC----RP 180

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  T+ +L+    R     + +++   M E G+Q     Y T +     +G T  A  + 
Sbjct: 181 DVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLL 240

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
             M+   + +P+   +S++I      G+ S++  +F EM + G  PN+     +I  +  
Sbjct: 241 RKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCI 300

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL--GYV 516
           + R     R L  + E  I+P+      L+N   +      GK  E  E  +  L  G +
Sbjct: 301 SGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKE-----GKFFEAAELYDEMLPRGII 355

Query: 517 VKLLLEEQDIEGDFKKE----ATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 572
              +     I+G  K++    A ++F  ++         C  D+     L++  C    +
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATK------GCSPDVFTFTTLIDGYCGAKRI 409

Query: 573 GLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINT 631
              +E+  ++  R     ++   +L  G  L        DLS+ + S    P ++  NT
Sbjct: 410 DDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNT 468


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 150/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + ++V  +    ++A ++   M D G KPD VT + LI         + A + F +M 
Sbjct: 254 YTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMK 313

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           +    PD +TY +++D  G  G+      +++  + + +  +  A++ ++      G  D
Sbjct: 314 ASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVD 373

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              +V+++MK  G++P   +YN+L+    +A R      ++  M  +G +PN  TY   +
Sbjct: 374 EASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFI 433

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YG++      +  Y  MK KG+   V   N +L   A  G    A  +F ++KS   C
Sbjct: 434 NYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVC 493

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD+ T++ MI  CS      EA  +F+EM+E    P++  + SLI    KA R ++  +
Sbjct: 494 -PDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWK 552

Query: 468 ALNRLPELGITPDD 481
             + L E+ + P D
Sbjct: 553 IFHELKEMNLDPTD 566



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 148/300 (49%), Gaps = 1/300 (0%)

Query: 181  LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
            +D AE LF +M   G  PD  T++ ++     +      ++  + M   G +   +TY++
Sbjct: 792  IDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNT 851

Query: 241  MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
            +I    ++  +  A  LY +  +E +   P  +  L+      G  +   ++++EM   G
Sbjct: 852  IISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYG 911

Query: 301  VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
             KPN   YN LL+    A    +V  +++ M D G++P+  +Y  L+ A   A    D+L
Sbjct: 912  CKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSL 971

Query: 361  SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            S +R++ E G++  +  YN L+      G  +EA  +F DM+ S    P+ +T++S+I  
Sbjct: 972  SYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKS-GIAPNLYTYNSLILY 1030

Query: 421  CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
                GK +EA  M+ E+L+ G++PN+F   +LI  Y  +  TD+   +  ++   G  P+
Sbjct: 1031 LGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPN 1090



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 153/328 (46%), Gaps = 18/328 (5%)

Query: 99   YNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNK 158
            YN+L+    D +     E  +FS ++ LG D  E    +IL+ M              + 
Sbjct: 779  YNALICGLVDENLIDVAEG-LFSEMKRLGCDPDEFTYNLILDAMGKS-------MRIEDM 830

Query: 159  LKASKEV---------ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC 209
            LK  KE+         + YN  +    K + L +A  L+  ++  G  P   T+  L+  
Sbjct: 831  LKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDG 890

Query: 210  ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
               +     A + F+ M  +GC P+   Y+ +++ Y  AGN E    L+    ++    D
Sbjct: 891  LLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPD 950

Query: 270  PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
              +++ LI    TAG  +  L+ + ++  +G++P++ITYN L+  +GR+ R  +  +++ 
Sbjct: 951  IKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFN 1010

Query: 330  EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
            +M  +G++PN  TY SL+   G+     +   +Y E+ + G + +V  YN L+   +  G
Sbjct: 1011 DMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSG 1070

Query: 390  YTDEAFEIFEDMKSSENCQPDSWTFSSM 417
             TD AF  +  M     C P+S T+  +
Sbjct: 1071 STDNAFASYGQMIVG-GCPPNSSTYMQL 1097



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 148/328 (45%), Gaps = 7/328 (2%)

Query: 157 NKLKA---SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
           N +KA   +  V+ Y   +    +   +D+A  +FD M  +G++P   ++++LIS     
Sbjct: 345 NAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKA 404

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           +  N A+E F  M   G  P+  TY   I+ YG++G    A   Y+  +++    D  A 
Sbjct: 405 DRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAG 464

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           + ++     +G       V+ E+K+IGV P+ ITY  ++    +A    +   ++ EM +
Sbjct: 465 NAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIE 524

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
               P+     SL+    +A  G +   ++ E+KE  +  +   YNTLLA     G   E
Sbjct: 525 TRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKE 584

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
              + E+M S  N  P +    + +  C C+ G+V+ A  M   M   G  P+L    + 
Sbjct: 585 VMHLLEEMNS--NSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTA 642

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPD 480
           +    K  R  +  R   ++ ++ + PD
Sbjct: 643 LHGLVKEDRLTEAFRIFCQMKKV-LAPD 669



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 138/290 (47%), Gaps = 2/290 (0%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           M + G+  ++ T++ LI     +    +A+E ++ M + G  P   TYS ++ A+G+  +
Sbjct: 173 MKEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKR-D 231

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
           VE    L     +   + +  +++  I++ G AG F+    + ++M+  G KP+++T   
Sbjct: 232 VETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTV 291

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L+  +  A R    K ++ +M  +   P+  TY +LL   G        + ++  MK  G
Sbjct: 292 LIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADG 351

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
              +V  Y  ++     VG  DEA ++F+ MK  +  +P  ++++S+I+      +++ A
Sbjct: 352 YNDNVVAYTAVVDALCQVGRVDEASDVFDQMK-QKGIEPQQYSYNSLISGFLKADRLNHA 410

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             +FN M   G  PN +     I  YGK+  +   ++    +   GI PD
Sbjct: 411 LELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPD 460



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 139/323 (43%), Gaps = 37/323 (11%)

Query: 183  KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
            +A  L       GV     +++ LI      NL + A   F  M   GCDPD  TY+ ++
Sbjct: 759  EAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLIL 818

Query: 243  DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            DA G++  +E                                     L V +EM   G +
Sbjct: 819  DAMGKSMRIE-----------------------------------DMLKVQKEMHCKGYE 843

Query: 303  PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
               +TYN ++  + ++K  ++   +Y ++   G SP   TY  LL    +    ED   +
Sbjct: 844  STYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDL 903

Query: 363  YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
            + EM + G + +  +YN LL      G T++  E+F++M   +   PD  +++ +I    
Sbjct: 904  FDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNM-VDQGINPDIKSYTVLIGALC 962

Query: 423  CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-D 481
              G+++++ + F ++ E G EP+L     LI   G++ R ++ V   N + + GI P+  
Sbjct: 963  TAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLY 1022

Query: 482  RFCGCLLNVMTQTPKEELGKLVE 504
             +   +L +  +    E GK+ E
Sbjct: 1023 TYNSLILYLGKEGKAAEAGKMYE 1045



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 125/261 (47%), Gaps = 9/261 (3%)

Query: 216 PNKAVEWFE---RMPSFGCDPDALTYS-SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
           P +A++ F+   + P      ++  Y   ++ A+GR  ++   F L  R   +  + +  
Sbjct: 92  PAEALQLFKSVAQQPRIVHTTESCNYMLELMRAHGRVRDMAQVFDLMQR---QIVKANVG 148

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
            F T+ +  G  G           MK  G+  N  TYN L+  + ++    +   +YK M
Sbjct: 149 TFLTIFRSLGMEGGLRSAPVALPMMKEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVM 208

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
             +G+ P+  TY+ L+ A+G+ R  E  + + REM++ G++ +V  Y   + +    G  
Sbjct: 209 ATDGIVPSVRTYSVLMLAFGK-RDVETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRF 267

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           +EA++I + M+  E C+PD  T + +I I    G+VS+A+ +F +M  +  +P+     +
Sbjct: 268 EEAYKILQKME-DEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYIT 326

Query: 452 LIQCYGKAQRTDDVVRALNRL 472
           L+   G    +  V+   N +
Sbjct: 327 LLDKCGDNGDSRSVIEIWNAM 347


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 146/305 (47%), Gaps = 5/305 (1%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           DR   PD  +F+ +I          KA+E  ERM  FGC PD +T++ ++D   R   V 
Sbjct: 244 DRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVS 303

Query: 253 MAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
               +  R + +   + PN   F+++I  Y  AG  +  + VY +M A G+ PN +TYN 
Sbjct: 304 RGHEVLRRLQRDGVCM-PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNV 362

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L++  G+         +Y++MT     P+  T++SL+  Y R    +D L ++ +M +  
Sbjct: 363 LINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHR 422

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSE 429
           +Q +V  ++ ++        +DEA  +  ++    +  P ++ ++ +I  +C C GKV E
Sbjct: 423 IQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKC-GKVDE 481

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           A  +   M E G  P+ +  T LI  Y    R  + +   + + E G +PD     C ++
Sbjct: 482 ANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFIS 541

Query: 490 VMTQT 494
            + + 
Sbjct: 542 CLLKA 546



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 159/322 (49%), Gaps = 4/322 (1%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D  AL   +  +++  S +V  +NV +K   +   + KA  L + M + G  PD VT + 
Sbjct: 233 DVVALFERWIQDRVY-SPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNI 291

Query: 206 LISCARMNNLPNKAVEWFERMPSFG-CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
           L+      N  ++  E   R+   G C P+ +T++S+I  Y +AG +E A  +Y+     
Sbjct: 292 LVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 351

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
               +   ++ LI  YG  G+    + VY++M  +   P+++T+++L+D   R  +    
Sbjct: 352 GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDA 411

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLA 383
             I+ +M  + + PN  T++ ++ +  +    ++ + +  E+  +  +     +YN ++ 
Sbjct: 412 LRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVID 471

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
           +    G  DEA  I + M+  + C+PD +T++ +I     + ++SEA   F+EM+EAG  
Sbjct: 472 VLCKCGKVDEANLIRKGMEE-KGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCS 530

Query: 444 PNLFVLTSLIQCYGKAQRTDDV 465
           P+   +   I C  KA   ++V
Sbjct: 531 PDSITVNCFISCLLKAGMPNEV 552



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 149/309 (48%), Gaps = 11/309 (3%)

Query: 178 CRDLDKAE--RLFDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           CR   +A+  +LFD M    G  PD    S L+S     NL + +     +   FGC  +
Sbjct: 155 CRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVE 214

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDR-ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           A  Y+ ++ +    G V     L++R  ++  +  D  +F+ +IK     G     L + 
Sbjct: 215 AYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELV 274

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGR 352
           E M   G  P+ +T+N L+D + R     +   + + +  +G+  PN  T+ S++  Y +
Sbjct: 275 ERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCK 334

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
           A   ED ++VY +M   G+  +   YN L+     VG    A E+++ M +   C PD  
Sbjct: 335 AGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQM-TRLRCPPDVV 393

Query: 413 TFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
           TFSS+I   C C G++ +A  ++++M +   +PN++  + +I    K  R+D+ +  LN 
Sbjct: 394 TFSSLIDGYCRC-GQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLN- 451

Query: 472 LPELGITPD 480
             EL + PD
Sbjct: 452 --ELNLRPD 458



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 101/264 (38%), Gaps = 10/264 (3%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLN 291
           P A +   +I    R+G    A  L+D+      +  D    S L+     A   D    
Sbjct: 142 PSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASAT 201

Query: 292 VYEEMKAIGVKPNMITYNNLLDTM-GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
           +  +    G +     YN L+ ++ GR +    V    + + D   SP+  ++  +++  
Sbjct: 202 LLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGV 261

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
            R    +  L +   M E G       +N L+             E+   ++    C P+
Sbjct: 262 CRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPN 321

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
             TF+S+I+     GK+ +A A++N+M+ +G  PN      LI  YGK       V    
Sbjct: 322 VVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQ 381

Query: 471 RLPELGITPD--------DRFCGC 486
           ++  L   PD        D +C C
Sbjct: 382 QMTRLRCPPDVVTFSSLIDGYCRC 405



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 5/175 (2%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           +L+   +V+ ++  +  + +C  LD A R++ DM    ++P+  TFS +I      N  +
Sbjct: 385 RLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSD 444

Query: 218 KAVEWFERM---PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
           +A+     +   P     P A  Y+ +ID   + G V+ A  +      +  R D   ++
Sbjct: 445 EAIGLLNELNLRPDIA--PQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYT 502

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
            LI  Y         +  + EM   G  P+ IT N  +  + +A  P +V  + +
Sbjct: 503 ILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHVMR 557


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 161/325 (49%), Gaps = 4/325 (1%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           +LN +   +    A+  F   L+     +V  +N+ ++   +  ++DKA   F +M + G
Sbjct: 185 LLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFG 244

Query: 196 VKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
             PD V+++TLI+   R+N +        E M   G  PD +TY+S+I  Y + G+++ A
Sbjct: 245 CFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAA 304

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             L+D   +   + +   F+ LI  +G  GN    + +YE+M  +G  P+++T+ +L+D 
Sbjct: 305 SELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDG 364

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
             R     Q   +++EM    LSPN  TYA L+ A  +     +  +  R +K   +   
Sbjct: 365 YCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPK 424

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
             +YN ++      G  DEA  I  +M+  + C+PD  TF+ +I     +G++ EA + F
Sbjct: 425 PFIYNPVIDGFCKAGKVDEANFIVAEMQEKK-CRPDKITFTILIIGNCMKGRMVEAISTF 483

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKA 459
            +M+E    P+   + SLI C  KA
Sbjct: 484 YKMIEINCVPDEITINSLISCLLKA 508



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 136/314 (43%), Gaps = 4/314 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERM 226
           Y++ M+   K    D A+ +FD M   G+ PD+     L+S  ARM  L + A  +   +
Sbjct: 112 YDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKL-DSAKNFLNEV 170

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
             +G       Y+++++   +   V+ A  L+       +  D  +F+ LI+     G  
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE-MTDNGLSPNWNTYAS 345
           D     ++ M   G  P++++YN L++   R     +   + KE M   G+SP+  TY S
Sbjct: 231 DKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTS 290

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++  Y +    +    ++ EM   G++ +   +N L+     VG    A  ++E M    
Sbjct: 291 IISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLL- 349

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
            C PD  TF+S+I      G+V++   ++ EM      PN++    LI    K  R  + 
Sbjct: 350 GCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREA 409

Query: 466 VRALNRLPELGITP 479
              L  L    + P
Sbjct: 410 RNFLRHLKSSEVVP 423



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 104/244 (42%)

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           TY  ++    + G  + A  ++D  R++    D +    L+  Y   G  D   N   E+
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEV 170

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
              G+K +   YNNLL+ + +     +   +++E  +    P+  ++  L+R   R    
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           +     ++ M   G    +  YNTL+     V    +  ++ ++    +   PD  T++S
Sbjct: 231 DKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTS 290

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I+     G +  A  +F+EM+ +G +PN F    LI  +GK       +    ++  LG
Sbjct: 291 IISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLG 350

Query: 477 ITPD 480
             PD
Sbjct: 351 CLPD 354



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 92/212 (43%), Gaps = 2/212 (0%)

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
           N +  L++     G  D    V++ M++ G+ P+      L+ +  R  +    K    E
Sbjct: 110 NTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNE 169

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           +   G+  +   Y +LL    +    ++ + ++RE  E      V  +N L+     +G 
Sbjct: 170 VHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGE 229

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE-MLEAGFEPNLFVL 449
            D+AFE F++M  +  C PD  +++++I       ++S+   +  E ML  G  P++   
Sbjct: 230 IDKAFEFFQNM-GNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITY 288

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           TS+I  Y K           + +   GI P+D
Sbjct: 289 TSIISGYCKLGDMKAASELFDEMVSSGIKPND 320



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 5/165 (3%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           CR+  +++  +L+++M  R + P+  T++ LI+     N   +A  +   + S    P  
Sbjct: 366 CREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKP 425

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
             Y+ +ID + +AG V+ A  +    + +K R D   F+ LI      G     ++ + +
Sbjct: 426 FIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYK 485

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRP---WQVKTIYKEMTDNGLS 337
           M  I   P+ IT N+L+  + +A  P    Q+K    +  + GLS
Sbjct: 486 MIEINCVPDEITINSLISCLLKAGMPNEASQIKQAALQKLNLGLS 530



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 155 FTNKLKASKEV---ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
           F   LK+S+ V    +YN  +  F K   +D+A  +  +M ++  +PD +TF+ LI    
Sbjct: 412 FLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNC 471

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
           M     +A+  F +M    C PD +T +S+I    +AG
Sbjct: 472 MKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAG 509



 Score = 39.3 bits (90), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 3/155 (1%)

Query: 328 YKEMTDNGLSPN--WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
           + E +   LS N  +NTY  L+R   +    +    V+  M+  G+    ++   L++  
Sbjct: 95  FFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSY 154

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
           A +G  D A     ++      +   + +++++ +   +  V EA  +F E LE  F P+
Sbjct: 155 ARMGKLDSAKNFLNEVHCY-GIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPD 213

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           ++    LI+   +    D        +   G  PD
Sbjct: 214 VYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPD 248


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 165/324 (50%), Gaps = 3/324 (0%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           KL    +++  N  +  F     +  A  L D M++ G KPD VTF+TLI    ++N  +
Sbjct: 141 KLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKAS 200

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +AV   +RM   GC PD +TY ++++   + G+ ++A  L ++    K   +   +ST+I
Sbjct: 201 EAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVI 260

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
                  + D  LN++ EM+  GV+PN+ITY++L+  +    R      +  +M +  ++
Sbjct: 261 DSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKIN 320

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           PN  T+++L+ A+ +         +Y EM ++ +  ++  Y++L+     +    EA ++
Sbjct: 321 PNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQM 380

Query: 398 FEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
            E M   ++C P+  T++++I   C  + +V +   +F EM + G   N    T+LI  +
Sbjct: 381 LELM-IRKDCLPNVVTYNTLINGFCKAK-RVDKGMELFREMSQRGLVGNTVTYTTLIHGF 438

Query: 457 GKAQRTDDVVRALNRLPELGITPD 480
            +A+  D+      ++  +G+ P+
Sbjct: 439 FQARDCDNAQMVFKQMVSVGVHPN 462



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 147/326 (45%), Gaps = 13/326 (3%)

Query: 142 MTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNV 201
           + N  + A+AL     +     +++ Y   +    K  D D A  L + M    ++ + V
Sbjct: 195 LHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVV 254

Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA---YGRAGNVEMAFG-L 257
            +ST+I         + A+  F  M + G  P+ +TYSS+I     YGR  +       +
Sbjct: 255 IYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDM 314

Query: 258 YDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            +R      +I+PN   FS LI  +   G       +YEEM    + PN+ TY++L++  
Sbjct: 315 IER------KINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGF 368

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
               R  + K + + M      PN  TY +L+  + +A+  +  + ++REM ++G+  + 
Sbjct: 369 CMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNT 428

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y TL+         D A  +F+ M  S    P+  T++ ++      GK+++A  +F 
Sbjct: 429 VTYTTLIHGFFQARDCDNAQMVFKQM-VSVGVHPNILTYNILLDGLCKNGKLAKAMVVFE 487

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQR 461
            +  +  EP+++    +I+   KA +
Sbjct: 488 YLQRSTMEPDIYTYNIMIEGMCKAGK 513



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 151/349 (43%), Gaps = 47/349 (13%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           +LD A  LF  M      P  + FS L+S  A+MN   +  + + E+M   G   +  TY
Sbjct: 58  ELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKF-DLVISFGEKMEILGISHNLYTY 116

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           + +I+ + R   + +A  L  +     +  D    ++L+  +         + + ++M  
Sbjct: 117 NILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVE 176

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA----- 353
           +G KP+ +T+  L+  +    +  +   +   M   G  P+  TY +++    +      
Sbjct: 177 MGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDL 236

Query: 354 ------------------------------RYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
                                         R+ +D L+++ EM+ KG++ +V  Y++L++
Sbjct: 237 ALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLIS 296

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
              + G   +A  +  DM   +   P+  TFS++I     +GK+ +AE ++ EM++   +
Sbjct: 297 CLCNYGRWSDASRLLSDMIERK-INPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSID 355

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           PN+F  +SLI  +    R  +  + L    EL I  D     CL NV+T
Sbjct: 356 PNIFTYSSLINGFCMLDRLGEAKQML----ELMIRKD-----CLPNVVT 395



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   +  F + RD D A+ +F  M+  GV P+ +T++ L+     N    KA+  FE 
Sbjct: 429 VTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEY 488

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
           +     +PD  TY+ MI+   +AG  +M  G+Y
Sbjct: 489 LQRSTMEPDIYTYNIMIEGMCKAGKWKMG-GIY 520


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 159/342 (46%), Gaps = 7/342 (2%)

Query: 168 YNVTMKVFRKCR--DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           +  T  +   CR  DLD A ++F+ M   G +P+ VT+STLI+    +   N+A +    
Sbjct: 251 FTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIRE 310

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P A T +  I A    G  E A+ L+   +N+    +   ++ LI     +G 
Sbjct: 311 MILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGI 370

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               + ++  M   GV PN +TYN L++ +   +R      +   M  NG SPN  TY  
Sbjct: 371 LKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNE 430

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +++ Y      +  + V   M ++G   ++  YNT++    D G T  A  I + M+   
Sbjct: 431 MIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDG- 489

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
            C+PD W+++ +I       K+  A  +FNEM++ G  PN    T+LI  Y K ++ D  
Sbjct: 490 GCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTA 549

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQ----TPKEELGKLV 503
              L  +   G  P+ +    L++ +T+    +  EEL K++
Sbjct: 550 TSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVM 591



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 137/293 (46%), Gaps = 1/293 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  ++ YN  +K +    D  KA  + ++ML RG   + VT++T+I     +     A+ 
Sbjct: 422 SPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALR 481

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + M   GC PD  +Y+ +I  + +   +E AFGL++   ++    +   ++ LI  Y 
Sbjct: 482 ILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYC 541

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                D   ++ E MK  G +PN+ TYN L+  + +       + + K M + G+ PN  
Sbjct: 542 KDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVV 601

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +++    +       L ++ +M E+G   ++  Y++L+      G  +EA  +F ++
Sbjct: 602 TYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAEL 661

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           +      PD  T+  MI      GKV  A      M++AG +P L+    LI+
Sbjct: 662 E-RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK 713



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 145/332 (43%), Gaps = 1/332 (0%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
            A+ L +  ++       + YN  + +  + R +  A  + + M   G  P+ VT++ +I
Sbjct: 373 VAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMI 432

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
               +   P KA+     M   G   + +TY+++I  Y  +GN   A  + D  R+   +
Sbjct: 433 KGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCK 492

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D  +++ LI  +      +    ++ EM   G+ PN +TY  L+D   + ++     ++
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSL 552

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            + M  +G  PN  TY  L+    +         + + M E+G+  +V  Y  ++     
Sbjct: 553 LEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCK 612

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G T  A E+F  M   + C P+  T+SS+I      GKV EAE +F E+   G  P+  
Sbjct: 613 NGSTSLALEMFNKM-IEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEI 671

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
               +I+ Y  + + +     L R+ + G  P
Sbjct: 672 TYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQP 703



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 132/288 (45%), Gaps = 4/288 (1%)

Query: 172 MKVFRKCRDLDKAERL--FDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           + + + C   +   R   F DML + G++     +S L+       +    ++ + RM S
Sbjct: 149 IHLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLS 208

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  P+ L Y+++I+A  + GNV  A  +  +    +   D   ++++I  +    + D 
Sbjct: 209 EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDS 268

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L V+ +M   G +PN +TY+ L++ +  + R  +   + +EM  +G+ P  +T    + 
Sbjct: 269 ALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPII 328

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A       ED   ++ +MK KG + +V  Y  L++     G    A  +F  M S +   
Sbjct: 329 ALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRM-SRDGVF 387

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           P++ T++++I I     ++  A  + N M   G  PN+     +I+ Y
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGY 435



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 110/235 (46%), Gaps = 1/235 (0%)

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
           D       R+   A+S L+      G     ++ Y  M + GV+PN++ YN +++ + + 
Sbjct: 169 DMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKD 228

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
                 +TI K++ ++ +SP+  TY S++  + R    +  L V+ +M ++G + +   Y
Sbjct: 229 GNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY 288

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           +TL+    D G  +EAF++  +M       P + T +  I      G   +A  +F +M 
Sbjct: 289 STLINGLCDSGRVNEAFDLIREM-ILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMK 347

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
             G EPN++  T+LI     +      +   +R+   G+ P+      L+N++ +
Sbjct: 348 NKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVE 402


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 165/340 (48%), Gaps = 7/340 (2%)

Query: 142 MTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNV 201
           M  PD   ++L     + +   ++  + + +K F  C  L  A   F  +   G+ PD V
Sbjct: 94  MERPDLV-ISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVV 152

Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
           TF+TL+    +++  ++A++ F ++    C PD LT++++++   R G V  A  L DR 
Sbjct: 153 TFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCREGRVVEAVALLDRM 208

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKR 320
                + D   + T +      G+    LN+  +M+ I  +KPN++ Y+ ++D + +  R
Sbjct: 209 VENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGR 268

Query: 321 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 380
                 ++ EM D G+ PN  TY  ++  +  +        + +EM E+ +  +V  YN 
Sbjct: 269 HSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNA 328

Query: 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
           L+      G   EA E++++M       P++ T++SMI     + ++  AE MF  M   
Sbjct: 329 LINAFVKEGKFFEAAELYDEML-PRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATK 387

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           G  P++F  T+LI  Y  A+R DD +  L+ +P  G+  +
Sbjct: 388 GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVAN 427



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 145/321 (45%), Gaps = 25/321 (7%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S  V+ YN  +  F K     +A  L+D+ML RG+ P+ +T++++I      +  + A
Sbjct: 318 KISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAA 377

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
            + F  M + GC PD  T++++ID Y  A  ++    L           +   ++TLI  
Sbjct: 378 EDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHG 437

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +   G+ +  L++ ++M + GV P+++T N LLD                 + DNG    
Sbjct: 438 FCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDG----------------LCDNG---K 478

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
                 + +A  +++   D    +      G++  V  YN L+    + G   EA E++E
Sbjct: 479 LKDALEMFKAMQKSKMDLDASHPF-----NGVEPDVLTYNILICGLINEGKFLEAEELYE 533

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +M       PD+ T+SSMI     + ++ EA  MF  M    F PN+    +LI  Y KA
Sbjct: 534 EM-PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKA 592

Query: 460 QRTDDVVRALNRLPELGITPD 480
            R DD +     +   GI  D
Sbjct: 593 GRVDDGLELFCEMGRRGIVAD 613



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 157/351 (44%), Gaps = 10/351 (2%)

Query: 150 LALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
            AL+ F    KL    +V+ +   +     C D   +E L  D+  +  +PD +TF+TL+
Sbjct: 134 FALSTFGKLTKLGLHPDVVTFTTLLHGL--CLDHRVSEAL--DLFHQICRPDVLTFTTLM 189

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +         +AV   +RM   G  PD +TY + +D   + G+   A  L  R   E   
Sbjct: 190 NGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLL-RKMEEISH 248

Query: 268 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I PN   +S +I      G      N++ EM+  G+ PN++TYN ++     + R    +
Sbjct: 249 IKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQ 308

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM +  +SPN  TY +L+ A+ +     +   +Y EM  +G+  +   YN+++   
Sbjct: 309 RLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGF 368

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
                 D A ++F  M +++ C PD +TF+++I       ++ +   + +EM   G   N
Sbjct: 369 CKQDRLDAAEDMFYLM-ATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVAN 427

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
                +LI  +      +  +    ++   G+ PD   C  LL+ +    K
Sbjct: 428 TVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGK 478



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 146/308 (47%), Gaps = 13/308 (4%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AA  + Y       S +V  +   +  +   + +D    L  +M  RG+  + VT++TLI
Sbjct: 376 AAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLI 435

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
               +    N A++  ++M S G  PD +T ++++D     G ++ A  ++   +  K  
Sbjct: 436 HGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMD 495

Query: 268 ID---------PNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           +D         P+  +  I + G    G F     +YEEM   G+ P+ ITY++++D + 
Sbjct: 496 LDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLC 555

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +  R  +   ++  M     SPN  T+ +L+  Y +A   +D L ++ EM  +G+     
Sbjct: 556 KQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAI 615

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
           +Y TL+     VG  + A +IF++M SS    PD+ T  +M+T    + ++  A AM  +
Sbjct: 616 IYITLIYGFRKVGNINGALDIFQEMISS-GVYPDTITIRNMLTGFWSKEELERAVAMLED 674

Query: 437 M-LEAGFE 443
           + +  G++
Sbjct: 675 LQMSVGYQ 682



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 132/298 (44%), Gaps = 16/298 (5%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           +KP+ V +S +I     +   + +   F  M   G  P+ +TY+ MI  +  +G    A 
Sbjct: 249 IKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQ 308

Query: 256 GLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
            L       K  I PN   ++ LI  +   G F     +Y+EM   G+ PN ITYN+++D
Sbjct: 309 RLLQEMLERK--ISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMID 366

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
              +  R    + ++  M   G SP+  T+ +L+  Y  A+  +D + +  EM  +G+  
Sbjct: 367 GFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVA 426

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           +   YNTL+     VG  + A ++ + M SS  C PD  T ++++      GK+ +A  M
Sbjct: 427 NTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVC-PDIVTCNTLLDGLCDNGKLKDALEM 485

Query: 434 FNEMLEA-----------GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           F  M ++           G EP++     LI       +  +       +P  GI PD
Sbjct: 486 FKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPD 543



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/419 (19%), Positives = 172/419 (41%), Gaps = 21/419 (5%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A++ F  M      P  + ++ ++ A  R    ++   LY +   ++ R D  +F+ LIK
Sbjct: 65  AIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIK 124

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            + +       L+ + ++  +G+ P+++T+  LL  +    R  +   ++ ++      P
Sbjct: 125 CFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQIC----RP 180

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  T+ +L+    R     + +++   M E G+Q     Y T +     +G T  A  + 
Sbjct: 181 DVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLL 240

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
             M+   + +P+   +S++I      G+ S++  +F EM + G  PN+     +I  +  
Sbjct: 241 RKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCI 300

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL--GYV 516
           + R     R L  + E  I+P+      L+N   +      GK  E  E  +  L  G +
Sbjct: 301 SGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKE-----GKFFEAAELYDEMLPRGII 355

Query: 517 VKLLLEEQDIEGDFKKE----ATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 572
              +     I+G  K++    A ++F  ++         C  D+     L++  C    +
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATK------GCSPDVFTFTTLIDGYCGAKRI 409

Query: 573 GLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINT 631
              +E+  ++  R     ++   +L  G  L        DLS+ + S    P ++  NT
Sbjct: 410 DDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNT 468


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 185/399 (46%), Gaps = 12/399 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +    K  ++ KA  LF++ML  G++PD  T++ LI     ++   KA E   
Sbjct: 381 VVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLA 440

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA-RNEKWRIDPNAF--STLIKLYG 281
            M +    P   TYS +I     + +++ A  + D+  RN    + PN F   TLIK Y 
Sbjct: 441 EMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRN---GVKPNVFMYGTLIKAYV 497

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
               ++  + + + M A GV P++  YN L+  + RAK+  + K +  +M + G+ PN +
Sbjct: 498 QESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAH 557

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY + +  Y ++   +     +++M   G+  +  +Y  L+    DVG T EA   F+ M
Sbjct: 558 TYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCM 617

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
              +   PD   +S++I   S  GK  EA  +F + L+ G  P++F+  SLI  + K   
Sbjct: 618 -LEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD 676

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN----VMTQTPKEELGKLVECVEKSNSKLGYVV 517
            +   +  + +   GI P+      L+N      +    E      E + K  S  GY+ 
Sbjct: 677 IEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIY 736

Query: 518 KLLLEEQDIEGDFKKEATELFNSISKDVKK-AYCNCLID 555
            +L++    EG+ +K  +    +  K V   +  N LID
Sbjct: 737 CILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLID 775



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 186/416 (44%), Gaps = 49/416 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +    +   +D+A  +   M+++G+ PD  T++ L+          +A   FE MP
Sbjct: 279 YNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMP 338

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S G +P+  TY+++ID + + GN+E A  + D       +++   ++ +I     AG   
Sbjct: 339 SSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMA 398

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDT------MGRA-------------KRPW------ 322
             ++++ EM   G++P+  TYN L+D       M +A               P+      
Sbjct: 399 KAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLI 458

Query: 323 ----------QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                     +   +  +M  NG+ PN   Y +L++AY +    E  + + + M   G+ 
Sbjct: 459 SGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVL 518

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
             +  YN L+         +EA  +  DM   +  +P++ T+ + I + S  G++  AE 
Sbjct: 519 PDLFCYNCLIIGLCRAKKVEEAKMLLVDM-GEKGIKPNAHTYGAFINLYSKSGEIQVAER 577

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            F +ML +G  PN  + T LI+ +     T + +     + E G+ PD R    +++ ++
Sbjct: 578 YFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLS 637

Query: 493 QT--PKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-----EGDFKKEATELFNSI 541
           +    KE +G  ++ +     K G V  + L    I     EGD +K A++L++ +
Sbjct: 638 KNGKTKEAMGVFLKFL-----KTGVVPDVFLYNSLISGFCKEGDIEK-ASQLYDEM 687



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 166/356 (46%), Gaps = 13/356 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFER 225
           Y   + ++ K  ++  AER F DML  G+ P+NV ++ LI   C   N +  +A+  F+ 
Sbjct: 559 YGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTV--EALSTFKC 616

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  PD   YS++I +  + G  + A G++ +        D   +++LI  +   G+
Sbjct: 617 MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD 676

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP--WQVKTIYKEMTDNGLSPNWNTY 343
            +    +Y+EM   G+ PN++ YN L++  G  K     +   ++ EM   G+SP+   Y
Sbjct: 677 IEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIY 736

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             L+   G+    E  LS++ E ++K +  S++ +N+L+      G   EA E+F+DM  
Sbjct: 737 CILIDGCGKEGNLEKALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVIEARELFDDM-V 794

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +   P+  T++ +I        + EAE +F +M      PN    TSL+  Y +     
Sbjct: 795 DKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRF 854

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKL 519
            ++     +   GI  D    G    VM     +E GK +E ++  N  L   +KL
Sbjct: 855 KMISLFKDMEARGIACDAIAYG----VMASAYCKE-GKSLEALKLLNKSLVEGIKL 905



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 168/347 (48%), Gaps = 8/347 (2%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           I+++++       A+  F   LK     +V LYN  +  F K  D++KA +L+D+ML  G
Sbjct: 632 IIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNG 691

Query: 196 VKPDNVTFSTLIS---CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           + P+ V ++TLI+     +  NL  +A + F+ M S G  PD   Y  +ID  G+ GN+E
Sbjct: 692 INPNIVVYNTLINDYGYCKSGNL-TEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLE 750

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  L+  A+ +K     +AF++LI  +   G       ++++M    + PN++TY  L+
Sbjct: 751 KALSLFHEAQ-QKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILI 809

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           D  G+A+   + + ++ +M    + PN  TY SLL +Y +       +S++++M+ +G+ 
Sbjct: 810 DAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIA 869

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
                Y  + +     G + EA ++  +    E  + +   F ++I       ++S    
Sbjct: 870 CDAIAYGVMASAYCKEGKSLEALKLL-NKSLVEGIKLEDDVFDALIFHLCKEKQISTVLE 928

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           + +EM +     +     +L+  + K+   D+  + L  +  LG  P
Sbjct: 929 LLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVP 975



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 162/375 (43%), Gaps = 43/375 (11%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           ++++ +  FR    L++A  +F   +  G  P  +  + L+      N+     + +  M
Sbjct: 174 VFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSM 233

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAG 284
                 PD  TY+++I A+ + G+V     +      E     PN F+    I      G
Sbjct: 234 VEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE---CKPNLFTYNAFIGGLCQTG 290

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  L V + M   G+ P+  TY  L+D   + KR  + K I++ M  +GL+PN  TY 
Sbjct: 291 AVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYT 350

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+  + +    E+ L +  EM  +G++L+V  YN ++   A  G   +A  +F +M  +
Sbjct: 351 ALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMA 410

Query: 405 ENCQPDSW-----------------------------------TFSSMITICSCRGKVSE 429
              +PD+W                                   T+S +I+       + +
Sbjct: 411 -GIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQK 469

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC-GCLL 488
           A  + ++M+  G +PN+F+  +LI+ Y +  R +  +  L  +   G+ P D FC  CL+
Sbjct: 470 ANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLP-DLFCYNCLI 528

Query: 489 NVMTQTPKEELGKLV 503
             + +  K E  K++
Sbjct: 529 IGLCRAKKVEEAKML 543


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 161/325 (49%), Gaps = 4/325 (1%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           +LN +   +    A+  F   L+     +V  +N+ ++   +  ++DKA   F +M + G
Sbjct: 185 LLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFG 244

Query: 196 VKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
             PD V+++TLI+   R+N +        E M   G  PD +TY+S+I  Y + G+++ A
Sbjct: 245 CFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAA 304

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             L+D   +   + +   F+ LI  +G  GN    + +YE+M  +G  P+++T+ +L+D 
Sbjct: 305 SELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDG 364

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
             R     Q   +++EM    LSPN  TYA L+ A  +     +  +  R +K   +   
Sbjct: 365 YCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPK 424

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
             +YN ++      G  DEA  I  +M+  + C+PD  TF+ +I     +G++ EA + F
Sbjct: 425 PFIYNPVIDGFCKAGKVDEANFIVAEMQEKK-CRPDKITFTILIIGNCMKGRMVEAISTF 483

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKA 459
            +M+E    P+   + SLI C  KA
Sbjct: 484 YKMIEINCVPDEITINSLISCLLKA 508



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 136/314 (43%), Gaps = 4/314 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERM 226
           Y++ M+   K    D A+ +FD M   G+ PD+     L+S  ARM  L + A  +   +
Sbjct: 112 YDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKL-DSAKNFLNEV 170

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
             +G       Y+++++   +   V+ A  L+       +  D  +F+ LI+     G  
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE-MTDNGLSPNWNTYAS 345
           D     ++ M   G  P++++YN L++   R     +   + KE M   G+SP+  TY S
Sbjct: 231 DKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTS 290

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++  Y +    +    ++ EM   G++ +   +N L+     VG    A  ++E M    
Sbjct: 291 IISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLL- 349

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
            C PD  TF+S+I      G+V++   ++ EM      PN++    LI    K  R  + 
Sbjct: 350 GCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREA 409

Query: 466 VRALNRLPELGITP 479
              L  L    + P
Sbjct: 410 RNFLRHLKSSEVVP 423



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 104/244 (42%)

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           TY  ++    + G  + A  ++D  R++    D +    L+  Y   G  D   N   E+
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEV 170

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
              G+K +   YNNLL+ + +     +   +++E  +    P+  ++  L+R   R    
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           +     ++ M   G    +  YNTL+     V    +  ++ ++    +   PD  T++S
Sbjct: 231 DKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTS 290

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I+     G +  A  +F+EM+ +G +PN F    LI  +GK       +    ++  LG
Sbjct: 291 IISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLG 350

Query: 477 ITPD 480
             PD
Sbjct: 351 CLPD 354



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 92/212 (43%), Gaps = 2/212 (0%)

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
           N +  L++     G  D    V++ M++ G+ P+      L+ +  R  +    K    E
Sbjct: 110 NTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNE 169

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           +   G+  +   Y +LL    +    ++ + ++RE  E      V  +N L+     +G 
Sbjct: 170 VHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGE 229

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE-MLEAGFEPNLFVL 449
            D+AFE F++M  +  C PD  +++++I       ++S+   +  E ML  G  P++   
Sbjct: 230 IDKAFEFFQNM-GNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITY 288

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           TS+I  Y K           + +   GI P+D
Sbjct: 289 TSIISGYCKLGDMKAASELFDEMVSSGIKPND 320



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 5/165 (3%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           CR+  +++  +L+++M  R + P+  T++ LI+     N   +A  +   + S    P  
Sbjct: 366 CREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKP 425

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
             Y+ +ID + +AG V+ A  +    + +K R D   F+ LI      G     ++ + +
Sbjct: 426 FIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYK 485

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRP---WQVKTIYKEMTDNGLS 337
           M  I   P+ IT N+L+  + +A  P    Q+K    +  + GLS
Sbjct: 486 MIEINCVPDEITINSLISCLLKAGMPNEASQIKQAALQKLNLGLS 530



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 155 FTNKLKASKEV---ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
           F   LK+S+ V    +YN  +  F K   +D+A  +  +M ++  +PD +TF+ LI    
Sbjct: 412 FLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNC 471

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
           M     +A+  F +M    C PD +T +S+I    +AG
Sbjct: 472 MKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAG 509



 Score = 39.3 bits (90), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 3/155 (1%)

Query: 328 YKEMTDNGLSPN--WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
           + E +   LS N  +NTY  L+R   +    +    V+  M+  G+    ++   L++  
Sbjct: 95  FFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSY 154

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
           A +G  D A     ++      +   + +++++ +   +  V EA  +F E LE  F P+
Sbjct: 155 ARMGKLDSAKNFLNEVHCY-GIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPD 213

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           ++    LI+   +    D        +   G  PD
Sbjct: 214 VYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPD 248


>gi|410110077|gb|AFV61118.1| pentatricopeptide repeat-containing protein 123, partial
           [Coelocarpum swinglei]
          Length = 440

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +    A  L  +M   GV P+  ++S L++    N    +A+  F
Sbjct: 84  DLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNASSYSALLTMYVENKKFLEALSVF 143

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 144 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 201

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM + G+ PN  
Sbjct: 202 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSI 261

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 262 TYSTIISIWGKIGKLDRAAMLFQKLRTSGVEIDQILFQTMIXAYERAGLVAHAKRLLHEL 321

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++
Sbjct: 322 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKK 376

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 377 YANVVEVFDKMYGLGYFPDSNVIALVLN 404



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 150/330 (45%), Gaps = 36/330 (10%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW------------------------ 222
           LFD+M ++ + PD  T+STLI+      L + A+ W                        
Sbjct: 2   LFDEMREKALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 223 -----------FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
                      F R+   G  PD + Y++MI+ +G+A     A  L    R      + +
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNAS 121

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           ++S L+ +Y     F   L+V+ EM+ I    ++ T N ++D  G+     +   ++  M
Sbjct: 122 SYSALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 241

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           ++A  + ++M+ +   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  +
Sbjct: 242 EKANNLIQEMQ-NRGIEPNSITYSTIISIWGKIGKLDRAAMLFQKLRTSGVEIDQILFQT 300

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +I  Y +A       R L+ L      P D
Sbjct: 301 MIXAYERAGLVAHAKRLLHELKRPDNIPRD 330



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 1/205 (0%)

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
           GL+D  R +    D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 1   GLFDEMREKALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +     +  +I+  +  +G +P+   Y +++  +G+A+   D  S+  EM+  G+  + 
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNA 120

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
           + Y+ LL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 121 SSYSALLTMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFW 179

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQ 460
            M + G EPN+    +L++ YG A+
Sbjct: 180 GMRKMGIEPNVVSYNTLLRVYGDAE 204



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 113/236 (47%), Gaps = 4/236 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 209 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 268

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ + G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 269 IWGKIGKLDRAAMLFQKLRTSGVEIDQILFQTMIXAYERAGLVAHA----KRLLHELKRP 324

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 325 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKKYANVVEVF 384

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
            +M   G  P+ N  A +L AYG+    +    VY EM++ G   S  ++  +L++
Sbjct: 385 DKMYGLGYFPDSNVIALVLNAYGKLHEFDKANEVYMEMQDVGCVFSDEVHFQMLSL 440



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/245 (20%), Positives = 110/245 (44%), Gaps = 4/245 (1%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K+     V+ YN  ++V+       +A  LF  M  + ++ + VT+++++          
Sbjct: 183 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 242

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           KA    + M + G +P+++TYS++I  +G+ G ++ A  L+ + R     ID   F T+I
Sbjct: 243 KANNLIQEMQNRGIEPNSITYSTIISIWGKIGKLDRAAMLFQKLRTSGVEIDQILFQTMI 302

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             Y  AG       +  E+K    +P+ I  +  +  +  A R  +   ++++  D G  
Sbjct: 303 XAYERAGLVAHAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEV 358

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
            +   +  ++  + + +   + + V+ +M   G      +   +L     +   D+A E+
Sbjct: 359 KDITVFERMIHLFSKYKKYANVVEVFDKMYGLGYFPDSNVIALVLNAYGKLHEFDKANEV 418

Query: 398 FEDMK 402
           + +M+
Sbjct: 419 YMEMQ 423



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 81/167 (48%), Gaps = 1/167 (0%)

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           ++ EM +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +  
Sbjct: 2   LFDEMREKALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
            +    +A  IF  +K S    PD   +++MI +        +A ++ +EM  AG  PN 
Sbjct: 62  KLCDYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNA 120

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
              ++L+  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 SSYSALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 167



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            ++ EM+EK +      Y+TL+      G  D A    + M+  +    D   +S++I +
Sbjct: 1   GLFDEMREKALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ-DRVPGDLVLYSNLIEL 59

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
                  S+A ++F+ +  +GF P+L    ++I  +GKA+   D    ++ +   G+ P+
Sbjct: 60  SRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPN 119

Query: 481 DRFCGCLLNVMTQTPK 496
                 LL +  +  K
Sbjct: 120 ASSYSALLTMYVENKK 135


>gi|27545040|gb|AAO18446.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
 gi|108711829|gb|ABF99624.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 863

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 117/505 (23%), Positives = 223/505 (44%), Gaps = 17/505 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +  F    +L +   LF +M   G  PD   +  L+    +     +AV    +M 
Sbjct: 284 YRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQ 343

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGN 285
           + GC P A TY  ++D YGR G  +   G+ +  R  +  + P+   ++ L +++G  G 
Sbjct: 344 ADGCPPTAATYRVLLDLYGRQGRFD---GVRELFREMRTTVPPDTATYNVLFRVFGDGGF 400

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F   + ++++M    V+P++ T  N++   GR       + +   +T  G+ P    Y  
Sbjct: 401 FKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTG 460

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ A G A   E+    +  M E G   ++  YN L    A  G   EA  IF  M ++ 
Sbjct: 461 LVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNA 520

Query: 406 NCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
             Q D  +F ++I    C+G ++ +A   + EM ++ F P+   L  ++  Y  A   D+
Sbjct: 521 AIQKDKDSFDALIE-AYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDE 579

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE--KSNSKLGYVVKLLL 521
                  L  +   P       +L++  +  +  +   L+E ++  +++S    +  ++ 
Sbjct: 580 SKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASMIK 639

Query: 522 EEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVY 579
            E D + +++     L NS  +  D    + N L+D+         A ++L+  L   ++
Sbjct: 640 GEYDDDSNWQMVEYVLDNSNLEGCDYSLRFFNALLDVLWWFGQKGRAARVLDQALKYGLF 699

Query: 580 TDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYS 639
            ++   +   WS  +  +S+G +L A+ +W+N L   L+  E+ P L  +    G+ + S
Sbjct: 700 PELFRDTKLVWSADVHRMSVGGSLVAVSVWLNKLYDRLKGDEDLPQLASVVVLRGQMEKS 759

Query: 640 --DKGL--ASVFESHLKE-LNAPFH 659
              +GL  A V  S L + L++ FH
Sbjct: 760 TVTRGLPIAKVVYSFLNDTLSSSFH 784



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/360 (20%), Positives = 138/360 (38%), Gaps = 51/360 (14%)

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKW-RIDPNAFSTLIKLYGTAGN--FDGCLNVYE 294
           ++++   + R G+ + +  L+   + + W R D +  + +I + G  G    D CL V+ 
Sbjct: 101 FAAVYREFSRRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFH 160

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           ++                        P + +T               +Y SL+ AY R  
Sbjct: 161 DL------------------------PSESRTAL-------------SYTSLIAAYARNA 183

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE----IFEDMKS--SENCQ 408
             E+   +  +MK  G+  +   YNT+LA CA        F+    +F +M+   S + +
Sbjct: 184 LHEEARELLDQMKASGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVR 243

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD  T+++++   + R    ++E +   MLEAG  P+      ++  +  A     V   
Sbjct: 244 PDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAEL 303

Query: 469 LNRLPELGITPD-DRFCGCL-LNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI 526
              +   G TPD   + G +  + +     E +  L +             ++LL+    
Sbjct: 304 FAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGR 363

Query: 527 EGDFKKEATELFNSISKDV--KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQS 584
           +G F     ELF  +   V    A  N L  +  +    +   +L +  L  EV  DI +
Sbjct: 364 QGRFDG-VRELFREMRTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDT 422


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 165/329 (50%), Gaps = 5/329 (1%)

Query: 158 KLKASKEVIL----YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
           KL   ++V+     Y++ ++ +    D+++AE++F++M ++ ++ D   +S++IS +R  
Sbjct: 276 KLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRL 335

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
               +A   F+ M      P+A TY ++I    +AG +E A  L    +++   ++   F
Sbjct: 336 GNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIF 395

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           +T +  Y   G  D  L +   M+  G+  ++ TYN L + + +  R  + K I   M +
Sbjct: 396 NTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVE 455

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
            G+ PN  T+   +  Y +     +   ++R+M++KG   ++  YNTL+          +
Sbjct: 456 KGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQ 515

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A +I  +M  ++   PD +T+SS+I      G+V EA  +FNEM   G   N+   TS+I
Sbjct: 516 AHKIKSEM-INKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMI 574

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDR 482
               K  R D+  +  + + ++G+ PDDR
Sbjct: 575 SGLSKEGRADEAFKLYDEMMKIGLIPDDR 603



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 132/291 (45%), Gaps = 38/291 (13%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V +Y+  +   R+  ++ +A  LFD+M  R + P+  T+  LI           A    
Sbjct: 321 DVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILL 380

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL-------------------------- 257
             M S G D + + +++ +D Y R G ++ A  L                          
Sbjct: 381 LEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKL 440

Query: 258 --YDRAR------NEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
             YD A+       EK  + PN   F+  I++Y   GN      ++ +M+  G  PN+IT
Sbjct: 441 HRYDEAKCILNSMVEKG-VKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIIT 499

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           YN L+D   + ++  Q   I  EM + GL P+  TY+SL+         ++ L ++ EM+
Sbjct: 500 YNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMR 559

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            KG+  +V  Y ++++  +  G  DEAF+++++M       PD   F+S++
Sbjct: 560 LKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKI-GLIPDDRVFTSLV 609



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 154/336 (45%), Gaps = 8/336 (2%)

Query: 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR-ARNEKWRIDPN 271
           N L ++ +  ++ +   G   +  +   ++ A  R G V+     + R   + K+ I   
Sbjct: 158 NRLFDETIRVYDYVEEKGLVIEERSCFVLLLALKRCGEVDFCVRFFHRMVESNKFEIRVQ 217

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDT-MGRAKRPWQVKTIYK 329
           + + +I +    G  +    + +EM   G VKPN+ TYN LL+  +GR  R   V  I K
Sbjct: 218 SLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRK-GVDEILK 276

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
            M    +  +  TY+ L++ Y  +   E+   ++ EM+EK +++ V +Y+++++    +G
Sbjct: 277 LMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLG 336

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
               AF +F++M S  +  P++ T+ ++I      G++  AE +  EM   G + NL + 
Sbjct: 337 NMKRAFALFDEM-SQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIF 395

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV--ECVE 507
            + +  Y +  + D+ +R    + + GI  D      L N + +  + +  K +    VE
Sbjct: 396 NTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVE 455

Query: 508 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543
           K          + +E    EG+   EA  LF  + K
Sbjct: 456 KGVKPNVVTFTMFIEIYCKEGNL-AEAERLFRDMEK 490



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 2/205 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L     K   + +V  YN+      K    D+A+ + + M+++GVKP+ VTF+  I 
Sbjct: 411 ALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIE 470

Query: 209 C-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
              +  NL  +A   F  M   G  P+ +TY+++IDAY +   V+ A  +     N+   
Sbjct: 471 IYCKEGNLA-EAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLL 529

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   +S+LI      G  D  L ++ EM+  G+  N+ TY +++  + +  R  +   +
Sbjct: 530 PDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKL 589

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGR 352
           Y EM   GL P+   + SL+ ++ +
Sbjct: 590 YDEMMKIGLIPDDRVFTSLVGSFHK 614



 Score = 45.8 bits (107), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L R     R  ++T+ VY  ++EKG+ +       LL      G  D     F  M  S 
Sbjct: 151 LFRVCSDNRLFDETIRVYDYVEEKGLVIEERSCFVLLLALKRCGEVDFCVRFFHRMVESN 210

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EPNLFVLTSLIQCY-GKAQR-- 461
             +    + + +I +   RG+V +A+ + +EM+  G  +PN+F   +L+  Y G+  R  
Sbjct: 211 KFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKG 270

Query: 462 TDDVVRALNR 471
            D++++ + +
Sbjct: 271 VDEILKLMEK 280


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 179/388 (46%), Gaps = 44/388 (11%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           L     V+ YN  +  +     ++ A  + D M +RGV+PD+ T+ +LIS         +
Sbjct: 265 LGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEE 324

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD------------------R 260
           A    E+M   G  P A+TY+++ID Y   G++  AFG  D                   
Sbjct: 325 ASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIH 384

Query: 261 ARNEKWRID---------------PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
           A   + ++D               P++  ++ LI  Y   GN     N+++EM + G++P
Sbjct: 385 ALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQP 444

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
            ++TY +L+  + +  R      +++++   G SP+   + +L+  +      +   ++ 
Sbjct: 445 TLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALL 504

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
           +EM ++ +      YNTL+      G  +EA E+ ++MK     +PD  +++++I+  S 
Sbjct: 505 KEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMK-RRGIRPDHISYNTLISGYSK 563

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
           RG +++A  + +EML  GF P L    +LIQ   K Q+ D     L  +   GITPDD  
Sbjct: 564 RGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDST 623

Query: 484 CGCLLNVMTQTPKEELGKLVECVEKSNS 511
              L+        E +GK+ +  E S+S
Sbjct: 624 YFSLI--------EGIGKVDDSSEASDS 643



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 143/316 (45%), Gaps = 5/316 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N  + +F K    +    L+ +M    +K    TF+ +I+         KA ++   M 
Sbjct: 204 FNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSME 263

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  P+ +TY+++I  Y   G VE A  + D  +N     D   + +LI      G  +
Sbjct: 264 NLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLE 323

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI-YK-EMTDNGLSPNWNTYAS 345
               + E+MK IG+ P  +TYN L+D  G   +   VK   Y+ EM    + P  +TY  
Sbjct: 324 EASGILEKMKEIGLLPTAVTYNTLID--GYCNKGDLVKAFGYRDEMVRRAILPTVSTYNL 381

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ A       ++   + ++M + G+      YN L+      G   +AF + ++M  S+
Sbjct: 382 LIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEM-ISK 440

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             QP   T++S+I + S R ++  A+ +F +++  G  P+L +  +LI  +      D  
Sbjct: 441 GIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRA 500

Query: 466 VRALNRLPELGITPDD 481
              L  + +  I PD+
Sbjct: 501 FALLKEMDKRNIVPDE 516



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 130/325 (40%), Gaps = 40/325 (12%)

Query: 193 DRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
           DR     ++ F  LI +C  +    + A E F+ M   G  P   T+++M+  + +    
Sbjct: 159 DRLGTKSSIVFDMLIRACCELKR-GDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQT 217

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           E  + LY      K +     F+ +I +    G      +    M+ +GVKPN++TYN +
Sbjct: 218 ETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTV 277

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +       R    + +   M + G+ P+  TY SL+    +    E+   +  +MKE G+
Sbjct: 278 IHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGL 337

Query: 372 QLSVTLYNTLL----------------------AMCADV-------------GYTDEAFE 396
             +   YNTL+                      A+   V             G  DEA  
Sbjct: 338 LPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADG 397

Query: 397 IFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           + +DM  S    PDS T++ +I   C C G   +A  + +EM+  G +P L   TSLI  
Sbjct: 398 MIKDMGDS-GIVPDSITYNILINGYCRC-GNAKKAFNLHDEMISKGIQPTLVTYTSLIYV 455

Query: 456 YGKAQRTDDVVRALNRLPELGITPD 480
             K  R         ++   G +PD
Sbjct: 456 LSKRNRMKAADDLFEKIIREGASPD 480



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 4/182 (2%)

Query: 320 RPWQVKTIYKEMT---DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           R   VK ++ E+    D   + +   +  L+RA    + G+D    +  MKEKG+   + 
Sbjct: 143 RVAGVKDVFHELAITRDRLGTKSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIE 202

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            +N +L++   +  T+  + ++ +M   +  +   +TF+ MI +    GK+ +A+     
Sbjct: 203 TFNAMLSLFLKLNQTETVWVLYAEMFRLK-IKSTVYTFNIMINVLCKEGKLKKAKDFIGS 261

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           M   G +PN+    ++I  Y    R +     L+ +   G+ PD    G L++ M +  K
Sbjct: 262 MENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGK 321

Query: 497 EE 498
            E
Sbjct: 322 LE 323


>gi|242078445|ref|XP_002443991.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
 gi|241940341|gb|EES13486.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
          Length = 602

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 158/318 (49%), Gaps = 7/318 (2%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           + K  D  +AER+   M  +G +P  ++ + L+          KA   F RM + G +P 
Sbjct: 150 YGKLGDFSRAERVLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAEAVFRRMQTSGPEPS 209

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEK---WRIDPNAFSTLIKLYGTAGNFDGCLN 291
            +TY  ++ +       + A  +++   NEK   ++ D   F  +I +Y  AG++     
Sbjct: 210 PVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYAQARK 269

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           ++ +M    +  + +T+N+L+      K   +V +IY +M   G+ P+  +Y+ L++AYG
Sbjct: 270 LFAQMSERKIPLSTVTFNSLMSFETDYK---EVSSIYDQMQRAGMKPDVVSYSLLIKAYG 326

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           +AR  E+ L+V+ EM + G++ +   YN LL   A  G  DEA  +F+ M+     +PD 
Sbjct: 327 KARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVDEANTVFKAMRR-HRVEPDL 385

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            ++++M+        ++ AE  F  + + G +PN+ V  +L++ Y K    + V+R   R
Sbjct: 386 CSYTTMVLAYVNASDMNGAEKFFRRIKDDGLKPNVVVYGTLMKGYSKLNNVEKVMRVYER 445

Query: 472 LPELGITPDDRFCGCLLN 489
           +   G+ P+      +++
Sbjct: 446 MRIQGVEPNQTIYTTIMD 463



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 122/251 (48%), Gaps = 8/251 (3%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVI-----LYNVTMKVFRKCRDLDKAERLFDDM 191
           IIL ++   D    A   F + L   +        ++++ + +++K  D  +A +LF  M
Sbjct: 215 IILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYAQARKLFAQM 274

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
            +R +    VTF++L+S         +    +++M   G  PD ++YS +I AYG+A   
Sbjct: 275 SERKIPLSTVTFNSLMS---FETDYKEVSSIYDQMQRAGMKPDVVSYSLLIKAYGKARRE 331

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           E A  +++   +   R    +++ L+  +  +G  D    V++ M+   V+P++ +Y  +
Sbjct: 332 EEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVDEANTVFKAMRRHRVEPDLCSYTTM 391

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +     A      +  ++ + D+GL PN   Y +L++ Y +    E  + VY  M+ +G+
Sbjct: 392 VLAYVNASDMNGAEKFFRRIKDDGLKPNVVVYGTLMKGYSKLNNVEKVMRVYERMRIQGV 451

Query: 372 QLSVTLYNTLL 382
           + + T+Y T++
Sbjct: 452 EPNQTIYTTIM 462



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 109/232 (46%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D  +   ++D M   G+KPD V++S LI          +A+  FE M   G  P   +Y+
Sbjct: 295 DYKEVSSIYDQMQRAGMKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYN 354

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            ++DA+  +G V+ A  ++   R  +   D  +++T++  Y  A + +G    +  +K  
Sbjct: 355 ILLDAFAISGLVDEANTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMNGAEKFFRRIKDD 414

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G+KPN++ Y  L+    +     +V  +Y+ M   G+ PN   Y +++ A+GR     + 
Sbjct: 415 GLKPNVVVYGTLMKGYSKLNNVEKVMRVYERMRIQGVEPNQTIYTTIMDAHGRNSDFGNA 474

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           +  ++EM+ +G        N LL++        EA E+  +       +PD+
Sbjct: 475 VIWFKEMEARGYPPDQKAKNILLSLANTPEEQQEANELVGNGAIQLEVKPDN 526



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 95/184 (51%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y++ +K + K R  ++A  +F++MLD GV+P   +++ L+    ++ L ++A   F
Sbjct: 314 DVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVDEANTVF 373

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M     +PD  +Y++M+ AY  A ++  A   + R +++  + +   + TL+K Y   
Sbjct: 374 KAMRRHRVEPDLCSYTTMVLAYVNASDMNGAEKFFRRIKDDGLKPNVVVYGTLMKGYSKL 433

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            N +  + VYE M+  GV+PN   Y  ++D  GR          +KEM   G  P+    
Sbjct: 434 NNVEKVMRVYERMRIQGVEPNQTIYTTIMDAHGRNSDFGNAVIWFKEMEARGYPPDQKAK 493

Query: 344 ASLL 347
             LL
Sbjct: 494 NILL 497



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           W      F  L+  YG  G+F     V + M   G +P++I+   L++  GR K+  + +
Sbjct: 136 WDFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAE 195

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM---KEKGMQLSVTLYNTLL 382
            +++ M  +G  P+  TY  +L++       ++  +++ ++   K    +    +++ ++
Sbjct: 196 AVFRRMQTSGPEPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMI 255

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
            M    G   +A ++F  M  SE   P  + TF+S+++  +   +VS   +++++M  AG
Sbjct: 256 YMYKKAGDYAQARKLFAQM--SERKIPLSTVTFNSLMSFETDYKEVS---SIYDQMQRAG 310

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
            +P++   + LI+ YGKA+R ++ +     + + G+ P  +    LL+
Sbjct: 311 MKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLD 358



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 2/116 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERM 226
           Y   +  +    D++ AE+ F  + D G+KP+ V + TL+   +++NN+  K +  +ERM
Sbjct: 388 YTTMVLAYVNASDMNGAEKFFRRIKDDGLKPNVVVYGTLMKGYSKLNNV-EKVMRVYERM 446

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
              G +P+   Y++++DA+GR  +   A   +       +  D  A + L+ L  T
Sbjct: 447 RIQGVEPNQTIYTTIMDAHGRNSDFGNAVIWFKEMEARGYPPDQKAKNILLSLANT 502


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 163/333 (48%), Gaps = 4/333 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +K   KC  +D+A +    M    V PD V+++T+I+    +   + A    
Sbjct: 149 DVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRML 205

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           ++M + GC PD +TYSS+ID + + G VE A GL D       R +  A+++L+      
Sbjct: 206 DQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRL 265

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+     ++  EM+  G  P++++YN  +D + +A+R  + K ++  M + G +PN ++Y
Sbjct: 266 GHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSY 325

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+    + +  +D +++  + +EK   + + LY  LL      G  DEA  +F  +  
Sbjct: 326 SMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLD 385

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            + C+PD + ++ M+     R ++ +A  +  +MLE     N+     L+       R  
Sbjct: 386 EKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNC-CNVVTWNILVHGLCVDDRLS 444

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           D    L  + + G  PD    G L++ M +  K
Sbjct: 445 DAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGK 477



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/439 (21%), Positives = 194/439 (44%), Gaps = 19/439 (4%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           + + ++   +   L+KA +L   M + G  PD+  ++ LIS         +A ++   M 
Sbjct: 13  FAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMV 72

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C P  +TY++++D   +AG  + A  L D  R++    +   ++ +++        D
Sbjct: 73  KNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLD 132

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + EEM   G  P+++TYN+ +  + +  R  + +     M    ++P+  +Y +++
Sbjct: 133 EAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVI 189

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               ++   +    +  +M  +G    V  Y++L+      G  + A  + + M     C
Sbjct: 190 NGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKL-GC 248

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+   ++S++      G + +AE M  EM   GF P++    + I    KA+R      
Sbjct: 249 RPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKA 308

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIE 527
             +R+ E G TP+      L+  + +  K+EL   +  VE++  K   +V +LL    ++
Sbjct: 309 VFDRMVERGCTPNASSYSMLVEELCK--KKELDDAITLVEQAREKY-QIVDILLYTVLLD 365

Query: 528 GDFK----KEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQ 583
           G  K     EA  LF   SK + +  C    D+     +L++ CK  ++   L+++  + 
Sbjct: 366 GLCKGGRFDEACALF---SKVLDEKICE--PDVFFYNVMLDSHCKRRQIDKALQIHKQML 420

Query: 584 SR---SPTQWSLHLKSLSL 599
            R   +   W++ +  L +
Sbjct: 421 ERNCCNVVTWNILVHGLCV 439



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 120/290 (41%), Gaps = 39/290 (13%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           M+D+  +PD  TF+ L+     +N   KA +   RM   GC PD   Y+++I  Y +A +
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
              AF                  + ++K        + CL            P ++TY N
Sbjct: 61  FGQAFKF---------------LAEMVK--------NHCL------------PTVVTYTN 85

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           ++D + +A R      +  EM D G SPN  TY  ++      R  ++   +  EM  +G
Sbjct: 86  IVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRG 145

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
               V  YN+ +         DEA +    M  +    PD  +++++I      G +  A
Sbjct: 146 YFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVT----PDVVSYTTVINGLCKSGDLDSA 201

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             M ++M   G  P++   +SLI  + K    +  +  L+ + +LG  P+
Sbjct: 202 SRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPN 251



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 149/340 (43%), Gaps = 44/340 (12%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +    K   + KA+ +FD M++RG  P+  ++S L+         + A+   
Sbjct: 286 DVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLV 345

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYG 281
           E+        D L Y+ ++D   + G  + A  L+ +  +EK   +P+ F  + ++  + 
Sbjct: 346 EQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKI-CEPDVFFYNVMLDSHC 404

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                D  L ++++M       N++T+N L+  +    R    +T+   M D G  P++ 
Sbjct: 405 KRRQIDKALQIHKQMLERNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFV 463

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKG----------------------------MQL 373
           TY +L+ A  +       L ++ E  + G                             +L
Sbjct: 464 TYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL 523

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
            V L+N ++   A+ G  D   ++F ++  S + +P++ TF   I+     GK+ +AE++
Sbjct: 524 DVALWNAMILGYAENGSGDLGLKLFVELIES-DVEPNARTFGKEIS-----GKLVKAESL 577

Query: 434 ------FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
                 F+  ++ GF P+LFV  +LI  + K    ++  R
Sbjct: 578 GKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARR 617



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/308 (19%), Positives = 138/308 (44%), Gaps = 4/308 (1%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +YN  +  + K +D  +A +   +M+     P  VT++ ++           AV+  + M
Sbjct: 47  IYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEM 106

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              GC P+  TY+ +++       ++ A  + +      +  D   +++ IK        
Sbjct: 107 RDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRV 166

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D        M    V P++++Y  +++ + ++        +  +MT+ G +P+  TY+SL
Sbjct: 167 DEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSL 223

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  + +    E  + +   M + G + ++  YN+LL     +G+  +A ++  +M+    
Sbjct: 224 IDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEME-RRG 282

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             PD  ++++ I       +V +A+A+F+ M+E G  PN    + L++   K +  DD +
Sbjct: 283 FTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAI 342

Query: 467 RALNRLPE 474
             + +  E
Sbjct: 343 TLVEQARE 350



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 43/224 (19%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           L  AE +   M+D G  PD VT+ TL+           A+E FE     GC PD +TYS+
Sbjct: 443 LSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSA 502

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I         E A+ L+        ++D   ++ +I  Y   G+ D  L ++ E+    
Sbjct: 503 LITGLVHENMAEEAYLLF-------TKLDVALWNAMILGYAENGSGDLGLKLFVELIESD 555

Query: 301 VKPNMITYNNLLD-TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           V+PN  T+   +   + +A+   + + ++      G  P+                    
Sbjct: 556 VEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPD-------------------- 595

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
                          + + NTL+ + A  G  +EA  IF  MK 
Sbjct: 596 ---------------LFVANTLIDVFAKCGDLEEARRIFYSMKQ 624


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 173/355 (48%), Gaps = 6/355 (1%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A     YF   +  S  +  YN+ +K+  + +  DKA+ L + M ++G  PD  ++ T
Sbjct: 131 DEAESFFLYFET-MGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGT 189

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           LI+    N   + A++ F+ MP  G  PD   Y+ +ID + + G++  A  +++R     
Sbjct: 190 LINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGP 249

Query: 266 WRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
             + PN  +++ +I      G FD    ++  MK      ++ TY+ L+  +  +     
Sbjct: 250 -SVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDG 308

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
              +YKEM +NG+SP+   Y ++L  Y RA   E+ L +++ M+++G + +V  YN L+ 
Sbjct: 309 ATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIR 367

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
              +    DEA  I+E +   ++C  DS T+  ++      G +++A ++  E      +
Sbjct: 368 GLFENAKVDEAISIWE-LLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGD 426

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
            + F  +S+I    +  R D+V   L+++ + G  P+   C  ++N   +  K E
Sbjct: 427 LDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLE 481



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 152/320 (47%), Gaps = 1/320 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           +  + V+ YN+ ++   +   +D+A  +++ + ++    D++T+  L+     N   NKA
Sbjct: 354 EGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKA 413

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           +   E   +   D D   YSSMI+   R G ++   G+ D+      + +P+  + +I  
Sbjct: 414 LSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVING 473

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +  A   +  L  +  M + G  P ++TYN L++ + +A+R  +   + KEM   G  PN
Sbjct: 474 FVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPN 533

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY+ L+    + +  +  L+++ +  EKG +  V ++N ++      G  ++A +++ 
Sbjct: 534 MITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYS 593

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +MK  + C P+  T ++++           A  +++ +L+ G +P++      ++     
Sbjct: 594 EMKQRK-CVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSC 652

Query: 460 QRTDDVVRALNRLPELGITP 479
            R  D V  LN   + G+ P
Sbjct: 653 HRISDAVGFLNDAVDRGVLP 672



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 142/312 (45%), Gaps = 44/312 (14%)

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPS-FGCDPDALTYSSMIDAYGRAGNVEMAFG 256
           P++V  + + + A+ N++P++A++ F+RM   FGC P   +Y+S+++A            
Sbjct: 77  PEDVALTVIKAYAK-NSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNAL----------- 124

Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
                 + KW                    D   + +   + +G+ PN+ TYN L+    
Sbjct: 125 ----IESNKW--------------------DEAESFFLYFETMGLSPNLQTYNILIKISC 160

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           R K+  + K +   M + G SP+  +Y +L+ +  +  Y  D L ++ EM E+G+   V 
Sbjct: 161 RKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVA 220

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFN 435
            YN L+      G    A EI+E +    +  P+  +++ MI  +C C GK  E+  +++
Sbjct: 221 CYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKC-GKFDESFEIWH 279

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
            M +     +L+  ++LI     +   D   R    + E G++PD      +LN   +  
Sbjct: 280 RMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRA- 338

Query: 496 KEELGKLVECVE 507
               G++ EC+E
Sbjct: 339 ----GRIEECLE 346



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 145/331 (43%), Gaps = 2/331 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YNV +    KC   D++  ++  M       D  T+STLI     +   + A   ++ M 
Sbjct: 258 YNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMA 317

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++M++ Y RAG +E    L+     E  R    +++ LI+        D
Sbjct: 318 ENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVV-SYNILIRGLFENAKVD 376

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             ++++E +       + +TY  L+  + +     +  +I +E  +     +   Y+S++
Sbjct: 377 EAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMI 436

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               R    ++   V  +M + G + +  + N ++         ++A   F +M  S+ C
Sbjct: 437 NGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNM-VSKGC 495

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P   T++++I   S   + SEA A+  EML  G++PN+   + L+    + ++ D  + 
Sbjct: 496 FPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALN 555

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
              +  E G  PD +    +++ +  + K E
Sbjct: 556 LWCQALEKGFKPDVKMHNIIIHGLCSSGKVE 586



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 101/221 (45%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +  F +   L+ A R F +M+ +G  P  VT++TLI+        ++A    + M  
Sbjct: 468 NAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLH 527

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  P+ +TYS +++   +   ++MA  L+ +A  + ++ D    + +I    ++G  + 
Sbjct: 528 KGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVED 587

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L +Y EMK     PN++T+N L++   + +   +   I+  +   G  P+  +Y   L+
Sbjct: 588 ALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLK 647

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
                    D +    +  ++G+  +   +N L+    D G
Sbjct: 648 GLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVRAVLDNG 688



 Score = 47.8 bits (112), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 10/114 (8%)

Query: 137 IILNNMTNPDTAALALTYFT--NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           II++ + +      AL  ++   + K    ++ +N  M+ F K RD ++A +++D +L  
Sbjct: 574 IIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQY 633

Query: 195 GVKPD----NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244
           G +PD    N+T   L SC R+++    AV +       G  P A+T++ ++ A
Sbjct: 634 GPQPDIISYNITLKGLCSCHRISD----AVGFLNDAVDRGVLPTAITWNILVRA 683


>gi|115456295|ref|NP_001051748.1| Os03g0824100 [Oryza sativa Japonica Group]
 gi|113550219|dbj|BAF13662.1| Os03g0824100, partial [Oryza sativa Japonica Group]
          Length = 691

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 117/505 (23%), Positives = 223/505 (44%), Gaps = 17/505 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +  F    +L +   LF +M   G  PD   +  L+    +     +AV    +M 
Sbjct: 112 YRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQ 171

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGN 285
           + GC P A TY  ++D YGR G  +   G+ +  R  +  + P+   ++ L +++G  G 
Sbjct: 172 ADGCPPTAATYRVLLDLYGRQGRFD---GVRELFREMRTTVPPDTATYNVLFRVFGDGGF 228

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F   + ++++M    V+P++ T  N++   GR       + +   +T  G+ P    Y  
Sbjct: 229 FKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTG 288

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ A G A   E+    +  M E G   ++  YN L    A  G   EA  IF  M ++ 
Sbjct: 289 LVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNA 348

Query: 406 NCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
             Q D  +F ++I    C+G ++ +A   + EM ++ F P+   L  ++  Y  A   D+
Sbjct: 349 AIQKDKDSFDALIE-AYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDE 407

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE--KSNSKLGYVVKLLL 521
                  L  +   P       +L++  +  +  +   L+E ++  +++S    +  ++ 
Sbjct: 408 SKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASMIK 467

Query: 522 EEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVY 579
            E D + +++     L NS  +  D    + N L+D+         A ++L+  L   ++
Sbjct: 468 GEYDDDSNWQMVEYVLDNSNLEGCDYSLRFFNALLDVLWWFGQKGRAARVLDQALKYGLF 527

Query: 580 TDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYS 639
            ++   +   WS  +  +S+G +L A+ +W+N L   L+  E+ P L  +    G+ + S
Sbjct: 528 PELFRDTKLVWSADVHRMSVGGSLVAVSVWLNKLYDRLKGDEDLPQLASVVVLRGQMEKS 587

Query: 640 --DKGL--ASVFESHLKE-LNAPFH 659
              +GL  A V  S L + L++ FH
Sbjct: 588 TVTRGLPIAKVVYSFLNDTLSSSFH 612



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 116/272 (42%), Gaps = 29/272 (10%)

Query: 235 ALTYSSMIDAYGR---------------AGNV---------EMAFGLYDRARNE---KWR 267
           AL+Y+S+I AY R               A  V         +M  GL+   R++     R
Sbjct: 12  ALSYTSLIAAYARNALHEEARELLDQMKASGVAPTDPPVPFDMLLGLFAEMRHDPSPSVR 71

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   ++TL+         D    +   M   GV P+  +Y +++D    A    +V  +
Sbjct: 72  PDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAEL 131

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           + EM+  G +P+ + Y  L+ A+       + ++V R+M+  G   +   Y  LL +   
Sbjct: 132 FAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGR 191

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G  D   E+F +M+++    PD+ T++ +  +    G   E   +F +ML +  EP++ 
Sbjct: 192 QGRFDGVRELFREMRTT--VPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDID 249

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
              +++   G+    +D    L+ +   G+ P
Sbjct: 250 TCENVMVACGRGGLHEDAREVLDYITTEGMVP 281



 Score = 39.3 bits (90), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 97/249 (38%), Gaps = 18/249 (7%)

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFE 399
           +Y SL+ AY R    E+   +  +MK  G+  +     ++ LL + A++ +         
Sbjct: 14  SYTSLIAAYARNALHEEARELLDQMKASGVAPTDPPVPFDMLLGLFAEMRH--------- 64

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
               S + +PD  T+++++   + R    ++E +   MLEAG  P+      ++  +  A
Sbjct: 65  --DPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGA 122

Query: 460 QRTDDVVRALNRLPELGITPD-DRFCGCL-LNVMTQTPKEELGKLVECVEKSNSKLGYVV 517
                V      +   G TPD   + G +  + +     E +  L +             
Sbjct: 123 GNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATY 182

Query: 518 KLLLEEQDIEGDFKKEATELFNSISKDV--KKAYCNCLIDLCVNLNLLENACKLLELGLT 575
           ++LL+    +G F     ELF  +   V    A  N L  +  +    +   +L +  L 
Sbjct: 183 RVLLDLYGRQGRFDG-VRELFREMRTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLH 241

Query: 576 LEVYTDIQS 584
            EV  DI +
Sbjct: 242 SEVEPDIDT 250


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 159/342 (46%), Gaps = 7/342 (2%)

Query: 168 YNVTMKVFRKCR--DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           +  T  +   CR  DLD A ++F+ M   G +P+ VT+STLI+    +   N+A +    
Sbjct: 251 FTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIRE 310

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P A T +  I A    G  E A+ L+   +N+    +   ++ LI     +G 
Sbjct: 311 MILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGL 370

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               + ++  M   GV PN +TYN L++ +   +R      +   M  NG SPN  TY  
Sbjct: 371 LKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNE 430

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +++ Y      +  + V   M ++G   ++  YNT++    D G T  A  I + M+   
Sbjct: 431 MIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDG- 489

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
            C+PD W+++ +I       K+  A  +FNEM++ G  PN    T+LI  Y K ++ D  
Sbjct: 490 GCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTA 549

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQ----TPKEELGKLV 503
              L  +   G  P+ +    L++ +T+    +  EEL K++
Sbjct: 550 TSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVM 591



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 137/293 (46%), Gaps = 1/293 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  ++ YN  +K +    D  KA  + ++ML RG   + VT++T+I     +     A+ 
Sbjct: 422 SPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALR 481

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + M   GC PD  +Y+ +I  + +   +E AFGL++   ++    +   ++ LI  Y 
Sbjct: 482 ILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYC 541

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                D   ++ E MK  G +PN+ TYN L+  + +       + + K M + G+ PN  
Sbjct: 542 KDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVV 601

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +++    +       L ++ +M E+G   ++  Y++L+      G  +EA  +F ++
Sbjct: 602 TYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAEL 661

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           +      PD  T+  MI      GKV  A      M++AG +P L+    LI+
Sbjct: 662 E-RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK 713



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 145/332 (43%), Gaps = 1/332 (0%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
            A+ L +  ++       + YN  + +  + R +  A  + + M   G  P+ VT++ +I
Sbjct: 373 VAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMI 432

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
               +   P KA+     M   G   + +TY+++I  Y  +GN   A  + D  R+   +
Sbjct: 433 KGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCK 492

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D  +++ LI  +      +    ++ EM   G+ PN +TY  L+D   + ++     ++
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSL 552

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            + M  +G  PN  TY  L+    +         + + M E+G+  +V  Y  ++     
Sbjct: 553 LEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCK 612

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G T  A E+F  M   + C P+  T+SS+I      GKV EAE +F E+   G  P+  
Sbjct: 613 NGSTSLALEMFNKM-IEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEI 671

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
               +I+ Y  + + +     L R+ + G  P
Sbjct: 672 TYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQP 703



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 132/288 (45%), Gaps = 4/288 (1%)

Query: 172 MKVFRKCRDLDKAERL--FDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           + + + C   +   R   F DML + G++     +S L+       +    ++ + RM S
Sbjct: 149 IHLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLS 208

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  P+ L Y+++I+A  + GNV  A  +  +    +   D   ++++I  +    + D 
Sbjct: 209 EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDS 268

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L V+ +M   G +PN +TY+ L++ +  + R  +   + +EM  +G+ P  +T    + 
Sbjct: 269 ALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPII 328

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A       ED   ++ +MK KG + +V  Y  L++     G    A  +F  M S +   
Sbjct: 329 ALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM-SRDGVF 387

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           P++ T++++I I     ++  A  + N M   G  PN+     +I+ Y
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGY 435



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 110/235 (46%), Gaps = 1/235 (0%)

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
           D       R+   A+S L+      G     ++ Y  M + GV+PN++ YN +++ + + 
Sbjct: 169 DMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKD 228

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
                 +TI K++ ++ +SP+  TY S++  + R    +  L V+ +M ++G + +   Y
Sbjct: 229 GNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY 288

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           +TL+    D G  +EAF++  +M       P + T +  I      G   +A  +F +M 
Sbjct: 289 STLINGLCDSGRVNEAFDLIREM-ILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMK 347

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
             G EPN++  T+LI     +      +   +R+   G+ P+      L+N++ +
Sbjct: 348 NKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVE 402


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 182/374 (48%), Gaps = 2/374 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ +  F +C     A  +   ++  G +PD  TF+TLI+   + +  ++AV    RM  
Sbjct: 104 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVE 163

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            GC P+ +TY+S+++   ++G+  +A  L  +      + D   +ST+I      G  D 
Sbjct: 164 NGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDA 223

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            +++++EM+  G+K +++TYN+L+  + +A +      + K+MT   + PN  T+  L+ 
Sbjct: 224 AISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLID 283

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            + +    ++   +Y+EM  KG+  +   YN+L+          EA  +  D+    NC 
Sbjct: 284 VFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNML-DLMVRNNCS 342

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD  TF+S+I       +V E   +F ++ + G   N    + L+Q + ++ + +     
Sbjct: 343 PDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEEL 402

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIE 527
              +  LG+ PD    G LL+ +    K E+  ++ E ++KS   L  V+  ++ E   +
Sbjct: 403 FQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCK 462

Query: 528 GDFKKEATELFNSI 541
           G   ++A  LF S+
Sbjct: 463 GGKVEDAWNLFCSL 476



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 152/332 (45%), Gaps = 14/332 (4%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +    K  D   A  L   M +R VK D  T+ST+I     +   + A+  F+
Sbjct: 170 VVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFK 229

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGT 282
            M + G     +TY+S++    +AG       L     + K  I PN   F+ LI ++  
Sbjct: 230 EMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRK--IIPNVITFNVLIDVFVK 287

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G       +Y+EM   G+ PN ITYN+L+D      R  +   +   M  N  SP+  T
Sbjct: 288 EGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVT 347

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           + SL++ Y + +  ++ + ++R++ ++G+  +   Y+ L+      G  + A E+F++M 
Sbjct: 348 FTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEM- 406

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            S    PD  T+  ++      GK+ +A  +F ++ ++    ++ + T +I+   K  + 
Sbjct: 407 VSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKV 466

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           +D       LP  G+ P         NVMT T
Sbjct: 467 EDAWNLFCSLPCKGVKP---------NVMTYT 489



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 144/316 (45%), Gaps = 36/316 (11%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI +NV + VF K   L +A  L+ +M+ +G+ P+ +T+++L+    M N  ++A    +
Sbjct: 275 VITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLD 334

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M    C PD +T++S+I  Y +   V+    L+ +        +   +S L++ +  +G
Sbjct: 335 LMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSG 394

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +    +++EM ++GV P+++TY  LLD                 + DNG         
Sbjct: 395 KLEIAEELFQEMVSLGVLPDVMTYGILLDG----------------LCDNG--------- 429

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
                       E  L ++ ++++  M L + +Y  ++      G  ++A+ +F  +   
Sbjct: 430 ----------KLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSL-PC 478

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +  +P+  T++ MI+    +G +SEA  +  +M E G EPN     +LI+ + +      
Sbjct: 479 KGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTA 538

Query: 465 VVRALNRLPELGITPD 480
             + +  +   G + D
Sbjct: 539 SAKLIEEMKSCGFSAD 554



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 1/224 (0%)

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           FS       +   F+  L+  ++M+  G+  N+ T N +++   R  +     ++  ++ 
Sbjct: 68  FSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVM 127

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             G  P+  T+ +L+          + + +   M E G Q +V  YN+++      G T 
Sbjct: 128 KLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTS 187

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
            A ++   M    N + D +T+S++I      G +  A ++F EM   G + +L    SL
Sbjct: 188 LALDLLRKM-DERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSL 246

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           +    KA + +D V+ L  +    I P+      L++V  +  K
Sbjct: 247 VGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGK 290



 Score = 46.6 bits (109), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 76/149 (51%), Gaps = 2/149 (1%)

Query: 137 IILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+L+ + +      AL  F +  K K + ++++Y + ++   K   ++ A  LF  +  +
Sbjct: 420 ILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCK 479

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           GVKP+ +T++ +IS        ++A     +M   G +P+  TY+++I A+ R G++  +
Sbjct: 480 GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTAS 539

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             L +  ++  +  D ++   +I +  +A
Sbjct: 540 AKLIEEMKSCGFSADASSIKMVIDMLSSA 568


>gi|222626074|gb|EEE60206.1| hypothetical protein OsJ_13175 [Oryza sativa Japonica Group]
          Length = 789

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 117/505 (23%), Positives = 223/505 (44%), Gaps = 17/505 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +  F    +L +   LF +M   G  PD   +  L+    +     +AV    +M 
Sbjct: 90  YRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQ 149

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGN 285
           + GC P A TY  ++D YGR G  +   G+ +  R  +  + P+   ++ L +++G  G 
Sbjct: 150 ADGCPPTAATYRVLLDLYGRQGRFD---GVRELFREMRTTVPPDTATYNVLFRVFGDGGF 206

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F   + ++++M    V+P++ T  N++   GR       + +   +T  G+ P    Y  
Sbjct: 207 FKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTG 266

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ A G A   E+    +  M E G   ++  YN L    A  G   EA  IF  M ++ 
Sbjct: 267 LVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNA 326

Query: 406 NCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
             Q D  +F ++I    C+G ++ +A   + EM ++ F P+   L  ++  Y  A   D+
Sbjct: 327 AIQKDKDSFDALIE-AYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDE 385

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE--KSNSKLGYVVKLLL 521
                  L  +   P       +L++  +  +  +   L+E ++  +++S    +  ++ 
Sbjct: 386 SKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASMIK 445

Query: 522 EEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVY 579
            E D + +++     L NS  +  D    + N L+D+         A ++L+  L   ++
Sbjct: 446 GEYDDDSNWQMVEYVLDNSNLEGCDYSLRFFNALLDVLWWFGQKGRAARVLDQALKYGLF 505

Query: 580 TDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYS 639
            ++   +   WS  +  +S+G +L A+ +W+N L   L+  E+ P L  +    G+ + S
Sbjct: 506 PELFRDTKLVWSADVHRMSVGGSLVAVSVWLNKLYDRLKGDEDLPQLASVVVLRGQMEKS 565

Query: 640 --DKGL--ASVFESHLKE-LNAPFH 659
              +GL  A V  S L + L++ FH
Sbjct: 566 TVTRGLPIAKVVYSFLNDTLSSSFH 590



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 82/202 (40%), Gaps = 9/202 (4%)

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPW----QVKTIYKEMTDN---GLSPNWNTYASLLR 348
           MKA GV P   TYN +L    RA  P      +  ++ EM  +    + P+  TY +LL 
Sbjct: 1   MKASGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVRPDLTTYNTLLA 60

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A       + +  + R M E G+      Y  ++   A  G      E+F +M ++ +  
Sbjct: 61  AAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHT- 119

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD   +  ++   +  G  +EA A+  +M   G  P       L+  YG+  R D  VR 
Sbjct: 120 PDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDG-VRE 178

Query: 469 LNRLPELGITPDDRFCGCLLNV 490
           L R     + PD      L  V
Sbjct: 179 LFREMRTTVPPDTATYNVLFRV 200


>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
          Length = 1438

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 190/399 (47%), Gaps = 15/399 (3%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDT--------AALALTYFTNKLKASKEVILY 168
           DD   +L  + D  ++ D ++  N + N  +         AL L +   +     +VI Y
Sbjct: 238 DDARQLLDTMHDRGIDPD-LVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITY 296

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +    +  +L+ A  +F+DM+    +PD  T++ ++S         +A   F  +  
Sbjct: 297 NTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVE 356

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  PDA+TY+S++ A+ + GNV+      ++     ++ +   ++T+I +YG  G  D 
Sbjct: 357 KGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDL 416

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            + +Y+EM+A+G  P+ +TY  ++D++G+  R  +   + ++MTD GL P    +++L+ 
Sbjct: 417 AVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALIC 476

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           AY +     D  + +  M   G++     Y  +L + A  G T++   ++  M  ++N +
Sbjct: 477 AYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMM-NDNYR 535

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD   +  ++   +   K  E E +  +M E     NL ++++++    KA+      + 
Sbjct: 536 PDDDMYQVLLVALAKEDKCEEIEEVIQDM-ELLCRMNLGIISTMLI---KARCVSQGAKL 591

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECV 506
           L +    G  PD +    ++N    T K E G  L+EC+
Sbjct: 592 LKKACLQGYKPDIKSLRSIMNAYVMTEKHEEGLSLLECI 630



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 98/435 (22%), Positives = 189/435 (43%), Gaps = 36/435 (8%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  + V  +C   ++AERLF +++++G  PD +T+++L+         +K     E++ 
Sbjct: 331 YNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLV 390

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G   + +TY++MI  YG+ G +++A GLYD  R      D   ++ +I   G      
Sbjct: 391 KAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIA 450

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V E+M   G+KP +I ++ L+    +  R    +  +  M  +G+ P+   Y  +L
Sbjct: 451 EAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVML 510

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             + R+   E  L +YR+M     +    +Y  LL   A     +E  E+ +DM+    C
Sbjct: 511 DVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDMELL--C 568

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           + +    S+M+    C   VS+   +  +    G++P++  L S++  Y   ++ ++ + 
Sbjct: 569 RMNLGIISTMLIKARC---VSQGAKLLKKACLQGYKPDIKSLRSIMNAYVMTEKHEEGLS 625

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS--NSKLGYVVKLLLEEQD 525
            L              C C     +Q    E   ++ C +++  ++   Y  +L+L+  D
Sbjct: 626 LLE-------------CICEHVSFSQDLISECSIMLLCRKQTSISAYEQYSQRLMLKYPD 672

Query: 526 -------------IEGDFKKEATELF---NSISKDVKKAYCNCLIDLCVNLNLLENACKL 569
                        IE +F  EA ++F     I  +  K+    +I     L   E A +L
Sbjct: 673 QNCNLYEYLITCLIEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYCKLGFPETAHRL 732

Query: 570 LELGLTLEVYTDIQS 584
           ++  L   +  +I S
Sbjct: 733 MDDALQSGIPLNILS 747



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 117/505 (23%), Positives = 201/505 (39%), Gaps = 56/505 (11%)

Query: 167  LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD----NVTFSTLISCARMNNLP------ 216
            ++N  +  + +    +KA  +FD+M+  G  P     N     LI   R++ L       
Sbjct: 782  IWNALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEEL 841

Query: 217  -------------------NKAVEWFERMPSF------GCDPDALTYSSMID---AYGRA 248
                                KA + FE M  +      G  P+   Y SMI     + R 
Sbjct: 842  QDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRF 901

Query: 249  GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
             +VE+     + A    ++ D    + L+ +Y  AGNFD    VY  +   G++P+  TY
Sbjct: 902  RDVELMIAEMEGA---GFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTY 958

Query: 309  NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
            N L+    R+ RP +  T+  EM   GL+P   +Y SLL A  +A   E    ++ EM+ 
Sbjct: 959  NTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRS 1018

Query: 369  KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            K  QL+ ++Y+ ++ +  + G   +A  +   MK  +  +P   T   ++T     G+  
Sbjct: 1019 KSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKE-DGIEPTIATMHILMTSYGTAGQPR 1077

Query: 429  EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
            EAE + N +  +  E +    +++   Y K    +     L  +   G+ PD +   C +
Sbjct: 1078 EAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTCFI 1137

Query: 489  NVMTQTPKEELGKLVECVEKSNSKLGY--VVKLLLEEQDIEGDFKKEATELFNSISKDVK 546
               +   +     L+    KS    G+   ++LL E             E   ++     
Sbjct: 1138 RAASLCEQTADAILLL---KSLQDCGFDLPIRLLTERTPSLLSEIANYLEELEALEDSAA 1194

Query: 547  KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR-SPTQWSLHLKSLSLGAALTA 605
              + N + DL         A ++ +L +   +Y D   R +   W    + LS GAAL  
Sbjct: 1195 LNFVNAVEDLLWAFECRATASRIFQLAVERSIYRDNVFRVAQKDWGADFRKLSAGAALVG 1254

Query: 606  LHIWIND--------LSKALESGEE 622
            L +W++         L K  E GEE
Sbjct: 1255 LTLWLDHMQPLKIARLPKCGELGEE 1279



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 119/248 (47%), Gaps = 5/248 (2%)

Query: 164  EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
            ++ + N  + ++    + D+  +++  +L+ G++PD  T++TLI     +  P +     
Sbjct: 919  DLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLL 978

Query: 224  ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
              M   G  P   +Y S++ A  +A   E A  +++  R++ ++++ + +  ++K+Y  A
Sbjct: 979  NEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNA 1038

Query: 284  GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            GN     N+   MK  G++P + T + L+ + G A +P + + +   +  + L  +   Y
Sbjct: 1039 GNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPY 1098

Query: 344  ASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
            +++  AY +   Y   T  +  EMK  G++    ++   +   +    T +A  +   +K
Sbjct: 1099 STVFDAYLKNGDYNHGTTKLL-EMKRDGVEPDHQVWTCFIRAASLCEQTADAILL---LK 1154

Query: 403  SSENCQPD 410
            S ++C  D
Sbjct: 1155 SLQDCGFD 1162


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 168/363 (46%), Gaps = 5/363 (1%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD---RGVKPDNVTFSTLISCARMNN 214
           +L  + +V+ YN  +K F   +  ++A  L   M D   R   P+ V+++ +I+      
Sbjct: 158 ELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEG 217

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
             +KA   F  M   G  P+ +TY+++ID   +A  V+ A G++ +  ++  + D + ++
Sbjct: 218 QVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYN 277

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            LI  Y + G +   + + EEM A G+KP+  TY +LL+ +    R  + + ++  M   
Sbjct: 278 CLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRK 337

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G+ PN   Y  L+  Y       +   +   M E G+     ++N +    A     DEA
Sbjct: 338 GIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEA 397

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
             IF  MK  +   PD   + ++I      G+V +A   FN+M+  G  PN+FV  SL+ 
Sbjct: 398 MHIFNKMK-QQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVY 456

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQTPKEELGKLVECVEKSNSKL 513
                 + +        +   GI PD  F   +L N+ T+    +  +L++ +E+  ++ 
Sbjct: 457 GLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRP 516

Query: 514 GYV 516
           G +
Sbjct: 517 GVI 519



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 108/456 (23%), Positives = 190/456 (41%), Gaps = 49/456 (10%)

Query: 118 DVFSVLRCLGDDFLEQDCVI---ILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTM 172
           +V  +L  +    L+ DC     +LN + N      A   F + ++   +  V +Y + +
Sbjct: 291 EVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILI 350

Query: 173 KVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCD 232
             +     L +   L + M++ G+ PD+  F+ + +      + ++A+  F +M   G  
Sbjct: 351 HGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLS 410

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNE--------------------KW------ 266
           PD + Y ++IDA  + G V+ A   +++  NE                    KW      
Sbjct: 411 PDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEF 470

Query: 267 ---------RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
                    R D   F+T++    T G       + + M+ +G +P +I+Y  L+     
Sbjct: 471 YFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCL 530

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
             R  +       M   GL P+  TY +LL  Y RA   +D   V+REM   G+   V  
Sbjct: 531 VGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVT 590

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           Y+T+L          EA E++ +M +S   Q + W ++ ++   S    V EA  +F  +
Sbjct: 591 YSTILHGLFTTRRFSEAKELYLNMITSGK-QWNIWIYNIILNGLSKNNCVDEAFKLFQSL 649

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL--NVMTQTP 495
               F+  +     +I    K+ R +D +     +   G+ P D F  CL+  N++ +  
Sbjct: 650 CSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVP-DVFTYCLIAENLIEEGY 708

Query: 496 KEELGKLVECVEKS----NSK-LGYVVKLLLEEQDI 526
            EE   L   +EKS    NS+ L  +V+ LL   DI
Sbjct: 709 LEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDI 744



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 150/352 (42%), Gaps = 50/352 (14%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVE------WFERMP---SFG 230
           LD A +LFD +L        + F+ L++  +R++   +   E       F RM    +  
Sbjct: 30  LDDALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIK 89

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
             PD  TYS +I  + R G +E  F  +       WR++    + L+K    A      +
Sbjct: 90  VTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAM 149

Query: 291 NV-YEEMKAIGVKPNMITYNNLL--------------------DTMGRAKRPWQVK---- 325
           ++  + M  +G  P++++YN LL                    D+ GR+  P  V     
Sbjct: 150 DILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIV 209

Query: 326 --------------TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
                          ++ EM D G+ PN  TY +++    +A+  +    V+++M +KG+
Sbjct: 210 INGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGV 269

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
           +     YN L+     +G   E   + E+M S+   +PD +T+ S++      G+  EA 
Sbjct: 270 KPDNDTYNCLIHGYLSIGKWKEVVRMLEEM-SAHGLKPDCYTYGSLLNYLCNNGRCREAR 328

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
            +F+ M+  G +PN+ +   LI  Y       ++   LN + E G++PD   
Sbjct: 329 FLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHI 380



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 135/287 (47%), Gaps = 4/287 (1%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           +KA+  + +ML++G++PD V F+T++          KA    + M   G  P  ++Y+++
Sbjct: 465 EKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTL 524

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I  +   G ++ A    D   +   + D   ++TL+  Y  AG  D    V+ EM   G+
Sbjct: 525 IGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGI 584

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            P ++TY+ +L  +   +R  + K +Y  M  +G   N   Y  +L    +    ++   
Sbjct: 585 TPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFK 644

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           +++ +  K  QL +T +N ++      G  ++A  +F  + SS    PD +T+  +    
Sbjct: 645 LFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATI-SSYGLVPDVFTYCLIAENL 703

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
              G + E + +F+ M ++G  PN  +L +L++   +     D+ RA
Sbjct: 704 IEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVR---RLLHRGDITRA 747


>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
 gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
          Length = 668

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 148/315 (46%), Gaps = 1/315 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +  + +    + A  L  +M   GVKP +  FS +++  R      KA      M 
Sbjct: 337 YSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQ 396

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  PD   Y+ MID +G+   +  A   +DR R E+   D   ++TLI  +   G  D
Sbjct: 397 ASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHD 456

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + ++EEM+     P   TYN +++ +G  +R   V+ +  EM + GL PN  TY +L+
Sbjct: 457 RAMELFEEMRESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLV 516

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YGR+   ++ +     MK  G++ S T+Y+ L+   A  G  D A  + + MK ++  
Sbjct: 517 DVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMK-ADGL 575

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +      +S+I       +V EA ++   M E G  P++   T+L++   + ++ D V  
Sbjct: 576 EVSILVLNSLINAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFDKVPV 635

Query: 468 ALNRLPELGITPDDR 482
               +   G  PD +
Sbjct: 636 IYEEMITSGCAPDRK 650



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 154/347 (44%), Gaps = 41/347 (11%)

Query: 185 ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244
           ERL  D+ +  ++PD   FS LIS      LP+ A+E      + G  P +   +++I A
Sbjct: 213 ERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISA 272

Query: 245 YGRAGNVEMAFGLYDR---ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
            G AG V  A  L+     A   K R    A++ L+K Y   G+      V +EM   GV
Sbjct: 273 LGSAGRVAEAEALFLEFFLAGEIKPRT--RAYNALLKGYVRIGSLKNAEQVLDEMSQCGV 330

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            P+  TY+ L+D   RA R    + + KEM  +G+ P+   ++ +L  +      +   +
Sbjct: 331 APDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFA 390

Query: 362 VYREMKEKGMQLSVTLYNTLL-----------AMCA-----------DV----------- 388
           V REM+  G++     YN ++           AM A           DV           
Sbjct: 391 VLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHC 450

Query: 389 --GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G  D A E+FE+M+ S NC P + T++ MI +   + +    EAM +EM E G  PN+
Sbjct: 451 KGGRHDRAMELFEEMRES-NCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNI 509

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
              T+L+  YG++ R  + +  +  +   G+ P       L+N   Q
Sbjct: 510 ITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQ 556



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 141/321 (43%), Gaps = 13/321 (4%)

Query: 186 RLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFG------CDPDALTY 238
           RL   + +    PD  ++S L+ S     + P+ A+   ER+   G       +PDA  +
Sbjct: 176 RLLSLLREHDFLPDLASYSHLLASLLNTRDPPDAAL--LERL--LGDLRESRLEPDAPLF 231

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           S +I A+ RA   + A  L   A+        NA + LI   G+AG       ++ E   
Sbjct: 232 SDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGSAGRVAEAEALFLEFFL 291

Query: 299 IG-VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
            G +KP    YN LL    R       + +  EM+  G++P+  TY+ L+ AY RA   E
Sbjct: 292 AGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWE 351

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
               + +EM+  G++ S  +++ +LA   D G   +AF +  +M++S   +PD   ++ M
Sbjct: 352 SARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQAS-GVRPDRHFYNVM 410

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I        +  A   F+ M E   EP++    +LI  + K  R D  +     + E   
Sbjct: 411 IDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNC 470

Query: 478 TPDDRFCGCLLNVMTQTPKEE 498
            P       ++N++ +  + E
Sbjct: 471 PPGTTTYNIMINLLGEQERWE 491



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 89/179 (49%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ + +  +    +  E +  +M ++G+ P+ +T++TL+     +    +A++  E M 
Sbjct: 477 YNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMK 536

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  P    Y ++++AY + G  + A  +    + +   +     ++LI  +G      
Sbjct: 537 ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVV 596

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              +V + MK  G++P++ITY  L+  + R ++  +V  IY+EM  +G +P+    A L
Sbjct: 597 EAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAML 655



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 110/244 (45%), Gaps = 9/244 (3%)

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR---EMKEKGMQLSVTLYNTLLAMCAD 387
           + ++   P+  +Y+ LL +    R   D   + R   +++E  ++    L++ L++  A 
Sbjct: 181 LREHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFAR 240

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNL 446
               D A E+    ++     P S   +++I+     G+V+EAEA+F E   AG  +P  
Sbjct: 241 AALPDAALELLASAQAI-GLTPRSNAVTALISALGSAGRVAEAEALFLEFFLAGEIKPRT 299

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVEC 505
               +L++ Y +     +  + L+ + + G+ PD+     L++  T+  + E  + L++ 
Sbjct: 300 RAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKE 359

Query: 506 VEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSISKDVK--KAYCNCLIDLCVNLNL 562
           +E    K   YV   +L      GD++K    L    +  V+  + + N +ID     N 
Sbjct: 360 MEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNC 419

Query: 563 LENA 566
           L +A
Sbjct: 420 LGHA 423



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 60/140 (42%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I Y   + V+ +     +A    + M   G+KP    +  L++      L + A+   +
Sbjct: 509 IITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVK 568

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M + G +   L  +S+I+A+G    V  AF +    +    R D   ++TL+K      
Sbjct: 569 AMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTLMKALIRVE 628

Query: 285 NFDGCLNVYEEMKAIGVKPN 304
            FD    +YEEM   G  P+
Sbjct: 629 QFDKVPVIYEEMITSGCAPD 648


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 146/305 (47%), Gaps = 5/305 (1%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           DR   PD  +F+ +I          KA+E  ERM  FGC PD +T++ ++D   R   V 
Sbjct: 75  DRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVS 134

Query: 253 MAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
               +  R + +   + PN   F+++I  Y  AG  +  + VY +M A G+ PN +TYN 
Sbjct: 135 RGHEVLRRLQRDGVCM-PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNV 193

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L++  G+         +Y++MT     P+  T++SL+  Y R    +D L ++ +M +  
Sbjct: 194 LINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHR 253

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSE 429
           +Q +V  ++ ++        +DEA  +  ++    +  P ++ ++ +I  +C C GKV E
Sbjct: 254 IQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKC-GKVDE 312

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           A  +   M E G  P+ +  T LI  Y    R  + +   + + E G +PD     C ++
Sbjct: 313 ANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFIS 372

Query: 490 VMTQT 494
            + + 
Sbjct: 373 CLLKA 377



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 159/322 (49%), Gaps = 4/322 (1%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D  AL   +  +++  S +V  +NV +K   +   + KA  L + M + G  PD VT + 
Sbjct: 64  DVVALFERWIQDRVY-SPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNI 122

Query: 206 LISCARMNNLPNKAVEWFERMPSFG-CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
           L+      N  ++  E   R+   G C P+ +T++S+I  Y +AG +E A  +Y+     
Sbjct: 123 LVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 182

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
               +   ++ LI  YG  G+    + VY++M  +   P+++T+++L+D   R  +    
Sbjct: 183 GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDA 242

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLA 383
             I+ +M  + + PN  T++ ++ +  +    ++ + +  E+  +  +     +YN ++ 
Sbjct: 243 LRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVID 302

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
           +    G  DEA  I + M+  + C+PD +T++ +I     + ++SEA   F+EM+EAG  
Sbjct: 303 VLCKCGKVDEANLIRKGMEE-KGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCS 361

Query: 444 PNLFVLTSLIQCYGKAQRTDDV 465
           P+   +   I C  KA   ++V
Sbjct: 362 PDSITVNCFISCLLKAGMPNEV 383



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 139/289 (48%), Gaps = 8/289 (2%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G  PD    S L+S     NL + +     +   FGC  +A  Y+ ++ +    G V   
Sbjct: 6   GYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDV 65

Query: 255 FGLYDR-ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
             L++R  ++  +  D  +F+ +IK     G     L + E M   G  P+ +T+N L+D
Sbjct: 66  VALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVD 125

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
            + R     +   + + +  +G+  PN  T+ S++  Y +A   ED ++VY +M   G+ 
Sbjct: 126 GLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIM 185

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAE 431
            +   YN L+     VG    A E+++ M +   C PD  TFSS+I   C C G++ +A 
Sbjct: 186 PNTVTYNVLINGYGKVGDLGSAVEVYQQM-TRLRCPPDVVTFSSLIDGYCRC-GQLDDAL 243

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            ++++M +   +PN++  + +I    K  R+D+ +  LN   EL + PD
Sbjct: 244 RIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLN---ELNLRPD 289



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 87/227 (38%), Gaps = 9/227 (3%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM-GRAKRPWQVKTI 327
           D    S L+     A   D    +  +    G +     YN L+ ++ GR +    V   
Sbjct: 10  DARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALF 69

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            + + D   SP+  ++  +++   R    +  L +   M E G       +N L+     
Sbjct: 70  ERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCR 129

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
                   E+   ++    C P+  TF+S+I+     GK+ +A A++N+M+ +G  PN  
Sbjct: 130 TNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTV 189

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCGC 486
               LI  YGK       V    ++  L   PD        D +C C
Sbjct: 190 TYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRC 236



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 5/175 (2%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           +L+   +V+ ++  +  + +C  LD A R++ DM    ++P+  TFS +I      N  +
Sbjct: 216 RLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSD 275

Query: 218 KAVEWFERM---PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
           +A+     +   P     P A  Y+ +ID   + G V+ A  +      +  R D   ++
Sbjct: 276 EAIGLLNELNLRPDIA--PQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYT 333

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
            LI  Y         +  + EM   G  P+ IT N  +  + +A  P +V  + +
Sbjct: 334 ILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHVMR 388



 Score = 40.0 bits (92), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 14/166 (8%)

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
           T  G SP+    + L+ +   A   + + ++  +  E G ++    YN L++     G  
Sbjct: 3   THYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRV 62

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
            +   +FE         PD W+F+ +I      G+V +A  +   M E G  P+      
Sbjct: 63  HDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNI 122

Query: 452 LIQCYGKAQRTDDVVRA---LNRLPELGITPDDRFCGCLLNVMTQT 494
           L+       RT++V R    L RL   G+        C+ NV+T T
Sbjct: 123 LVD---GLCRTNEVSRGHEVLRRLQRDGV--------CMPNVVTFT 157


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 161/321 (50%), Gaps = 5/321 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI--SCARMNNLPNKA 219
           S  V  YN  +    K    ++A+ +F +ML  G+ PD+ T+ +L+  +C + + +  + 
Sbjct: 302 SPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEK 361

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           V  F  M S    PD + +SSM+  + R+GN++ A   ++  +      D   ++ LI+ 
Sbjct: 362 V--FSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQG 419

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           Y   G     +N+  EM   G   +++TYN +L  + + K   +   ++ EMT+  L P+
Sbjct: 420 YCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPD 479

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             T   L+  + +    ++ + ++++MKEK ++L V  YNTLL     VG  D A EI+ 
Sbjct: 480 SYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWA 539

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           DM S E   P   ++S ++     +G ++EA  +++EM+    +P + +  S+I+ Y ++
Sbjct: 540 DMVSKE-ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRS 598

Query: 460 QRTDDVVRALNRLPELGITPD 480
               D    L ++   G  PD
Sbjct: 599 GNASDGESFLEKMISEGFVPD 619



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 161/337 (47%), Gaps = 5/337 (1%)

Query: 151 ALTYFTNKLKASKEV---ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AL YF N +K +  +   ++Y + ++ + +   +  A  L ++ML +G   D VT++T++
Sbjct: 394 ALMYF-NSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTIL 452

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                  +  +A + F  M      PD+ T + +ID + + GN++ A  L+ + + ++ R
Sbjct: 453 HGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIR 512

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
           +D   ++TL+  +G  G+ D    ++ +M +  + P  I+Y+ L++ +       +   +
Sbjct: 513 LDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRV 572

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           + EM    + P      S+++ Y R+    D  S   +M  +G       YNTL+     
Sbjct: 573 WDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVR 632

Query: 388 VGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
                +AF + + M+  +    PD +T++S++     + ++ EAE +  +M+E G  P+ 
Sbjct: 633 EENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDR 692

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
              T +I  +       +  R  + + + G +PDD+F
Sbjct: 693 STYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDKF 729



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/430 (21%), Positives = 185/430 (43%), Gaps = 50/430 (11%)

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           C  +   +  +I  Y +A  +  A   +   R++ + +  +A + LI      G  +   
Sbjct: 161 CGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAW 220

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            VY+E+   GV  N+ T N +++ + +  +  +V T   ++ + G+ P+  TY +L+ AY
Sbjct: 221 GVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAY 280

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
                 E+   +   M  KG    V  YNT++      G  + A E+F +M  S    PD
Sbjct: 281 SSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS-GLSPD 339

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
           S T+ S++     +G V E E +F++M      P+L   +S++  + ++   D  +   N
Sbjct: 340 STTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFN 399

Query: 471 RLPELGITPDD--------RFC------------------GCLLNVMTQT-------PKE 497
            + E G+ PD+         +C                  GC ++V+T          ++
Sbjct: 400 SVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRK 459

Query: 498 ELGK----LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCL 553
            LG+      E  E++     Y + +L++     G+ +  A ELF  + +   +      
Sbjct: 460 MLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQN-AMELFQKMKEKRIR------ 512

Query: 554 IDLCVNLNLLENACKLLELGLTLEVYTDIQSR----SPTQWSLHLKSL-SLGAALTALHI 608
           +D+     LL+   K+ ++    E++ D+ S+    +P  +S+ + +L S G    A  +
Sbjct: 513 LDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRV 572

Query: 609 WINDLSKALE 618
           W   +SK ++
Sbjct: 573 WDEMISKNIK 582


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 174/369 (47%), Gaps = 13/369 (3%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +NV +    K  DL +A +L D+M  +G  P+ VT++TLI    +     KA+   +R
Sbjct: 270 VTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDR 329

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S  C P+ +TY ++I+   + G       +        + ++   +STLI      G 
Sbjct: 330 MVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGK 389

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               +++++EM   G + N I Y+ ++D + R  +P     +  EMT+ G +PN  T +S
Sbjct: 390 SQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSS 449

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSS 404
           L++ +  A      + V+++M +     +   Y+ L+  +C D G   EA  ++  M   
Sbjct: 450 LMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKD-GKVKEAMMVWTQM-LG 507

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG--FEPNLFVLTSLIQCYGKAQRT 462
           + C+PD   +SSMI   S  G V +A  ++NEML  G   +P++     L+    K    
Sbjct: 508 KGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSI 567

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVM------TQTPKEELGKLVECVEKSNSKLGY- 515
              +  LN + + G  PD   C   L ++       Q  +E L +LV  + K    LG  
Sbjct: 568 SRAIDLLNSMLDRGCDPDLVTCTIFLRMLREKLDPPQDGREFLDELVVRLLKRQRVLGAS 627

Query: 516 -VVKLLLEE 523
            +V+++L++
Sbjct: 628 KIVEVMLQK 636



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/458 (21%), Positives = 194/458 (42%), Gaps = 28/458 (6%)

Query: 25  FSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKS 84
           FSF     LS    ++    ++   +T  + P  H+Q+      + G        + P  
Sbjct: 20  FSFP-SKFLSLSMHSNFSAHAIPSTKTIETEPLNHTQHCNTTDQENG--------IEPDP 70

Query: 85  PRASKL-----KEKSY---DTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCV 136
           P + K+     K  SY   D+ + SL+   A+L    + E  V   ++C      E+  +
Sbjct: 71  PISDKIFKSGPKMGSYRLGDSTFYSLINNYANLGDFKSLEK-VLDRMKCEKRVIFEKCFI 129

Query: 137 IILNNMTN---PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           +I         P+ A         + +  +    +N  + V  +     +A   ++ ++ 
Sbjct: 130 VIFKAYGKAHLPEKAVDLFDRMACEFECKRTGKSFNSVLNVIIQEGLFHRALEFYNHVIG 189

Query: 194 -RGVK--PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
            +GV   P+ +TF+ +I       L + A++ F  M    C+PD  TY +++D   +A  
Sbjct: 190 AKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADR 249

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
           ++ A  L D  + +     P  F+ LI      G+      + + M   G  PN +TYN 
Sbjct: 250 IDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNT 309

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L+  +    +  +  ++   M  +   PN  TY +++    +     D   V   M+E+G
Sbjct: 310 LIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERG 369

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
             ++  +Y+TL++     G + EA  +F++M + +  + ++  +S++I      GK  +A
Sbjct: 370 YCVNEYVYSTLISGLFKEGKSQEAMHLFKEM-TVKGYELNTIVYSAVIDGLCRDGKPDDA 428

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDV 465
             + +EM   G  PN +  +SL++ +   G + R  +V
Sbjct: 429 VEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEV 466



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 81/204 (39%), Gaps = 34/204 (16%)

Query: 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFS 204
           PD A   L+  TNK   +      +  MK F +  +  +A  ++ DM       + V +S
Sbjct: 425 PDDAVEVLSEMTNK-GCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYS 483

Query: 205 TLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
            LI     +    +A+  + +M   GC PD + YSSMI+    AG VE A  LY    NE
Sbjct: 484 VLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLY----NE 539

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
                P++                             +P+++TYN LL+T+ +     + 
Sbjct: 540 MLCQGPDS-----------------------------QPDVVTYNILLNTLCKQSSISRA 570

Query: 325 KTIYKEMTDNGLSPNWNTYASLLR 348
             +   M D G  P+  T    LR
Sbjct: 571 IDLLNSMLDRGCDPDLVTCTIFLR 594


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 165/353 (46%), Gaps = 38/353 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +NV +    +  D + A  L D M+ +G+KP  VT+++++     + + +KA E F
Sbjct: 190 DVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVF 249

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M  FG  PD  +++ +I  + R G +E A  +Y   R+   + D  +FS LI L+   
Sbjct: 250 KEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARR 309

Query: 284 GNFD-----------------------------------GCLNVYEEMKAIGVKPNMITY 308
           G  D                                     L V +EM   G  P+++TY
Sbjct: 310 GKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTY 369

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N LL+ + + +R    + +  EM + G+ P+  T+ +L+  Y      +  L ++  M  
Sbjct: 370 NTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLN 429

Query: 369 KGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
           + ++  +  YNTL+  MC   G  D+A ++++DM S E   P+  T+S +I     +G+V
Sbjct: 430 QRLRPDIVTYNTLIDGMCRQ-GDLDKANDLWDDMHSRE-IFPNHVTYSILIDSHCEKGQV 487

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +A    +EM+  G  PN+    S+I+ Y ++       + L ++    ++PD
Sbjct: 488 EDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPD 540



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 145/282 (51%), Gaps = 1/282 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +    K R L  AE L ++M +RGV PD  TF+TLI    +    +KA++ F
Sbjct: 365 DVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLF 424

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M +    PD +TY+++ID   R G+++ A  L+D   + +   +   +S LI  +   
Sbjct: 425 DTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEK 484

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +      +EM   G+ PN++TYN+++    R+    + +   ++M  N +SP+  TY
Sbjct: 485 GQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITY 544

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+  Y +     D   +   M+++ +Q  V  YN L+   +  G   EA  IFE M  
Sbjct: 545 NTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKM-C 603

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
           ++  +PD +T+ SMI      G   EA  + +EML+ GF P+
Sbjct: 604 AKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 645



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 153/320 (47%), Gaps = 5/320 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWF 223
           ++Y + +  F +   +  A R+ D+M+  G  PD VT++TL++  C     L  + +   
Sbjct: 332 VIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL--L 389

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  PD  T++++I  Y   G ++ A  L+D   N++ R D   ++TLI      
Sbjct: 390 NEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQ 449

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+ D   +++++M +  + PN +TY+ L+D+     +         EM + G+ PN  TY
Sbjct: 450 GDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTY 509

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S+++ Y R+          ++M    +   +  YNTL+          +AF++  +M  
Sbjct: 510 NSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLL-NMME 568

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            E  QPD  T++ +I   S  G V EA  +F +M   G EP+ +   S+I  +  A  + 
Sbjct: 569 KEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSK 628

Query: 464 DVVRALNRLPELGITPDDRF 483
           +  +  + + + G  PDD+F
Sbjct: 629 EAFQLHDEMLQRGFAPDDKF 648



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 140/307 (45%), Gaps = 5/307 (1%)

Query: 150 LALTYFTNKLKASKEVILYNVTMKVFRKCRDL--DKAERLFDDMLDRGVKPDNVTFSTLI 207
           LA   +     ++ EV  Y + + V   C+ L  DK + +  +M  R V PD VT + ++
Sbjct: 139 LAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMV 198

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                      A+   + M S G  P  +TY+S++    R+G  + A+ ++    +    
Sbjct: 199 DARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVA 258

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D  +F+ LI  +   G  +  L +Y+EM+  G+KP++++++ L+    R  +       
Sbjct: 259 PDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAY 318

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCA 386
            +EM   GL P+   Y  ++  + RA    D L V  EM   G    V  YNTLL  +C 
Sbjct: 319 LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK 378

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           +    D A  +  +M+      PD  TF+++I      GK+ +A  +F+ ML     P++
Sbjct: 379 ERRLLD-AEGLLNEMR-ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDI 436

Query: 447 FVLTSLI 453
               +LI
Sbjct: 437 VTYNTLI 443



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 166/390 (42%), Gaps = 10/390 (2%)

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           P    F  LI     +  P +A E F  +        A   ++++ A  RAG   +A   
Sbjct: 84  PQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAADA 143

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
           Y    +    ++    + ++  Y  A  FD    V  EM+   V P+++T+N ++D   R
Sbjct: 144 YRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFR 203

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
           A        +   M   GL P   TY S+L+   R+   +    V++EM + G+   V  
Sbjct: 204 AGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRS 263

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           +  L+     VG  +EA +I+++M+     +PD  +FS +I + + RGK+  A A   EM
Sbjct: 264 FTILIGGFCRVGEIEEALKIYKEMR-HRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREM 322

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK- 496
              G  P+  + T +I  + +A    D +R  + +   G  PD      LLN + +  + 
Sbjct: 323 RCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRL 382

Query: 497 -EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID 555
            +  G L E  E+           L+    IEG   K A +LF+++     +       D
Sbjct: 383 LDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDK-ALQLFDTMLNQRLRP------D 435

Query: 556 LCVNLNLLENACKLLELGLTLEVYTDIQSR 585
           +     L++  C+  +L    +++ D+ SR
Sbjct: 436 IVTYNTLIDGMCRQGDLDKANDLWDDMHSR 465



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 56/100 (56%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S ++I YN  +  + K   +  A +L + M    V+PD VT++ LI+   ++    +A
Sbjct: 536 KVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEA 595

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD 259
              FE+M + G +PD  TY SMI+ +  AGN + AF L+D
Sbjct: 596 GWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHD 635


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 168/332 (50%), Gaps = 6/332 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           + ++  Y++ +    K + +DKAER+ + M++ G +P+++T+++LI    ++ + N++V 
Sbjct: 257 APDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVR 316

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F++M S G  P     +S I A  + G    A  ++D    +  + D  ++ST++  Y 
Sbjct: 317 VFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYA 376

Query: 282 TAGNFDGCL----NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           TA   D CL    N++  M   G+ PN   +N L++   R     +   I+++M + G+ 
Sbjct: 377 TAT--DSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMI 434

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P+  T+A+++ +  R    +D L  +  M + G+  S  +Y  L+  C + G   +A E+
Sbjct: 435 PDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKEL 494

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
             +M + +   P    FSS+I      G+V+E + + + M++ G  PN+    SL++ Y 
Sbjct: 495 ISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYC 554

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
                ++    L+ +  +GI P+    G L++
Sbjct: 555 LVGNMEEAFALLDAMASIGIEPNCYIYGTLVD 586



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 147/283 (51%), Gaps = 5/283 (1%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDP 233
           F K  ++DKA  LF +M+++GV P  +  +++I    +M  + +KA    ++M   G  P
Sbjct: 200 FVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEM-DKAESIVQKMVDSGIAP 258

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           D  TYS +ID   ++  ++ A  + ++      R +   +++LI  Y  +G ++  + V+
Sbjct: 259 DLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVF 318

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
           ++M + GV P +   N+ +  + +  R  + K I+  M   G  P+  +Y+++L  Y  A
Sbjct: 319 KQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATA 378

Query: 354 RYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
                 D  +++  M  KG+  +  ++N L+   A  G  D+A  IFEDM+ ++   PD+
Sbjct: 379 TDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQ-NKGMIPDT 437

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            TF+++I+     G++ +A   FN M++ G  P+  V   LIQ
Sbjct: 438 VTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQ 480



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 149/341 (43%), Gaps = 45/341 (13%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMN 213
            T  +  +K V  +N+ +  + +C  +DKA  +F+DM ++G+ PD VTF+T+IS   R+ 
Sbjct: 394 LTKGIAPNKHV--FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIG 451

Query: 214 NLPNKAVEWFERMPSFGCDPDALTY----------------------------------- 238
            L + A+  F  M   G  P    Y                                   
Sbjct: 452 RL-DDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKY 510

Query: 239 -SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
            SS+I+   + G V     + D       R +   F++L++ Y   GN +    + + M 
Sbjct: 511 FSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMA 570

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
           +IG++PN   Y  L+D   +  R     T++++M   G+ P    Y+ +L    +AR   
Sbjct: 571 SIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTT 630

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
               ++ EM E G  +S+  Y  +L        TDEA  + E +  + N + D  TF+ +
Sbjct: 631 AAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKL-FAMNVKFDIITFNIV 689

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNL----FVLTSLIQ 454
           I+     G+  EA+ +F+ +   G  PN+     ++T+LI+
Sbjct: 690 ISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIK 730



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 137/287 (47%), Gaps = 10/287 (3%)

Query: 210 ARMNNLPNKAVEWFERMPSFGCD----PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           A   + P  A+E F+RM  + C     P   TY+ +ID Y R    ++   +  R    K
Sbjct: 127 AACGDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLL--K 184

Query: 266 WRIDPNAFS-TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
             + P+ FS +LI  +   G  D    ++ EM   GV P ++  N+++  + + K   + 
Sbjct: 185 NGLGPDDFSYSLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKA 244

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
           ++I ++M D+G++P+  TY+ ++    +++  +    V  +M E G + +   YN+L+  
Sbjct: 245 ESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHG 304

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
            +  G  +E+  +F+ M SS    P     +S I      G+ +EA+ +F+ M+  G +P
Sbjct: 305 YSISGMWNESVRVFKQM-SSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKP 363

Query: 445 NLFVLTSLIQCYGKAQRT--DDVVRALNRLPELGITPDDRFCGCLLN 489
           ++   ++++  Y  A  +   DV    N +   GI P+      L+N
Sbjct: 364 DIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILIN 410



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 134/292 (45%), Gaps = 10/292 (3%)

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           R   P   T++ LI C R  + P+  +    R+   G  PD  +Y S+I  + + G V+ 
Sbjct: 150 RHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDK 208

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  L+     +         +++IK        D   ++ ++M   G+ P++ TY+ ++D
Sbjct: 209 AHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIID 268

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
            + ++K   + + + ++M + G  PN  TY SL+  Y  +    +++ V+++M   G+  
Sbjct: 269 GLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIP 328

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-----TICSCRGKVS 428
           +V   N+ +      G T+EA  IF+ M   +  +PD  ++S+M+        SC   ++
Sbjct: 329 TVDNCNSFIHALFKHGRTNEAKCIFDSM-VLKGPKPDIISYSTMLHGYATATDSC---LA 384

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +   +FN ML  G  PN  V   LI  Y +    D  +     +   G+ PD
Sbjct: 385 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPD 436



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 8/192 (4%)

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE--DTL 360
           P + TYN L+D   R  RP     I   +  NGL P+  +Y+ +   YG  + GE     
Sbjct: 154 PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLI---YGFVKDGEVDKAH 210

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-T 419
            ++ EM E+G+   + + N+++     +   D+A  I + M  S    PD +T+S +I  
Sbjct: 211 CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS-GIAPDLFTYSLIIDG 269

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           +C  +  + +AE +  +M+EAG  PN     SLI  Y  +   ++ VR   ++   G+ P
Sbjct: 270 LCKSKA-MDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIP 328

Query: 480 DDRFCGCLLNVM 491
               C   ++ +
Sbjct: 329 TVDNCNSFIHAL 340


>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
          Length = 595

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 149/313 (47%), Gaps = 1/313 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I YN+ ++ + K R L+KAE ++  +L+    P   T++ L+         ++A    
Sbjct: 174 DIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVI 233

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  P+A  Y++ +D   +A   E A  +Y R + E+ R +   F+ +I +YG A
Sbjct: 234 SEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKA 293

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                 + V+ EMK+IG KPN+ TY  L++   R     + + +++EM   G  P+   Y
Sbjct: 294 KQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAY 353

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ AY RA   +    ++  M+  G +     YN L+      G  ++A  +FE++K 
Sbjct: 354 NALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELK- 412

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                P   +   ++   +  G  +  E +  ++ ++G  P+ F L +++  Y +A R D
Sbjct: 413 QRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLD 472

Query: 464 DVVRALNRLPELG 476
           D+ R    +   G
Sbjct: 473 DMERLFAAMERRG 485



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 181/405 (44%), Gaps = 33/405 (8%)

Query: 117 DDVFSVLRCLGDDFLE-----QDCVIILNNMTN-PDTAALALTYFTNKLKASKEVILYNV 170
           D VF VL  +  D LE      D   I  ++ N P T  L    F +         L NV
Sbjct: 99  DGVFPVLSPMAQDILEFVQKGTDVAKIWESLDNIPSTHNL----FDD---------LVNV 145

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRG-VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
            ++ FR  +  D    + + +L R   +PD + ++ LI         NKA   +  +   
Sbjct: 146 AVQ-FRMNKKWDLIIPVCEWILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEA 204

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFD 287
            C P   TY+ ++ AY  AG++  A G+    R     I PNA  ++  +     A   +
Sbjct: 205 QCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHG--IPPNATVYNAYLDGLLKARCTE 262

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + VY+ MK    + N  T+  +++  G+AK+P     ++ EM   G  PN  TY +L+
Sbjct: 263 KAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALV 322

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A+ R    E    V+ EM++ G +  V  YN L+   +  G    A EIF  M+    C
Sbjct: 323 NAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHM-GC 381

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDD 464
           +PD  +++ ++      G   +AEA+F E+ + G  P +     L+  +   G A R ++
Sbjct: 382 EPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEE 441

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 508
           V+  L++    G+TPD      +LN   +  + +++ +L   +E+
Sbjct: 442 VMAQLHK---SGLTPDTFALNAMLNAYARAGRLDDMERLFAAMER 483



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 119/273 (43%), Gaps = 2/273 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +  Y   +  F +    +KAE +F++M   G +PD   ++ L+       LP  A E F 
Sbjct: 315 ICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFS 374

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   GC+PD  +Y+ ++DAYGRAG  E A  +++  +         +   L+  +  +G
Sbjct: 375 LMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSG 434

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N   C  V  ++   G+ P+    N +L+   RA R   ++ ++  M   G   +  TY 
Sbjct: 435 NATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRG-DADVGTYN 493

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
             + AYGRA Y     + +  +  +G+   V  +   +   A          + E+M  +
Sbjct: 494 VAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDA 553

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
             C PD+ T   ++  CS   +V +  A+   M
Sbjct: 554 -GCYPDAGTARVLLAACSDERQVEQVTAIVRSM 585


>gi|299471535|emb|CBN80021.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 607

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 163/353 (46%), Gaps = 11/353 (3%)

Query: 136 VIILNNMTNPDT------AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFD 189
           VII N+  N          A++L      +  + +VI Y+  +    +    ++A  LF+
Sbjct: 138 VIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELFE 197

Query: 190 DMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
           DM   GV PD +T+ + I+         +AV    ++P+ G  P+ ++YSS+I A  + G
Sbjct: 198 DMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEG 257

Query: 250 NVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
             ++A  L    +    R+ PN   ++  I      G +   +++  EM  +G+ P++++
Sbjct: 258 QWKIALDLLREMKAM--RLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVS 315

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           Y++++D   +  R  +   I +EM   GLSPN  +Y S + A  +    ++   + REM 
Sbjct: 316 YSSVIDACSKGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMP 375

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
             G+   V  YN+ +A CA      EA  +  +M +        +++SS I  C      
Sbjct: 376 TAGVTQRVIGYNSAIAACAKGEQWKEALALLREMPTV-GLHTTVFSYSSAIDACGKGNLW 434

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +A+ +  EM   G  PN     S I   G+  + ++ V  L  +P +G++PD
Sbjct: 435 IKAKELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPD 487



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 150/332 (45%), Gaps = 1/332 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L      ++ +  +I YN  +    K     +A  L  +M   G+ PD V++S++I 
Sbjct: 262 ALDLLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVID 321

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                +   +A++    MP+ G  P+A++Y+S IDA  + G  + A GL           
Sbjct: 322 ACSKGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQ 381

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
               +++ I        +   L +  EM  +G+   + +Y++ +D  G+     + K + 
Sbjct: 382 RVIGYNSAIAACAKGEQWKEALALLREMPTVGLHTTVFSYSSAIDACGKGNLWIKAKELL 441

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           +EM   GL+PN   Y S + A GR    E+ + + REM   G+   V  Y++ +A CA  
Sbjct: 442 REMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSSAIAACAKG 501

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
               EA  + ++M S+    PD   ++S I  CS  G+   A A+  EM  AG  PN+  
Sbjct: 502 DQWKEALAVLKEM-SAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEMRAAGLTPNIIS 560

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +S I    +  +  + +  L  +   G+ PD
Sbjct: 561 YSSAIDACVRGGQWKEGIALLEEMRGSGVVPD 592



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 147/319 (46%), Gaps = 5/319 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI+YN  +    K    + A  L  +M   G+ PD +++S+ IS         +A+E FE
Sbjct: 138 VIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELFE 197

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGT 282
            M + G  PD +TY S I A    G  + A  L  +       + PN  ++S++I     
Sbjct: 198 DMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVG--LTPNVISYSSVITACAK 255

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G +   L++  EMKA+ + PN+ITYN  +D   +  R  +   + +EM   GL P+  +
Sbjct: 256 EGQWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVS 315

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y+S++ A  +    ++ + + REM   G+  +   YN+ +  CA  G   EA  +  +M 
Sbjct: 316 YSSVIDACSKGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMP 375

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           ++   Q     ++S I  C+   +  EA A+  EM   G    +F  +S I   GK    
Sbjct: 376 TAGVTQ-RVIGYNSAIAACAKGEQWKEALALLREMPTVGLHTTVFSYSSAIDACGKGNLW 434

Query: 463 DDVVRALNRLPELGITPDD 481
                 L  +  +G+ P++
Sbjct: 435 IKAKELLREMATVGLAPNE 453



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 139/303 (45%), Gaps = 4/303 (1%)

Query: 180 DLDKAERLFDDMLD-RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           D  KA R  D M    G   D  ++   I+         +AV     MP+ G  PD   Y
Sbjct: 12  DWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSAY 71

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           S++IDA  + G  +MA         +    D  ++   I      G +   L++  EM A
Sbjct: 72  SAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAAINACARGGRWKIALDLLREMLA 131

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVK-TIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
             V PN+I YN+ +++  +A + W++  ++ KEM   GL+P+  +Y+S + A GR    E
Sbjct: 132 RDVTPNVIIYNSAINSCAKAGQ-WEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWE 190

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           + L ++ +M+  G+   V  Y + +A CA+ G   EA  +   + +     P+  ++SS+
Sbjct: 191 EALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTV-GLTPNVISYSSV 249

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           IT C+  G+   A  +  EM      PN+    + I    K  R  + +  L  +P +G+
Sbjct: 250 ITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGL 309

Query: 478 TPD 480
            PD
Sbjct: 310 PPD 312



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 143/332 (43%), Gaps = 36/332 (10%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           ++A RL  +M   G  PD   +S +I           AV +   MP+ G  PDA +Y + 
Sbjct: 50  EQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAA 109

Query: 242 IDAYGRAGNVEMAFGL---------------YDRARNE-----KWRI------------- 268
           I+A  R G  ++A  L               Y+ A N      +W I             
Sbjct: 110 INACARGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGL 169

Query: 269 --DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             D  ++S+ I   G  G ++  L ++E+M+  GV P++ITY + +       R  +  +
Sbjct: 170 APDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVS 229

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           + +++   GL+PN  +Y+S++ A  +    +  L + REMK   +  ++  YN  +  CA
Sbjct: 230 LLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACA 289

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G   EA ++  +M +     PD  ++SS+I  CS   +  EA  +  EM   G  PN 
Sbjct: 290 KGGRWKEAIDLLREMPTV-GLPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVGLSPNA 348

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
               S I    K  +  +    L  +P  G+T
Sbjct: 349 ISYNSAIDACAKGGQWKEAKGLLREMPTAGVT 380



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 100/225 (44%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           ++ VI YN  +    K     +A  L  +M   G+     ++S+ I      NL  KA E
Sbjct: 380 TQRVIGYNSAIAACAKGEQWKEALALLREMPTVGLHTTVFSYSSAIDACGKGNLWIKAKE 439

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
               M + G  P+ + Y+S IDA GR    E A  L           D  ++S+ I    
Sbjct: 440 LLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSSAIAACA 499

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
               +   L V +EM A G+ P++I YN+ +D   +  R      +  EM   GL+PN  
Sbjct: 500 KGDQWKEALAVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEMRAAGLTPNII 559

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +Y+S + A  R    ++ +++  EM+  G+   V  Y+ L+  CA
Sbjct: 560 SYSSAIDACVRGGQWKEGIALLEEMRGSGVVPDVITYHALMVTCA 604



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 4/154 (2%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  +    +    ++A  L  +M   G+ PD  ++S+ I+     +   +A+   + 
Sbjct: 454 VCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSSAIAACAKGDQWKEALAVLKE 513

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTA 283
           M + G  PD + Y+S IDA  + G  +MA  L    R     + PN  ++S+ I      
Sbjct: 514 MSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEMRAAG--LTPNIISYSSAIDACVRG 571

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
           G +   + + EEM+  GV P++ITY+ L+ T  +
Sbjct: 572 GQWKEGIALLEEMRGSGVVPDVITYHALMVTCAK 605



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 40/97 (41%)

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           +A    + MK       D  ++   IT C   G+  +A  +  EM   G  P+L   +++
Sbjct: 15  KALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSAYSAV 74

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           I    K  +    V  L  +P  GI PD R  G  +N
Sbjct: 75  IDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAAIN 111


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 167/340 (49%), Gaps = 14/340 (4%)

Query: 148 AALALTYF----TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF 203
           A LAL +F     +    S     +N  ++V  +C+   +A  LF   L    +PD  ++
Sbjct: 56  AKLALAFFRWAPASIPGFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSY 115

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
           + +IS        + A+E  E M S G  PDA T++ +I A   AG+++   G  D  R+
Sbjct: 116 NIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLD---GAMDHLRS 172

Query: 264 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
                DPN   ++ LI  +  A   +  + + EEM+  G  PN++TYN L+D + +    
Sbjct: 173 --MGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMV 230

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
              + + K+M + G +PN  T+ SL+  + +    +D   +   M  KGM+ +V  Y+ L
Sbjct: 231 GAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSAL 290

Query: 382 L-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
           +  +C    +  EA E+ E+MK +    PD++T+S++I       K+ EAE M   M  +
Sbjct: 291 IDGLCKSQKFL-EAKEVLEEMK-TRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGS 348

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           G  P++ V +S+I  + K+ +  +  + L  + +   +PD
Sbjct: 349 GCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPD 388



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 162/352 (46%), Gaps = 37/352 (10%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y   +  F + + L++A +L ++M +RG  P+ VT++ L+      ++   A +  +
Sbjct: 179 VVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVK 238

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M   G  P+ +T++S++D + + GNV+ A  L      +  R +   +S LI     + 
Sbjct: 239 KMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQ 298

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            F     V EEMK  GV P+  TY+ L+  + +A +  + + + + M  +G +P+   Y+
Sbjct: 299 KFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYS 358

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           S++ A+ ++    +     +EM+++     V  YNT++     +G   EA  I E M+ S
Sbjct: 359 SIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQES 418

Query: 405 ENCQPDSWTFSSMIT------------------------------------ICSCRGKVS 428
            +  PD  T+S++I                                     +C C G++ 
Sbjct: 419 GDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKC-GRLE 477

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           EAE +   M  AG  PN+   T+LI    KA++ D+  R +  +   G  P+
Sbjct: 478 EAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPN 529



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 174/379 (45%), Gaps = 52/379 (13%)

Query: 155 FTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-AR 211
           F ++L AS E  V  YN+ +  F    DL  A  L ++M   G  PD  T + +I+  A 
Sbjct: 100 FRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMAN 159

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE------- 264
             +L        + + S GCDP+ +TY+++I A+ RA  +E A  L +  R         
Sbjct: 160 AGDLDGA----MDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLV 215

Query: 265 ----------------------KWRID----PNA--FSTLIKLYGTAGNFDGCLNVYEEM 296
                                 K  I+    PN   F++L+  +   GN D    +   M
Sbjct: 216 TYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM 275

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
            A G++PN++TY+ L+D + ++++  + K + +EM   G++P+  TY++L+    +A   
Sbjct: 276 VAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKI 335

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           E+   + R M   G    V +Y++++      G   EA +  ++M+      PD  T+++
Sbjct: 336 EEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRK-SPDVVTYNT 394

Query: 417 MITICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           +I      GK++EA+ +  +M E+G   P++   +++I    K+    +  + L+R+ + 
Sbjct: 395 VIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKA 454

Query: 476 GITPD--------DRFCGC 486
           G  PD        D  C C
Sbjct: 455 GCNPDVVTYTTIIDGLCKC 473



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 153/312 (49%), Gaps = 8/312 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEW 222
           V+ +N  +  F K  ++D A +L   M+ +G++P+ VT+S LI   C     L  +A E 
Sbjct: 249 VMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFL--EAKEV 306

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            E M + G  PDA TYS++I    +A  +E A  +  R        D   +S++I  +  
Sbjct: 307 LEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCK 366

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWN 341
           +G         +EM+     P+++TYN ++D + +  +  + + I ++M ++G + P+  
Sbjct: 367 SGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVV 426

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++    ++    +   +   M + G    V  Y T++      G  +EA  + + M
Sbjct: 427 TYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGM 486

Query: 402 KSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           K +  C P+  T++++I+ +C  R KV EAE +  EM  AG  PNL    +++     + 
Sbjct: 487 KRA-GCAPNVVTYTTLISGLCKAR-KVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSG 544

Query: 461 RTDDVVRALNRL 472
           R  +  + + R+
Sbjct: 545 RIKEAQQLVQRM 556



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 130/295 (44%), Gaps = 13/295 (4%)

Query: 195 GVKPDNVTFSTLISCARM-----NNLPNK--AVEWFERMPSF--GCDPDALTYSSMIDAY 245
            ++PD   FS   +  R+     N+L +   A+ +F   P+   G    A +++S++   
Sbjct: 28  AIEPDLSPFSGASTTPRIVGRVVNSLKDAKLALAFFRWAPASIPGFSHTAFSWNSLLQVL 87

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
            R      A  L+          D  +++ +I  +  AG+    L + EEMK+ G  P+ 
Sbjct: 88  VRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDA 147

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
            T+  ++  M  A     +      +   G  PN  TY +L+ A+ RA+  E+ + +  E
Sbjct: 148 FTHTPIITAMANA---GDLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEE 204

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M+E+G   ++  YN L+     +     A ++ + M       P+  TF+S++     RG
Sbjct: 205 MRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEG-GFAPNVMTFNSLVDGFCKRG 263

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            V +A  +   M+  G  PN+   ++LI    K+Q+  +    L  +   G+TPD
Sbjct: 264 NVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPD 318



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 119/257 (46%), Gaps = 3/257 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAV 220
           + +V++Y+  +  F K   L +A++   +M  +   PD VT++T+I    ++  +    V
Sbjct: 351 TPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQV 410

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
              +   S    PD +TYS++I+   ++  +  A  L DR        D   ++T+I   
Sbjct: 411 ILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGL 470

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G  +    + + MK  G  PN++TY  L+  + +A++  + + + +EM + G  PN 
Sbjct: 471 CKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNL 530

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIF 398
            TY +++     +   ++   + + MK+   + S     Y T++          EA ++ 
Sbjct: 531 VTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLL 590

Query: 399 EDMKSSENCQPDSWTFS 415
           E MKS+ + Q +  + +
Sbjct: 591 EQMKSTTSSQQEQGSLT 607



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 4/165 (2%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           ++N +   D    A        KA  + +V+ Y   +    KC  L++AE L   M   G
Sbjct: 431 VINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG 490

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
             P+ VT++TLIS        ++A    E M + GC P+ +TY++M++    +G ++ A 
Sbjct: 491 CAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQ 550

Query: 256 GLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKA 298
            L  R ++ +    P+A  + T++    ++        + E+MK+
Sbjct: 551 QLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMKS 595


>gi|357444885|ref|XP_003592720.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481768|gb|AES62971.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 553

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 155/318 (48%), Gaps = 7/318 (2%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           + K  D + AE++   M   G  P+ V+ + L+         N A   F RM +FG +P 
Sbjct: 150 YGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGGRYNNAEAIFRRMQTFGPEPS 209

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEK---WRIDPNAFSTLIKLYGTAGNFDGCLN 291
           A TY  ++  + +    + A  ++D+  N++    R D   F+ +I +Y  +G+ +    
Sbjct: 210 AFTYQIILKTFVQGNKFKEAEEVFDKLLNDEKSPLRPDQKMFNMMIYMYKKSGSHEKARQ 269

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
            +  M   G+K   +TYN+L+      K   +V  IY +M    L P+  +YA L+ AYG
Sbjct: 270 TFALMAERGIKKATVTYNSLMSFETNYK---EVSNIYDQMQRADLRPDVVSYALLINAYG 326

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           +AR  E+ L+V+ EM + G++ +   YN LL   +  G  ++A  +F+ M+  +   PD 
Sbjct: 327 KARREEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQARIVFKSMR-RDKYMPDL 385

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            ++++M++       +  AE  F  +++ GFEPN+    +LI+ Y KA   + V+     
Sbjct: 386 CSYTTMLSAYVNAPDMEGAEKFFKRLIQDGFEPNVVTYGTLIKGYAKANDIEKVMEKYEE 445

Query: 472 LPELGITPDDRFCGCLLN 489
           +   GI  +      +++
Sbjct: 446 MLGRGIKANQTILTTIMD 463



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 135/283 (47%), Gaps = 16/283 (5%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC----ARMNNLPNKAVEW 222
           ++N+ + +++K    +KA + F  M +RG+K   VT+++L+S       ++N+       
Sbjct: 250 MFNMMIYMYKKSGSHEKARQTFALMAERGIKKATVTYNSLMSFETNYKEVSNI------- 302

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           +++M      PD ++Y+ +I+AYG+A   E A  +++   +   R    A++ L+  +  
Sbjct: 303 YDQMQRADLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFSI 362

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           +G  +    V++ M+     P++ +Y  +L     A      +  +K +  +G  PN  T
Sbjct: 363 SGMVEQARIVFKSMRRDKYMPDLCSYTTMLSAYVNAPDMEGAEKFFKRLIQDGFEPNVVT 422

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +L++ Y +A   E  +  Y EM  +G++ + T+  T++      G  D A   F++M 
Sbjct: 423 YGTLIKGYAKANDIEKVMEKYEEMLGRGIKANQTILTTIMDAHGKNGDFDSAVNWFKEM- 481

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
           +     PD    + ++++      + EA    NE++    E N
Sbjct: 482 ALNGLLPDQKAKNILLSLAKTEEDIKEA----NELVLHSIEIN 520



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 116/247 (46%), Gaps = 8/247 (3%)

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
           RA+N  W      F  LI  YG  G+F+G   V   M   G  PN+++   L++  G+  
Sbjct: 131 RAQNW-WDFGKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGG 189

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM---KEKGMQLSVT 376
           R    + I++ M   G  P+  TY  +L+ + +    ++   V+ ++   ++  ++    
Sbjct: 190 RYNNAEAIFRRMQTFGPEPSAFTYQIILKTFVQGNKFKEAEEVFDKLLNDEKSPLRPDQK 249

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
           ++N ++ M    G  ++A + F  M +    +  + T++S+++  +   +VS    ++++
Sbjct: 250 MFNMMIYMYKKSGSHEKARQTFALM-AERGIKKATVTYNSLMSFETNYKEVSN---IYDQ 305

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           M  A   P++     LI  YGKA+R ++ +     + + G+ P  +    LL+  + +  
Sbjct: 306 MQRADLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGM 365

Query: 497 EELGKLV 503
            E  ++V
Sbjct: 366 VEQARIV 372



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 6/171 (3%)

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            ++K+  D     NW     L+   G A      +SV    K K   +   L    L   
Sbjct: 61  VVFKDAADEAEQKNWWRLMKLIDETGSA------VSVLNSEKMKNQTIPKALVVGTLMRF 114

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
             +   +   EI E +++          F  +IT     G  + AE +   M + G+ PN
Sbjct: 115 KQLKKWNLVAEILEWLRAQNWWDFGKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYAPN 174

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           +   T+L++ YGK  R ++      R+   G  P       +L    Q  K
Sbjct: 175 VVSQTALMEAYGKGGRYNNAEAIFRRMQTFGPEPSAFTYQIILKTFVQGNK 225


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 166/344 (48%), Gaps = 3/344 (0%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
           ++  M  PD   ++L     + +   ++  + + +K F  C  L  A   F  +   G+ 
Sbjct: 88  VVVRMERPDLV-ISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLH 146

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           PD VTF+TL+    + +  ++A+  F +M    C P+ +T++++++   R G +  A  L
Sbjct: 147 PDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMG 316
            DR   +  +     + T++      G+    L++  +M+ I  + PN++ Y+ ++D++ 
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLC 266

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +  R    + ++ EM + G+ P+  TY S++  +  +    D   + +EM E+ +   V 
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            YN L+      G   EA E++++M       P++ T+SSMI     + ++  AE MF  
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEML-PRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           M   G  PNL    +LI  Y  A+R DD +  L+ + E G+  D
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 151/325 (46%), Gaps = 33/325 (10%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S +V+ YN  +  F K     +AE L+D+ML RG+ P+ +T+S++I      N  + A
Sbjct: 320 KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAA 379

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              F  M + GC P+ +T++++ID Y  A  ++    L           D   ++TLI  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQV-KTIYKEMTDNG 335
           +   G+ +  L++ +EM + G+ P+++T + LLD +   G+ K   ++ K + K   D  
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
            S  +N                            G++  V  YN L++   + G   EA 
Sbjct: 500 ASHPFN----------------------------GVEPDVQTYNILISGLINEGKFLEAE 531

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           E++E+M       PD+ T+SSMI     + ++ EA  MF+ M    F PN+   T+LI  
Sbjct: 532 ELYEEM-PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 456 YGKAQRTDDVVRALNRLPELGITPD 480
           Y KA R DD +     +   GI  +
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVAN 615



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 136/330 (41%), Gaps = 45/330 (13%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           + P+ V +S +I     +   + A   F  M   G  PD  TY+SMI  +  +G    A 
Sbjct: 251 IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L       K   D   ++ LI  +   G F     +Y+EM   G+ PN ITY++++D  
Sbjct: 311 QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGF 370

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +  R    + ++  M   G SPN  T+ +L+  Y  A+  +D + +  EM E G+    
Sbjct: 371 CKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADT 430

Query: 376 TLYNTLL----------------------AMCADV-------------GYTDEAFEIFED 400
           T YNTL+                       +C D+             G   +A E+F+ 
Sbjct: 431 TTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKV 490

Query: 401 MKSSE----------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
           M+ S+            +PD  T++ +I+     GK  EAE ++ EM   G  P+    +
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYS 550

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           S+I    K  R D+  +  + +     +P+
Sbjct: 551 SMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 127/278 (45%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A++ F  M      P  + +  ++    R    ++   LY +   ++ R D  +F+ LIK
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIK 122

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            + +       L+ + ++  +G+ P+++T+N LL  +    R  +   ++ +M +    P
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRP 182

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N  T+ +L+    R     + +++   M E G+Q +   Y T++     +G T  A ++ 
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLL 242

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
             M+   +  P+   +S++I      G+ S+A+ +F EM E G  P+LF   S+I  +  
Sbjct: 243 RKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           + R  D  + L  + E  I+PD      L+N   +  K
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 140/320 (43%), Gaps = 12/320 (3%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F + + L+ A  LF DML     P  V F  L+        P+  +  +++M       D
Sbjct: 54  FHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCD 113

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
             +++ +I  +     +  A   + +        D   F+TL+            LN++ 
Sbjct: 114 IYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFH 173

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           +M     +PN++T+  L++ + R  R  +   +   M ++GL P   TY +++    +  
Sbjct: 174 QMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIG 233

Query: 355 YGEDTLSVYREMKEKGMQL-SVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
                L + R+M+E    + +V +Y+ ++ ++C D G   +A  +F +M+  +   PD +
Sbjct: 234 DTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKD-GRHSDAQNLFTEMQ-EKGIFPDLF 291

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T++SMI      G+ S+AE +  EMLE    P++    +LI  + K  +  +     + +
Sbjct: 292 TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351

Query: 473 PELGITPD--------DRFC 484
              GI P+        D FC
Sbjct: 352 LPRGIIPNTITYSSMIDGFC 371


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 149/317 (47%), Gaps = 18/317 (5%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           LD AE+ + +ML+ GV  + V  S    C        KA      M S G  PD  TYS 
Sbjct: 168 LDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSK 227

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I     A  VE AF L+   +      D   ++TLI  +  AG  +   N ++EM+  G
Sbjct: 228 VIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDG 287

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
             PN++TY  L+    ++++  +   +Y+ M   G +PN  TY +L+    +A   E   
Sbjct: 288 CAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKAS 347

Query: 361 SVYREMKEKGMQL-----------------SVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +Y+ MK++ +++                 +V  Y  L+          EA ++ + M S
Sbjct: 348 QIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSM-S 406

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            E C+P+   + ++I  C   GK+ EA+ +F  MLE G++PN++  +SLI    K +R D
Sbjct: 407 VEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLD 466

Query: 464 DVVRALNRLPELGITPD 480
             ++ L+++ E    P+
Sbjct: 467 LALKVLSKMLENSCAPN 483



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 18/307 (5%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V +Y   +  F K   +++A   FD+M   G  P+ VT++ LI     +   +KA E +
Sbjct: 256 DVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVY 315

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI--------------- 268
           E M S GC P+ +TY+++ID   +AG +E A  +Y   + E   I               
Sbjct: 316 EMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASN 375

Query: 269 DPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           +PN F+   L+     A       ++ + M   G +PN + Y+ L+D   +A +  + + 
Sbjct: 376 EPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQE 435

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           ++  M + G  PN  TY+SL+    + +  +  L V  +M E     +V +Y  ++    
Sbjct: 436 VFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLC 495

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
            VG TDEA+++   M   + C P+  T+++MI      G+V +   +  +M   G  PN 
Sbjct: 496 KVGKTDEAYKLMV-MMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNF 554

Query: 447 FVLTSLI 453
                LI
Sbjct: 555 VTYRVLI 561



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 145/322 (45%), Gaps = 7/322 (2%)

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           PD V ++ +IS     +L  +A+++  RM +  C P+ LTY  ++        +     +
Sbjct: 40  PDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRI 99

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
                 E     P  F++L+  Y  +G++     + ++M   G +P  + YN L+  +  
Sbjct: 100 LSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICS 159

Query: 318 AKRPWQ-----VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           ++ P +      +  Y EM + G+  N    ++  R        E   +V REM  KG  
Sbjct: 160 SEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFI 219

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
              + Y+ ++    +    ++AF++F++MK +    PD + ++++I      G + +A  
Sbjct: 220 PDTSTYSKVIGYLCNASKVEKAFQLFQEMKRN-GIAPDVYVYTTLIDSFCKAGFIEQARN 278

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            F+EM   G  PN+   T+LI  Y K+++          +   G TP+      L++ + 
Sbjct: 279 WFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLC 338

Query: 493 QTPK-EELGKLVECVEKSNSKL 513
           +  K E+  ++ + ++K N ++
Sbjct: 339 KAGKIEKASQIYKIMKKENVEI 360



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 138/343 (40%), Gaps = 36/343 (10%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWF 223
           V  Y   +    K   + +A  L   M   G +P++V +  LI  C +   L ++A E F
Sbjct: 379 VFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKL-DEAQEVF 437

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G DP+  TYSS+ID   +   +++A  +  +        +   ++ +I      
Sbjct: 438 TTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKV 497

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D    +   M+  G  PN++TY  ++D  G++ R  +   + ++M+  G +PN+ TY
Sbjct: 498 GKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTY 557

Query: 344 ASLLRAYGRARYGEDTLSVYREMKE----------------------KGMQLSVTL---- 377
             L+         ++   +  EMK+                        + LS  +    
Sbjct: 558 RVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNREFIASLYLSFEISEND 617

Query: 378 -------YNTLLAMCADVGYTDEAFEIFEDMKS-SENCQPDSWTFSSMITICSCRGKVSE 429
                  Y  L+      G  + A E+ E++ S S     +     ++I   S   K  +
Sbjct: 618 SVPVAPVYRVLIDNFIKAGRLEIALELNEELSSFSPFSAANQNIHITLIENLSLAHKADK 677

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           A  ++ +M+  G  P L +L  LI+   +  R ++ ++ L+ +
Sbjct: 678 AFELYADMISRGSIPELSILVHLIKGLLRVNRWEEALQLLDSI 720



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 118/296 (39%), Gaps = 46/296 (15%)

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M + G   D  T      +  ++G    A  L ++   E++  D   ++ +I     A  
Sbjct: 1   MSTMGYRMDEFTLGCFAHSLCKSGKWREALSLLEK---EEFVPDTVLYTKMISGLCEASL 57

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F+  ++    M+A    PN++TY  LL      ++  + K I   M   G  P+   + S
Sbjct: 58  FEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNS 117

Query: 346 LLRAYGRA------------------------------------RYGEDTLSV----YRE 365
           L+ AY R+                                      G+D L +    Y E
Sbjct: 118 LVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGE 177

Query: 366 MKEKGMQLS-VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           M E G+ L+ V + N    +C  +G  ++A+ +  +M  S+   PD+ T+S +I      
Sbjct: 178 MLEAGVVLNKVNISNFSRCLCG-IGKFEKAYNVIREMM-SKGFIPDTSTYSKVIGYLCNA 235

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            KV +A  +F EM   G  P+++V T+LI  + KA   +      + +   G  P+
Sbjct: 236 SKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPN 291


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 171/365 (46%), Gaps = 11/365 (3%)

Query: 124 RCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDK 183
           R +  D +   C+I L +       A A       L    + ++Y + +  F +   + +
Sbjct: 291 RGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSE 350

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
           A R+ D+M+  G  PD VT++TL++     +    A E    M   G  PD  T++++I 
Sbjct: 351 ALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIH 410

Query: 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
            Y R GN E A  L+D   +++ R D  A+++LI      G+      ++++M A  + P
Sbjct: 411 GYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFP 470

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           N +TY+ L+D+     +  +      EM   G  PN  TY S+++ Y R+   +      
Sbjct: 471 NHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFL 530

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDE-----AFEIFEDMKSSENCQPDSWTFSSMI 418
           ++M +  +   +  +NTL+      GY  E     AF +F  M+  E  QPD+ T++ +I
Sbjct: 531 QKMMQDNILPDLITFNTLIH-----GYIKEENMHGAFNVFNIMEK-EMVQPDAVTYNMII 584

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
              S +G + EA  +F +M  +G EP+ +   SLI  +  A  + +  +  + +   G  
Sbjct: 585 NGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFA 644

Query: 479 PDDRF 483
           PDD+F
Sbjct: 645 PDDKF 649



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 161/353 (45%), Gaps = 38/353 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +NV +    +  D+D A  L D M ++G+KP  VTF++++     +   +KA E F
Sbjct: 191 DVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVF 250

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M      PD  +++ +I  + R G VE A   Y   +      D  +FS LI L+ T 
Sbjct: 251 RAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTR 310

Query: 284 GNFDG-----------------------------------CLNVYEEMKAIGVKPNMITY 308
           G  D                                     L V +EM  +G  P+++TY
Sbjct: 311 GKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTY 370

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N LL+ + +  R    + +  EM + G++P+  T+ +L+  Y R    E  L ++  +  
Sbjct: 371 NTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLH 430

Query: 369 KGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
           + ++  V  YN+L+  MC   G   +A E+++DM + E   P+  T+S +I     +G+V
Sbjct: 431 QRLRPDVVAYNSLIDGMCRK-GDLAKANELWDDMHARE-IFPNHVTYSILIDSHCEKGQV 488

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            EA    +EM+  G  PN+    S+I+ Y ++       + L ++ +  I PD
Sbjct: 489 EEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPD 541



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 170/392 (43%), Gaps = 14/392 (3%)

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           P    F  LI     +  P +A E F  +        A   ++++ A  RAG   +A   
Sbjct: 85  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAALSRAGWPHLAEEA 144

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
           Y    +    ++    + ++  Y  +  FD    V  EM+   V P+++T+N L+D   R
Sbjct: 145 YRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFR 204

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
           A        +   M + GL P   T+ S+L+   + R  +    V+R M +  +   V  
Sbjct: 205 AGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRS 264

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           +N L+     VG  +EA + +++M+      PD  +FS +I + S RGK+  A A   EM
Sbjct: 265 FNILIGGFCRVGEVEEAMKFYKEMQ-QRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREM 323

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK- 496
              G  P+  + T +I  + +A    + +R  + +  LG  PD      LLN + +  + 
Sbjct: 324 KGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRL 383

Query: 497 ---EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCL 553
              EEL  L E  E+  +        L+     +G+F+K A +LF+++     +      
Sbjct: 384 LDAEEL--LNEMKERGVTPDLCTFTTLIHGYCRDGNFEK-ALQLFDTLLHQRLRP----- 435

Query: 554 IDLCVNLNLLENACKLLELGLTLEVYTDIQSR 585
            D+    +L++  C+  +L    E++ D+ +R
Sbjct: 436 -DVVAYNSLIDGMCRKGDLAKANELWDDMHAR 466


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 144/278 (51%), Gaps = 7/278 (2%)

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALT 237
           + L +A  L  +M  RG++ +  T+S L++ C + N L + A++ + +M + GC P+ +T
Sbjct: 209 QQLRRALELVAEMRSRGIQCNVHTYSALMNVCIKGNEL-DLALDVYRQMLAEGCTPNLVT 267

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP--NAFSTLIKLYGTAGNFDGCLNVYEE 295
           Y+++ID YG+ G  E A  + D    E+  IDP    ++T+I     +G     L +YE 
Sbjct: 268 YNTLIDVYGKTGAWEEAIRVLDAL--ERQGIDPEIRTYNTVIIACNMSGQAQEALRIYER 325

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M A G +P   TY  L+   G+  +  +   I+++M   G   N  TY+SL+ A  +A  
Sbjct: 326 MLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGR 385

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            E  L ++REM  +G + +V  YN+L+A CA     ++A E+FE M+    C+PD+ TF 
Sbjct: 386 WELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQ-HRGCKPDAVTFG 444

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
            +I      G    A   F +M      P+  V  +++
Sbjct: 445 GLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIV 482



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 160/330 (48%), Gaps = 9/330 (2%)

Query: 172 MKVFRKCRDLDKAERLFD------DMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFE 224
           +K   K   + +A+ LFD      D  D     + +T++T+IS C     L  +A+E   
Sbjct: 161 LKELNKSGHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQL-RRALELVA 219

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M S G   +  TYS++++   +   +++A  +Y +   E    +   ++TLI +YG  G
Sbjct: 220 EMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTG 279

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            ++  + V + ++  G+ P + TYN ++     + +  +   IY+ M   G  P   TY 
Sbjct: 280 AWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTYT 339

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+ AYG+    +  L ++++M  +G + +V  Y++L++ C   G  + A E+F +M  +
Sbjct: 340 ALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELALELFREMH-T 398

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           E C+P+  T++S+I  C+   +  +A+ MF +M   G +P+      LI  Y +A     
Sbjct: 399 EGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAVTFGGLIAAYDRAGHWRR 458

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQT 494
            + A  ++      PD      ++  + +T
Sbjct: 459 ALTAFEQMKAHNCRPDSVVYNTIVGALWKT 488



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 127/255 (49%), Gaps = 3/255 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  Y+  M V  K  +LD A  ++  ML  G  P+ VT++TLI          +A+   +
Sbjct: 230 VHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLD 289

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G DP+  TY+++I A   +G  + A  +Y+R      +     ++ LI  YG  G
Sbjct: 290 ALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKNG 349

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TIYKEMTDNGLSPNWNTY 343
             D  L ++++M   G + N+ITY++L+    +A R W++   +++EM   G  PN  TY
Sbjct: 350 QLDRALQIFQDMVRRGCERNVITYSSLISACEKAGR-WELALELFREMHTEGCRPNVVTY 408

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            SL+ A  +    E    ++ +M+ +G +     +  L+A     G+   A   FE MK 
Sbjct: 409 NSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMK- 467

Query: 404 SENCQPDSWTFSSMI 418
           + NC+PDS  +++++
Sbjct: 468 AHNCRPDSVVYNTIV 482



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 122/236 (51%), Gaps = 2/236 (0%)

Query: 150 LALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           LAL  +   L    +  ++ YN  + V+ K    ++A R+ D +  +G+ P+  T++T+I
Sbjct: 248 LALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVI 307

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
               M+    +A+  +ERM + G  P A TY+++I AYG+ G ++ A  ++         
Sbjct: 308 IACNMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCE 367

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            +   +S+LI     AG ++  L ++ EM   G +PN++TYN+L+    +  +  + + +
Sbjct: 368 RNVITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEM 427

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
           +++M   G  P+  T+  L+ AY RA +    L+ + +MK    +    +YNT++ 
Sbjct: 428 FEQMQHRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVG 483



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 111/238 (46%), Gaps = 15/238 (6%)

Query: 99  YNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDC-----VIILNNMTNPDTAALALT 153
           YN+L+    D+   +   ++   VL  L    ++ +      VII  NM+     AL + 
Sbjct: 268 YNTLI----DVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIY 323

Query: 154 YFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
                  A      Y   +  + K   LD+A ++F DM+ RG + + +T+S+LIS     
Sbjct: 324 ERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKA 383

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
                A+E F  M + GC P+ +TY+S+I A  +    E A  ++++ ++   + D   F
Sbjct: 384 GRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAVTF 443

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
             LI  Y  AG++   L  +E+MKA   +P+ + YN ++  +      W+   ++ ++
Sbjct: 444 GGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGAL------WKTGLVWAQI 495


>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 146/305 (47%), Gaps = 5/305 (1%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           DR   PD  +F+ +I          KA+E  ERM  FGC PD +T++ ++D   R   V 
Sbjct: 247 DRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVS 306

Query: 253 MAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
               +  R + +   + PN   F+++I  Y  AG  +  + VY +M A G+ PN +TYN 
Sbjct: 307 RGHEVLRRLQRDGVCM-PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNV 365

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L++  G+         +Y++MT     P+  T++SL+  Y R    +D L ++ +M +  
Sbjct: 366 LINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHR 425

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSE 429
           +Q +V  ++ ++        +DEA  +  ++    +  P ++ ++ +I  +C C GKV E
Sbjct: 426 IQPNVYTFSIIIHSLCKQNRSDEAICLLNELNLRPDIAPQAFIYNPVIDVLCKC-GKVDE 484

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           A  +   M E G  P+ +  T LI  Y    R  + +   + + E G +PD     C ++
Sbjct: 485 ANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFIS 544

Query: 490 VMTQT 494
            + + 
Sbjct: 545 CLLKA 549



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 159/322 (49%), Gaps = 4/322 (1%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D  AL   +  +++  S +V  +NV +K   +   + KA  L + M + G  PD VT + 
Sbjct: 236 DVVALFERWIQDRVY-SPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNI 294

Query: 206 LISCARMNNLPNKAVEWFERMPSFG-CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
           ++      N  ++  E   R+   G C P+ +T++S+I  Y +AG +E A  +Y+     
Sbjct: 295 IVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 354

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
               +   ++ LI  YG  G+    + VY++M  +   P+++T+++L+D   R  +    
Sbjct: 355 GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDA 414

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLA 383
             I+ +M  + + PN  T++ ++ +  +    ++ + +  E+  +  +     +YN ++ 
Sbjct: 415 LRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNELNLRPDIAPQAFIYNPVID 474

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
           +    G  DEA  I + M+  + C+PD +T++ +I     + ++SEA   F+EM+EAG  
Sbjct: 475 VLCKCGKVDEANLIRKGMEE-KGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCS 533

Query: 444 PNLFVLTSLIQCYGKAQRTDDV 465
           P+   +   I C  KA   ++V
Sbjct: 534 PDSITVNCFISCLLKAGMPNEV 555



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 149/309 (48%), Gaps = 11/309 (3%)

Query: 178 CRDLDKAE--RLFDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           CR   +A+  +LFD M    G  PD    S L+S     NL + +     +   FGC  +
Sbjct: 158 CRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVE 217

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDR-ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           A  Y+ ++ +    G V     L++R  ++  +  D  +F+ +IK     G     L + 
Sbjct: 218 AYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELV 277

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGR 352
           E M   G  P+ +T+N ++D + R     +   + + +  +G+  PN  T+ S++  Y +
Sbjct: 278 ERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCK 337

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
           A   ED ++VY +M   G+  +   YN L+     VG    A E+++ M +   C PD  
Sbjct: 338 AGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQM-TRLRCPPDVV 396

Query: 413 TFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
           TFSS+I   C C G++ +A  ++++M +   +PN++  + +I    K  R+D+ +  LN 
Sbjct: 397 TFSSLIDGYCRC-GQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLN- 454

Query: 472 LPELGITPD 480
             EL + PD
Sbjct: 455 --ELNLRPD 461



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 101/264 (38%), Gaps = 10/264 (3%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLN 291
           P A +   +I    R+G    A  L+D+      +  D    S L+     A   D    
Sbjct: 145 PSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASAT 204

Query: 292 VYEEMKAIGVKPNMITYNNLLDTM-GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
           +  +    G +     YN L+ ++ GR +    V    + + D   SP+  ++  +++  
Sbjct: 205 LLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGV 264

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
            R    +  L +   M E G       +N ++             E+   ++    C P+
Sbjct: 265 CRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPN 324

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
             TF+S+I+     GK+ +A A++N+M+ +G  PN      LI  YGK       V    
Sbjct: 325 VVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQ 384

Query: 471 RLPELGITPD--------DRFCGC 486
           ++  L   PD        D +C C
Sbjct: 385 QMTRLRCPPDVVTFSSLIDGYCRC 408



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 5/175 (2%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           +L+   +V+ ++  +  + +C  LD A R++ DM    ++P+  TFS +I      N  +
Sbjct: 388 RLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSD 447

Query: 218 KAVEWFERM---PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
           +A+     +   P     P A  Y+ +ID   + G V+ A  +      +  R D   ++
Sbjct: 448 EAICLLNELNLRPDIA--PQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYT 505

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
            LI  Y         +  + EM   G  P+ IT N  +  + +A  P +V  + +
Sbjct: 506 ILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHVMR 560


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 155/317 (48%), Gaps = 1/317 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y+  +  F K  DLDK    +++MLD+ + P+ VT++++I+        +KA+E  
Sbjct: 11  DVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEVL 70

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  PD +TY+S++  +  +G  + A     + R++    D   +++L+      
Sbjct: 71  TTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKN 130

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       +++ M   G+KP++ TY  LL          ++  +   M  NG+ PN   +
Sbjct: 131 GRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 190

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+ AY +    E+ + V+ +M+++G+  +   Y T++ +    G  ++A   FE M  
Sbjct: 191 SILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQM-I 249

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            E  +PDS  ++S+I       K  +AE +F EML+ G   +     S+I  + K  R  
Sbjct: 250 DEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVI 309

Query: 464 DVVRALNRLPELGITPD 480
           + V+  + +  +G+ PD
Sbjct: 310 ESVKLFDLMVRIGVKPD 326



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 124/252 (49%), Gaps = 5/252 (1%)

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDG 288
           C PD ++YS++I+ + + G+++  +  Y+   ++  RI PN   ++++I     A   D 
Sbjct: 8   CPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDK--RISPNVVTYNSIIAALCKAQTVDK 65

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            + V   M   GV P+ +TYN+++     + +P +     K+M  +G+ P+  TY SL+ 
Sbjct: 66  AMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMD 125

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
              +     +   ++  M ++G++  +T Y TLL   A  G   E   +  D+       
Sbjct: 126 YLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIH 184

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           P+ + FS ++   + + KV EA  +F++M + G  PN     ++I    K+ R +D +  
Sbjct: 185 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 244

Query: 469 LNRLPELGITPD 480
             ++ + G+ PD
Sbjct: 245 FEQMIDEGLRPD 256



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 120/230 (52%), Gaps = 1/230 (0%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D  ++ST+I  +   G+ D   + Y EM    + PN++TYN+++  + +A+   +   + 
Sbjct: 11  DVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEVL 70

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             M  +G+ P+  TY S++  +  +   ++ +   ++M+  G++  V  YN+L+      
Sbjct: 71  TTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKN 130

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G   EA +IF+ M +    +PD  T+ +++   + +G + E   + + M+  G  PN +V
Sbjct: 131 GRCTEARKIFDSM-TKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 189

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
            + L+  Y K ++ ++ +   +++ + G+ P+    G +++V+ ++ + E
Sbjct: 190 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVE 239



 Score = 45.8 bits (107), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 38/75 (50%)

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           +C PD  ++S++I      G + +  + +NEML+    PN+    S+I    KAQ  D  
Sbjct: 7   DCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKA 66

Query: 466 VRALNRLPELGITPD 480
           +  L  + + G+ PD
Sbjct: 67  MEVLTTMVKSGVMPD 81


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 191/426 (44%), Gaps = 45/426 (10%)

Query: 188 FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
           F  ++   + P++ TF+ L+           A+    +M  FG  PDA+TY+++++A+ R
Sbjct: 197 FHSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCR 256

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
            G +  A  L  R + E        ++TL+  Y   G      +V E M A G +P++ T
Sbjct: 257 KGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWT 316

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           YN L   + +A +  +   +  EM   G+ SP+  TY +L+ A  + +   D L++  EM
Sbjct: 317 YNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEM 376

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           +EKG++ S+  +N ++      G  +EA    E M + E   PD  T++++I      G 
Sbjct: 377 REKGVKSSLVTHNIIVKGLCREGQLEEALGRLE-MMTEEGLTPDVITYNTLIDASCKAGN 435

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG- 485
           V++A  + +EM+ +G + + F L +L+    K +R ++    L   P+ G  PD+   G 
Sbjct: 436 VAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGT 495

Query: 486 ---------------CLLNVMTQ---TPK-----------EELGKLVECVEKSNS--KLG 514
                          CL + M +   TP              +GKL E ++K N   ++G
Sbjct: 496 VMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMG 555

Query: 515 YV---------VKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLEN 565
            V         +    +E D+E  F+     + NS   DV    CN L++       LE 
Sbjct: 556 LVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDV--VTCNTLMNGLCLYGRLEK 613

Query: 566 ACKLLE 571
           A KL E
Sbjct: 614 AMKLFE 619



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/417 (22%), Positives = 182/417 (43%), Gaps = 7/417 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V+ YN  +    KC+    A  L ++M ++GVK   VT + ++          +A+ 
Sbjct: 347 SPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALG 406

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             E M   G  PD +TY+++IDA  +AGNV  AF L D       ++D    +TL+    
Sbjct: 407 RLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLC 466

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
               ++    +       G  P+ ++Y  ++    +  +P     ++ EM    L+P+ +
Sbjct: 467 KEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSIS 526

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +L++         + +    E+ E G+    T YN ++      G  ++AF+ F + 
Sbjct: 527 TYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQ-FHNK 585

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
               + +PD  T ++++      G++ +A  +F   +E G + ++    +LIQ   K   
Sbjct: 586 MVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDND 645

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE-ELGKLVECVEKSNSKLGYV---- 516
            D  +R    +   G+ PD      LL+ +++  +  E  K++  + +S    G      
Sbjct: 646 VDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESGKLYGRFFYPS 705

Query: 517 VKLLLEEQDIEGDFK-KEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 572
           +K  +E  +   D + K   E   +   D +++Y   + +LC+   L E    L E+
Sbjct: 706 IKSSVEAVETGKDPEVKSDIESVGNTQGDDQESYNKYIKELCIGGQLKEAKAVLDEM 762



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 138/298 (46%), Gaps = 5/298 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRG-VKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           YNV      +   +D+A +L D+M   G V PD VT++TL+         + A+   E M
Sbjct: 317 YNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEM 376

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G     +T++ ++    R G +E A G  +    E    D   ++TLI     AGN 
Sbjct: 377 REKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNV 436

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                + +EM   G+K +  T N LL  + + KR  + + + +     G  P+  +Y ++
Sbjct: 437 AKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTV 496

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + AY +    E  L ++ EM ++ +  S++ YNTL+   + +G   EA +   ++     
Sbjct: 497 MAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEM-G 555

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ---CYGKAQR 461
             PD  T++ +I      G + +A    N+M+E  F+P++    +L+     YG+ ++
Sbjct: 556 LVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEK 613



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 126/280 (45%), Gaps = 4/280 (1%)

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGC-DPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           + L + AR+  LP+ A +        GC  P     ++++ A  R+ +      L     
Sbjct: 141 AALSTYARLR-LPHLAAQLLHSFRRRGCVRPSLQAANAVLSALARSPSTSPQASLDAFHS 199

Query: 263 NEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
               R+ PN   F+ L+  + + G     L+   +M+  G+ P+ +TYN LL+   R   
Sbjct: 200 LIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGM 259

Query: 321 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 380
             + +T+   M   G+ P   TY +L+ AY R  + +    V   M   G +  +  YN 
Sbjct: 260 LGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNV 319

Query: 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
           L A     G  DEAF++ ++M+      PD  T+++++  C    + S+A  +  EM E 
Sbjct: 320 LAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREK 379

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           G + +L     +++   +  + ++ +  L  + E G+TPD
Sbjct: 380 GVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPD 419



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 133/297 (44%), Gaps = 2/297 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   M  + K    + A  L+D+M+ R + P   T++TLI          +A++    
Sbjct: 491 VSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNE 550

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +   G  PD  TY+ +I AY + G++E AF  +++     ++ D    +TL+      G 
Sbjct: 551 LMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGR 610

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  + ++E     G K ++ITYN L+  + +          + +M   GL P+  TY  
Sbjct: 611 LEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNV 670

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           LL A   A    +   +  ++ E G       Y ++ +    V  T +  E+  D++S  
Sbjct: 671 LLSALSEAGRSVEAQKMLHKLNESGKLYGRFFYPSIKSSVEAVE-TGKDPEVKSDIESVG 729

Query: 406 NCQPDSW-TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           N Q D   +++  I      G++ EA+A+ +EM++ G   +     +L++   K Q+
Sbjct: 730 NTQGDDQESYNKYIKELCIGGQLKEAKAVLDEMMQKGMSVDNSTYITLMEGLIKRQK 786


>gi|168025874|ref|XP_001765458.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683308|gb|EDQ69719.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 670

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 160/370 (43%), Gaps = 37/370 (10%)

Query: 147 TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           + AL L  +  K    + +  +N  M    +C   D A  LF++M   G+ PD +TF+ L
Sbjct: 234 SQALKLFRWMEKAGIERPIFTFNALMVACGRCASGDTAVELFEEMEKLGIVPDRITFTGL 293

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY-------- 258
           +S      L ++A  + + M + G       Y  M  A  RA     A+GL+        
Sbjct: 294 VSATTAAGLWDRAQSFIDMMQARGFSIGLHEYIEMQWACARARKPREAYGLFQVMLEQGY 353

Query: 259 ---------------------DRARNEKWRIDPN------AFSTLIKLYGTAGNFDGCLN 291
                                D  R   W  D        ++S+LI     AG  +  L 
Sbjct: 354 ELKLESYNALLCAYERTAQWEDAMRTFIWIQDKGLTPDVMSWSSLISACANAGQAERALE 413

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           V E MK    +PN++++  LL    +     + + I+  M D+G  PN   + SLL AY 
Sbjct: 414 VLERMKTSDCQPNVVSWCGLLKAYQKTGNWEKAEEIFHAMLDSGCPPNEVAWCSLLSAYE 473

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           + R  +  L    +++E GM+L V  ++T ++  A  G  + A E F+ M  S  C P+ 
Sbjct: 474 KGRQWKKVLYTIEKLEELGMKLDVVAWSTTISALAKAGQWELAEEKFKQMTKS-GCLPNI 532

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            T+SS+I      G   +AE++F  ML  G  PN     +L++ YGK +  + V+     
Sbjct: 533 VTYSSLIKAYGDVGLWEKAESVFKLMLRVGIRPNPQACCALLRAYGKGKELEKVIIFFES 592

Query: 472 L-PELGITPD 480
           + P+ G+ PD
Sbjct: 593 MEPQYGVEPD 602



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 164/335 (48%), Gaps = 5/335 (1%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           NV +    + ++   A ++F      GV+P+    +TLI+        ++A++ F  M  
Sbjct: 186 NVVVWQLGQMQNWYAATKVFRAFRSAGVEPNAYVCTTLIAALGCGRRLSQALKLFRWMEK 245

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNF 286
            G +    T+++++ A GR  + + A  L++    EK  I P+   F+ L+     AG +
Sbjct: 246 AGIERPIFTFNALMVACGRCASGDTAVELFEEM--EKLGIVPDRITFTGLVSATTAAGLW 303

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D   +  + M+A G    +  Y  +     RA++P +   +++ M + G      +Y +L
Sbjct: 304 DRAQSFIDMMQARGFSIGLHEYIEMQWACARARKPREAYGLFQVMLEQGYELKLESYNAL 363

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L AY R    ED +  +  +++KG+   V  +++L++ CA+ G  + A E+ E MK+S +
Sbjct: 364 LCAYERTAQWEDAMRTFIWIQDKGLTPDVMSWSSLISACANAGQAERALEVLERMKTS-D 422

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
           CQP+  ++  ++      G   +AE +F+ ML++G  PN     SL+  Y K ++   V+
Sbjct: 423 CQPNVVSWCGLLKAYQKTGNWEKAEEIFHAMLDSGCPPNEVAWCSLLSAYEKGRQWKKVL 482

Query: 467 RALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
             + +L ELG+  D       ++ + +  + EL +
Sbjct: 483 YTIEKLEELGMKLDVVAWSTTISALAKAGQWELAE 517



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 146/305 (47%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +  + +    + A R F  + D+G+ PD +++S+LIS         +A+E  ERM 
Sbjct: 360 YNALLCAYERTAQWEDAMRTFIWIQDKGLTPDVMSWSSLISACANAGQAERALEVLERMK 419

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           +  C P+ +++  ++ AY + GN E A  ++    +     +  A+ +L+  Y     + 
Sbjct: 420 TSDCQPNVVSWCGLLKAYQKTGNWEKAEEIFHAMLDSGCPPNEVAWCSLLSAYEKGRQWK 479

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L   E+++ +G+K +++ ++  +  + +A +    +  +K+MT +G  PN  TY+SL+
Sbjct: 480 KVLYTIEKLEELGMKLDVVAWSTTISALAKAGQWELAEEKFKQMTKSGCLPNIVTYSSLI 539

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           +AYG     E   SV++ M   G++ +      LL         ++    FE M+     
Sbjct: 540 KAYGDVGLWEKAESVFKLMLRVGIRPNPQACCALLRAYGKGKELEKVIIFFESMEPQYGV 599

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD + ++++   C   G+   A    + M  AG  P+  + T+LI  Y    + D  ++
Sbjct: 600 EPDKYAYAAIFWACWTCGEWQRAVKYIDRMEMAGCTPDSVIYTTLINMYEANGQIDKAMQ 659

Query: 468 ALNRL 472
            L R+
Sbjct: 660 VLERM 664



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 110/241 (45%), Gaps = 1/241 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ +   +K ++K  + +KAE +F  MLD G  P+ V + +L+S         K +   E
Sbjct: 427 VVSWCGLLKAYQKTGNWEKAEEIFHAMLDSGCPPNEVAWCSLLSAYEKGRQWKKVLYTIE 486

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           ++   G   D + +S+ I A  +AG  E+A   + +        +   +S+LIK YG  G
Sbjct: 487 KLEELGMKLDVVAWSTTISALAKAGQWELAEEKFKQMTKSGCLPNIVTYSSLIKAYGDVG 546

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTY 343
            ++   +V++ M  +G++PN      LL   G+ K   +V   ++ M    G+ P+   Y
Sbjct: 547 LWEKAESVFKLMLRVGIRPNPQACCALLRAYGKGKELEKVIIFFESMEPQYGVEPDKYAY 606

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           A++  A       +  +     M+  G      +Y TL+ M    G  D+A ++ E M S
Sbjct: 607 AAIFWACWTCGEWQRAVKYIDRMEMAGCTPDSVIYTTLINMYEANGQIDKAMQVLERMGS 666

Query: 404 S 404
            
Sbjct: 667 G 667



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 1/214 (0%)

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           R+D  + + ++   G   N+     V+   ++ GV+PN      L+  +G  +R  Q   
Sbjct: 179 RVDVRSMNVVVWQLGQMQNWYAATKVFRAFRSAGVEPNAYVCTTLIAALGCGRRLSQALK 238

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +++ M   G+     T+ +L+ A GR   G+  + ++ EM++ G+      +  L++   
Sbjct: 239 LFRWMEKAGIERPIFTFNALMVACGRCASGDTAVELFEEMEKLGIVPDRITFTGLVSATT 298

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G  D A + F DM  +         +  M   C+   K  EA  +F  MLE G+E  L
Sbjct: 299 AAGLWDRA-QSFIDMMQARGFSIGLHEYIEMQWACARARKPREAYGLFQVMLEQGYELKL 357

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               +L+  Y +  + +D +R    + + G+TPD
Sbjct: 358 ESYNALLCAYERTAQWEDAMRTFIWIQDKGLTPD 391


>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
          Length = 1435

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 190/399 (47%), Gaps = 15/399 (3%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDT--------AALALTYFTNKLKASKEVILY 168
           DD   +L  + D  ++ D ++  N + N  +         AL L +   +     +VI Y
Sbjct: 238 DDARQLLDTMHDRGIDPD-LVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITY 296

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +    +  +L+ A  +F+DM+    +PD  T++ ++S         +A   F  +  
Sbjct: 297 NTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVE 356

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  PDA+TY+S++ A+ + GNV+      ++     ++ +   ++T+I +YG  G  D 
Sbjct: 357 KGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDL 416

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            + +Y+EM+A+G  P+ +TY  ++D++G+  R  +   + ++MTD GL P    +++L+ 
Sbjct: 417 AVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALIC 476

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           AY +     D  + +  M   G++     Y  +L + A  G T++   ++  M  ++N +
Sbjct: 477 AYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMM-NDNYR 535

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD   +  ++   +   K  E E +  +M E     NL ++++++    KA+      + 
Sbjct: 536 PDDDMYQVLLVALAKEDKCEEIEEVIQDM-ELLCRMNLGIISTMLI---KARCVSQGAKL 591

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECV 506
           L +    G  PD +    ++N    T K E G  L+EC+
Sbjct: 592 LKKACLQGYKPDIKSLRSIMNAYVMTEKHEEGLSLLECI 630



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 129/556 (23%), Positives = 228/556 (41%), Gaps = 51/556 (9%)

Query: 167  LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD----NVTFSTLISCARMNNLP------ 216
            ++N  +  + +    +KA  +FD+M+  G  P     N     LI   R++ L       
Sbjct: 782  IWNALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEEL 841

Query: 217  -------------------NKAVEWFERMPSF------GCDPDALTYSSMID---AYGRA 248
                                KA + FE M  +      G  P+   Y SMI     + R 
Sbjct: 842  QDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRF 901

Query: 249  GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
             +VE+     + A    ++ D    + L+ +Y  AGNFD    VY  +   G++P+  TY
Sbjct: 902  RDVELMIAEMEGA---GFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTY 958

Query: 309  NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
            N L+    R+ RP +  T+  EM   GL+P   +Y SLL A  +A   E    ++ EM+ 
Sbjct: 959  NTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRS 1018

Query: 369  KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            K  QL+ ++Y+ ++ +  + G   +A  +   MK  +  +P   T   ++T     G+  
Sbjct: 1019 KSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKE-DGIEPTIATMHILMTSYGTAGQPR 1077

Query: 429  EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
            EAE + N +  +  E +    +++   Y K    +     L  +   G+ PD +   C +
Sbjct: 1078 EAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTCFI 1137

Query: 489  NVMTQTPKEELGKLVECVEKSNSKLGY--VVKLLLEEQDIEGDFKKEATELFNSISKDVK 546
               +   +     L+    KS    G+   ++LL E             E   ++     
Sbjct: 1138 RAASLCEQTADAILLL---KSLQDCGFDLPIRLLTERTPSLLSEIANYLEELEALEDSAA 1194

Query: 547  KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR-SPTQWSLHLKSLSLGAALTA 605
              + N + DL         A ++ +L +   +Y D   R +   W    + LS GAAL  
Sbjct: 1195 LNFVNAVEDLLWAFECRATASRIFQLAVERSIYRDNVFRVAQKDWGADFRKLSAGAALVG 1254

Query: 606  LHIWINDLSKA-LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 664
            L +W++ +  A L+   E P  + + TG G  +Y+   L     ++L E+ +PF     +
Sbjct: 1255 LTLWLDHMQDASLQGSPESPKSVVLVTGEG--EYNMVSLRKTIRAYLLEMGSPFLPCRAR 1312

Query: 665  VGWFLTTEAAAKSWLE 680
             G F+  + + K WL+
Sbjct: 1313 SGRFVVKDYSLKMWLK 1328



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 104/210 (49%), Gaps = 2/210 (0%)

Query: 164  EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
            ++ + N  + ++    + D+  +++  +L+ G++PD  T++TLI     +  P +     
Sbjct: 919  DLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLL 978

Query: 224  ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
              M   G  P   +Y S++ A  +A   E A  +++  R++ ++++ + +  ++K+Y  A
Sbjct: 979  NEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNA 1038

Query: 284  GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            GN     N+   MK  G++P + T + L+ + G A +P + + +   +  + L  +   Y
Sbjct: 1039 GNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPY 1098

Query: 344  ASLLRAYGR-ARYGEDTLSVYREMKEKGMQ 372
            +++  AY +   Y   T  +  EMK  G++
Sbjct: 1099 STVFDAYLKNGDYNHGTTKLL-EMKRDGVE 1127


>gi|410110147|gb|AFV61153.1| pentatricopeptide repeat-containing protein 123, partial [Phyla
           nodiflora]
          Length = 419

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 161/324 (49%), Gaps = 9/324 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  + VF K +   +A  L  +M   GV P   ++STL++    N    +A+  F  M 
Sbjct: 67  YNAMINVFGKAKLFREARSLIXEMKTAGVMPXTTSYSTLLTMYVENXKFLEALSVFSEMR 126

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGN 285
              C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG A  
Sbjct: 127 EXKCLXDLXTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYGDAEL 184

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  TY++
Sbjct: 185 FGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYST 244

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++K   
Sbjct: 245 IISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELK--- 301

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +PD+    + I I +  G++ EA  +F + +++G   ++ V   +I    K ++  +V
Sbjct: 302 --RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDSGEVKDITVFERMIHLLSKYKKYMNV 359

Query: 466 VRALNRLPELGITPDDRFCGCLLN 489
           V   +++  LG  PD      +LN
Sbjct: 360 VEVFDKMRGLGYFPDSNVIAVVLN 383



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 137/286 (47%), Gaps = 1/286 (0%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V  D V  S LI  +R     +KA+  F R+   G  PD   Y++MI+ +G+A     A 
Sbjct: 25  VPGDLVLXSNLIELSRKLCDYSKAISIFSRLKXSGXXPDLXAYNAMINVFGKAKLFREAR 84

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L    +         ++STL+ +Y     F   L+V+ EM+      ++ T N ++D  
Sbjct: 85  SLIXEMKTAGVMPXTTSYSTLLTMYVENXKFLEALSVFSEMREXKCLXDLXTCNIMIDVY 144

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           G+     +   ++  M   G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V
Sbjct: 145 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 204

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YN+++ +       ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F 
Sbjct: 205 VTYNSMIMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 263

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           ++  +G E +  +  ++I  Y +A       R L+ L      P D
Sbjct: 264 KLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRD 309



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 113/236 (47%), Gaps = 4/236 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  + ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 188 AIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 247

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 248 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 303

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 304 DNIPRDTAIHILAGAGRIEEATYVFRQAIDSGEVKDITVFERMIHLLSKYKKYMNVVEVF 363

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
            +M   G  P+ N  A +L AYG+    +    +Y EM+E G   S  ++  +L++
Sbjct: 364 DKMRGLGYFPDSNVIAVVLNAYGKLHEFDKASDIYMEMQEVGCVFSDEVHFQMLSL 419



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 121/267 (45%), Gaps = 1/267 (0%)

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
            L + A+ W ++M       D +  S++I+   +  +   A  ++ R +      D  A+
Sbjct: 8   GLFDXALSWLQKMEXDXVPGDLVLXSNLIELSRKLCDYSKAISIFSRLKXSGXXPDLXAY 67

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           + +I ++G A  F    ++  EMK  GV P   +Y+ LL       +  +  +++ EM +
Sbjct: 68  NAMINVFGKAKLFREARSLIXEMKTAGVMPXTTSYSTLLTMYVENXKFLEALSVFSEMRE 127

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
                +  T   ++  YG+    ++   ++  M++ G++ +V  YNTLL +  D     E
Sbjct: 128 XKCLXDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 187

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A  +F  M+  +N + +  T++SMI I     +  +A  +  EM   G EPN    +++I
Sbjct: 188 AIHLFRLMQ-RKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTII 246

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPD 480
             +GK  + D       +L   G+  D
Sbjct: 247 SIWGKVGKLDRAAMLFQKLRSSGVEID 273



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 131/278 (47%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 138 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 197

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SMI  YG+    E A  L    ++    I+PN+  +ST+I ++G  G  
Sbjct: 198 KNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG--IEPNSITYSTIISIWGKVGKL 255

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    +++++++ GV+ + I +  ++    RA      K +  E+      P  +T   +
Sbjct: 256 DRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPR-DTAIHI 314

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 315 LAGAGRI---EEATYVFRQAIDSGEVKDITVFERMIHLLSKYKKYMNVVEVFDKMRGL-G 370

Query: 407 CQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 441
             PDS   + +  + +  GK+ E   A  ++ EM E G
Sbjct: 371 YFPDS---NVIAVVLNAYGKLHEFDKASDIYMEMQEVG 405


>gi|302817236|ref|XP_002990294.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
 gi|300141856|gb|EFJ08563.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
          Length = 1139

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 180/387 (46%), Gaps = 3/387 (0%)

Query: 94  SYDTRYNSLVKLAADLDSCSATED--DVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALA 151
           +Y  RY S V+ A       AT++  D+  V+         ++   +L        A   
Sbjct: 199 AYPMRYKSHVESAIATVRGLATQESYDIRRVMAPWVGRLTFRELCTVLKWQQGWKEAQEF 258

Query: 152 LTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
             +   +L     VI+Y++ +KV+ + + +  AE  F +MLD+ + PD V FST+I    
Sbjct: 259 FAWMKLQLSYIPSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTMILNYA 318

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
              + ++ +  +E M S G  P ++TY++M+    +A  +  A  L++    E   + P 
Sbjct: 319 NAEMFDEMLTMYEAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPL 378

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           A++ +I +Y   G F+  L V+E M   G  P+ + YN +L  +G+  R  +   ++  M
Sbjct: 379 AYALMITIYRKLGRFEEALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAM 438

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
               L  +  +YA++L    +A   E   S++ +M+ K   +   +Y +++++    G  
Sbjct: 439 QRQELCTSKYSYATMLHICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLY 498

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           DEA ++F++M +      D  TFS M  +    GK +EA  +  E+L  G   +     +
Sbjct: 499 DEAEKLFQEM-NELRLLVDVKTFSVMANVRLKAGKYNEAVQVMEELLAKGLNLDDMAWKT 557

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGIT 478
           L+ CY KA   +   +    L E GI 
Sbjct: 558 LLHCYVKAGNVERATKTFKTLVESGIA 584



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 139/298 (46%), Gaps = 2/298 (0%)

Query: 200 NVTFSTLISCARMNNLPNKAVEWFERMP-SFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
            +TF  L +  +      +A E+F  M       P  + YS ++  YGR   + +A   +
Sbjct: 236 RLTFRELCTVLKWQQGWKEAQEFFAWMKLQLSYIPSVIVYSMLLKVYGRDKQIGLAEAAF 295

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
               ++K   D  AFST+I  Y  A  FD  L +YE M + G+ P+ +TY  +L  + +A
Sbjct: 296 QEMLDQKLDPDEVAFSTMILNYANAEMFDEMLTMYEAMMSRGIVPSSVTYTTMLIHLNKA 355

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
           +R      +++++ +  +  +   YA ++  Y +    E+ L V+  M   G      +Y
Sbjct: 356 ERLADAALLWEDLVEESVELSPLAYALMITIYRKLGRFEEALEVFEAMLGAGYYPDSLIY 415

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           N +L M   +G  DEA ++F  M+  E C    +++++M+ IC    K   A ++F++M 
Sbjct: 416 NMVLHMLGKLGRYDEAVDVFTAMQRQELC-TSKYSYATMLHICEKADKFELAASIFSDMQ 474

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
                 +  V TS+I  YGKA   D+  +    + EL +  D +    + NV  +  K
Sbjct: 475 MKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGK 532



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 151/354 (42%), Gaps = 72/354 (20%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFST-LISCARMNNLPNKAVEW----------------- 222
            D+   +++ M+ RG+ P +VT++T LI   +   L + A+ W                 
Sbjct: 323 FDEMLTMYEAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYAL 382

Query: 223 -----------------FERMPSFGCDPDALTYSSMIDAYGRAG---------------- 249
                            FE M   G  PD+L Y+ ++   G+ G                
Sbjct: 383 MITIYRKLGRFEEALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQE 442

Query: 250 -------------------NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
                                E+A  ++   + ++  +D   ++++I +YG AG +D   
Sbjct: 443 LCTSKYSYATMLHICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAE 502

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            +++EM  + +  ++ T++ + +   +A +  +   + +E+   GL+ +   + +LL  Y
Sbjct: 503 KLFQEMNELRLLVDVKTFSVMANVRLKAGKYNEAVQVMEELLAKGLNLDDMAWKTLLHCY 562

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
            +A   E     ++ + E G+   +  YN +L++ A+    ++A  +F+ +KSS + QPD
Sbjct: 563 VKAGNVERATKTFKTLVESGIA-DLMAYNDVLSLYAEFDMLEDAKLLFQQLKSS-SIQPD 620

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              F +M+ +      V+ AE +  +M E GF P+      LI  YG+A R ++
Sbjct: 621 QVWFGTMVKLYCNANMVAAAEEVLRQMREKGFTPDHITQGILINAYGEANRIEE 674



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/337 (20%), Positives = 157/337 (46%), Gaps = 9/337 (2%)

Query: 181 LDKAERLFD------DMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           L+KAERL D      D+++  V+   + ++ +I+  R      +A+E FE M   G  PD
Sbjct: 352 LNKAERLADAALLWEDLVEESVELSPLAYALMITIYRKLGRFEEALEVFEAMLGAGYYPD 411

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
           +L Y+ ++   G+ G  + A  ++   + ++      +++T++ +   A  F+   +++ 
Sbjct: 412 SLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSYATMLHICEKADKFELAASIFS 471

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           +M+      + + Y +++   G+A    + + +++EM +  L  +  T++ +     +A 
Sbjct: 472 DMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAG 531

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
              + + V  E+  KG+ L    + TLL      G  + A + F+ +   E+   D   +
Sbjct: 532 KYNEAVQVMEELLAKGLNLDDMAWKTLLHCYVKAGNVERATKTFKTL--VESGIADLMAY 589

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + ++++ +    + +A+ +F ++  +  +P+     ++++ Y  A         L ++ E
Sbjct: 590 NDVLSLYAEFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVLRQMRE 649

Query: 475 LGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 510
            G TPD    G L+N   +  + EE   L+E   K +
Sbjct: 650 KGFTPDHITQGILINAYGEANRIEEAAGLLEASAKED 686



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 167/397 (42%), Gaps = 22/397 (5%)

Query: 168  YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
            YN     F K   +  AE L   M D+G   ++ T   LI+                 +P
Sbjct: 726  YNQLTINFLKAGQVLPAEMLHSRMQDKGFDVEDSTLGHLIAAYGKAGRYEVLTRLKPELP 785

Query: 228  SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN-- 285
                  +   YSSM+ A      +E A GL ++ R    + D    S L+  Y  AG   
Sbjct: 786  R-----NNFVYSSMVGALINCNQLEEAAGLVEKMRQIGLKCDSVLVSILLNAYSKAGEQK 840

Query: 286  -FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             F      Y          +++ YN ++    R  R  +    Y  +T+ GL P+  TY 
Sbjct: 841  IFSFSGRWYPAGYCCLQHDHIVAYNTIIKADLRPGRLKKAIDTYSSLTNLGLRPSLQTYD 900

Query: 345  SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            +++  + ++    D   +++++K  G Q    +Y+ ++   A  G  + A ++FE MK  
Sbjct: 901  TMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMK-L 959

Query: 405  ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               +P   +++++I   +  G+ ++AE +  EM +AG  P+      LI  Y    + ++
Sbjct: 960  RGLRPHEVSYNNLIDAYARAGQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNE 1019

Query: 465  VVRALNRLPELGITPDDRFCGCLLNVMTQT--PKEELGKLVECVEKSNSKLGYV-----V 517
               AL R+    I P  R    ++   ++   P++ +   ++ +E+S  +   V     +
Sbjct: 1020 AENALERMQTAAIRPTVRHYNEVMLAFSRARLPRQAMESYLK-MERSGIQPDVVSSRTMI 1078

Query: 518  KLLLEEQDIEGDF----KKEATELFNSISKD-VKKAY 549
            ++LLE    E       K EA  + +S+S++ V K Y
Sbjct: 1079 RILLEGSMFEEGLSLYKKTEAKLVSDSLSREMVAKLY 1115



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 119/279 (42%), Gaps = 2/279 (0%)

Query: 164  EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
             ++ YN  +K   +   L KA   +  + + G++P   T+ T+IS    +     A + F
Sbjct: 860  HIVAYNTIIKADLRPGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMF 919

Query: 224  ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            + + S G  PD   YS M++ Y ++G  E A  L++  +    R    +++ LI  Y  A
Sbjct: 920  KDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARA 979

Query: 284  GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            G F     +  EM   G  P+ +T+  L+       +  + +   + M    + P    Y
Sbjct: 980  GQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERMQTAAIRPTVRHY 1039

Query: 344  ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
              ++ A+ RAR     +  Y +M+  G+Q  V    T++ +  +    +E   +++  K+
Sbjct: 1040 NEVMLAFSRARLPRQAMESYLKMERSGIQPDVVSSRTMIRILLEGSMFEEGLSLYK--KT 1097

Query: 404  SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
                  DS +   +  +    GK  EA+ +  +   A F
Sbjct: 1098 EAKLVSDSLSREMVAKLYQGAGKHFEAKYILRQTSGACF 1136



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 147/362 (40%), Gaps = 43/362 (11%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + ++ +   L+ A+ LF  +    ++PD V F T++      N+   A E  
Sbjct: 585 DLMAYNDVLSLYAEFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVL 644

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M   G  PD +T   +I+AYG A  +E A GL + +  E    D +  + + ++Y   
Sbjct: 645 RQMREKGFTPDHITQGILINAYGEANRIEEAAGLLEASAKE----DESEAAAISRIYLCL 700

Query: 284 GN--FD-GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
               FD   L ++  +++  +  +   YN L     +A +    + ++  M D G     
Sbjct: 701 KFRLFDKATLLLHRVLESFTL--DSAAYNQLTINFLKAGQVLPAEMLHSRMQDKGFDVED 758

Query: 341 NTYASLLRAYGRA-RYG-----------------------------EDTLSVYREMKEKG 370
           +T   L+ AYG+A RY                              E+   +  +M++ G
Sbjct: 759 STLGHLIAAYGKAGRYEVLTRLKPELPRNNFVYSSMVGALINCNQLEEAAGLVEKMRQIG 818

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC--QPDSWTFSSMITICSCR-GKV 427
           ++    L + LL   +  G   + F        +  C  Q D     + I     R G++
Sbjct: 819 LKCDSVLVSILLNAYSKAG-EQKIFSFSGRWYPAGYCCLQHDHIVAYNTIIKADLRPGRL 877

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
            +A   ++ +   G  P+L    ++I  + K+ RT D  +    L   G  PD++    +
Sbjct: 878 KKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQM 937

Query: 488 LN 489
           +N
Sbjct: 938 MN 939


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 168/332 (50%), Gaps = 6/332 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           + ++  Y++ +    K + +DKAER+ + M++ G +P+++T+++LI    ++ + N++V 
Sbjct: 201 APDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVR 260

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F++M S G  P     +S I A  + G    A  ++D    +  + D  ++ST++  Y 
Sbjct: 261 VFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYA 320

Query: 282 TAGNFDGCL----NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           TA   D CL    N++  M   G+ PN   +N L++   R     +   I+++M + G+ 
Sbjct: 321 TAT--DSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMI 378

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P+  T+A+++ +  R    +D L  +  M + G+  S  +Y  L+  C + G   +A E+
Sbjct: 379 PDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKEL 438

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
             +M + +   P    FSS+I      G+V+E + + + M++ G  PN+    SL++ Y 
Sbjct: 439 ISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYC 498

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
                ++    L+ +  +GI P+    G L++
Sbjct: 499 LVGNMEEAFALLDAMASIGIEPNCYIYGTLVD 530



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 149/341 (43%), Gaps = 45/341 (13%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMN 213
            T  +  +K V  +N+ +  + +C  +DKA  +F+DM ++G+ PD VTF+T+IS   R+ 
Sbjct: 338 LTKGIAPNKHV--FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIG 395

Query: 214 NLPNKAVEWFERMPSFGCDPDALTY----------------------------------- 238
            L + A+  F  M   G  P    Y                                   
Sbjct: 396 RL-DDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKY 454

Query: 239 -SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
            SS+I+   + G V     + D       R +   F++L++ Y   GN +    + + M 
Sbjct: 455 FSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMA 514

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
           +IG++PN   Y  L+D   +  R     T++++M   G+ P    Y+ +L    +AR   
Sbjct: 515 SIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTT 574

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
               ++ EM E G  +S+  Y  +L        TDEA  + E +  + N + D  TF+ +
Sbjct: 575 AAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKL-FAMNVKFDIITFNIV 633

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNL----FVLTSLIQ 454
           I+     G+  EA+ +F+ +   G  PN+     ++T+LI+
Sbjct: 634 ISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIK 674



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 134/292 (45%), Gaps = 10/292 (3%)

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           R   P   T++ LI C R  + P+  +    R+   G  PD  +Y S+I  + + G V+ 
Sbjct: 94  RHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDK 152

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  L+     +         +++IK        D   ++ ++M   G+ P++ TY+ ++D
Sbjct: 153 AHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIID 212

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
            + ++K   + + + ++M + G  PN  TY SL+  Y  +    +++ V+++M   G+  
Sbjct: 213 GLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIP 272

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-----TICSCRGKVS 428
           +V   N+ +      G T+EA  IF+ M   +  +PD  ++S+M+        SC   ++
Sbjct: 273 TVDNCNSFIHALFKHGRTNEAKCIFDSM-VLKGPKPDIISYSTMLHGYATATDSC---LA 328

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +   +FN ML  G  PN  V   LI  Y +    D  +     +   G+ PD
Sbjct: 329 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPD 380



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 142/327 (43%), Gaps = 12/327 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ +  +R+    D    +   +L  G+ PD+ ++S +    +   + +KA   F  M 
Sbjct: 103 YNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYGFVKDGEV-DKAHCLFLEMM 161

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P  L  +S+I    +   ++ A  +  +  +     D   +S +I     +   D
Sbjct: 162 EQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMD 221

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP---NWNTYA 344
               V E+M   G +PN ITYN+L+     +    +   ++K+M+  G+ P   N N++ 
Sbjct: 222 KAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFI 281

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL---AMCADVGYTDEAFEIFEDM 401
             L  +GR     +   ++  M  KG +  +  Y+T+L   A   D    D    IF ++
Sbjct: 282 HALFKHGRT---NEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLAD-VHNIF-NL 336

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             ++   P+   F+ +I   +  G + +A  +F +M   G  P+     ++I    +  R
Sbjct: 337 MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGR 396

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLL 488
            DD +   N + ++G+ P +   GCL+
Sbjct: 397 LDDALHKFNHMVDIGVPPSEAVYGCLI 423



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 130/273 (47%), Gaps = 10/273 (3%)

Query: 224 ERMPSFGCD----PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS-TLIK 278
           +RM  + C     P   TY+ +ID Y R    ++   +  R    K  + P+ FS +LI 
Sbjct: 85  QRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLL--KNGLGPDDFSYSLIY 142

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            +   G  D    ++ EM   GV P ++  N+++  + + K   + ++I ++M D+G++P
Sbjct: 143 GFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAP 202

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  TY+ ++    +++  +    V  +M E G + +   YN+L+   +  G  +E+  +F
Sbjct: 203 DLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVF 262

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           + M SS    P     +S I      G+ +EA+ +F+ M+  G +P++   ++++  Y  
Sbjct: 263 KQM-SSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYAT 321

Query: 459 AQRT--DDVVRALNRLPELGITPDDRFCGCLLN 489
           A  +   DV    N +   GI P+      L+N
Sbjct: 322 ATDSCLADVHNIFNLMLTKGIAPNKHVFNILIN 354



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 8/192 (4%)

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE--DTL 360
           P + TYN L+D   R  RP     I   +  NGL P+  +Y+ +   YG  + GE     
Sbjct: 98  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLI---YGFVKDGEVDKAH 154

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-T 419
            ++ EM E+G+   + + N+++     +   D+A  I + M  S    PD +T+S +I  
Sbjct: 155 CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS-GIAPDLFTYSLIIDG 213

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           +C  +  + +AE +  +M+EAG  PN     SLI  Y  +   ++ VR   ++   G+ P
Sbjct: 214 LCKSKA-MDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIP 272

Query: 480 DDRFCGCLLNVM 491
               C   ++ +
Sbjct: 273 TVDNCNSFIHAL 284


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 168/332 (50%), Gaps = 6/332 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           + ++  Y++ +    K + +DKAER+ + M++ G +P+++T+++LI    ++ + N++V 
Sbjct: 277 APDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVR 336

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F++M S G  P     +S I A  + G    A  ++D    +  + D  ++ST++  Y 
Sbjct: 337 VFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYA 396

Query: 282 TAGNFDGCL----NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           TA   D CL    N++  M   G+ PN   +N L++   R     +   I+++M + G+ 
Sbjct: 397 TAT--DSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMI 454

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P+  T+A+++ +  R    +D L  +  M + G+  S  +Y  L+  C + G   +A E+
Sbjct: 455 PDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKEL 514

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
             +M + +   P    FSS+I      G+V+E + + + M++ G  PN+    SL++ Y 
Sbjct: 515 ISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYC 574

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
                ++    L+ +  +GI P+    G L++
Sbjct: 575 LVGNMEEAFALLDAMASIGIEPNCYIYGTLVD 606



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 147/283 (51%), Gaps = 5/283 (1%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDP 233
           F K  ++DKA  LF +M+++GV P  +  +++I    +M  + +KA    ++M   G  P
Sbjct: 220 FVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEM-DKAESIVQKMVDSGIAP 278

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           D  TYS +ID   ++  ++ A  + ++      R +   +++LI  Y  +G ++  + V+
Sbjct: 279 DLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVF 338

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
           ++M + GV P +   N+ +  + +  R  + K I+  M   G  P+  +Y+++L  Y  A
Sbjct: 339 KQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATA 398

Query: 354 RYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
                 D  +++  M  KG+  +  ++N L+   A  G  D+A  IFEDM+ ++   PD+
Sbjct: 399 TDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQ-NKGMIPDT 457

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            TF+++I+     G++ +A   FN M++ G  P+  V   LIQ
Sbjct: 458 VTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQ 500



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 149/341 (43%), Gaps = 45/341 (13%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMN 213
            T  +  +K V  +N+ +  + +C  +DKA  +F+DM ++G+ PD VTF+T+IS   R+ 
Sbjct: 414 LTKGIAPNKHV--FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIG 471

Query: 214 NLPNKAVEWFERMPSFGCDPDALTY----------------------------------- 238
            L + A+  F  M   G  P    Y                                   
Sbjct: 472 RL-DDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKY 530

Query: 239 -SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
            SS+I+   + G V     + D       R +   F++L++ Y   GN +    + + M 
Sbjct: 531 FSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMA 590

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
           +IG++PN   Y  L+D   +  R     T++++M   G+ P    Y+ +L    +AR   
Sbjct: 591 SIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTT 650

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
               ++ EM E G  +S+  Y  +L        TDEA  + E +  + N + D  TF+ +
Sbjct: 651 AAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKL-FAMNVKFDIITFNIV 709

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNL----FVLTSLIQ 454
           I+     G+  EA+ +F+ +   G  PN+     ++T+LI+
Sbjct: 710 ISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIK 750



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 137/287 (47%), Gaps = 10/287 (3%)

Query: 210 ARMNNLPNKAVEWFERMPSFGCD----PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           A   + P  A+E F+RM  + C     P   TY+ +ID Y R    ++   +  R    K
Sbjct: 147 AACGDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLL--K 204

Query: 266 WRIDPNAFS-TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
             + P+ FS +LI  +   G  D    ++ EM   GV P ++  N+++  + + K   + 
Sbjct: 205 NGLGPDDFSYSLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKA 264

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
           ++I ++M D+G++P+  TY+ ++    +++  +    V  +M E G + +   YN+L+  
Sbjct: 265 ESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHG 324

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
            +  G  +E+  +F+ M SS    P     +S I      G+ +EA+ +F+ M+  G +P
Sbjct: 325 YSISGMWNESVRVFKQM-SSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKP 383

Query: 445 NLFVLTSLIQCYGKAQRT--DDVVRALNRLPELGITPDDRFCGCLLN 489
           ++   ++++  Y  A  +   DV    N +   GI P+      L+N
Sbjct: 384 DIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILIN 430



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 134/292 (45%), Gaps = 10/292 (3%)

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           R   P   T++ LI C R  + P+  +    R+   G  PD  +Y S+I  + + G V+ 
Sbjct: 170 RHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDK 228

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  L+     +         +++IK        D   ++ ++M   G+ P++ TY+ ++D
Sbjct: 229 AHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIID 288

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
            + ++K   + + + ++M + G  PN  TY SL+  Y  +    +++ V+++M   G+  
Sbjct: 289 GLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIP 348

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-----TICSCRGKVS 428
           +V   N+ +      G T+EA  IF+ M   +  +PD  ++S+M+        SC   ++
Sbjct: 349 TVDNCNSFIHALFKHGRTNEAKCIFDSM-VLKGPKPDIISYSTMLHGYATATDSC---LA 404

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +   +FN ML  G  PN  V   LI  Y +    D  +     +   G+ PD
Sbjct: 405 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPD 456



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 8/204 (3%)

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE--DTL 360
           P + TYN L+D   R  RP     I   +  NGL P+  +Y+ +   YG  + GE     
Sbjct: 174 PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLI---YGFVKDGEVDKAH 230

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-T 419
            ++ EM E+G+   + + N+++     +   D+A  I + M  S    PD +T+S +I  
Sbjct: 231 CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS-GIAPDLFTYSLIIDG 289

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           +C  +  + +AE +  +M+EAG  PN     SLI  Y  +   ++ VR   ++   G+ P
Sbjct: 290 LCKSKA-MDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIP 348

Query: 480 DDRFCGCLLNVMTQTPKEELGKLV 503
               C   ++ + +  +    K +
Sbjct: 349 TVDNCNSFIHALFKHGRTNEAKCI 372


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 169/369 (45%), Gaps = 54/369 (14%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  V  + V MK F    ++D A  L  DM   G  P+++ +  LI     NN  N+A++
Sbjct: 197 SPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMK 256

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR--------------------- 260
             E M   GC+PD  T++ +I    +AG +  A  L+DR                     
Sbjct: 257 LLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLC 316

Query: 261 -------ARNEKWRI-DPNA--FSTLIKLYGTAGNFDGCLNV-YEEMKAIGVKPNMITYN 309
                  AR    +I +PN   ++TLI  Y  +G F+   ++ Y+ M   G +P+  T+N
Sbjct: 317 RMGKVDEARAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFN 376

Query: 310 NLLDTMGRAKRPWQVKTI--YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
            ++D  G  K+ + V  +    EM   G  PN  TY  L+  + +  + E+   V   M 
Sbjct: 377 IMID--GLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMS 434

Query: 368 EKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
            KG+ L+   YN L+ A+C D G   +A +++ +M SS+ C+PD +TF+S+I       K
Sbjct: 435 AKGLSLNTVGYNCLIGALCKD-GKIQDALQMYGEM-SSKGCKPDIYTFNSLIYGLCKNDK 492

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK---AQRTDDVVRALNRLPELGITPDDRF 483
           + EA  ++ +ML  G   N     +LI  + +    Q+ D +V  +            RF
Sbjct: 493 MEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEM------------RF 540

Query: 484 CGCLLNVMT 492
            GC L+ +T
Sbjct: 541 RGCPLDNIT 549



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 146/316 (46%), Gaps = 2/316 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKA-ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +LYN  +  +      ++A + L+ +M+  G +PD  TF+ +I           A+E+ +
Sbjct: 337 VLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLD 396

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G +P+ +TY+ +ID + + G+ E A  + +    +   ++   ++ LI      G
Sbjct: 397 EMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDG 456

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                L +Y EM + G KP++ T+N+L+  + +  +  +   +Y++M   G+  N  TY 
Sbjct: 457 KIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYN 516

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+ A+ R    +    +  EM+ +G  L    YN L+      G T++   + E M   
Sbjct: 517 TLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQM-FG 575

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           E   P   + + +I      GKV++A     +M++ G  P++    SLI    K  R  +
Sbjct: 576 EEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQE 635

Query: 465 VVRALNRLPELGITPD 480
            +   N L   GI PD
Sbjct: 636 ALNLFNGLQAKGIHPD 651



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 120/252 (47%), Gaps = 3/252 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +    K   +  A +++ +M  +G KPD  TF++LI     N+   +A+  +  M 
Sbjct: 445 YNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDML 504

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G   + +TY+++I A+ R   ++ A  L    R     +D   ++ LIK     G  +
Sbjct: 505 LEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATE 564

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
            CL + E+M    + P++ + N L+++  R  +        ++M   GL+P+  TY SL+
Sbjct: 565 KCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLI 624

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSEN 406
               +    ++ L+++  ++ KG+      YNTL++  C +  + D    +F+ +  S  
Sbjct: 625 NGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGV--SNG 682

Query: 407 CQPDSWTFSSMI 418
             P+  T+S +I
Sbjct: 683 FIPNEITWSILI 694



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 106/238 (44%), Gaps = 2/238 (0%)

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            Y  +ID  G  G  +M   L  + ++E      + F  +++ YG AG       +  +M
Sbjct: 96  VYYLLIDKLGNVGEFKMIDKLLKQMKDEGCVFKESLFILIMRYYGKAGLPGQATRLLLDM 155

Query: 297 KAI-GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
             +   +P   +YN +L+ +     P     ++ +M   G+SP   T+  +++A+     
Sbjct: 156 WGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNE 215

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            +   S+ R+M + G   +  +Y  L+   ++    +EA ++ E+M     C+PD  TF+
Sbjct: 216 VDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEM-FLMGCEPDVQTFN 274

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
            +I      G++ EA  + + ML   F  +  +   L+    +  + D+    L+++P
Sbjct: 275 DVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIP 332



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 35/183 (19%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI------------------ 207
           + YN  +  F +   + +A++L  +M  RG   DN+T++ LI                  
Sbjct: 513 VTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQ 572

Query: 208 -----------SCARMNN------LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
                      SC  + N        N A+++   M   G  PD +TY+S+I+   + G 
Sbjct: 573 MFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGR 632

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
            + A  L++  + +    D   ++TLI  Y   G F+    +  +  + G  PN IT++ 
Sbjct: 633 FQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSI 692

Query: 311 LLD 313
           L++
Sbjct: 693 LIN 695



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 7/154 (4%)

Query: 96  DTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLE--QDCVIILNNMTNPDTAALALT 153
           +  YN L+K    L    ATE  +  + +  G++       C I++N+         AL 
Sbjct: 547 NITYNGLIK---ALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQ 603

Query: 154 YFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
           +  + ++   + +++ YN  +    K     +A  LF+ +  +G+ PD VT++TLIS   
Sbjct: 604 FLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYC 663

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
              L N A +   +  S G  P+ +T+S +I+ +
Sbjct: 664 YEGLFNDACQLLFKGVSNGFIPNEITWSILINYF 697


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 165/326 (50%), Gaps = 6/326 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +    K + +DKAER+ + M++ G +P+++T+++LI    ++ + N++V  F++M 
Sbjct: 121 YSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMS 180

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S G  P     +S I A  + G    A  ++D    +  + D  ++ST++  Y TA   D
Sbjct: 181 SCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATAT--D 238

Query: 288 GCL----NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            CL    N++  M   G+ PN   +N L++   R     +   I+++M + G+ P+  T+
Sbjct: 239 SCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTF 298

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           A+++ +  R    +D L  +  M + G+  S  +Y  L+  C + G   +A E+  +M +
Sbjct: 299 ATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMN 358

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +   P    FSS+I      G+V+E + + + M++ G  PN+    SL++ Y      +
Sbjct: 359 KDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNME 418

Query: 464 DVVRALNRLPELGITPDDRFCGCLLN 489
           +    L+ +  +GI P+    G L++
Sbjct: 419 EAFALLDAMASIGIEPNCYIYGTLVD 444



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 145/329 (44%), Gaps = 43/329 (13%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFER 225
           ++N+ +  + +C  +DKA  +F+DM ++G+ PD VTF+T+IS   R+  L + A+  F  
Sbjct: 262 VFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRL-DDALHKFNH 320

Query: 226 MPSFGCDPDALTY------------------------------------SSMIDAYGRAG 249
           M   G  P    Y                                    SS+I+   + G
Sbjct: 321 MVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEG 380

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
            V     + D       R +   F++L++ Y   GN +    + + M +IG++PN   Y 
Sbjct: 381 RVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYG 440

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            L+D   +  R     T++++M   G+ P    Y+ +L    +AR       ++ EM E 
Sbjct: 441 TLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIES 500

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G  +S+  Y  +L        TDEA  + E +  + N + D  TF+ +I+     G+  E
Sbjct: 501 GTTVSIHTYGVVLGGLCRNNCTDEANMLLEKL-FAMNVKFDIITFNIVISAMFKVGRRQE 559

Query: 430 AEAMFNEMLEAGFEPNL----FVLTSLIQ 454
           A+ +F+ +   G  PN+     ++T+LI+
Sbjct: 560 AKELFDAISTYGLVPNIQTYSMMITNLIK 588



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 134/292 (45%), Gaps = 10/292 (3%)

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           R   P   T++ LI C R  + P+  +    R+   G  PD  +Y S+I  + + G V+ 
Sbjct: 8   RHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDK 66

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  L+     +         +++IK        D   ++ ++M   G+ P++ TY+ ++D
Sbjct: 67  AHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIID 126

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
            + ++K   + + + ++M + G  PN  TY SL+  Y  +    +++ V+++M   G+  
Sbjct: 127 GLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIP 186

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-----TICSCRGKVS 428
           +V   N+ +      G T+EA  IF+ M   +  +PD  ++S+M+        SC   ++
Sbjct: 187 TVDNCNSFIHALFKHGRTNEAKCIFDSM-VLKGPKPDIISYSTMLHGYATATDSC---LA 242

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +   +FN ML  G  PN  V   LI  Y +    D  +     +   G+ PD
Sbjct: 243 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPD 294



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 142/327 (43%), Gaps = 12/327 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ +  +R+    D    +   +L  G+ PD+ ++S +    +   + +KA   F  M 
Sbjct: 17  YNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYGFVKDGEV-DKAHCLFLEMM 75

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P  L  +S+I    +   ++ A  +  +  +     D   +S +I     +   D
Sbjct: 76  EQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMD 135

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP---NWNTYA 344
               V E+M   G +PN ITYN+L+     +    +   ++K+M+  G+ P   N N++ 
Sbjct: 136 KAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFI 195

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL---AMCADVGYTDEAFEIFEDM 401
             L  +GR    +    ++  M  KG +  +  Y+T+L   A   D    D    IF ++
Sbjct: 196 HALFKHGRTNEAK---CIFDSMVLKGPKPDIISYSTMLHGYATATDSCLAD-VHNIF-NL 250

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             ++   P+   F+ +I   +  G + +A  +F +M   G  P+     ++I    +  R
Sbjct: 251 MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGR 310

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLL 488
            DD +   N + ++G+ P +   GCL+
Sbjct: 311 LDDALHKFNHMVDIGVPPSEAVYGCLI 337



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 125/260 (48%), Gaps = 6/260 (2%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS-TLIKLYGTAGNFDGCLN 291
           P   TY+ +ID Y R    ++   +  R    K  + P+ FS +LI  +   G  D    
Sbjct: 12  PTIHTYNILIDCYRRVHRPDLGLAIVGRLL--KNGLGPDDFSYSLIYGFVKDGEVDKAHC 69

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           ++ EM   GV P ++  N+++  + + K   + ++I ++M D+G++P+  TY+ ++    
Sbjct: 70  LFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLC 129

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           +++  +    V  +M E G + +   YN+L+   +  G  +E+  +F+ M SS    P  
Sbjct: 130 KSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQM-SSCGVIPTV 188

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT--DDVVRAL 469
              +S I      G+ +EA+ +F+ M+  G +P++   ++++  Y  A  +   DV    
Sbjct: 189 DNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIF 248

Query: 470 NRLPELGITPDDRFCGCLLN 489
           N +   GI P+      L+N
Sbjct: 249 NLMLTKGIAPNKHVFNILIN 268



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 8/192 (4%)

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE--DTL 360
           P + TYN L+D   R  RP     I   +  NGL P+  +Y+ +   YG  + GE     
Sbjct: 12  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLI---YGFVKDGEVDKAH 68

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-T 419
            ++ EM E+G+   + + N+++     +   D+A  I + M  S    PD +T+S +I  
Sbjct: 69  CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS-GIAPDLFTYSLIIDG 127

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           +C  +  + +AE +  +M+EAG  PN     SLI  Y  +   ++ VR   ++   G+ P
Sbjct: 128 LCKSKA-MDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIP 186

Query: 480 DDRFCGCLLNVM 491
               C   ++ +
Sbjct: 187 TVDNCNSFIHAL 198


>gi|218194011|gb|EEC76438.1| hypothetical protein OsI_14128 [Oryza sativa Indica Group]
          Length = 669

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 117/505 (23%), Positives = 222/505 (43%), Gaps = 17/505 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +  F    +L +   LF +M   G  PD   +  L+          +AV    +M 
Sbjct: 90  YRHIVDAFAGAGNLSRVAELFAEMAATGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQ 149

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGN 285
           + GC P A TY  ++D YGR G  +   G+ +  R  +  + P+   ++ L +++G  G 
Sbjct: 150 ADGCPPTAATYRVLLDLYGRQGRFD---GVRELFREMRTTVPPDTATYNVLFRVFGDGGF 206

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F   + ++++M    V+P++ T  N++   GR       + +   +T  G+ P    Y  
Sbjct: 207 FKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTG 266

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ A G A   E+    +  M E G   ++  YN L    A  G   EA  IF  M ++ 
Sbjct: 267 LVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNA 326

Query: 406 NCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
             Q D  +F ++I    C+G ++ +A   + EM ++ F P+   L  ++  Y  A   D+
Sbjct: 327 AIQKDKDSFDALIE-AYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDE 385

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE--KSNSKLGYVVKLLL 521
                  L  +   P       +L++  +  +  +   L+E ++  +++S    +  ++ 
Sbjct: 386 SKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASMIK 445

Query: 522 EEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVY 579
            E D + +++     L NS  +  D    + N L+D+         A ++L+  L   ++
Sbjct: 446 GEYDDDSNWQMVEYVLDNSNLEGCDYSLRFFNALLDVLWWFGQKGRAARVLDQALKYGLF 505

Query: 580 TDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYS 639
            ++   +   WS  +  +S+G +L A+ +W+N L   L+  E+ P L  +    G+ + S
Sbjct: 506 PELFRDTKLVWSADVHRMSVGGSLVAVSVWLNKLYDRLKGDEDLPQLASVVVLRGQMEKS 565

Query: 640 --DKGL--ASVFESHLKE-LNAPFH 659
              +GL  A V  S L + L++ FH
Sbjct: 566 TVTRGLPIAKVVYSFLNDTLSSSFH 590



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 82/202 (40%), Gaps = 9/202 (4%)

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPW----QVKTIYKEMTDN---GLSPNWNTYASLLR 348
           MKA GV P   TYN +L    RA  P      +  ++ EM  +    + P+  TY +LL 
Sbjct: 1   MKASGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVRPDLTTYNTLLA 60

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A       + +  + R M E G+      Y  ++   A  G      E+F +M ++ +  
Sbjct: 61  AAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMAATGHT- 119

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD   +  ++   +  G  +EA A+  +M   G  P       L+  YG+  R D  VR 
Sbjct: 120 PDPSAYLGLMEAHTRVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDG-VRE 178

Query: 469 LNRLPELGITPDDRFCGCLLNV 490
           L R     + PD      L  V
Sbjct: 179 LFREMRTTVPPDTATYNVLFRV 200


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 158/352 (44%), Gaps = 36/352 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           E I YN  +  F +  D+++A R+ D+M+  G++ + + ++TL++         KA+E  
Sbjct: 319 EPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIM 378

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR---------------- 267
           + M   G +PD+ TYS +I+ + R  N+  AF L D  +  K                  
Sbjct: 379 QEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRC 438

Query: 268 -----------------IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
                            + PNA  ++TL+  +   G  +    + E M+  G+ P++  Y
Sbjct: 439 GNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCY 498

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N+L+    +AKR  + +T   EM +  L PN +TY + +  Y +A   E     + EM  
Sbjct: 499 NSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLS 558

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G+  +V +Y  L+      G   EAF +F  + S    Q D  T+S +I   S  GK+ 
Sbjct: 559 CGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQ-DVQTYSVLIHGLSRNGKMH 617

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           EA  +F+E+ E G  PN F   SLI    K    D   + L  +   GI PD
Sbjct: 618 EAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPD 669



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 152/320 (47%), Gaps = 3/320 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  ++ YNV +    + R LD+A  L   M+D+G+ PD  T+  LI+   M     +A  
Sbjct: 247 SPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKL 306

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
               M   G  P+ +TY+++ID + R G++E AF + D         +   ++TL+    
Sbjct: 307 MLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVC 366

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AG  +  L + +EM   GV+P+  TY+ L++   R +   +   +  EM    L+P   
Sbjct: 367 KAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVL 426

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY+ ++    R    + T ++ REM   G++ +  +Y TL+   A  G  +E+  I E M
Sbjct: 427 TYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERM 486

Query: 402 KSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           +  +   PD + ++S+I I  C+ K + EA     EMLE    PN     + I  Y KA 
Sbjct: 487 R-EQGILPDVFCYNSLI-IGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAG 544

Query: 461 RTDDVVRALNRLPELGITPD 480
             +   R  N +   G+ P+
Sbjct: 545 EMEIADRYFNEMLSCGVLPN 564



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 153/341 (44%), Gaps = 1/341 (0%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K K +  V+ Y+V +    +C +L     +  +M+  G+KP+ V ++TL++         
Sbjct: 418 KRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVE 477

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           ++    ERM   G  PD   Y+S+I  + +A  +E A          + R + + +   I
Sbjct: 478 ESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFI 537

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             Y  AG  +     + EM + GV PN+  Y  L++   +     +  ++++ +    + 
Sbjct: 538 DGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVL 597

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
            +  TY+ L+    R     +   ++ E++EKG+  +   YN+L++     G  D+A ++
Sbjct: 598 QDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQL 657

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            E+M   +   PD  T++ +I      G++  A+ +F+++   G  PN     +++  Y 
Sbjct: 658 LEEM-CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYC 716

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
           K++      + L  +   G+ PD      +LN   +  K E
Sbjct: 717 KSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFE 757



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 159/341 (46%), Gaps = 1/341 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K   +V  Y   +    K  ++  A+R+  +M ++G  P+ VT++ +I       L ++A
Sbjct: 210 KVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEA 269

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           +E    M   G  PD  TY  +I+ +        A  +     +   + +P  ++ LI  
Sbjct: 270 IELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDG 329

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +   G+ +    + +EM A G++ N+I +N LL+ + +A +  +   I +EM + G+ P+
Sbjct: 330 FMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPD 389

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY+ L+  + R +       +  EMK++ +  +V  Y+ ++      G       I  
Sbjct: 390 SQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILR 449

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +M  +   +P++  +++++T  +  G+V E+  +   M E G  P++F   SLI  + KA
Sbjct: 450 EMVMN-GLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKA 508

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
           +R ++    L  + E  + P+    G  ++  ++  + E+ 
Sbjct: 509 KRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIA 549



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 162/364 (44%), Gaps = 35/364 (9%)

Query: 147 TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           T A ++  F    +  ++V  Y+V +    +   + +A  +F ++ ++G+ P+  T+++L
Sbjct: 582 TEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSL 641

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
           IS +      +KA +  E M   G +PD +TY+ +ID   +AG +E A  L+D       
Sbjct: 642 ISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGL 701

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             +   ++ ++  Y  + N      + EEM   GV P+   YN +L+   + ++  +   
Sbjct: 702 TPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALD 761

Query: 327 IYKEMTDNGLS----------------------------------PNWNTYASLLRAYGR 352
           +++EM + G +                                  PN  TY SL+    +
Sbjct: 762 LFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCK 821

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
           A    +   ++ EM+E+ +  +   Y +LL    ++G   E   +FE+M  ++  +PD  
Sbjct: 822 AGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM-VAKGIEPDKM 880

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T+  MI      G V EA  + +E+L  G   ++    +LIQ   K +   +V++ LN +
Sbjct: 881 TYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEI 940

Query: 473 PELG 476
            E G
Sbjct: 941 GESG 944



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 166/390 (42%), Gaps = 53/390 (13%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
           I+ N  +P     ++         S   +++++ M  +RK   L +A  +F       + 
Sbjct: 118 IIRNSDSPLAVLGSIVKCYRSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVF-------LG 170

Query: 198 PDNVTFS-TLISCARM--NNLPNKAVE--W--FERMPSFGCDPDALTYSSMIDAYGRAGN 250
           P N  F  +L+SC  +  + L    VE  W  F+ M +    PD  TY++MI A+ + GN
Sbjct: 171 PKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGN 230

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
           V+ A  +      +    +   ++ +I     A   D  + +   M   G+ P++ TY+ 
Sbjct: 231 VKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDI 290

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L++     KR  + K +  EM D GL P   TY +L+  + R    E    +  EM   G
Sbjct: 291 LINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACG 350

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT----------- 419
           ++ ++ ++NTLL      G  ++A EI ++M   +  +PDS T+S +I            
Sbjct: 351 IEANLIIWNTLLNGVCKAGKMEKALEIMQEMM-EKGVEPDSQTYSLLIEGHCRGQNMARA 409

Query: 420 -------------------------ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
                                    +C C G +    A+  EM+  G +PN  V T+L+ 
Sbjct: 410 FELLDEMKKRKLAPTVLTYSVIINGLCRC-GNLQGTNAILREMVMNGLKPNAVVYTTLMT 468

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFC 484
            + K  R ++    L R+ E GI P D FC
Sbjct: 469 AHAKEGRVEESRMILERMREQGILP-DVFC 497



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 144/310 (46%), Gaps = 7/310 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN+ +    K  ++++A+ LFDD+  RG+ P+ VT++ ++     +  P  A +  
Sbjct: 669 DIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLL 728

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  PDA  Y+ +++   +    E A  L+     EK      +F+TLI+ Y  +
Sbjct: 729 EEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEML-EKGFASTVSFNTLIEGYCKS 787

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G      ++ EEM      PN +TY +L+D   +A    + K ++ EM +  + P   TY
Sbjct: 788 GKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTY 847

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
            SLL  Y       +  +++ EM  KG++   +T Y  + A C + G   EA ++ +D  
Sbjct: 848 TSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCRE-GNVMEACKL-KDEI 905

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE---PNLFVLTSLIQCYGKA 459
             +        + ++I     + +  E   + NE+ E+GF    P   V+    Q  G  
Sbjct: 906 LVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNM 965

Query: 460 QRTDDVVRAL 469
               +V+R++
Sbjct: 966 DEAAEVLRSM 975



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 102/235 (43%), Gaps = 1/235 (0%)

Query: 137 IILNNMTNPDTAALALTYFTNKL-KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           +ILN     +    AL  F   L K     + +N  ++ + K   L +A  L ++M+++ 
Sbjct: 745 VILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQ 804

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
             P++VT+++LI       +  +A   +  M      P A TY+S++  Y   GN+    
Sbjct: 805 FIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVS 864

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L++    +    D   +  +I  Y   GN      + +E+   G+  ++  Y+ L+  +
Sbjct: 865 ALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQAL 924

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            + +  ++V  +  E+ ++G      T + + R +  A   ++   V R M + G
Sbjct: 925 CKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFG 979



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 68/168 (40%), Gaps = 35/168 (20%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           + +A+RL+ +M +R V P   T+++L+         ++    FE M + G +PD +TY  
Sbjct: 825 MGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYV 884

Query: 241 MIDAYGRAGNV---------------EMAFGLYD----------------RARNE----K 265
           MIDAY R GNV                M+   YD                +  NE     
Sbjct: 885 MIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESG 944

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           +R+     S + + +  AGN D    V   M   G   N  +  +L+D
Sbjct: 945 FRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVD 992


>gi|356573733|ref|XP_003555011.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Glycine max]
          Length = 752

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 124/536 (23%), Positives = 229/536 (42%), Gaps = 62/536 (11%)

Query: 176 RKCRDLDKAERL------FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
           R  R L KAE+L      F  +L+ G K D  T+++LI+      LP KA E +E M   
Sbjct: 164 RVIRYLAKAEKLEVSFCCFKKILNAGCKVDTETYNSLITLFLNKGLPYKAFEMYESMEKA 223

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
           GC  D  TY  MI    ++G ++ AF L+   +   +R   N F++L+   G AG  D  
Sbjct: 224 GCSLDGSTYELMIPNLAKSGRLDAAFKLFQEMKVRGFRPGLNVFASLVDSMGKAGRLDSA 283

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           + VY EM+  G KP    Y +L+++  ++ +      ++ EM   G  PN+  Y  ++ +
Sbjct: 284 MKVYMEMRGYGYKPPPTIYVSLIESYVKSGKLETALRLWDEMRMAGFRPNFGLYTLIIES 343

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
           + ++   E  +S + +M++ G   + + Y  LL M A  G  D A +++  M ++   +P
Sbjct: 344 HAKSGKLEIAMSTFLDMEKAGFLPTPSTYACLLEMHAASGQIDPAMKLYNSM-TNAGLRP 402

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
              T++ ++T+ + +  V  A  +  EM   G+  ++   + ++  Y K    D  +R L
Sbjct: 403 GLSTYTVLLTLLANKKLVDVAAKILLEMKAMGYSVDV-TASDILMVYIKEGSVDLALRWL 461

Query: 470 NRLPELGITPDD-----RFCGCLLNVMTQTPK-------------------EELGKLVEC 505
             +   GI  ++      F  C+ + + ++ K                     L  LV C
Sbjct: 462 RFMGSSGIRTNNFIIRQLFESCMKSGLFESAKPLLETYVNSAAKVDLILYTSILAHLVRC 521

Query: 506 VEKSNSKLGYVVKLLLEEQDIEGDFK---------------KEATELFNSISKDVK---- 546
            E+ N +  +++ +L   +     F                    E F  I  +++    
Sbjct: 522 QEEKNER--HLMSILSATKHKAHSFMCGLFTGPEHRGQPVLTFVREFFQGIDYELEEGAA 579

Query: 547 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTA 605
           K + N L++  V +  +  A  + ++    +++   I       WSL +++LS+GAAL A
Sbjct: 580 KYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIA 639

Query: 606 LHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDS 661
           +   ++   K +      P  + + TG          L  V    L  + +PF  S
Sbjct: 640 VVHTLHRFRKRMLYYGIVPRRIKLVTG--------ATLKIVIAQMLSSVESPFEVS 687


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 158/352 (44%), Gaps = 36/352 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           E I YN  +  F +  D+++A R+ D+M+  G++ + + ++TL++         KA+E  
Sbjct: 310 EPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIM 369

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR---------------- 267
           + M   G +PD+ TYS +I+ + R  N+  AF L D  +  K                  
Sbjct: 370 QEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRC 429

Query: 268 -----------------IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
                            + PNA  ++TL+  +   G  +    + E M+  G+ P++  Y
Sbjct: 430 GNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCY 489

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N+L+    +AKR  + +T   EM +  L PN +TY + +  Y +A   E     + EM  
Sbjct: 490 NSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLS 549

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G+  +V +Y  L+      G   EAF +F  + S    Q D  T+S +I   S  GK+ 
Sbjct: 550 CGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQ-DVQTYSVLIHGLSRNGKMH 608

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           EA  +F+E+ E G  PN F   SLI    K    D   + L  +   GI PD
Sbjct: 609 EAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPD 660



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 150/314 (47%), Gaps = 6/314 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +  + K  +++ A+R F++ML  GV P+   ++ LI          +A   F  + 
Sbjct: 524 YGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFIL 583

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGN 285
           S     D  TYS +I    R G +  AFG++   + +   + PNAF+  +LI      GN
Sbjct: 584 SRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKG--LLPNAFTYNSLISGSCKQGN 641

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D    + EEM   G+ P+++TYN L+D + +A    + K ++ ++   GL+PN  TYA+
Sbjct: 642 VDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAA 701

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++  Y +++       +  EM  +G+     +YN +L  C      ++A ++F++M   E
Sbjct: 702 MVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEM--LE 759

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
                + +F+++I      GK+ EA  +  EM+E  F PN    TSLI    KA    + 
Sbjct: 760 KGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEA 819

Query: 466 VRALNRLPELGITP 479
            R    + E  + P
Sbjct: 820 KRLWLEMQERNVMP 833



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 153/341 (44%), Gaps = 1/341 (0%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K K +  V+ Y+V +    +C +L     +  +M+  G+KP+ V ++TL++         
Sbjct: 409 KRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVE 468

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           ++    ERM   G  PD   Y+S+I  + +A  +E A          + R + + +   I
Sbjct: 469 ESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFI 528

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             Y  AG  +     + EM + GV PN+  Y  L++   +     +  ++++ +    + 
Sbjct: 529 DGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVL 588

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
            +  TY+ L+    R     +   ++ E++EKG+  +   YN+L++     G  D+A ++
Sbjct: 589 QDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQL 648

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            E+M   +   PD  T++ +I      G++  A+ +F+++   G  PN     +++  Y 
Sbjct: 649 LEEM-CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYC 707

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
           K++      + L  +   G+ PD      +LN   +  K E
Sbjct: 708 KSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFE 748



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 148/310 (47%), Gaps = 2/310 (0%)

Query: 147 TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           T A ++  F    +  ++V  Y+V +    +   + +A  +F ++ ++G+ P+  T+++L
Sbjct: 573 TEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSL 632

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
           IS +      +KA +  E M   G +PD +TY+ +ID   +AG +E A  L+D       
Sbjct: 633 ISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGL 692

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             +   ++ ++  Y  + N      + EEM   GV P+   YN +L+   + ++  +   
Sbjct: 693 TPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALD 752

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +++EM + G +    ++ +L+  Y ++   ++   +  EM EK    +   Y +L+    
Sbjct: 753 LFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNC 811

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G   EA  ++ +M+   N  P + T++S++      G +SE  A+F EM+  G EP+ 
Sbjct: 812 KAGMMGEAKRLWLEMQ-ERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDK 870

Query: 447 FVLTSLIQCY 456
                +I  Y
Sbjct: 871 MTYYVMIDAY 880



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 164/390 (42%), Gaps = 71/390 (18%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
           I+ N  +P     ++         S   +++++ M  +RK   L +A  +F       + 
Sbjct: 127 IIRNSDSPLAVLGSIVKCYRSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVF-------LG 179

Query: 198 PDNVTFS-TLISCARM--NNLPNKAVE--W--FERMPSFGCDPDALTYSSMIDAYGRAGN 250
           P N  F  +L+SC  +  + L    VE  W  F+ M +    PD  TY++MI A+ + GN
Sbjct: 180 PKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGN 239

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
           V+                  +A   L+++   A   D  + +   M   G+ P++ TY+ 
Sbjct: 240 VK------------------DAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDI 281

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L++     KR  + K +  EM D GL P   TY +L+  + R    E    +  EM   G
Sbjct: 282 LINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACG 341

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT----------- 419
           ++ ++ ++NTLL      G  ++A EI ++M   +  +PDS T+S +I            
Sbjct: 342 IEANLIIWNTLLNGVCKAGKMEKALEIMQEMM-EKGVEPDSQTYSLLIEGHCRGQNMARA 400

Query: 420 -------------------------ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
                                    +C C G +    A+  EM+  G +PN  V T+L+ 
Sbjct: 401 FELLDEMKKRKLAPTVLTYSVIINGLCRC-GNLQGTNAILREMVMNGLKPNAVVYTTLMT 459

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFC 484
            + K  R ++    L R+ E GI P D FC
Sbjct: 460 AHAKEGRVEESRMILERMREQGILP-DVFC 488



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 135/315 (42%), Gaps = 46/315 (14%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN+ +    K  ++++A+ LFDD+  RG+ P+ VT++ ++     +  P  A +  
Sbjct: 660 DIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLL 719

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  PDA  Y+ +++   +    E A  L+     EK      +F+TLI+ Y  +
Sbjct: 720 EEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEML-EKGFASTVSFNTLIEGYCKS 778

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G      ++ EEM      PN +TY +L+D   +A    + K ++ EM +  + P   TY
Sbjct: 779 GKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTY 838

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            SLL  Y                                    ++G   E   +FE+M  
Sbjct: 839 TSLLHGY-----------------------------------HNIGNMSEVSALFEEM-V 862

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML------EAGFE---PNLFVLTSLIQ 454
           ++  +PD  T+  MI      G V EA  + +E+L      ++GF    P   V+    Q
Sbjct: 863 AKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQ 922

Query: 455 CYGKAQRTDDVVRAL 469
             G      +V+R++
Sbjct: 923 IAGNMDEAAEVLRSM 937



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 87/219 (39%), Gaps = 42/219 (19%)

Query: 137 IILNNMTNPDTAALALTYFTNKL-KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           +ILN     +    AL  F   L K     + +N  ++ + K   L +A  L ++M+++ 
Sbjct: 736 VILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQ 795

Query: 196 VKPDNVTFSTLI--SC---------------ARMNNLP------------------NKAV 220
             P++VT+++LI  +C                  N +P                  ++  
Sbjct: 796 FIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVS 855

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA------RNEKWRIDPNAFS 274
             FE M + G +PD +TY  MIDAY R GNV  A  L D            +R+     S
Sbjct: 856 ALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCS 915

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
            + + +  AGN D    V   M   G   N  +  +L+D
Sbjct: 916 VIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVD 954



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 111/278 (39%), Gaps = 24/278 (8%)

Query: 270 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
           PN+  F  L+  Y   G     +NV+   K    +P++++ N+LL  + +  +      +
Sbjct: 152 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 211

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           +  M  + + P+  TY +++ A+ +    +D   V  EM EK   L              
Sbjct: 212 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLL-------------- 257

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
               DEA E+   M   +   PD +T+  +I       +  EA+ M  EM++ G +P   
Sbjct: 258 ----DEAIELKRSM-VDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPI 312

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE--LGKLVEC 505
              +LI  + +    +   R  + +   GI  +      LLN + +  K E  L  + E 
Sbjct: 313 TYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM 372

Query: 506 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543
           +EK          LL+E     G     A EL + + K
Sbjct: 373 MEKGVEPDSQTYSLLIEGH-CRGQNMARAFELLDEMKK 409


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 177/374 (47%), Gaps = 2/374 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ +  F +C     A  +   ++  G +PD  TF+TLI    +    ++AV   +RM  
Sbjct: 117 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE 176

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            GC PD +TY+S+++   R+G+  +A  L  +      + D   +ST+I      G  D 
Sbjct: 177 NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDA 236

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            +++++EM+  G+K +++TYN+L+  + +A +      + K+M    + PN  T+  LL 
Sbjct: 237 AISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLD 296

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            + +    ++   +Y+EM  +G+  ++  YNTL+          EA  +  D+     C 
Sbjct: 297 VFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML-DLMVRNKCS 355

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD  TF+S+I       +V +   +F  + + G   N    + L+Q + ++ +       
Sbjct: 356 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 415

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIE 527
              +   G+ PD    G LL+ +    K E+  ++ E ++KS   LG V+   + E   +
Sbjct: 416 FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCK 475

Query: 528 GDFKKEATELFNSI 541
           G   ++A  LF S+
Sbjct: 476 GGKVEDAWNLFCSL 489



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 143/301 (47%), Gaps = 3/301 (0%)

Query: 156 TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
           T  +K+S  V+ YN  ++   K    +    L  DM+ R + P+ +TF+ L+        
Sbjct: 246 TKGIKSS--VVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGK 303

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
             +A E ++ M + G  P+ +TY++++D Y     +  A  + D     K   D   F++
Sbjct: 304 LQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTS 363

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LIK Y      D  + V+  +   G+  N +TY+ L+    ++ +    + +++EM  +G
Sbjct: 364 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 423

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           + P+  TY  LL         E  L ++ ++++  M L + +Y T++      G  ++A+
Sbjct: 424 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 483

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            +F  +   +  +P+  T++ MI+    +G +SEA  +  +M E G  PN     +LI+ 
Sbjct: 484 NLFCSL-PCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 542

Query: 456 Y 456
           +
Sbjct: 543 H 543



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 139/299 (46%), Gaps = 1/299 (0%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D A  LF +M+     P  V FS   S        N  +++ +++   G   +  T + M
Sbjct: 60  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 119

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I+ + R      A+ +  +     +  D   F+TLIK     G     + + + M   G 
Sbjct: 120 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 179

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           +P+++TYN++++ + R+        + ++M +  +  +  TY++++ +  R    +  +S
Sbjct: 180 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 239

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           +++EM+ KG++ SV  YN+L+      G  ++   + +DM S E   P+  TF+ ++ + 
Sbjct: 240 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE-IVPNVITFNVLLDVF 298

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              GK+ EA  ++ EM+  G  PN+    +L+  Y    R  +    L+ +     +PD
Sbjct: 299 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 357



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 104/211 (49%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S +++ +   +K +   + +D   ++F ++  RG+  + VT+S L+     +     A
Sbjct: 353 KCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 412

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
            E F+ M S G  PD +TY  ++D     G +E A  +++  +  K  +    ++T+I+ 
Sbjct: 413 EELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 472

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
               G  +   N++  +   GVKPN++TY  ++  + +     +   + ++M ++G +PN
Sbjct: 473 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 532

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
             TY +L+RA+ R      +  +  EMK  G
Sbjct: 533 DCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 563



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 149/359 (41%), Gaps = 40/359 (11%)

Query: 137 IILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+L+ + +      AL  F +  K K    +++Y   ++   K   ++ A  LF  +  +
Sbjct: 433 ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK 492

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           GVKP+ +T++ +IS        ++A     +M   G  P+  TY+++I A+ R G++  +
Sbjct: 493 GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTAS 552

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK----PNMITYNN 310
             L +  ++  +  D ++   +I +  +A            MK + ++        +  +
Sbjct: 553 AKLIEEMKSCGFSADASSIKMVIDMLLSA------------MKRLTLRYCLSKGSKSRQD 600

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL-----SVYRE 365
           LL+  G  K      T  K    N ++ + N      R    A    D       SV ++
Sbjct: 601 LLELSGSEKIRLSSLTFVKMFPCNTITTSLNVNTIEARGMNSAELNRDLRKLRRSSVLKK 660

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
            K + +++ VT  N LL      G  D   ++  D++       D+  ++         G
Sbjct: 661 FKNRDVRVLVT--NELLTW----GLEDAECDLMVDLE----LPTDAVHYAHRAGRMRRPG 710

Query: 426 K---VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +   V  AE +  EM++ G  PN    +SLI  + K  R D+     N++ +L +T  D
Sbjct: 711 RKMTVVTAEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEA----NQMLDLMVTKGD 765


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 141/335 (42%), Gaps = 36/335 (10%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +  F K    D  +R F DM+  G KP   T++ +I C         A   FE M  
Sbjct: 102 NGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKF 161

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  PD +TY+SMID YG+ G ++     ++  ++     D   +++LI  +  +G    
Sbjct: 162 RGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPK 221

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L  Y EMK  G+KPN+++Y+ L+D   +     Q    Y +M   G  PN  TY SL+ 
Sbjct: 222 GLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVD 281

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A  +     D   +  EM E G++ +V  Y  L+    D           E MK      
Sbjct: 282 ANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDA----------ERMK------ 325

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
                               EAE +F +M+ AG  PNL    +LI  + KA+  D  +  
Sbjct: 326 --------------------EAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALEL 365

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 503
           LN L   GI PD    G  +  +    K E  K+V
Sbjct: 366 LNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVV 400



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 152/325 (46%), Gaps = 5/325 (1%)

Query: 154 YFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
           +F + + A  +  V  YN+ +    K  D++ A  LF++M  RG+ PD VT++++I    
Sbjct: 120 FFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYG 179

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
                +  V +FE M S  C+PD +TY+S+I+ + ++G +      Y   +    + +  
Sbjct: 180 KVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVV 239

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           ++STL+  +         +  Y +M+ +G  PN  TY +L+D   +         +  EM
Sbjct: 240 SYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEM 299

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
            + G+  N  TY +L+     A   ++   ++ +M   G+  ++  YN L+         
Sbjct: 300 LEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNM 359

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
           D A E+  ++K     QPD   + + I  +C    K+  A+ + NEM E G + N  + T
Sbjct: 360 DRALELLNELK-GRGIQPDLLLYGTFIWGLCGLE-KIEAAKVVMNEMQENGIKANTLIYT 417

Query: 451 SLIQCYGKAQRTDDVVRALNRLPEL 475
           +L+  Y K+    + +  L  + EL
Sbjct: 418 TLMDAYFKSGNPTEGLHLLEEMQEL 442



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 164/366 (44%), Gaps = 38/366 (10%)

Query: 153 TYFTNKLKA---SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC 209
            YF  ++K+     +VI YN  +  F K   L K    + +M   G+KP+ V++STL+  
Sbjct: 188 VYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDA 247

Query: 210 ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF-------------- 255
               ++  +A++++  M   G  P+  TY+S++DA  + GN+  AF              
Sbjct: 248 FCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWN 307

Query: 256 ---------GLYDRARNEKWR----------IDPN--AFSTLIKLYGTAGNFDGCLNVYE 294
                    GL D  R ++            + PN  +++ LI  +  A N D  L +  
Sbjct: 308 VVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLN 367

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           E+K  G++P+++ Y   +  +   ++    K +  EM +NG+  N   Y +L+ AY ++ 
Sbjct: 368 ELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSG 427

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
              + L +  EM+E   +++V  +  L+          +A + F  M +    QP++  +
Sbjct: 428 NPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVY 487

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           ++MI       +V  A  +F +M + G  P+    TSL+    K     + +   +++ E
Sbjct: 488 TAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAE 547

Query: 475 LGITPD 480
           +G+  D
Sbjct: 548 IGMKLD 553



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 120/254 (47%), Gaps = 11/254 (4%)

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTA 283
           +P FG   DAL +S +ID     G +E A   + + +  ++R+ P   S   L+  +   
Sbjct: 60  VPGFGV-FDAL-FSVLIDL----GMLEEATQCFSKMK--RFRVFPKTRSCNGLLHKFAKL 111

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  DG    +++M   G KP + TYN ++D M +       + +++EM   GL P+  TY
Sbjct: 112 GKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTY 171

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S++  YG+    +DT+  + EMK    +  V  YN+L+      G   +  E + +MK 
Sbjct: 172 NSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQ 231

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S   +P+  ++S+++        + +A   + +M   G  PN F  TSL+    K     
Sbjct: 232 S-GLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLS 290

Query: 464 DVVRALNRLPELGI 477
           D  R  N + E+G+
Sbjct: 291 DAFRLANEMLEVGV 304



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 92/184 (50%), Gaps = 3/184 (1%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
           N +KA+   ++Y   M  + K  +  +   L ++M +   +   VTF  LI     N L 
Sbjct: 407 NGIKAN--TLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLV 464

Query: 217 NKAVEWFERMPS-FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
           +KA+++F RM + FG  P+A  Y++MID   +   V+ A  L+++   E    D  A+++
Sbjct: 465 SKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTS 524

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           L+      GN    L + ++M  IG+K +++ Y +L+    +  +  + ++  +EM    
Sbjct: 525 LMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEE 584

Query: 336 LSPN 339
           + P+
Sbjct: 585 ILPD 588



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 2/164 (1%)

Query: 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDML-DRGVKPDNVT 202
           NP T  L L     +L     V+ + V +    K + + KA   F  M  D G++P+   
Sbjct: 428 NP-TEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAV 486

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           ++ +I      N    A   FE+M   G  PD   Y+S++D   + GN+  A  L D+  
Sbjct: 487 YTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMA 546

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
               ++D  A+++L+  +          +  EEM    + P+ +
Sbjct: 547 EIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDEV 590


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 168/319 (52%), Gaps = 5/319 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y+V +  + +   L K  +L +++  +G+KP+  T++++IS         +A +  
Sbjct: 286 DVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVL 345

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M +    PD + Y+++I  +G++GNV + + L+D  + +K   D   ++++I     A
Sbjct: 346 RVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQA 405

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       ++ EM + G+KP+ +TY  L+D   +A    +  +++ +M + GL+PN  TY
Sbjct: 406 GKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTY 465

Query: 344 ASLLRAYGRARYGEDTLS--VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            +L+   G  + GE  ++  +  EM EKG+Q +V  YN L+     VG  ++A ++ E+M
Sbjct: 466 TALVD--GLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEM 523

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             +    PD+ T+++++      G++++A  +   ML+ G +P +     L+  +  +  
Sbjct: 524 DLA-GFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGM 582

Query: 462 TDDVVRALNRLPELGITPD 480
            +D  R +  + + GI P+
Sbjct: 583 LEDGERLIKWMLDKGIMPN 601



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 153/322 (47%), Gaps = 1/322 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ + +  +   + +A  L   M  RG  PD V++S ++          K ++  E + 
Sbjct: 255 YNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQ 314

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P+  TY+S+I    + G V  A  +    +N++   D   ++TLI  +G +GN  
Sbjct: 315 RKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVS 374

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +++EMK   + P+ +TY +++  + +A +  + + ++ EM   GL P+  TY +L+
Sbjct: 375 VEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALI 434

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             Y +A   ++  S++ +M EKG+  +V  Y  L+      G  D A E+  +M S +  
Sbjct: 435 DGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEM-SEKGL 493

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           QP+  T++++I      G + +A  +  EM  AGF P+    T+++  Y K         
Sbjct: 494 QPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHE 553

Query: 468 ALNRLPELGITPDDRFCGCLLN 489
            L  + + G+ P       L+N
Sbjct: 554 LLRIMLDKGLQPTIVTFNVLMN 575



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 142/309 (45%), Gaps = 3/309 (0%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A +LF +ML +G+KPD VT++ LI          +A     +M   G  P+ +TY++++
Sbjct: 410 EARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALV 469

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
           D   + G V++A  L      +  + +   ++ LI      GN +  + + EEM   G  
Sbjct: 470 DGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFF 529

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P+ ITY  ++D   +     +   + + M D GL P   T+  L+  +  +   ED   +
Sbjct: 530 PDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERL 589

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
            + M +KG+  + T +N+L+             EI++ M  ++   PD+ T++ +I    
Sbjct: 590 IKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGM-HAQGVVPDTNTYNILIK-GH 647

Query: 423 CRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           C+ + + EA  +  EM+E GF        SLI+ + K ++ ++  +    +   G   + 
Sbjct: 648 CKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEK 707

Query: 482 RFCGCLLNV 490
                 ++V
Sbjct: 708 EIYDIFVDV 716



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 126/268 (47%), Gaps = 41/268 (15%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWF 223
           V+ Y   +    KC ++D A  L  +M ++G++P+  T++ LI+   ++ N+  +AV+  
Sbjct: 462 VVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNI-EQAVKLM 520

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVE-----------------------------MA 254
           E M   G  PD +TY++++DAY + G +                              M+
Sbjct: 521 EEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMS 580

Query: 255 FGLYDRARNEKWRID----PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
             L D  R  KW +D    PNA  F++L+K Y    N    + +Y+ M A GV P+  TY
Sbjct: 581 GMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTY 640

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N L+    +A+   +   ++KEM + G S    +Y SL++ + + +  E+   ++ EM+ 
Sbjct: 641 NILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRT 700

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            G      +Y+  +    DV Y +  +E
Sbjct: 701 HGFIAEKEIYDIFV----DVNYEEGNWE 724



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 127/304 (41%), Gaps = 51/304 (16%)

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
           +G  P  L +         AG +  A  L+D+  N  + +  +  S  + L   + +FDG
Sbjct: 177 WGAHP--LVFDVFFQVLVEAGLLLEAGKLFDKLLN--YGVLVSVDSCNLFLARLSNSFDG 232

Query: 289 ---CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 V+ E   +GV  N ++YN +L  + +  +  +  ++  +M   G  P+  +Y+ 
Sbjct: 233 IRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSV 292

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA----------- 394
           ++  Y +       L +  E++ KG++ +   YN++++     G   EA           
Sbjct: 293 IVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQR 352

Query: 395 ------------------------FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
                                   +++F++MK  +   PD  T++SMI      GKV EA
Sbjct: 353 IFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKK-IVPDFVTYTSMIHGLCQAGKVVEA 411

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DR 482
             +F+EML  G +P+    T+LI  Y KA    +     N++ E G+TP+        D 
Sbjct: 412 RKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDG 471

Query: 483 FCGC 486
            C C
Sbjct: 472 LCKC 475



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 91/206 (44%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I Y   M  + K  ++ KA  L   MLD+G++P  VTF+ L++   M+ +        
Sbjct: 531 DTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLI 590

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   G  P+A T++S++  Y    N+     +Y     +    D N ++ LIK +  A
Sbjct: 591 KWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKA 650

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            N      +++EM   G      +YN+L+    + K+  + + +++EM  +G       Y
Sbjct: 651 RNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIY 710

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEK 369
              +         E+TL +  E  EK
Sbjct: 711 DIFVDVNYEEGNWENTLELCDEAIEK 736


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 145/282 (51%), Gaps = 1/282 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +    K R L  AE L ++M +RGV PD  TF+TLI    +    +KA++ F
Sbjct: 50  DVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLF 109

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M +    PD +TY+++ID   R G+++ A  L+D   + +   +   +S LI  +   
Sbjct: 110 DTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEK 169

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +      +EM   G+ PN++TYN+++    R+    + +   ++M  N +SP+  TY
Sbjct: 170 GQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITY 229

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+  Y +     D   +   M+++ +Q  V  YN L+   +  G   EA  IFE M  
Sbjct: 230 NTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKM-C 288

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
           ++  +PD +T+ SMI      G   EA  + +EML+ GF P+
Sbjct: 289 AKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 330



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 150/318 (47%), Gaps = 1/318 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++Y + +  F +   +  A R+ D+M+  G  PD VT++TL++          A      
Sbjct: 17  VIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNE 76

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  PD  T++++I  Y   G ++ A  L+D   N++ R D   ++TLI      G+
Sbjct: 77  MRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 136

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D   +++++M +  + PN +TY+ L+D+     +         EM + G+ PN  TY S
Sbjct: 137 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 196

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +++ Y R+          ++M    +   +  YNTL+          +AF++  +M   E
Sbjct: 197 IIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLL-NMMEKE 255

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             QPD  T++ +I   S  G V EA  +F +M   G EP+ +   S+I  +  A  + + 
Sbjct: 256 KVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEA 315

Query: 466 VRALNRLPELGITPDDRF 483
            +  + + + G  PDD+F
Sbjct: 316 FQLHDEMLQRGFAPDDKF 333



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 118/286 (41%), Gaps = 36/286 (12%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G+ PD V ++ +I       L + A+   + M   GC PD +TY+++++   +   +  A
Sbjct: 11  GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 70

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
            GL +  R      D   F+TLI  Y   G  D  L +++ M    ++P+++TYN L+D 
Sbjct: 71  EGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDG 130

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           M R     +   ++ +M    + PN  TY+ L+ ++      ED      EM  KG+   
Sbjct: 131 MCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGIL-- 188

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
                                             P+  T++S+I      G VS+ +   
Sbjct: 189 ----------------------------------PNIMTYNSIIKGYCRSGNVSKGQKFL 214

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +M+     P+L    +LI  Y K  +  D  + LN + +  + PD
Sbjct: 215 QKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPD 260



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 1/186 (0%)

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           EM+  G+ P+ + Y  ++    RA        +  EM   G  P+  TY +LL    + R
Sbjct: 6   EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 65

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
              D   +  EM+E+G+   +  + TL+      G  D+A ++F+ M  ++  +PD  T+
Sbjct: 66  RLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTM-LNQRLRPDIVTY 124

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +++I     +G + +A  ++++M      PN    + LI  + +  + +D    L+ +  
Sbjct: 125 NTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMIN 184

Query: 475 LGITPD 480
            GI P+
Sbjct: 185 KGILPN 190



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 56/100 (56%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S ++I YN  +  + K   +  A +L + M    V+PD VT++ LI+   ++    +A
Sbjct: 221 KVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEA 280

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD 259
              FE+M + G +PD  TY SMI+ +  AGN + AF L+D
Sbjct: 281 GWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHD 320


>gi|168012346|ref|XP_001758863.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690000|gb|EDQ76369.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 367

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 153/314 (48%), Gaps = 2/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + + V  +     +A  LFD+ML  GV+    +F+++I       L  KA   +E M 
Sbjct: 13  YTLVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGLFKKAWRMYEDMV 72

Query: 228 SFGCDPDALTYSSMIDAYGRAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
             G   D +T S+++   G+    VE A  ++ + +          ++TL+ +    G+ 
Sbjct: 73  ESGIQADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYNTLLSVLSRGGHT 132

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           + C  +  EM+ + V PN+IT+N LL    +  R  +   +Y+ + D GL P   TY  L
Sbjct: 133 ERCKELEIEMQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDAGLKPTVVTYTGL 192

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           ++ Y RA   ++ + V+ EM+  G +  + +Y+ ++++    G  +EA  +F  ++ ++ 
Sbjct: 193 VQMYCRASKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEAALVFRQLQ-NDG 251

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             P+  T+  +I     +GK+ E  A FNEML +G  P+L +   ++  YG+   +    
Sbjct: 252 YIPNVVTWCCLIQAFGWQGKMQEIGAFFNEMLASGCLPDLTLYNVMMGAYGRYGHSVQAA 311

Query: 467 RALNRLPELGITPD 480
               R+   GI+P+
Sbjct: 312 ILFRRMQAQGISPN 325



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 157/349 (44%), Gaps = 8/349 (2%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVIL--YNVTMKVFRKCRDLDKAERLFDDMLDR 194
           ++L  +        A   F   L +  EV L  +N  +  + +     KA R+++DM++ 
Sbjct: 15  LVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGLFKKAWRMYEDMVES 74

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVE-WFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           G++ D +T STL+S      LP +  E  F ++   G  P   TY++++    R G+ E 
Sbjct: 75  GIQADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYNTLLSVLSRGGHTER 134

Query: 254 AFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
              L      ++  + PN   F+TL+ ++   G       VY+ +   G+KP ++TY  L
Sbjct: 135 CKEL--EIEMQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDAGLKPTVVTYTGL 192

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +    RA +  +   ++ EM   G  P+   Y+ ++  YG+A   E+   V+R+++  G 
Sbjct: 193 VQMYCRASKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEAALVFRQLQNDGY 252

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
             +V  +  L+      G   E    F +M +S  C PD   ++ M+      G   +A 
Sbjct: 253 IPNVVTWCCLIQAFGWQGKMQEIGAFFNEMLAS-GCLPDLTLYNVMMGAYGRYGHSVQAA 311

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +F  M   G  PN     ++IQ Y  +++  D    L+++   G +PD
Sbjct: 312 ILFRRMQAQGISPNAVSYDTMIQAYCHSKQAADAQIVLDQMTRAGFSPD 360



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 134/286 (46%), Gaps = 2/286 (0%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           +KP+  T++ ++       L  +A E F+ M S G +    +++SMI AY R G  + A+
Sbjct: 6   LKPNGHTYTLVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGLFKKAW 65

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYG-TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
            +Y+       + D    STL+   G T    +    ++ ++K  G+ P + TYN LL  
Sbjct: 66  RMYEDMVESGIQADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYNTLLSV 125

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           + R     + K +  EM    + PN  T+ +LL  + +    ++   VY+ + + G++ +
Sbjct: 126 LSRGGHTERCKELEIEMQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDAGLKPT 185

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           V  Y  L+ M        EA E+F +M+    C+PD   +S MI++    G   EA  +F
Sbjct: 186 VVTYTGLVQMYCRASKHKEAIEVFLEMRRV-GCKPDLMIYSLMISVYGKAGSAEEAALVF 244

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            ++   G+ PN+     LIQ +G   +  ++    N +   G  PD
Sbjct: 245 RQLQNDGYIPNVVTWCCLIQAFGWQGKMQEIGAFFNEMLASGCLPD 290



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 130/270 (48%), Gaps = 3/270 (1%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           P+  TY+ ++   GRAG    A  L+D   +    +  ++F+++I  Y   G F     +
Sbjct: 8   PNGHTYTLVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGLFKKAWRM 67

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           YE+M   G++ + IT + LL  +G+ + P +  + I+ ++ +NG+ P   TY +LL    
Sbjct: 68  YEDMVESGIQADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYNTLLSVLS 127

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           R  + E    +  EM+   +  ++  +NTLL M    G   EA E+++ +  +   +P  
Sbjct: 128 RGGHTERCKELEIEMQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDA-GLKPTV 186

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            T++ ++ +     K  EA  +F EM   G +P+L + + +I  YGKA   ++      +
Sbjct: 187 VTYTGLVQMYCRASKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEAALVFRQ 246

Query: 472 LPELGITPDDRFCGCLLNVMT-QTPKEELG 500
           L   G  P+     CL+     Q   +E+G
Sbjct: 247 LQNDGYIPNVVTWCCLIQAFGWQGKMQEIG 276



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 129/246 (52%), Gaps = 10/246 (4%)

Query: 264 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA--- 318
           +K R+ PN   ++ ++ + G AG       +++EM + GV+  + ++N+++    R    
Sbjct: 2   QKGRLKPNGHTYTLVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGLF 61

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS-VYREMKEKGMQLSVTL 377
           K+ W+   +Y++M ++G+  +  T ++LL   G+ +   +T   ++ ++KE G+   V  
Sbjct: 62  KKAWR---MYEDMVESGIQADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVET 118

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           YNTLL++ +  G+T+   E+  +M+  E   P+  TF++++ +    G++ EA  ++  +
Sbjct: 119 YNTLLSVLSRGGHTERCKELEIEMQRLEVV-PNIITFNTLLMMHVQGGRLKEAAEVYQRI 177

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 497
           L+AG +P +   T L+Q Y +A +  + +     +  +G  PD      +++V  +    
Sbjct: 178 LDAGLKPTVVTYTGLVQMYCRASKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSA 237

Query: 498 ELGKLV 503
           E   LV
Sbjct: 238 EEAALV 243



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 102/225 (45%), Gaps = 35/225 (15%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
            +L+    +I +N  + +  +   L +A  ++  +LD G+KP  VT++ L+      +  
Sbjct: 143 QRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDAGLKPTVVTYTGLVQMYCRASKH 202

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
            +A+E F  M   GC PD + YS MI  YG+AG+ E A  ++ + +N+ +  +   +  L
Sbjct: 203 KEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEAALVFRQLQNDGYIPNVVTWCCL 262

Query: 277 IKLYGTAGNFD------------GCL------NV-----------------YEEMKAIGV 301
           I+ +G  G               GCL      NV                 +  M+A G+
Sbjct: 263 IQAFGWQGKMQEIGAFFNEMLASGCLPDLTLYNVMMGAYGRYGHSVQAAILFRRMQAQGI 322

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
            PN ++Y+ ++     +K+    + +  +MT  G SP+ ++ A L
Sbjct: 323 SPNAVSYDTMIQAYCHSKQAADAQIVLDQMTRAGFSPDRSSRAML 367


>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Glycine max]
          Length = 576

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 155/311 (49%), Gaps = 4/311 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI YN+ ++ F +     +AE  +  +L+    P   T++ LI    ++ L  KA   F
Sbjct: 154 DVICYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIKAYCISGLLEKAEAVF 213

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M ++G    A+ Y++ I+   + GN + A  ++ R + +  +     ++ LI LYG A
Sbjct: 214 AEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTMLINLYGKA 273

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     L ++ EM +   KPN+ TY  L++   R     + + ++++M + GL P+   Y
Sbjct: 274 GKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAY 333

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ AY RA Y      ++  M+  G +     YN L+      G+ D+A  +F+DMK 
Sbjct: 334 NALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKR 393

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---Q 460
                P   +   +++  S  G V++ E + N+M ++G + + +VL S++  YG+     
Sbjct: 394 V-GITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFG 452

Query: 461 RTDDVVRALNR 471
           + ++V+R + +
Sbjct: 453 KMEEVLRVMEK 463



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 153/313 (48%), Gaps = 1/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +K +     L+KAE +F +M + G+    V ++  I+        +KA E F+RM 
Sbjct: 193 YALLIKAYCISGLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMK 252

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C P   TY+ +I+ YG+AG   MA  L+    +   + +   ++ L+  +   G  +
Sbjct: 253 KDACKPTTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCE 312

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V+E+M+  G++P++  YN L++   RA  P+    I+  M   G  P+  +Y  L+
Sbjct: 313 KAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILV 372

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            AYG+A + +D  +V+++MK  G+  ++  +  LL+  + +G  ++  EI   M  S   
Sbjct: 373 DAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKS-GL 431

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           + D++  +SM+ +    G+  + E +   M +  +  ++     LI  YG+A   + +  
Sbjct: 432 KLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIERMED 491

Query: 468 ALNRLPELGITPD 480
               LP  G+ PD
Sbjct: 492 LFQLLPSKGLKPD 504



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 147/323 (45%), Gaps = 1/323 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++YN  +    K  + DKAE +F  M     KP   T++ LI+          A++ F  
Sbjct: 226 VVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTMLINLYGKAGKSFMALKLFHE 285

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S  C P+  TY+++++A+ R G  E A  ++++ +      D  A++ L++ Y  AG 
Sbjct: 286 MMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGY 345

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
             G   ++  M+ +G +P+  +YN L+D  G+A      + ++K+M   G++P   ++  
Sbjct: 346 PYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMV 405

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           LL AY +         +  +M + G++L   + N++L +   +G   +  E+   M+   
Sbjct: 406 LLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGS 465

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
               D  T++ +I      G +   E +F  +   G +P++   TS I  Y K +     
Sbjct: 466 YV-ADISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKC 524

Query: 466 VRALNRLPELGITPDDRFCGCLL 488
           +     + + G  PD      LL
Sbjct: 525 LEIFEEMIDDGCYPDGGTAKVLL 547



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 141/316 (44%), Gaps = 3/316 (0%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           +L    KPD + ++ LI       L  +A   + ++    C P   TY+ +I AY  +G 
Sbjct: 146 LLRSSFKPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIKAYCISGL 205

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
           +E A  ++   RN         ++  I      GN D    +++ MK    KP   TY  
Sbjct: 206 LEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTM 265

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L++  G+A + +    ++ EM  +   PN  TY +L+ A+ R    E    V+ +M+E G
Sbjct: 266 LINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAG 325

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
           ++  V  YN L+   +  GY   A EIF  M+    C+PD  +++ ++      G   +A
Sbjct: 326 LEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHM-GCEPDRASYNILVDAYGKAGFQDDA 384

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
           EA+F +M   G  P +     L+  Y K    +     LN++ + G+  D      +LN+
Sbjct: 385 EAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNL 444

Query: 491 MTQTPKEELGKLVECV 506
             +    + GK+ E +
Sbjct: 445 YGRLG--QFGKMEEVL 458



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 141/305 (46%), Gaps = 1/305 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + + ++ K      A +LF +M+    KP+  T++ L++      L  KA E FE+M 
Sbjct: 263 YTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQ 322

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G +PD   Y+++++AY RAG    A  ++   ++     D  +++ L+  YG AG  D
Sbjct: 323 EAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQD 382

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V+++MK +G+ P M ++  LL    +     + + I  +M  +GL  +     S+L
Sbjct: 383 DAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSML 442

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YGR         V R M++      ++ YN L+      G+ +   ++F+ +  S+  
Sbjct: 443 NLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIERMEDLFQ-LLPSKGL 501

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD  T++S I   S +    +   +F EM++ G  P+      L+       +T+ V  
Sbjct: 502 KPDVVTWTSRIGAYSKKKLYLKCLEIFEEMIDDGCYPDGGTAKVLLAACSNEDQTEQVTT 561

Query: 468 ALNRL 472
            +  +
Sbjct: 562 VIRTM 566



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 142/318 (44%), Gaps = 15/318 (4%)

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
           W     SF   PD + Y+ +I+A+G+    + A   Y +    +     + ++ LIK Y 
Sbjct: 144 WILLRSSF--KPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIKAYC 201

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            +G  +    V+ EM+  G+  + + YN  ++ + +     + + I+K M  +   P   
Sbjct: 202 ISGLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTE 261

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY  L+  YG+A      L ++ EM     + ++  Y  L+   A  G  ++A E+FE M
Sbjct: 262 TYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQM 321

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           + +   +PD + +++++   S  G    A  +F+ M   G EP+      L+  YGKA  
Sbjct: 322 QEA-GLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGF 380

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE------KSNSKLG- 514
            DD       +  +GITP  +    LL+  ++     +G + +C E      KS  KL  
Sbjct: 381 QDDAEAVFKDMKRVGITPTMKSHMVLLSAYSK-----MGSVNKCEEILNQMCKSGLKLDT 435

Query: 515 YVVKLLLEEQDIEGDFKK 532
           YV+  +L      G F K
Sbjct: 436 YVLNSMLNLYGRLGQFGK 453



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 114/272 (41%), Gaps = 35/272 (12%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +  Y   +  F +    +KAE +F+ M + G++PD   ++ L+        P  A E F 
Sbjct: 295 ICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFS 354

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAG---NVEMAFG------------------------- 256
            M   GC+PD  +Y+ ++DAYG+AG   + E  F                          
Sbjct: 355 LMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMG 414

Query: 257 -------LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
                  + ++      ++D    ++++ LYG  G F     V   M+      ++ TYN
Sbjct: 415 SVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYN 474

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            L++  G+A    +++ +++ +   GL P+  T+ S + AY + +     L ++ EM + 
Sbjct: 475 ILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKCLEIFEEMIDD 534

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           G          LLA C++   T++   +   M
Sbjct: 535 GCYPDGGTAKVLLAACSNEDQTEQVTTVIRTM 566


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 171/369 (46%), Gaps = 13/369 (3%)

Query: 119 VFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKC 178
           +F  ++ LG   L   C I+++ +        A  +    +K   E  L   T  +   C
Sbjct: 105 LFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYC 164

Query: 179 R--DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
               ++ A  LFD +L  G KP+ VT++TLI C   N   N AVE F +M + G  P+ +
Sbjct: 165 HWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVV 224

Query: 237 TYSSMIDA---YGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLN 291
           TY++++      GR G+   A+ L D     K RI+PN   F+ LI  +   G       
Sbjct: 225 TYNALVTGLCEIGRWGDA--AWLLRDMM---KRRIEPNVITFTALIDAFVKVGKLMEAKE 279

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           +Y  M  + V P++ TY +L++ +       + + ++  M  NG  PN   Y +L+  + 
Sbjct: 280 LYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFC 339

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           +++  ED + ++ EM +KG+  +   Y  L+     VG  D A E+F  M SS    PD 
Sbjct: 340 KSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQM-SSRRAPPDI 398

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            T++ ++    C GKV +A  +F  M +   + N+   T +IQ   K  + +D       
Sbjct: 399 RTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCS 458

Query: 472 LPELGITPD 480
           L   G+ P+
Sbjct: 459 LFSKGMKPN 467



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 179/400 (44%), Gaps = 5/400 (1%)

Query: 151 ALTYFTNKLKASK--EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL  FT  + +     +I +   + V  K    D    LF+ M   G+ P   T + ++ 
Sbjct: 67  ALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMH 126

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           C  +++ P +A  +  +M   G +PD +T++S+++ Y     +E A  L+D+     ++ 
Sbjct: 127 CVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKP 186

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           +   ++TLI+      + +  + ++ +M   G +PN++TYN L+  +    R      + 
Sbjct: 187 NVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLL 246

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           ++M    + PN  T+ +L+ A+ +     +   +Y  M +  +   V  Y +L+      
Sbjct: 247 RDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMY 306

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G  DEA ++F  M+ +  C P+   ++++I       +V +   +F EM + G   N   
Sbjct: 307 GLLDEARQMFYLMERN-GCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTIT 365

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV-ECVE 507
            T LIQ Y    R D      N++      PD R    LL+ +    K E   ++ E + 
Sbjct: 366 YTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMR 425

Query: 508 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVK 546
           K    +  V   ++ +   +    ++A +LF S+ SK +K
Sbjct: 426 KREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMK 465



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 131/288 (45%), Gaps = 36/288 (12%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K +    VI +   +  F K   L +A+ L++ M+   V PD  T+ +LI+   M  L +
Sbjct: 251 KRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLD 310

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +A + F  M   GC P+ + Y+++I  + ++  VE    ++     +    +   ++ LI
Sbjct: 311 EARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLI 370

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           + Y   G  D    V+ +M +    P++ TYN LLD                     GL 
Sbjct: 371 QGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLD---------------------GLC 409

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
            N                 E  L ++  M+++ M +++  Y  ++     +G  ++AF++
Sbjct: 410 CNGKV--------------EKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDL 455

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
           F  +  S+  +P+  T+++MI+    RG + EA+++F +M E GF PN
Sbjct: 456 FCSL-FSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPN 502



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 90/178 (50%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++Y   +  F K + ++   ++F +M  +GV  + +T++ LI    +   P+ A E F +
Sbjct: 329 VIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQ 388

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S    PD  TY+ ++D     G VE A  +++  R  +  I+   ++ +I+     G 
Sbjct: 389 MSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGK 448

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            +   +++  + + G+KPN+ITY  ++    R     +  +++K+M ++G  PN + Y
Sbjct: 449 VEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506


>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
 gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
          Length = 668

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 153/347 (44%), Gaps = 41/347 (11%)

Query: 185 ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244
           ERL  D+ +  ++PD   FS LIS      LP+ A+E      + G  P +   +++I A
Sbjct: 213 ERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISA 272

Query: 245 YGRAGNVEMAFGLYDR---ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
            G AG V  A  L+     A   K R    A++ L+K Y   G+      V +EM   GV
Sbjct: 273 LGTAGRVAEAEALFLEFFLAGEIKPRT--RAYNALLKGYVRIGSLKNAEQVLDEMSQCGV 330

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP----------------NWNTYAS 345
            P+  TY+ L+D   RA R    + + KEM  +G+ P                +W    +
Sbjct: 331 APDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFA 390

Query: 346 LLR-------------------AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +LR                    +G+       +  + +M+E+G++  V  +NTL+    
Sbjct: 391 VLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHC 450

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G  D A E+FE+M+ S NC P + T++ MI +   +      EAM +EM E G  PN+
Sbjct: 451 KGGRHDRAAELFEEMRES-NCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNI 509

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
              T+L+  YG++ R  + +  +  +   G+ P       L+N   Q
Sbjct: 510 ITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQ 556



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 145/315 (46%), Gaps = 1/315 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +  + +    + A  L  +M   GVKP +  FS +++  R      KA      M 
Sbjct: 337 YSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQ 396

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  PD   Y+ MID +G+   +  A   +++ R E    D   ++TLI  +   G  D
Sbjct: 397 ASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHD 456

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++EEM+     P   TYN +++ +G  +    V+ +  EM + GL PN  TY +L+
Sbjct: 457 RAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLV 516

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YGR+   ++ +     MK  G++ S T+Y+ L+   A  G  D A  + + MK ++  
Sbjct: 517 DVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMK-ADGL 575

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +      +S+I       +V EA ++   M E G  P++   T+L++   + ++ D V  
Sbjct: 576 EVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPV 635

Query: 468 ALNRLPELGITPDDR 482
               +   G  PD +
Sbjct: 636 IYEEMITSGCAPDRK 650



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 149/335 (44%), Gaps = 39/335 (11%)

Query: 183 KAERLFDDMLDRG-VKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +AE LF +    G +KP    ++ L+    R+ +L N A +  + M   G  PD  TYS 
Sbjct: 281 EAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKN-AEQVLDEMSQCGVAPDEATYSL 339

Query: 241 MIDAYGRAGNVEMA-----------------------FGLYDRARNEKW----------- 266
           ++DAY RAG  E A                        G  DR   +K            
Sbjct: 340 LVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASG 399

Query: 267 -RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
            R D + ++ +I  +G        ++ + +M+  G++P+++T+N L+D   +  R  +  
Sbjct: 400 VRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAA 459

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            +++EM ++   P   TY  ++   G   + E   ++  EMKE+G+  ++  Y TL+ + 
Sbjct: 460 ELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVY 519

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G   EA +  E MK ++  +P    + +++   + RG    A  +   M   G E +
Sbjct: 520 GRSGRYKEAIDCIEAMK-ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVS 578

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           + VL SLI  +G+ +R  +    L  + E G+ PD
Sbjct: 579 ILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPD 613



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 96/250 (38%), Gaps = 70/250 (28%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
            YNV +  F K   L  A   F+ M + G++PD VT++TLI         ++A E FE M
Sbjct: 406 FYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEM 465

Query: 227 PSFGCDP-----------------------------------DALTYSSMIDAYGRAGNV 251
               C P                                   + +TY++++D YGR+G  
Sbjct: 466 RESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRY 525

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV---------- 301
           + A    +  + +  +  P  +  L+  Y   G  D  LNV + MKA G+          
Sbjct: 526 KEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSL 585

Query: 302 -------------------------KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
                                    +P++ITY  L+  + R ++  +V  IY+EM  +G 
Sbjct: 586 INAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGC 645

Query: 337 SPNWNTYASL 346
           +P+    A L
Sbjct: 646 APDRKARAML 655



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 118/262 (45%), Gaps = 13/262 (4%)

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR---EMKEKGMQLSVTLYNTLLAMCAD 387
           + ++   P+  +Y+ LL +    R   D   + R   +++E  ++    L++ L++  A 
Sbjct: 181 LREHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFAR 240

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNL 446
               D A E+    ++     P S   +++I+     G+V+EAEA+F E   AG  +P  
Sbjct: 241 AALPDAALELLASAQAI-GLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRT 299

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVEC 505
               +L++ Y +     +  + L+ + + G+ PD+     L++  T+  + E  + L++ 
Sbjct: 300 RAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKE 359

Query: 506 VEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSISKDVK--KAYCNCLIDLCVNLNL 562
           +E    K   YV   +L      GD++K    L    +  V+  + + N +ID     N 
Sbjct: 360 MEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNC 419

Query: 563 LENAC----KLLELGLTLEVYT 580
           L +A     K+ E G+  +V T
Sbjct: 420 LGHAMDAFNKMREEGIEPDVVT 441



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 60/140 (42%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I Y   + V+ +     +A    + M   G+KP    +  L++      L + A+   +
Sbjct: 509 IITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVK 568

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M + G +   L  +S+I+A+G    V  AF +    R    R D   ++TL+K      
Sbjct: 569 AMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVE 628

Query: 285 NFDGCLNVYEEMKAIGVKPN 304
            FD    +YEEM   G  P+
Sbjct: 629 QFDKVPVIYEEMITSGCAPD 648


>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 569

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 149/313 (47%), Gaps = 1/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +K +     L+KAE +F +M   G+ P  + ++  I        P +AVE F+RM 
Sbjct: 186 YALLLKAYCTSGLLEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMK 245

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C P   TY+ +I+ +G+A    MA  L++  R++K + +   ++ L+  +   G  +
Sbjct: 246 RDCCQPSTETYTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCE 305

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++E+++  G +P++  YN L++   RA  P+    I+  M   G  P+  +Y  ++
Sbjct: 306 KAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMV 365

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            AYGR    ED  +V+ EMK  G+  ++  +  LL+  +  G   +  +I  ++  S   
Sbjct: 366 DAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHES-GL 424

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD++  +SM+ +    G+  + E +   M    +  ++     LI  YG+A   + +  
Sbjct: 425 EPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRAGFFEKMEG 484

Query: 468 ALNRLPELGITPD 480
               L    + PD
Sbjct: 485 LFQSLAAKNLKPD 497



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 155/313 (49%), Gaps = 4/313 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+++N+ +  + +      AE  + ++++    P   T++ L+     + L  KA   F
Sbjct: 147 DVMIFNLVIDAYGRKSLYKMAETTYFELIEARCIPTEDTYALLLKAYCTSGLLEKAEAIF 206

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M  +G  P A+ Y++ ID   +AGN + A  ++ R + +  +     ++ LI L+G A
Sbjct: 207 AEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYTLLINLHGKA 266

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                 L ++ EM++   KPN+ TY  L++   R     + + I++++ ++G  P+   Y
Sbjct: 267 SQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAY 326

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ AY RA +      ++  M+  G +     YN ++      G  ++A  +FE+MK 
Sbjct: 327 NALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKR 386

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---Q 460
                P   +   +++  S  G V++ E + NE+ E+G EP+ FVL S++  YG+     
Sbjct: 387 L-GITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFG 445

Query: 461 RTDDVVRALNRLP 473
           + ++V+ A+   P
Sbjct: 446 KMEEVLTAMESGP 458



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 145/306 (47%), Gaps = 9/306 (2%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           +++N       + +AL  F N++++ K    +  Y   +  F +    +KAE +F+ + +
Sbjct: 258 LLINLHGKASQSYMALKLF-NEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQE 316

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
            G +PD   ++ L+        P  A E F  M   GC+PD  +Y+ M+DAYGR G  E 
Sbjct: 317 DGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHED 376

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKL--YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           A  +++  +  +  I P   S ++ L  Y  AG+   C ++  E+   G++P+    N++
Sbjct: 377 AQAVFEEMK--RLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSM 434

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           L+  GR  +  +++ +   M     + + +TY  L+  YGRA + E    +++ +  K +
Sbjct: 435 LNLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNL 494

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
           +  V  + + L   +      +  EIFE+M  +  C PD  T   +++ CS   ++ +  
Sbjct: 495 KPDVVTWTSRLGAYSRKKLYTKCLEIFEEMIDA-GCHPDGRTAKVLLSSCSSEDQIEQVT 553

Query: 432 AMFNEM 437
            +   M
Sbjct: 554 TVIRTM 559



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 150/307 (48%), Gaps = 4/307 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + + +  K      A +LF++M  +  KP+  T++ L++      L  KA E FE++ 
Sbjct: 256 YTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQ 315

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G +PD   Y+++++AY RAG    A  ++   ++     D  +++ ++  YG  G  +
Sbjct: 316 EDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHE 375

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V+EEMK +G+ P M ++  LL    +A    + + I  E+ ++GL P+     S+L
Sbjct: 376 DAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSML 435

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YGR         V   M+       ++ YN L+ +    G+ ++   +F+ + +++N 
Sbjct: 436 NLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRAGFFEKMEGLFQSL-AAKNL 494

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN---LFVLTSLIQCYGKAQRTDD 464
           +PD  T++S +   S +   ++   +F EM++AG  P+     VL S      + ++   
Sbjct: 495 KPDVVTWTSRLGAYSRKKLYTKCLEIFEEMIDAGCHPDGRTAKVLLSSCSSEDQIEQVTT 554

Query: 465 VVRALNR 471
           V+R +++
Sbjct: 555 VIRTMHK 561


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 177/374 (47%), Gaps = 2/374 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ +  F +C     A  +   ++  G +PD  TF+TLI    +    ++AV   +RM  
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE 186

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            GC PD +TY+S+++   R+G+  +A  L  +      + D   +ST+I      G  D 
Sbjct: 187 NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDA 246

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            +++++EM+  G+K +++TYN+L+  + +A +      + K+M    + PN  T+  LL 
Sbjct: 247 AISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLD 306

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            + +    ++   +Y+EM  +G+  ++  YNTL+          EA  +  D+     C 
Sbjct: 307 VFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML-DLMVRNKCS 365

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD  TF+S+I       +V +   +F  + + G   N    + L+Q + ++ +       
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIE 527
              +   G+ PD    G LL+ +    K E+  ++ E ++KS   LG V+   + E   +
Sbjct: 426 FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCK 485

Query: 528 GDFKKEATELFNSI 541
           G   ++A  LF S+
Sbjct: 486 GGKVEDAWNLFCSL 499



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 150/325 (46%), Gaps = 3/325 (0%)

Query: 156 TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
           T  +K+S  V+ YN  ++   K    +    L  DM+ R + P+ +TF+ L+        
Sbjct: 256 TKGIKSS--VVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGK 313

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
             +A E ++ M + G  P+ +TY++++D Y     +  A  + D     K   D   F++
Sbjct: 314 LQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTS 373

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LIK Y      D  + V+  +   G+  N +TY+ L+    ++ +    + +++EM  +G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           + P+  TY  LL         E  L ++ ++++  M L + +Y T++      G  ++A+
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            +F  +   +  +P+  T++ MI+    +G +SEA  +  +M E G  PN     +LI+ 
Sbjct: 494 NLFCSL-PCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552

Query: 456 YGKAQRTDDVVRALNRLPELGITPD 480
           + +        + +  +   G + D
Sbjct: 553 HLRDGDLTASAKLIEEMKSCGFSAD 577



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 139/299 (46%), Gaps = 1/299 (0%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D A  LF +M+     P  V FS   S        N  +++ +++   G   +  T + M
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I+ + R      A+ +  +     +  D   F+TLIK     G     + + + M   G 
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           +P+++TYN++++ + R+        + ++M +  +  +  TY++++ +  R    +  +S
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           +++EM+ KG++ SV  YN+L+      G  ++   + +DM S E   P+  TF+ ++ + 
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE-IVPNVITFNVLLDVF 308

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              GK+ EA  ++ EM+  G  PN+    +L+  Y    R  +    L+ +     +PD
Sbjct: 309 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 113/236 (47%), Gaps = 1/236 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S +++ +   +K +   + +D   ++F ++  RG+  + VT+S L+     +     A
Sbjct: 363 KCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 422

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
            E F+ M S G  PD +TY  ++D     G +E A  +++  +  K  +    ++T+I+ 
Sbjct: 423 EELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
               G  +   N++  +   GVKPN++TY  ++  + +     +   + ++M ++G +PN
Sbjct: 483 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
             TY +L+RA+ R      +  +  EMK  G     +    ++ M    G  D++F
Sbjct: 543 DCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLS-GELDKSF 597



 Score = 39.7 bits (91), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 70/145 (48%), Gaps = 2/145 (1%)

Query: 137 IILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+L+ + +      AL  F +  K K    +++Y   ++   K   ++ A  LF  +  +
Sbjct: 443 ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK 502

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           GVKP+ +T++ +IS        ++A     +M   G  P+  TY+++I A+ R G++  +
Sbjct: 503 GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTAS 562

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKL 279
             L +  ++  +  D ++   +I +
Sbjct: 563 AKLIEEMKSCGFSADASSIKMVIDM 587


>gi|410110101|gb|AFV61130.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           viburnoides]
          Length = 337

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 161/319 (50%), Gaps = 9/319 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 21  DLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLLTMYVENKKFLEALSVF 80

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 81  SEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 138

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 139 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 198

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G ++   L+ T++      G    A  +  ++
Sbjct: 199 TYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKRLLHEL 258

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 259 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKK 313

Query: 462 TDDVVRALNRLPELGITPD 480
             +VV   +++  LG  PD
Sbjct: 314 YSNVVEVFDKMRGLGYFPD 332



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 92/196 (46%), Gaps = 4/196 (2%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 146 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 205

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 206 IWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 261

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 262 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVF 321

Query: 329 KEMTDNGLSPNWNTYA 344
            +M   G  P+ +  A
Sbjct: 322 DKMRGLGYFPDSDVIA 337


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 180/381 (47%), Gaps = 7/381 (1%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDML 192
           C  +L+       A  A   F N L    S + I Y+  +  F K RD  +A RL D+M 
Sbjct: 1   CNCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEME 60

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
            RG+ P N  ++T+I     N   + A+  +  M    C P  +TY+ ++DA  ++  + 
Sbjct: 61  KRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRH-CAPSVITYTILVDALCKSARIS 119

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  + +         +   ++TLI  +   GN D  + ++ +M      P++ TYN L+
Sbjct: 120 DASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILI 179

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           D   + +RP     + +EM   G  PN+ TY +L+ +  ++    D  ++ + M  +  +
Sbjct: 180 DGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCK 239

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAE 431
            S   +N ++ M   VG  D A+E+F+ M +   C PD +T++ MI+  +CR  ++ +A 
Sbjct: 240 PSHFTFNLMIDMFCKVGQLDLAYELFQLM-TDRGCLPDIYTYNIMISG-ACRANRIDDAR 297

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            +   M EAG  P++    S++    KA + D+       L   G   D   C  L++ +
Sbjct: 298 QLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGL 357

Query: 492 TQTPK-EELGKLVECVEKSNS 511
            ++ + ++  KL+  +E++ S
Sbjct: 358 CKSRRLDDAEKLLREMERNGS 378



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 146/313 (46%), Gaps = 1/313 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +  F K  ++D+A  LF+ ML+    PD  T++ LI        P    +  +
Sbjct: 137 VVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQ 196

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M  +GC+P+ +TY++++D+  ++G    AF L         +     F+ +I ++   G
Sbjct: 197 EMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVG 256

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D    +++ M   G  P++ TYN ++    RA R    + + + MT+ G  P+  TY 
Sbjct: 257 QLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYN 316

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           S++    +A   ++   VY  ++  G  L V   +TL+         D+A ++  +M+ +
Sbjct: 317 SIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERN 376

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            +  PD   ++ +I       ++ ++ A F+EML+ G  P +   + +I    K+ R  D
Sbjct: 377 GS-APDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRD 435

Query: 465 VVRALNRLPELGI 477
               L  + E G+
Sbjct: 436 GCMLLKTMLERGV 448



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 83/173 (47%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++  YN+ +    +   +D A +L + M + G  PD VT+++++S     +  ++A E +
Sbjct: 276 DIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVY 335

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E + + G   D +T S++ID   ++  ++ A  L           D  A++ LI  +  A
Sbjct: 336 EVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKA 395

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
              D  L  + EM   G  P +ITY+ ++D + ++ R      + K M + G+
Sbjct: 396 DQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448


>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 150/315 (47%), Gaps = 1/315 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +  + +    + A  L  +M   GVKP +  FS +++  R      KA      M 
Sbjct: 342 YSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMH 401

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  PD   Y+ MID +G+   +  A  +++R R E    D   ++TLI  +   G  D
Sbjct: 402 ASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHD 461

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + +++EM+     P   TYN +++ +G  +R   V+T+  EM + GL PN  TY +L+
Sbjct: 462 CAMELFKEMRESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLV 521

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YGR+   ++ +     MK  G++ S T+Y+ L+   A  G  D A  + + M+ ++  
Sbjct: 522 DVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMR-ADGL 580

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +  +   +S+I       +V EA ++   M E  F P++   T+L++   + ++ D V  
Sbjct: 581 EASTVVLNSLINAFGEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKALIRVEQFDKVPV 640

Query: 468 ALNRLPELGITPDDR 482
               +   G  PD +
Sbjct: 641 IYEEMITSGCAPDRK 655



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 153/347 (44%), Gaps = 41/347 (11%)

Query: 185 ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244
           ERL  D+ D  ++PD   FS LIS      LP+ A+E      + G  P +   +++I A
Sbjct: 218 ERLLGDLRDSRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISA 277

Query: 245 YGRAGNVEMAFGLYDR---ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
            G AG V  A  L+     A   K R    A++ L+K Y   G+     +V +EM   GV
Sbjct: 278 LGIAGRVPEAEALFLEFFLAGEIKPRT--RAYNALLKGYVKIGSLKNAEHVLDEMSECGV 335

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP----------------NWNTYAS 345
            P+  TY+ L+D   RA R    + + KEM  +G+ P                +W    +
Sbjct: 336 APDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFA 395

Query: 346 LLR-------------------AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +LR                    +G+       + V+  M+ +G++  V  +NTL+    
Sbjct: 396 VLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHC 455

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G  D A E+F++M+ S NC P + T++ MI +   + +    E M +EM E G  PN+
Sbjct: 456 KGGRHDCAMELFKEMRES-NCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNI 514

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
              T+L+  YG++ R  + +  +  +   G+ P       L+N   Q
Sbjct: 515 ITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQ 561



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 97/250 (38%), Gaps = 70/250 (28%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS---------CAR------ 211
            YNV +  F K   L  A  +F+ M   G++PD VT++TLI          CA       
Sbjct: 411 FYNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEM 470

Query: 212 --------------MNNLPNKAVEW------FERMPSFGCDPDALTYSSMIDAYGRAGNV 251
                         M NL  +   W         M   G  P+ +TY++++D YGR+G  
Sbjct: 471 RESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRY 530

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV---------- 301
           + A    +  + +  +  P  +  L+  Y   G  D  LNV + M+A G+          
Sbjct: 531 KEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSL 590

Query: 302 -------------------------KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
                                    +P++ITY  L+  + R ++  +V  IY+EM  +G 
Sbjct: 591 INAFGEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGC 650

Query: 337 SPNWNTYASL 346
           +P+    A L
Sbjct: 651 APDRKARAML 660



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 108/244 (44%), Gaps = 9/244 (3%)

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR---EMKEKGMQLSVTLYNTLLAMCAD 387
           + ++   P+  +Y+ LL +    R   D   + R   ++++  ++    L++ L++  A 
Sbjct: 186 IREHNFLPDLASYSHLLASLLNTRDPPDAAILERLLGDLRDSRLEPDAPLFSDLISAFAR 245

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNL 446
               D A E+    ++     P S   +++I+     G+V EAEA+F E   AG  +P  
Sbjct: 246 AALPDAALELLASAQAI-GLTPRSNAVTALISALGIAGRVPEAEALFLEFFLAGEIKPRT 304

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVEC 505
               +L++ Y K     +    L+ + E G+ PD+     L++  T+  + E  + L++ 
Sbjct: 305 RAYNALLKGYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRWESARILLKE 364

Query: 506 VEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSISKDVK--KAYCNCLIDLCVNLNL 562
           +E    K   YV   +L      GD++K    L    +  V+  + + N +ID     N 
Sbjct: 365 MEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNC 424

Query: 563 LENA 566
           L +A
Sbjct: 425 LGHA 428



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 61/140 (43%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I Y   + V+ +     +A    + M   G+KP    +  L++      L + A+   +
Sbjct: 514 IITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVK 573

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M + G +   +  +S+I+A+G    V  AF +    +   +R D   ++TL+K      
Sbjct: 574 AMRADGLEASTVVLNSLINAFGEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKALIRVE 633

Query: 285 NFDGCLNVYEEMKAIGVKPN 304
            FD    +YEEM   G  P+
Sbjct: 634 QFDKVPVIYEEMITSGCAPD 653


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 164/349 (46%), Gaps = 10/349 (2%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV-KPDNVTFSTL 206
           AA+ L    ++     E   YN  + +         A  LF+  +  G+  PD  +F+ +
Sbjct: 165 AAVTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVV 224

Query: 207 I-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           I    R+ N   KA+E  ERM  FGC PD +T++ ++D   RA  V     L  R + + 
Sbjct: 225 IKGVCRVGNF-QKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDG 283

Query: 266 WRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
             + PN   ++++I  Y  AG  +  L+VY +M   G +PN +TYN L++  G+A     
Sbjct: 284 VCM-PNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMES 342

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
              +Y+++      P+  T++SL+  Y R    +D + +++EM +  +Q +V  ++ ++ 
Sbjct: 343 AVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIH 402

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
                  + EA     ++    +  P ++ ++ +I I    G+V EA  +  +M E G  
Sbjct: 403 SLCKQNRSAEALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCH 462

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----DRFCGCLL 488
           P+ +  T LI  +    R  + +   +++ E G  PD    + F  C+L
Sbjct: 463 PDKYTYTILIIGHCMKGRIPEAITLFHKMVETGCRPDKITVNSFISCVL 511



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 177/383 (46%), Gaps = 17/383 (4%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +V   + R  R  D A +LFD M D+ G  PD V FS +        L + AV    +  
Sbjct: 116 HVITLLCRSGRHRD-ALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAVTLLTKAS 174

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR-ARNEKWRIDPNAFSTLIKLYGTAGNF 286
            FG   +   Y+++++     G  + A  L++   ++  +  D  +F+ +IK     GNF
Sbjct: 175 QFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNF 234

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYAS 345
              L + E M   G  P+ IT+N L+D + RAK+  +   + + +  +G+  PN  TY S
Sbjct: 235 QKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTS 294

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++  Y +A   ED LSVY +M E G + +   YN L+         + A  ++  +    
Sbjct: 295 VISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQL-ILR 353

Query: 406 NCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            C PD  TFSS+I   C C G++ +A  ++ EM +   +PN++  + +I    K  R+ +
Sbjct: 354 RCPPDVVTFSSLIDGYCRC-GQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAE 412

Query: 465 VVRALNRLPELG----ITPDDRFCGCLLNVMTQTPKEELGKLV--ECVEKSNSKLGYVVK 518
              AL  L EL     I P       +++++ +  + E   L+  +  EK      Y   
Sbjct: 413 ---ALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYT 469

Query: 519 LLLEEQDIEGDFKKEATELFNSI 541
           +L+    ++G    EA  LF+ +
Sbjct: 470 ILIIGHCMKGRI-PEAITLFHKM 491



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 104/236 (44%), Gaps = 3/236 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y   +  + K   ++ A  +++DML+ G +P+ VT++ LI+          AV  + 
Sbjct: 289 VVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYR 348

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           ++    C PD +T+SS+ID Y R G ++ A  ++        + +   FS +I       
Sbjct: 349 QLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQN 408

Query: 285 NFDGCLNVYEE--MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
                L    E  M+A  + P    YN ++D + +  +  +   I  +M + G  P+  T
Sbjct: 409 RSAEALGFLRELNMRA-DIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYT 467

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           Y  L+  +       + ++++ +M E G +      N+ ++     G  +E  +I 
Sbjct: 468 YTILIIGHCMKGRIPEAITLFHKMVETGCRPDKITVNSFISCVLKAGMPNEVDQIM 523



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 6/139 (4%)

Query: 117 DDVFSVLRCLGDDFLEQDCV---IILNNMTNPDTAALALTYFTN---KLKASKEVILYNV 170
           DD   + + +G   ++ +     II++++   + +A AL +      +   + +  +YN 
Sbjct: 376 DDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYNP 435

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
            + +  K   +++A  +  DM ++G  PD  T++ LI    M     +A+  F +M   G
Sbjct: 436 VIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVETG 495

Query: 231 CDPDALTYSSMIDAYGRAG 249
           C PD +T +S I    +AG
Sbjct: 496 CRPDKITVNSFISCVLKAG 514


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 154/318 (48%), Gaps = 1/318 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V +Y   +  + + RD++ A    ++ML +G++ +   F ++IS          A  WFE
Sbjct: 52  VHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFE 111

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +  +    P  + Y+S++ AY +AGN+E    L  +   E ++ +   ++T++  +    
Sbjct: 112 KFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIR 171

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           + + CL+ +  +KA G+ P   TY  ++    +A    +   I +EM  +G+SPN   YA
Sbjct: 172 DEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYA 231

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            ++  Y R         V+ +M   G++  + +YN L+      G  D+A  + E+++++
Sbjct: 232 MIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEAN 291

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               P   T++S++      G + +A  +F+ +  AG  P +    SL+    KA++ ++
Sbjct: 292 R-LLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMEN 350

Query: 465 VVRALNRLPELGITPDDR 482
               LN +   G+ P++R
Sbjct: 351 ARLMLNEMLANGVVPNER 368



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 159/348 (45%), Gaps = 36/348 (10%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           C++ L         AL +    +K   S   ++Y + M  + +  D   A ++++DM+  
Sbjct: 197 CIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSA 256

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G+KPD V ++ L+         +KA+   E + +    P   TY+S++D Y + GN++ A
Sbjct: 257 GLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKA 316

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             ++DR                                   +K  G++P +++YN+LL  
Sbjct: 317 LEVFDR-----------------------------------IKTAGLRPGVVSYNSLLSG 341

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           + +A++    + +  EM  NG+ PN  +Y +L   Y RA   E    +++ MK++ + + 
Sbjct: 342 LAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAID 401

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           +  Y  LL  C   G    A E+F+ +  +   + +  T+ +M+   + +G++S+A  + 
Sbjct: 402 IVAYGALLKACCKSGAMQRAAEVFQQITDA-GLKHNRITYCTMLDGWARKGELSKARDLL 460

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           N+M + GF  +    TS I+   ++  T++V   L  + E  +  + R
Sbjct: 461 NDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNAR 508



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 120/245 (48%), Gaps = 3/245 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERM 226
           Y   +  + K  ++ KA  +FD +   G++P  V++++L+S  A+   + N  +     M
Sbjct: 300 YTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARL-MLNEM 358

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            + G  P+  +Y+++ + Y RAG+VE AFG++ R + E   ID  A+  L+K    +G  
Sbjct: 359 LANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAM 418

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                V++++   G+K N ITY  +LD   R     + + +  +M  +G   +   Y S 
Sbjct: 419 QRAAEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSF 478

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           ++A  R+   E+       M+EK ++++   Y TL+         D+A   +E  K+S  
Sbjct: 479 IKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKAS-G 537

Query: 407 CQPDS 411
            Q DS
Sbjct: 538 LQLDS 542



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 119/257 (46%), Gaps = 1/257 (0%)

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           FE M +    P+   Y+S+I AY  A ++E A    +   ++  +++   F ++I  Y +
Sbjct: 40  FEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYAS 99

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           AGN +   + +E+ KA  + P  I YN+++    +A     V+ +  +M + G   N   
Sbjct: 100 AGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGL 159

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y ++L  +   R  E  LS +  +K  G+  +   Y  ++ +    G   +A +I E+M 
Sbjct: 160 YTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEM- 218

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
                 P+   ++ ++   +  G  + A  ++ +M+ AG +P++ +   L+  + KA R 
Sbjct: 219 DKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRM 278

Query: 463 DDVVRALNRLPELGITP 479
           D  +  L  +    + P
Sbjct: 279 DKALGVLENIEANRLLP 295



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 95/193 (49%), Gaps = 1/193 (0%)

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           KP +  Y  L+D   R       +  ++ M  + + PN + Y SL+ AY  AR  E  ++
Sbjct: 14  KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVA 73

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
              EM  +G+QL+  ++ ++++  A  G  + A   FE  K +EN  P    ++S++   
Sbjct: 74  CTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFK-AENLVPGGIVYNSIVQAY 132

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
              G +   EA+  +M E GF+ NL + T+++  + + +  +  +   +RL   G++P  
Sbjct: 133 CQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTA 192

Query: 482 RFCGCLLNVMTQT 494
              GC++ + T+ 
Sbjct: 193 ATYGCIVKLFTKA 205



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 138/320 (43%), Gaps = 22/320 (6%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           P    Y  ++D Y R G+   A   ++  R    + + + +++LI  Y  A + +G +  
Sbjct: 15  PVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVAC 74

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
            EEM + G++ N   + +++     A      +  +++     L P    Y S+++AY +
Sbjct: 75  TEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQ 134

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
           A   E   ++  +M+E+G Q ++ LY T+L   A++   ++    F  +K+     P + 
Sbjct: 135 AGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKAC-GLSPTAA 193

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T+  ++ + +  G +++A  +  EM + G  PN  +   ++  Y +        +    +
Sbjct: 194 TYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDM 253

Query: 473 PELGITPD--------DRFC--GCLLNVMTQTPKEELGKLVECVEKSNSKL-GYVVKLLL 521
              G+ PD          FC  G +   +      E  +L+  +E   S L GYV     
Sbjct: 254 VSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYV----- 308

Query: 522 EEQDIEGDFKKEATELFNSI 541
                +G   ++A E+F+ I
Sbjct: 309 -----KGGNIQKALEVFDRI 323


>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
 gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
          Length = 690

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 169/356 (47%), Gaps = 9/356 (2%)

Query: 146 DTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDM--LDRGVKPDNV 201
           D   +A  Y   +  AS   +V+ Y + +    K   +  A R+ D M   D  ++PD V
Sbjct: 151 DVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVV 210

Query: 202 TFSTLISCARMNNLPNKAVEWFE-RMPSF-GCDPDALTYSSMIDAYGRAGNVEMAFGLYD 259
           T +T++     +    +A+ + E RM S  GC P+ +TY+ +IDA+ R GN+ MA+ L +
Sbjct: 211 TLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVE 270

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGR 317
           +  NE    +    +T++     AG     L  + E + +    K N +TY+ L+  +  
Sbjct: 271 KMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLH 330

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
                    ++ E    G SP+   Y +++    +A   ED  S+   MKE G +L    
Sbjct: 331 TNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKA 390

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           YN L+A         EA+E+ ++MK     +PD  T++++++     G  +  + +  +M
Sbjct: 391 YNILIAGFCRKKRLHEAYELLQEMKEV-GIRPDVCTYNTLLSGSCKAGDFAAVDELLGKM 449

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           ++ G +P++    +L+  Y K  + D+ +R L  + E GI P++     L++ + +
Sbjct: 450 IDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCK 505



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 126/258 (48%), Gaps = 1/258 (0%)

Query: 197 KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256
           K + VT+STL+      N    A+E F    S G  PDA+ Y +MI    +AG +E A  
Sbjct: 315 KGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACS 374

Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           +    +   +++D  A++ LI  +           + +EMK +G++P++ TYN LL    
Sbjct: 375 MASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSC 434

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +A     V  +  +M D+G  P+  T+ +L+  Y +    ++ L + R M E G+  +  
Sbjct: 435 KAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNV 494

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
           +YNTL+      G  D A E+F++MK  ++   +  TF++++     +    +A  + ++
Sbjct: 495 IYNTLIDFLCKRGDVDLAIELFDEMK-EKSVPANVTTFNALLKGLRDKNMPEKAFELMDQ 553

Query: 437 MLEAGFEPNLFVLTSLIQ 454
           M E    P+   +  L++
Sbjct: 554 MREERCFPDYVTVDVLME 571



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 129/284 (45%), Gaps = 9/284 (3%)

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
           S L + AR+ ++P  A  +          PD +TY  +++   +AG V  A  + D    
Sbjct: 141 SILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSR 200

Query: 264 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEE-MKAI-GVKPNMITYNNLLDTMGRAK 319
           +   I P+    +T++     +G     L   E+ M ++ G  PN +TYN L+D   R  
Sbjct: 201 QDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVG 260

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK---EKGMQLSVT 376
                  + ++M + G+  N  T  +++    RA      L  +RE +    +G   +VT
Sbjct: 261 NISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVT 320

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            Y+TL+           A E+F + K SE   PD+  + +MI+  +  G++ +A +M + 
Sbjct: 321 -YSTLVGALLHTNNVGMAMELFHE-KMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASS 378

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           M EAGF+ +      LI  + + +R  +    L  + E+GI PD
Sbjct: 379 MKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPD 422


>gi|410110137|gb|AFV61148.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rubella]
          Length = 440

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 163/328 (49%), Gaps = 9/328 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 84  DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVF 143

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+    + A  L+   R  K  I+P+  +F+TL+++YG
Sbjct: 144 SEMREIKCLLDLTTCNIMIDVYGQLSMAKEADKLFWGMR--KMGIEPSVVSFNTLLRVYG 201

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++  ++TYN+++   G+     +   + +EM   G+ PN  
Sbjct: 202 DAELFGEAIHLFRLMQRKNIEQTVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSI 261

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+++   L+ T++      G    A  +  ++
Sbjct: 262 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 321

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I    K ++
Sbjct: 322 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKK 376

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             +VV   +++  LG  PD      +LN
Sbjct: 377 YSNVVEVFDKMRGLGYFPDSNVIAVVLN 404



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 140/294 (47%), Gaps = 1/294 (0%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LFD+M  R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           +  +   A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           +Y+ LL      K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLSMAKEADKLFWGM 181

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           ++ G++ SV  +NTLL +  D     EA  +F  M+  +N +    T++SMI I     +
Sbjct: 182 RKMGIEPSVVSFNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQTVVTYNSMIMIYGKTLE 240

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             +A  +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 294



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 114/236 (48%), Gaps = 4/236 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  + ++ K  + +KA  L  +M  RG++P+++T+ST+IS
Sbjct: 209 AIHLFRLMQRKNIEQTVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIIS 268

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + + +MI AY RAG V  A     R  +E  R 
Sbjct: 269 IWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA----KRLLHELKRP 324

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++  + + K+   V  ++
Sbjct: 325 DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVF 384

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
            +M   G  P+ N  A +L AYG+ +  +    VY EM+E G   S  ++  +L++
Sbjct: 385 DKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQEVGCVFSDEVHFQMLSL 440



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 1/205 (0%)

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +     +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  + 
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
           T Y+TLL M  +     EA  +F +M+  + C  D  T + MI +        EA+ +F 
Sbjct: 121 TSYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLSMAKEADKLFW 179

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQ 460
            M + G EP++    +L++ YG A+
Sbjct: 180 GMRKMGIEPSVVSFNTLLRVYGDAE 204


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 190/404 (47%), Gaps = 13/404 (3%)

Query: 104 KLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNP-------DTAALALTYFT 156
           KL A   + ++  D    + + + + F  Q  +   N++ N        D A     YF 
Sbjct: 57  KLVAHAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFE 116

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
             +  S  +  YN+ +K+  + +  DKA+ L + M  +G  PD  ++ TLI+    N   
Sbjct: 117 T-MGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYM 175

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFS 274
           + A++ F+ MP  G  PD   Y+ +ID + + G++  A  +++R       + PN  +++
Sbjct: 176 SDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGP-SVYPNIPSYN 234

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            +I      G FD    ++  MK      ++ TY+ L+  +  +        +YKEM +N
Sbjct: 235 VMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAEN 294

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G+SP+   Y ++L  Y RA   E+ L +++ M+++G + +V  YN L+    +    DEA
Sbjct: 295 GVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEA 353

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
             I+E +   ++C  DS T+  ++      G +++A ++  E      + + F  +S+I 
Sbjct: 354 ISIWE-LLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMIN 412

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
              +  R D+V   L+++ + G  P+   C  ++N   +  K E
Sbjct: 413 GLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLE 456



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 151/320 (47%), Gaps = 1/320 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           +  + V+ YN+ ++   +   +D+A  +++ + ++    D++T+  L+     N   NKA
Sbjct: 329 EGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKA 388

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           +   E   +   D D   YSSMI+   R G ++   G+ D+      + +P   + +I  
Sbjct: 389 LSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVING 448

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +  A   +  L  +  M + G  P ++TYN L++ + +A+R  +   + KEM   G  PN
Sbjct: 449 FVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPN 508

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY+ L+    + +  +  L+++ +  EKG +  V ++N ++      G  ++A +++ 
Sbjct: 509 MITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYS 568

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +MK   NC P+  T ++++           A  +++ +L+ G +P++      ++     
Sbjct: 569 EMK-QRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSC 627

Query: 460 QRTDDVVRALNRLPELGITP 479
            R  D V  LN   + G+ P
Sbjct: 628 HRISDAVGFLNDAVDRGVLP 647



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 132/297 (44%), Gaps = 43/297 (14%)

Query: 213 NNLPNKAVEWFERMPS-FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
           N++P++A++ F+RM   FGC P   +Y+S+++A                  + KW     
Sbjct: 66  NSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNAL---------------IESNKW----- 105

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
                          D   + +   + +G+ PN+ TYN L+    R K+  + K +   M
Sbjct: 106 ---------------DEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWM 150

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G SP+  +Y +L+ +  +  Y  D L ++ EM E+G+   V  YN L+      G  
Sbjct: 151 WGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDI 210

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
             A EI+E +    +  P+  +++ MI  +C C GK  E+  +++ M +     +L+  +
Sbjct: 211 LNASEIWERLLKGPSVYPNIPSYNVMINGLCKC-GKFDESFEIWHRMKKNERGQDLYTYS 269

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
           +LI     +   D   R    + E G++PD      +LN   +      G++ EC+E
Sbjct: 270 TLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRA-----GRIEECLE 321



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 146/331 (44%), Gaps = 2/331 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YNV +    KC   D++  ++  M       D  T+STLI     +   + A   ++ M 
Sbjct: 233 YNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMA 292

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++M++ Y RAG +E    L+     E  R    +++ LI+        D
Sbjct: 293 ENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVD 351

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             ++++E +       + +TY  L+  + +     +  +I +E  +     +   Y+S++
Sbjct: 352 EAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMI 411

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               R    ++   V  +M + G + +  + N ++         ++A   F +M  S+ C
Sbjct: 412 NGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNM-VSKGC 470

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P   T++++I   S   + SEA A+  EML+ G++PN+   + L+    + ++ D  + 
Sbjct: 471 FPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALN 530

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
              +  E G  PD +    +++ +  + K E
Sbjct: 531 LWCQALEKGFKPDVKMHNIIIHGLCSSGKVE 561



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 112/247 (45%), Gaps = 2/247 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +  F +   L+ A R F +M+ +G  P  VT++TLI+        ++A    + M  
Sbjct: 443 NAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQ 502

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  P+ +TYS +++   +   ++MA  L+ +A  + ++ D    + +I    ++G  + 
Sbjct: 503 KGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVED 562

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L +Y EMK     PN++T+N L++   + +   +   I+  +   GL P+  +Y   L+
Sbjct: 563 ALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLK 622

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENC 407
                    D +    +  ++G+  +   +N L+    A  GY +  F +   MK +   
Sbjct: 623 GLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVQGYLALKGYMEPVF-VPASMKGNPGM 681

Query: 408 QPDSWTF 414
           Q   + F
Sbjct: 682 QMRYFGF 688


>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like, partial [Cucumis sativus]
          Length = 594

 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 174/388 (44%), Gaps = 39/388 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ +N+ +  ++      KA   F+ M    ++PD  T + +I C        +A+E F
Sbjct: 39  DLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIF 98

Query: 224 ERM--PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             M      C PD +T++S+I  Y   G +E    ++     E  + +  +++ LI  Y 
Sbjct: 99  SSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYA 158

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
           + G      +V++EMK  G  P++++Y +L+ T GR+++P + + ++  M  N   PN  
Sbjct: 159 SHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLV 218

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA--------------- 386
           +Y +L+ AYG   Y    + + REM++ G+  +V    TLLA C                
Sbjct: 219 SYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAA 278

Query: 387 --------------------DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
                               ++G  ++A  ++  M+ ++  +PDS TF+ +I+ C    K
Sbjct: 279 ELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSME-NKTTKPDSVTFTILISGCCRMSK 337

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
             EA   F EML+     +  + +S+I  Y K  +        N L   G  PD      
Sbjct: 338 YEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTA 397

Query: 487 LLNVMTQTPK-EELGKLVECVEKSNSKL 513
           ++N  + +   E++  L + +E +N +L
Sbjct: 398 MINAYSASEMWEKVCALYQEMEANNIQL 425



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 154/325 (47%), Gaps = 1/325 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   + ++     ++  + +F  ML  G+KP+ V+++ LIS    + +  +A   F
Sbjct: 111 DVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVF 170

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   G  PD ++Y+S+I  +GR+     A  ++D  +  K + +  +++ L+  YG+ 
Sbjct: 171 DEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSN 230

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     +++  EM+  G+ PN+++   LL   GR  +   + ++       G+  N    
Sbjct: 231 GYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIAC 290

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S + +Y      E  +++YR M+ K  +     +  L++ C  +   +EA   F++M  
Sbjct: 291 NSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLD 350

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                  S  +SSMI   S +G++ +AE++FN +  +G  P+L   T++I  Y  ++  +
Sbjct: 351 LR-IPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWE 409

Query: 464 DVVRALNRLPELGITPDDRFCGCLL 488
            V      +    I  D   C  L+
Sbjct: 410 KVCALYQEMEANNIQLDSIACSALM 434



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 1/181 (0%)

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           + P+  T+NNL++  G      +   + K+MTDNG+ P+  T+  +L AY         L
Sbjct: 1   IPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKAL 60

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMIT 419
           S +  MK   ++   T  N ++     V    +A EIF  M+   + C+PD  TF+S+I 
Sbjct: 61  SYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIH 120

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           + S RG++ + +A+F+ ML  G +PN+    +LI  Y       +     + +   G  P
Sbjct: 121 LYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCP 180

Query: 480 D 480
           D
Sbjct: 181 D 181



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 38/245 (15%)

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL-------------------- 312
           F+ LI   G+ GN+   L V ++M   GV P+++T+N +L                    
Sbjct: 8   FNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMK 67

Query: 313 ------DT---------MGRAKRPWQVKTIYKEMTD--NGLSPNWNTYASLLRAYGRARY 355
                 DT         + + K+  Q   I+  M +  +   P+  T+ S++  Y     
Sbjct: 68  GTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQ 127

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            ED  +V+  M  +G++ ++  YN L++  A  G   EAF +F++MK S  C PD  +++
Sbjct: 128 IEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFC-PDVVSYT 186

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           S+I+      + + A  +F+ M     +PNL    +L+  YG        V  L  + + 
Sbjct: 187 SLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQD 246

Query: 476 GITPD 480
           GI P+
Sbjct: 247 GIHPN 251



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 133/319 (41%), Gaps = 5/319 (1%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNK 218
           K    ++ YN  M  +     L +A  +  +M   G+ P+ V+  TL+ +C R     N 
Sbjct: 212 KCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNI 271

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
                      G   + +  +S I +Y   G  E A  LY    N+  + D   F+ LI 
Sbjct: 272 D-SVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILIS 330

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
                  ++  L  ++EM  + +  +   Y++++    +  +  + ++++  +  +G  P
Sbjct: 331 GCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCP 390

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  TY +++ AY  +   E   ++Y+EM+   +QL     + L+              + 
Sbjct: 391 DLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFNKGNQASNVLILA 450

Query: 399 EDMKSSENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           E MK  E   P +   F  M++ CS      +A  + N M  +    +L  +  L+Q  G
Sbjct: 451 EIMK--EKGIPFNDANFFEMLSACSILRDWRKATDLINLMEPSFHLVSLGTINHLLQFLG 508

Query: 458 KAQRTDDVVRALNRLPELG 476
           K+ +T+ +++   R   LG
Sbjct: 509 KSGKTEIMIKLFYRFVALG 527



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 109/299 (36%), Gaps = 73/299 (24%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPN------- 217
           I  N  +  +    + +KA  L+  M ++  KPD+VTF+ LIS C RM+           
Sbjct: 288 IACNSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKE 347

Query: 218 ---------------------------KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
                                      KA   F  +   GC PD +TY++MI+AY  +  
Sbjct: 348 MLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEM 407

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN------ 304
            E    LY        ++D  A S L+K +         L + E MK  G+  N      
Sbjct: 408 WEKVCALYQEMEANNIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFE 467

Query: 305 -----------------------------MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
                                        + T N+LL  +G++ +   +  ++      G
Sbjct: 468 MLSACSILRDWRKATDLINLMEPSFHLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVALG 527

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM---CADVGYT 391
            S N NTY+ LL+    A      + V + M + G+Q S  +YN +L     C D  Y 
Sbjct: 528 SSVNINTYSILLKNLLSAGKWRKYIEVLQWMNDAGIQPSHAMYNNILFFAQHCGDAEYA 586


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 177/374 (47%), Gaps = 2/374 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ +  F +C     A  +   ++  G +PD  TF+TLI    +    ++AV   +RM  
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE 186

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            GC PD +TY+S+++   R+G+  +A  L  +      + D   +ST+I      G  D 
Sbjct: 187 NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDA 246

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            +++++EM+  G+K +++TYN+L+  + +A +      + K+M    + PN  T+  LL 
Sbjct: 247 AISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLD 306

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            + +    ++   +Y+EM  +G+  ++  YNTL+          EA  +  D+     C 
Sbjct: 307 VFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML-DLMVRNKCS 365

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD  TF+S+I       +V +   +F  + + G   N    + L+Q + ++ +       
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIE 527
              +   G+ PD    G LL+ +    K E+  ++ E ++KS   LG V+   + E   +
Sbjct: 426 FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCK 485

Query: 528 GDFKKEATELFNSI 541
           G   ++A  LF S+
Sbjct: 486 GGKVEDAWNLFCSL 499



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 143/301 (47%), Gaps = 3/301 (0%)

Query: 156 TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
           T  +K+S  V+ YN  ++   K    +    L  DM+ R + P+ +TF+ L+        
Sbjct: 256 TKGIKSS--VVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGK 313

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
             +A E ++ M + G  P+ +TY++++D Y     +  A  + D     K   D   F++
Sbjct: 314 LQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTS 373

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LIK Y      D  + V+  +   G+  N +TY+ L+    ++ +    + +++EM  +G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           + P+  TY  LL         E  L ++ ++++  M L + +Y T++      G  ++A+
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            +F  +   +  +P+  T++ MI+    +G +SEA  +  +M E G  PN     +LI+ 
Sbjct: 494 NLFCSL-PCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552

Query: 456 Y 456
           +
Sbjct: 553 H 553



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 139/299 (46%), Gaps = 1/299 (0%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D A  LF +M+     P  V FS   S        N  +++ +++   G   +  T + M
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I+ + R      A+ +  +     +  D   F+TLIK     G     + + + M   G 
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           +P+++TYN++++ + R+        + ++M +  +  +  TY++++ +  R    +  +S
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           +++EM+ KG++ SV  YN+L+      G  ++   + +DM S E   P+  TF+ ++ + 
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE-IVPNVITFNVLLDVF 308

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              GK+ EA  ++ EM+  G  PN+    +L+  Y    R  +    L+ +     +PD
Sbjct: 309 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 104/211 (49%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S +++ +   +K +   + +D   ++F ++  RG+  + VT+S L+     +     A
Sbjct: 363 KCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 422

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
            E F+ M S G  PD +TY  ++D     G +E A  +++  +  K  +    ++T+I+ 
Sbjct: 423 EELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
               G  +   N++  +   GVKPN++TY  ++  + +     +   + ++M ++G +PN
Sbjct: 483 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
             TY +L+RA+ R      +  +  EMK  G
Sbjct: 543 DCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 72/149 (48%), Gaps = 2/149 (1%)

Query: 137 IILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+L+ + +      AL  F +  K K    +++Y   ++   K   ++ A  LF  +  +
Sbjct: 443 ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK 502

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           GVKP+ +T++ +IS        ++A     +M   G  P+  TY+++I A+ R G++  +
Sbjct: 503 GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTAS 562

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             L +  ++  +  D ++   +I +  +A
Sbjct: 563 AKLIEEMKSCGFSADASSIKMVIDMLLSA 591


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 150/317 (47%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  YN  +    K R +DKAE +   M+D+GV+PD VT++ +I     +    ++ + F
Sbjct: 266 DVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMF 325

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M S G  PD +T+SS + +  + G  + A  ++     +    D  ++S L+  Y T 
Sbjct: 326 RKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATE 385

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G F    N++  M   G+  N    N L+    +     +   ++ EM   G+ PN  TY
Sbjct: 386 GRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTY 445

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           ++L+ A+ R     D +  + +M   G++ +  +Y++L+      G   +A E   +M S
Sbjct: 446 STLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMS 505

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               +P+   FSS+I      G+V +A+ +FN ++  G  P +    SLI  Y    + +
Sbjct: 506 KGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKME 565

Query: 464 DVVRALNRLPELGITPD 480
                L+ +  +GI PD
Sbjct: 566 KAFGVLDAMVSVGIEPD 582



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 152/303 (50%), Gaps = 5/303 (1%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGV-KPDNVTFSTLISCARMNNLPNKAVEWFER 225
           +Y+  +  F    DL KA+    +M+ +G+ +P+ V FS++I    +      A + F  
Sbjct: 479 VYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNL 538

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +   G  P  +T++S+ID Y   G +E AFG+ D   +     D    +TL+  Y  +G 
Sbjct: 539 VIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGK 598

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D  L ++ EM    VKP  +TYN +LD + RA R    K ++ EM D+G + + +TY  
Sbjct: 599 IDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKI 658

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           LL+   R    ++ ++++ ++     +  +T+ NT++     V   +EA ++F  + S+ 
Sbjct: 659 LLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAI-STS 717

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              P+  T+  MI      G V EA+ MF+ M ++G  P+  +L  +I+      +  D+
Sbjct: 718 GLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRML---LQKGDI 774

Query: 466 VRA 468
           V+A
Sbjct: 775 VKA 777



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 159/351 (45%), Gaps = 39/351 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE-WFERM 226
           Y + M    + R  D        +L  G+K   +  +T + C       ++AV+    RM
Sbjct: 127 YGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAVDVLLHRM 186

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAG 284
               C PDA++Y+++I +       + A  +  R   E  R  P+  +F+T+I  +   G
Sbjct: 187 SELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQG 246

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                 N++ EM   GV P++ TYN+++D + +A+   + + + ++M D G+ P+  TY 
Sbjct: 247 EVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYN 306

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +++  Y  + + +++  ++R+M  KG+      +++ ++     G + +A EIF+ M ++
Sbjct: 307 AIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYM-TT 365

Query: 405 ENCQPDSWTFS-------------------------SMITICSC----------RGKVSE 429
           +   PD  ++S                          +++ C C          RG + E
Sbjct: 366 KGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDE 425

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           A  +F EM   G  PN+   ++LI  + +  R  D +   +++  +GI P+
Sbjct: 426 AMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPN 476



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 153/321 (47%), Gaps = 2/321 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           + S +V+ +N  +  F K  ++ KA  LF++M+ +GV PD  T+++++         +KA
Sbjct: 227 RCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKA 286

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
                +M   G +PD +TY+++I  Y  +G+ + +  ++ +  ++    D   FS+ +  
Sbjct: 287 EFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSS 346

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
               G       +++ M   G  P++++Y+ LL       R   +  ++  M D G+  N
Sbjct: 347 LCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSN 406

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
            +    L+ A+ +    ++ + V+ EM+ +G++ +V  Y+TL++    +G   +A E F 
Sbjct: 407 CHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFS 466

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PNLFVLTSLIQCYGK 458
            M S    +P++  + S+I      G + +A+   +EM+  G   PN+   +S+I     
Sbjct: 467 QMISI-GIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCI 525

Query: 459 AQRTDDVVRALNRLPELGITP 479
             R  D     N +  +G  P
Sbjct: 526 EGRVMDAQDVFNLVIHIGDRP 546



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 174/389 (44%), Gaps = 17/389 (4%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ Y++ +  +           LF  M D+G+  +    + LIS      + ++A+  F
Sbjct: 371 DIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVF 430

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M   G  P+ +TYS++I A+ R G +  A   + +  +    I+PN   + +LI  + 
Sbjct: 431 TEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMIS--IGIEPNTAVYHSLIHGFC 488

Query: 282 TAGNFDGCLNVYEEMKAIGV-KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
             G+         EM + G+ +PN++ +++++ ++    R    + ++  +   G  P  
Sbjct: 489 MHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTI 548

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            T+ SL+  Y      E    V   M   G++  V   NTL++     G  D+   +F +
Sbjct: 549 VTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFRE 608

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M   +  +P + T++ ++      G+ S A+ MF+EM+++G   ++     L++   +  
Sbjct: 609 MLH-KKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRND 667

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT-PKEELGKLVECVEKSN-----SKLG 514
            TD+ +   ++L  +    D      ++N + +   +EE   L   +  S      S  G
Sbjct: 668 LTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYG 727

Query: 515 YVVKLLLEEQDIEGDFKKEATELFNSISK 543
            +++ LL+E  +E     EA  +F+S+ K
Sbjct: 728 VMIRNLLKEGSVE-----EADTMFSSMEK 751



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 104/220 (47%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ +N  +  +     ++KA  + D M+  G++PD VT +TL+S    +   +  +  F 
Sbjct: 548 IVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFR 607

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M      P  +TY+ ++D   RAG    A  ++    +    +D + +  L+K      
Sbjct: 608 EMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRND 667

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  + ++ ++ A+  K ++   N +++ + + +R  +   ++  ++ +GL PN +TY 
Sbjct: 668 LTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYG 727

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
            ++R   +    E+  +++  M++ G   S  L N ++ M
Sbjct: 728 VMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRM 767



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 4/177 (2%)

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY-RE 365
           TY  L+D   RA+RP         +   GL        + L+    A+  ++ + V    
Sbjct: 126 TYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAVDVLLHR 185

Query: 366 MKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSC 423
           M E         YNT++ ++C D   + EA ++ + M K    C PD  +F+++I     
Sbjct: 186 MSELSCVPDAISYNTVIKSLCGD-SRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFK 244

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +G+VS+A  +FNEM++ G  P++    S++    KA+  D     L ++ + G+ PD
Sbjct: 245 QGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPD 301



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 116/263 (44%), Gaps = 15/263 (5%)

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
           G+K   I     L  +  AKR  + V  +   M++    P+  +Y +++++       ++
Sbjct: 154 GLKTGTIQATTFLKCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQE 213

Query: 359 TLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            L + + M ++G + S  V  +NT++      G   +A  +F +M   +   PD  T++S
Sbjct: 214 ALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEM-VQKGVVPDVGTYNS 272

Query: 417 MI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           ++  +C  R  + +AE +  +M++ G EP+     ++I  Y  +    +  +   ++   
Sbjct: 273 IVDALCKARA-MDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSK 331

Query: 476 GITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYV-----VKLLLEEQDIEGDF 530
           G+ PD        + M+   K    K  E + +  +  G++       +LL     EG F
Sbjct: 332 GLIPDTV---TFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRF 388

Query: 531 KKEATELFNSISKDVKKAYCNCL 553
             +   LF+S++     + C+C+
Sbjct: 389 -ADMNNLFHSMADKGIVSNCHCI 410



 Score = 46.6 bits (109), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 34/189 (17%), Positives = 74/189 (39%), Gaps = 35/189 (18%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K     + YN+ +    +      A+++F +M+D G   D  T+  L+     N+L ++A
Sbjct: 613 KVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEA 672

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           +  F ++ +  C  D    ++MI+A            LY   R E+              
Sbjct: 673 ITLFHKLGAMDCKFDITILNTMINA------------LYKVRRREEAN------------ 708

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
                      +++  +   G+ PN+ TY  ++  + +     +  T++  M  +G +P+
Sbjct: 709 -----------DLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPS 757

Query: 340 WNTYASLLR 348
                 ++R
Sbjct: 758 SRLLNDIIR 766


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 182/377 (48%), Gaps = 6/377 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I++N         LAL      +K   E  ++  +  +  +   + + +A  L D M   
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
             +P+ VTF+TLI    ++N  ++AV   +RM + GC PD  TY ++++   + G++++A
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             L  +    K   D   ++T+I       N +  LN++ EM   G++PN++TYN+L+  
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +    R      +  +M +  ++PN  T+++L+ A+ +     +   +Y EM ++ +   
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAM 433
           +  Y++L+         DEA  +FE M  S++C P+  T++++I   C  + +V E   +
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLIKGFCKAK-RVEEGMEL 417

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           F EM + G   N     +LIQ   +A   D   +   ++   G+ PD      LL+ + +
Sbjct: 418 FREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCK 477

Query: 494 TPKEELGKLV-ECVEKS 509
             K E   +V E ++KS
Sbjct: 478 YGKLEKALVVFEYLQKS 494



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 167/334 (50%), Gaps = 5/334 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL+L     K K   +V++Y   +      ++++ A  LF +M ++G++P+ VT+++LI 
Sbjct: 239 ALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 298

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           C       + A      M     +P+ +T+S++IDA+ + G +  A  LYD     K  I
Sbjct: 299 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI--KRSI 356

Query: 269 DPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           DP+ F  S+LI  +      D   +++E M +    PN++TYN L+    +AKR  +   
Sbjct: 357 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGME 416

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +++EM+  GL  N  TY +L++   +A   +    ++++M   G+   +  Y+ LL    
Sbjct: 417 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 476

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G  ++A  +FE ++ S+  +PD +T++ MI      GKV +   +F  +   G +PN+
Sbjct: 477 KYGKLEKALVVFEYLQKSK-MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV 535

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            + T++I  + +    ++       + E G  P+
Sbjct: 536 IIYTTMISGFCRKGLKEEADALFREMKEDGTLPN 569



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 176/369 (47%), Gaps = 20/369 (5%)

Query: 94  SYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVI---ILNNMTNPDTAAL 150
           +Y T  N L K   D+D          S+L+ +    +E D VI   I++ + N      
Sbjct: 222 TYGTVVNGLCK-RGDIDL-------ALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVND 273

Query: 151 ALTYFT---NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AL  FT   NK      V+ YN  ++          A RL  DM++R + P+ VTFS LI
Sbjct: 274 ALNLFTEMDNK-GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 332

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                     +A + ++ M     DPD  TYSS+I+ +     ++ A  +++   ++   
Sbjct: 333 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF 392

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            +   ++TLIK +  A   +  + ++ EM   G+  N +TYN L+  + +A      + I
Sbjct: 393 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 452

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
           +K+M  +G+ P+  TY+ LL   G  +YG  E  L V+  +++  M+  +  YN ++   
Sbjct: 453 FKKMVSDGVPPDIITYSILLD--GLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 510

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G  ++ +++F  + S +  +P+   +++MI+    +G   EA+A+F EM E G  PN
Sbjct: 511 CKAGKVEDGWDLFCSL-SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPN 569

Query: 446 LFVLTSLIQ 454
                +LI+
Sbjct: 570 SGTYNTLIR 578



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 154/329 (46%), Gaps = 12/329 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           ++ +N  +    K    D    L + M +  +  D  +++ LI+C  R + LP  A+   
Sbjct: 80  IVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLP-LALAVL 138

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M   G +PD +T SS+++ Y     +  A  L D+    +++ +   F+TLI      
Sbjct: 139 GKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLH 198

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                 + + + M A G +P++ TY  +++ + +        ++ K+M    +  +   Y
Sbjct: 199 NKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 258

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +++ A    +   D L+++ EM  KG++ +V  YN+L+    + G   +A  +  DM  
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-I 317

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                P+  TFS++I      GK+ EAE +++EM++   +P++F  +SLI  +    R D
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMT 492
           +       + EL I+ D     C  NV+T
Sbjct: 378 EA----KHMFELMISKD-----CFPNVVT 397



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 139/299 (46%), Gaps = 42/299 (14%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K +  V+ ++  +  F K   L +AE+L+D+M+ R + PD  T+S+LI+   M++  ++A
Sbjct: 320 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 379

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              FE M S  C P+ +TY+++I  + +A  VE    L+          +   ++TLI+ 
Sbjct: 380 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG 439

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM------------------------ 315
              AG+ D    ++++M + GV P++ITY+ LLD +                        
Sbjct: 440 LFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 499

Query: 316 --------------GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
                         G+ +  W    ++  ++  G+ PN   Y +++  + R    E+  +
Sbjct: 500 IYTYNIMIEGMCKAGKVEDGWD---LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 556

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
           ++REMKE G   +   YNTL+      G    + E+ ++M+S      D+ T S +I +
Sbjct: 557 LFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSC-GFVGDASTISMVINM 614



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 4/225 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +K F K + +++   LF +M  RG+  + VT++TLI         + A + F+
Sbjct: 395 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 454

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M S G  PD +TYS ++D   + G +E A  +++  +  K   D   ++ +I+    AG
Sbjct: 455 KMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAG 514

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +   +++  +   GVKPN+I Y  ++    R     +   +++EM ++G  PN  TY 
Sbjct: 515 KVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYN 574

Query: 345 SLLRAYGRARYGEDTLS--VYREMKEKGMQLSVTLYNTLLAMCAD 387
           +L+RA  R R G+   S  + +EM+  G     +  + ++ M  D
Sbjct: 575 TLIRA--RLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHD 617



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 62/131 (47%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL +  +  K K   ++  YN+ ++   K   ++    LF  +  +GVKP+ + ++T+IS
Sbjct: 484 ALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMIS 543

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 L  +A   F  M   G  P++ TY+++I A  R G+   +  L    R+  +  
Sbjct: 544 GFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVG 603

Query: 269 DPNAFSTLIKL 279
           D +  S +I +
Sbjct: 604 DASTISMVINM 614


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 171/372 (45%), Gaps = 4/372 (1%)

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           R+LD A  +FD M+  G  P++VT+STLI+        ++A++  E M   G +P   TY
Sbjct: 289 RNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTY 348

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           +  I A     + E A  L  R +    R +   ++ LI      G  +  + +Y +M  
Sbjct: 349 TLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLK 408

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
            G+ PN +TYN L++ +    R      I+  M  +G   N  TY  +++        E 
Sbjct: 409 EGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEK 468

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            + ++ +M + G   +V  YNTL+      G  + A  + + MK +  C+PD WT++ ++
Sbjct: 469 AMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKEN-GCEPDEWTYNELV 527

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
           +  S  GK+  A   F EM+E G  PN    T+LI  + K  + D  +  L R+ E+G  
Sbjct: 528 SGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCN 587

Query: 479 PDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 538
           P+      ++N ++   KE      E +    ++ G +  ++     I+G  +   T+  
Sbjct: 588 PNVESYNAVINGLS---KENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFA 644

Query: 539 NSISKDVKKAYC 550
             I  D++K  C
Sbjct: 645 FKIFHDMEKRKC 656



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 141/321 (43%), Gaps = 36/321 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +K      D++KA  LF+ ML  G  P  VT++TLI+        N A    + M 
Sbjct: 453 YNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMK 512

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC+PD  TY+ ++  + + G +E A   +          +P +++TLI  +   G  D
Sbjct: 513 ENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVD 572

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L++ E M+ +G  PN+ +YN +++ + +  R  + + I  +M + GL PN        
Sbjct: 573 IALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPN-------- 624

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
                                      V  Y TL+      G T  AF+IF DM+  + C
Sbjct: 625 ---------------------------VITYTTLIDGLCRNGRTQFAFKIFHDMEKRK-C 656

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+ +T+SS+I      GK  EAE +  EM   G  P+    TSLI  +    R D    
Sbjct: 657 LPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFL 716

Query: 468 ALNRLPELGITPDDRFCGCLL 488
            L R+ ++G  P+ R    LL
Sbjct: 717 LLRRMVDVGCKPNYRTYSVLL 737



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 143/303 (47%), Gaps = 5/303 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           ++ A  L+  ML+ G++P  +TF+TLI+         +A     ++  +   PD  TY+S
Sbjct: 221 VEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTS 280

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKA 298
           +I  + R  N+++AFG++DR   E    DPN+  +STLI      G  D  L++ EEM  
Sbjct: 281 LILGHCRNRNLDLAFGVFDRMVKEG--CDPNSVTYSTLINGLCNEGRVDEALDMLEEMIE 338

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
            G++P + TY   +  +   +   +   +   M   G  PN  TY +L+    R    E 
Sbjct: 339 KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEV 398

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            + +Y +M ++G+  +   YN L+      G    A +IF  M+       ++ T++ +I
Sbjct: 399 AIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWME-GHGSLANTQTYNEII 457

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 G + +A  +F +ML+ G  P +    +LI  Y      ++  R L+ + E G  
Sbjct: 458 KGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCE 517

Query: 479 PDD 481
           PD+
Sbjct: 518 PDE 520



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 154/357 (43%), Gaps = 27/357 (7%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL+L     ++  +  V  YN  +    K     +AE++ D M ++G+ P+ +T++TLI 
Sbjct: 574 ALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLID 633

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               N     A + F  M    C P+  TYSS+I    + G  + A  L      +    
Sbjct: 634 GLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAP 693

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR------AKRPW 322
           D   F++LI  +   G  D    +   M  +G KPN  TY+ LL  + +       K   
Sbjct: 694 DEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAV 753

Query: 323 QVKTIYK------------------EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           Q + +Y                    M++ G  P  +TY++L+    R     +   + +
Sbjct: 754 QHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVK 813

Query: 365 EMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
           +MKE+G      +Y +LL A C ++   D A +IF  ++ ++  Q     + ++I     
Sbjct: 814 DMKERGFCPDREIYYSLLIAHCKNLE-VDHALKIFHSIE-AKGFQLHLSIYRALICALCK 871

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            G+V EA+A+F+ MLE  +  +  V T L+    K    D  ++ L+ +     TP+
Sbjct: 872 AGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPN 928



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 149/332 (44%), Gaps = 23/332 (6%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +  F K   L+ A   F +M++ G+ P+ V+++TLI     +   + A+   ERM 
Sbjct: 523 YNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERME 582

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC+P+  +Y+++I+   +      A  + D+   +    +   ++TLI      G   
Sbjct: 583 EMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQ 642

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++ +M+     PN+ TY++L+  + +  +  + + + KEM   GL+P+  T+ SL+
Sbjct: 643 FAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLI 702

Query: 348 RAYGRARYGEDTLSVYREMKE--------------KGMQLSVTLYNTLLAMCADVGYT-- 391
             +      +    + R M +              KG+Q    L    +A+  +  Y+  
Sbjct: 703 DGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFS 762

Query: 392 ----DEAFEIFEDM---KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
               D  FEI  ++    S   C+P   T+S++++    +G+  EAE +  +M E GF P
Sbjct: 763 PHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCP 822

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +  +  SL+  + K    D  ++  + +   G
Sbjct: 823 DREIYYSLLIAHCKNLEVDHALKIFHSIEAKG 854



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 126/287 (43%), Gaps = 24/287 (8%)

Query: 167 LYNVTMKVFRKCRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           LY  +  ++  C++   D+AE L  +M  +G+ PD VTF++LI    +    + A     
Sbjct: 660 LYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLR 719

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           RM   GC P+  TYS ++    +   +            EK  +   A  +    +    
Sbjct: 720 RMVDVGCKPNYRTYSVLLKGLQKECLL----------LEEKVAVQHEAVYSF-SPHEKDV 768

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           NF+   N+   M  IG +P + TY+ L+  + R  R ++ + + K+M + G  P+   Y 
Sbjct: 769 NFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYY 828

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SLL A+ +    +  L ++  ++ KG QL +++Y  L+      G  +EA  +F++M   
Sbjct: 829 SLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEK 888

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAE-----AMFNEMLEAGFEPNL 446
           E      W    ++      G + E E      + + M    F PN+
Sbjct: 889 E------WNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNI 929



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 119/277 (42%), Gaps = 8/277 (2%)

Query: 188 FDDMLDRGVK-----PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           F  ML+R V+     P +     +I   R      +  ++   +   G      + ++++
Sbjct: 153 FISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLL 212

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
               +   VE A  LY +  N   +     F+TLI +    G       +  ++    + 
Sbjct: 213 IQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLS 272

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P++ TY +L+    R +       ++  M   G  PN  TY++L+         ++ L +
Sbjct: 273 PDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDM 332

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
             EM EKG++ +V  Y   +     + + +EA E+   MK    C+P+  T++++I+  S
Sbjct: 333 LEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMK-KRGCRPNVQTYTALISGLS 391

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ--CYG 457
             GK+  A  ++++ML+ G  PN     +LI   C G
Sbjct: 392 RLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVG 428



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 5/144 (3%)

Query: 370 GMQLSVTLY--NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
           GM    +LY  NTLL   A     + A  +++ M +S   QP   TF+++I I S +GKV
Sbjct: 198 GMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNS-GIQPSLLTFNTLINILSKKGKV 256

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
            EAE + +++ +    P++F  TSLI  + + +  D      +R+ + G  P+      L
Sbjct: 257 REAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 316

Query: 488 LNVMTQTPK--EELGKLVECVEKS 509
           +N +    +  E L  L E +EK 
Sbjct: 317 INGLCNEGRVDEALDMLEEMIEKG 340



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +AE+L  DM +RG  PD   + +L+     N   + A++ F  + + G       Y ++I
Sbjct: 807 EAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALI 866

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            A  +AG VE A  L+D    ++W  D   ++ L+      G  D C+ +   M++    
Sbjct: 867 CALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFT 926

Query: 303 PNMITY 308
           PN+ TY
Sbjct: 927 PNIQTY 932



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +V     E++  G   +  +  +LL    +    E   ++Y++M   G+Q S+  +NTL+
Sbjct: 188 RVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLI 247

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAG 441
            + +  G   EA E+        +  PD +T++S+I +  CR + +  A  +F+ M++ G
Sbjct: 248 NILSKKGKVREA-ELILSQIFQYDLSPDVFTYTSLI-LGHCRNRNLDLAFGVFDRMVKEG 305

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
            +PN    ++LI       R D+ +  L  + E GI P
Sbjct: 306 CDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEP 343


>gi|302794911|ref|XP_002979219.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
 gi|300152987|gb|EFJ19627.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
          Length = 1143

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 156/314 (49%), Gaps = 1/314 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI+Y++ +KV+ + + +  AE  F +MLD+ + PD V FST+I       + ++ +  +E
Sbjct: 276 VIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTMILNYANAEMFDEMLTMYE 335

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M S G  P ++TY++M+    +A  +  A  L++    E   + P A++ +I +Y   G
Sbjct: 336 AMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYALMITIYRKLG 395

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            F+  L V+E M   G  P+ + YN +L  +G+  R  +   ++  M    L  +  +YA
Sbjct: 396 RFEEALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSYA 455

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           ++L    +A   E   S++ +M+ K   +   +Y +++++    G  DEA ++F++M + 
Sbjct: 456 TMLHICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEM-NE 514

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
                D  TFS M  +    GK +EA  +  E+L  G   +     +L+ CY KA   + 
Sbjct: 515 LRLLVDVKTFSVMANVRLKAGKYNEAVQVMEELLAKGLNLDDTAWKTLLHCYVKAGNVER 574

Query: 465 VVRALNRLPELGIT 478
             +    L E GI 
Sbjct: 575 ATKTFKTLVESGIA 588



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 149/315 (47%), Gaps = 3/315 (0%)

Query: 199  DNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
            +N  +S+++      N   KA    E+M   G   D++  S +++AY +AG VE A  L 
Sbjct: 791  NNFVYSSMVGALINCNQLEKAAGLVEKMRQIGLKCDSVLVSILLNAYSKAGLVEDADALI 850

Query: 259  DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
              AR +   +D  A++T+IK    AG     ++ Y  +  +G++P++ TY+ ++    ++
Sbjct: 851  HMARGDGIPLDIVAYNTIIKADLRAGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKS 910

Query: 319  KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
             R    + ++K++   G  P+   Y+ ++  Y ++   E    ++  MK +G++     Y
Sbjct: 911  GRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSY 970

Query: 379  NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
            N L+   A  G   +A ++  +M  +  C P S TF  +I+  + RGK +EAE     M 
Sbjct: 971  NNLIDAYARAGQFAKAEQLLVEMAKA-GCPPSSVTFLLLISAYAHRGKCNEAENALERMQ 1029

Query: 439  EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
             A   P +     ++  + +A+     + +  ++   GI PD      ++ ++ +    E
Sbjct: 1030 TAAIRPTVRHYNEVMLAFSRARLPSQAMESYLKMERSGIQPDVVSSRTMIRILLEGSMFE 1089

Query: 499  LGKLVECVEKSNSKL 513
             G  +   +K+ +KL
Sbjct: 1090 EG--LSLYKKTEAKL 1102



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 139/298 (46%), Gaps = 2/298 (0%)

Query: 200 NVTFSTLISCARMNNLPNKAVEWFERMP-SFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
            +TF  L +  +      +A E+F  M       P  + YS ++  YGR   + +A   +
Sbjct: 240 RLTFRELCTVLKWQQGWKEAQEFFAWMKLQLSYIPSVIVYSMLLKVYGRDKQIGLAEAAF 299

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
               ++K   D  AFST+I  Y  A  FD  L +YE M + G+ P+ +TY  +L  + +A
Sbjct: 300 QEMLDQKLDPDEVAFSTMILNYANAEMFDEMLTMYEAMMSRGIVPSSVTYTTMLIHLNKA 359

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
           +R      +++++ +  +  +   YA ++  Y +    E+ L V+  M   G      +Y
Sbjct: 360 ERLADAALLWEDLVEESVELSPLAYALMITIYRKLGRFEEALEVFEAMLGAGYYPDSLIY 419

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           N +L M   +G  DEA ++F  M+  E C    +++++M+ IC    K   A ++F++M 
Sbjct: 420 NMVLHMLGKLGRYDEAVDVFTAMQRQELC-TSKYSYATMLHICEKADKFELAASIFSDMQ 478

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
                 +  V TS+I  YGKA   D+  +    + EL +  D +    + NV  +  K
Sbjct: 479 MKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGK 536



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 154/343 (44%), Gaps = 6/343 (1%)

Query: 80   VNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLR--CLGDDFLEQDCVI 137
            V P     S++++K +D   ++L  L A        E  V + L+     ++F+    V 
Sbjct: 743  VPPAEMLHSRMQDKGFDVEDSTLGHLIAAYGKAGRYE--VLTKLKPELPRNNFVYSSMVG 800

Query: 138  ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
             L N    + AA  L     ++    + +L ++ +  + K   ++ A+ L       G+ 
Sbjct: 801  ALINCNQLEKAA-GLVEKMRQIGLKCDSVLVSILLNAYSKAGLVEDADALIHMARGDGIP 859

Query: 198  PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
             D V ++T+I          KA++ +  + + G  P   TY +MI  + ++G    A  +
Sbjct: 860  LDIVAYNTIIKADLRAGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKM 919

Query: 258  YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
            +   ++  ++ D   +S ++  Y  +G ++   +++E MK  G++P+ ++YNNL+D   R
Sbjct: 920  FKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYAR 979

Query: 318  AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
            A +  + + +  EM   G  P+  T+  L+ AY       +  +    M+   ++ +V  
Sbjct: 980  AGQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERMQTAAIRPTVRH 1039

Query: 378  YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            YN ++   +      +A E +  M+ S   QPD  +  +MI I
Sbjct: 1040 YNEVMLAFSRARLPSQAMESYLKMERS-GIQPDVVSSRTMIRI 1081



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 158/337 (46%), Gaps = 9/337 (2%)

Query: 181 LDKAERLFD------DMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           L+KAERL D      D+++  V+   + ++ +I+  R      +A+E FE M   G  PD
Sbjct: 356 LNKAERLADAALLWEDLVEESVELSPLAYALMITIYRKLGRFEEALEVFEAMLGAGYYPD 415

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
           +L Y+ ++   G+ G  + A  ++   + ++      +++T++ +   A  F+   +++ 
Sbjct: 416 SLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSYATMLHICEKADKFELAASIFS 475

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           +M+      + + Y +++   G+A    + + +++EM +  L  +  T++ +     +A 
Sbjct: 476 DMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAG 535

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
              + + V  E+  KG+ L  T + TLL      G  + A + F+ +   E+   D   +
Sbjct: 536 KYNEAVQVMEELLAKGLNLDDTAWKTLLHCYVKAGNVERATKTFKTL--VESGIADLMAY 593

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + M+++ +    + +A+ +F ++  +  +P+     ++++ Y  A         L ++ E
Sbjct: 594 NDMLSLYAEFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVLRQMRE 653

Query: 475 LGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 510
            G TPD    G L+N   +  + EE   L+E   K +
Sbjct: 654 KGFTPDHITQGILINAYGEANRIEEAAGLLEASAKED 690



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 151/354 (42%), Gaps = 72/354 (20%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFST-LISCARMNNLPNKAVEW----------------- 222
            D+   +++ M+ RG+ P +VT++T LI   +   L + A+ W                 
Sbjct: 327 FDEMLTMYEAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYAL 386

Query: 223 -----------------FERMPSFGCDPDALTYSSMIDAYGRAG---------------- 249
                            FE M   G  PD+L Y+ ++   G+ G                
Sbjct: 387 MITIYRKLGRFEEALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQE 446

Query: 250 -------------------NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
                                E+A  ++   + ++  +D   ++++I +YG AG +D   
Sbjct: 447 LCTSKYSYATMLHICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAE 506

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            +++EM  + +  ++ T++ + +   +A +  +   + +E+   GL+ +   + +LL  Y
Sbjct: 507 KLFQEMNELRLLVDVKTFSVMANVRLKAGKYNEAVQVMEELLAKGLNLDDTAWKTLLHCY 566

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
            +A   E     ++ + E G+   +  YN +L++ A+    ++A  +F+ +KSS + QPD
Sbjct: 567 VKAGNVERATKTFKTLVESGIA-DLMAYNDMLSLYAEFDMLEDAKLLFQQLKSS-SIQPD 624

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              F +M+ +      V+ AE +  +M E GF P+      LI  YG+A R ++
Sbjct: 625 QVWFGTMVKLYCNANMVAAAEEVLRQMREKGFTPDHITQGILINAYGEANRIEE 678



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 155/381 (40%), Gaps = 65/381 (17%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + ++ +   L+ A+ LF  +    ++PD V F T++      N+   A E  
Sbjct: 589 DLMAYNDMLSLYAEFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVL 648

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE---------------KWR- 267
            +M   G  PD +T   +I+AYG A  +E A GL + +  E               K+R 
Sbjct: 649 RQMREKGFTPDHITQGILINAYGEANRIEEAAGLLEASAKEDESEAAAISRIYLCLKFRL 708

Query: 268 ----------------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
                           +D  A++ L   +  AG       ++  M+  G      T  +L
Sbjct: 709 FDKATLLLHRVLESFTLDSAAYNQLTINFLKAGQVPPAEMLHSRMQDKGFDVEDSTLGHL 768

Query: 312 LDTMGRAKRPWQVKT-------------------------------IYKEMTDNGLSPNW 340
           +   G+A R ++V T                               + ++M   GL  + 
Sbjct: 769 IAAYGKAGR-YEVLTKLKPELPRNNFVYSSMVGALINCNQLEKAAGLVEKMRQIGLKCDS 827

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
              + LL AY +A   ED  ++    +  G+ L +  YNT++      G   +A + +  
Sbjct: 828 VLVSILLNAYSKAGLVEDADALIHMARGDGIPLDIVAYNTIIKADLRAGRLKKAIDTYSS 887

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           + ++   +P   T+ +MI++ +  G+  +AE MF ++  AGF+P+  V + ++ CY K+ 
Sbjct: 888 L-TNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSG 946

Query: 461 RTDDVVRALNRLPELGITPDD 481
             +        +   G+ P +
Sbjct: 947 MYEHAADLFEAMKLRGLRPHE 967



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 120/279 (43%), Gaps = 2/279 (0%)

Query: 164  EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
            +++ YN  +K   +   L KA   +  + + G++P   T+ T+IS    +     A + F
Sbjct: 861  DIVAYNTIIKADLRAGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMF 920

Query: 224  ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            + + S G  PD   YS M++ Y ++G  E A  L++  +    R    +++ LI  Y  A
Sbjct: 921  KDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARA 980

Query: 284  GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            G F     +  EM   G  P+ +T+  L+       +  + +   + M    + P    Y
Sbjct: 981  GQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERMQTAAIRPTVRHY 1040

Query: 344  ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
              ++ A+ RAR     +  Y +M+  G+Q  V    T++ +  +    +E   +++  K+
Sbjct: 1041 NEVMLAFSRARLPSQAMESYLKMERSGIQPDVVSSRTMIRILLEGSMFEEGLSLYK--KT 1098

Query: 404  SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
                  DS +   +  +    GK  EA+ +  +   A F
Sbjct: 1099 EAKLVSDSLSREMVAKLYQGAGKHFEAKYILRQTSGACF 1137


>gi|222618027|gb|EEE54159.1| hypothetical protein OsJ_00969 [Oryza sativa Japonica Group]
          Length = 610

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 155/327 (47%), Gaps = 16/327 (4%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ Y   +      R  D    L  ++ D G++PD++ F+ LI+         +A   F 
Sbjct: 114 LVTYTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNALINALVEARRMGEATNTFL 173

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD----RARNEKWRIDPN--AFSTLIK 278
           RM   GC P A T++++I  YG AG  E +  ++D         +  + PN   ++ L+K
Sbjct: 174 RMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAGGEAAVRPNLTTYNILVK 233

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLS 337
            +  AG  +    V   M+A G  P+++TYN L     +    W+ + +  EM    GL 
Sbjct: 234 AWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMAQQAGLR 293

Query: 338 PNWNTYASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM---CADVGYTDE 393
            +  T+  ++  Y R  R GE  L   R+MK+ G+  +V ++NTLL       D+   D+
Sbjct: 294 TSERTWGIIVGGYCREGRLGE-ALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAVDD 352

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
              + E        +PD  T+S  +   S  G +++   +F++M+EAG EP+  V + L 
Sbjct: 353 VLGLMEQF----GIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILA 408

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPD 480
           + Y +AQ+ +     L ++  LG+ P+
Sbjct: 409 KGYVRAQQPEKAEELLRQMGRLGVRPN 435



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 121/298 (40%), Gaps = 11/298 (3%)

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
           P++A   F  +   G  P  +TY++++ A       +    L     +   R D   F+ 
Sbjct: 95  PHQAHSAFRHLVDDGHRPSLVTYTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNA 154

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LI     A       N +  M   G +P   T+N L+   G A RP + + ++  M   G
Sbjct: 155 LINALVEARRMGEATNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGG 214

Query: 336 ------LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
                 + PN  TY  L++A+  A   E+   V   M+  G    V  YNTL +  A   
Sbjct: 215 AGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKND 274

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
            T  A E+  +M      +    T+  ++      G++ EA     +M ++G  PN+ V 
Sbjct: 275 ETWRAEELVVEMAQQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVF 334

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
            +L++ +  A     V   L  + + GI PD       LN ++      +G + +C++
Sbjct: 335 NTLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALS-----SMGHMAKCMK 387



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 122/280 (43%), Gaps = 32/280 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ +K +     L++A R+   M   G  PD VT++TL S    N+   +A E    M 
Sbjct: 228 YNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMA 287

Query: 228 S-FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAG 284
              G      T+  ++  Y R G +  A     + ++    + PN   F+TL+K +  A 
Sbjct: 288 QQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSG--VLPNVIVFNTLLKGFLDAN 345

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           +     +V   M+  G+KP+++TY++ L+ +       +   ++ +M + G+ P+   Y+
Sbjct: 346 DMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYS 405

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L + Y RA+  E    + R+M   G++ +V  + T+++                     
Sbjct: 406 ILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVIS--------------------- 444

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
                  WTF ++I   S   +  +AE +   M +AG  P
Sbjct: 445 ------GWTFETLIWGYSELKQPWKAEEVLQMMQDAGVRP 478



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 11/184 (5%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           CR+  L +A R    M D GV P+ + F+TL+      N      +    M  FG  PD 
Sbjct: 307 CREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDI 366

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           +TYS  ++A    G++     ++D+        DP  +S L K Y  A   +    +  +
Sbjct: 367 VTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQ 426

Query: 296 MKAIGVKPNMITYNNLL-----DTM----GRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           M  +GV+PN++T+  ++     +T+       K+PW+ + + + M D G+ P   TY  +
Sbjct: 427 MGRLGVRPNVVTFTTVISGWTFETLIWGYSELKQPWKAEEVLQMMQDAGVRPKQTTYCLV 486

Query: 347 LRAY 350
             A+
Sbjct: 487 ADAW 490



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 7/182 (3%)

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           +I     +  M  A+RP Q  + ++ + D+G  P+  TY +LL A    R  +    +  
Sbjct: 79  VIARTRQMRAMIDARRPHQAHSAFRHLVDDGHRPSLVTYTTLLAALTSQRAFDTIPWLLA 138

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           E+++ G++     +N L+    +     EA   F  M  S  C+P + TF+++I      
Sbjct: 139 EVEDAGLRPDSIFFNALINALVEARRMGEATNTFLRMGHS-GCRPTASTFNTLIKGYGIA 197

Query: 425 GKVSEAEAMFNEM------LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
           G+  E++ +F+ M       EA   PNL     L++ +  A R ++  R + R+   G  
Sbjct: 198 GRPEESQRVFDMMASGGAGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGAD 257

Query: 479 PD 480
           PD
Sbjct: 258 PD 259



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 18/170 (10%)

Query: 99  YNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVII---LNNMTNPDTAALALTYF 155
           +N+L+K   D +  +A  DDV  ++   G   ++ D V     LN +++    A  +  F
Sbjct: 334 FNTLLKGFLDANDMAAV-DDVLGLMEQFG---IKPDIVTYSHQLNALSSMGHMAKCMKVF 389

Query: 156 TNKLKASKEV--ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
              ++A  E    +Y++  K + + +  +KAE L   M   GV+P+ VTF+T+IS     
Sbjct: 390 DKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGWTFE 449

Query: 214 NL---------PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
            L         P KA E  + M   G  P   TY  + DA+   G VE A
Sbjct: 450 TLIWGYSELKQPWKAEEVLQMMQDAGVRPKQTTYCLVADAWKAVGLVENA 499



 Score = 47.0 bits (110), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 26/145 (17%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ Y+  +        + K  ++FD M++ G++PD   +S L         P KA E  
Sbjct: 365 DIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELL 424

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M   G  P+ +T++++I  +                           F TLI  Y   
Sbjct: 425 RQMGRLGVRPNVVTFTTVISGW--------------------------TFETLIWGYSEL 458

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITY 308
                   V + M+  GV+P   TY
Sbjct: 459 KQPWKAEEVLQMMQDAGVRPKQTTY 483


>gi|356575428|ref|XP_003555843.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Glycine max]
          Length = 562

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 177/387 (45%), Gaps = 45/387 (11%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           + K  D + AE++   M   G  P+ V+ + L+         N A   F RM  +G +P 
Sbjct: 146 YGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGGRYNNAEAIFRRMQKWGPEPS 205

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEK---WRIDPNAFSTLIKLYGTAGNFDGCLN 291
           A TY  ++  + +      A  L+D   N++    + D   F+ +I ++  AG+++    
Sbjct: 206 AFTYQIILKTFVQGNKFREAEELFDNLLNDENSPLKPDQKMFNMMIYMHKKAGSYEKARK 265

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
            + +M  +G++   +TYN+L+      K   +V  IY +M    L P+  +YA L+ AYG
Sbjct: 266 TFAQMAELGIQQTTVTYNSLMSFETNYK---EVSNIYDQMQRADLRPDVVSYALLVSAYG 322

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           +AR  E+ L+V+ EM + G++ +   YN LL   +  G  ++A  +F+ M+      PD 
Sbjct: 323 KARREEEALAVFEEMLDAGIRPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYF-PDL 381

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF------------------------ 447
            ++++M++       +  AE  F  +++ GFEPN+                         
Sbjct: 382 CSYTTMLSAYINADDMEGAEKFFKRLIQDGFEPNVVTYGTLIKGYAKINDLEMVMKKYEE 441

Query: 448 -----------VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM-TQTP 495
                      +LT+++  YGK+   D  V     +   GI PD +    LL++  T   
Sbjct: 442 MLMRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEMESNGIPPDQKAKNVLLSLAKTDEE 501

Query: 496 KEELGKLVECVEKSNS--KLGYVVKLL 520
           +EE  +LV    +++S  K+  +VKL+
Sbjct: 502 REEANELVVHFSENSSLPKVNGIVKLV 528



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 134/291 (46%), Gaps = 12/291 (4%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC----ARMNNLPNKAVEW 222
           ++N+ + + +K    +KA + F  M + G++   VT+++L+S       ++N+       
Sbjct: 246 MFNMMIYMHKKAGSYEKARKTFAQMAELGIQQTTVTYNSLMSFETNYKEVSNI------- 298

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           +++M      PD ++Y+ ++ AYG+A   E A  +++   +   R    A++ L+  +  
Sbjct: 299 YDQMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGIRPTRKAYNILLDAFSI 358

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           +G  +    V++ M+     P++ +Y  +L     A      +  +K +  +G  PN  T
Sbjct: 359 SGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYINADDMEGAEKFFKRLIQDGFEPNVVT 418

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +L++ Y +    E  +  Y EM  +G++ + T+  T++      G  D A   F++M+
Sbjct: 419 YGTLIKGYAKINDLEMVMKKYEEMLMRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEME 478

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           S+    PD    + ++++     +  EA  +     E    P +  +  L+
Sbjct: 479 SN-GIPPDQKAKNVLLSLAKTDEEREEANELVVHFSENSSLPKVNGIVKLV 528



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 103/230 (44%), Gaps = 7/230 (3%)

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           W      F  LI  YG  G+F+G   V   M   G  PN+++   L++  G+  R    +
Sbjct: 132 WDFGKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGGRYNNAE 191

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
            I++ M   G  P+  TY  +L+ +    + R  E+        +   ++    ++N ++
Sbjct: 192 AIFRRMQKWGPEPSAFTYQIILKTFVQGNKFREAEELFDNLLNDENSPLKPDQKMFNMMI 251

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            M    G  ++A + F  M +    Q  + T++S+++  +   +VS    ++++M  A  
Sbjct: 252 YMHKKAGSYEKARKTFAQM-AELGIQQTTVTYNSLMSFETNYKEVSN---IYDQMQRADL 307

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            P++     L+  YGKA+R ++ +     + + GI P  +    LL+  +
Sbjct: 308 RPDVVSYALLVSAYGKARREEEALAVFEEMLDAGIRPTRKAYNILLDAFS 357


>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 642

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 163/333 (48%), Gaps = 4/333 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + Y+  +  F K    D A RLFD+M + G+ P    ++TL+      +   KA++  
Sbjct: 233 DTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVI 292

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   GC     TY+  I   G+AG V+ A+ ++     +  + D    ++LI + G  
Sbjct: 293 KEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKV 352

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNT 342
           G  +  L ++ +M++   KPN++TYN ++  +   K P  +  + +++M   G++P+  T
Sbjct: 353 GRLEVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFT 412

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y+ L+  + +    E  L +  EM EKG       Y +L+     V   + A E+F ++K
Sbjct: 413 YSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELK 472

Query: 403 SSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             ENC    +  ++ MI      G++SEA  +FNEM + G +P+++   +L+    +A  
Sbjct: 473 --ENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGM 530

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
            D+    L  + E G +PD      +LN + +T
Sbjct: 531 IDEAQSLLRTMDENGCSPDLNSHNIILNGLART 563



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 173/379 (45%), Gaps = 11/379 (2%)

Query: 200 NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD 259
           +V  S ++       + NKA+  F ++    C P A TY+SMI    + G++E    +Y+
Sbjct: 163 SVYLSEIVKLLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYN 222

Query: 260 RARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
              N+     D   +S LI  +G  G++D  + +++EMK  G+ P    Y  LL    + 
Sbjct: 223 EMCNDGNCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKL 282

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
            +  +   + KEM D G +    TY   ++  G+A   +D   V+ +M + G +  V L 
Sbjct: 283 DKVEKALDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLI 342

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEM 437
           N+L+ +   VG  +   ++F  M+S + C+P+  T++++I  +  C+   SEA + F +M
Sbjct: 343 NSLINILGKVGRLEVTLKLFRKMESWQ-CKPNVVTYNTVIKALFECKAPASEAASWFEKM 401

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 497
              G  P+ F  + LI  + K  R +  +  L  + E G  P       L+N + +  + 
Sbjct: 402 KGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRY 461

Query: 498 ELGK--LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKK----AYCN 551
           E      +E  E        V  ++++     G    EA +LFN + K   K    AY N
Sbjct: 462 EAANELFLELKENCGHSSARVYAVMIKHFGKCGRL-SEAVDLFNEMEKLGSKPDVYAY-N 519

Query: 552 CLIDLCVNLNLLENACKLL 570
            L+   V   +++ A  LL
Sbjct: 520 ALMSGMVRAGMIDEAQSLL 538



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 138/297 (46%), Gaps = 2/297 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP-NKAVEW 222
           +V+L N  + +  K   L+   +LF  M     KP+ VT++T+I        P ++A  W
Sbjct: 338 DVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASW 397

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           FE+M   G  P + TYS +ID + +   +E A  L +    + +   P A+ +LI   G 
Sbjct: 398 FEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGK 457

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
              ++    ++ E+K      +   Y  ++   G+  R  +   ++ EM   G  P+   
Sbjct: 458 VKRYEAANELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYA 517

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +L+    RA   ++  S+ R M E G    +  +N +L   A  G  D A E+F  MK
Sbjct: 518 YNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMK 577

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           SS   +PD+ ++++++   S  G   EA  +  EM   GFE N    TS+++  GK 
Sbjct: 578 SS-IIKPDAVSYNTVLGCLSHAGLFEEAAKLMREMNLKGFEYNNITYTSILEAVGKV 633



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 140/294 (47%), Gaps = 3/294 (1%)

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG- 230
           +K+  K + ++KA  +F  +  R  KP   T++++I   +      K  E +  M + G 
Sbjct: 170 VKLLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGN 229

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           C PD +TYS++I A+G+ G+ + A  L+D  +          ++TL+ +Y      +  L
Sbjct: 230 CFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKAL 289

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
           +V +EMK  G    + TY   +  +G+A R      ++ +M  +G  P+     SL+   
Sbjct: 290 DVIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINIL 349

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQP 409
           G+    E TL ++R+M+    + +V  YNT++ A+        EA   FE MK      P
Sbjct: 350 GKVGRLEVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGC-GIAP 408

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            S+T+S +I       ++ +A  +  EM E GF P      SLI   GK +R +
Sbjct: 409 SSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYE 462



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 148/328 (45%), Gaps = 10/328 (3%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y   + ++ K   ++KA  +  +M D+G      T++  I         + A   F  M
Sbjct: 271 IYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDM 330

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIK-LYGTA 283
              GC PD +  +S+I+  G+ G +E+   L+ +   E W+  PN   ++T+IK L+   
Sbjct: 331 IKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKM--ESWQCKPNVVTYNTVIKALFECK 388

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                  + +E+MK  G+ P+  TY+ L+D   +  R  +   + +EM + G  P    Y
Sbjct: 389 APASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAY 448

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            SL+ + G+ +  E    ++ E+KE     S  +Y  ++      G   EA ++F +M+ 
Sbjct: 449 CSLINSLGKVKRYEAANELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEK 508

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               +PD + ++++++     G + EA+++   M E G  P+L     ++    +    D
Sbjct: 509 L-GSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPD 567

Query: 464 DVVRALNRLPELGITPD----DRFCGCL 487
             +    ++    I PD    +   GCL
Sbjct: 568 RAIEMFAKMKSSIIKPDAVSYNTVLGCL 595



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 142/322 (44%), Gaps = 10/322 (3%)

Query: 117 DDVFSVLRCLGDDFLEQDCVII---LNNMTNPDTAALALTYF--TNKLKASKEVILYNVT 171
           DD + V   +  D  + D V+I   +N +       + L  F      +    V+ YN  
Sbjct: 321 DDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPNVVTYNTV 380

Query: 172 MKVFRKCR-DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
           +K   +C+    +A   F+ M   G+ P + T+S LI      N   KA+   E M   G
Sbjct: 381 IKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKG 440

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
             P    Y S+I++ G+    E A  L+   +          ++ +IK +G  G     +
Sbjct: 441 FPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAV 500

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
           +++ EM+ +G KP++  YN L+  M RA    + +++ + M +NG SP+ N++  +L   
Sbjct: 501 DLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGL 560

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
            R    +  + ++ +MK   ++     YNT+L   +  G  +EA ++  +M    N +  
Sbjct: 561 ARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKLMREM----NLKGF 616

Query: 411 SWTFSSMITICSCRGKVSEAEA 432
            +   +  +I    GKV E  A
Sbjct: 617 EYNNITYTSILEAVGKVDEDRA 638



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 39/224 (17%)

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS-LLRAYGRARYGEDTLSVYREMKEKG 370
           LD  G     W  KTI ++M  +      + Y S +++  G+A+     LSV+ ++K + 
Sbjct: 137 LDEAGFYGEMW--KTI-QDMVRSSTCVISSVYLSEIVKLLGKAKMVNKALSVFYQIKGRK 193

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
            + + T YN+++ M    G+ ++  EI+ +M +  NC PD+ T+S++I+     G    A
Sbjct: 194 CKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFGKLGHYDSA 253

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCY---------------------------------- 456
             +F+EM E G  P   + T+L+  Y                                  
Sbjct: 254 IRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYTEWIKG 313

Query: 457 -GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 499
            GKA R DD  R    + + G  PD      L+N++ +  + E+
Sbjct: 314 LGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEV 357


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 168/332 (50%), Gaps = 8/332 (2%)

Query: 163 KEVILYNVT-----MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLP 216
           K V+ YNVT     ++ + +   +++AE+LFD+ML +G++PD   ++++I+   +  N+ 
Sbjct: 255 KNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNM- 313

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
            +A   F+ M      P+A TY ++I+   +AG ++ A  + +  +++   ++   F+TL
Sbjct: 314 KRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTL 373

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           +  Y   G  D  L +   M+  G + +  T N +     R+ R  + K +   M + G+
Sbjct: 374 MDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGV 433

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
           +PN  +++ L+  Y + +   +   +++ M++KG   SV  YN  +      G  +EA++
Sbjct: 434 APNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYK 493

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           +  +M+      PD++T++S+I      G V  A  +FNEM + G   N+   T +I   
Sbjct: 494 LINEMQ-ERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGL 552

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
            K  R D+  +  + + + GI PDD     L+
Sbjct: 553 SKDGRADEAFKLYDEMNKEGIVPDDGIYSSLI 584



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 196/463 (42%), Gaps = 20/463 (4%)

Query: 129 DFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLF 188
           DFL Q      N    PD  A  L  F+   +A K   + NV   +          ER+ 
Sbjct: 56  DFLRQ------NPSRKPDLPA-HLILFSRLYRARKFAEMKNVLKFIVNDGNLWSNVERIV 108

Query: 189 DDMLDRGVKPDNV-TFSTLISCARMNN-LPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
             +     +P  V  F  ++    M+N + + ++E F+     G + D  +    + A  
Sbjct: 109 SSIGGEFNEPSIVEKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFLLALK 168

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           R+GN+E+      +  +    I   +++ ++      G       + +E+   G KP++I
Sbjct: 169 RSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVI 228

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TYN LL+     K    V  I   M  N +  N  TY  L+  Y R+   E+   ++ EM
Sbjct: 229 TYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEM 288

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
            +KG++  V +Y +++      G    AF +F++M +     P+++T+ ++I      G+
Sbjct: 289 LKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEM-TERRLVPNAYTYGALINGACKAGE 347

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
           +  AE M N+M   G + N  +  +L+  Y K    D+ +R  N + + G   D   C  
Sbjct: 348 MKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNI 407

Query: 487 LLNVMTQT-PKEELGKLVECVEKSNSKLGYV-VKLLLEEQDIEGDFKKEATELFNSISKD 544
           + +   ++  +EE  +L+  +E+       V   +L++    E +F  EA  LF  + K 
Sbjct: 408 IASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNF-AEARRLFKVMEKK 466

Query: 545 VKKAYC---NCLIDLCVNLNLLENACKLL----ELGLTLEVYT 580
            K       N  I+       +E A KL+    E GL  + YT
Sbjct: 467 GKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYT 509



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 39/223 (17%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFERM 226
           N+    F +    ++A+RL   M +RGV P+ V+FS LI   C   N    +A   F+ M
Sbjct: 406 NIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQN--FAEARRLFKVM 463

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G  P  +TY++ I+ Y + G +E A+ L +  +      D   +++LI     +GN 
Sbjct: 464 EKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNV 523

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  L ++ EM  +G+  N++TY  ++                     +GLS +       
Sbjct: 524 DRALELFNEMPQLGLNRNVVTYTVII---------------------SGLSKD------- 555

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
               GRA   ++   +Y EM ++G+     +Y++L+A    VG
Sbjct: 556 ----GRA---DEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVG 591


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 151/318 (47%), Gaps = 13/318 (4%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K R  D A +L D M  R V+    TF+ L+       L  +AV  F RM  +GC PD +
Sbjct: 158 KVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKI 217

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            +S +I +  +      A   +D  + +++  D   +++L+  +  AGN      V+ EM
Sbjct: 218 AFSVVISSLSKKRRAIEAQSFFDSLK-DRFEPDVVVYTSLVHGWCRAGNISEAERVFGEM 276

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           K  G++PN+ TY+ ++D + R+ +  +   ++ EM D G  PN  T+ +L+R + +A   
Sbjct: 277 KMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRT 336

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
           E  L VY +MK  G       YN L+ + C D    +EA +I   +K  + C  ++ +F+
Sbjct: 337 EKVLQVYNQMKRLGCPPDAITYNFLIESHCRD-DNLEEAVKILNSVK--KGCNLNASSFN 393

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
            +    S  G V+ A  MF +M +    PN      L++ +   + TD V++    + E 
Sbjct: 394 PIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDEN 453

Query: 476 GITPD--------DRFCG 485
            I P+          FCG
Sbjct: 454 EIEPNANTYRVLISTFCG 471



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/307 (19%), Positives = 148/307 (48%), Gaps = 2/307 (0%)

Query: 137 IILNNMTNPDTAALALTYFTN-KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           +++++++    A  A ++F + K +   +V++Y   +  + +  ++ +AER+F +M   G
Sbjct: 221 VVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAG 280

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           ++P+  T+S +I     +    +A + F  M   GCDP+A+T+++++  + +AG  E   
Sbjct: 281 IQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVL 340

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            +Y++ +      D   ++ LI+ +    N +  + +   +K  G   N  ++N +   +
Sbjct: 341 QVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKK-GCNLNASSFNPIFGCI 399

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +         ++ +M D    PN  TY  L+R +   +  +  L + +EM E  ++ + 
Sbjct: 400 SKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNA 459

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y  L++    +G+ + A+  F++M   +  +P    +  ++      G++ + E +  
Sbjct: 460 NTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVE 519

Query: 436 EMLEAGF 442
           +M+  GF
Sbjct: 520 KMVNRGF 526



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 112/246 (45%), Gaps = 21/246 (8%)

Query: 308 YNNLLDTMGRAKR---PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           Y  ++D  G+ ++    WQ+  + K  T N   P   T+  L+R Y +A    + +  + 
Sbjct: 149 YMEMIDLAGKVRQFDLAWQLIDLMK--TRNVEIP-VETFTILVRRYVKAGLAAEAVHAFN 205

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
            M++ G +     ++ +++  +      EA   F+ +K  +  +PD   ++S++      
Sbjct: 206 RMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLK--DRFEPDVVVYTSLVHGWCRA 263

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPELGITPDD 481
           G +SEAE +F EM  AG +PN++  + +I      G+  R  DV    + + ++G  P+ 
Sbjct: 264 GNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDV---FSEMIDVGCDPNA 320

Query: 482 RFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG----YVVKLLLEEQDIEGDFKKEATEL 537
                L+ V  +  + E  K+++ V     +LG     +    L E     D  +EA ++
Sbjct: 321 ITFNNLMRVHVKAGRTE--KVLQ-VYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKI 377

Query: 538 FNSISK 543
            NS+ K
Sbjct: 378 LNSVKK 383


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 144/302 (47%), Gaps = 1/302 (0%)

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           R+LD A  +FD M+  G  P++VT+STLI+        ++A++  E M   G +P   TY
Sbjct: 247 RNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTY 306

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           +  I A     + E A  L  R +    R +   ++ LI      G  +  + +Y +M  
Sbjct: 307 TLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLK 366

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
            G+ PN +TYN L++ +    R      I+  M  +G   N  TY  +++        E 
Sbjct: 367 EGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEK 426

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            + ++ +M + G   +V  YNTL+      G  + A  + + MK +  C+PD WT++ ++
Sbjct: 427 AMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKEN-GCEPDEWTYNELV 485

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
           +  S  GK+  A   F EM+E G  PN    T+LI  + K  + D  +  L R+ E+G  
Sbjct: 486 SGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCN 545

Query: 479 PD 480
           P+
Sbjct: 546 PN 547



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 143/303 (47%), Gaps = 5/303 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           ++ A  L+  ML+ G++P  +TF+TLI+         +A     ++  +   PD  TY+S
Sbjct: 179 VEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTS 238

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKA 298
           +I  + R  N+++AFG++DR   E    DPN+  +STLI      G  D  L++ EEM  
Sbjct: 239 LILGHCRNRNLDLAFGVFDRMVKEG--CDPNSVTYSTLINGLCNEGRVDEALDMLEEMIE 296

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
            G++P + TY   +  +   +   +   +   M   G  PN  TY +L+    R    E 
Sbjct: 297 KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEV 356

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            + +Y +M ++G+  +   YN L+      G    A +IF  M+       ++ T++ +I
Sbjct: 357 AIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWME-GHGSLANTQTYNEII 415

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 G + +A  +F +ML+ G  P +    +LI  Y      ++  R L+ + E G  
Sbjct: 416 KGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCE 475

Query: 479 PDD 481
           PD+
Sbjct: 476 PDE 478



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 148/309 (47%), Gaps = 5/309 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +K      D++KA  LF+ ML  G  P  VT++TLI+        N A    + M 
Sbjct: 411 YNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMK 470

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC+PD  TY+ ++  + + G +E A   +          +P +++ LI  +   G  D
Sbjct: 471 ENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVD 530

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L++ + M+ +G  PN+ +YN +++ + +  R  + + I  +M + GL PN  TY +L+
Sbjct: 531 IALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLI 590

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               R    +    ++ +M+++    ++  Y++L+      G  DEA     +  S   C
Sbjct: 591 DGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA-----ERMSEIGC 645

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P   T+S++++    +G+  EAE +  +M E GF P+  +  SL+  + K    D  ++
Sbjct: 646 EPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALK 705

Query: 468 ALNRLPELG 476
             + +   G
Sbjct: 706 IFHSIEAKG 714



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 165/369 (44%), Gaps = 46/369 (12%)

Query: 151 ALTYFTNKLKASK--EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+  F   LK      V+ YN  +  +    +++ A RL D M + G +PD  T++ L+S
Sbjct: 427 AMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVS 486

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                     A  +F+ M   G +P+ ++Y+++ID + + G V++A  L  R   E+   
Sbjct: 487 GFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRM--EEMGC 544

Query: 269 DPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           +PN  +++ +I        F     + ++M   G+ PN+ITY  L+D + R  R      
Sbjct: 545 NPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFK 604

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           I+ +M      PN  TY+SL+  YG  + G+   +    M E G + ++  Y+TL++   
Sbjct: 605 IFHDMEKRKCLPNLYTYSSLI--YGLCQEGKADEA--ERMSEIGCEPTLDTYSTLVSGLC 660

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT--------------------------- 419
             G   EA ++ +DMK    C PD   + S++                            
Sbjct: 661 RKGRFYEAEQLVKDMKERGFC-PDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHL 719

Query: 420 ------ICS-CR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
                 IC+ C+ G+V EA+A+F+ MLE  +  +  V T L+    K    D  ++ L+ 
Sbjct: 720 SIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHI 779

Query: 472 LPELGITPD 480
           +     TP+
Sbjct: 780 MESKNFTPN 788



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 136/319 (42%), Gaps = 50/319 (15%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +  F K   L+ A   F +M++ G+ P+ V+++ LI     +   + A+   +RM 
Sbjct: 481 YNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRME 540

Query: 228 SFGCDPDA-----------------------------------LTYSSMIDAYGRAGNVE 252
             GC+P+                                    +TY+++ID   R G  +
Sbjct: 541 EMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQ 600

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            AF ++     EK +  PN ++    +YG     +G  +  E M  IG +P + TY+ L+
Sbjct: 601 FAFKIFHDM--EKRKCLPNLYTYSSLIYGLCQ--EGKADEAERMSEIGCEPTLDTYSTLV 656

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
             + R  R ++ + + K+M + G  P+   Y SLL A+ +    +  L ++  ++ KG Q
Sbjct: 657 SGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQ 716

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE- 431
           L +++Y  L+      G  +EA  +F++M   E      W    ++      G + E E 
Sbjct: 717 LHLSIYRALICALCKAGQVEEAQALFDNMLEKE------WNADEIVWTVLVDGLLKEGEL 770

Query: 432 ----AMFNEMLEAGFEPNL 446
                + + M    F PN+
Sbjct: 771 DLCMKLLHIMESKNFTPNI 789



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 119/277 (42%), Gaps = 8/277 (2%)

Query: 188 FDDMLDRGVK-----PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           F  ML+R V+     P +     +I   R      +  ++   +   G      + ++++
Sbjct: 111 FISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLL 170

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
               +   VE A  LY +  N   +     F+TLI +    G       +  ++    + 
Sbjct: 171 IQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLS 230

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P++ TY +L+    R +       ++  M   G  PN  TY++L+         ++ L +
Sbjct: 231 PDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDM 290

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
             EM EKG++ +V  Y   +     + + +EA E+   MK    C+P+  T++++I+  S
Sbjct: 291 LEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMK-KRGCRPNVQTYTALISGLS 349

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ--CYG 457
             GK+  A  ++++ML+ G  PN     +LI   C G
Sbjct: 350 RLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVG 386



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +AE+L  DM +RG  PD   + +L+     N   + A++ F  + + G       Y ++I
Sbjct: 667 EAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALI 726

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            A  +AG VE A  L+D    ++W  D   ++ L+      G  D C+ +   M++    
Sbjct: 727 CALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFT 786

Query: 303 PNMITY 308
           PN+ TY
Sbjct: 787 PNIQTY 792



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +V     E++  G   +  +  +LL    +    E   ++Y++M   G+Q S+  +NTL+
Sbjct: 146 RVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLI 205

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAG 441
            + +  G   EA E+        +  PD +T++S+I +  CR + +  A  +F+ M++ G
Sbjct: 206 NILSKKGKVREA-ELILSQIFQYDLSPDVFTYTSLI-LGHCRNRNLDLAFGVFDRMVKEG 263

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
            +PN    ++LI       R D+ +  L  + E GI P
Sbjct: 264 CDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEP 301


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 154/316 (48%), Gaps = 8/316 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  + +  K R  D A  + D M  RGV+    TFS L+       L  +AV  F RM 
Sbjct: 181 YNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFNRME 240

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGN 285
            +GC PD + +S +I +  +      A   +D   + K R +P+   +++L+  +  AG+
Sbjct: 241 DYGCTPDMVAFSIVISSLCKKRRANEAQSFFD---SLKHRFEPDVVVYTSLVHGWCRAGD 297

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 V+ +MK  G+KPN+ TY+ ++D++ R  +  +   ++ EM D G  PN  T+ S
Sbjct: 298 ISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNS 357

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSS 404
           L+R + +A   E  L VY +MK  G       YN ++ + C D    +EA +I  ++   
Sbjct: 358 LMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDENL-EEAAKIL-NLMVK 415

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +   P++ TF+ +    +    V+ A  M+  M E   +PN      L++ + +++ TD 
Sbjct: 416 KGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNTLTYNILMRMFAESRSTDM 475

Query: 465 VVRALNRLPELGITPD 480
           V++    + E  + P+
Sbjct: 476 VLKMKKEMDESQVEPN 491



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 155/308 (50%), Gaps = 3/308 (0%)

Query: 137 IILNNMTNPDTAALALTYFTN-KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           I+++++     A  A ++F + K +   +V++Y   +  + +  D+ KAE +F DM   G
Sbjct: 253 IVISSLCKKRRANEAQSFFDSLKHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAG 312

Query: 196 VKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           +KP+  T+S +I S  R   +  +A + F  M   GCDP+A+T++S++  + +AG  E  
Sbjct: 313 IKPNVYTYSIVIDSLCRCGQI-TRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKV 371

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             +Y++ +      D  +++ +I+ +    N +    +   M   GV PN  T+N +   
Sbjct: 372 LKVYNQMKRLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGC 431

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           + +         +Y  M +    PN  TY  L+R +  +R  +  L + +EM E  ++ +
Sbjct: 432 IAKLHDVNGAHRMYARMKELNCQPNTLTYNILMRMFAESRSTDMVLKMKKEMDESQVEPN 491

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           V  Y  L++M  D+ + + A+++  +M   +  +P+   + +++ +    G++ + E + 
Sbjct: 492 VNTYRILISMFCDMKHWNNAYKLMMEMVEEKCLRPNLSVYETVLELLRKAGQLKKHEELV 551

Query: 435 NEMLEAGF 442
           ++M+  GF
Sbjct: 552 DKMVARGF 559



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 113/212 (53%), Gaps = 4/212 (1%)

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
           P  ++ ++ L G    FD   +V + MK+ GV+  + T++ L+    RA    +    + 
Sbjct: 178 PEPYNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFN 237

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
            M D G +P+   ++ ++ +  + R   +  S +  +K +  +  V +Y +L+      G
Sbjct: 238 RMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKHR-FEPDVVVYTSLVHGWCRAG 296

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
              +A E+F DMK +   +P+ +T+S +I ++C C G+++ A  +F+EM++AG +PN   
Sbjct: 297 DISKAEEVFSDMKMA-GIKPNVYTYSIVIDSLCRC-GQITRAHDVFSEMIDAGCDPNAVT 354

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             SL++ + KA RT+ V++  N++  LG   D
Sbjct: 355 FNSLMRVHVKAGRTEKVLKVYNQMKRLGCPAD 386



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 95/198 (47%), Gaps = 16/198 (8%)

Query: 308 YNNLLDTMGRAKR---PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           YN +LD  G+ ++    W V  +   M   G+    +T+++L+R Y RA    + +  + 
Sbjct: 181 YNEMLDLAGKLRQFDLAWHVIDL---MKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFN 237

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
            M++ G    +  ++ +++        +EA   F+ +K     +PD   ++S++      
Sbjct: 238 RMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLK--HRFEPDVVVYTSLVHGWCRA 295

Query: 425 GKVSEAEAMFNEMLEAGFEPNLF----VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           G +S+AE +F++M  AG +PN++    V+ SL +C G+  R  DV    + + + G  P+
Sbjct: 296 GDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRC-GQITRAHDV---FSEMIDAGCDPN 351

Query: 481 DRFCGCLLNVMTQTPKEE 498
                 L+ V  +  + E
Sbjct: 352 AVTFNSLMRVHVKAGRTE 369


>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 617

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 156/346 (45%), Gaps = 39/346 (11%)

Query: 185 ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244
           ERL  D+ +  ++PD   FS LIS      LP+ A+E      + G  P +   +++I A
Sbjct: 213 ERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISA 272

Query: 245 YGRAGNVEMAFGLY------------DRARNEKW----RI-------------------- 268
            G AG V  A  L+             RA N       RI                    
Sbjct: 273 LGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAP 332

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTI 327
           D   +S L+  Y  AG ++    + +EM+A GVKP+   ++ +L    R +  WQ    +
Sbjct: 333 DEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGF-RDRGDWQKAFAV 391

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            +EM  +G+ P+ + Y  ++  +G+       +  + +M+E+G++  V  +NTL+     
Sbjct: 392 LREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCK 451

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G  D A E+FE+M+ S NC P + T++ MI +   +      EAM +EM E G  PN+ 
Sbjct: 452 GGRHDRAAELFEEMRES-NCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNII 510

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
             T+L+  YG++ R  + +  +  +   G+ P       L+N   Q
Sbjct: 511 TYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQ 556



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 17/278 (6%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +  + +    + A  L  +M   GVKP +  FS +++  R      KA      M 
Sbjct: 337 YSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQ 396

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  PD   Y+ MID +G+   +  A   +++ R E    D   ++TLI  +   G  D
Sbjct: 397 ASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHD 456

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++EEM+     P   TYN +++ +G  +    V+ +  EM + GL PN  TY +L+
Sbjct: 457 RAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLV 516

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YGR+   ++ +     MK  G++ S T+Y+ L+   A  G                  
Sbjct: 517 DVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRG-----------------L 559

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
           +PD  T+++++       +  +   ++ EM+ +G  P+
Sbjct: 560 RPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPD 597



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 132/286 (46%), Gaps = 4/286 (1%)

Query: 183 KAERLFDDMLDRG-VKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +AE LF +    G +KP    ++ L+    R+ +L N A +  + M   G  PD  TYS 
Sbjct: 281 EAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKN-AEQVLDEMSQCGVAPDEATYSL 339

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           ++DAY RAG  E A  L      +  +     FS ++  +   G++     V  EM+A G
Sbjct: 340 LVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASG 399

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           V+P+   YN ++DT G+          + +M + G+ P+  T+ +L+ A+ +    +   
Sbjct: 400 VRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAA 459

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            ++ EM+E       T YN ++ +  +  + +    +  +MK  +   P+  T+++++ +
Sbjct: 460 ELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMK-EQGLVPNIITYTTLVDV 518

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
               G+  EA      M   G +P+  +  +L+  Y +     DV+
Sbjct: 519 YGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLRPDVI 564



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 19/199 (9%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
            YNV +  F K   L  A   F+ M + G++PD VT++TLI         ++A E FE M
Sbjct: 406 FYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEM 465

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
               C P   TY+ MI+  G   + E    +    + +    +   ++TL+ +YG +G +
Sbjct: 466 RESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRY 525

Query: 287 DGCLNVYEEMKAIGVKP-------------------NMITYNNLLDTMGRAKRPWQVKTI 327
              ++  E MKA G+KP                   ++ITY  L+  + R ++  +V  I
Sbjct: 526 KEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLRPDVITYTTLMKALIRVEQFDKVPVI 585

Query: 328 YKEMTDNGLSPNWNTYASL 346
           Y+EM  +G +P+    A L
Sbjct: 586 YEEMITSGCAPDRKARAML 604



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 118/262 (45%), Gaps = 13/262 (4%)

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR---EMKEKGMQLSVTLYNTLLAMCAD 387
           + ++   P+  +Y+ LL +    R   D   + R   +++E  ++    L++ L++  A 
Sbjct: 181 LREHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFAR 240

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNL 446
               D A E+    ++     P S   +++I+     G+V+EAEA+F E   AG  +P  
Sbjct: 241 AALPDAALELLASAQAI-GLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRT 299

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVEC 505
               +L++ Y +     +  + L+ + + G+ PD+     L++  T+  + E  + L++ 
Sbjct: 300 RAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKE 359

Query: 506 VEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSISKDVK--KAYCNCLIDLCVNLNL 562
           +E    K   YV   +L      GD++K    L    +  V+  + + N +ID     N 
Sbjct: 360 MEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNC 419

Query: 563 LENAC----KLLELGLTLEVYT 580
           L +A     K+ E G+  +V T
Sbjct: 420 LGHAMDAFNKMREEGIEPDVVT 441


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 179/363 (49%), Gaps = 4/363 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALA+     KL    +++  +  +  +   + + +A  L D M     +P+ VTF+TLI 
Sbjct: 118 ALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIH 177

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
              ++N  ++AV   +RM + GC PD  TY ++++   + G++++A  L  +    K   
Sbjct: 178 GLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEA 237

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   ++T+I       N +  LN++ EM   G++PN++TYN+L+  +    R      + 
Sbjct: 238 DVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLL 297

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            +M +  ++PN  T+++L+ A+ +     +   +Y EM ++ +   +  Y++L+      
Sbjct: 298 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 357

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
              DEA  +FE M  S++C P+  T++++I   C  + +V E   +F EM + G   N  
Sbjct: 358 DRLDEAKHMFELM-ISKDCFPNVVTYNTLIKGFCKAK-RVEEGMELFREMSQRGLVGNTV 415

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV-ECV 506
              +LIQ   +A   D   +   ++   G+ PD      LL+ + +  K E   +V E +
Sbjct: 416 TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 475

Query: 507 EKS 509
           +KS
Sbjct: 476 QKS 478



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 167/334 (50%), Gaps = 5/334 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL+L     K K   +V++Y   +      ++++ A  LF +M ++G++P+ VT+++LI 
Sbjct: 223 ALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 282

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           C       + A      M     +P+ +T+S++IDA+ + G +  A  LYD     K  I
Sbjct: 283 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI--KRSI 340

Query: 269 DPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           DP+ F  S+LI  +      D   +++E M +    PN++TYN L+    +AKR  +   
Sbjct: 341 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGME 400

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +++EM+  GL  N  TY +L++   +A   +    ++++M   G+   +  Y+ LL    
Sbjct: 401 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 460

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G  ++A  +FE ++ S+  +PD +T++ MI      GKV +   +F  +   G +PN+
Sbjct: 461 KYGKLEKALVVFEYLQKSK-MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV 519

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            + T++I  + +    ++       + E G  P+
Sbjct: 520 IIYTTMISGFCRKGLKEEADALFREMKEDGTLPN 553



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 176/369 (47%), Gaps = 20/369 (5%)

Query: 94  SYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVI---ILNNMTNPDTAAL 150
           +Y T  N L K   D+D          S+L+ +    +E D VI   I++ + N      
Sbjct: 206 TYGTVVNGLCK-RGDIDL-------ALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVND 257

Query: 151 ALTYFT---NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AL  FT   NK      V+ YN  ++          A RL  DM++R + P+ VTFS LI
Sbjct: 258 ALNLFTEMDNK-GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 316

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                     +A + ++ M     DPD  TYSS+I+ +     ++ A  +++   ++   
Sbjct: 317 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF 376

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            +   ++TLIK +  A   +  + ++ EM   G+  N +TYN L+  + +A      + I
Sbjct: 377 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 436

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
           +K+M  +G+ P+  TY+ LL   G  +YG  E  L V+  +++  M+  +  YN ++   
Sbjct: 437 FKKMVSDGVPPDIITYSILLD--GLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 494

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G  ++ +++F  + S +  +P+   +++MI+    +G   EA+A+F EM E G  PN
Sbjct: 495 CKAGKVEDGWDLFCSL-SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPN 553

Query: 446 LFVLTSLIQ 454
                +LI+
Sbjct: 554 SGTYNTLIR 562



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 154/329 (46%), Gaps = 12/329 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           ++ +N  +    K    D    L + M +  +  D  +++ LI+C  R + LP  A+   
Sbjct: 64  IVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLP-LALAVL 122

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M   G +PD +T SS+++ Y     +  A  L D+    +++ +   F+TLI      
Sbjct: 123 GKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLH 182

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                 + + + M A G +P++ TY  +++ + +        ++ K+M    +  +   Y
Sbjct: 183 NKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 242

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +++ A    +   D L+++ EM  KG++ +V  YN+L+    + G   +A  +  DM  
Sbjct: 243 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-I 301

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                P+  TFS++I      GK+ EAE +++EM++   +P++F  +SLI  +    R D
Sbjct: 302 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 361

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMT 492
           +       + EL I+ D     C  NV+T
Sbjct: 362 EA----KHMFELMISKD-----CFPNVVT 381



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 152/323 (47%), Gaps = 7/323 (2%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           L+ S ++  YN+ +  F +   L  A  +   M+  G +PD VT S+L++        ++
Sbjct: 93  LRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISE 152

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           AV   ++M      P+ +T++++I           A  L DR      + D   + T++ 
Sbjct: 153 AVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVN 212

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
                G+ D  L++ ++M+   ++ +++ Y  ++D +   K       ++ EM + G+ P
Sbjct: 213 GLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRP 272

Query: 339 NWNTYASLLRA---YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           N  TY SL+R    YGR       LS   +M E+ +  +V  ++ L+      G   EA 
Sbjct: 273 NVVTYNSLIRCLCNYGRWSDASRLLS---DMIERKINPNVVTFSALIDAFVKEGKLVEAE 329

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           +++++M    +  PD +T+SS+I       ++ EA+ MF  M+     PN+    +LI+ 
Sbjct: 330 KLYDEM-IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG 388

Query: 456 YGKAQRTDDVVRALNRLPELGIT 478
           + KA+R ++ +     + + G+ 
Sbjct: 389 FCKAKRVEEGMELFREMSQRGLV 411



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 139/299 (46%), Gaps = 42/299 (14%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K +  V+ ++  +  F K   L +AE+L+D+M+ R + PD  T+S+LI+   M++  ++A
Sbjct: 304 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 363

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              FE M S  C P+ +TY+++I  + +A  VE    L+          +   ++TLI+ 
Sbjct: 364 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG 423

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM------------------------ 315
              AG+ D    ++++M + GV P++ITY+ LLD +                        
Sbjct: 424 LFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 483

Query: 316 --------------GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
                         G+ +  W    ++  ++  G+ PN   Y +++  + R    E+  +
Sbjct: 484 IYTYNIMIEGMCKAGKVEDGWD---LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 540

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
           ++REMKE G   +   YNTL+      G    + E+ ++M+S      D+ T S +I +
Sbjct: 541 LFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSC-GFVGDASTISMVINM 598



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 4/225 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +K F K + +++   LF +M  RG+  + VT++TLI         + A + F+
Sbjct: 379 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 438

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M S G  PD +TYS ++D   + G +E A  +++  +  K   D   ++ +I+    AG
Sbjct: 439 KMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAG 498

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +   +++  +   GVKPN+I Y  ++    R     +   +++EM ++G  PN  TY 
Sbjct: 499 KVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYN 558

Query: 345 SLLRAYGRARYGEDTLS--VYREMKEKGMQLSVTLYNTLLAMCAD 387
           +L+RA  R R G+   S  + +EM+  G     +  + ++ M  D
Sbjct: 559 TLIRA--RLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHD 601



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 62/131 (47%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL +  +  K K   ++  YN+ ++   K   ++    LF  +  +GVKP+ + ++T+IS
Sbjct: 468 ALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMIS 527

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 L  +A   F  M   G  P++ TY+++I A  R G+   +  L    R+  +  
Sbjct: 528 GFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVG 587

Query: 269 DPNAFSTLIKL 279
           D +  S +I +
Sbjct: 588 DASTISMVINM 598


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 147/313 (46%), Gaps = 2/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  M        +D AER+F+ M    +KPD VT++T+I          KA+E    M 
Sbjct: 225 YNFLMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVME 284

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G + D +TY +MI A     +      LY     +  ++ P+AFS +I      G  +
Sbjct: 285 TKGLEADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLN 344

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V+E M   G KPN+  Y  L+D   +         +   M D G +P+  TY+ ++
Sbjct: 345 EGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVV 404

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +    E+ +  ++  +  G+ ++   Y++L+      G  DEA  +FE+M S + C
Sbjct: 405 NGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEM-SEKGC 463

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEM-LEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             DS+ ++++I   +  GKV EA A+F  M  E G +  ++  T LI    K  R ++ +
Sbjct: 464 TRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYTILISGMFKEHRNEEAL 523

Query: 467 RALNRLPELGITP 479
           +  + + + GITP
Sbjct: 524 KLWDMMIDKGITP 536



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 165/361 (45%), Gaps = 28/361 (7%)

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           Y S++D    A +V+    +    R  ++ +  +  ++LIK +G  G  +  L V+ +MK
Sbjct: 155 YVSLVDVLALAKDVDRIRFICSEIRKFEFPMTVSPGNSLIKSFGKLGMVEELLWVWRKMK 214

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
             G++P + TYN L++ +  A      + +++ M    + P+  TY ++++ Y +A   +
Sbjct: 215 ENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQ 274

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE----IFEDMKSSENCQPDSWT 413
             L   R M+ KG++     Y T++  C    Y D  F     ++++M   +  Q     
Sbjct: 275 KALEKLRVMETKGLEADKITYMTMIQAC----YADSDFSSCVALYQEM-DEKGLQVPPHA 329

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           FS +I      GK++E  A+F  M+  G +PN+ + T LI  Y K    +D +R L+R+ 
Sbjct: 330 FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMI 389

Query: 474 ELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE--KSNSKLGYVVKLLLEEQDIEGDFK 531
           + G  PD      ++N + +      G++ E ++  ++    G  +  +     I+G  K
Sbjct: 390 DEGFNPDVVTYSVVVNGLCKN-----GRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGK 444

Query: 532 K----EATELFNSISKD--VKKAYC-NCLIDLCVNLNLLENACKLL-----ELGLTLEVY 579
                EA  LF  +S+    + +YC N LID       ++ A  L      E G    VY
Sbjct: 445 AGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVY 504

Query: 580 T 580
           T
Sbjct: 505 T 505



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 141/317 (44%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +K + K     KA      M  +G++ D +T+ T+I     ++  +  V  +
Sbjct: 256 DVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSSCVALY 315

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   G       +S +I    + G +   + +++    +  + +   ++ LI  Y   
Sbjct: 316 QEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKT 375

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+ +  + +   M   G  P+++TY+ +++ + +  R  +    ++    NGL+ N   Y
Sbjct: 376 GSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFY 435

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           +SL+   G+A   ++   ++ EM EKG       YN L+      G  DEA  +F+ M+ 
Sbjct: 436 SSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEE 495

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            E C    +T++ +I+      +  EA  +++ M++ G  P    L +L      + +  
Sbjct: 496 EEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGLCLSGKVA 555

Query: 464 DVVRALNRLPELGITPD 480
              + L+ L  +G+  D
Sbjct: 556 RACKILDELAPMGVILD 572


>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 668

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 156/346 (45%), Gaps = 39/346 (11%)

Query: 185 ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244
           ERL  D+ +  ++PD   FS LIS      LP+ A+E      + G  P +   +++I A
Sbjct: 213 ERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISA 272

Query: 245 YGRAGNVEMAFGLY------------DRARNEKW----RI-------------------- 268
            G AG V  A  L+             RA N       RI                    
Sbjct: 273 LGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAP 332

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTI 327
           D   +S L+  Y  AG ++    + +EM+A GVKP+   ++ +L    R +  WQ    +
Sbjct: 333 DEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGF-RDRGDWQKAFAV 391

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            +EM  +G+ P+ + Y  ++  +G+       +  + +M+E+G++  V  +NTL+     
Sbjct: 392 LREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCK 451

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G  D A E+FE+M+ S NC P + T++ MI +   +      EAM +EM E G  PN+ 
Sbjct: 452 GGRHDRAAELFEEMRES-NCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNII 510

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
             T+L+  YG++ R  + +  +  +   G+ P       L+N   Q
Sbjct: 511 TYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQ 556



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 145/315 (46%), Gaps = 1/315 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +  + +    + A  L  +M   GVKP +  FS +++  R      KA      M 
Sbjct: 337 YSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQ 396

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  PD   Y+ MID +G+   +  A   +++ R E    D   ++TLI  +   G  D
Sbjct: 397 ASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHD 456

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++EEM+     P   TYN +++ +G  +    V+ +  EM + GL PN  TY +L+
Sbjct: 457 RAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLV 516

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YGR+   ++ +     MK  G++ S T+Y+ L+   A  G  D A  + + MK ++  
Sbjct: 517 DVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMK-ADGL 575

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +      +S+I       +V EA ++   M E G  P++   T+L++   + ++ D V  
Sbjct: 576 EVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPV 635

Query: 468 ALNRLPELGITPDDR 482
               +   G  PD +
Sbjct: 636 IYEEMITSGCAPDRK 650



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 149/335 (44%), Gaps = 39/335 (11%)

Query: 183 KAERLFDDMLDRG-VKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +AE LF +    G +KP    ++ L+    R+ +L N A +  + M   G  PD  TYS 
Sbjct: 281 EAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKN-AEQVLDEMSQCGVAPDEATYSL 339

Query: 241 MIDAYGRAGNVEMA-----------------------FGLYDRARNEKW----------- 266
           ++DAY RAG  E A                        G  DR   +K            
Sbjct: 340 LVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASG 399

Query: 267 -RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
            R D + ++ +I  +G        ++ + +M+  G++P+++T+N L+D   +  R  +  
Sbjct: 400 VRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAA 459

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            +++EM ++   P   TY  ++   G   + E   ++  EMKE+G+  ++  Y TL+ + 
Sbjct: 460 ELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVY 519

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G   EA +  E MK ++  +P    + +++   + RG    A  +   M   G E +
Sbjct: 520 GRSGRYKEAIDCIEAMK-ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVS 578

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           + VL SLI  +G+ +R  +    L  + E G+ PD
Sbjct: 579 ILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPD 613



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 96/250 (38%), Gaps = 70/250 (28%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
            YNV +  F K   L  A   F+ M + G++PD VT++TLI         ++A E FE M
Sbjct: 406 FYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEM 465

Query: 227 PSFGCDP-----------------------------------DALTYSSMIDAYGRAGNV 251
               C P                                   + +TY++++D YGR+G  
Sbjct: 466 RESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRY 525

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV---------- 301
           + A    +  + +  +  P  +  L+  Y   G  D  LNV + MKA G+          
Sbjct: 526 KEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSL 585

Query: 302 -------------------------KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
                                    +P++ITY  L+  + R ++  +V  IY+EM  +G 
Sbjct: 586 INAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGC 645

Query: 337 SPNWNTYASL 346
           +P+    A L
Sbjct: 646 APDRKARAML 655



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 118/262 (45%), Gaps = 13/262 (4%)

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR---EMKEKGMQLSVTLYNTLLAMCAD 387
           + ++   P+  +Y+ LL +    R   D   + R   +++E  ++    L++ L++  A 
Sbjct: 181 LREHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFAR 240

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNL 446
               D A E+    ++     P S   +++I+     G+V+EAEA+F E   AG  +P  
Sbjct: 241 AALPDAALELLASAQAI-GLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRT 299

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVEC 505
               +L++ Y +     +  + L+ + + G+ PD+     L++  T+  + E  + L++ 
Sbjct: 300 RAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKE 359

Query: 506 VEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSISKDVK--KAYCNCLIDLCVNLNL 562
           +E    K   YV   +L      GD++K    L    +  V+  + + N +ID     N 
Sbjct: 360 MEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNC 419

Query: 563 LENAC----KLLELGLTLEVYT 580
           L +A     K+ E G+  +V T
Sbjct: 420 LGHAMDAFNKMREEGIEPDVVT 441



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 60/140 (42%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I Y   + V+ +     +A    + M   G+KP    +  L++      L + A+   +
Sbjct: 509 IITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVK 568

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M + G +   L  +S+I+A+G    V  AF +    R    R D   ++TL+K      
Sbjct: 569 AMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVE 628

Query: 285 NFDGCLNVYEEMKAIGVKPN 304
            FD    +YEEM   G  P+
Sbjct: 629 QFDKVPVIYEEMITSGCAPD 648


>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
          Length = 629

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 162/336 (48%), Gaps = 7/336 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDM--LDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           +V+ Y + +    K   +  A R+ D M   D  ++PD VT +T++     +    +A+ 
Sbjct: 171 DVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALA 230

Query: 222 WFE-RMPSF-GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           + E RM S  GC P+ +TY+ +IDA+ R GN+ MA+ L ++  NE    +    +T++  
Sbjct: 231 FVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGG 290

Query: 280 YGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
              AG     L  + E + +    K N +TY+ L+  +           ++ E    G S
Sbjct: 291 LCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHS 350

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P+   Y +++    +A   ED  S+   MKE G +L    YN L+A         EA+E+
Sbjct: 351 PDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYEL 410

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            ++MK     +PD  T++++++     G  +  + +  +M++ G +P++    +L+  Y 
Sbjct: 411 LQEMKEV-GIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYC 469

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           K  + D+ +R L  + E GI P++     L++ + +
Sbjct: 470 KVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCK 505



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 132/275 (48%), Gaps = 1/275 (0%)

Query: 197 KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256
           K + VT+STL+      N    A+E F    S G  PDA+ Y +MI    +AG +E A  
Sbjct: 315 KGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACS 374

Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           +    +   +++D  A++ LI  +           + +EMK +G++P++ TYN LL    
Sbjct: 375 MASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSC 434

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +A     V  +  +M D+G  P+  T+ +L+  Y +    ++ L + R M E G+  +  
Sbjct: 435 KAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNV 494

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
           +YNTL+      G  D A E+F++MK  ++   +  TF++++     +    +A  + ++
Sbjct: 495 IYNTLIDFLCKRGDVDLAIELFDEMK-EKSVPANVTTFNALLKGLRDKNMPEKAFELMDQ 553

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
           M E    P+   +  L++       TD + R + +
Sbjct: 554 MREERCFPDYVTVDVLMEWLPVIGETDRLKRFMQQ 588



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 129/284 (45%), Gaps = 9/284 (3%)

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
           S L + AR+ ++P  A  +          PD +TY  +++   +AG V  A  + D    
Sbjct: 141 SILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSR 200

Query: 264 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEE-MKAI-GVKPNMITYNNLLDTMGRAK 319
           +   I P+    +T++     +G     L   E+ M ++ G  PN +TYN L+D   R  
Sbjct: 201 QDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVG 260

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK---EKGMQLSVT 376
                  + ++M + G+  N  T  +++    RA      L  +RE +    +G   +VT
Sbjct: 261 NISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVT 320

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            Y+TL+           A E+F + K SE   PD+  + +MI+  +  G++ +A +M + 
Sbjct: 321 -YSTLVGALLHTNNVGMAMELFHE-KMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASS 378

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           M EAGF+ +      LI  + + +R  +    L  + E+GI PD
Sbjct: 379 MKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPD 422



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++YN  +    K  D+D A  LFD+M ++ V  +  TF+ L+   R  N+P KA E  ++
Sbjct: 494 VIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQ 553

Query: 226 MPSFGCDPDALTYSSMID 243
           M    C PD +T   +++
Sbjct: 554 MREERCFPDYVTVDVLME 571



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 4/125 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEW 222
           VI +   +  + K   +D+A R+   M + G+ P+NV ++TLI   C R +   + A+E 
Sbjct: 458 VITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDV--DLAIEL 515

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F+ M       +  T+++++         E AF L D+ R E+   D      L++    
Sbjct: 516 FDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWLPV 575

Query: 283 AGNFD 287
            G  D
Sbjct: 576 IGETD 580


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 156/329 (47%), Gaps = 3/329 (0%)

Query: 168 YNVTMKVFRKCRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           +  T  +   CR+  LD A  +FD M+  G  P++VT+STLI+         +A++  E 
Sbjct: 238 FTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEE 297

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G +P   TY+  + +   AG    A  L  + +      +   F+ LI      G 
Sbjct: 298 MVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGK 357

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F+  + +Y +M A G+ P  +TYN L++ +    R     TI+K M  +G  P+  TY  
Sbjct: 358 FEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNE 417

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +++ +      +  + ++ +M + G   +V  YNTL+      G  + A  + E MK + 
Sbjct: 418 IIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGN- 476

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +PD+WT++ +I+  S  GK+  A ++F  M+E G  PN    T++I  Y    + DD 
Sbjct: 477 GLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDA 536

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQT 494
           +    ++ E G  P  +    +++  ++T
Sbjct: 537 LALFWKMVESGNLPSSQTYNVMISGFSKT 565



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 148/302 (49%), Gaps = 5/302 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +D A  ++  ML+ G++P  +TF+T+I+         +A      +  +   P+A TY+S
Sbjct: 183 VDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTS 242

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKA 298
           +I  + R  N+++AF ++DR   +    DPN+  +STLI    + G  +  +++ EEM  
Sbjct: 243 LILGHCRNHNLDLAFAMFDRMVKDG--CDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQ 300

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
            G++P + TY   L ++  A    +   +  +M   G  PN  T+ +L+    R    E 
Sbjct: 301 KGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEI 360

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            + +Y +M   G+  +   YN L+      G  + AF IF+ M  S    P + T++ +I
Sbjct: 361 AIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWML-SHGSLPSTQTYNEII 419

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 G + +A  +F++ML+AG  PN+    +LI  Y K    ++ +R L  +   G+ 
Sbjct: 420 KCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLK 479

Query: 479 PD 480
           PD
Sbjct: 480 PD 481



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 146/314 (46%), Gaps = 11/314 (3%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
            + A  +F  ML  G  P   T++ +I C  +     KA+  F++M   G  P+ +TY++
Sbjct: 393 FETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNT 452

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I  Y + GN+  A  L +  +    + D   ++ LI  +   G  +   +++  M   G
Sbjct: 453 LIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHG 512

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           + PN +TY  ++D      +      ++ +M ++G  P+  TY  ++  + +     +  
Sbjct: 513 ISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAE 572

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
           +   +M ++G+  +V  Y + +      G T  AF+IF +M+   N  P+ +T+SS+I  
Sbjct: 573 NFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEME-KRNYFPNLYTYSSLIYG 631

Query: 421 CSCRGKVSEAEAMFN---EMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPE 474
               G+  +AE M+N    +   G EPN+   T+L++     G+    D +V ++ +   
Sbjct: 632 LCQEGRAEDAE-MYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQK--- 687

Query: 475 LGITPDDRFCGCLL 488
            G+ P +     LL
Sbjct: 688 KGLQPSEEIYRALL 701



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 161/380 (42%), Gaps = 8/380 (2%)

Query: 151 ALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+  F   LKA  S  VI YN  +  + K  +L+ A RL + M   G+KPD  T++ LIS
Sbjct: 431 AMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELIS 490

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                     A   F  M   G  P+ +TY+++ID Y     V+ A  L+ +        
Sbjct: 491 GFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLP 550

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
               ++ +I  +    +     N   +M   G+ PN+ITY + +D + R  R      I+
Sbjct: 551 SSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIF 610

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDT--LSVYREMKEKGMQLSVTLYNTLLAMCA 386
            EM      PN  TY+SL+    +    ED    ++   +   G + +V  Y TL+    
Sbjct: 611 HEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLC 670

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPN 445
             G   EA ++   M+  +  QP    + +++ I  C+  KV  A  +F  M   GF+ +
Sbjct: 671 GEGRCYEADQLVVSMQ-KKGLQPSEEIYRALL-IGECKNLKVESALNIFYSMDTLGFQLH 728

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVE 504
           L    +LI    K    ++       + E     D+     LL+ + +  + +L  KL+ 
Sbjct: 729 LSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLLH 788

Query: 505 CVEKSNSKLGYVVKLLLEEQ 524
            +E  N  L +   ++L  +
Sbjct: 789 VMESRNCTLNFQTYVMLARE 808



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 113/268 (42%), Gaps = 3/268 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A +L Y   +   S   + Y   +  +     +D A  LF  M++ G  P + T++ +IS
Sbjct: 501 ATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMIS 560

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                N  ++A  +  +M   G  P+ +TY+S ID   R G   +AF ++       +  
Sbjct: 561 GFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFP 620

Query: 269 DPNAFSTLIKLYGTAGNFDGC--LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           +   +S+LI      G  +     N+   +   G +PN+ TY  L+  +    R ++   
Sbjct: 621 NLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQ 680

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +   M   GL P+   Y +LL    +    E  L+++  M   G QL ++ Y  L+    
Sbjct: 681 LVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALC 740

Query: 387 DVGYTDEAFEIFEDMKSSE-NCQPDSWT 413
              + +EA  IF+ M     N    +WT
Sbjct: 741 KENFIEEAQCIFQTMLEKHWNSDEVAWT 768



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 1/217 (0%)

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           ++++++   G+   V++A  +Y +  N   R     F+T+I +    G       +   +
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
                 PN  TY +L+    R         ++  M  +G  PN  TY++L+         
Sbjct: 229 FRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRL 288

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           E+ + +  EM +KG++ +V  Y   L    D G + EA E+   MK    C P+  TF++
Sbjct: 289 EEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMK-KRGCVPNIQTFTA 347

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           +I+  S  GK   A  ++++ML  G  P      +LI
Sbjct: 348 LISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALI 384



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 98/229 (42%), Gaps = 36/229 (15%)

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           +F+TL+   G     D   ++Y +M   G++P+++T+N +++ + +  R  + K I   +
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
                 PN  TY SL+  + R                                       
Sbjct: 229 FRYDAYPNAFTYTSLILGHCRNHN-----------------------------------L 253

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           D AF +F+ M   + C P+S T+S++I      G++ EA  M  EM++ G EP ++  T 
Sbjct: 254 DLAFAMFDRM-VKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTI 312

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
            +     A  + + V  L ++ + G  P+ +    L++ +++  K E+ 
Sbjct: 313 PLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIA 361


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y + +  F K   + +A    D+M+  G +P  VT++TLI         + A E F
Sbjct: 523 DVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELF 582

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK--------WRIDPNA--- 272
           E M + GC P+ +TY+++ID Y ++GN+E A  +Y R R +         ++I  N    
Sbjct: 583 ELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEK 642

Query: 273 -----FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                +  L+     A       ++ E M   G +PN I Y+ L+D   +A +  + + +
Sbjct: 643 PNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEV 702

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           + +M ++G +PN  TY+SL+    + +  +  L V  +M E     ++ +Y  ++   + 
Sbjct: 703 FHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSK 762

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           V  TDEA+++   M   + C+P+  T+++MI      GKV +   +F EM   G  PN  
Sbjct: 763 VAKTDEAYKLML-MMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFV 821

Query: 448 VLTSLI 453
             T LI
Sbjct: 822 TYTVLI 827



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 104/460 (22%), Positives = 189/460 (41%), Gaps = 36/460 (7%)

Query: 142 MTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR----DLDKAERLFDDMLDRGVK 197
           +  P T  LA   +   L A    +L  V +  F +C       +KA ++  +M+  G  
Sbjct: 429 LPGPVTFELAEKAYNEMLSAG--TVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFV 486

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           PD  T+S +I      +    A   F+ M   G  PD  TY+ +ID + +AG ++ A   
Sbjct: 487 PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNW 546

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
            D    +        ++TLI  Y  A        ++E M A G  PN+ITY  L+D   +
Sbjct: 547 LDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCK 606

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
           +    +   IY  M  +   P+ + Y                  +   + EK    +V  
Sbjct: 607 SGNIEKACQIYARMRGDADIPDVDMY----------------FKIKNNVAEKP---NVVT 647

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           Y  L+          +A ++ E M   + C+P++  + ++I       K+ EA+ +F++M
Sbjct: 648 YGALVDGLCKAHKVKDARDLLETM-FVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKM 706

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK- 496
           +E G+ PN++  +SLI    K +R D V++ L+++ E    P+      +++ +++  K 
Sbjct: 707 VEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKT 766

Query: 497 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDL 556
           +E  KL+  +E+   K   V    + +   +     +  ELF  +          C  + 
Sbjct: 767 DEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSK------GCAPNF 820

Query: 557 CVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKS 596
                L+ + C    L    E Y  ++    T W  H+ S
Sbjct: 821 VTYTVLINHCCATGHLD---EAYALLEEMKQTYWPKHVSS 857



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 143/313 (45%), Gaps = 3/313 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y+  +  F K   LD+A+ +F  M++ G  P+  T+S+LI     +   +  ++   +
Sbjct: 681 IVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSK 740

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M    C P+ + Y+ MID   +    + A+ L      +  + +   ++ +I  +G AG 
Sbjct: 741 MLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGK 800

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D CL ++ EM + G  PN +TY  L++         +   + +EM       + ++Y  
Sbjct: 801 VDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCK 860

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS-S 404
           ++  Y R      +L +  E+++ G    + LY  L+      G  + A E+ +++ S S
Sbjct: 861 VIEGYKREFIL--SLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISAS 918

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            +       ++S+I   S   K+  A  +F +M+  G  P+L     L+    + +R ++
Sbjct: 919 MSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEE 978

Query: 465 VVRALNRLPELGI 477
            ++  + L ++ I
Sbjct: 979 ALQLSDSLCQMDI 991



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 112/248 (45%), Gaps = 9/248 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +++Y   +    K    D+A +L   M ++G KP+ VT++ +I         +K +E F 
Sbjct: 750 IVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFR 809

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M S GC P+ +TY+ +I+     G+++ A+ L +  +   W    +++  +I+  G   
Sbjct: 810 EMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIE--GYKR 867

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS--PNWNT 342
            F   L + EE++  G  P ++ Y  L+D   +A R      ++KE+    +S     N 
Sbjct: 868 EFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNL 927

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y SL+ ++  A        ++ +M   G+   +  +  LL     V   +EA ++     
Sbjct: 928 YTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQL----- 982

Query: 403 SSENCQPD 410
           S   CQ D
Sbjct: 983 SDSLCQMD 990



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 111/533 (20%), Positives = 203/533 (38%), Gaps = 109/533 (20%)

Query: 53  SSNPTK-HSQNPQYPHGKTGSSPKSYIWVNPKSPRASKL-KEKSYDTRYNSLVK---LAA 107
           SSNP   +S +  + H  T S       V+P    +S   + + +  +  SL++   L +
Sbjct: 28  SSNPFPIYSHSSPFAHFSTSSPDDLPGLVDPDQSLSSDTSRVQCFSPQEVSLLRDSLLDS 87

Query: 108 DLDSCSA--------TEDDVFSVL---RCLGDDFLEQDCVII--LNNMTNPDTAALALTY 154
             DSCS+          ++ F +L   R   D F E+  +++       NPD     L++
Sbjct: 88  HADSCSSHRTLQTVKISNEAFLILDAVRNCDDGFGEKTHIVLRQFRQKLNPDLVVEILSF 147

Query: 155 FTNK-------LKASKEVILYNVTMKVFRKCRDL---DKAERLFDDMLDRGVKPDNVTFS 204
             +        L A ++ I Y+ T  V+    D+      +R+ ++ L      D     
Sbjct: 148 LKSPELCVKFFLWAGRQ-IGYDHTPAVYIALLDVFERGSYDRVPEEFLREIRGDDKEVLG 206

Query: 205 TLIS-----CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV-------- 251
            L++     C R N L N A+E   R+  FG  P  +TY++++  + RA  +        
Sbjct: 207 KLLNVLIRKCCR-NGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHR 265

Query: 252 ----------EMAFGLYDRA--RNEKWR----------IDPNA--FSTLIKLYGTAGNFD 287
                     E   G + +A  +  KWR            PN   ++ +I     A  F+
Sbjct: 266 EMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFE 325

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             ++    M++    PN+ TY  LL      K+  + K I   M   G  P++  + SL+
Sbjct: 326 EAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLV 385

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCA-------------------- 386
            AY ++        + ++M++   +    +YN L+ ++C+                    
Sbjct: 386 HAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEM 445

Query: 387 --------------------DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
                                 G  ++A+++  +M  +    PD+ T+S +I       +
Sbjct: 446 LSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGN-GFVPDTSTYSEVIGFLCNASR 504

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           V  A  +F EM   G  P+++  T LI C+ KA         L+ +   G  P
Sbjct: 505 VENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEP 557


>gi|125525011|gb|EAY73125.1| hypothetical protein OsI_00999 [Oryza sativa Indica Group]
          Length = 634

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 155/327 (47%), Gaps = 16/327 (4%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ Y   +      R  D    L  ++ D G++PD++ F+ LI+         +A   F 
Sbjct: 114 LVTYTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNALINALVEARRMGEATNTFL 173

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD----RARNEKWRIDPN--AFSTLIK 278
           RM   GC P A T++++I  YG AG  E +  ++D         +  + PN   ++ L+K
Sbjct: 174 RMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAGGEAAVRPNLTTYNILVK 233

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLS 337
            +  AG  +    V   M+A G  P+++TYN L     +    W+ + +  EM    GL 
Sbjct: 234 AWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMAQQAGLR 293

Query: 338 PNWNTYASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM---CADVGYTDE 393
            +  T+  ++  Y R  R GE  L   R+MK+ G+  +V ++NTLL       D+   D+
Sbjct: 294 TSERTWGIIVGGYCREGRLGE-ALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAVDD 352

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
              + E        +PD  T+S  +   S  G +++   +F++M+EAG EP+  V + L 
Sbjct: 353 VLGLMEQF----GIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILA 408

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPD 480
           + Y +AQ+ +     L ++  LG+ P+
Sbjct: 409 KGYVRAQQPEKAEELLRQMGRLGVRPN 435



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 129/278 (46%), Gaps = 2/278 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ +K +     L++A R+   M   G  PD VT++TL S    N+   +A E    M 
Sbjct: 228 YNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMA 287

Query: 228 S-FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G      T+  ++  Y R G +  A     + ++     +   F+TL+K +  A + 
Sbjct: 288 QQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDM 347

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
               +V   M+  G+KP+++TY++ L+ +       +   ++ +M + G+ P+   Y+ L
Sbjct: 348 AAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSIL 407

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
            + Y RA+  E    + R+M   G++ +V  + T+++    V     A  ++  M+ +  
Sbjct: 408 AKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGWCSVADMGNAVRVYAAMRDA-G 466

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
            +P+  TF ++I   S   +  +AE +   M +AG  P
Sbjct: 467 VRPNLRTFETLIWGYSELKQPWKAEEVLQMMQDAGVRP 504



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 111/255 (43%), Gaps = 4/255 (1%)

Query: 99  YNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNK 158
           YN+L    A  D     E+ V  + +  G    E+   II+           AL     +
Sbjct: 263 YNTLASAYAKNDETWRAEELVVEMAQQAGLRTSERTWGIIVGGYCREGRLGEALR-CVRQ 321

Query: 159 LKAS---KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
           +K S     VI++N  +K F    D+   + +   M   G+KPD VT+S  ++       
Sbjct: 322 MKDSGVLPNVIVFNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGH 381

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
             K ++ F++M   G +PD   YS +   Y RA   E A  L  +      R +   F+T
Sbjct: 382 MAKCMKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTT 441

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           +I  + +  +    + VY  M+  GV+PN+ T+  L+      K+PW+ + + + M D G
Sbjct: 442 VISGWCSVADMGNAVRVYAAMRDAGVRPNLRTFETLIWGYSELKQPWKAEEVLQMMQDAG 501

Query: 336 LSPNWNTYASLLRAY 350
           + P   TY  +  A+
Sbjct: 502 VRPKQTTYCLVADAW 516



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 14/225 (6%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           CR+  L +A R    M D GV P+ + F+TL+      N      +    M  FG  PD 
Sbjct: 307 CREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDI 366

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           +TYS  ++A    G++     ++D+        DP  +S L K Y  A   +    +  +
Sbjct: 367 VTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQ 426

Query: 296 MKAIGVKPNMITYNNLLDT------MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           M  +GV+PN++T+  ++        MG A R      +Y  M D G+ PN  T+ +L+  
Sbjct: 427 MGRLGVRPNVVTFTTVISGWCSVADMGNAVR------VYAAMRDAGVRPNLRTFETLIWG 480

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           Y   +       V + M++ G++   T Y  +      VG  + A
Sbjct: 481 YSELKQPWKAEEVLQMMQDAGVRPKQTTYCLVADAWKAVGLVENA 525



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 123/299 (41%), Gaps = 13/299 (4%)

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
           P++A   F  +   G  P  +TY++++ A       +    L     +   R D   F+ 
Sbjct: 95  PHQAHSAFRHLVDDGHRPSLVTYTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNA 154

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LI     A       N +  M   G +P   T+N L+   G A RP + + ++  M   G
Sbjct: 155 LINALVEARRMGEATNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGG 214

Query: 336 ------LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
                 + PN  TY  L++A+  A   E+   V   M+  G    V  YNTL +  A   
Sbjct: 215 AGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKND 274

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFV 448
            T  A E+  +M      +    T+  +I    CR G++ EA     +M ++G  PN+ V
Sbjct: 275 ETWRAEELVVEMAQQAGLRTSERTW-GIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIV 333

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
             +L++ +  A     V   L  + + GI PD       LN ++      +G + +C++
Sbjct: 334 FNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALS-----SMGHMAKCMK 387



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 7/182 (3%)

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           +I     +  M  A+RP Q  + ++ + D+G  P+  TY +LL A    R  +    +  
Sbjct: 79  VIARTRQMRAMIDARRPHQAHSAFRHLVDDGHRPSLVTYTTLLAALTSQRAFDTIPWLLA 138

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           E+++ G++     +N L+    +     EA   F  M  S  C+P + TF+++I      
Sbjct: 139 EVEDAGLRPDSIFFNALINALVEARRMGEATNTFLRMGHS-GCRPTASTFNTLIKGYGIA 197

Query: 425 GKVSEAEAMFNEM------LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
           G+  E++ +F+ M       EA   PNL     L++ +  A R ++  R + R+   G  
Sbjct: 198 GRPEESQRVFDMMASGGAGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGAD 257

Query: 479 PD 480
           PD
Sbjct: 258 PD 259


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 143/302 (47%), Gaps = 2/302 (0%)

Query: 158 KLKASKEVILYNVTMKVFRKC-RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
           ++  S  ++ YNV + VF K  R   K   + D+M  +G+K D  T ST++S      L 
Sbjct: 238 EMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLL 297

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
            +A E+F  + S G +P  +TY++++  +G+AG    A  +           D   ++ L
Sbjct: 298 REAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNEL 357

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           +  Y  AG       V E M   GV PN ITY  ++D  G+A +  +   ++  M + G 
Sbjct: 358 VAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGC 417

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            PN  TY ++L   G+     + + +  +MK  G   +   +NT+LA+C + G       
Sbjct: 418 VPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNR 477

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           +F +MKS    +PD  TF+++I+     G   +A  M+ EM  AGF   +    +L+   
Sbjct: 478 VFREMKSC-GFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNAL 536

Query: 457 GK 458
            +
Sbjct: 537 AR 538



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 165/359 (45%), Gaps = 16/359 (4%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           KL   KEV+L N  ++     + L    R FD +    ++ D V+   L+     +    
Sbjct: 102 KLLCKKEVVLVNSIVE-----QPLTGLSRFFDSVKSELLRTDLVS---LVKGLDDSGHWE 153

Query: 218 KAVEWFERMP----SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           +AV  FE +     S     D       +   GR     +A  L D+   +++ +D  A+
Sbjct: 154 RAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAY 213

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMT 332
           +T++  Y   G ++  ++++E MK +G  P ++TYN +LD  G+  R W ++  +  EM 
Sbjct: 214 TTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMR 273

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             GL  +  T +++L A  R     +    + E+K  G +     YN LL +    G   
Sbjct: 274 SKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYT 333

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           EA  + ++M+ + +C  DS T++ ++      G   EA  +   M + G  PN    T++
Sbjct: 334 EALSVLKEMEEN-SCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTV 392

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE-ELGKLVECVEKSN 510
           I  YGKA + D+ ++    + E G  P+      +L+++ +  +  E+ K++ C  KSN
Sbjct: 393 IDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKML-CDMKSN 450



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 147/316 (46%), Gaps = 18/316 (5%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I Y   +  + K    D+A +LF  M + G  P+  T++ ++S     +  N+ ++    
Sbjct: 387 ITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCD 446

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S GC P+  T+++M+   G  G  +    ++   ++  +  D + F+TLI  YG  G+
Sbjct: 447 MKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGS 506

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV-KTIYKEMTDNGLSPNWNTYA 344
                 +Y EM   G    + TYN LL+ + R K  W+  + +  +M   G  P   +Y+
Sbjct: 507 EVDASKMYGEMTRAGFNACVTTYNALLNALAR-KGDWRSGENVISDMKSKGFKPTETSYS 565

Query: 345 SLLRAYGRARYGEDTLSVYR---EMKEKGMQLSVTLYNTLLAM---CADVGYTDEAFEIF 398
            +L+ Y +   G + L + R    +KE  +  S  L  TLL     C  +  ++ AF +F
Sbjct: 566 LMLQCYAK---GGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLF 622

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY-- 456
           +        +PD   F+SM++I +      +AE +   + E G  P+L    SL+  Y  
Sbjct: 623 K----KHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVR 678

Query: 457 -GKAQRTDDVVRALNR 471
            G+  + +++++ L +
Sbjct: 679 RGECWKAEEILKTLEK 694



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 149/331 (45%), Gaps = 1/331 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L Y   +         YN  + +  K    ++  ++  DM   G  P+  T++T+++
Sbjct: 405 ALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLA 464

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 +       F  M S G +PD  T++++I AYGR G+   A  +Y       +  
Sbjct: 465 LCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNA 524

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
               ++ L+      G++    NV  +MK+ G KP   +Y+ +L    +      ++ I 
Sbjct: 525 CVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIE 584

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             + +  + P+W    +LL A  + R    +   +   K+ G +  + ++N++L++    
Sbjct: 585 NRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRN 644

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
              D+A  I E ++  +   PD  T++S++ +   RG+  +AE +   + ++  +P+L  
Sbjct: 645 NMYDQAEGILESIR-EDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVS 703

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             ++I+ + +     + VR L+ + E GI P
Sbjct: 704 YNTVIKGFCRRGLMQEAVRMLSEMTERGIRP 734



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 146/323 (45%), Gaps = 17/323 (5%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  +  + +     +A  + + M  +GV P+ +T++T+I         ++A++ F  
Sbjct: 352 VTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYS 411

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPN--AFSTLIKLYGT 282
           M   GC P+  TY++++   G+     EM   L D   N      PN   ++T++ L G 
Sbjct: 412 MKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNG---CSPNRATWNTMLALCGN 468

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G       V+ EMK+ G +P+  T+N L+   GR         +Y EMT  G +    T
Sbjct: 469 KGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTT 528

Query: 343 YASLLRAYGRA---RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
           Y +LL A  R    R GE+ +S   +MK KG + + T Y +L+  C   G      E  E
Sbjct: 529 YNALLNALARKGDWRSGENVIS---DMKSKGFKPTETSY-SLMLQCYAKGGNYLGIERIE 584

Query: 400 DMKSSENCQPDSWTFSSMITICS--CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           +        P SW     + + +  CR  ++ +E  F    + G++P++ +  S++  + 
Sbjct: 585 NRIKEGQIFP-SWMLLRTLLLANFKCRA-LAGSERAFTLFKKHGYKPDMVIFNSMLSIFT 642

Query: 458 KAQRTDDVVRALNRLPELGITPD 480
           +    D     L  + E G++PD
Sbjct: 643 RNNMYDQAEGILESIREDGLSPD 665



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 49/99 (49%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  +K F +   + +A R+  +M +RG++P   T++T +S      +  +  +  
Sbjct: 700 DLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVI 759

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           E M    C P+ LT+  ++D Y RAG    A     + +
Sbjct: 760 ECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIK 798


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 156/322 (48%), Gaps = 10/322 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I YN  +  F K  +++K + LFD+M   GV P+ VT +TL+         + AV +F
Sbjct: 418 DTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFF 477

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
                 G   DA+TY+++I+A+    N E A  L++         D   + TLI  +  A
Sbjct: 478 VEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQA 537

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       V  E+K +G++P+ + YN L+    R  +  +V  + KEM + GL P+  TY
Sbjct: 538 GRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITY 597

Query: 344 ASLLRAY----GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIF 398
            +L+ AY    G  ++ +    V R+M + G+  +V  Y  ++ A C + G  +EA EIF
Sbjct: 598 NTLI-AYASKNGDLKFAQ---KVMRKMIKAGVVPTVATYGAVINAYCLN-GNGNEAMEIF 652

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           +DMK++    P++  ++ +I       KV  A ++  +M   G  PN     ++ +    
Sbjct: 653 KDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRD 712

Query: 459 AQRTDDVVRALNRLPELGITPD 480
            +  + V   ++R+ E    PD
Sbjct: 713 EKDLEKVFEFMDRMIEHACNPD 734



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 141/303 (46%), Gaps = 14/303 (4%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDM--------LDRGVKPDNVTFSTLISCARMNNLP 216
           V+ + + +    K R +D A  + + M        +   V+PD V ++TLI         
Sbjct: 340 VVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQ 399

Query: 217 NKAVEWFERMPSF-GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS- 274
            + +   ERM S  GC PD +TY+ +ID + +AG +E    L+D    E   + PN  + 
Sbjct: 400 QEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEG--VAPNVVTV 457

Query: 275 -TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
            TL+      G     +N + E +  G+K + +TY  L++         +   ++ EM  
Sbjct: 458 NTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLK 517

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
           +G SP+   Y +L+  + +A    D   V  E+K+ G++     YNTL+           
Sbjct: 518 SGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHR 577

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
            FE+ ++M+ +   +PD+ T++++I   S  G +  A+ +  +M++AG  P +    ++I
Sbjct: 578 VFEMLKEMEEA-GLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVI 636

Query: 454 QCY 456
             Y
Sbjct: 637 NAY 639



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 143/319 (44%), Gaps = 10/319 (3%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP--------SFGC 231
           + ++   L + M++  ++P+ VTF  LI+        + A+E  E+M         S   
Sbjct: 320 NFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSV 379

Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW-RIDPNAFSTLIKLYGTAGNFDGCL 290
           +PD + Y+++ID   + G  +   GL +R R++K    D   ++ LI  +  AG  +   
Sbjct: 380 EPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGK 439

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            +++EM   GV PN++T N L+  M R  R       + E    G+  +  TY +L+ A+
Sbjct: 440 ELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAF 499

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
                 E  + ++ EM + G      +Y TL++  +  G   +A  +  ++K     +PD
Sbjct: 500 CNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKL-GIRPD 558

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
           +  ++++I       K      M  EM EAG +P+     +LI    K        + + 
Sbjct: 559 TVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMR 618

Query: 471 RLPELGITPDDRFCGCLLN 489
           ++ + G+ P     G ++N
Sbjct: 619 KMIKAGVVPTVATYGAVIN 637


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 156/333 (46%), Gaps = 3/333 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERM 226
           Y + +       D+ K E + D+M  + V  D   ++ +I+   R  N+  +A E F+  
Sbjct: 205 YTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNV-RRASEVFDEC 263

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G +P+  TY  +I+ + + G +E A  L    +      +   F+T+I  Y   G  
Sbjct: 264 VGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMV 323

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  L V   M+ +G++ ++ TYN L   + R  R  + KT+   M + G+ PN+ TY +L
Sbjct: 324 DNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTL 383

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  + +     +   ++REM  KG   SV  YN ++      G   EA E F      + 
Sbjct: 384 ISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREA-ERFRKEMEKKG 442

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             PD +T++S++      GKV  A  +F EM   G EPN+   T+LI    K  R+++  
Sbjct: 443 LVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAF 502

Query: 467 RALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 499
           +  + + + G+TPDD     L+  +    ++++
Sbjct: 503 QLYDDMLKAGLTPDDSLYSALVGSLHTDNRKDI 535



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 145/333 (43%), Gaps = 1/333 (0%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AA  LT        S   +  +V +  F K   +D A  L D+M   GV+ + + +++L+
Sbjct: 115 AAAILTRALGSCPGSVSPLAASVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLL 174

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
            C        +  E  E M + G +    TY+ ++D+   AG++     + D  + +   
Sbjct: 175 DCYVRRKDDARVQELLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVA 234

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   ++ +I  Y  AGN      V++E    G++PN  TY  L++   +  +    + +
Sbjct: 235 GDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEML 294

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
             +M   G+  N   + +++  Y R    ++ L V   M++ G++L V  YNTL      
Sbjct: 295 LADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCR 354

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           V    EA  +   M   +   P+  T++++I+I    G + EA  +F EM   G  P++ 
Sbjct: 355 VNRMAEAKTLLHIM-IEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVV 413

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               ++  Y K     +  R    + + G+ PD
Sbjct: 414 TYNVMMDGYIKKGSIREAERFRKEMEKKGLVPD 446



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 60/117 (51%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A   V+ YNV M  + K   + +AER   +M  +G+ PD  T+++L+    +N   + A+
Sbjct: 408 AMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVAL 467

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           + FE M   G +P+ + Y+++I    + G  E AF LYD         D + +S L+
Sbjct: 468 KLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALV 524



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 35/182 (19%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   + +  K  D+ +A RLF +M  +G  P  VT++ ++          +A  + + 
Sbjct: 378 VTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKE 437

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  PD  TY+S++  +   G V++A                               
Sbjct: 438 MEKKGLVPDVYTYASLVHGHCVNGKVDVA------------------------------- 466

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               L ++EEMK  G +PN++ Y  L+  + +  R  +   +Y +M   GL+P+ + Y++
Sbjct: 467 ----LKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSA 522

Query: 346 LL 347
           L+
Sbjct: 523 LV 524


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 156/329 (47%), Gaps = 3/329 (0%)

Query: 168 YNVTMKVFRKCRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           +  T  +   CR+  LD A  +FD M+  G  P++VT+STLI+         +A++  E 
Sbjct: 238 FTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEE 297

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G +P   TY+  + +   AG    A  L  + +      +   F+ LI      G 
Sbjct: 298 MVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGK 357

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F+  + +Y +M A G+ P  +TYN L++ +    R     TI+K M  +G  P+  TY  
Sbjct: 358 FEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNE 417

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +++ +      +  + ++ +M + G   +V  YNTL+      G  + A  + E MK + 
Sbjct: 418 IIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGN- 476

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +PD+WT++ +I+  S  GK+  A ++F  M+E G  PN    T++I  Y    + DD 
Sbjct: 477 GLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDA 536

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQT 494
           +    ++ E G  P  +    +++  ++T
Sbjct: 537 LALFWKMVESGNLPSSQTYNVMISGFSKT 565



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 148/302 (49%), Gaps = 5/302 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +D A  ++  ML+ G++P  +TF+T+I+         +A      +  +   P+A TY+S
Sbjct: 183 VDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTS 242

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKA 298
           +I  + R  N+++AF ++DR   +    DPN+  +STLI    + G  +  +++ EEM  
Sbjct: 243 LILGHCRNHNLDLAFAMFDRMVKDG--CDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQ 300

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
            G++P + TY   L ++  A    +   +  +M   G  PN  T+ +L+    R    E 
Sbjct: 301 KGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEI 360

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            + +Y +M   G+  +   YN L+      G  + AF IF+ M  S    P + T++ +I
Sbjct: 361 AIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWML-SHGSLPSTQTYNEII 419

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 G + +A  +F++ML+AG  PN+    +LI  Y K    ++ +R L  +   G+ 
Sbjct: 420 KCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLK 479

Query: 479 PD 480
           PD
Sbjct: 480 PD 481



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 146/314 (46%), Gaps = 11/314 (3%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
            + A  +F  ML  G  P   T++ +I C  +     KA+  F++M   G  P+ +TY++
Sbjct: 393 FETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNT 452

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I  Y + GN+  A  L +  +    + D   ++ LI  +   G  +   +++  M   G
Sbjct: 453 LIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHG 512

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           + PN +TY  ++D      +      ++ +M ++G  P+  TY  ++  + +     +  
Sbjct: 513 ISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAE 572

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
           +   +M ++G+  +V  Y + +      G T  AF+IF +M+   N  P+ +T+SS+I  
Sbjct: 573 NFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEME-KRNYFPNLYTYSSLIYG 631

Query: 421 CSCRGKVSEAEAMFN---EMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPE 474
               G+  +AE M+N    +   G EPN+   T+L++     G+    D +V ++ +   
Sbjct: 632 LCQEGRAEDAE-MYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQK--- 687

Query: 475 LGITPDDRFCGCLL 488
            G+ P +     LL
Sbjct: 688 KGLQPSEEIYRALL 701



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 161/380 (42%), Gaps = 8/380 (2%)

Query: 151 ALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+  F   LKA  S  VI YN  +  + K  +L+ A RL + M   G+KPD  T++ LIS
Sbjct: 431 AMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELIS 490

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                     A   F  M   G  P+ +TY+++ID Y     V+ A  L+ +        
Sbjct: 491 GFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLP 550

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
               ++ +I  +    +     N   +M   G+ PN+ITY + +D + R  R      I+
Sbjct: 551 SSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIF 610

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDT--LSVYREMKEKGMQLSVTLYNTLLAMCA 386
            EM      PN  TY+SL+    +    ED    ++   +   G + +V  Y TL+    
Sbjct: 611 HEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLC 670

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPN 445
             G   EA ++   M+  +  QP    + +++ I  C+  KV  A  +F  M   GF+ +
Sbjct: 671 GEGRCYEADQLVVSMQ-KKGLQPSEEIYRALL-IGECKNLKVESALNIFYSMDTLGFQLH 728

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVE 504
           L    +LI    K    ++       + E     D+     LL+ + +  + +L  KL+ 
Sbjct: 729 LSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLLH 788

Query: 505 CVEKSNSKLGYVVKLLLEEQ 524
            +E  N  L +   ++L  +
Sbjct: 789 VMESRNCTLNFQTYVMLARE 808



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 109/255 (42%), Gaps = 2/255 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A +L Y   +   S   + Y   +  +     +D A  LF  M++ G  P + T++ +IS
Sbjct: 501 ATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMIS 560

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                N  ++A  +  +M   G  P+ +TY+S ID   R G   +AF ++       +  
Sbjct: 561 GFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFP 620

Query: 269 DPNAFSTLIKLYGTAGNFDGC--LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           +   +S+LI      G  +     N+   +   G +PN+ TY  L+  +    R ++   
Sbjct: 621 NLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQ 680

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +   M   GL P+   Y +LL    +    E  L+++  M   G QL ++ Y  L+    
Sbjct: 681 LVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALC 740

Query: 387 DVGYTDEAFEIFEDM 401
              + +EA  IF+ M
Sbjct: 741 KENFIEEAQCIFQTM 755



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 1/217 (0%)

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           ++++++   G+   V++A  +Y +  N   R     F+T+I +    G       +   +
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
                 PN  TY +L+    R         ++  M  +G  PN  TY++L+         
Sbjct: 229 FRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRL 288

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           E+ + +  EM +KG++ +V  Y   L    D G + EA E+   MK    C P+  TF++
Sbjct: 289 EEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMK-KRGCVPNIQTFTA 347

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           +I+  S  GK   A  ++++ML  G  P      +LI
Sbjct: 348 LISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALI 384



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 98/229 (42%), Gaps = 36/229 (15%)

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           +F+TL+   G     D   ++Y +M   G++P+++T+N +++ + +  R  + K I   +
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
                 PN  TY SL+  + R                                       
Sbjct: 229 FRYDAYPNAFTYTSLILGHCRNHN-----------------------------------L 253

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           D AF +F+ M   + C P+S T+S++I      G++ EA  M  EM++ G EP ++  T 
Sbjct: 254 DLAFAMFDRM-VKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTI 312

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
            +     A  + + V  L ++ + G  P+ +    L++ +++  K E+ 
Sbjct: 313 PLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIA 361


>gi|297827821|ref|XP_002881793.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
 gi|297327632|gb|EFH58052.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
          Length = 822

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 165/330 (50%), Gaps = 1/330 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   M ++    +++    +F+ ML  G+KP+ V+++ L+    ++ +   A+  F
Sbjct: 319 DVVTFTSIMHLYSVRGEIENCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGMSENALSVF 378

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             +   G  PD ++Y+S++++YGR+     A  ++   R E+ + +   ++ LI  YG+ 
Sbjct: 379 GDIKRNGIVPDVVSYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSN 438

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     + ++ +M+  G KPN+++   LL    R+K+   V+T+       G++ N   Y
Sbjct: 439 GFLAEAVEIFRQMEQDGTKPNVVSVCTLLAACSRSKKKVNVETVLSAAQSRGINLNTAAY 498

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S + +Y  A   E  +++Y+ M++K ++     +  L++    +    EA    ++M+ 
Sbjct: 499 NSAIGSYINAAELEKAIALYQTMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMED 558

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
             +       +SS++   S +G+V+EAE++FN+M  AG +P++   TS++  Y  +++  
Sbjct: 559 L-SIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCKPDVIAYTSMLHAYNASEKWG 617

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
                   +   GI PD   C  L+    +
Sbjct: 618 KACELFLEMEANGIEPDSIACSALMRAFNK 647



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 152/315 (48%), Gaps = 8/315 (2%)

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEE 295
           Y+ MI  + R   V+ A GL+     +KW   P+A  +  LI  +G AG +   +N+ ++
Sbjct: 146 YNMMIRLHARHNWVDQARGLFFEM--QKWSCKPDAETYDALINAHGRAGQWRWAMNLMDD 203

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M    + P+  TYNNL++  G +    Q   + K+MTDNG+ P+  T+  +L AY   R 
Sbjct: 204 MLRAAIAPSRSTYNNLINACGSSGNWRQALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQ 263

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTF 414
               LS +  MK   ++   T +N ++   + +G + +A ++F  M+     C+PD  TF
Sbjct: 264 YSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDVVTF 323

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +S++ + S RG++    A+F  ML  G +PN+    +L+  Y     +++ +     +  
Sbjct: 324 TSIMHLYSVRGEIENCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGMSENALSVFGDIKR 383

Query: 475 LGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKK 532
            GI PD      LLN   ++ +    K V  + +   +   VV    L++     G F  
Sbjct: 384 NGIVPDVVSYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNG-FLA 442

Query: 533 EATELFNSISKDVKK 547
           EA E+F  + +D  K
Sbjct: 443 EAVEIFRQMEQDGTK 457



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 136/320 (42%), Gaps = 38/320 (11%)

Query: 184 AERLFDDMLD-----------------------------------RGVKPDNVTFSTLIS 208
           A  L DDML                                     GV PD VT + ++S
Sbjct: 197 AMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRQALEVCKKMTDNGVGPDLVTHNIVLS 256

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
             +     +KA+ +FE M      PD  T++ +I    + G    A  +++  R+++   
Sbjct: 257 AYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDVFNSMRDKRAEC 316

Query: 269 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
            P+   F++++ LY   G  + C  V+E M A G+KPN+++YN L+             +
Sbjct: 317 RPDVVTFTSIMHLYSVRGEIENCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGMSENALS 376

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           ++ ++  NG+ P+  +Y SLL +YGR+R       V+  M+++  + +V  YN L+    
Sbjct: 377 VFGDIKRNGIVPDVVSYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYG 436

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G+  EA EIF  M+  +  +P+  +  +++  CS   K    E + +     G   N 
Sbjct: 437 SNGFLAEAVEIFRQME-QDGTKPNVVSVCTLLAACSRSKKKVNVETVLSAAQSRGINLNT 495

Query: 447 FVLTSLIQCYGKAQRTDDVV 466
               S I  Y  A   +  +
Sbjct: 496 AAYNSAIGSYINAAELEKAI 515



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/317 (20%), Positives = 131/317 (41%), Gaps = 38/317 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA-RMNNLPNKAVEWFERM 226
           YN  +  +    +L+KA  L+  M  + VK D+VTF+ LIS + RM+  P +A+ + + M
Sbjct: 498 YNSAIGSYINAAELEKAIALYQTMRKKKVKADSVTFTILISGSCRMSKYP-EAISYLKEM 556

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
                      YSS++ AY + G V  A  +++                           
Sbjct: 557 EDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFN--------------------------- 589

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                   +MK  G KP++I Y ++L     +++  +   ++ EM  NG+ P+    ++L
Sbjct: 590 --------QMKMAGCKPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSAL 641

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +RA+ +     +   +   M+EK +  +  ++  + + C  +     A ++ + M     
Sbjct: 642 MRAFNKGGQPSNVFVLMDLMREKEVPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLP 701

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
                 T + M+ +    GKV     +F +++ +G E N      L++           +
Sbjct: 702 SLSIGLT-NQMLYLFGKSGKVEAMMKLFYKIIASGVEINFKTYAILLEHLLAVGNWRKYI 760

Query: 467 RALNRLPELGITPDDRF 483
             L  + + GI P ++ 
Sbjct: 761 EVLEWMSDAGIQPSNQM 777



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 102/242 (42%), Gaps = 2/242 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWF 223
           V+ YN  +  +     L +A  +F  M   G KP+ V+  TL++ C+R     N      
Sbjct: 425 VVTYNALIDAYGSNGFLAEAVEIFRQMEQDGTKPNVVSVCTLLAACSRSKKKVNVETV-L 483

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
               S G + +   Y+S I +Y  A  +E A  LY   R +K + D   F+ LI      
Sbjct: 484 SAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQTMRKKKVKADSVTFTILISGSCRM 543

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
             +   ++  +EM+ + +      Y+++L    +  +  + ++I+ +M   G  P+   Y
Sbjct: 544 SKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCKPDVIAY 603

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S+L AY  +        ++ EM+  G++      + L+      G     F + + M+ 
Sbjct: 604 TSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMRE 663

Query: 404 SE 405
            E
Sbjct: 664 KE 665


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 166/325 (51%), Gaps = 8/325 (2%)

Query: 163 KEVILYNVT-----MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLP 216
           K V+ YNVT     ++ + +   +++AE+LFD+ML +G++PD   ++++I+   +  N+ 
Sbjct: 251 KNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNM- 309

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
            +A   F+ M      P+A TY ++I+   +AG ++ A  + +  +++   ++   F+TL
Sbjct: 310 KRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTL 369

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           +  Y   G  D  L +   M+  G + +  T N +     R+ R  + K +   M + G+
Sbjct: 370 MDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGV 429

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
           +PN  +++ L+  Y + +   +   +++ M++KG   SV  YN  +      G  +EA++
Sbjct: 430 APNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYK 489

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           +  +M+      PD++T++S+I      G V  A  +FNEM + G   N+   T +I   
Sbjct: 490 LINEMQ-ERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGL 548

Query: 457 GKAQRTDDVVRALNRLPELGITPDD 481
            K  R D+  +  + + + GI PDD
Sbjct: 549 SKDGRADEAFKLYDEMNKEGIVPDD 573



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 196/463 (42%), Gaps = 20/463 (4%)

Query: 129 DFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLF 188
           DFL Q      N    PD  A  L  F+   +A K   + NV   +          ER+ 
Sbjct: 52  DFLRQ------NPSRKPDLPA-HLILFSRLYRARKFAEMKNVLKFIVNDGNLWSNVERIV 104

Query: 189 DDMLDRGVKPDNV-TFSTLISCARMNN-LPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
             +     +P  V  F  ++    M+N + + ++E F+     G + D  +    + A  
Sbjct: 105 SSIGGEFNEPSIVEKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFLLALK 164

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           R+GN+E+      +  +    I   +++ ++      G       + +E+   G KP++I
Sbjct: 165 RSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVI 224

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TYN LL+     K    V  I   M  N +  N  TY  L+  Y R+   E+   ++ EM
Sbjct: 225 TYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEM 284

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
            +KG++  V +Y +++      G    AF +F++M +     P+++T+ ++I      G+
Sbjct: 285 LKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEM-TERRLVPNAYTYGALINGACKAGE 343

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
           +  AE M N+M   G + N  +  +L+  Y K    D+ +R  N + + G   D   C  
Sbjct: 344 MKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNI 403

Query: 487 LLNVMTQT-PKEELGKLVECVEKSNSKLGYV-VKLLLEEQDIEGDFKKEATELFNSISKD 544
           + +   ++  +EE  +L+  +E+       V   +L++    E +F  EA  LF  + K 
Sbjct: 404 IASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNF-AEARRLFKVMEKK 462

Query: 545 VKKAYC---NCLIDLCVNLNLLENACKLL----ELGLTLEVYT 580
            K       N  I+       +E A KL+    E GL  + YT
Sbjct: 463 GKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYT 505



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 35/221 (15%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+    F +    ++A+RL   M +RGV P+ V+FS LI          +A   F+ M  
Sbjct: 402 NIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEK 461

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  P  +TY++ I+ Y + G +E A+ L +  +      D   +++LI     +GN D 
Sbjct: 462 KGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDR 521

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L ++ EM  +G+  N++TY  ++                     +GLS +         
Sbjct: 522 ALELFNEMPQLGLNRNVVTYTVII---------------------SGLSKD--------- 551

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
             GRA   ++   +Y EM ++G+     +Y++L+A    VG
Sbjct: 552 --GRA---DEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVG 587



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 63/113 (55%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  ++ + K   +++A +L ++M +RG+ PD  T+++LI   R +   ++A+E F 
Sbjct: 468 VVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFN 527

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
            MP  G + + +TY+ +I    + G  + AF LYD    E    D   +S+LI
Sbjct: 528 EMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLI 580


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 144/302 (47%), Gaps = 1/302 (0%)

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           R+LD A  +FD M+  G  P++VT+STLI+        ++A++  E M   G +P   TY
Sbjct: 247 RNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTY 306

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           +  I A     + E A  L  R +    R +   ++ LI      G  +  + +Y +M  
Sbjct: 307 TLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLK 366

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
            G+ PN +TYN L++ +    R      I+  M  +G   N  TY  +++        E 
Sbjct: 367 EGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEK 426

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            + ++ +M + G   +V  YNTL+      G  + A  + + MK +  C+PD WT++ ++
Sbjct: 427 AMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKEN-GCEPDEWTYNELV 485

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
           +  S  GK+  A   F EM+E G  PN    T+LI  + K  + D  +  L R+ E+G  
Sbjct: 486 SGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCN 545

Query: 479 PD 480
           P+
Sbjct: 546 PN 547



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 140/321 (43%), Gaps = 36/321 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +K      D++KA  LF+ ML  G  P  VT++TLI+        N A    + M 
Sbjct: 411 YNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMK 470

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC+PD  TY+ ++  + + G +E A   +          +P +++ LI  +   G  D
Sbjct: 471 ENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVD 530

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L++ + M+ +G  PN+ +YN +++ + +  R  + + I  +M + GL PN        
Sbjct: 531 IALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPN-------- 582

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
                                      V  Y TL+      G T  AF+IF DM+  + C
Sbjct: 583 ---------------------------VITYTTLIDGLCRNGRTQFAFKIFHDMEKRK-C 614

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+ +T+SS+I      GK  EAE +  EM   G  P+    TSLI  +    R D    
Sbjct: 615 LPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFL 674

Query: 468 ALNRLPELGITPDDRFCGCLL 488
            L R+ ++G  P+ R    LL
Sbjct: 675 LLRRMVDMGCKPNYRTYSVLL 695



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 143/303 (47%), Gaps = 5/303 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           ++ A  L+  ML+ G++P  +TF+TLI+         +A     ++  +   PD  TY+S
Sbjct: 179 VEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTS 238

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKA 298
           +I  + R  N+++AFG++DR   E    DPN+  +STLI      G  D  L++ EEM  
Sbjct: 239 LILGHCRNRNLDLAFGVFDRMVKEGC--DPNSVTYSTLINGLCNEGRVDEALDMLEEMIE 296

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
            G++P + TY   +  +   +   +   +   M   G  PN  TY +L+    R    E 
Sbjct: 297 KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEV 356

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            + +Y +M ++G+  +   YN L+      G    A +IF  M+       ++ T++ +I
Sbjct: 357 AIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWME-GHGSLANTQTYNEII 415

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 G + +A  +F +ML+ G  P +    +LI  Y      ++  R L+ + E G  
Sbjct: 416 KGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCE 475

Query: 479 PDD 481
           PD+
Sbjct: 476 PDE 478



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 128/272 (47%), Gaps = 7/272 (2%)

Query: 151 ALTYFTNKLKASK--EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+  F   LK      V+ YN  +  +    +++ A RL D M + G +PD  T++ L+S
Sbjct: 427 AMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVS 486

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                     A  +F+ M   G +P+ ++Y+++ID + + G V++A  L  R   E+   
Sbjct: 487 GFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRM--EEMGC 544

Query: 269 DPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           +PN  +++ +I        F     + ++M   G+ PN+ITY  L+D + R  R      
Sbjct: 545 NPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFK 604

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           I+ +M      PN  TY+SL+    +    ++   + +EM+ KG+      + +L+    
Sbjct: 605 IFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFV 664

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            +G  D AF +   M     C+P+  T+S ++
Sbjct: 665 VLGRIDHAFLLLRRM-VDMGCKPNYRTYSVLL 695



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 119/277 (42%), Gaps = 8/277 (2%)

Query: 188 FDDMLDRGVK-----PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           F  ML+R V+     P +     +I   R      +  ++   +   G      + ++++
Sbjct: 111 FISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLL 170

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
               +   VE A  LY +  N   +     F+TLI +    G       +  ++    + 
Sbjct: 171 IQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLS 230

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P++ TY +L+    R +       ++  M   G  PN  TY++L+         ++ L +
Sbjct: 231 PDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDM 290

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
             EM EKG++ +V  Y   +     + + +EA E+   MK    C+P+  T++++I+  S
Sbjct: 291 LEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMK-KRGCRPNVQTYTALISGLS 349

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ--CYG 457
             GK+  A  ++++ML+ G  PN     +LI   C G
Sbjct: 350 RLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVG 386



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL+L     ++  +  V  YN  +    K     +AE++ D M+++G+ P+ +T++TLI 
Sbjct: 532 ALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLID 591

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               N     A + F  M    C P+  TYSS+I    + G  + A  L      +    
Sbjct: 592 GLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAP 651

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
           D   F++LI  +   G  D    +   M  +G KPN  TY+ LL  + +
Sbjct: 652 DEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQK 700



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +V     E++  G   +  +  +LL    +    E   ++Y++M   G+Q S+  +NTL+
Sbjct: 146 RVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLI 205

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAG 441
            + +  G   EA E+        +  PD +T++S+I +  CR + +  A  +F+ M++ G
Sbjct: 206 NILSKKGKVREA-ELILSQIFQYDLSPDVFTYTSLI-LGHCRNRNLDLAFGVFDRMVKEG 263

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
            +PN    ++LI       R D+ +  L  + E GI P
Sbjct: 264 CDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEP 301


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 157/332 (47%), Gaps = 7/332 (2%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
            S  V  YN+ ++ F    +L+     F +M   G  P+ VT++T+I          +A 
Sbjct: 199 VSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAF 258

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           +    M   G +P+ ++Y+ +I+   R G ++    + +     ++  D   F+TLI  Y
Sbjct: 259 KLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGY 318

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              GNF   L ++ EM   G+ PN++TY  L+++M +A    +      +M D GL PN 
Sbjct: 319 CNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNG 378

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY +L+  + +  + +    + +EM E G   ++  YN L+     +G  ++A  + ++
Sbjct: 379 RTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQE 438

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN---EMLEAGFEPNLFVLTSLIQCYG 457
           M       PD  ++S++I+   CR +  E E  F    EM+  G  P++   +SLIQ   
Sbjct: 439 M-IERGFIPDVVSYSTIIS-GFCRNQ--ELEKAFQLKVEMVAKGISPDVATYSSLIQGLC 494

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           K +R  +V      +  LG+ PD+     L+N
Sbjct: 495 KQRRLGEVCDLFQEMLSLGLPPDEVTYTSLIN 526



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 161/364 (44%), Gaps = 17/364 (4%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  V+ Y   +    K  +L++A    D M DRG+ P+  T++TLI          +A +
Sbjct: 340 SPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQ 399

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + M   G  P  +TY+++I+ +   G +E A GL        +  D  ++ST+I  + 
Sbjct: 400 IMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFC 459

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                +    +  EM A G+ P++ TY++L+  + + +R  +V  +++EM   GL P+  
Sbjct: 460 RNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEV 519

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY SL+ AY      +  L ++ EM +KG    +  YN L+        T EA  +   +
Sbjct: 520 TYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKL 579

Query: 402 KSSENCQPDSWTFSSMITICS---------------CRGKVSEAEAMFNEMLEAGFEPNL 446
              E+  P+  T++++I  C+                +G ++EA+ +   ML+ G++ N 
Sbjct: 580 LYEESV-PNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNE 638

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE-ELGKLVEC 505
            V   +I  + K    +        +   G  P       L   +    KE EL +L++ 
Sbjct: 639 EVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDY 698

Query: 506 VEKS 509
             KS
Sbjct: 699 TLKS 702



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 146/323 (45%), Gaps = 43/323 (13%)

Query: 197 KPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA-GNVEMA 254
           K  +  F  ++ SCAR+N L NKA+       S+G  P  L+Y++++DA  R   +V++A
Sbjct: 129 KSSSAVFDLVVKSCARVN-LINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIA 187

Query: 255 FGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            G++         + PN ++   LI+ + TAGN +  L  + EM+  G  PN++TYN ++
Sbjct: 188 EGIFKEMVESG--VSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTII 245

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY----------------ASLLRAYGRARYG 356
           D   + ++  +   + + M   GL+PN  +Y                + +L    + RY 
Sbjct: 246 DAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV 305

Query: 357 ED-------------------TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
            D                    L ++ EM + G+  +V  Y TL+      G  + A E 
Sbjct: 306 PDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF 365

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            + M+      P+  T++++I   S +G + +A  +  EM+E GF P +    +LI  + 
Sbjct: 366 LDQMR-DRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHC 424

Query: 458 KAQRTDDVVRALNRLPELGITPD 480
              R +D    L  + E G  PD
Sbjct: 425 ILGRMEDASGLLQEMIERGFIPD 447


>gi|115435438|ref|NP_001042477.1| Os01g0228400 [Oryza sativa Japonica Group]
 gi|17385740|dbj|BAB78680.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|113532008|dbj|BAF04391.1| Os01g0228400 [Oryza sativa Japonica Group]
 gi|215740499|dbj|BAG97155.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 636

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 155/327 (47%), Gaps = 16/327 (4%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ Y   +      R  D    L  ++ D G++PD++ F+ LI+         +A   F 
Sbjct: 114 LVTYTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNALINALVEARRMGEATNTFL 173

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD----RARNEKWRIDPN--AFSTLIK 278
           RM   GC P A T++++I  YG AG  E +  ++D         +  + PN   ++ L+K
Sbjct: 174 RMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAGGEAAVRPNLTTYNILVK 233

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLS 337
            +  AG  +    V   M+A G  P+++TYN L     +    W+ + +  EM    GL 
Sbjct: 234 AWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMAQQAGLR 293

Query: 338 PNWNTYASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM---CADVGYTDE 393
            +  T+  ++  Y R  R GE  L   R+MK+ G+  +V ++NTLL       D+   D+
Sbjct: 294 TSERTWGIIVGGYCREGRLGE-ALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAVDD 352

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
              + E        +PD  T+S  +   S  G +++   +F++M+EAG EP+  V + L 
Sbjct: 353 VLGLMEQF----GIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILA 408

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPD 480
           + Y +AQ+ +     L ++  LG+ P+
Sbjct: 409 KGYVRAQQPEKAEELLRQMGRLGVRPN 435



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 129/278 (46%), Gaps = 2/278 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ +K +     L++A R+   M   G  PD VT++TL S    N+   +A E    M 
Sbjct: 228 YNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMA 287

Query: 228 S-FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G      T+  ++  Y R G +  A     + ++     +   F+TL+K +  A + 
Sbjct: 288 QQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDM 347

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
               +V   M+  G+KP+++TY++ L+ +       +   ++ +M + G+ P+   Y+ L
Sbjct: 348 AAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSIL 407

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
            + Y RA+  E    + R+M   G++ +V  + T+++    V     A  ++  M+ +  
Sbjct: 408 AKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGWCSVADMGNAVRVYAAMRDA-G 466

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
            +P+  TF ++I   S   +  +AE +   M +AG  P
Sbjct: 467 VRPNLRTFETLIWGYSELKQPWKAEEVLQMMQDAGVRP 504



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 111/255 (43%), Gaps = 4/255 (1%)

Query: 99  YNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNK 158
           YN+L    A  D     E+ V  + +  G    E+   II+           AL     +
Sbjct: 263 YNTLASAYAKNDETWRAEELVVEMAQQAGLRTSERTWGIIVGGYCREGRLGEALR-CVRQ 321

Query: 159 LKAS---KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
           +K S     VI++N  +K F    D+   + +   M   G+KPD VT+S  ++       
Sbjct: 322 MKDSGVLPNVIVFNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGH 381

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
             K ++ F++M   G +PD   YS +   Y RA   E A  L  +      R +   F+T
Sbjct: 382 MAKCMKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTT 441

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           +I  + +  +    + VY  M+  GV+PN+ T+  L+      K+PW+ + + + M D G
Sbjct: 442 VISGWCSVADMGNAVRVYAAMRDAGVRPNLRTFETLIWGYSELKQPWKAEEVLQMMQDAG 501

Query: 336 LSPNWNTYASLLRAY 350
           + P   TY  +  A+
Sbjct: 502 VRPKQTTYCLVADAW 516



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 14/225 (6%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           CR+  L +A R    M D GV P+ + F+TL+      N      +    M  FG  PD 
Sbjct: 307 CREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDI 366

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           +TYS  ++A    G++     ++D+        DP  +S L K Y  A   +    +  +
Sbjct: 367 VTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQ 426

Query: 296 MKAIGVKPNMITYNNLLDT------MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           M  +GV+PN++T+  ++        MG A R      +Y  M D G+ PN  T+ +L+  
Sbjct: 427 MGRLGVRPNVVTFTTVISGWCSVADMGNAVR------VYAAMRDAGVRPNLRTFETLIWG 480

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           Y   +       V + M++ G++   T Y  +      VG  + A
Sbjct: 481 YSELKQPWKAEEVLQMMQDAGVRPKQTTYCLVADAWKAVGLVENA 525



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 123/299 (41%), Gaps = 13/299 (4%)

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
           P++A   F  +   G  P  +TY++++ A       +    L     +   R D   F+ 
Sbjct: 95  PHQAHSAFRHLVDDGHRPSLVTYTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNA 154

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LI     A       N +  M   G +P   T+N L+   G A RP + + ++  M   G
Sbjct: 155 LINALVEARRMGEATNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGG 214

Query: 336 ------LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
                 + PN  TY  L++A+  A   E+   V   M+  G    V  YNTL +  A   
Sbjct: 215 AGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKND 274

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFV 448
            T  A E+  +M      +    T+  +I    CR G++ EA     +M ++G  PN+ V
Sbjct: 275 ETWRAEELVVEMAQQAGLRTSERTW-GIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIV 333

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
             +L++ +  A     V   L  + + GI PD       LN ++      +G + +C++
Sbjct: 334 FNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALS-----SMGHMAKCMK 387



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 7/182 (3%)

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           +I     +  M  A+RP Q  + ++ + D+G  P+  TY +LL A    R  +    +  
Sbjct: 79  VIARTRQMRAMIDARRPHQAHSAFRHLVDDGHRPSLVTYTTLLAALTSQRAFDTIPWLLA 138

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           E+++ G++     +N L+    +     EA   F  M  S  C+P + TF+++I      
Sbjct: 139 EVEDAGLRPDSIFFNALINALVEARRMGEATNTFLRMGHS-GCRPTASTFNTLIKGYGIA 197

Query: 425 GKVSEAEAMFNEM------LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
           G+  E++ +F+ M       EA   PNL     L++ +  A R ++  R + R+   G  
Sbjct: 198 GRPEESQRVFDMMASGGAGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGAD 257

Query: 479 PD 480
           PD
Sbjct: 258 PD 259


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 163/352 (46%), Gaps = 37/352 (10%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y   +  F + + L++A +L ++M +RG  P+ VT++ L+      ++   A +  +
Sbjct: 57  VVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVK 116

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M   G  P+ +T++S++D + + GNV+ A  L      +  R +   +S LI     + 
Sbjct: 117 KMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQ 176

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            F     V EEMKA GV P+  TY+ L+  + +A +  + + + + M  +G +P+   Y+
Sbjct: 177 KFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYS 236

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           S++ A+ ++    +     +EM+++     V  YNT++     +G   EA  I + M+ S
Sbjct: 237 SIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQES 296

Query: 405 ENCQPDSWTFSSMIT------------------------------------ICSCRGKVS 428
            +  PD  T+S++I                                     +C C G++ 
Sbjct: 297 GDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKC-GRLE 355

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           EAE +   M  AG  PN+   T+LI    KA++ D+  R +  +   G  P+
Sbjct: 356 EAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPN 407



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 152/314 (48%), Gaps = 8/314 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEW 222
           V+ +N  +  F K  ++D A +L   M+ +G++P+ VT+S LI   C     L  K  E 
Sbjct: 127 VMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAK--EV 184

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            E M + G  PDA TYS++I    +A  +E A  +  R        D   +S++I  +  
Sbjct: 185 LEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCK 244

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWN 341
           +G         +EM+     P+++TYN ++D + +  +  + + I  +M ++G + P+  
Sbjct: 245 SGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVV 304

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++    ++    +   +   M + G    V  Y T++      G  +EA  + + M
Sbjct: 305 TYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGM 364

Query: 402 KSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           K +  C P+  T++++I+ +C  R KV EAE +  EM  AG  PNL    +++     + 
Sbjct: 365 KRA-GCAPNVVTYTTLISGLCKAR-KVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSG 422

Query: 461 RTDDVVRALNRLPE 474
           R  +  + + R+ +
Sbjct: 423 RIKEAQQLVQRMKD 436



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 163/352 (46%), Gaps = 50/352 (14%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           DL  A  L ++M   G  PD  T + +I+  A   +L        + + S GCDP+ +TY
Sbjct: 5   DLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDG----AMDHLRSMGCDPNVVTY 60

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNE-----------------------------KWRID 269
           +++I A+ RA  +E A  L +  R                               K  I+
Sbjct: 61  TALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIE 120

Query: 270 ----PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
               PN   F++L+  +   GN D    +   M A G++PN++TY+ L+D + ++++  +
Sbjct: 121 GGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLE 180

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
            K + +EM  +G++P+  TY++L+    +A   E+   + R M   G    V +Y++++ 
Sbjct: 181 AKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIH 240

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-F 442
                G   EA +  ++M+      PD  T++++I      GK++EA+ + ++M E+G  
Sbjct: 241 AFCKSGKLLEAQKTLQEMRKQRK-SPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDV 299

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCGC 486
            P++   +++I    K+    +  + L+R+ + G  PD        D  C C
Sbjct: 300 LPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKC 351



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 113/233 (48%), Gaps = 4/233 (1%)

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
           AG++  A  L +  ++  +  D    + +I     AG+ DG ++    ++++G  PN++T
Sbjct: 3   AGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMD---HLRSMGCDPNVVT 59

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           Y  L+    RAK+  +   + +EM + G  PN  TY  L+ A  +         V ++M 
Sbjct: 60  YTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMI 119

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
           E G   +V  +N+L+      G  D+A ++   M  ++  +P+  T+S++I       K 
Sbjct: 120 EGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM-VAKGMRPNVVTYSALIDGLCKSQKF 178

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            EA+ +  EM  +G  P+ F  ++LI    KA + ++  + L R+   G TPD
Sbjct: 179 LEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 231



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 118/276 (42%), Gaps = 37/276 (13%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEW 222
           +V++Y+  +  F K   L +A++   +M  +   PD VT++T+I    ++  +    V  
Sbjct: 231 DVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVIL 290

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            +   S    PD +TYS++I+   ++  +  A  L DR        D   ++T+I     
Sbjct: 291 DQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCK 350

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G  +    + + MK  G  PN++TY  L+  + +A++  + + + +EM + G  PN  T
Sbjct: 351 CGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVT 410

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +++                      G+ +S              G   EA ++ + MK
Sbjct: 411 YNTMV---------------------NGLCVS--------------GRIKEAQQLVQRMK 435

Query: 403 SSE-NCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
                C PD+ T+ +++        V EAE +  +M
Sbjct: 436 DGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 2/137 (1%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           ++N +   D    A        KA  + +V+ Y   +    KC  L++AE L   M   G
Sbjct: 309 VINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG 368

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
             P+ VT++TLIS        ++A    E M + GC P+ +TY++M++    +G ++ A 
Sbjct: 369 CAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQ 428

Query: 256 GLYDRARNEKWRIDPNA 272
            L  R ++ +    P+A
Sbjct: 429 QLVQRMKDGRAECSPDA 445


>gi|225454795|ref|XP_002274101.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27270-like [Vitis vinifera]
          Length = 1071

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 157/343 (45%), Gaps = 40/343 (11%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F +  D+ KA+ L D ++  G   ++ + ++LI+     +   KA+E F  +   GC   
Sbjct: 651 FTREGDISKAQNLNDQLVKLGRGAEDASIASLITLYGKQHKLKKAIEVFSAIE--GCTSG 708

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYD----------------------------------- 259
            L Y SMIDAY + G  E A+ LY+                                   
Sbjct: 709 KLIYISMIDAYAKCGKAEEAYHLYEEVTGKGIELGVVSISKVVHALANYGKHQEAENVIR 768

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
           R+  +   +D  A++T I     AG      ++Y+ M ++GV P++ TYN ++   GR +
Sbjct: 769 RSFEDGLELDTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQTYNTMISVYGRGR 828

Query: 320 RPWQVKTIYKEM--TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
           +  +   ++ +   +  G+S +  TY +L+  YG+A    +   ++REM+E+G++     
Sbjct: 829 KLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVS 888

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           YN ++ + A  G   EA E+F+ M   + C PDS T+ ++I   +   K  EAE     M
Sbjct: 889 YNIMINVYATAGLHHEAQELFQAM-LRDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSM 947

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              G  P+      L+  + KA  T++  R  + L   G++PD
Sbjct: 948 QNEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPD 990



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 147/298 (49%), Gaps = 4/298 (1%)

Query: 182  DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
             +AE +     + G++ D V ++T I+        + A   ++RM S G  P   TY++M
Sbjct: 761  QEAENVIRRSFEDGLELDTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQTYNTM 820

Query: 242  IDAYGRAGNVEMAFGLYDRAR--NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            I  YGR   ++ A  ++++AR       +D   ++ LI  YG AG       ++ EM+  
Sbjct: 821  ISVYGRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEE 880

Query: 300  GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
            G+KP  ++YN +++    A    + + +++ M  +G SP+  TY +L+RAY ++    + 
Sbjct: 881  GIKPGKVSYNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEA 940

Query: 360  LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
                  M+ +G+  S   +N LL+  A  G+T+EA  ++  + S+    PD   + +M+ 
Sbjct: 941  EETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSA-GLSPDVACYRTMLR 999

Query: 420  ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
                 G V +    F ++ E+  EP+ F+++S +  Y  A +  +    L+ +  LGI
Sbjct: 1000 GYLDYGCVEKGITFFEQIRES-VEPDRFIMSSAVHFYKLAGKELEAEGILDSMKSLGI 1056



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 131/289 (45%), Gaps = 6/289 (2%)

Query: 164  EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
            + + YN  +        L  A  ++D M+  GV P   T++T+IS        +KAVE F
Sbjct: 778  DTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQTYNTMISVYGRGRKLDKAVEMF 837

Query: 224  E--RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
               R    G   D  TY+++I  YG+AG    A  L+   + E  +    +++ +I +Y 
Sbjct: 838  NKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYA 897

Query: 282  TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            TAG       +++ M   G  P+ +TY  L+    ++ +  + +     M + G+ P+  
Sbjct: 898  TAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCV 957

Query: 342  TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
             +  LL A+ +A + E+   VY  +   G+   V  Y T+L    D G  ++    FE +
Sbjct: 958  HFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLDYGCVEKGITFFEQI 1017

Query: 402  KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG--FEPNLFV 448
            +  E+ +PD +  SS +      GK  EAE + + M   G  F  NL V
Sbjct: 1018 R--ESVEPDRFIMSSAVHFYKLAGKELEAEGILDSMKSLGIPFLKNLEV 1064



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 167/352 (47%), Gaps = 14/352 (3%)

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
           W +   S+   P  + Y+ ++  YG+ G +++A   +          D  A  T++  Y 
Sbjct: 181 WMKLQLSY--QPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAGCEPDEVACGTMLCTYA 238

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G     L+ Y  ++  G+ P++  +N +L ++ +     +V  +++EM D G+ PN  
Sbjct: 239 RWGRHKAMLSFYSAVQERGIIPSIAVFNFMLSSLQKKSLHGKVIDLWREMVDKGVVPNSF 298

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY  ++ +  +    E++   + EMK  G       Y+ L+++ +  G  DEA +++EDM
Sbjct: 299 TYTVVISSLVKDGLVEESFKTFYEMKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDM 358

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           +      P ++T +S++T+    G  S A ++F+EM +     +  +   LI+ YGK   
Sbjct: 359 R-YRRIVPSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGL 417

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN---SKLGYVV 517
            +D  +      +LG+  +++    +  V   +   E+   ++E +   N   S+  Y+V
Sbjct: 418 YEDAEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNFEKALTIMELMRSRNIWFSRFSYIV 477

Query: 518 KLLLEEQDIEGDF-KKEATELFNSISKD--VKKAYCNCLIDLCVNLNLLENA 566
             LL+   ++ D    EAT  F ++SK        CN +++L + L+LLE A
Sbjct: 478 --LLQCYVMKEDLASAEAT--FQALSKTGLPDAGSCNDMLNLYIKLDLLEKA 525



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/461 (20%), Positives = 192/461 (41%), Gaps = 61/461 (13%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNV---------------- 201
           +L     VI+Y + ++V+ +   +  AE+ F +ML+ G +PD V                
Sbjct: 185 QLSYQPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAGCEPDEVACGTMLCTYARWGRHK 244

Query: 202 -------------------TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
                               F+ ++S  +  +L  K ++ +  M   G  P++ TY+ +I
Sbjct: 245 AMLSFYSAVQERGIIPSIAVFNFMLSSLQKKSLHGKVIDLWREMVDKGVVPNSFTYTVVI 304

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            +  + G VE +F  +   +N  +  +   +S LI L    GN D  + +YE+M+   + 
Sbjct: 305 SSLVKDGLVEESFKTFYEMKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIV 364

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P+  T  +LL    +     +  +++ EM  N +  +   Y  L+R YG+    ED    
Sbjct: 365 PSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLYEDAEKT 424

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
           ++E ++ G+  +   Y  +  +  + G  ++A  I E M+ S N     +++  ++    
Sbjct: 425 FKETEQLGLLTNEKTYIAMAQVHLNSGNFEKALTIMELMR-SRNIWFSRFSYIVLLQCYV 483

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK---AQRTDDVVRALNRLPELGITP 479
            +  ++ AEA F  + + G  P+      ++  Y K    ++  D +  + + P   +  
Sbjct: 484 MKEDLASAEATFQALSKTGL-PDAGSCNDMLNLYIKLDLLEKAKDFIFQIRKDP---VEF 539

Query: 480 DDRFCGCLLNV-----MTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEA 534
           D   C  ++ V     M +  K+ + ++       +S+    + L++ E+    D+  + 
Sbjct: 540 DMELCKTVMKVYCKKGMLRDAKQLIQEMGTNGLFKDSEFIQTLSLVMHEESERPDYVDDT 599

Query: 535 TELFNSISKDVKKAYCNCLIDLCVNLNL---LENACKLLEL 572
            E  N           N  + L + L L   + NACK+ E+
Sbjct: 600 VEALNQ----------NNTLALELMLGLYSEVGNACKVEEI 630



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/315 (19%), Positives = 135/315 (42%), Gaps = 20/315 (6%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           E + Y++ + +  K  + D+A +L++DM  R + P N T ++L++    N   ++AV  F
Sbjct: 331 EEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNGDYSRAVSLF 390

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M       D + Y  +I  YG+ G  E A   +          +   +  + +++  +
Sbjct: 391 SEMEKNKIVADEVIYGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIAMAQVHLNS 450

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           GNF+  L + E M++  +  +  +Y  LL      +     +  ++ ++  GL P+  + 
Sbjct: 451 GNFEKALTIMELMRSRNIWFSRFSYIVLLQCYVMKEDLASAEATFQALSKTGL-PDAGSC 509

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-- 401
             +L  Y +    E       ++++  ++  + L  T++ +    G   +A ++ ++M  
Sbjct: 510 NDMLNLYIKLDLLEKAKDFIFQIRKDPVEFDMELCKTVMKVYCKKGMLRDAKQLIQEMGT 569

Query: 402 ----KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY- 456
               K SE  Q          T+     + SE     ++ +EA  + N   L  ++  Y 
Sbjct: 570 NGLFKDSEFIQ----------TLSLVMHEESERPDYVDDTVEALNQNNTLALELMLGLYS 619

Query: 457 --GKAQRTDDVVRAL 469
             G A + +++++ L
Sbjct: 620 EVGNACKVEEILKML 634



 Score = 42.7 bits (99), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 43/87 (49%)

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           +A + F  MK   + QP    ++ ++ +    GK+  AE  F EMLEAG EP+     ++
Sbjct: 174 QARDFFGWMKLQLSYQPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAGCEPDEVACGTM 233

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITP 479
           +  Y +  R   ++   + + E GI P
Sbjct: 234 LCTYARWGRHKAMLSFYSAVQERGIIP 260


>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
 gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
          Length = 597

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 147/304 (48%), Gaps = 1/304 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I YN+ +  + + R L +AE  +  +L+    P   T++ L+     +   ++A    
Sbjct: 171 DIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAEGVI 230

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  P A  Y++ +D   +A   E A  +Y R + E+ R +   ++ +I +YG A
Sbjct: 231 SEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKA 290

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                 L V+ EMK++G KPN+ TY  L++   R     + + +++EM   G  P+   Y
Sbjct: 291 NQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAY 350

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ AY RA   +    ++  M+  G +     YN L+      G   EA   F+++K 
Sbjct: 351 NALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELK- 409

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +  +P   +   +++  +  G V+  E +  ++ ++G  P+ F L +++  YG+A R D
Sbjct: 410 QQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLD 469

Query: 464 DVVR 467
           D+ R
Sbjct: 470 DMER 473



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 154/351 (43%), Gaps = 4/351 (1%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +YN  +    K R  +KA  ++  M     + +  T++ +I+     N P  ++  F  M
Sbjct: 244 VYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKANQPMSSLRVFREM 303

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            S GC P+  TY+++++A+ R G  E A  +++  +      D  A++ L++ Y  AG  
Sbjct: 304 KSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLP 363

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
            G   ++  M+ +G +P+  +YN L+D  GRA    + +  ++E+   G+ P   ++  L
Sbjct: 364 QGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLL 423

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L A+ R+        V  ++ + G++      N +L      G  D+   +F  M+  + 
Sbjct: 424 LSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDG 483

Query: 407 C---QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                PD+ T++ M+      G +   EA F  +   G   ++   TS I  Y + +   
Sbjct: 484 AIAGAPDTSTYNVMVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYG 543

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 513
             +R    + + G  PD      LL   +   + E++  +V  + K    L
Sbjct: 544 QCLRVFEEMVDAGCYPDAGTAKVLLAACSDERQVEQVKAIVRSMHKDAKTL 594



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 132/277 (47%), Gaps = 5/277 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +  Y   +  F +    +KAE +F++M   G +PD   ++ L+       LP  A E F 
Sbjct: 312 ICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFS 371

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   GC+PD  +Y+ ++DA+GRAG  + A   +   + +  R    +   L+  +  +G
Sbjct: 372 LMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSG 431

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT--DNGL--SPNW 340
           N   C  V  ++   G++P+    N +L+  GRA R   ++ ++  M   D  +  +P+ 
Sbjct: 432 NVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDT 491

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
           +TY  ++ AYGRA Y +   + +R +  +G+   V  + + +   A      +   +FE+
Sbjct: 492 STYNVMVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEE 551

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           M  +  C PD+ T   ++  CS   +V + +A+   M
Sbjct: 552 MVDA-GCYPDAGTAKVLLAACSDERQVEQVKAIVRSM 587



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 170/388 (43%), Gaps = 29/388 (7%)

Query: 112 CSATEDDVFSVLRCL-GDDFLEQDCVIILNNMTN--PDTAALALTYFTNKLKA--SKEVI 166
           C  TED    +LR   G   L +   +I     N  P TA +   Y    LKA  S++ +
Sbjct: 203 CVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAV 262

Query: 167 ----------------LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA 210
                            Y + + V+ K      + R+F +M   G KP+  T++ L++  
Sbjct: 263 EVYQRMKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAF 322

Query: 211 RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP 270
               L  KA E FE M   G +PD   Y+++++AY RAG  + A  ++    +     D 
Sbjct: 323 AREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDR 382

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
            +++ L+  +G AG        ++E+K  G++P M ++  LL    R+    + + +  +
Sbjct: 383 ASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQ 442

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS----VTLYNTLLAMCA 386
           +  +GL P+     ++L AYGRA   +D   ++  M+     ++     + YN ++    
Sbjct: 443 LHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYG 502

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             GY D     F  + ++     D  T++S I   + + +  +   +F EM++AG  P+ 
Sbjct: 503 RAGYLDRMEAAFRSL-AARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDA 561

Query: 447 FVLTSLIQCYGKAQRTDDV---VRALNR 471
                L+      ++ + V   VR++++
Sbjct: 562 GTAKVLLAACSDERQVEQVKAIVRSMHK 589



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 151/370 (40%), Gaps = 50/370 (13%)

Query: 181 LDKAERLFDDMLDRGVKPD-NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           + +A  L+DD+++  V+   N  +  +I+            EW  R  SF   PD + Y+
Sbjct: 129 IPQAHDLWDDIVNVAVQLRLNRQWEPIIT----------VCEWVLRRSSF--RPDIICYN 176

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +IDAYG+   +  A   Y      +     + ++ L++ Y  +G       V  EM+  
Sbjct: 177 LLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRN 236

Query: 300 GVKPNMITYNNLLDTM-----------------------------------GRAKRPWQV 324
           G+ P    YN  LD +                                   G+A +P   
Sbjct: 237 GIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKANQPMSS 296

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
             +++EM   G  PN  TY +L+ A+ R    E    V+ EM++ G +  V  YN L+  
Sbjct: 297 LRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEA 356

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
            +  G    A EIF  M+    C+PD  +++ ++      G   EAEA F E+ + G  P
Sbjct: 357 YSRAGLPQGASEIFSLMEHM-GCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRP 415

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLV 503
            +     L+  + ++         + +L + G+ PD      +LN   +  + +++ +L 
Sbjct: 416 TMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLF 475

Query: 504 ECVEKSNSKL 513
             +E+ +  +
Sbjct: 476 AAMERGDGAI 485


>gi|297737325|emb|CBI26526.3| unnamed protein product [Vitis vinifera]
          Length = 1005

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 157/343 (45%), Gaps = 40/343 (11%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F +  D+ KA+ L D ++  G   ++ + ++LI+     +   KA+E F  +   GC   
Sbjct: 585 FTREGDISKAQNLNDQLVKLGRGAEDASIASLITLYGKQHKLKKAIEVFSAIE--GCTSG 642

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYD----------------------------------- 259
            L Y SMIDAY + G  E A+ LY+                                   
Sbjct: 643 KLIYISMIDAYAKCGKAEEAYHLYEEVTGKGIELGVVSISKVVHALANYGKHQEAENVIR 702

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
           R+  +   +D  A++T I     AG      ++Y+ M ++GV P++ TYN ++   GR +
Sbjct: 703 RSFEDGLELDTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQTYNTMISVYGRGR 762

Query: 320 RPWQVKTIYKEM--TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
           +  +   ++ +   +  G+S +  TY +L+  YG+A    +   ++REM+E+G++     
Sbjct: 763 KLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVS 822

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           YN ++ + A  G   EA E+F+ M   + C PDS T+ ++I   +   K  EAE     M
Sbjct: 823 YNIMINVYATAGLHHEAQELFQAM-LRDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSM 881

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              G  P+      L+  + KA  T++  R  + L   G++PD
Sbjct: 882 QNEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPD 924



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 147/298 (49%), Gaps = 4/298 (1%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
            +AE +     + G++ D V ++T I+        + A   ++RM S G  P   TY++M
Sbjct: 695 QEAENVIRRSFEDGLELDTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQTYNTM 754

Query: 242 IDAYGRAGNVEMAFGLYDRAR--NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           I  YGR   ++ A  ++++AR       +D   ++ LI  YG AG       ++ EM+  
Sbjct: 755 ISVYGRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEE 814

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G+KP  ++YN +++    A    + + +++ M  +G SP+  TY +L+RAY ++    + 
Sbjct: 815 GIKPGKVSYNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEA 874

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
                 M+ +G+  S   +N LL+  A  G+T+EA  ++  + S+    PD   + +M+ 
Sbjct: 875 EETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSA-GLSPDVACYRTMLR 933

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
                G V +    F ++ E+  EP+ F+++S +  Y  A +  +    L+ +  LGI
Sbjct: 934 GYLDYGCVEKGITFFEQIRES-VEPDRFIMSSAVHFYKLAGKELEAEGILDSMKSLGI 990



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 131/289 (45%), Gaps = 6/289 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + YN  +        L  A  ++D M+  GV P   T++T+IS        +KAVE F
Sbjct: 712 DTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQTYNTMISVYGRGRKLDKAVEMF 771

Query: 224 E--RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
              R    G   D  TY+++I  YG+AG    A  L+   + E  +    +++ +I +Y 
Sbjct: 772 NKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYA 831

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
           TAG       +++ M   G  P+ +TY  L+    ++ +  + +     M + G+ P+  
Sbjct: 832 TAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCV 891

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            +  LL A+ +A + E+   VY  +   G+   V  Y T+L    D G  ++    FE +
Sbjct: 892 HFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLDYGCVEKGITFFEQI 951

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG--FEPNLFV 448
           +  E+ +PD +  SS +      GK  EAE + + M   G  F  NL V
Sbjct: 952 R--ESVEPDRFIMSSAVHFYKLAGKELEAEGILDSMKSLGIPFLKNLEV 998



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/350 (20%), Positives = 150/350 (42%), Gaps = 22/350 (6%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           +L     VI+Y + ++V+ +   +  AE+ F +ML+ G +PD V   T++          
Sbjct: 185 QLSYQPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAGCEPDEVACGTMLCTYARWGRHK 244

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDA------YGRA--------GNVEMAFGLYDRARN 263
             + ++  +   G  P    ++ M+ +      +G+         G VE +F  +   +N
Sbjct: 245 AMLSFYSAVQERGIIPSIAVFNFMLSSLQKKSLHGKVIDFSLVKDGLVEESFKTFYEMKN 304

Query: 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
             +  +   +S LI L    GN D  + +YE+M+   + P+  T  +LL    +     +
Sbjct: 305 LGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNGDYSR 364

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
             +++ EM  N +  +   Y  L+R YG+    ED    ++E ++ G+  +   Y  +  
Sbjct: 365 AVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIAMAQ 424

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
           +  + G  ++A  I E M+ S N     +++  ++     +  ++ AEA F  + + G  
Sbjct: 425 VHLNSGNFEKALTIMELMR-SRNIWFSRFSYIVLLQCYVMKEDLASAEATFQALSKTGL- 482

Query: 444 PNLFVLTSLIQCYGK---AQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
           P+      ++  Y K    ++  D +  + + P   +  D   C  ++ V
Sbjct: 483 PDAGSCNDMLNLYIKLDLLEKAKDFIFQIRKDP---VEFDMELCKTVMKV 529



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 74/373 (19%), Positives = 156/373 (41%), Gaps = 23/373 (6%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           E + Y++ + +  K  + D+A +L++DM  R + P N T ++L++    N   ++AV  F
Sbjct: 310 EEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNGDYSRAVSLF 369

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M       D + Y  +I  YG+ G  E A   +          +   +  + +++  +
Sbjct: 370 SEMEKNKIVADEVIYGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIAMAQVHLNS 429

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           GNF+  L + E M++  +  +  +Y  LL      +     +  ++ ++  GL P+  + 
Sbjct: 430 GNFEKALTIMELMRSRNIWFSRFSYIVLLQCYVMKEDLASAEATFQALSKTGL-PDAGSC 488

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-- 401
             +L  Y +    E       ++++  ++  + L  T++ +    G   +A ++ ++M  
Sbjct: 489 NDMLNLYIKLDLLEKAKDFIFQIRKDPVEFDMELCKTVMKVYCKKGMLRDAKQLIQEMGT 548

Query: 402 ----KSSENCQPDSWTF-------------SSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
               K SE  Q  S                S +I+  +  G +S+A+ + +++++ G   
Sbjct: 549 NGLFKDSEFIQTLSLILKMLLKTAGGLSVASHLISKFTREGDISKAQNLNDQLVKLGRGA 608

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLV 503
               + SLI  YGK  +    +   + +   G T        +++   +  K EE   L 
Sbjct: 609 EDASIASLITLYGKQHKLKKAIEVFSAIE--GCTSGKLIYISMIDAYAKCGKAEEAYHLY 666

Query: 504 ECVEKSNSKLGYV 516
           E V     +LG V
Sbjct: 667 EEVTGKGIELGVV 679



 Score = 42.7 bits (99), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 43/87 (49%)

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           +A + F  MK   + QP    ++ ++ +    GK+  AE  F EMLEAG EP+     ++
Sbjct: 174 QARDFFGWMKLQLSYQPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAGCEPDEVACGTM 233

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITP 479
           +  Y +  R   ++   + + E GI P
Sbjct: 234 LCTYARWGRHKAMLSFYSAVQERGIIP 260


>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
          Length = 854

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 155/318 (48%), Gaps = 3/318 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I Y   +    + +       L   +   G+KPD + F+ +I+ +  +   ++A++ FE
Sbjct: 377 LITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFE 436

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA-RNEKWRIDPNAFSTLIKLYGTA 283
           +M   GC P A T++++I  YG+ G +E +  L D   R+E  + +    + L++ +   
Sbjct: 437 KMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQ 496

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TIYKEMTDNGLSPNWNT 342
              +   N+  +M++ GVKP+++T+N L     R       +  I   M  N + PN  T
Sbjct: 497 RKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRT 556

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
             +++  Y      E+ L  +  MKE G+  ++ ++N+L+    ++   D   E+  D+ 
Sbjct: 557 CGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVV-DLM 615

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
                +PD  TFS+++   S  G +   E ++ +MLE G +P++   + L + Y +A   
Sbjct: 616 EEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEP 675

Query: 463 DDVVRALNRLPELGITPD 480
           +   + LN++ + G+ P+
Sbjct: 676 EKAEQILNQMRKFGVRPN 693



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 133/313 (42%), Gaps = 20/313 (6%)

Query: 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
           C D+    +L + +++RG                    P +A   F  +   G  P  +T
Sbjct: 339 CGDVRSRTKLMNGLIERG-------------------RPQEAHSIFNTLIEEGHKPSLIT 379

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           Y++++ A  R  +      L  +      + D   F+ +I     +GN D  + ++E+MK
Sbjct: 380 YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMK 439

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYG 356
             G KP   T+N L+   G+  +  +   +   M  D  L PN  T   L++A+   R  
Sbjct: 440 ESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKI 499

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           E+  ++  +M+  G++  V  +NTL    A +G T  A ++          +P+  T  +
Sbjct: 500 EEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGT 559

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           ++      GK+ EA   F  M E G  PNLFV  SLI+ +      D V   ++ + E G
Sbjct: 560 IVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFG 619

Query: 477 ITPDDRFCGCLLN 489
           + PD      L+N
Sbjct: 620 VKPDVVTFSTLMN 632



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 123/264 (46%), Gaps = 16/264 (6%)

Query: 91  KEKSYDTR-----YNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLE--QDCVIILNNMT 143
           K +SY  +     +N+L K  A + S    ED +  + R L +      + C  I+N   
Sbjct: 508 KMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPRMLHNKVKPNVRTCGTIVNGYC 565

Query: 144 NPDTAALALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNV 201
                  AL +F    +L     + ++N  +K F    D+D    + D M + GVKPD V
Sbjct: 566 EEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVV 625

Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
           TFSTL++         +  E +  M   G DPD   +S +   Y RAG  E A  + ++ 
Sbjct: 626 TFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQM 685

Query: 262 RNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRA 318
           R  K+ + PN   ++ +I  + +AG     + VY++M  I G+ PN+ TY  L+   G A
Sbjct: 686 R--KFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEA 743

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNT 342
           K+PW+ + + K+M    + P   T
Sbjct: 744 KQPWKAEELLKDMEGKNVVPTRKT 767



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 125/253 (49%), Gaps = 5/253 (1%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMP 227
           N+ ++ +   R +++A  +   M   GVKPD VTF+TL    AR+ +          RM 
Sbjct: 487 NILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRML 546

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGN 285
                P+  T  ++++ Y   G +E A   + R +  +  + PN   F++LIK +    +
Sbjct: 547 HNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMK--ELGVHPNLFVFNSLIKGFLNIND 604

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            DG   V + M+  GVKP+++T++ L++         + + IY +M + G+ P+ + ++ 
Sbjct: 605 MDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSI 664

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L + Y RA   E    +  +M++ G++ +V +Y  +++     G   +A ++++ M    
Sbjct: 665 LAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIV 724

Query: 406 NCQPDSWTFSSMI 418
              P+  T+ ++I
Sbjct: 725 GLSPNLTTYETLI 737



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 7/193 (3%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +++A R F  M + GV P+   F++LI      N  +   E  + M  FG  PD +T+S+
Sbjct: 570 MEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFST 629

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +++A+   G+++    +Y          D +AFS L K Y  AG  +    +  +M+  G
Sbjct: 630 LMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFG 689

Query: 301 VKPNMITYNNLLD---TMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYG 356
           V+PN++ Y  ++    + G  K+  QV   YK+M    GLSPN  TY +L+  +G A+  
Sbjct: 690 VRPNVVIYTQIISGWCSAGEMKKAMQV---YKKMCGIVGLSPNLTTYETLIWGFGEAKQP 746

Query: 357 EDTLSVYREMKEK 369
                + ++M+ K
Sbjct: 747 WKAEELLKDMEGK 759



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 100/202 (49%), Gaps = 5/202 (2%)

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G KP++ITY  L+  + R K    + ++  ++  NGL P+   + +++ A   +   +  
Sbjct: 372 GHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQA 431

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           + ++ +MKE G + + + +NTL+     +G  +E+  + + M   E  QP+  T + ++ 
Sbjct: 432 MKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQ 491

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT---DDVVRALNRLPELG 476
               + K+ EA  +  +M   G +P++    +L + Y +   T   +D++  + R+    
Sbjct: 492 AWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPRMLHNK 549

Query: 477 ITPDDRFCGCLLNVMTQTPKEE 498
           + P+ R CG ++N   +  K E
Sbjct: 550 VKPNVRTCGTIVNGYCEEGKME 571


>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
          Length = 604

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 169/356 (47%), Gaps = 9/356 (2%)

Query: 146 DTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDM--LDRGVKPDNV 201
           D   +A  Y   +  AS   +V+ Y + +    K   +  A R+ D M   D  ++PD V
Sbjct: 151 DVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVV 210

Query: 202 TFSTLISCARMNNLPNKAVEWFE-RMPSF-GCDPDALTYSSMIDAYGRAGNVEMAFGLYD 259
           T +T++     +    +A+ + E RM S  GC P+ +TY+ +IDA+ R GN+ MA+ L +
Sbjct: 211 TLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVE 270

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGR 317
           +  NE    +    +T++     AG     L  + E + +    K N +TY+ L+  +  
Sbjct: 271 KMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLH 330

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
                    ++ E    G SP+   Y +++    +A   ED  S+   MKE G +L    
Sbjct: 331 TNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKA 390

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           YN L+A         EA+E+ ++MK     +PD  T++++++     G  +  + +  +M
Sbjct: 391 YNILIAGFCRKKRLHEAYELLQEMKEV-GIRPDVCTYNTLLSGSCKAGDFAAVDELLGKM 449

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           ++ G +P++    +L+  Y K  + D+ +R L  + E GI P++     L++ + +
Sbjct: 450 IDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCK 505



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 132/275 (48%), Gaps = 1/275 (0%)

Query: 197 KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256
           K + VT+STL+      N    A+E F    S G  PDA+ Y +MI    +AG +E A  
Sbjct: 315 KGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACS 374

Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           +    +   +++D  A++ LI  +           + +EMK +G++P++ TYN LL    
Sbjct: 375 MASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSC 434

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +A     V  +  +M D+G  P+  T+ +L+  Y +    ++ L + R M E G+  +  
Sbjct: 435 KAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNV 494

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
           +YNTL+      G  D A E+F++MK  ++   +  TF++++     +    +A  + ++
Sbjct: 495 IYNTLIDFLCKRGDVDLAIELFDEMK-EKSVPANVTTFNALLKGLRDKNMPEKAFELMDQ 553

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
           M E    P+   +  L++       TD + R + +
Sbjct: 554 MREERCFPDYVTVDVLMEWLPVIGETDRLKRFMQQ 588



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 129/284 (45%), Gaps = 9/284 (3%)

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
           S L + AR+ ++P  A  +          PD +TY  +++   +AG V  A  + D    
Sbjct: 141 SILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSR 200

Query: 264 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEE-MKAI-GVKPNMITYNNLLDTMGRAK 319
           +   I P+    +T++     +G     L   E+ M ++ G  PN +TYN L+D   R  
Sbjct: 201 QDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVG 260

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK---EKGMQLSVT 376
                  + ++M + G+  N  T  +++    RA      L  +RE +    +G   +VT
Sbjct: 261 NISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVT 320

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            Y+TL+           A E+F + K SE   PD+  + +MI+  +  G++ +A +M + 
Sbjct: 321 -YSTLVGALLHTNNVGMAMELFHE-KMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASS 378

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           M EAGF+ +      LI  + + +R  +    L  + E+GI PD
Sbjct: 379 MKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPD 422



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++YN  +    K  D+D A  LFD+M ++ V  +  TF+ L+   R  N+P KA E  ++
Sbjct: 494 VIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQ 553

Query: 226 MPSFGCDPDALTYSSMID 243
           M    C PD +T   +++
Sbjct: 554 MREERCFPDYVTVDVLME 571



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 4/125 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEW 222
           VI +   +  + K   +D+A R+   M + G+ P+NV ++TLI   C R +   + A+E 
Sbjct: 458 VITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDV--DLAIEL 515

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F+ M       +  T+++++         E AF L D+ R E+   D      L++    
Sbjct: 516 FDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWLPV 575

Query: 283 AGNFD 287
            G  D
Sbjct: 576 IGETD 580


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 154/309 (49%), Gaps = 4/309 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI Y + ++   K   + +A +L D+M D+G KPD VT++ LI+        ++A+ + 
Sbjct: 246 DVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFL 305

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             MPS+GC P+ +T++ ++ +    G    A         +        F+ LI      
Sbjct: 306 NHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRK 365

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     ++V E+M   G  PN ++YN LL  + + K+  +       M   G  P+  TY
Sbjct: 366 GLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTY 425

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +LL A  +    +  + +  ++  KG    +  YNT++   + VG TD+A ++ ++MK 
Sbjct: 426 NTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKG 485

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +  +PD  T+S+++   S  GKV EA A F+++ E G +PN     S++    KA++T 
Sbjct: 486 -KGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQT- 543

Query: 464 DVVRALNRL 472
             VRA++ L
Sbjct: 544 --VRAIDFL 550



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 150/321 (46%), Gaps = 6/321 (1%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A  +VI YNV +  + K  ++  A +L D M    V PD VT++T++     +    +A+
Sbjct: 176 AVPDVITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAM 232

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E  +R     C PD +TY+ +I+A  +   V  A  L D  R++  + D   ++ LI   
Sbjct: 233 EVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGI 292

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G  D  +     M + G +PN+IT+N +L +M    R    +    EM   G SP+ 
Sbjct: 293 CKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSV 352

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFE 399
            T+  L+    R       + V  +M + G   +   YN LL A+C D    + A E + 
Sbjct: 353 VTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKD-KKMERAIE-YL 410

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           D+  S  C PD  T+++++T     GKV  A  + N++   G  P L    ++I    K 
Sbjct: 411 DIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKV 470

Query: 460 QRTDDVVRALNRLPELGITPD 480
            +TDD ++ L+ +   G+ PD
Sbjct: 471 GKTDDAIKLLDEMKGKGLKPD 491



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 154/327 (47%), Gaps = 7/327 (2%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
           +++  S +V+ YN  ++       L +A  + D  + R   PD +T++ LI      +  
Sbjct: 204 DRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGV 263

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS-- 274
            +A++  + M   GC PD +TY+ +I+   + G ++ A    +      +   PN  +  
Sbjct: 264 GQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHM--PSYGCQPNVITHN 321

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            +++   + G +        EM   G  P+++T+N L++ + R     +   + ++M  +
Sbjct: 322 IILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQH 381

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDE 393
           G +PN  +Y  LL A  + +  E  +     M  +G    +  YNTLL A+C D G  D 
Sbjct: 382 GCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKD-GKVDV 440

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A EI   +  S+ C P   T++++I   S  GK  +A  + +EM   G +P++   ++L+
Sbjct: 441 AVEILNQL-GSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLV 499

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPD 480
               +  + D+ +   + L E+G+ P+
Sbjct: 500 GGLSREGKVDEAIAFFHDLEEMGVKPN 526



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 129/277 (46%), Gaps = 1/277 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI +N+ ++          AE+   +M+ +G  P  VTF+ LI+      L  +A++  E
Sbjct: 317 VITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLE 376

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +MP  GC P++L+Y+ ++ A  +   +E A    D   +     D   ++TL+      G
Sbjct: 377 KMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDG 436

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  + +  ++ + G  P +ITYN ++D + +  +      +  EM   GL P+  TY+
Sbjct: 437 KVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYS 496

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+    R    ++ ++ + +++E G++ +   YN+++        T  A +    M  +
Sbjct: 497 TLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYM-VA 555

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
             C+P   ++  +I   +  G   EA  + NE+   G
Sbjct: 556 RGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRG 592



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 100/204 (49%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +    K + +++A    D M+ RG  PD VT++TL++    +   + AVE   ++ 
Sbjct: 390 YNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLG 449

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S GC P  +TY+++ID   + G  + A  L D  + +  + D   +STL+      G  D
Sbjct: 450 SKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVD 509

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             +  + +++ +GVKPN ITYN+++  + +A++  +       M   G  P   +Y  L+
Sbjct: 510 EAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILI 569

Query: 348 RAYGRARYGEDTLSVYREMKEKGM 371
                    ++ L +  E+  +G+
Sbjct: 570 EGLAYEGLAKEALELLNELCSRGV 593



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 143/336 (42%), Gaps = 12/336 (3%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           +L++  +  +DM+ RG  PD +  ++LI          KA    E +   G  PD +TY+
Sbjct: 125 ELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYN 184

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMK 297
            +I  Y + G +  A  L DR       + P+   ++T+++    +G     + V +   
Sbjct: 185 VLISGYCKTGEIGSALQLLDR-----MSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQM 239

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
                P++ITY  L++   +     Q   +  EM D G  P+  TY  L+    +    +
Sbjct: 240 QRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLD 299

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           + +     M   G Q +V  +N +L +MC+   + D    + E ++  + C P   TF+ 
Sbjct: 300 EAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIR--KGCSPSVVTFNI 357

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I     +G +  A  +  +M + G  PN      L+    K ++ +  +  L+ +   G
Sbjct: 358 LINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRG 417

Query: 477 ITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSK 512
             PD      LL  + +  K ++   VE + +  SK
Sbjct: 418 CYPDIVTYNTLLTALCKDGKVDVA--VEILNQLGSK 451



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 4/197 (2%)

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +      E+M   G  P++I   +L+  + +  + W+   + + + D+G  P+  TY
Sbjct: 124 GELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITY 183

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             L+  Y   + GE   S  + +    +   V  YNT+L    D G   EA E+  D + 
Sbjct: 184 NVLISGY--CKTGEIG-SALQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVL-DRQM 239

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
              C PD  T++ +I        V +A  + +EM + G +P++     LI    K  R D
Sbjct: 240 QRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLD 299

Query: 464 DVVRALNRLPELGITPD 480
           + +R LN +P  G  P+
Sbjct: 300 EAIRFLNHMPSYGCQPN 316



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A   L    +K   S  +I YN  +    K    D A +L D+M  +G+KPD +T+ST
Sbjct: 439 DVAVEILNQLGSK-GCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYST 497

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA--FGLYDRARN 263
           L+         ++A+ +F  +   G  P+A+TY+S++    +A     A  F  Y  AR 
Sbjct: 498 LVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARG 557

Query: 264 EKWRIDPNAFSTLIKLYGTA 283
            K    P   S +I + G A
Sbjct: 558 CK----PTETSYMILIEGLA 573


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 188/404 (46%), Gaps = 23/404 (5%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G+ PD  T S LI C       + A   F +M   G  PDA+T++++I+   + G    A
Sbjct: 125 GLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQA 184

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
              +D       +     ++T+I      G       ++++M+  G +PN++TYN L+D+
Sbjct: 185 VEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDS 244

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           + + K   +   I+  M    +SP+  TY SL++     R  ++  ++  EM    +  +
Sbjct: 245 LCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPN 304

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           +  +N L+      G   EA  +F+ M +    +PD  T+SS++   S R ++ EA  +F
Sbjct: 305 IFTFNVLVDAICKEGKVSEAQGVFKTM-TEMGVEPDVVTYSSLMYGYSLRMEIVEARKLF 363

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           + M+  G +P+ F    LI+ Y KA+R D+  +  N +   G+TPD+     L++ + Q 
Sbjct: 364 DAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQ- 422

Query: 495 PKEELGKLVECVE-----KSNSKLG--YVVKLLLEEQDIEGDFKKEATELFNSISKDVKK 547
               LG+L E  +      SN  L   +   +LL+    EG   K A  LF  +     K
Sbjct: 423 ----LGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGK-AFRLFRVMQSTYLK 477

Query: 548 ---AYCNCLIDLCVNLNLLENACKLL-EL---GL--TLEVYTDI 582
              A  N LID       L++A KL  EL   GL   +++YT I
Sbjct: 478 PDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTI 521



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 158/366 (43%), Gaps = 16/366 (4%)

Query: 128 DDFLEQDC-------VIILNNM--TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKC 178
           DDF    C         I+N +      TAA  L     +      V+ YN+ +    K 
Sbjct: 189 DDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKD 248

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           + +++A  +F  M  + + PD  T+++LI          +A      M S    P+  T+
Sbjct: 249 KLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTF 308

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           + ++DA  + G V  A G++          D   +S+L+  Y           +++ M  
Sbjct: 309 NVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMIT 368

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP---NWNTYASLLRAYGRARY 355
            G KP+  +YN L+    +AKR  + K ++ EM   GL+P   N+NT    L   GR R 
Sbjct: 369 KGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLRE 428

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            +D   +++ M   G    +  Y+ LL      GY  +AF +F  M+S+   +PD   ++
Sbjct: 429 AQD---LFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTY-LKPDIAMYN 484

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
            +I      G + +A  +F+E+   G  PN+ + T++I    K    D+ + A   +   
Sbjct: 485 ILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGD 544

Query: 476 GITPDD 481
           G  PD+
Sbjct: 545 GCPPDE 550



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 150/333 (45%), Gaps = 3/333 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL +  +    + S ++  YN  ++     R   +A  L ++M    + P+  TF+ L+ 
Sbjct: 254 ALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVD 313

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+ M   G +PD +TYSS++  Y     +  A  L+D    +  + 
Sbjct: 314 AICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKP 373

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D  +++ LIK Y  A   D    ++ EM   G+ P+ + YN L+  + +  R  + + ++
Sbjct: 374 DAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLF 433

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD 387
           K M  NG  P+  TY+ LL  + +  Y      ++R M+   ++  + +YN L+ AMC  
Sbjct: 434 KNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMC-K 492

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G   +A ++F ++   +   P+   ++++I      G + EA   F  M   G  P+ F
Sbjct: 493 FGNLKDARKLFSEL-FVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEF 551

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               +I+ + + +      + +  + + G   +
Sbjct: 552 SYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAE 584



 Score = 43.1 bits (100), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE-AGFEPNLFVLT 450
           D+A   F  M   E   P    F+ +++     G+   A    ++ +E AG  P+++ L+
Sbjct: 76  DDALASFNHMLHREPL-PCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLS 134

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
            LI C+   QR D      +++ +LG+ PD      L+N + +     +GK  + VE
Sbjct: 135 ILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCK-----VGKFAQAVE 186


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 153/323 (47%), Gaps = 3/323 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERM 226
           Y + +      RD+ K E LF++M    V  D   ++ +I+   R  N+  +A +  +  
Sbjct: 250 YTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNM-RRAAKVLDEC 308

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G +P+  TY  +I+ + + G +E A  L    + +   ++   F+T+I  Y   G  
Sbjct: 309 VGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMV 368

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  L +   M+ +GV+ ++ TYN L   + R  R  + KT+   M + G+ PN+ TY +L
Sbjct: 369 DDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTL 428

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  + +     +   ++REM EKG   SV  YN ++      G   EA E F      + 
Sbjct: 429 ISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREA-ERFRKEMEKKG 487

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             PD +T++S++      GKV  A  +F EM + G EPN+   T+LI    K  R++   
Sbjct: 488 FVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAF 547

Query: 467 RALNRLPELGITPDDRFCGCLLN 489
           +  + + + G+ PDD     L+ 
Sbjct: 548 QLYDDMLKAGLIPDDSLYSALVG 570



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 95/199 (47%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL +     K+    ++  YN       +   LD+A+ L   M++ GV P+ VT++TLIS
Sbjct: 371 ALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLIS 430

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               +    +A   F  M   G  P  +TY+ MID Y + G++  A         + +  
Sbjct: 431 IHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVP 490

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +++L+  +   G  D  L ++EEMK  G +PN++ Y  L+  + +  R      +Y
Sbjct: 491 DVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLY 550

Query: 329 KEMTDNGLSPNWNTYASLL 347
            +M   GL P+ + Y++L+
Sbjct: 551 DDMLKAGLIPDDSLYSALV 569



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 102/234 (43%), Gaps = 2/234 (0%)

Query: 248 AGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           AG +  A GL +RA       + P A S ++     +G  D    + ++M   GV  N +
Sbjct: 154 AGRLADAAGLLERALGSCPGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNAL 213

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
            YN+LLD   R K   +V+ I + M + G+     TY  L+ +   AR      +++ EM
Sbjct: 214 CYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEM 273

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           K   +   V LY  ++      G    A ++ ++   +   +P+  T+  +I      G+
Sbjct: 274 KANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGN-GVEPNERTYGVLINGFCKIGQ 332

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  AE +  +M   G   N  +  ++I  Y +    DD ++    + ++G+  D
Sbjct: 333 MEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELD 386



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 7/150 (4%)

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLL---AMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
           +D   +  +M   G+ L+   YN+LL       D G   E  EI E+    E  +    T
Sbjct: 194 DDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMEN----EGIEATVGT 249

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           ++ ++   S    +S+ EA+FNEM       ++++ T++I  Y +A       + L+   
Sbjct: 250 YTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECV 309

Query: 474 ELGITPDDRFCGCLLNVMTQTPKEELGKLV 503
             G+ P++R  G L+N   +  + E  +++
Sbjct: 310 GNGVEPNERTYGVLINGFCKIGQMEAAEML 339


>gi|296083087|emb|CBI22491.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 134/265 (50%), Gaps = 1/265 (0%)

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
           P  A+E   +M   G  PD  TY++++  + +AG  + A  +++  RNE  + +   F+ 
Sbjct: 85  PPDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNA 144

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LIK++G  G F   + V+E++K     P+++T+N LL   G+     +V  ++KEM   G
Sbjct: 145 LIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAG 204

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
             P  +T+ +L+ +Y R    +  ++VY+ M E G+   ++ YN +LA  A  G   ++ 
Sbjct: 205 FVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSE 264

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           ++  +MK    C+P+  T+ S++   +   ++    A+  E+     EP   +L +L+  
Sbjct: 265 KVLAEMKDGR-CKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLV 323

Query: 456 YGKAQRTDDVVRALNRLPELGITPD 480
             K     +  RA   L + G +PD
Sbjct: 324 NSKCDLLMETERAFLELRQRGFSPD 348



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 148/317 (46%), Gaps = 1/317 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y   +  F K      A ++F++M + G KP+  TF+ LI          + ++ F
Sbjct: 103 DVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVF 162

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E + +F C PD +T+++++  +G+ G      G++   +   +  + + F+TLI  Y   
Sbjct: 163 EDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRC 222

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+FD  + VY+ M   GV P++ +YN +L  + R     Q + +  EM D    PN  TY
Sbjct: 223 GSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTY 282

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            SLL AY   +  E   ++  E+    ++    L  TL+ + +      E    F +++ 
Sbjct: 283 CSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELR- 341

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                PD  T ++M++I   R  V++A  + + M   GF P+L    SL+  Y ++   +
Sbjct: 342 QRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFE 401

Query: 464 DVVRALNRLPELGITPD 480
                L  +   GI PD
Sbjct: 402 RSEEILREILAKGIRPD 418



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 138/310 (44%), Gaps = 5/310 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N  +  + +C   D+A  ++  ML+ GV PD  +++ +++      L  ++ +    M 
Sbjct: 212 FNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMK 271

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGN 285
              C P+ LTY S++ AY     +E    L +   +    I+P A    TL+ +      
Sbjct: 272 DGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYS--GIIEPRAVLLKTLVLVNSKCDL 329

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                  + E++  G  P++ T N ++   GR +   +   I   M   G +P+  TY S
Sbjct: 330 LMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNS 389

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  Y R+   E +  + RE+  KG++  +  YNT++      G   +A  +  +M+ S 
Sbjct: 390 LMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRES- 448

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              PD  T+++ I   +      EA  +   M++ G +PN     S++  Y K  R D+ 
Sbjct: 449 GPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEA 508

Query: 466 VRALNRLPEL 475
              +N L +L
Sbjct: 509 SMFVNNLRKL 518



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 141/316 (44%), Gaps = 1/316 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +  +N  +K+        +  ++F+D+      PD VT++TL+S    N + ++    F+
Sbjct: 139 ICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFK 198

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  P+  T++++I +Y R G+ + A  +Y R        D ++++ ++      G
Sbjct: 199 EMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGG 258

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            +     V  EMK    KPN +TY +LL      K   ++  + +E+    + P      
Sbjct: 259 LWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLK 318

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+    +     +T   + E++++G    +T  N ++++        +A EI + MK  
Sbjct: 319 TLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRG 378

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               P   T++S++ + S       +E +  E+L  G  P++    ++I  Y +  R  D
Sbjct: 379 -GFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRD 437

Query: 465 VVRALNRLPELGITPD 480
             R L+ + E G  PD
Sbjct: 438 ASRVLSEMRESGPAPD 453



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 104/229 (45%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   +  +   +++++   L +++    ++P  V   TL+      +L  +    F  
Sbjct: 280 LTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLE 339

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +   G  PD  T ++M+  YGR   V  A  + D  +   +      +++L+ +Y  + N
Sbjct: 340 LRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSAN 399

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F+    +  E+ A G++P++I+YN ++    R  R      +  EM ++G +P+  TY +
Sbjct: 400 FERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNT 459

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
            + +Y       + + V   M + G + + + YN+++     +   DEA
Sbjct: 460 FIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEA 508



 Score = 46.6 bits (109), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 45/82 (54%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I YN  +  + +   +  A R+  +M + G  PD +T++T I+    +++  +A++  
Sbjct: 418 DIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVV 477

Query: 224 ERMPSFGCDPDALTYSSMIDAY 245
             M   GC P+  TY+S++D Y
Sbjct: 478 CYMIKHGCKPNQSTYNSIVDWY 499


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 151/303 (49%), Gaps = 5/303 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEW 222
           +V  +N  M+ F +  +++KA  ++  M++ G KPDNV++  LI   A++  L +++++ 
Sbjct: 44  DVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKL-DESLKI 102

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
              M   G  P    YSS++ A  +A  V+ A  L+D         D   F  LI     
Sbjct: 103 LSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQ 162

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           AG        +++M   G +PN+  YN LL  +  + +  Q  T++ EM  +  SP+  T
Sbjct: 163 AGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVT 222

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +LL A  +AR  E+   ++  M+  G   +V  ++TL+      G  ++A E+F  M 
Sbjct: 223 YNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSML 282

Query: 403 SSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
            +  C+P+ +T++++I+   CR  KV +A  +F +M +A   P+     SLI  Y K   
Sbjct: 283 EA-GCKPNKYTYTTLISGL-CRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGS 340

Query: 462 TDD 464
            D+
Sbjct: 341 MDE 343



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 139/291 (47%), Gaps = 3/291 (1%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           M D+ +  +  T+S++I        P ++ +  E M + GC+PD   ++ ++  + R+ N
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
           +E A  +Y       ++ D  ++  LI      G  D  L +  EM   G  P+M  Y++
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L+  + +A+R     +++ EM   G  P+   +  L+    +A   +D    +++M + G
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG 180

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSE 429
            Q +V +YN LL      G  ++A  +F +MK S +C PD  T+++++  +C  R +V E
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQANTLFAEMK-SHSCSPDVVTYNTLLDAVCKAR-RVEE 238

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              +F  M  AG+ PN+   ++LI    +    +  +     + E G  P+
Sbjct: 239 GCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPN 289



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 142/327 (43%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  ++   K R +D A  LFD+M+  G  PD + F  LI           A E F++MP
Sbjct: 118 YSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMP 177

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P+   Y+ ++     +G +E A  L+   ++     D   ++TL+     A   +
Sbjct: 178 KHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVE 237

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++E M+A G  PN+IT++ L+  + R     +   ++  M + G  PN  TY +L+
Sbjct: 238 EGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLI 297

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               RA        ++ +M +  +      YN+L+A     G  DEA +++ +M      
Sbjct: 298 SGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGL 357

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           QP   TF+++I      GK+  A  +  EM   G   +      LI    +A + D+ + 
Sbjct: 358 QPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALE 417

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQT 494
              ++ E     D   C   +  + +T
Sbjct: 418 VYKQMREKKFLLDPVSCVSFVGGLCKT 444



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 130/274 (47%), Gaps = 2/274 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V+ YN  +    K R +++  +LF+ M   G  P+ +TFSTLI          KA+E
Sbjct: 217 SPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALE 276

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F  M   GC P+  TY+++I    RA  V  A  L+++        D  A+++LI  Y 
Sbjct: 277 VFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYC 336

Query: 282 TAGNFDGCLNVYEEMK-AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
             G+ D    +Y EM    G++P ++T+N L+D   +  +  +   +  EM   GL+ + 
Sbjct: 337 KRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADS 396

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY  L+    RA   ++ L VY++M+EK   L      + +      G  D+A+ +FE 
Sbjct: 397 CTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEA 456

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
            + S    P+  TF  +       G+V +A+ + 
Sbjct: 457 TRKS-GAVPNPETFRILSESLIKLGRVEDAQKLM 489



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 146/317 (46%), Gaps = 3/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           V  Y+  +K   K    +++ ++ ++M+  G  PD   F+ ++   AR NN+  KA E +
Sbjct: 10  VFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNM-EKAREVY 68

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   G  PD ++Y  +I    + G ++ +  +              A+S+L++    A
Sbjct: 69  QHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKA 128

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D   ++++EM   G  P+ + +  L+  + +A +       +K+M  +G  PN   Y
Sbjct: 129 RRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVY 188

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             LL     +   E   +++ EMK       V  YNTLL         +E  ++FE M++
Sbjct: 189 NVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRA 248

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +    P+  TFS++I      G++ +A  +F  MLEAG +PN +  T+LI    +A++  
Sbjct: 249 A-GYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVI 307

Query: 464 DVVRALNRLPELGITPD 480
                  ++ +  I PD
Sbjct: 308 QARELFEKMTQACIPPD 324


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 153/312 (49%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D+D+A  +F++ +++G+KP+ V  +TL+       L  +A++    M   GC PD  TY+
Sbjct: 370 DIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYN 429

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +I+   + G V  A  L   A  +    D   F+TLI  Y      D  + + + M   
Sbjct: 430 LVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNH 489

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           GV P++ITYN++L+ + +A +   V   +K M + G  PN  TY  L  ++ +AR  E+ 
Sbjct: 490 GVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEA 549

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           L++  EM+ KG+   V  + TL+    D G  D A+++F+ +           T++ MI 
Sbjct: 550 LNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMIN 609

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             + +  ++ AE +FN+M E GF P+ +    +I  + K    +     L    E G+ P
Sbjct: 610 AFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIP 669

Query: 480 DDRFCGCLLNVM 491
                G +LN +
Sbjct: 670 SLTTFGRVLNCL 681



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 168/375 (44%), Gaps = 47/375 (12%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  + + MK F +      A RL ++M  +G +   V + T+I      N   +A E F
Sbjct: 145 DVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELF 204

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  PD + ++ +I    R G+V+ +  L ++    K  + PN F+  I + G  
Sbjct: 205 EEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVL--KRGVSPNLFTVNIFIQGFC 262

Query: 284 GNFDGCLNVYEEMKAI-----GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
                 LN  E ++ +     G+ P++ITYN L+  + +  +  + +   ++M + G  P
Sbjct: 263 QR--AMLN--EAIRLLDGVGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEP 318

Query: 339 NWNTYASLLRAY---------------------------------GRARYGE--DTLSVY 363
           +  TY S++  Y                                 G  + G+    ++V+
Sbjct: 319 DGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVF 378

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
            E  EKG++ ++ L NTL+   +  G   +A ++  +M S   C PD WT++ +I     
Sbjct: 379 NEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEM-SENGCSPDIWTYNLVINGLCK 437

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
            G VS+A+ +  + +  G  P++F   +LI  Y K  + D+ +  ++R+   G++PD   
Sbjct: 438 IGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVIT 497

Query: 484 CGCLLNVMTQTPKEE 498
              +LN + +  K E
Sbjct: 498 YNSILNGLCKAGKYE 512



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 131/295 (44%), Gaps = 9/295 (3%)

Query: 216 PNKAVEWFERMPSF-GCDPDALTYSSMIDAYGRAGNVE-MAFGLYDRARNEKWRIDPNAF 273
           P KA+E F  +    G     LTY  MI+  G  G  E M   L +   N    +    +
Sbjct: 20  PLKALEIFNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAETRMNIDNGLLEGVY 79

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
              ++ YG  G     ++V+E M     +P++ +YN +++ +   +   Q   +Y  M D
Sbjct: 80  IGAMRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRD 139

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
            G+ P+  T+   ++++ R         +   M  +G + S   Y T++    +  +  E
Sbjct: 140 KGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVE 199

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A E+FE+M     C PD   F+ +I     +G V E+E + N++L+ G  PNLF +   I
Sbjct: 200 AHELFEEMLGLGIC-PDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFI 258

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPD-----DRFCGCLLNVMTQTPKEELGKLV 503
           Q + +    ++ +R L+ +   G+TPD        CG   N      +  L K+V
Sbjct: 259 QGFCQRAMLNEAIRLLDGVGR-GLTPDVITYNTLICGLCKNFKVVEAEHYLRKMV 312



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 91/218 (41%), Gaps = 13/218 (5%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
            S +VI YN  +    K    +     F  M+++G  P+ +T++ L           +A+
Sbjct: 491 VSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEAL 550

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
              E M + G  PD + + +++  +   G+++ A+ L+ R  +E+++     FS  I  Y
Sbjct: 551 NLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRV-DEQYK-----FSHTIATY 604

Query: 281 GTAGN-FDGCLN------VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
               N F G LN      ++ +M   G  P+  TY  ++D   +        +      +
Sbjct: 605 NIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIE 664

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
            GL P+  T+  +L      R   + + +   M  KG+
Sbjct: 665 KGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGI 702


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 149/290 (51%), Gaps = 2/290 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF-STLISCARMNNLPNKAVEWFE 224
           ++Y+  ++ F    DL KA+ L  +M+D+G+   N+TF S++I           A + F 
Sbjct: 518 VVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFN 577

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G  PD  T++S+ID Y   G ++ AFG+ D   +     D   +STLI  Y  +G
Sbjct: 578 LVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSG 637

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  L ++ EM    VKP  +TY+ +LD + RA R    K ++ EM ++G + + +TY 
Sbjct: 638 RIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYT 697

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            +L+   R    ++ ++++ ++    ++  + + NT++     V   +EA ++F  + S+
Sbjct: 698 IILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASV-SA 756

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
               P++ T+  MI      G V EA+ MF+ M + G  P+  +L  +I+
Sbjct: 757 SGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIR 806



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 147/316 (46%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +    K R +DKAE +   M D  ++PD VT++ +I          +A + F+
Sbjct: 307 VVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFK 366

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  PD +T++S++D+  +    + A  ++     +  + D  ++S L+  Y T G
Sbjct: 367 EMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEG 426

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            F    N++  M   G+  +   +N L++   +     +   I+ EM   G+SPN  TYA
Sbjct: 427 RFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYA 486

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +++ A  R     D +    +M   G++ +  +Y++L+      G   +A E+  +M   
Sbjct: 487 TVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQ 546

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              +P+   FSS+I      G+V  A+ +FN ++  G  P++F   SLI  Y    + D 
Sbjct: 547 GIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDK 606

Query: 465 VVRALNRLPELGITPD 480
               L+ +   G  PD
Sbjct: 607 AFGVLDAMVSAGTEPD 622



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 160/362 (44%), Gaps = 2/362 (0%)

Query: 120 FSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR 179
            S L C+ D F     +  L   +    A   L   T     S +V+ Y + +       
Sbjct: 227 MSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEG 286

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           ++ KA  LF++M+ +GV P+ VT+++++         +KA     +M      PD +TY+
Sbjct: 287 EISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYT 346

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           +MI  Y   G  + A  ++     E    D   F++L+              ++  +   
Sbjct: 347 AMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATK 406

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G KP++I+Y+ LL       R   +  ++  MTDNG+  + + +  L+ A+ +    ++ 
Sbjct: 407 GHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEA 466

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           L ++ EM+ +G+  +V  Y T++A    +G   +A E    M S    +P++  + S+I 
Sbjct: 467 LLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISI-GLKPNTVVYHSLIQ 525

Query: 420 ICSCRGKVSEAEAMFNEMLEAGF-EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                G + +A+ + +EM++ G   PN+   +S+I       R  +     N +  +G  
Sbjct: 526 GFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDR 585

Query: 479 PD 480
           PD
Sbjct: 586 PD 587



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 168/372 (45%), Gaps = 15/372 (4%)

Query: 146 DTAALALTYFTN--KLKASKEVI-----LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKP 198
           D  ALA+  F    + +A   V+      Y + M    + R  D     F  +L  G++ 
Sbjct: 139 DAPALAVALFNRICREEAGPRVVPLTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRT 198

Query: 199 DNVTFSTLISCARMNNLPNKAVEWF-ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           D +  +T + C       ++A+     RM   GC PDA +Y+++I +       + A  +
Sbjct: 199 DGIVTNTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDM 258

Query: 258 YDR-ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
             R  + +    D  +++ +I      G      N++ EM   GV PN++TYN+++  + 
Sbjct: 259 LLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALC 318

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +A+   + + + ++M DN + P+  TY +++  Y      ++   +++EM  +G+   + 
Sbjct: 319 KARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIV 378

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            +N+L+        + EA EIF  + +++  +PD  ++S ++   +  G+  +   +F+ 
Sbjct: 379 TFNSLMDSLCKHKRSKEAAEIFHSI-ATKGHKPDIISYSILLHGYATEGRFVDMNNLFHS 437

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           M + G   +      LI  + K    D+ +     +   G++P+      ++  + +   
Sbjct: 438 MTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCR--- 494

Query: 497 EELGKLVECVEK 508
             +G+L + +EK
Sbjct: 495 --MGRLADAMEK 504



 Score = 45.8 bits (107), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 35/185 (18%), Positives = 75/185 (40%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y+  +  + K   +D    LF +ML + VKP  VT+S ++         + A + F
Sbjct: 622 DVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMF 681

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G      TY+ ++    R    + A  L+ +      + +    +T+I      
Sbjct: 682 HEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKV 741

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              +   +++  + A G+ PN  TY  ++  + +     +   ++  M   G +P+    
Sbjct: 742 KRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLL 801

Query: 344 ASLLR 348
             ++R
Sbjct: 802 NDIIR 806


>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
          Length = 831

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 155/318 (48%), Gaps = 3/318 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I Y   +    + +       L   +   G+KPD + F+ +I+ +  +   ++A++ FE
Sbjct: 354 LITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFE 413

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA-RNEKWRIDPNAFSTLIKLYGTA 283
           +M   GC P A T++++I  YG+ G +E +  L D   R+E  + +    + L++ +   
Sbjct: 414 KMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQ 473

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TIYKEMTDNGLSPNWNT 342
              +   N+  +M++ GVKP+++T+N L     R       +  I   M  N + PN  T
Sbjct: 474 RKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRT 533

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
             +++  Y      E+ L  +  MKE G+  ++ ++N+L+    ++   D   E+  D+ 
Sbjct: 534 CGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVV-DLM 592

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
                +PD  TFS+++   S  G +   E ++ +MLE G +P++   + L + Y +A   
Sbjct: 593 EEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEP 652

Query: 463 DDVVRALNRLPELGITPD 480
           +   + LN++ + G+ P+
Sbjct: 653 EKAKQILNQMRKFGVRPN 670



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 133/313 (42%), Gaps = 20/313 (6%)

Query: 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
           C D+    +L + +++RG                    P +A   F  +   G  P  +T
Sbjct: 316 CGDVRSRTKLMNGLIERG-------------------RPQEAHSIFNTLIEEGHKPSLIT 356

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           Y++++ A  R  +      L  +      + D   F+ +I     +GN D  + ++E+MK
Sbjct: 357 YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMK 416

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYG 356
             G KP   T+N L+   G+  +  +   +   M  D  L PN  T   L++A+   R  
Sbjct: 417 ESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKI 476

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           E+  ++  +M+  G++  V  +NTL    A +G T  A ++          +P+  T  +
Sbjct: 477 EEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGT 536

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           ++      GK+ EA   F  M E G  PNLFV  SLI+ +      D V   ++ + E G
Sbjct: 537 IVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFG 596

Query: 477 ITPDDRFCGCLLN 489
           + PD      L+N
Sbjct: 597 VKPDVVTFSTLMN 609



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 123/264 (46%), Gaps = 16/264 (6%)

Query: 91  KEKSYDTR-----YNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLE--QDCVIILNNMT 143
           K +SY  +     +N+L K  A + S    ED +  + R L +      + C  I+N   
Sbjct: 485 KMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPRMLHNKVKPNVRTCGTIVNGYC 542

Query: 144 NPDTAALALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNV 201
                  AL +F    +L     + ++N  +K F    D+D    + D M + GVKPD V
Sbjct: 543 EEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVV 602

Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
           TFSTL++         +  E +  M   G DPD   +S +   Y RAG  E A  + ++ 
Sbjct: 603 TFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQM 662

Query: 262 RNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRA 318
           R  K+ + PN   ++ +I  + +AG     + VY++M  I G+ PN+ TY  L+   G A
Sbjct: 663 R--KFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEA 720

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNT 342
           K+PW+ + + K+M    + P   T
Sbjct: 721 KQPWKAEELLKDMEGKNVVPTRKT 744



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 125/253 (49%), Gaps = 5/253 (1%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMP 227
           N+ ++ +   R +++A  +   M   GVKPD VTF+TL    AR+ +          RM 
Sbjct: 464 NILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRML 523

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGN 285
                P+  T  ++++ Y   G +E A   + R +  +  + PN   F++LIK +    +
Sbjct: 524 HNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMK--ELGVHPNLFVFNSLIKGFLNIND 581

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            DG   V + M+  GVKP+++T++ L++         + + IY +M + G+ P+ + ++ 
Sbjct: 582 MDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSI 641

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L + Y RA   E    +  +M++ G++ +V +Y  +++     G   +A ++++ M    
Sbjct: 642 LAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIV 701

Query: 406 NCQPDSWTFSSMI 418
              P+  T+ ++I
Sbjct: 702 GLSPNLTTYETLI 714



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 7/193 (3%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +++A R F  M + GV P+   F++LI      N  +   E  + M  FG  PD +T+S+
Sbjct: 547 MEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFST 606

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +++A+   G+++    +Y          D +AFS L K Y  AG  +    +  +M+  G
Sbjct: 607 LMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQMRKFG 666

Query: 301 VKPNMITYNNLLD---TMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYG 356
           V+PN++ Y  ++    + G  K+  QV   YK+M    GLSPN  TY +L+  +G A+  
Sbjct: 667 VRPNVVIYTQIISGWCSAGEMKKAMQV---YKKMCGIVGLSPNLTTYETLIWGFGEAKQP 723

Query: 357 EDTLSVYREMKEK 369
                + ++M+ K
Sbjct: 724 WKAEELLKDMEGK 736



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 100/202 (49%), Gaps = 5/202 (2%)

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G KP++ITY  L+  + R K    + ++  ++  NGL P+   + +++ A   +   +  
Sbjct: 349 GHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQA 408

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           + ++ +MKE G + + + +NTL+     +G  +E+  + + M   E  QP+  T + ++ 
Sbjct: 409 MKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQ 468

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT---DDVVRALNRLPELG 476
               + K+ EA  +  +M   G +P++    +L + Y +   T   +D++  + R+    
Sbjct: 469 AWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPRMLHNK 526

Query: 477 ITPDDRFCGCLLNVMTQTPKEE 498
           + P+ R CG ++N   +  K E
Sbjct: 527 VKPNVRTCGTIVNGYCEEGKME 548


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 182/371 (49%), Gaps = 7/371 (1%)

Query: 137  IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
            I++N         LAL      +K   E  ++  +  +  +   + + +A  L D M   
Sbjct: 735  ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 794

Query: 195  GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
            G +P+ VTF+TLI    ++N  ++A+   +RM + GC PD +TY  +++   + G+ ++A
Sbjct: 795  GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 854

Query: 255  FGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            F L ++   E+ +++P    ++T+I       + D  LN+++EM+  G++PN++TY++L+
Sbjct: 855  FNLLNKM--EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 912

Query: 313  DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
              +    R      +  +M +  ++P+  T+++L+ A+ +     +   +Y EM ++ + 
Sbjct: 913  SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 972

Query: 373  LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
             S+  Y++L+         DEA ++FE M  S++C PD  T++++I       +V E   
Sbjct: 973  PSIVTYSSLINGFCMHDRLDEAKQMFEFM-VSKHCFPDVVTYNTLIKGFCKYKRVEEGME 1031

Query: 433  MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            +F EM + G   N      LIQ   +A   D        +   G+ P+      LL+ + 
Sbjct: 1032 VFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 1091

Query: 493  QTPKEELGKLV 503
            +  K E   +V
Sbjct: 1092 KNGKLEKAMVV 1102



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 174/395 (44%), Gaps = 44/395 (11%)

Query: 137  IILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
            +++N +       LA     NK++  K    V++YN  +    K + +D A  LF +M  
Sbjct: 840  VVVNGLCKRGDTDLAFNLL-NKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 898

Query: 194  RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
            +G++P+ VT+S+LISC       + A      M     +PD  T+S++IDA+ + G +  
Sbjct: 899  KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 958

Query: 254  AFGLYDRARNEKWRIDPN-------------------------------------AFSTL 276
            A  LYD     K  IDP+                                      ++TL
Sbjct: 959  AEKLYDEM--VKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 1016

Query: 277  IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
            IK +      +  + V+ EM   G+  N +TYN L+  + +A      + I+KEM  +G+
Sbjct: 1017 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 1076

Query: 337  SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
             PN  TY +LL    +    E  + V+  ++   M+ ++  YN ++      G  ++ ++
Sbjct: 1077 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 1136

Query: 397  IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
            +F ++ S +  +PD   +++MI+    +G   EA+A+F EM E G  PN     +LI+  
Sbjct: 1137 LFCNL-SLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRAR 1195

Query: 457  GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
             +    +     +  +   G   D    G + N++
Sbjct: 1196 LRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 1230



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 159/333 (47%), Gaps = 3/333 (0%)

Query: 149  ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
            A+AL     K +    +I ++  +    K    D    L + M + G+  ++ T+S LI+
Sbjct: 679  AVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILIN 738

Query: 209  C-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
            C  R + LP  A+    +M   G +P+ +T SS+++ Y  +  +  A  L D+     ++
Sbjct: 739  CFCRRSQLP-LALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQ 797

Query: 268  IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
             +   F+TLI            + + + M A G +P+++TY  +++ + +         +
Sbjct: 798  PNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNL 857

Query: 328  YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
              +M    L P    Y +++    + ++ +D L++++EM+ KG++ +V  Y++L++   +
Sbjct: 858  LNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCN 917

Query: 388  VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
             G   +A  +  DM       PD +TFS++I      GK+ EAE +++EM++   +P++ 
Sbjct: 918  YGRWSDASRLLSDM-IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIV 976

Query: 448  VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              +SLI  +    R D+  +    +      PD
Sbjct: 977  TYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 1009



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 149/348 (42%), Gaps = 36/348 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N+ +  F  C  +  A  +   ML  G +PD VT  +L++     N  + AV   ++M 
Sbjct: 226 FNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV 285

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y+++ID+  +   V  AF  +     +  R +   ++ L+     +  + 
Sbjct: 286 EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS 345

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS-- 345
               +  +M    + PN+ITY+ LLD   +  +  + K +++EM    + P+  TY+S  
Sbjct: 346 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLI 405

Query: 346 ---------------------------------LLRAYGRARYGEDTLSVYREMKEKGMQ 372
                                            L+  + +A+  ED + ++REM ++G+ 
Sbjct: 406 NGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLV 465

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +   YNTL+      G  D+A E F  M       PD WT++ ++      G++ +A  
Sbjct: 466 SNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFF-GISPDIWTYNILLGGLCDNGELEKALV 524

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +F +M +   + ++   T++I+   K  + ++       L   G+ PD
Sbjct: 525 IFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPD 572



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 180/382 (47%), Gaps = 21/382 (5%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  +    K + ++ A   F ++  +G++P+ VT++ L++    ++  + A    
Sbjct: 292 DIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLL 351

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M      P+ +TYS+++DA+ + G V  A  L++     +  IDP+   +S+LI    
Sbjct: 352 SDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM--VRMSIDPDIVTYSSLINGLC 409

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                D    +++ M + G   ++++YN L++   +AKR      +++EM+  GL  N  
Sbjct: 410 LHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTV 469

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +L++ + +A   +     + +M   G+   +  YN LL    D G  ++A  IFEDM
Sbjct: 470 TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM 529

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           +  E    D  T++++I      GKV EA ++F  +   G +P++   T+++        
Sbjct: 530 QKRE-MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGL 588

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL-GKLVECVEKSNSKLGYVVKLL 520
             +V     ++ + G+  +D    C L+    T   EL  K++ C        GY   LL
Sbjct: 589 LHEVEALYTKMKQEGLMKND----CTLSDGDITLSAELIKKMLSC--------GYAPSLL 636

Query: 521 LEEQDIEGDFKKEATELFNSIS 542
              +DI+    K+A  L  + S
Sbjct: 637 ---KDIKSGVCKKALSLLRAFS 655



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 140/290 (48%), Gaps = 9/290 (3%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K K +  VI Y+  +  F K   + +A+ LF++M+   + PD VT+S+LI+   +++  +
Sbjct: 356 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRID 415

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +A + F+ M S GC  D ++Y+++I+ + +A  VE    L+          +   ++TLI
Sbjct: 416 EANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLI 475

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           + +  AG+ D     + +M   G+ P++ TYN LL  +       +   I+++M    + 
Sbjct: 476 QGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMD 535

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
            +  TY +++R   +    E+  S++  +  KG++  +  Y T+++     G   E   +
Sbjct: 536 LDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEAL 595

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           +  MK  E    +  T S         G ++ +  +  +ML  G+ P+L 
Sbjct: 596 YTKMK-QEGLMKNDCTLSD--------GDITLSAELIKKMLSCGYAPSLL 636



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 155/333 (46%), Gaps = 5/333 (1%)

Query: 151 ALTYFTNKLKASK--EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+  F++ +K+     ++ +N  +    K +  D    L   M   G++ D  TF+ +I+
Sbjct: 172 AIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVIN 231

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           C       + A+    +M   G +PD +T  S+++ + R   V  A  L D+     ++ 
Sbjct: 232 CFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKP 291

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D  A++ +I         +   + ++E++  G++PN++TY  L++ +  + R      + 
Sbjct: 292 DIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLL 351

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            +M    ++PN  TY++LL A+ +     +   ++ EM    +   +  Y++L+      
Sbjct: 352 SDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLH 411

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
              DEA ++F D+  S+ C  D  +++++I   C  + +V +   +F EM + G   N  
Sbjct: 412 DRIDEANQMF-DLMVSKGCLADVVSYNTLINGFCKAK-RVEDGMKLFREMSQRGLVSNTV 469

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              +LIQ + +A   D      +++   GI+PD
Sbjct: 470 TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 502



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 137/300 (45%), Gaps = 1/300 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           L+ A  LF DM+     P  V F+ L+S        +  +   ++M   G   D  T++ 
Sbjct: 169 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 228

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I+ +     V +A  +  +     +  D     +L+  +         +++ ++M  IG
Sbjct: 229 VINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 288

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
            KP+++ YN ++D++ + KR       +KE+   G+ PN  TY +L+     +    D  
Sbjct: 289 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAA 348

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            +  +M +K +  +V  Y+ LL      G   EA E+FE+M    +  PD  T+SS+I  
Sbjct: 349 RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM-VRMSIDPDIVTYSSLING 407

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
                ++ EA  MF+ M+  G   ++    +LI  + KA+R +D ++    + + G+  +
Sbjct: 408 LCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSN 467



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/300 (21%), Positives = 143/300 (47%), Gaps = 3/300 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           LD A  LF +M+     P  + FS L+S  A+MN   +  +   E+M + G   +  TYS
Sbjct: 676 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKF-DVVISLGEQMQNLGIPHNHYTYS 734

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +I+ + R   + +A  +  +     +  +    S+L+  Y  +      + + ++M   
Sbjct: 735 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 794

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G +PN +T+N L+  +    +  +   +   M   G  P+  TY  ++    +    +  
Sbjct: 795 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 854

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
            ++  +M++  ++  V +YNT++       + D+A  +F++M+ ++  +P+  T+SS+I+
Sbjct: 855 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEME-TKGIRPNVVTYSSLIS 913

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                G+ S+A  + ++M+E    P++F  ++LI  + K  +  +  +  + + +  I P
Sbjct: 914 CLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 973



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 114/232 (49%), Gaps = 1/232 (0%)

Query: 164  EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
            +V+ YN  +K F K + +++   +F +M  RG+  + VT++ LI         + A E F
Sbjct: 1009 DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIF 1068

Query: 224  ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            + M S G  P+ +TY++++D   + G +E A  +++  +  K       ++ +I+    A
Sbjct: 1069 KEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 1128

Query: 284  GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            G  +   +++  +   GVKP+++ YN ++    R     +   ++KEM ++G  PN   Y
Sbjct: 1129 GKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCY 1188

Query: 344  ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
             +L+RA  R    E +  + +EM+  G     +    +  M  D G  D++F
Sbjct: 1189 NTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD-GRLDKSF 1239


>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g31840
 gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 840

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 166/353 (47%), Gaps = 36/353 (10%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           ++ A RL   +LD G  P+ VTF TLI+        ++A + F+ M   G +PD + YS+
Sbjct: 267 IEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYST 326

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +ID Y +AG + M   L+ +A ++  ++D   FS+ I +Y  +G+      VY+ M   G
Sbjct: 327 LIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQG 386

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           + PN++TY  L+  + +  R ++   +Y ++   G+ P+  TY+SL+  + +        
Sbjct: 387 ISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGF 446

Query: 361 SVYREMKEKG-----------------------------------MQLSVTLYNTLLAMC 385
           ++Y +M + G                                   ++L+V ++N+L+   
Sbjct: 447 ALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGW 506

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
             +   DEA ++F  M      +PD  TF++++ +    G++ EA  +F  M + G EP+
Sbjct: 507 CRLNRFDEALKVFRLM-GIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPD 565

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
                +LI  + K  +    ++  + +    I+ D   C  +++++ +  + E
Sbjct: 566 ALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIE 618



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 164/371 (44%), Gaps = 38/371 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V++++ T+ V+ K  DL  A  ++  ML +G+ P+ VT++ LI     +    +A   +
Sbjct: 355 DVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMY 414

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD------------------------ 259
            ++   G +P  +TYSS+ID + + GN+   F LY+                        
Sbjct: 415 GQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQ 474

Query: 260 -----------RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
                      +   +  R++   F++LI  +     FD  L V+  M   G+KP++ T+
Sbjct: 475 GLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATF 534

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
             ++       R  +   ++  M   GL P+   Y +L+ A+ +       L ++  M+ 
Sbjct: 535 TTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQR 594

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKV 427
             +   + + N ++ +       ++A + F ++   +  +PD  T+++MI   CS R ++
Sbjct: 595 NKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGK-MEPDIVTYNTMICGYCSLR-RL 652

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
            EAE +F  +    F PN   LT LI    K    D  +R  + + E G  P+    GCL
Sbjct: 653 DEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCL 712

Query: 488 LNVMTQTPKEE 498
           ++  +++   E
Sbjct: 713 MDWFSKSVDIE 723



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 147/317 (46%), Gaps = 1/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+++N  +  + +    D+A ++F  M   G+KPD  TF+T++  + M     +A+  F 
Sbjct: 496 VVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFF 555

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           RM   G +PDAL Y ++IDA+ +     +   L+D  +  K   D    + +I L     
Sbjct: 556 RMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCH 615

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +     +  +    ++P+++TYN ++      +R  + + I++ +      PN  T  
Sbjct: 616 RIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLT 675

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L+    +    +  + ++  M EKG + +   Y  L+   +     + +F++FE+M+  
Sbjct: 676 ILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQ-E 734

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +   P   ++S +I     RG+V EA  +F++ ++A   P++     LI+ Y K  R  +
Sbjct: 735 KGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVE 794

Query: 465 VVRALNRLPELGITPDD 481
                  +   G+ PDD
Sbjct: 795 AALLYEHMLRNGVKPDD 811



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 138/318 (43%), Gaps = 3/318 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEW 222
           ++I Y+  +  + K   L    +LF   L +GVK D V FS+ I    +  +L   +V +
Sbjct: 320 DLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVY 379

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            +RM   G  P+ +TY+ +I    + G +  AFG+Y +            +S+LI  +  
Sbjct: 380 -KRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCK 438

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            GN      +YE+M  +G  P+++ Y  L+D + +            +M    +  N   
Sbjct: 439 CGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVV 498

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           + SL+  + R    ++ L V+R M   G++  V  + T++ +    G  +EA  +F  M 
Sbjct: 499 FNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRM- 557

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
                +PD+  + ++I       K +    +F+ M       ++ V   +I    K  R 
Sbjct: 558 FKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRI 617

Query: 463 DDVVRALNRLPELGITPD 480
           +D  +  N L E  + PD
Sbjct: 618 EDASKFFNNLIEGKMEPD 635



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 37/224 (16%)

Query: 151 ALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A  +F N ++   E  ++ YN  +  +   R LD+AER+F+ +      P+ VT + LI 
Sbjct: 620 ASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIH 679

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               NN  + A+  F  M   G  P+A+TY  ++D + ++ ++E +F L           
Sbjct: 680 VLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKL----------- 728

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
                                   +EEM+  G+ P++++Y+ ++D + +  R  +   I+
Sbjct: 729 ------------------------FEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIF 764

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
            +  D  L P+   YA L+R Y +     +   +Y  M   G++
Sbjct: 765 HQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVK 808



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 130/304 (42%), Gaps = 16/304 (5%)

Query: 117 DDVFSVLRCLGDDFLEQDC-----VIILNNMTNPDTAALALTYFTNKLKASKEVILYNVT 171
           D+   V R +G   ++ D      V+ ++ M      AL L +   K+    + + Y   
Sbjct: 513 DEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTL 572

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPD----NVTFSTLISCARMNNLPNKAVEWFERMP 227
           +  F K        +LFD M    +  D    NV    L  C R+ +    A ++F  + 
Sbjct: 573 IDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIED----ASKFFNNLI 628

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
               +PD +TY++MI  Y     ++ A  +++  +   +  +    + LI +     + D
Sbjct: 629 EGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMD 688

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
           G + ++  M   G KPN +TY  L+D   ++        +++EM + G+SP+  +Y+ ++
Sbjct: 689 GAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIII 748

Query: 348 RAY-GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
                R R  E T +++ +  +  +   V  Y  L+     VG   EA  ++E M  +  
Sbjct: 749 DGLCKRGRVDEAT-NIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRN-G 806

Query: 407 CQPD 410
            +PD
Sbjct: 807 VKPD 810


>gi|414879860|tpg|DAA56991.1| TPA: hypothetical protein ZEAMMB73_837882 [Zea mays]
          Length = 677

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/494 (23%), Positives = 215/494 (43%), Gaps = 54/494 (10%)

Query: 78  IWVNPKSPR----------ASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVL---- 123
           +W+NP  P           A++L+++ +D R   +  L   L S + T  D+ +VL    
Sbjct: 47  VWLNPNLPSSHPLHQRHKSAAELQQRQHDDRTIDVPALVTAL-SAARTAPDLAAVLATHR 105

Query: 124 ----RCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR 179
               R LG          +L+ + +P      L      L A   +I YN+ ++   +  
Sbjct: 106 PVSARLLG---------ALLSRLPDPRRGVALLDLLAPDLPAPTLLIPYNLLLRSACRAG 156

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           +L  A  L  +M +RGV PD  ++STL++        + A+ +   M      PD + +S
Sbjct: 157 ELRLASGLLLEMRERGVTPDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLILFS 216

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF-DGCLNVYEEMKA 298
           ++I    R G+   A  L+ R R    R D  A++  +  Y  +    D    +  +M A
Sbjct: 217 NLIHLALRGGDAPKALALFSRLRAAGIRPDLKAYNAAVAAYCKSDLLRDAKRMLLHDMPA 276

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGE 357
            GV P+  TY+ +L  + R  R     +++  M     + P+ + +  +L AYG+     
Sbjct: 277 DGVAPDAETYSPILAALARRGRHLAAVSLFSHMRAVARVKPDISVFNIILNAYGQLDLAR 336

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN--------CQP 409
           +   ++  M+  G+  SV  YNT+L +  D G   EA  +F+ M+S+ +         +P
Sbjct: 337 EADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFDLMRSTSDGNGGAGSSVKP 396

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           +  T+++MITI     +  +A  +  EM   G +P+    ++++  + KA + D   R  
Sbjct: 397 NVVTYNTMITIYGKSLEDEKAGRLVQEMQAIGVQPDAITYSTILSIWVKAGKLDRAARLF 456

Query: 470 NRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 529
            +L E G   D         V+ QT       +V   E++   +    +LL + +D EG 
Sbjct: 457 EKLREAGTEIDP--------VLYQT-------MVVAYERAG-LVSQAKRLLRDLKDPEGI 500

Query: 530 FKKEATELFNSISK 543
            K+ A ++  S  +
Sbjct: 501 PKETAIKILASAGR 514



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 177/390 (45%), Gaps = 23/390 (5%)

Query: 117 DDVFSVLRCLGDDFLEQDCVI---ILNNMTNPDTAALALTYFTNKLKAS---KEVILYNV 170
           D   + L  + DD +  D ++   +++       A  AL  F+ +L+A+    ++  YN 
Sbjct: 194 DHALTFLPLMEDDAVAPDLILFSNLIHLALRGGDAPKALALFS-RLRAAGIRPDLKAYNA 252

Query: 171 TMKVFRKCRDLDKAER-LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
            +  + K   L  A+R L  DM   GV PD  T+S +++          AV  F  M + 
Sbjct: 253 AVAAYCKSDLLRDAKRMLLHDMPADGVAPDAETYSPILAALARRGRHLAAVSLFSHMRAV 312

Query: 230 G-CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
               PD   ++ +++AYG+      A  L+   R          ++T++++YG AG F  
Sbjct: 313 ARVKPDISVFNIILNAYGQLDLAREADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGE 372

Query: 289 CLNVYEEMKAIG---------VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
            +++++ M++           VKPN++TYN ++   G++    +   + +EM   G+ P+
Sbjct: 373 AVHLFDLMRSTSDGNGGAGSSVKPNVVTYNTMITIYGKSLEDEKAGRLVQEMQAIGVQPD 432

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY+++L  + +A   +    ++ +++E G ++   LY T++      G   +A  +  
Sbjct: 433 AITYSTILSIWVKAGKLDRAARLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQAKRLLR 492

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           D+K  E    ++      I I +  G++ EA  +F   +  G   +  V  +++  Y K 
Sbjct: 493 DLKDPEGIPKET-----AIKILASAGRLEEAAWLFRRAVNTGEIKDSSVHRAMMDLYAKN 547

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           +R  +V+   + + +LG  PD       +N
Sbjct: 548 RRHRNVIEVFDEMRKLGQLPDSEIIATAMN 577



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 134/312 (42%), Gaps = 16/312 (5%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDM--- 191
           IILN     D A  A   F +  +A     V+ YN  ++V+       +A  LFD M   
Sbjct: 324 IILNAYGQLDLAREADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFDLMRST 383

Query: 192 ------LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
                     VKP+ VT++T+I+    +    KA    + M + G  PDA+TYS+++  +
Sbjct: 384 SDGNGGAGSSVKPNVVTYNTMITIYGKSLEDEKAGRLVQEMQAIGVQPDAITYSTILSIW 443

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
            +AG ++ A  L+++ R     IDP  + T++  Y  AG       +  ++K     P  
Sbjct: 444 VKAGKLDRAARLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQAKRLLRDLK----DPEG 499

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           I     +  +  A R  +   +++   + G   + + + +++  Y + R   + + V+ E
Sbjct: 500 IPKETAIKILASAGRLEEAAWLFRRAVNTGEIKDSSVHRAMMDLYAKNRRHRNVIEVFDE 559

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M++ G      +  T +     +   D+A  +++ M+ +     D   F  MI++   + 
Sbjct: 560 MRKLGQLPDSEIIATAMNAYGKLKEFDKAAALYQAMREAGCVFSDRVHF-QMISLLGAQK 618

Query: 426 KVSEAEAMFNEM 437
                E +  E+
Sbjct: 619 DFKALEVLVGEL 630


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 161/338 (47%), Gaps = 2/338 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + ++V  +    D+A ++   M D G KPD VT + +I         + A + F +M 
Sbjct: 251 YTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMK 310

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           +    PD +TY +++D  G +G+ +    +++    + +  +  +++ ++      G  D
Sbjct: 311 ASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLD 370

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L V++EMK  G+ P   +YN+L+    +A    +   ++  M   G SPN  T+   +
Sbjct: 371 EALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFI 430

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YG++      +  Y  MK KG+   V   N +L+  A  G    A  +F ++K     
Sbjct: 431 NYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDM-GV 489

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD+ T++ MI  CS   K  EA   F++M+E G  P++  L SLI    K  + ++  +
Sbjct: 490 SPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWK 549

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 504
             ++L E+ I P +     LL+ + +  K +E+  L+E
Sbjct: 550 LFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLE 587



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 178/381 (46%), Gaps = 15/381 (3%)

Query: 99   YNSLVKLAADLDSCSATEDDVFSVLRCLG---DDFLEQDCVIILNNMTNPDTAALALTYF 155
            YNSL++   D +     ED +F+ ++ LG   D+F      +IL+ M         L   
Sbjct: 776  YNSLIRGLVDENLIDIAED-LFTEMKRLGCGPDEFTYN---LILDAMGKSMRIEEMLRVQ 831

Query: 156  TNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
                +   E   + YN  +    K + L++A  L+ +++  G  P   T+  L+      
Sbjct: 832  AEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKA 891

Query: 214  NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
                 A   F  M  +GC P+   Y+ +++ +  AGN E    ++++   +    D  ++
Sbjct: 892  GKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSY 951

Query: 274  STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
            + LI    TAG  +  L+ + ++  +G++P++I YN L+D +G+++R  +   ++ EM  
Sbjct: 952  TVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKK 1011

Query: 334  NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
             G+ PN  TY SL+   G+A    +   +Y E+  KG + +V  YN L+   +  G TD 
Sbjct: 1012 KGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGSTDN 1071

Query: 394  AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
            A+  ++ +    + +      +++I+       ++ AE +F EM   G  P+ F    ++
Sbjct: 1072 AYAAYDCVAVGVSLK------TALISGLVDENLINIAEGLFAEMKRRGCGPDQFTYNLIL 1125

Query: 454  QCYGKAQRTDDVVRALNRLPE 474
               GK+ R +++++    + E
Sbjct: 1126 DAIGKSMRIEEMLKVQEEIAE 1146



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 147/316 (46%), Gaps = 36/316 (11%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ Y   +    +   LD+A  +FD+M ++G+ P+  ++++LIS     ++ ++A+E F 
Sbjct: 353 IVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFN 412

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M + G  P+  T+   I+ YG++G    A                              
Sbjct: 413 HMNACGPSPNGYTHVLFINYYGKSGQSLKA------------------------------ 442

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                +  YE MK+ G+ P++   N +L ++ R+ R    K ++ E+ D G+SP+  TY 
Sbjct: 443 -----IQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYT 497

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            +++   +A   ++ ++ + +M E G    V   N+L+      G  +EA+++F  +K  
Sbjct: 498 MMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEM 557

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +  +P + T++++++     GKV E   +  EM  +   PNL    +++ C  K    + 
Sbjct: 558 K-IEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNC 616

Query: 465 VVRALNRLPELGITPD 480
            +  L  + E G TPD
Sbjct: 617 AIGMLYSMTEKGCTPD 632



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 133/298 (44%), Gaps = 36/298 (12%)

Query: 183  KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
            +A +LF+     GV     ++++LI      NL + A + F  M   GC PD  TY+ ++
Sbjct: 756  EAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLIL 815

Query: 243  DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            DA G++  +E                                     L V  EM   G +
Sbjct: 816  DAMGKSMRIEEM-----------------------------------LRVQAEMHRKGYE 840

Query: 303  PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
               +TYN ++  + ++KR  Q   +Y  +   G SP   TY  LL    +A    D  ++
Sbjct: 841  STYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENL 900

Query: 363  YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
            + EM E G + + T+YN LL      G T+   +IFE M   +   PD  +++ +I    
Sbjct: 901  FNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKM-VEQGINPDIKSYTVLIDTLC 959

Query: 423  CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              G++++  + F ++LE G EP+L +   LI   GK++R ++ V   N + + GI P+
Sbjct: 960  TAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPN 1017



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 145/315 (46%), Gaps = 5/315 (1%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           M + G+  +  T++ LI     +    +A+E ++ M   G  P   TYS ++ ++G+  +
Sbjct: 169 MREAGMSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRD 228

Query: 251 VEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           V+    L +    E   + PN +S    I++ G A  FD    +  +M+  G KP+++T+
Sbjct: 229 VDTVLWLLNEM--EARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTH 286

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
             ++  +  A R    K ++ +M  +   P+  TY +LL   G +   +  + ++  M  
Sbjct: 287 TVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVA 346

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G   ++  Y  ++     VG  DEA  +F++MK  +   P+ ++++S+I+         
Sbjct: 347 DGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMK-EKGISPEQYSYNSLISGFLKADMFD 405

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
            A  +FN M   G  PN +     I  YGK+ ++   ++    +   GI PD      +L
Sbjct: 406 RALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVL 465

Query: 489 NVMTQTPKEELGKLV 503
           + + ++ +  + K V
Sbjct: 466 SSLARSGRLGMAKRV 480



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 141/315 (44%), Gaps = 1/315 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V   N  +    +   L  A+R+F ++ D GV PD +T++ +I C    +  ++A+ +F
Sbjct: 457 DVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFF 516

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   GC PD L  +S+ID   + G    A+ L+ + +  K       ++TL+   G  
Sbjct: 517 SDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGRE 576

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     +++ EEM      PN+ITYN +LD + +         +   MT+ G +P+ ++Y
Sbjct: 577 GKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSY 636

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +++    +    E+   ++ +MK+       TL  T+L      G   EA    ++   
Sbjct: 637 NTVMYGLIKEERFEEAFRMFCQMKKILAPDYATLC-TILPSFVKNGLMKEALHTVKEYIL 695

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
             +C  D  +F S++     +  V ++      +   G   N F L  LI+   K ++  
Sbjct: 696 KADCNTDKSSFHSLMEGILNKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKAL 755

Query: 464 DVVRALNRLPELGIT 478
           +  +  N+   LG++
Sbjct: 756 EAHQLFNKFKGLGVS 770



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 175/402 (43%), Gaps = 14/402 (3%)

Query: 149  ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
            A+ + Y   +   + ++  YN  M    K    ++A R+F  M  + + PD  T  T++ 
Sbjct: 617  AIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQM-KKILAPDYATLCTILP 675

Query: 209  CARMNNLPNKAVEWF-ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                N L  +A+    E +    C+ D  ++ S+++       VE +    +   +    
Sbjct: 676  SFVKNGLMKEALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVEKSIEFAENIASRGIL 735

Query: 268  IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            ++      LI+             ++ + K +GV     +YN+L+  +         + +
Sbjct: 736  LNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDL 795

Query: 328  YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            + EM   G  P+  TY  +L A G++   E+ L V  EM  KG + +   YNT+++    
Sbjct: 796  FTEMKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVK 855

Query: 388  VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
                ++A +++ ++ S E   P   T+  ++      GK+ +AE +FNEMLE G +PN  
Sbjct: 856  SKRLEQAIDLYYNLMS-EGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCT 914

Query: 448  VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKLVEC 505
            +   L+  +  A  T++V +   ++ E GI PD +    L++ +    +  + L    + 
Sbjct: 915  IYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQL 974

Query: 506  VEKSNSKLGYVVKLLLEEQDIEGDFKKEATE----LFNSISK 543
            +E     LG    L++    I+G  K E  E    LFN + K
Sbjct: 975  LE-----LGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKK 1011



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 153/333 (45%), Gaps = 11/333 (3%)

Query: 216 PNKAVEWF---ERMPSFGCDPDALTYS-SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
           P +A+E F    R P+     ++  Y   ++ A+GR G++   F   D  + +  + +  
Sbjct: 88  PAEALELFTAAARQPTAVHTTESCNYMLELMRAHGRVGDMAQVF---DLMQKQIVKANVG 144

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
            F+T+    G  G           M+  G+  N  TYN L+  + ++    +   +YK M
Sbjct: 145 TFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFLVKSGFDAEAMEVYKAM 204

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
            ++G+SP+  TY+ L+ ++G+ R  +  L +  EM+ +G++ +V  Y   + +       
Sbjct: 205 VEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARF 264

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           DEA++I   M+ S  C+PD  T + +I +    G++S+A+ +F +M  +  +P+     +
Sbjct: 265 DEAYQILGKMEDS-GCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYIT 323

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKLVECVEKS 509
           L+   G +  +  V+   N +   G   +      +++ + Q  +  E L    E  EK 
Sbjct: 324 LLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKG 383

Query: 510 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 542
            S   Y    L+    ++ D    A ELFN ++
Sbjct: 384 ISPEQYSYNSLI-SGFLKADMFDRALELFNHMN 415



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 17/191 (8%)

Query: 151  ALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
             L+YF   L+   E  +I+YN+ +    K   +++A  LF++M  +G+ P+  T+++LI 
Sbjct: 967  GLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLIL 1026

Query: 209  CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    ++A + +E +   G  P+  TY+++I  Y  +G+ + A+  YD         
Sbjct: 1027 HLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNAYAAYDCV------- 1079

Query: 269  DPNAFSTLIKLYGTAGNFDGCL-----NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
               A    +K    +G  D  L      ++ EMK  G  P+  TYN +LD +G++ R  +
Sbjct: 1080 ---AVGVSLKTALISGLVDENLINIAEGLFAEMKRRGCGPDQFTYNLILDAIGKSMRIEE 1136

Query: 324  VKTIYKEMTDN 334
            +  + +E+ ++
Sbjct: 1137 MLKVQEEIAED 1147


>gi|12321310|gb|AAG50731.1|AC079041_24 PPR-repeat protein, putative [Arabidopsis thaliana]
          Length = 690

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 166/353 (47%), Gaps = 36/353 (10%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           ++ A RL   +LD G  P+ VTF TLI+        ++A + F+ M   G +PD + YS+
Sbjct: 267 IEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYST 326

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +ID Y +AG + M   L+ +A ++  ++D   FS+ I +Y  +G+      VY+ M   G
Sbjct: 327 LIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQG 386

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           + PN++TY  L+  + +  R ++   +Y ++   G+ P+  TY+SL+  + +        
Sbjct: 387 ISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGF 446

Query: 361 SVYREMKEKG-----------------------------------MQLSVTLYNTLLAMC 385
           ++Y +M + G                                   ++L+V ++N+L+   
Sbjct: 447 ALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGW 506

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
             +   DEA ++F  M      +PD  TF++++ +    G++ EA  +F  M + G EP+
Sbjct: 507 CRLNRFDEALKVFRLM-GIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPD 565

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
                +LI  + K  +    ++  + +    I+ D   C  +++++ +  + E
Sbjct: 566 ALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIE 618



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 154/332 (46%), Gaps = 3/332 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V++++ T+ V+ K  DL  A  ++  ML +G+ P+ VT++ LI     +    +A   +
Sbjct: 355 DVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMY 414

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            ++   G +P  +TYSS+ID + + GN+   F LY+      +  D   +  L+      
Sbjct: 415 GQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQ 474

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     +    +M    ++ N++ +N+L+D   R  R  +   +++ M   G+ P+  T+
Sbjct: 475 GLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATF 534

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMK 402
            +++R        E+ L ++  M + G++     Y TL+ A C  +  T    ++F+ M+
Sbjct: 535 TTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPT-IGLQLFDLMQ 593

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            ++    D    + +I +     ++ +A   FN ++E   EP++    ++I  Y   +R 
Sbjct: 594 RNK-ISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRL 652

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           D+  R    L      P+      L++V+ + 
Sbjct: 653 DEAERIFELLKVTPFGPNTVTLTILIHVLCKI 684



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 138/318 (43%), Gaps = 3/318 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEW 222
           ++I Y+  +  + K   L    +LF   L +GVK D V FS+ I    +  +L   +V +
Sbjct: 320 DLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVY 379

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            +RM   G  P+ +TY+ +I    + G +  AFG+Y +            +S+LI  +  
Sbjct: 380 -KRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCK 438

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            GN      +YE+M  +G  P+++ Y  L+D + +            +M    +  N   
Sbjct: 439 CGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVV 498

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           + SL+  + R    ++ L V+R M   G++  V  + T++ +    G  +EA  +F  M 
Sbjct: 499 FNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRM- 557

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
                +PD+  + ++I       K +    +F+ M       ++ V   +I    K  R 
Sbjct: 558 FKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRI 617

Query: 463 DDVVRALNRLPELGITPD 480
           +D  +  N L E  + PD
Sbjct: 618 EDASKFFNNLIEGKMEPD 635



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 138/301 (45%), Gaps = 9/301 (2%)

Query: 162 SKEVILYNVTMKVFRKCRD--LDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNK 218
           S  V+ Y + +K    C+D  + +A  ++  +L RG++P  VT+S+LI    +  NL   
Sbjct: 388 SPNVVTYTILIKGL--CQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNL-RS 444

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
               +E M   G  PD + Y  ++D   + G +  A     +   +  R++   F++LI 
Sbjct: 445 GFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLID 504

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            +     FD  L V+  M   G+KP++ T+  ++       R  +   ++  M   GL P
Sbjct: 505 GWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEP 564

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +   Y +L+ A+ +       L ++  M+   +   + + N ++ +       ++A + F
Sbjct: 565 DALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFF 624

Query: 399 EDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            ++   +  +PD  T+++MI   CS R ++ EAE +F  +    F PN   LT LI    
Sbjct: 625 NNLIEGK-MEPDIVTYNTMICGYCSLR-RLDEAERIFELLKVTPFGPNTVTLTILIHVLC 682

Query: 458 K 458
           K
Sbjct: 683 K 683



 Score = 39.3 bits (90), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 49/96 (51%)

Query: 147 TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           T  L L     + K S ++ + NV + +  KC  ++ A + F+++++  ++PD VT++T+
Sbjct: 583 TIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTM 642

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           I         ++A   FE +      P+ +T + +I
Sbjct: 643 ICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILI 678


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 36/348 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +    K + LD AE LF  M++ GV  +N+T++++I C  +      A++  + M 
Sbjct: 291 YNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMI 350

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN------------------------ 263
                PD +TY+ +I A  +   +E A+G+  + R                         
Sbjct: 351 QNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPE 410

Query: 264 ---------EKWRIDPNAFSTLIKLYGTAG--NFDGCLNVYEEMKAIGVKPNMITYNNLL 312
                    E+  + PN ++  I  +G       D    ++ E  A G+KPN +TYN LL
Sbjct: 411 EALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLL 470

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           +   R  R  +   I KEM  N  +P+  TY +L++   +     D L ++ EM+ KG  
Sbjct: 471 NGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYD 530

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
           ++    N L    A VG   +A   +  MK        S  + + I   S  G++ EA+A
Sbjct: 531 VNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLA-IHCLSTAGEMEEAQA 589

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM+  G+ PNL    ++I+ + +  R DD    LN + E GI PD
Sbjct: 590 LLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPD 637



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 156/340 (45%), Gaps = 14/340 (4%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDL--DKAERLFDDMLD---RGVKPDNVTFSTLISCARM 212
           + KAS   ++      V + C+ +  D+ E L D+ L+   + + PD V     +     
Sbjct: 138 RAKASANALVVQQEDTVNKICKAIEEDQWECLQDNFLNSMAQDLNPDAVVKVLNLQTDAQ 197

Query: 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
           N L  +  +W ++   +  + DA  Y +MID  GRA        L  + + +   I  + 
Sbjct: 198 NAL--RFFQWADKQEGYDHNTDA--YFTMIDILGRAKMFTELQSLLQKMQTQGREITRSM 253

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI--TYNNLLDTMGRAKRPWQVKTIYKE 330
             + +  YG +G F   L  +  MK +G +P +I   YN++L ++ + K+    + ++ +
Sbjct: 254 LHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQ 313

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           M +NG+S N  TY S+++ +      ED + +  +M +      V  Y  +++       
Sbjct: 314 MINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKM 373

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
            ++A+ + + M+ +  C+P+ +T++++I  +C+ R +  EA  +   M + G  PN++  
Sbjct: 374 IEQAYGVLQKMREN-GCEPNIYTYNALIQGLCAVR-RPEEALELVTLMEQGGVPPNIYTY 431

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           T L     K +R D      N     G+ P+      LLN
Sbjct: 432 TILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLN 471



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 104/262 (39%), Gaps = 37/262 (14%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKP---------- 198
           AL L     +      +  Y +      K R LD+A+ +F++ L RG+KP          
Sbjct: 412 ALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLN 471

Query: 199 -------------------------DNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCD 232
                                    D+VT++TLI    + N LP+ A+   + M + G D
Sbjct: 472 GYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPD-ALRMHDEMENKGYD 530

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
            +  T + +     R GN + A   Y R ++  +    + +   I    TAG  +    +
Sbjct: 531 VNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQAL 590

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
             EM   G  PN+ TYN ++    R  R      +   M +NG+ P+  +Y  L++ +  
Sbjct: 591 LYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHN 650

Query: 353 ARYGEDTLSVYREMKEKGMQLS 374
               +D   +Y    E+G+ L+
Sbjct: 651 QGRTQDADQLYATALERGVVLN 672


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 168/370 (45%), Gaps = 41/370 (11%)

Query: 151 ALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI- 207
           A+T F   +  +   +V+ Y   +    K R + +A  LF++   +G  P  VT++T+I 
Sbjct: 14  AITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMID 73

Query: 208 ---SCARMNNL--------------------------------PNKAVEWFERMPSFGCD 232
               C R+ N                                  +K  +  E M   GC 
Sbjct: 74  GLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCA 133

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           P+A+TY+++++A    G  + AF L ++        +   F  +IK     G  +    V
Sbjct: 134 PNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRV 193

Query: 293 YEEMKAI--GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            +EM  I  G+ P++IT+N++LD + + +R      ++K   + G  PN  TY++L+   
Sbjct: 194 VDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGL 253

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
            +    ++ L +  +M E G + +   Y+T++     VG  ++A  +   M+ +  C PD
Sbjct: 254 SKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDA-GCLPD 312

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
           + T++++I     R ++ EA  +  EMLEAGF P++   T+L     ++ R D+ V  L+
Sbjct: 313 AVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILD 372

Query: 471 RLPELGITPD 480
            +   G  P+
Sbjct: 373 YMAARGCAPN 382



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 151/343 (44%), Gaps = 41/343 (11%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           CRD  +DK  +L ++M  RG  P+ VT++TL++         +A    E+M + GC P+ 
Sbjct: 112 CRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPEL 171

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYD------------------------------------ 259
           +T+  +I    + G +E AF + D                                    
Sbjct: 172 ITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVF 231

Query: 260 -RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
            RA     R +   +STLI         D  L +  +M  +G + N +TY+ ++D + + 
Sbjct: 232 KRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKV 291

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
            R      + ++M D G  P+  TY +L+  + + +   + + + REM E G   SV  Y
Sbjct: 292 GRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTY 351

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
            TL       G  DEA EI + M ++  C P++ T+SS++      G+V+EA   F +M 
Sbjct: 352 TTLCHGLCRSGRFDEAVEILDYM-AARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMA 410

Query: 439 -EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +    P++   ++LI    KA + D+    L R+   G  PD
Sbjct: 411 RDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPD 453



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 157/337 (46%), Gaps = 8/337 (2%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K R +DKA  LF  M+D+ + PD VT+  LI          +A + FE   + GC P  +
Sbjct: 7   KSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVV 66

Query: 237 TYSSMIDAYGRAGNVEMAFGLY-DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           TY++MID   + G +E A  LY D A +  +R     +STLI         D    + EE
Sbjct: 67  TYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEE 126

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M   G  PN +TYN L++ +    R  +  ++ ++M  NG  P   T+  +++   +   
Sbjct: 127 MAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGE 186

Query: 356 GEDTLSVYRE--MKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
            E    V  E  M E G+   V  +N++L  +C +    D A  +F+       C+P+  
Sbjct: 187 IEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILD-AHNVFK-RALERGCRPNVV 244

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T+S++I   S   K+ EA  +  +M+E G   N    ++++    K  R +D V  L ++
Sbjct: 245 TYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQM 304

Query: 473 PELGITPDDRFCGCLLN--VMTQTPKEELGKLVECVE 507
            + G  PD      L++     Q  +E +G L E +E
Sbjct: 305 RDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLE 341



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 147/331 (44%), Gaps = 10/331 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDM--LDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           E+I + + +K   K  +++ A R+ D+M  ++ G+ PD +TF++++           A  
Sbjct: 170 ELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHN 229

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F+R    GC P+ +TYS++ID   +   ++ A  L  +      R +   +ST++    
Sbjct: 230 VFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLL 289

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G  +  + V  +M+  G  P+ +TYN L+D   + +R  +   + +EM + G  P+  
Sbjct: 290 KVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVV 349

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +L     R+   ++ + +   M  +G   +   Y++++      G   EA   FE M
Sbjct: 350 TYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKM 409

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
              E   P    +S++I      GK+ EA      M+ AG  P++   + LI     A R
Sbjct: 410 ARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGR 469

Query: 462 TDDVVRALNRLPELGITPD--------DRFC 484
            D  +     + E G  PD        DR C
Sbjct: 470 IDTGLELFRGMAERGCVPDMVTYATLVDRLC 500



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 161/349 (46%), Gaps = 2/349 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +VI +N  +    K + +  A  +F   L+RG +P+ VT+STLI         ++A++
Sbjct: 205 SPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQ 264

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
              +M   GC  + +TYS+++D   + G +E A  +  + R+     D   ++TLI  + 
Sbjct: 265 LLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFF 324

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                   + +  EM   G  P+++TY  L   + R+ R  +   I   M   G +PN  
Sbjct: 325 KRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAI 384

Query: 342 TYASLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
           TY+S++    +A    + L  + +M +++ +   V  Y+ L+      G  DEA+E  E 
Sbjct: 385 TYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLER 444

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M  +    PD  TFS +I      G++     +F  M E G  P++    +L+    +A 
Sbjct: 445 MIRAGRI-PDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRAS 503

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 509
           R D+      ++   G++PD      +++ + +  ++E  K ++  E S
Sbjct: 504 RVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQDEENS 552



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 131/303 (43%), Gaps = 44/303 (14%)

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           +KA+  F++M      PD +TY ++ID  G+   V+ A+                     
Sbjct: 12  DKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAY--------------------- 50

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-G 335
                         +++EE +A G  P ++TYN ++D + +  R     T+Y +M  + G
Sbjct: 51  --------------DLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFG 96

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
             P   TY++L+    R    +    +  EM  +G   +   YNTL+      G + EAF
Sbjct: 97  FRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAF 156

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE--MLEAGFEPNLFVLTSLI 453
            + E M ++  C P+  TF  +I      G++  A  + +E  M+E+G  P++    S++
Sbjct: 157 SLLEQM-AANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVL 215

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE-----LGKLVECVEK 508
               K QR  D      R  E G  P+      L++ +++  K +     L K+VE   +
Sbjct: 216 DGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCR 275

Query: 509 SNS 511
           +N+
Sbjct: 276 ANT 278



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 121/281 (43%), Gaps = 3/281 (1%)

Query: 139 LNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKP 198
           L+ M   D A L L     +L      + Y+  +    K   ++ A  +   M D G  P
Sbjct: 253 LSKMAKMDEA-LQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLP 311

Query: 199 DNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
           D VT++TLI          +AV     M   G  P  +TY+++     R+G  + A  + 
Sbjct: 312 DAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEIL 371

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGR 317
           D         +   +S+++     AG     L  +E+M +   V P++I Y+ L+D + +
Sbjct: 372 DYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCK 431

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
           A +  +     + M   G  P+  T++ L+     A   +  L ++R M E+G    +  
Sbjct: 432 AGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVT 491

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
           Y TL+         DEAF++F+ M+ S+   PD  T  +MI
Sbjct: 492 YATLVDRLCRASRVDEAFDLFQQMR-SDGLSPDRSTRRTMI 531



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 79/170 (46%)

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           ++D + ++++  +  T++K+M D  + P+  TY +L+   G+ R  ++   ++ E + KG
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
              +V  YNT++      G  + A  +++DM      +P   T+S++I       +V + 
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             +  EM   G  PN     +L+       R+ +    L ++   G  P+
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPE 170


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 147/306 (48%), Gaps = 17/306 (5%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y + +  F K   + +A    D+M+  G +P  VT++TLI         + A E F
Sbjct: 523 DVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELF 582

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK--------WRIDPNA--- 272
           E M + GC P+ +TY+++ID Y ++GN+E A  +Y R R +         ++I  N    
Sbjct: 583 ELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEK 642

Query: 273 -----FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                +  L+     A       ++ E M   G +PN I Y+ L+D   +A +  + + +
Sbjct: 643 PNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEV 702

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           + +M + G +PN  TY+SL+    + +  +  L V  +M E     ++ +Y  ++   + 
Sbjct: 703 FHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSK 762

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           V  TDEA+++   M   + C+P+  T+++MI      GKV +   +F EM   G  PN  
Sbjct: 763 VAKTDEAYKLML-MMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFV 821

Query: 448 VLTSLI 453
             T LI
Sbjct: 822 TYTVLI 827



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 104/460 (22%), Positives = 189/460 (41%), Gaps = 36/460 (7%)

Query: 142 MTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR----DLDKAERLFDDMLDRGVK 197
           +  P T  LA   +   L A    +L  V +  F +C       +KA ++  +M+  G  
Sbjct: 429 LPGPVTFELAEKAYNEMLSAG--TVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFV 486

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           PD  T+S +I      +    A   F+ M   G  PD  TY+ +ID + +AG ++ A   
Sbjct: 487 PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNW 546

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
            D    +        ++TLI  Y  A        ++E M A G  PN+ITY  L+D   +
Sbjct: 547 LDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCK 606

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
           +    +   IY  M  +   P+ + Y                  +   + EK    +V  
Sbjct: 607 SGNIEKACQIYARMRGDADIPDVDMY----------------FKIKNNVAEKP---NVVT 647

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           Y  L+          +A ++ E M   + C+P++  + ++I       K+ EA+ +F++M
Sbjct: 648 YGALVDGLCKAHKVKDARDLLETM-FVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKM 706

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK- 496
           +E G+ PN++  +SLI    K +R D V++ L+++ E    P+      +++ +++  K 
Sbjct: 707 VERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKT 766

Query: 497 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDL 556
           +E  KL+  +E+   K   V    + +   +     +  ELF  +          C  + 
Sbjct: 767 DEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSK------GCAPNF 820

Query: 557 CVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKS 596
                L+ + C    L    E Y  ++    T W  H+ S
Sbjct: 821 VTYTVLINHCCATGHLD---EAYALLEEMKQTYWPKHVSS 857



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 145/313 (46%), Gaps = 3/313 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y+  +  F K   LD+A+ +F  M++RG  P+  T+S+LI     +   +  ++   +
Sbjct: 681 IVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSK 740

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M    C P+ + Y+ MID   +    + A+ L      +  + +   ++ +I  +G AG 
Sbjct: 741 MLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGK 800

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D CL ++ EM + G  PN +TY  L++         +   + +EM       + ++Y  
Sbjct: 801 VDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCK 860

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS-S 404
           ++  Y R      +L +  E+++ G   ++ LY  L+      G  + A E+ +++ S S
Sbjct: 861 VIEGYKREFIL--SLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISAS 918

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            +       ++S+I   S   K+  A  +F +M+  G  P+L     L+    + +R ++
Sbjct: 919 MSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEE 978

Query: 465 VVRALNRLPELGI 477
            ++  + L ++ I
Sbjct: 979 ALQLSDSLCQMDI 991



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 113/248 (45%), Gaps = 9/248 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +++Y   +    K    D+A +L   M ++G KP+ VT++ +I         +K +E F 
Sbjct: 750 IVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFR 809

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M S GC P+ +TY+ +I+     G+++ A+ L +  +   W    +++  +I+  G   
Sbjct: 810 EMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIE--GYKR 867

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS--PNWNT 342
            F   L + EE++  G  P ++ Y  L+D   +A R      ++KE+    +S     N 
Sbjct: 868 EFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNL 927

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y SL+ ++  A   +    ++ +M   G+   +  +  LL     V   +EA ++     
Sbjct: 928 YTSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQL----- 982

Query: 403 SSENCQPD 410
           S   CQ D
Sbjct: 983 SDSLCQMD 990



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 111/533 (20%), Positives = 203/533 (38%), Gaps = 109/533 (20%)

Query: 53  SSNPTK-HSQNPQYPHGKTGSSPKSYIWVNPKSPRASKL-KEKSYDTRYNSLVK---LAA 107
           SSNP   +S +  + H  T S       V+P    +S   + + +  +  SL++   L +
Sbjct: 28  SSNPFPIYSHSSPFAHFSTSSPDDLPGLVDPDQSLSSDTSRVQCFSPQEVSLLRDSLLDS 87

Query: 108 DLDSCSA--------TEDDVFSVL---RCLGDDFLEQDCVII--LNNMTNPDTAALALTY 154
             DSCS+          ++ F +L   R   D F E+  +++       NPD     L++
Sbjct: 88  HADSCSSHRTLQTVKISNEAFLILDAIRNCDDGFGEKTHIVLRQFRQKLNPDLVVEILSF 147

Query: 155 FTNK-------LKASKEVILYNVTMKVFRKCRDL---DKAERLFDDMLDRGVKPDNVTFS 204
             +        L A ++ I Y+ T  V+    D+      +R+ ++ L      D     
Sbjct: 148 LKSPELCVKFFLWAGRQ-IGYDHTPAVYIALLDVFERGSYDRVPEEFLREIRGDDKEVLG 206

Query: 205 TLIS-----CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV-------- 251
            L++     C R N L N A+E   R+  FG  P  +TY++++  + RA  +        
Sbjct: 207 KLLNVLIRKCCR-NGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHR 265

Query: 252 ----------EMAFGLYDRA--RNEKWR----------IDPNA--FSTLIKLYGTAGNFD 287
                     E   G + +A  +  KWR            PN   ++ +I     A  F+
Sbjct: 266 EMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFE 325

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             ++    M++    PN+ TY  LL      K+  + K I   M   G  P++  + SL+
Sbjct: 326 EAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLV 385

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCA-------------------- 386
            AY ++        + ++M++   +    +YN L+ ++C+                    
Sbjct: 386 HAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEM 445

Query: 387 --------------------DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
                                 G  ++A+++  +M  +    PD+ T+S +I       +
Sbjct: 446 LSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGN-GFVPDTSTYSEVIGFLCNASR 504

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           V  A  +F EM   G  P+++  T LI C+ KA         L+ +   G  P
Sbjct: 505 VENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEP 557


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 158/328 (48%), Gaps = 2/328 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           + V +K F K   L    +LF+ MLD G+ PD + ++ LI         ++A   +E M 
Sbjct: 11  FRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMV 70

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S G +P   TY+S+++A+ +   ++ A  L+     + +  D   +ST+I      G   
Sbjct: 71  SVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVT 130

Query: 288 GCLN-VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
             L  ++ +M   G   N + YN L++ + + +   +   + +EM   G  P+  TY ++
Sbjct: 131 EALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTI 190

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L    R     +    +  M  +G    V  YN LL      G TDEA ++F+D+  ++ 
Sbjct: 191 LSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDV-IAKG 249

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             PD+ T++S++   + +  + EAE MF +M+ +G  PN    + ++  + +A++ DD  
Sbjct: 250 YMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAH 309

Query: 467 RALNRLPELGITPDDRFCGCLLNVMTQT 494
           + L  + ++G  PD      LL+ + +T
Sbjct: 310 KVLEEMSKIGAVPDVVTYNILLDGLCKT 337



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 153/318 (48%), Gaps = 2/318 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKA-ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
           +V+ Y+  +    K   + +A E LF  M++RG   + V ++ LI+    +    +A + 
Sbjct: 112 DVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKL 171

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            E M S G  PD +TY++++    R G V  A   +D   +  +  D  A++ L+     
Sbjct: 172 LEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYK 231

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G  D  + +++++ A G  P+ +TYN++L  + R     + + ++K+M  +G +PN  T
Sbjct: 232 EGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGAT 291

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y+ +L  + RA+  +D   V  EM + G    V  YN LL         D+A E+F  M 
Sbjct: 292 YSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMV 351

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            +  C PD  ++S ++       KV +A  +F+ M+E    P++     L+    KA + 
Sbjct: 352 DN-GCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKL 410

Query: 463 DDVVRALNRLPELGITPD 480
           D+    L+++   G  PD
Sbjct: 411 DEAKDLLDQMTCSGCAPD 428



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 160/337 (47%), Gaps = 4/337 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + I YN+ +  + K   +D+A RL+++M+  G++P   T+++L++         +A+E
Sbjct: 40  SPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAME 99

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG-LYDRARNEKWRIDPNAFSTLIKLY 280
            F+ M   G +PD +TYS++I    + G V  A   L+ +        +  A++ LI   
Sbjct: 100 LFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGL 159

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
               N +    + EEM + G  P+ ITYN +L  + R  +  + K  +  M   G SP+ 
Sbjct: 160 CKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDV 219

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
             Y  LL A  +    ++ + +++++  KG       YN++L   A     DEA E+F+ 
Sbjct: 220 VAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKK 279

Query: 401 MKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           M +S  C P+  T+S +++   CR  KV +A  +  EM + G  P++     L+    K 
Sbjct: 280 MVAS-GCAPNGATYSIVLS-GHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKT 337

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
              D      + + + G  PD      +LN + +T K
Sbjct: 338 NLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNK 374



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 145/322 (45%), Gaps = 38/322 (11%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAV 220
           S   + YN  +    K  ++++A +L ++M  +G  PDN+T++T++S   RM  + ++A 
Sbjct: 146 SANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKV-SEAK 204

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID----------- 269
           ++F+ MPS G  PD + Y+ ++DA  + G  + A  L+     + +  D           
Sbjct: 205 QFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGL 264

Query: 270 ----------------------PNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNM 305
                                 PN  +  I L G   A   D    V EEM  IG  P++
Sbjct: 265 ARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDV 324

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           +TYN LLD + +     +   ++  M DNG +P+  +Y+ +L    +     D   ++  
Sbjct: 325 VTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDR 384

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M E+ +   V  +N L+      G  DEA ++ + M  S  C PD   +++++     +G
Sbjct: 385 MIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCS-GCAPDYVAYNTLMNGLRKQG 443

Query: 426 KVSEAEAMFNEMLEAGFEPNLF 447
           +  +A+ +   M E GF  + F
Sbjct: 444 RHIQADRLTQAMKEKGFLSDCF 465



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 130/252 (51%), Gaps = 4/252 (1%)

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           C P+  T+  ++ ++ + G +   + L+++  +     D   ++ LI  Y   G  D   
Sbjct: 4   CSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN 63

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            +YEEM ++G++P++ TYN+LL+   +  +  +   ++K M + G  P+  TY++++   
Sbjct: 64  RLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGL 123

Query: 351 GR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQ 408
            +  +  E    ++ +M E+G   +   YN L+  +C D    + A+++ E+M +S+   
Sbjct: 124 CKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDEN-IERAYKLLEEM-ASKGYV 181

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD+ T++++++     GKVSEA+  F+ M   G+ P++     L+    K  +TD+ ++ 
Sbjct: 182 PDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKL 241

Query: 469 LNRLPELGITPD 480
              +   G  PD
Sbjct: 242 FKDVIAKGYMPD 253



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 40/90 (44%)

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
           C P+ +TF  ++     +GK+ +   +F +ML+ G  P+      LI  Y K  R D+  
Sbjct: 4   CSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN 63

Query: 467 RALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           R    +  +G+ P       LLN   +  K
Sbjct: 64  RLYEEMVSVGLEPSIYTYNSLLNAFCKETK 93


>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
 gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
          Length = 597

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 146/304 (48%), Gaps = 1/304 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I YN+ +  + + R L +AE  +  +L+    P   T++ L+     +   ++A    
Sbjct: 171 DIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAEGVI 230

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  P A  Y++ +D   +A   E A  +Y R + E+ R +   +  +I +YG A
Sbjct: 231 SEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLMINVYGKA 290

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                 L V+ EMK++G KPN+ TY  L++   R     + + +++EM   G  P+   Y
Sbjct: 291 NQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAY 350

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ AY RA   +    ++  M+  G +     YN L+      G   EA   F+++K 
Sbjct: 351 NALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELK- 409

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +  +P   +   +++  +  G V+  E +  ++ ++G  P+ F L +++  YG+A R D
Sbjct: 410 QQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLD 469

Query: 464 DVVR 467
           D+ R
Sbjct: 470 DMER 473



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 131/277 (47%), Gaps = 5/277 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +  Y   +  F +    +KAE +F++M   G +PD   ++ L+       LP  A E F 
Sbjct: 312 ICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFS 371

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   GC+PD  +Y+ ++DA+GRAG  + A   +   + +  R    +   L+  +  +G
Sbjct: 372 LMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSG 431

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLS---PNW 340
           N   C  V  ++   G++P+    N +L+  GRA R   ++ ++  M   +G S   P+ 
Sbjct: 432 NVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPDT 491

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
           +TY  L+ AYGRA Y +   + +R +  +G+   V  + + +   A      +   +FE+
Sbjct: 492 STYNVLVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEE 551

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           M  +  C PD+ T   ++  CS   +V +  A+   M
Sbjct: 552 MVDA-GCYPDAGTAKVLLAACSDERQVEQVTAIVRSM 587



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 153/351 (43%), Gaps = 4/351 (1%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +YN  +    K R  +KA  ++  M     + +  T+  +I+     N P  ++  F  M
Sbjct: 244 VYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREM 303

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            S GC P+  TY+++++A+ R G  E A  +++  +      D  A++ L++ Y  AG  
Sbjct: 304 KSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLP 363

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
            G   ++  M+ +G +P+  +YN L+D  GRA    + +  ++E+   G+ P   ++  L
Sbjct: 364 QGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLL 423

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L A+ R+        V  ++ + G++      N +L      G  D+   +F  M+  + 
Sbjct: 424 LSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDG 483

Query: 407 CQ---PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                PD+ T++ ++      G +   EA F  +   G   ++   TS I  Y + +   
Sbjct: 484 ASAGAPDTSTYNVLVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYG 543

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 513
             +R    + + G  PD      LL   +   + E++  +V  + K    L
Sbjct: 544 QCLRVFEEMVDAGCYPDAGTAKVLLAACSDERQVEQVTAIVRSMHKDAKTL 594



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 170/389 (43%), Gaps = 31/389 (7%)

Query: 112 CSATEDDVFSVLRCL-GDDFLEQDCVIILNNMTN--PDTAALALTYFTNKLKA---SKEV 165
           C  TED    +LR   G   L +   +I     N  P TA +   Y    LKA    K V
Sbjct: 203 CVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAV 262

Query: 166 ILYN---------------VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA 210
            +Y                + + V+ K      + R+F +M   G KP+  T++ L++  
Sbjct: 263 EVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAF 322

Query: 211 RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP 270
               L  KA E FE M   G +PD   Y+++++AY RAG  + A  ++    +     D 
Sbjct: 323 AREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDR 382

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
            +++ L+  +G AG        ++E+K  G++P M ++  LL    R+    + + +  +
Sbjct: 383 ASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQ 442

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV-----TLYNTLLAMC 385
           +  +GL P+     ++L AYGRA   +D   ++  M E+G   S      + YN L+   
Sbjct: 443 LHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAM-ERGDGASAGAPDTSTYNVLVNAY 501

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              GY D     F  + ++     D  T++S I   + + +  +   +F EM++AG  P+
Sbjct: 502 GRAGYLDRMEAAFRSL-AARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPD 560

Query: 446 LFVLTSLIQCYGKAQRTDDV---VRALNR 471
                 L+      ++ + V   VR++++
Sbjct: 561 AGTAKVLLAACSDERQVEQVTAIVRSMHK 589



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 150/368 (40%), Gaps = 50/368 (13%)

Query: 181 LDKAERLFDDMLDRGVKPD-NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           + +A  L+DD+++  V+   N  +  +I+            EW  R  SF   PD + Y+
Sbjct: 129 IPQAHDLWDDIVNVAVQLRLNRQWEPIIT----------VCEWVLRRSSF--RPDIICYN 176

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +IDAYG+   +  A   Y      +     + ++ L++ Y  +G       V  EM+  
Sbjct: 177 LLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRN 236

Query: 300 GVKPNMITYNNLLDTM-----------------------------------GRAKRPWQV 324
           G+ P    YN  LD +                                   G+A +P   
Sbjct: 237 GIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLMINVYGKANQPMSS 296

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
             +++EM   G  PN  TY +L+ A+ R    E    V+ EM++ G +  V  YN L+  
Sbjct: 297 LRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEA 356

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
            +  G    A EIF  M+    C+PD  +++ ++      G   EAEA F E+ + G  P
Sbjct: 357 YSRAGLPQGASEIFSLMEHM-GCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRP 415

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLV 503
            +     L+  + ++         + +L + G+ PD      +LN   +  + +++ +L 
Sbjct: 416 TMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLF 475

Query: 504 ECVEKSNS 511
             +E+ + 
Sbjct: 476 AAMERGDG 483


>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g21222; AltName: Full=SNF1-like protein kinase AtC401
 gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
          Length = 831

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 155/318 (48%), Gaps = 3/318 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I Y   +    + +       L   +   G+KPD + F+ +I+ +  +   ++A++ FE
Sbjct: 354 LITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFE 413

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA-RNEKWRIDPNAFSTLIKLYGTA 283
           +M   GC P A T++++I  YG+ G +E +  L D   R+E  + +    + L++ +   
Sbjct: 414 KMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQ 473

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TIYKEMTDNGLSPNWNT 342
              +   N+  +M++ GVKP+++T+N L     R       +  I   M  N + PN  T
Sbjct: 474 RKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRT 533

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
             +++  Y      E+ L  +  MKE G+  ++ ++N+L+    ++   D   E+  D+ 
Sbjct: 534 CGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVV-DLM 592

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
                +PD  TFS+++   S  G +   E ++ +MLE G +P++   + L + Y +A   
Sbjct: 593 EEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEP 652

Query: 463 DDVVRALNRLPELGITPD 480
           +   + LN++ + G+ P+
Sbjct: 653 EKAEQILNQMRKFGVRPN 670



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 133/313 (42%), Gaps = 20/313 (6%)

Query: 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
           C D+    +L + +++RG                    P +A   F  +   G  P  +T
Sbjct: 316 CGDVRSRTKLMNGLIERG-------------------RPQEAHSIFNTLIEEGHKPSLIT 356

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           Y++++ A  R  +      L  +      + D   F+ +I     +GN D  + ++E+MK
Sbjct: 357 YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMK 416

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYG 356
             G KP   T+N L+   G+  +  +   +   M  D  L PN  T   L++A+   R  
Sbjct: 417 ESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKI 476

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           E+  ++  +M+  G++  V  +NTL    A +G T  A ++          +P+  T  +
Sbjct: 477 EEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGT 536

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           ++      GK+ EA   F  M E G  PNLFV  SLI+ +      D V   ++ + E G
Sbjct: 537 IVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFG 596

Query: 477 ITPDDRFCGCLLN 489
           + PD      L+N
Sbjct: 597 VKPDVVTFSTLMN 609



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 123/264 (46%), Gaps = 16/264 (6%)

Query: 91  KEKSYDTR-----YNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLE--QDCVIILNNMT 143
           K +SY  +     +N+L K  A + S    ED +  + R L +      + C  I+N   
Sbjct: 485 KMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPRMLHNKVKPNVRTCGTIVNGYC 542

Query: 144 NPDTAALALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNV 201
                  AL +F    +L     + ++N  +K F    D+D    + D M + GVKPD V
Sbjct: 543 EEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVV 602

Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
           TFSTL++         +  E +  M   G DPD   +S +   Y RAG  E A  + ++ 
Sbjct: 603 TFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQM 662

Query: 262 RNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRA 318
           R  K+ + PN   ++ +I  + +AG     + VY++M  I G+ PN+ TY  L+   G A
Sbjct: 663 R--KFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEA 720

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNT 342
           K+PW+ + + K+M    + P   T
Sbjct: 721 KQPWKAEELLKDMEGKNVVPTRKT 744



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 125/253 (49%), Gaps = 5/253 (1%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMP 227
           N+ ++ +   R +++A  +   M   GVKPD VTF+TL    AR+ +          RM 
Sbjct: 464 NILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRML 523

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGN 285
                P+  T  ++++ Y   G +E A   + R +  +  + PN   F++LIK +    +
Sbjct: 524 HNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMK--ELGVHPNLFVFNSLIKGFLNIND 581

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            DG   V + M+  GVKP+++T++ L++         + + IY +M + G+ P+ + ++ 
Sbjct: 582 MDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSI 641

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L + Y RA   E    +  +M++ G++ +V +Y  +++     G   +A ++++ M    
Sbjct: 642 LAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIV 701

Query: 406 NCQPDSWTFSSMI 418
              P+  T+ ++I
Sbjct: 702 GLSPNLTTYETLI 714



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 7/193 (3%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +++A R F  M + GV P+   F++LI      N  +   E  + M  FG  PD +T+S+
Sbjct: 547 MEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFST 606

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +++A+   G+++    +Y          D +AFS L K Y  AG  +    +  +M+  G
Sbjct: 607 LMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFG 666

Query: 301 VKPNMITYNNLLD---TMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYG 356
           V+PN++ Y  ++    + G  K+  QV   YK+M    GLSPN  TY +L+  +G A+  
Sbjct: 667 VRPNVVIYTQIISGWCSAGEMKKAMQV---YKKMCGIVGLSPNLTTYETLIWGFGEAKQP 723

Query: 357 EDTLSVYREMKEK 369
                + ++M+ K
Sbjct: 724 WKAEELLKDMEGK 736



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 100/202 (49%), Gaps = 5/202 (2%)

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G KP++ITY  L+  + R K    + ++  ++  NGL P+   + +++ A   +   +  
Sbjct: 349 GHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQA 408

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           + ++ +MKE G + + + +NTL+     +G  +E+  + + M   E  QP+  T + ++ 
Sbjct: 409 MKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQ 468

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT---DDVVRALNRLPELG 476
               + K+ EA  +  +M   G +P++    +L + Y +   T   +D++  + R+    
Sbjct: 469 AWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPRMLHNK 526

Query: 477 ITPDDRFCGCLLNVMTQTPKEE 498
           + P+ R CG ++N   +  K E
Sbjct: 527 VKPNVRTCGTIVNGYCEEGKME 548


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 152/346 (43%), Gaps = 19/346 (5%)

Query: 133 QDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD--LDKAERLFDD 190
           Q+ V++ N +   D    A TY                T  +   CR+  LDKA  +FD 
Sbjct: 214 QEAVLVFNKIFQFDLCPDAFTY----------------TSLILGHCRNRKLDKAFEVFDR 257

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           M+  G  P++VT+STLI+         +A++  E M   G +P   TY+  I +    G 
Sbjct: 258 MVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGR 317

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
           V+ A  L      +        ++ +I     AG  +  + +Y +M   G+ PN +TYN 
Sbjct: 318 VDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNA 377

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L++ +    R      I+  M  +G   N  TY  +++        E  + V+ +M + G
Sbjct: 378 LINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDG 437

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
              +V  YNTL+      GY + A      MK S NC+PD  T+  +I+     GK+  A
Sbjct: 438 PSPTVVTYNTLIVENLKRGYLNNATRFLYMMKES-NCEPDERTYCELISGFCKGGKLDSA 496

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
            + F EML+ G  PN +  T++I  Y K  + D  +    R+ E G
Sbjct: 497 TSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENG 542



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 141/314 (44%), Gaps = 9/314 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +K      D++KA  +F+ ML  G  P  VT++TLI         N A  +   M 
Sbjct: 410 YNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMK 469

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGN 285
              C+PD  TY  +I  + + G ++ A   +      K  I PN   ++ +I  Y   G 
Sbjct: 470 ESNCEPDERTYCELISGFCKGGKLDSATSFFYEML--KCGISPNQWTYTAMIDGYCKEGK 527

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D  L+++E M+  G   ++ TYN ++  + +  R  + +    +MT+ GL PN  TY S
Sbjct: 528 IDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTS 587

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+    +         ++ EM++K    +   Y +L+      G  D A  + E+     
Sbjct: 588 LINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTEN----- 642

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
            C+P   T+S++++     G+ +EA  +   M E G  P++ +  SL+  + K+ + D  
Sbjct: 643 GCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCA 702

Query: 466 VRALNRLPELGITP 479
           +   N +   G  P
Sbjct: 703 LEIFNLMAVKGFQP 716



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 149/338 (44%), Gaps = 9/338 (2%)

Query: 138 ILNNMTNPDTAALALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           I+  +   D    A+  F   LK   S  V+ YN  +    K   L+ A R    M +  
Sbjct: 413 IIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESN 472

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
            +PD  T+  LIS        + A  +F  M   G  P+  TY++MID Y + G +++A 
Sbjct: 473 CEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVAL 532

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L++R            ++ +I        F        +M   G++PN ITY +L++ +
Sbjct: 533 SLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGL 592

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +         I+ EM      PN +TY SL+  YG  + G+  +     + E G + ++
Sbjct: 593 CKNTATNLAFKIFHEMEKKNCLPNAHTYTSLI--YGLCQEGK--VDAAERLTENGCEPTI 648

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMF 434
             Y+TL++     G ++EA ++ E+MK  +   P    + S++ +  C+  KV  A  +F
Sbjct: 649 DTYSTLVSGLCREGRSNEASQLVENMK-EKGLSPSMEIYCSLL-VAHCKSLKVDCALEIF 706

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           N M   GF+P+LF+   LI       R ++ +     L
Sbjct: 707 NLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSL 744



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 96/418 (22%), Positives = 182/418 (43%), Gaps = 22/418 (5%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDV--FSVLR 124
           H  T ++ + + W++ +     K     + +  N LVK     D   A  D V    +  
Sbjct: 81  HINTDTALQFFYWISKR--HFYKHDMGCFVSMLNRLVK-----DKILAPADHVRILMIKA 133

Query: 125 CLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKA 184
           C  +D L++     L+ +++ D+     T ++           +N  +    K   +  A
Sbjct: 134 CRNEDELKR-VTDFLHGISSSDSGLFGFTLYS-----------FNTLLLQLGKFDMVTSA 181

Query: 185 ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244
           + ++  +   GVKP  +TF+T+I+         +AV  F ++  F   PDA TY+S+I  
Sbjct: 182 QNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILG 241

Query: 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
           + R   ++ AF ++DR   +    +   +STLI      G     +++ EEM   G++P 
Sbjct: 242 HCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPT 301

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           + TY   + ++    R      + + M   G SP+  TY +++    RA   E  + +Y 
Sbjct: 302 VYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYH 361

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           +M ++G+  +   YN L+      G    A +IF+ M+       ++ T++ +I      
Sbjct: 362 KMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWME-GHGTLANAQTYNQIIKGLFGM 420

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
             + +A  +FN+ML+ G  P +    +LI    K    ++  R L  + E    PD+R
Sbjct: 421 DDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDER 478



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 100/229 (43%), Gaps = 36/229 (15%)

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           +F+TL+   G         NVY ++ + GVKP+++T+N +++ + +  +  +   ++ ++
Sbjct: 164 SFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKI 223

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
               L P+  TY SL+  + R R                                     
Sbjct: 224 FQFDLCPDAFTYTSLILGHCRNRK-----------------------------------L 248

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           D+AFE+F+ M   + C P+S T+S++I      G++ EA  M  EM E G EP ++  T 
Sbjct: 249 DKAFEVFDRM-VKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTV 307

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
            I       R DD +  +  + + G +P  +    +++ + +  K EL 
Sbjct: 308 PISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELA 356



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 5/160 (3%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           CR+   ++A +L ++M ++G+ P    + +L+     +   + A+E F  M   G  P  
Sbjct: 659 CREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHL 718

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
             Y  +I A       E A  ++     ++W  D   ++ L+      G+ D C+     
Sbjct: 719 FIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYL 778

Query: 296 MKAIGVKPNMITYNNL---LDTMGRAKRPWQVKTIYKEMT 332
           M++    P++ TY  L   L  +G++    Q+    +E++
Sbjct: 779 MESRNCTPSLHTYIILARELSKVGKSIGTDQIGNRLREVS 818


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 157/332 (47%), Gaps = 7/332 (2%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
            S  V  YN+ ++ F    +L+     F +M   G  P+ VT++T+I          +A 
Sbjct: 199 VSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAF 258

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           +    M   G +P+ ++Y+ +I+   R G ++    + +     ++  D   F+TLI  Y
Sbjct: 259 KLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGY 318

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              GNF   L ++ EM   G+ PN++TY  L+++M +A    +      +M D GL PN 
Sbjct: 319 CNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNG 378

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY +L+  + +  + +    + +EM E G   ++  YN L+     +G  ++A  + ++
Sbjct: 379 RTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQE 438

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN---EMLEAGFEPNLFVLTSLIQCYG 457
           M       PD  ++S++I+   CR +  E E  F    EM+  G  P++   +SLIQ   
Sbjct: 439 M-IERGFIPDVVSYSTIIS-GFCRNQ--ELEKAFQLKVEMVAKGISPDVATYSSLIQGLC 494

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           K +R  +V      +  LG+ PD+     L+N
Sbjct: 495 KQRRLGEVCDLFQEMLSLGLPPDEVTYTSLIN 526



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 161/364 (44%), Gaps = 17/364 (4%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  V+ Y   +    K  +L++A    D M DRG+ P+  T++TLI          +A +
Sbjct: 340 SPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQ 399

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + M   G  P  +TY+++I+ +   G +E A GL        +  D  ++ST+I  + 
Sbjct: 400 IMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFC 459

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                +    +  EM A G+ P++ TY++L+  + + +R  +V  +++EM   GL P+  
Sbjct: 460 RNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEV 519

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY SL+ AY      +  L ++ EM +KG    +  YN L+        T EA  +   +
Sbjct: 520 TYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKL 579

Query: 402 KSSENCQPDSWTFSSMITICS---------------CRGKVSEAEAMFNEMLEAGFEPNL 446
              E+  P+  T++++I  C+                +G ++EA+ +   ML+ G++ N 
Sbjct: 580 LYEESV-PNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNE 638

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE-ELGKLVEC 505
            V   +I  + K    +        +   G  P       L   +    KE EL +L++ 
Sbjct: 639 EVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDY 698

Query: 506 VEKS 509
             KS
Sbjct: 699 TLKS 702



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 146/323 (45%), Gaps = 43/323 (13%)

Query: 197 KPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA-GNVEMA 254
           K  +  F  ++ SCAR+N L NKA+       S+G  P  L+Y++++DA  R   +V++A
Sbjct: 129 KSSSAVFDLVVKSCARVN-LINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIA 187

Query: 255 FGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            G++         + PN ++   LI+ + TAGN +  L  + EM+  G  PN++TYN ++
Sbjct: 188 EGIFKEMVESG--VSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTII 245

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY----------------ASLLRAYGRARYG 356
           D   + ++  +   + + M   GL+PN  +Y                + +L    + RY 
Sbjct: 246 DAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV 305

Query: 357 ED-------------------TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
            D                    L ++ EM + G+  +V  Y TL+      G  + A E 
Sbjct: 306 PDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF 365

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            + M+      P+  T++++I   S +G + +A  +  EM+E GF P +    +LI  + 
Sbjct: 366 LDQMR-DRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHC 424

Query: 458 KAQRTDDVVRALNRLPELGITPD 480
              R +D    L  + E G  PD
Sbjct: 425 ILGRMEDASGLLQEMIERGFIPD 447


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 177/386 (45%), Gaps = 44/386 (11%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           +L RG  PD VT++TLI    M +  +KA   F RM   GC P+A+TY +++    R GN
Sbjct: 157 ILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGN 216

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
           + +A  L+    N+              LYG                 I  KP +I+Y+ 
Sbjct: 217 ISIALKLHQEMLNDS------------SLYG-----------------INFKPVVISYSI 247

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           ++D + + +R  + + +++EM   G++P   +Y SL+         E+   ++ EM  +G
Sbjct: 248 IIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMW--------EEAKRLFNEMVNQG 299

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
           +Q +V  +N L+ +    G   EA ++ E M       P+  T++S+I      G ++ A
Sbjct: 300 VQPNVVTFNVLIDVLCKEGKVIEAKDLLEVM-IQRGIVPNLLTYNSLIEGFCLVGDLNSA 358

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
             +F  M   G EP++   T LI  Y K  + ++ ++  N + ++G  PD +  G LL  
Sbjct: 359 RELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTG 418

Query: 491 MTQTPKEELGKLVECVEKSNSKLG--YVVKLLLEEQDIEGDFKKEATELFNSI-SKDVK- 546
           + Q  K    K +  V K     G  Y+  + L      G    EA ELFN + S ++K 
Sbjct: 419 LFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCL-FEAMELFNKLKSYNIKL 477

Query: 547 KAYC-NCLIDLCVNLNLLENACKLLE 571
              C NCLID       LE A +L E
Sbjct: 478 DIECFNCLIDGLCKAGKLETAWELFE 503



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 148/299 (49%), Gaps = 1/299 (0%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           ++A+RLF++M+++GV+P+ VTF+ LI          +A +  E M   G  P+ LTY+S+
Sbjct: 286 EEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSL 345

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I+ +   G++  A  L+    ++    D   ++ LI  Y      +  + +Y  M  +G 
Sbjct: 346 IEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGK 405

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           +P++ TY  LL  + +  +    K ++  M   G+  +   Y   L    +     + + 
Sbjct: 406 RPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAME 465

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           ++ ++K   ++L +  +N L+      G  + A+E+FE +   E  QPD  T++ MI   
Sbjct: 466 LFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEE-LQPDVVTYNIMIHEF 524

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              G+V +A  +F +M + G  P+     +LI+ + ++++ + VV  L+ + +  ++ D
Sbjct: 525 CRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVSLD 583



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 106/214 (49%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI Y V +  + K   +++A +L++ ML  G +PD  T+  L++          A + F
Sbjct: 373 DVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLF 432

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M  +G   D   Y   ++   + G +  A  L+++ ++   ++D   F+ LI     A
Sbjct: 433 GVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKA 492

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +    ++E++    ++P+++TYN ++    R  +  +   ++++M  NG +P+  TY
Sbjct: 493 GKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITY 552

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
           A+L+R +  ++  E  + +   M ++ + L V +
Sbjct: 553 ATLIRGFFESKKLEKVVELLHMMVQRDVSLDVNI 586



 Score = 43.9 bits (102), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNE 436
           +  LL+  A + +  + F ++  M+ S    PD  T + ++  C C   +V E  A+   
Sbjct: 99  FTHLLSGLAKIKHYSQVFYLYNQMRLS-GISPDCCTLNILLN-CLCNVNRVGEGLAVMAG 156

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           +L  G+ P++   T+LI+      R         R+ +LG TP+    G L+  + +T
Sbjct: 157 ILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRT 214


>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Cucumis sativus]
          Length = 707

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 174/388 (44%), Gaps = 39/388 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ +N+ +  ++      KA   F+ M    ++PD  T + +I C        +A+E F
Sbjct: 134 DLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIF 193

Query: 224 ERM--PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             M      C PD +T++S+I  Y   G +E    ++     E  + +  +++ LI  Y 
Sbjct: 194 SSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYA 253

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
           + G      +V++EMK  G  P++++Y +L+ T GR+++P + + ++  M  N   PN  
Sbjct: 254 SHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLV 313

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA--------------- 386
           +Y +L+ AYG   Y    + + REM++ G+  +V    TLLA C                
Sbjct: 314 SYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAA 373

Query: 387 --------------------DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
                               ++G  ++A  ++  M+ ++  +PDS TF+ +I+ C    K
Sbjct: 374 ELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSME-NKTTKPDSVTFTILISGCCRMSK 432

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
             EA   F EML+     +  + +S+I  Y K  +        N L   G  PD      
Sbjct: 433 YEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTA 492

Query: 487 LLNVMTQTPK-EELGKLVECVEKSNSKL 513
           ++N  + +   E++  L + +E +N +L
Sbjct: 493 MINAYSASEMWEKVCALYQEMEANNIQL 520



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 127/266 (47%), Gaps = 7/266 (2%)

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FST 275
           +  +W +   ++    D   Y+ MI  + R   ++ A GL+     +KWR  P+   ++ 
Sbjct: 15  QVFDWMKNQRNYCARND--IYNMMIRLHARHNRIDQARGLFFEM--QKWRCKPDVETYNA 70

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LI  +G AG +    N+ E+M    + P+  T+NNL++  G      +   + K+MTDNG
Sbjct: 71  LINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKKMTDNG 130

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           + P+  T+  +L AY         LS +  MK   ++   T  N ++     V    +A 
Sbjct: 131 VGPDLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAI 190

Query: 396 EIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           EIF  M+   + C+PD  TF+S+I + S RG++ + +A+F+ ML  G +PN+    +LI 
Sbjct: 191 EIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALIS 250

Query: 455 CYGKAQRTDDVVRALNRLPELGITPD 480
            Y       +     + +   G  PD
Sbjct: 251 AYASHGMDKEAFSVFDEMKRSGFCPD 276



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 154/325 (47%), Gaps = 1/325 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   + ++     ++  + +F  ML  G+KP+ V+++ LIS    + +  +A   F
Sbjct: 206 DVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVF 265

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   G  PD ++Y+S+I  +GR+     A  ++D  +  K + +  +++ L+  YG+ 
Sbjct: 266 DEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSN 325

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     +++  EM+  G+ PN+++   LL   GR  +   + ++       G+  N    
Sbjct: 326 GYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIAC 385

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S + +Y      E  +++YR M+ K  +     +  L++ C  +   +EA   F++M  
Sbjct: 386 NSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLD 445

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                  S  +SSMI   S +G++ +AE++FN +  +G  P+L   T++I  Y  ++  +
Sbjct: 446 LR-IPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWE 504

Query: 464 DVVRALNRLPELGITPDDRFCGCLL 488
            V      +    I  D   C  L+
Sbjct: 505 KVCALYQEMEANNIQLDSIACSALM 529



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 149/322 (46%), Gaps = 15/322 (4%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW---- 222
           +YN+ +++  +   +D+A  LF +M     KPD  T++ LI      N   +A +W    
Sbjct: 32  IYNMMIRLHARHNRIDQARGLFFEMQKWRCKPDVETYNALI------NAHGRAGQWRWAT 85

Query: 223 --FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
              E M      P   T++++I+A G  GN   A  +  +  +     D    + ++  Y
Sbjct: 86  NIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAY 145

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD--NGLSP 338
            +   +   L+ +E MK   ++P+  T N ++  + + K+  Q   I+  M +  +   P
Sbjct: 146 KSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRP 205

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  T+ S++  Y      ED  +V+  M  +G++ ++  YN L++  A  G   EAF +F
Sbjct: 206 DVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVF 265

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           ++MK S  C PD  +++S+I+      + + A  +F+ M     +PNL    +L+  YG 
Sbjct: 266 DEMKRSGFC-PDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGS 324

Query: 459 AQRTDDVVRALNRLPELGITPD 480
                  V  L  + + GI P+
Sbjct: 325 NGYLPQAVDILREMEQDGIHPN 346



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 105/285 (36%), Gaps = 73/285 (25%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPN--------------------- 217
           + +KA  L+  M ++  KPD+VTF+ LIS C RM+                         
Sbjct: 397 EYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYS 456

Query: 218 -------------KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
                        KA   F  +   GC PD +TY++MI+AY  +   E    LY      
Sbjct: 457 SMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEAN 516

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-------------------- 304
             ++D  A S L+K +         L + E MK  G+  N                    
Sbjct: 517 NIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILRDWRKA 576

Query: 305 ---------------MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
                          + T N+LL  +G++ +   +  ++      G S N NTY+ LL+ 
Sbjct: 577 TDLINLMEPSFHLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVALGSSVNINTYSILLKN 636

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL---AMCADVGYT 391
              A      + V + M + G+Q S  +YN +L     C D  Y 
Sbjct: 637 LLSAGKWRKYIEVLQWMNDAGIQPSHAMYNNILFFAQHCGDAEYA 681



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/355 (18%), Positives = 140/355 (39%), Gaps = 36/355 (10%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPN- 217
           K    ++ YN  M  +     L +A  +  +M   G+ P+ V+  TL++ C R     N 
Sbjct: 307 KCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNI 366

Query: 218 ---------------------------------KAVEWFERMPSFGCDPDALTYSSMIDA 244
                                            KA+  +  M +    PD++T++ +I  
Sbjct: 367 DSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISG 426

Query: 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
             R    E A   +    + +  +    +S++I  Y   G      +++  +K  G  P+
Sbjct: 427 CCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPD 486

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           ++TY  +++    ++   +V  +Y+EM  N +  +    ++L++A+ +     + L +  
Sbjct: 487 LVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFNKGNQASNVLILAE 546

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
            MKEKG+  +   +  +L+ C+ +    +A ++   M+ S +      T + ++      
Sbjct: 547 IMKEKGIPFNDANFFEMLSACSILRDWRKATDLINLMEPSFHLVSLG-TINHLLQFLGKS 605

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           GK      +F   +  G   N+   + L++    A +    +  L  + + GI P
Sbjct: 606 GKTEIMIKLFYRFVALGSSVNINTYSILLKNLLSAGKWRKYIEVLQWMNDAGIQP 660


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 182/371 (49%), Gaps = 7/371 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I++N         LAL      +K   E  ++  +  +  +   + + +A  L D M   
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G +P+ VTF+TLI    ++N  ++A+   +RM + GC PD +TY  +++   + G+ ++A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 255 FGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
           F L ++   E+ +++P    ++T+I       + D  LN+++EM+  G++PN++TY++L+
Sbjct: 241 FNLLNKM--EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 298

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
             +    R      +  +M +  ++P+  T+++L+ A+ +     +   +Y EM ++ + 
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 358

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            S+  Y++L+         DEA ++FE M  S++C PD  T++++I       +V E   
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFM-VSKHCFPDVVTYNTLIKGFCKYKRVEEGME 417

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           +F EM + G   N      LIQ   +A   D        +   G+ P+      LL+ + 
Sbjct: 418 VFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 477

Query: 493 QTPKEELGKLV 503
           +  K E   +V
Sbjct: 478 KNGKLEKAMVV 488



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 174/395 (44%), Gaps = 44/395 (11%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           +++N +       LA     NK++  K    V++YN  +    K + +D A  LF +M  
Sbjct: 226 VVVNGLCKRGDTDLAFN-LLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           +G++P+ VT+S+LISC       + A      M     +PD  T+S++IDA+ + G +  
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344

Query: 254 AFGLYDRARNEKWRIDPN-------------------------------------AFSTL 276
           A  LYD     K  IDP+                                      ++TL
Sbjct: 345 AEKLYDEM--VKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           IK +      +  + V+ EM   G+  N +TYN L+  + +A      + I+KEM  +G+
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            PN  TY +LL    +    E  + V+  ++   M+ ++  YN ++      G  ++ ++
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           +F ++ S +  +PD   +++MI+    +G   EA+A+F EM E G  PN     +LI+  
Sbjct: 523 LFCNL-SLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRAR 581

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            +    +     +  +   G   D    G + N++
Sbjct: 582 LRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 616



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 159/333 (47%), Gaps = 3/333 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+AL     K +    +I ++  +    K    D    L + M + G+  ++ T+S LI+
Sbjct: 65  AVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILIN 124

Query: 209 C-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           C  R + LP  A+    +M   G +P+ +T SS+++ Y  +  +  A  L D+     ++
Sbjct: 125 CFCRRSQLP-LALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQ 183

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            +   F+TLI            + + + M A G +P+++TY  +++ + +         +
Sbjct: 184 PNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNL 243

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
             +M    L P    Y +++    + ++ +D L++++EM+ KG++ +V  Y++L++   +
Sbjct: 244 LNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCN 303

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G   +A  +  DM       PD +TFS++I      GK+ EAE +++EM++   +P++ 
Sbjct: 304 YGRWSDASRLLSDM-IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIV 362

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             +SLI  +    R D+  +    +      PD
Sbjct: 363 TYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 395



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/300 (21%), Positives = 143/300 (47%), Gaps = 3/300 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           LD A  LF +M+     P  + FS L+S  A+MN   +  +   E+M + G   +  TYS
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKF-DVVISLGEQMQNLGIPHNHYTYS 120

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +I+ + R   + +A  +  +     +  +    S+L+  Y  +      + + ++M   
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G +PN +T+N L+  +    +  +   +   M   G  P+  TY  ++    +    +  
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
            ++  +M++  ++  V +YNT++       + D+A  +F++M+ ++  +P+  T+SS+I+
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEME-TKGIRPNVVTYSSLIS 299

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                G+ S+A  + ++M+E    P++F  ++LI  + K  +  +  +  + + +  I P
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 359



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 114/232 (49%), Gaps = 1/232 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +K F K + +++   +F +M  RG+  + VT++ LI         + A E F
Sbjct: 395 DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIF 454

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M S G  P+ +TY++++D   + G +E A  +++  +  K       ++ +I+    A
Sbjct: 455 KEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 514

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +   +++  +   GVKP+++ YN ++    R     +   ++KEM ++G  PN   Y
Sbjct: 515 GKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCY 574

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
            +L+RA  R    E +  + +EM+  G     +    +  M  D G  D++F
Sbjct: 575 NTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD-GRLDKSF 625


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 197/410 (48%), Gaps = 6/410 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I +N        +LAL      +K   E  ++  +  +  +   + +  A  L D M++ 
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G KPD  TF+TLI    ++N  ++AV   ++M   GC PD +TY ++++   + G++++A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             L ++    + + +   F+T+I       + +  ++++ EM+  G++PN++TYN+L++ 
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINC 302

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +    R      +   M +  ++PN  T+ +L+ A+ +     +   ++ EM ++ +   
Sbjct: 303 LCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPD 362

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAM 433
              YN L+         DEA ++F+ M  S++C P+  T++++I   C C+ +V +   +
Sbjct: 363 TITYNLLINGFCMHNRLDEAKQMFKFM-VSKDCLPNIQTYNTLINGFCKCK-RVEDGVEL 420

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           F EM + G   N    T++IQ + +A   D       ++    +  D      LL+ +  
Sbjct: 421 FREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCS 480

Query: 494 TPKEELGKLV-ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 542
             K +   ++ + ++KS  +L   +   + E   +     EA +LF S+S
Sbjct: 481 YGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLS 530



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 170/356 (47%), Gaps = 45/356 (12%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           ++N +       LAL    NK++A++    V+++N  +    K R ++ A  LF +M  +
Sbjct: 229 VVNGLCKRGDIDLALNLL-NKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETK 287

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G++P+ VT+++LI+C       + A      M     +P+ +T++++IDA+ + G +  A
Sbjct: 288 GIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEA 347

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             L++         D   ++ LI  +      D    +++ M +    PN+ TYN L++ 
Sbjct: 348 EKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLING 407

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY------------------------ 350
             + KR      +++EM+  GL  N  TY ++++ +                        
Sbjct: 408 FCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTD 467

Query: 351 ---------GRARYGE-DT-LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
                    G   YG+ DT L +++ +++  M+L++ +YNT++      G   EA+++F 
Sbjct: 468 IMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLF- 526

Query: 400 DMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
               S + +PD  T+++MI+ +CS R  + EA+ +F +M E G  PN     +LI+
Sbjct: 527 ---CSLSIKPDVVTYNTMISGLCSKR-LLQEADDLFRKMKEDGTLPNSGTYNTLIR 578



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 149/352 (42%), Gaps = 42/352 (11%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ +N  +    K    +    L + M   G+  D  T+S  I+C    +  + A+    
Sbjct: 83  IVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLA 142

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK------ 278
           +M   G +PD +T SS+++ Y  +  +  A  L D+     ++ D   F+TLI       
Sbjct: 143 KMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHN 202

Query: 279 ----------------------LYGTA-------GNFDGCLNVYEEMKAIGVKPNMITYN 309
                                  YGT        G+ D  LN+  +M+A  +K N++ +N
Sbjct: 203 KASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFN 262

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA---YGRARYGEDTLSVYREM 366
            ++D++ + +       ++ EM   G+ PN  TY SL+     YGR       LS    M
Sbjct: 263 TIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLS---NM 319

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
            EK +  +V  +N L+      G   EA ++ E+M    +  PD+ T++ +I       +
Sbjct: 320 LEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEM-IQRSIDPDTITYNLLINGFCMHNR 378

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
           + EA+ MF  M+     PN+    +LI  + K +R +D V     + + G+ 
Sbjct: 379 LDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLV 430



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 137/301 (45%), Gaps = 3/301 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +D A  LF DM+     P  V F+ L+S     N     +   E+M + G   D  TYS 
Sbjct: 64  VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
            I+ + R   + +A  +  +     +  D    S+L+  Y  +      + + ++M  +G
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
            KP+  T+  L+  +    +  +   +  +M   G  P+  TY +++    +    +  L
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
           ++  +M+   ++ +V ++NT++       + + A ++F +M+ ++  +P+  T++S+I  
Sbjct: 244 NLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEME-TKGIRPNVVTYNSLIN- 301

Query: 421 CSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           C C  G+ S+A  + + MLE    PN+    +LI  + K  +  +  +    + +  I P
Sbjct: 302 CLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDP 361

Query: 480 D 480
           D
Sbjct: 362 D 362



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 110/228 (48%), Gaps = 4/228 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +  F KC+ ++    LF +M  RG+  + VT++T+I         + A   F++M 
Sbjct: 401 YNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMV 460

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S     D +TYS ++      G ++ A  ++   +  +  ++   ++T+I+    AG   
Sbjct: 461 SNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVG 520

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              +++    ++ +KP+++TYN ++  +   +   +   ++++M ++G  PN  TY +L+
Sbjct: 521 EAWDLF---CSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLI 577

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           RA  R      +  + +EM+  G     +  + +  M  D G  D++F
Sbjct: 578 RANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNMLHD-GRLDKSF 624


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 144/305 (47%), Gaps = 38/305 (12%)

Query: 178 CR--DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           CR  D+ +AER+F++ML RGV PD ++FS+++     N    +A+ +FE+M   G  PD 
Sbjct: 340 CRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDT 399

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           + Y+ +I+ Y R  +V                                    G L +  E
Sbjct: 400 VIYTILINGYCRNDDVS-----------------------------------GALKMRNE 424

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M   G   +++TYN LL+ + R K       ++KEM + G+ P++ T  +L+  Y +   
Sbjct: 425 MVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGN 484

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
               LS++  M  + ++  V  YNTL+     VG  ++A E++ DM S E   P   +FS
Sbjct: 485 MTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISRE-IFPSYISFS 543

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
            +I      G VSEA  +++EM E G +P L    ++I+ Y +A         LN +   
Sbjct: 544 ILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISE 603

Query: 476 GITPD 480
           G+ PD
Sbjct: 604 GVPPD 608



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 158/336 (47%), Gaps = 5/336 (1%)

Query: 151 ALTYFTNKLKASKEV---ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AL YF  K+K    V   ++Y + +  + +  D+  A ++ ++M++RG   D VT++TL+
Sbjct: 383 ALAYF-EKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLL 441

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +      + + A E F+ M   G  PD  T +++I  Y + GN+  A  L++       +
Sbjct: 442 NGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLK 501

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   ++TL+  +   G  +    ++ +M +  + P+ I+++ L++         +   +
Sbjct: 502 PDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRL 561

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           + EM + G+ P   T  ++++ Y RA            M  +G+      YNTL+     
Sbjct: 562 WDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVK 621

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
               D AF +  +M+      P+  T+++++   S  G++ EAE + ++M++ G  P+  
Sbjct: 622 EENFDRAFFLINNME-ERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKS 680

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
             TSLI  Y       +  R  + + + G  PDD+F
Sbjct: 681 TYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPDDKF 716



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 2/225 (0%)

Query: 147 TAALALTYFTNKLKASK-EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           T AL+L + T  L++ K +V+ YN  M  F K  +++KA+ L+ DM+ R + P  ++FS 
Sbjct: 486 TKALSL-FETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSI 544

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           LI+      L ++A   ++ M   G  P  +T +++I  Y RAGN+  A    +   +E 
Sbjct: 545 LINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEG 604

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
              D   ++TLI  +    NFD    +   M+  G+ PN++TYN +L    R  R  + +
Sbjct: 605 VPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAE 664

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +  +M D G++P+ +TY SL+  Y      ++   V+ EM ++G
Sbjct: 665 MVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRG 709



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 137/280 (48%), Gaps = 5/280 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           +D A ++++D +  G   +  T + ++ +  +   L N  V +   M   G   D +TY+
Sbjct: 205 VDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGV-YLSEMEEKGVYADLVTYN 263

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           ++++AY R G V  AFGL D    +  +     ++ LI      G+++    V +EM  +
Sbjct: 264 TLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGV 323

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G+ PN  T+N +L    R +  W+ + ++ EM   G+ P+  +++S++  + R       
Sbjct: 324 GLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRA 383

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           L+ + +MK  G+     +Y  L+           A ++  +M     C  D  T+++++ 
Sbjct: 384 LAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEM-VERGCVMDVVTYNTLLN 442

Query: 420 ICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
              CRGK + +A+ +F EM+E G  P+ + LT+LI  Y K
Sbjct: 443 -GLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCK 481



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 114/256 (44%), Gaps = 3/256 (1%)

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
            + +  +I  Y +A  +      +   R   + +  NA + L+      G  D    VYE
Sbjct: 154 VVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYE 213

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           +    G   N+ T N +++ + +  +   V     EM + G+  +  TY +L+ AY R  
Sbjct: 214 DFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRG 273

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
              +   +   M  KG++  +  YN L+      G  + A  + ++M     C P++ TF
Sbjct: 274 LVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLC-PNAATF 332

Query: 415 SSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           + M+ + SCR + V EAE +FNEML+ G  P+L   +S++  + +       +    ++ 
Sbjct: 333 NPML-VESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMK 391

Query: 474 ELGITPDDRFCGCLLN 489
            +G+ PD      L+N
Sbjct: 392 GVGLVPDTVIYTILIN 407


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 167/372 (44%), Gaps = 7/372 (1%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR--DLDKAERLFDDMLDRG 195
           ++N +      A A T      ++      +  T  +   CR  DLD A ++F+ M   G
Sbjct: 391 VINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG 450

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
            +P+ VT+STLI+    +   N+A +    M   G  P A T +  I A    G  E A+
Sbjct: 451 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAW 510

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L+   +N+    +   ++ LI     +G     + ++  M   GV PN +TYN L++ +
Sbjct: 511 RLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINIL 570

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
              +R      +   M  NGL  N  TY  +++ Y      +  + V   M ++G   ++
Sbjct: 571 VENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANL 630

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YNT++    D G T  A  I + M+    C+PD W+++ +I       K+  A  +FN
Sbjct: 631 VTYNTIIKGYCDSGNTTSALRILDLMRDG-GCKPDEWSYTELICGFCKISKMESAFGLFN 689

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ-- 493
           EM++ G  PN    T+LI  Y K ++ D     L  +   G  P+ +    L++ +T+  
Sbjct: 690 EMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQN 749

Query: 494 --TPKEELGKLV 503
             +  EEL K++
Sbjct: 750 NFSGAEELCKVM 761



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 1/290 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ YN  +K +    D  KA  + ++ML RG   + VT++T+I     +     A+   +
Sbjct: 595 IVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILD 654

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   GC PD  +Y+ +I  + +   +E AFGL++   ++    +   ++ LI  Y    
Sbjct: 655 LMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDE 714

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D   ++ E MK  G +PN+ TYN L+  + +       + + K M + G+ PN  TY 
Sbjct: 715 KLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYT 774

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +++    +       L ++ +M E+G   ++  Y++L+      G  +EA  +F +++  
Sbjct: 775 AMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE-R 833

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
               PD  T+  MI      GKV  A      M++AG +P L+    LI+
Sbjct: 834 HGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK 883



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 145/332 (43%), Gaps = 1/332 (0%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
            A+ L +  ++       + YN  + +  + R +  A  + + M   G+  + VT++ +I
Sbjct: 543 VAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMI 602

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
               +   P KA+     M   G   + +TY+++I  Y  +GN   A  + D  R+   +
Sbjct: 603 KGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCK 662

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D  +++ LI  +      +    ++ EM   G+ PN +TY  L+D   + ++     ++
Sbjct: 663 PDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSL 722

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            + M  +G  PN  TY  L+    +         + + M E+G+  +V  Y  ++     
Sbjct: 723 LEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCK 782

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G T  A E+F  M   + C P+  T+SS+I      GKV EAE +F E+   G  P+  
Sbjct: 783 NGSTSLALEMFNKM-IEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEI 841

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
               +I+ Y  + + +     L R+ + G  P
Sbjct: 842 TYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQP 873



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 146/348 (41%), Gaps = 39/348 (11%)

Query: 172 MKVFRKCRDLDKAERL--FDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           + + + C   +   R   F DML + G++     +S L+       +    ++ + RM S
Sbjct: 319 IHLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLS 378

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  P+ L Y+++I+A  + GNV  A  +  +    +   D   ++++I  +    + D 
Sbjct: 379 EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDS 438

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L V+ +M   G +PN +TY+ L++ +  + R  +   + +EM  +G+ P  +T    + 
Sbjct: 439 ALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPII 498

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A       ED   ++ +MK KG + +V  Y  L++     G    A  +F  M S +   
Sbjct: 499 ALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM-SRDGVF 557

Query: 409 PDSWTFSSMITIC-----------------------------------SCRGKVSEAEAM 433
           P++ T++++I I                                       G   +A  +
Sbjct: 558 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLV 617

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
            N ML+ G   NL    ++I+ Y  +  T   +R L+ + + G  PD+
Sbjct: 618 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDE 665



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 134/297 (45%), Gaps = 13/297 (4%)

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           R+   A+S L+      G     ++ Y  M + GV+PN++ YN +++ + +       +T
Sbjct: 347 RMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAET 406

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           I K++ ++ +SP+  TY S++  + R    +  L V+ +M ++G + +   Y+TL+    
Sbjct: 407 IMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC 466

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           D G  +EAF++  +M       P + T +  I      G   +A  +F +M   G EPN+
Sbjct: 467 DSGRVNEAFDLIREM-ILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNV 525

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 506
           +  T+LI     +      +   +R+   G+ P+      L+N++ +  + +   +V  +
Sbjct: 526 YTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNL 585

Query: 507 EKSNSKLGYVVKL--LLEEQDIEGDFKKEATELFNSISKD----------VKKAYCN 551
              N     +V    +++   I GD KK    + N + +           + K YC+
Sbjct: 586 MGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCD 642


>gi|125537564|gb|EAY84052.1| hypothetical protein OsI_39281 [Oryza sativa Indica Group]
          Length = 762

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/470 (22%), Positives = 192/470 (40%), Gaps = 52/470 (11%)

Query: 119 VFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFT---NKLKASKEVILYNVTMKVF 175
           V   L C  D F     + +L++ T      +AL +F     +     +   Y   + + 
Sbjct: 323 VLDNLHCKIDAFQANQVLKLLHDHT------IALGFFQWLKRQPGFKHDGHSYTTMIGIL 376

Query: 176 RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
            + R      +L D+M     KP  VT++ +I      N   +AV+ FE M   G +PD 
Sbjct: 377 GQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDR 436

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           +TY ++ID + + G +E+A  LY R +      D   +S ++   G  G+      ++ E
Sbjct: 437 VTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCE 496

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M   G  PN++TYN ++    +A+    V  +YK+M   G  P+  TY+ ++   G    
Sbjct: 497 MVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGH--- 553

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
                                            G+ DEA  +F +M+   +  PD   + 
Sbjct: 554 --------------------------------CGHLDEAEAVFIEMR--HDWAPDEPVYG 579

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
            ++ +    G V +A   ++ ML+ G +PN+    SL+  + K  R  D    L  +   
Sbjct: 580 LLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQ 639

Query: 476 GITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT 535
           G+ P  +    LL+  T+  + ++G   + +  +     ++  L L + +  G   ++ T
Sbjct: 640 GLVPSLQTYTLLLSCCTEA-QAQMGLCCQLMAITGHP-AHMFLLYLPDAEPGGQNVRDHT 697

Query: 536 ELF----NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 581
             F    +S  ++ K+   + +ID      L E A  + E+     VY D
Sbjct: 698 RYFLDMMHSEDRESKRGLMDAVIDFLHKSGLKEEAGFIWEVAAQRNVYPD 747


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 162/329 (49%), Gaps = 10/329 (3%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKA 219
           S  V  YN    V  +   +D+   LF DML+ GV+P+ ++F+T+++  C   N +  KA
Sbjct: 152 SLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKA 211

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
             +F  +  FG   D+ TY+S+I  Y +   +  A+ +++    E    +  +++ LI  
Sbjct: 212 --YFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHG 269

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +   G  D  L ++ +MK  G  P++ TY  L+       +  +    ++EM +NG+ PN
Sbjct: 270 FCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPN 329

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY  L+  + +    ++ + +   M EKG+  SV  +N L+      G  ++A  + +
Sbjct: 330 VYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLD 389

Query: 400 DMKSSENCQPDSWTFSSMITICS-CRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            MK ++ C P+S T++ +  IC  CR K +  A A+ N+M E    PNL    +LI    
Sbjct: 390 SMKLNKVC-PNSRTYNEL--ICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLC 446

Query: 458 KAQRTDDVVRALNRLPELGITPDDR-FCG 485
           KA+  D   R  + + + G  PD R FC 
Sbjct: 447 KARVVDSAWRLHHLMIKDGFVPDQRTFCA 475



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 153/367 (41%), Gaps = 27/367 (7%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+AL     + K S  ++ YN  +    K R +D A RL   M+  G  PD  TF   I 
Sbjct: 419 AMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFID 478

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           C        +A + FE +     + +   Y+++ID Y +A     A  L+ R   E    
Sbjct: 479 CLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFP 538

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           +   F+ L+      G  +  +++ + M     KP + TY  L++ + R     +     
Sbjct: 539 NSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFL 598

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            +M  +G  PN  TY + ++AY R     +   +  ++KE+G+ L   +Y+ L+     +
Sbjct: 599 DQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCI 658

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI-------------------TICSCRG---- 425
           G  D AF +   M  +  C+P   T+S ++                   T  S       
Sbjct: 659 GQLDSAFGVLIRMFDT-GCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIW 717

Query: 426 KVSEAE---AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           K+++ E    +F +M+E G  PN+   + LI+   K +      R  N + E GI+P + 
Sbjct: 718 KIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSEN 777

Query: 483 FCGCLLN 489
               LL+
Sbjct: 778 IHNSLLS 784



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 133/305 (43%), Gaps = 31/305 (10%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I +NV +   RK   ++ A  L D M     KP   T++ LI      +  ++A  + ++
Sbjct: 541 ITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQ 600

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S GC P+ +TY++ I AY R G +  A  +  + + E   +D   +  L+  YG  G 
Sbjct: 601 MISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQ 660

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK--------------------RPWQVK 325
            D    V   M   G +P+  TY+ LL  +   K                      W++ 
Sbjct: 661 LDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIA 720

Query: 326 ------TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
                  ++++M + G  PN NTY+ L++   +  +      ++  MKE G+  S  ++N
Sbjct: 721 DFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHN 780

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC--RGKVSEAEAMFNEM 437
           +LL+ C  +G  +EA  + + M    +    +   S  + +C    +G   +AE +F  +
Sbjct: 781 SLLSSCCKLGMHEEALRLLDSMMEYNHL---AHLESYKLLVCGLFEQGNQEKAEEIFRSL 837

Query: 438 LEAGF 442
           L  G+
Sbjct: 838 LSCGY 842



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 1/216 (0%)

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
           + ++ +   +++ L  +    G  D    ++++M   GV+PN+I++N +++   +     
Sbjct: 148 HHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVV 207

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
             K  +  +   G   +  TY SL+  Y +     D   V+  M ++G   +   Y  L+
Sbjct: 208 VAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLI 267

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
               +VG  DEA E+F  MK  + C PD  T++ ++      GK +EA   F EM+E G 
Sbjct: 268 HGFCEVGKIDEALELFFQMK-EDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGI 326

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
           EPN++  T LI  + K  + D+ +  L+ + E G+ 
Sbjct: 327 EPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLV 362



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 155/389 (39%), Gaps = 40/389 (10%)

Query: 151 ALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL +F   ++   E  V  Y V +  F K   +D+   +   ML++G+    V F+ LI 
Sbjct: 314 ALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALID 373

Query: 209 --CAR--------------MNNL-PN------------------KAVEWFERMPSFGCDP 233
             C R              +N + PN                  +A+    +M      P
Sbjct: 374 GYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSP 433

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           + +TY+++I    +A  V+ A+ L+     + +  D   F   I      G  +    V+
Sbjct: 434 NLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVF 493

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
           E +K    + N   Y  L+D   +A++      ++K M   G  PN  T+  LL    + 
Sbjct: 494 ESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKE 553

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
              ED +S+   M +   + +V  Y  L+         D A  +F D   S  CQP+  T
Sbjct: 554 GKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRA-NMFLDQMISSGCQPNVVT 612

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           +++ I     +G++ EAE M  ++ E G   + F+   L+  YG   + D     L R+ 
Sbjct: 613 YTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMF 672

Query: 474 ELGITPDDRFCGCLLN--VMTQTPKEELG 500
           + G  P  +    LL   +  +  KE +G
Sbjct: 673 DTGCEPSRQTYSILLKHLIFEKYNKEGMG 701



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/393 (19%), Positives = 164/393 (41%), Gaps = 50/393 (12%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y V +  F +     +A + F++M++ G++P+  T++ LI         ++ +E  
Sbjct: 294 DVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEML 353

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G     + ++++ID Y + G +E A  + D  +  K   +   ++ LI  +   
Sbjct: 354 STMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRK 413

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            + D  + +  +M    + PN++TYN L+  + +A+       ++  M  +G  P+  T+
Sbjct: 414 KSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTF 473

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMK 402
            + +    +    E    V+  +KEK  + +  LY  L+   C    ++D A  +F+ M 
Sbjct: 474 CAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSD-AHLLFKRM- 531

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAM----------------------------- 433
             E C P+S TF+ ++      GKV +A ++                             
Sbjct: 532 LFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDF 591

Query: 434 ------FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
                  ++M+ +G +PN+   T+ I+ Y +  R  +    + ++ E GI  D      L
Sbjct: 592 DRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVL 651

Query: 488 LNVMTQTPKEELGKLVECVEKSNSKLGYVVKLL 520
           +N               C+ + +S  G ++++ 
Sbjct: 652 VNAYG------------CIGQLDSAFGVLIRMF 672



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/330 (19%), Positives = 122/330 (36%), Gaps = 62/330 (18%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A++L     K  A   V  Y + ++   +  D D+A    D M+  G +P+ VT++  I 
Sbjct: 559 AMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIK 618

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    +A E   ++   G   D+  Y  +++AYG  G ++ AFG+  R  +     
Sbjct: 619 AYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEP 678

Query: 269 DPNAFSTLIKL-----YGTAG---------------------NFDGCLNVYEEMKAIGVK 302
               +S L+K      Y   G                     +F+    ++E+M   G  
Sbjct: 679 SRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCV 738

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL-- 360
           PN+ TY+ L+  + + +       ++  M ++G+SP+ N + SLL +  +    E+ L  
Sbjct: 739 PNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRL 798

Query: 361 ---------------------------------SVYREMKEKGMQLSVTLYNTLLAMCAD 387
                                             ++R +   G      ++  LL     
Sbjct: 799 LDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKVLLDGLVR 858

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
            GY DE  ++  D+     C+  S T + +
Sbjct: 859 KGYVDECSQL-RDIMEKTGCRLHSDTHTML 887


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 149/332 (44%), Gaps = 4/332 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y   +    K +  D+AE +F  M+D GVKP+N T++ LI          + V+  E
Sbjct: 207 VVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLE 266

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M + G  PD  TY S+++       +       D         D + F+     Y   G
Sbjct: 267 KMSARGLKPDCYTYGSLLNYLCALSEMH---SFLDLMVENGLSPDHHIFNIFFSAYAKCG 323

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  ++++ +M+  G+ PN++ Y  L+D + +  R    +  + +M + G++PN   + 
Sbjct: 324 MIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFN 383

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL+         E    +  EM ++G+  +   +NTL+    +VG   E   +  D+   
Sbjct: 384 SLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLI-DLMEH 442

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              +PD+++++ +I+     G+  EAE +F+ M+  G  P      +L+  Y  A R DD
Sbjct: 443 VGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDD 502

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
                  +   G+TP       +L+ + QT +
Sbjct: 503 AYCLFREMLRKGVTPGVVTYNTILHGLFQTKR 534



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 173/377 (45%), Gaps = 29/377 (7%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFER 225
           ++N+    + KC  +DKA  +F+ M   G+ P+ V +  LI +  ++  + +  V+ F +
Sbjct: 311 IFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVK-FNQ 369

Query: 226 MPSFGCDPDALTYSSM------IDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLI 277
           M + G  P+ + ++S+      +D + RA   E+ + + D+       I PNA  F+TLI
Sbjct: 370 MINEGVTPNIVVFNSLVYGLCTVDKWERAE--ELVYEMLDQG------ICPNAVFFNTLI 421

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
                 G       + + M+ +GV+P+  +Y  L+     A R  + + ++  M   GLS
Sbjct: 422 CNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLS 481

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P   TY +LL  Y  A   +D   ++REM  KG+   V  YNT+L          EA E+
Sbjct: 482 PTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKEL 541

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           + +M +S   + D +T++ ++        V EA  MF  +   G + N+   T +I    
Sbjct: 542 YLNMINS-GTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALL 600

Query: 458 KAQRTDDVVRALNRLPELGITPDD---RFCGCLLNVMTQTPKEELGKLVECVEKSNSK-- 512
           K  R +D +     +P  G+ P+    R      N++ +   EE   L   +EK+ +   
Sbjct: 601 KGGRKEDAMDLFAAIPANGLVPNVVTYRLVA--ENLIEEGSLEEFDSLFSAMEKNGTAPN 658

Query: 513 ---LGYVVKLLLEEQDI 526
              L  +V+ LL   DI
Sbjct: 659 SQMLNALVRRLLHRGDI 675



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 134/324 (41%), Gaps = 39/324 (12%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           +K +     Y++ +    +   L  +   F  +L  G + +++  + L+          +
Sbjct: 92  IKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGE 151

Query: 219 AVE-WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           A++   +RMP  GC PD ++YS ++  +      E A  L     N+  R  P       
Sbjct: 152 AMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCP------- 204

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
                                    PN++TY  ++D + +A+   + + ++++M DNG+ 
Sbjct: 205 -------------------------PNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVK 239

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFE 396
           PN +TY  L+  Y      ++ + +  +M  +G++     Y +LL  +CA          
Sbjct: 240 PNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCA-----LSEMH 294

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
            F D+       PD   F+   +  +  G + +A  +FN+M + G  PN+    +LI   
Sbjct: 295 SFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDAL 354

Query: 457 GKAQRTDDVVRALNRLPELGITPD 480
            K  R DD     N++   G+TP+
Sbjct: 355 CKLGRVDDAEVKFNQMINEGVTPN 378



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 89/183 (48%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  +  +     +D A  LF +ML +GV P  VT++T++         ++A E +  
Sbjct: 485 VTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLN 544

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M + G   D  TY+ +++   ++  V+ AF ++    ++  +++   F+ +I      G 
Sbjct: 545 MINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGR 604

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  ++++  + A G+ PN++TY  + + +       +  +++  M  NG +PN     +
Sbjct: 605 KEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNA 664

Query: 346 LLR 348
           L+R
Sbjct: 665 LVR 667



 Score = 39.7 bits (91), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/89 (21%), Positives = 45/89 (50%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++  YN+ +    K   +D+A ++F  +  +G++ + +TF+ +I           A++ F
Sbjct: 553 DIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLF 612

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
             +P+ G  P+ +TY  + +     G++E
Sbjct: 613 AAIPANGLVPNVVTYRLVAENLIEEGSLE 641


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 164/370 (44%), Gaps = 36/370 (9%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y   +  F K  D DKA   + +MLDRG+ PD VT++++I+        +KA+E  
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  PD +TY+S++  Y  +G  + A G   + R++    D   +S L+      
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       +++ M   G+KP + TY  LL          ++  +   M  NG+ P+   +
Sbjct: 315 GRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVF 374

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+ AY +    +  + V+ +M+++G+  +   Y  ++ +    G  ++A   FE M  
Sbjct: 375 SILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM-I 433

Query: 404 SENCQPDSWTFSSMI-TICSC----------------------------------RGKVS 428
            E   P +  ++S+I  +C+C                                   G+V 
Sbjct: 434 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVI 493

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           E+E +F  M+  G +PN+    +LI  Y  A + D+ ++ L+ +  +G+ P+      L+
Sbjct: 494 ESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 553

Query: 489 NVMTQTPKEE 498
           N   +  + E
Sbjct: 554 NGYCKISRME 563



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 4/293 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLD---RGVKPDNVTFSTLISCARMNNLPNKAVE 221
           V  YN+ +K         +A  L   M D    G  PD V+++T+I+        +KA  
Sbjct: 158 VFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYS 217

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            +  M   G  PD +TY+S+I A  +A  ++ A  + +         D   +++++  Y 
Sbjct: 218 TYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYC 277

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
           ++G     +   ++M++ GV+P+++TY+ L+D + +  R  + + I+  MT  GL P   
Sbjct: 278 SSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEIT 337

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +LL+ Y       +   +   M   G+     +++ L+   A  G  D+A  +F  M
Sbjct: 338 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKM 397

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           +  +   P++ T+ ++I I    G+V +A   F +M++ G  P   V  SLI 
Sbjct: 398 R-QQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIH 449



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 174/379 (45%), Gaps = 2/379 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           E+  Y   ++ +     L +   L D M+  G+ PD+  FS LI         ++A+  F
Sbjct: 335 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVF 394

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M   G +P+A+TY ++I    ++G VE A   +++  +E        +++LI    T 
Sbjct: 395 SKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTC 454

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
             ++    +  EM   G+  N I +N+++D+  +  R  + + +++ M   G+ PN  TY
Sbjct: 455 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITY 514

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+  Y  A   ++ + +   M   G++ +   Y+TL+     +   ++A  +F++M+S
Sbjct: 515 NTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S    PD  T++ ++       + + A+ ++  + E+G +  L     ++    K + TD
Sbjct: 575 S-GVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTD 633

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL-GYVVKLLLE 522
           D ++    L  + +  + R    +++ + +  + +  K +     SN  +  Y    L+ 
Sbjct: 634 DALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMA 693

Query: 523 EQDIEGDFKKEATELFNSI 541
           E  I     +E  +LF S+
Sbjct: 694 ENIIGQGLLEELDQLFLSM 712



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 145/365 (39%), Gaps = 46/365 (12%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFS-TLISCARMNNLPNKAVEWFERMPSFGCD---PDALT 237
           + A  +FD++L RG        +  L   AR  + P  AV  + RM   G D   PD  T
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVAR--DSPAAAVSRYNRMARAGADEVTPDLCT 89

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEM 296
           Y  +I    RAG +++ F        + +R+D  AF+ L+K L       D    V   M
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 297 KAIGVKPNMITYNNLL--------------------DTMGRAKRPWQVK----------- 325
             +G  PN+ +YN LL                    D  G    P  V            
Sbjct: 150 TELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKE 209

Query: 326 -------TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
                  + Y EM D G+ P+  TY S++ A  +A+  +  + V   M + G+      Y
Sbjct: 210 GDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTY 269

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           N++L      G   EA    + M+S +  +PD  T+S ++      G+  EA  +F+ M 
Sbjct: 270 NSILHGYCSSGQPKEAIGFLKKMRS-DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT 328

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
           + G +P +    +L+Q Y       ++   L+ +   GI PD      L+    +  K +
Sbjct: 329 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVD 388

Query: 499 LGKLV 503
              LV
Sbjct: 389 QAMLV 393



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 12/192 (6%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS----CARMN 213
           ++     VI YN  +  +     +D+A +L   M+  G+KP+ VT+STLI+     +RM 
Sbjct: 504 RIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRME 563

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           +    A+  F+ M S G  PD +TY+ ++    +      A  LY R      +I+ + +
Sbjct: 564 D----ALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTY 619

Query: 274 STLIKLYGTAGN--FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           +  I L+G   N   D  L +++ +  + +K    T+N ++D + +  R  + K ++   
Sbjct: 620 N--IILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 677

Query: 332 TDNGLSPNWNTY 343
           + NGL PN+ TY
Sbjct: 678 SSNGLVPNYWTY 689


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 150/316 (47%), Gaps = 2/316 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  +  + K   ++ A  LFD M   GV P+ VT +TL+     +   N AVE+F  
Sbjct: 417 VTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNE 476

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G   +A+TY+++I A+    N+E A  L+D         D   + TLI     AG 
Sbjct: 477 MQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGK 536

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D    V  +MK  G  P+++++N L++   R  +  +   + KEM + G+ P+  TY +
Sbjct: 537 LDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNT 596

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSS 404
           L+  + +         + ++M ++G+  +V  Y  L+ A C + G  DEA +IF DM S+
Sbjct: 597 LISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLN-GNLDEAMKIFRDMSST 655

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               P++  ++ +I     + +V  A ++ ++M   G +PN     ++ +   +      
Sbjct: 656 SKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSK 715

Query: 465 VVRALNRLPELGITPD 480
               ++R+ E    PD
Sbjct: 716 AFELMDRMTEHACNPD 731



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 151/342 (44%), Gaps = 40/342 (11%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           KL    E    N  +    + R+  +   L  +M +  ++P+ VTF  LI+        +
Sbjct: 298 KLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVD 357

Query: 218 KAVEWFERMPS-----FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
           +A+E FE+M       F  +PD +TY+++ID   + G  E   GL +R R++        
Sbjct: 358 EALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPR------ 411

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
                           C+            PN +TYN L+D   +A      + ++ +M 
Sbjct: 412 ----------------CM------------PNTVTYNCLIDGYCKASMIEAARELFDQMN 443

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
            +G+ PN  T  +L+    +       +  + EM+ KG++ +   Y  L+    +V   +
Sbjct: 444 KDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIE 503

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           +A E+F++M  +  C PD+  + ++I+  S  GK+  A  + ++M EAGF P++     L
Sbjct: 504 KAMELFDEMLEA-GCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVL 562

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           I  + +  + D+    L  +   GI PD      L++  ++T
Sbjct: 563 INGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKT 604



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 147/317 (46%), Gaps = 7/317 (2%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNL 215
           NK      V+  N  +    K   ++ A   F++M  +G+K + VT++ LI     +NN+
Sbjct: 443 NKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNI 502

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
             KA+E F+ M   GC PDA+ Y ++I    +AG ++ A  +  + +   +  D  +F+ 
Sbjct: 503 -EKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNV 561

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LI  +      D    + +EM+  G+KP+ +TYN L+    +         + K+M   G
Sbjct: 562 LINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEG 621

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG-MQLSVTLYNTLLAMCADVGYTDEA 394
           L P   TY +L+ AY      ++ + ++R+M     +  +  +YN L+         D A
Sbjct: 622 LVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLA 681

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF---VLTS 451
             + +DMK  +  +P++ TF++M      +  +S+A  + + M E    P+     +LT 
Sbjct: 682 LSLMDDMK-VKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTE 740

Query: 452 LIQCYGKAQRTDDVVRA 468
            +   G+  +    V+ 
Sbjct: 741 WLSAVGETAKLKSFVQG 757



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 111/243 (45%), Gaps = 11/243 (4%)

Query: 243 DAYGRAGNVEMAFGLYDR-ARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           D  GRA + E   GL  + A +E +   PN+   + LI     +G  D   +V   +  +
Sbjct: 243 DKVGRAVDEEEIVGLVSKFAEHEVF---PNSIWLTQLISRLCRSGRTDRAWDVLHGLMKL 299

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G      + N LL  +GRA+   ++ T+  EM +  + PN  T+  L+    + R  ++ 
Sbjct: 300 GGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEA 359

Query: 360 LSVYREM---KEKG--MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
           L V+ +M   +  G  ++  V  YNTL+     VG  +E   + E M+S   C P++ T+
Sbjct: 360 LEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTY 419

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + +I        +  A  +F++M + G  PN+  L +L+    K  R +  V   N +  
Sbjct: 420 NCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQG 479

Query: 475 LGI 477
            G+
Sbjct: 480 KGL 482



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 100/464 (21%), Positives = 197/464 (42%), Gaps = 46/464 (9%)

Query: 68  GKTGSSPKSYIWVNPKSP-RASKLKEKSYDTRY-------NSLVKLAADLDSCSATEDDV 119
           G T  + K + WV   SP + S L   + +  +       NS  KL  DL   S +    
Sbjct: 98  GSTAKALKFFNWVQANSPCQDSPLLSFTLEAVFEHASREPNSHNKLL-DLFKTSKSHKIP 156

Query: 120 FSV------LRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMK 173
            SV      +RC G   +  +  ++ N +      +  LT+  N        IL +V   
Sbjct: 157 LSVNAATLLIRCFGRAQMVDESFLVYNELC----PSRRLTHIRN--------ILIDV--- 201

Query: 174 VFRKCRDLDKAERLFDDMLDRGVK--PDNVTFSTLISCARMNNLPNKAVEWFE------R 225
           +FRK R +D A  L D+ML    +  P++ T   + S     +   +AV+  E      +
Sbjct: 202 LFRKGR-VDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSK 260

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
                  P+++  + +I    R+G  + A+ +          ++  + + L+   G A  
Sbjct: 261 FAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRARE 320

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT---DNG--LSPNW 340
           F     +  EMK + ++PN++T+  L++ + + +R  +   ++++M     NG  + P+ 
Sbjct: 321 FKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDV 380

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL-YNTLLAMCADVGYTDEAFEIFE 399
            TY +L+    +    E+ L +   M+ +   +  T+ YN L+         + A E+F+
Sbjct: 381 ITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFD 440

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
            M + +   P+  T ++++      G+++ A   FNEM   G + N    T+LI+ +   
Sbjct: 441 QM-NKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNV 499

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 503
              +  +   + + E G +PD      L++ ++Q  K +    V
Sbjct: 500 NNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFV 543


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 145/348 (41%), Gaps = 41/348 (11%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +  F K    D  +R F DM+  G +P   T++ +I C         A   FE M  
Sbjct: 231 NGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKF 290

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  PD +TY+SMID +G+ G ++     ++  ++     D   ++ LI  +   G    
Sbjct: 291 RGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPI 350

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L  Y EMK  G+KPN+++Y+ L+D   +     Q    Y +M   GL PN  TY SL+ 
Sbjct: 351 GLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 410

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A  +     D   +  EM + G++ +V  Y  L+    D           E MK      
Sbjct: 411 ANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDA----------ERMK------ 454

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
                               EAE +F +M  AG  PNL    +LI  + KA+  D  +  
Sbjct: 455 --------------------EAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALEL 494

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV-----ECVEKSNS 511
           LN L   GI PD    G  +  +    K E  K+V     EC  K+NS
Sbjct: 495 LNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANS 542



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 150/318 (47%), Gaps = 3/318 (0%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A   V  YN+ +    K  D++ A  LF++M  RG+ PD VT++++I         +  V
Sbjct: 258 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 317

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
            +FE M    C+PD +TY+++I+ + + G + +    Y   +    + +  ++STL+  +
Sbjct: 318 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAF 377

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G     +  Y +M+ +G+ PN  TY +L+D   +         +  EM   G+  N 
Sbjct: 378 CKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNV 437

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY +L+     A   ++   ++ +M   G+  ++  YN L+         D A E+  +
Sbjct: 438 VTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNE 497

Query: 401 MKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +K     +PD   + + I  +CS   K+  A+ + NEM E G + N  + T+L+  Y K+
Sbjct: 498 LK-GRGIKPDLLLYGTFIWGLCSLE-KIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKS 555

Query: 460 QRTDDVVRALNRLPELGI 477
               + +  L+ + EL I
Sbjct: 556 GNPTEGLHLLDEMKELDI 573



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 156/352 (44%), Gaps = 35/352 (9%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI YN  +  F K   L      + +M   G+KP+ V++STL+       +  +A++++
Sbjct: 331 DVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFY 390

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF-----------------------GLYDR 260
             M   G  P+  TY+S+IDA  + GN+  AF                       GL D 
Sbjct: 391 VDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDA 450

Query: 261 ARNEKWR----------IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
            R ++            + PN  +++ LI  +  A N D  L +  E+K  G+KP+++ Y
Sbjct: 451 ERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLY 510

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
              +  +   ++    K +  EM + G+  N   Y +L+ AY ++    + L +  EMKE
Sbjct: 511 GTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKE 570

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
             ++++V  +  L+          +A + F  + +    Q ++  F++MI       +V 
Sbjct: 571 LDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVE 630

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            A  +F +M++ G  P+    TSL+    K     + +   +++ E+G+  D
Sbjct: 631 AATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLD 682



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 122/263 (46%), Gaps = 14/263 (5%)

Query: 220 VEWFER---MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST- 275
           V W  R   +P FG   DAL +S +ID     G +E A   + + +  ++R+ P   S  
Sbjct: 180 VLWSTRNVCVPGFGV-FDAL-FSVLIDL----GMLEEAIQCFSKMK--RFRVFPKTRSCN 231

Query: 276 -LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            L+  +   G  D     +++M   G +P + TYN ++D M +       + +++EM   
Sbjct: 232 GLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFR 291

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           GL P+  TY S++  +G+    +DT+  + EMK+   +  V  YN L+      G     
Sbjct: 292 GLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIG 351

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            E + +MK +   +P+  ++S+++      G + +A   + +M   G  PN +  TSLI 
Sbjct: 352 LEFYREMKGN-GLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 410

Query: 455 CYGKAQRTDDVVRALNRLPELGI 477
              K     D  R  N + ++G+
Sbjct: 411 ANCKIGNLSDAFRLGNEMLQVGV 433



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 111/251 (44%), Gaps = 16/251 (6%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI--SCARMNNLPNKAVEWFER 225
           YN  +  F K +++D+A  L +++  RG+KPD + + T I   C+       K V     
Sbjct: 475 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVV--MNE 532

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI------KL 279
           M   G   ++L Y++++DAY ++GN      L D  +     +    F  LI      KL
Sbjct: 533 MKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKL 592

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
              A ++   ++        G++ N   +  ++D + +  +     T++++M   GL P+
Sbjct: 593 VSKAVDYFNRIS-----NDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPD 647

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
              Y SL+    +     + L++  +M E GM+L +  Y +L+   +      +A    E
Sbjct: 648 RTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLE 707

Query: 400 DMKSSENCQPD 410
           +M   E   PD
Sbjct: 708 EM-IGEGIHPD 717



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 93/186 (50%), Gaps = 1/186 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++Y   M  + K  +  +   L D+M +  ++   VTF  LI     N L +KAV++F R
Sbjct: 543 LIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNR 602

Query: 226 MPS-FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           + + FG   +A  +++MID   +   VE A  L+++   +    D  A+++L+      G
Sbjct: 603 ISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQG 662

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N    L + ++M  IG+K +++ Y +L+  +    +  + ++  +EM   G+ P+     
Sbjct: 663 NVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCI 722

Query: 345 SLLRAY 350
           S+L+ +
Sbjct: 723 SVLKKH 728



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 2/164 (1%)

Query: 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDML-DRGVKPDNVT 202
           NP T  L L     +L     V+ + V +    K + + KA   F+ +  D G++ +   
Sbjct: 557 NP-TEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAI 615

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           F+ +I     +N    A   FE+M   G  PD   Y+S++D   + GNV  A  L D+  
Sbjct: 616 FTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMA 675

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
               ++D  A+++L+             +  EEM   G+ P+ +
Sbjct: 676 EIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEV 719


>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 755

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 184/419 (43%), Gaps = 52/419 (12%)

Query: 98  RYNSLVKLAADLDSCSATEDDVF--SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYF 155
           R+   V++   ++S   T D +   + ++  G     +  V +L+ M     A       
Sbjct: 300 RWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVA------- 352

Query: 156 TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
                     I +N  +    K    +KA  L  ++   G+ PD  +F++ I+    +  
Sbjct: 353 -------PNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGR 405

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD---------------- 259
             +A+E  + MP+    PDA++Y+S I+A G+ G  EMA  L                  
Sbjct: 406 WKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNI 465

Query: 260 --RARNEKWR---------------IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
             RA  E+ R               + PN   +++ IK  G  G ++  L++  +MK + 
Sbjct: 466 AIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELA 525

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           + P+ ITYN+ +    +  R  +   + +EM   GL+P+  +Y + + AYG+    E  +
Sbjct: 526 MTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAV 585

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            + R+M  KG+  +V  YN+++  C   G  ++A ++ +++K +    PD  +++  I+ 
Sbjct: 586 ELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETA-VAPDLMSYNLAISA 644

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           C  RG+  EA  +  EM   G  P++   TS I+        +  +  LN +   G++P
Sbjct: 645 CGKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVSP 703



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 153/321 (47%), Gaps = 5/321 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAV 220
           S  V  YN  ++        + A  L  +M DR V PD +++++ I +C R      + +
Sbjct: 177 SPNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQW-ERVI 235

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
                MPS G  PDA+TY+S+I   G+ G  + A  +      +    +  +++  I+  
Sbjct: 236 GLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRAC 295

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT-IYKEMTDNGLSPN 339
           G +G +   + V  +M++ GV P++I+Y+  +   G   + W+    +  EM   G++PN
Sbjct: 296 GRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQ-WETSVDLLDEMAGRGVAPN 354

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
              + S + A G+    E  + + RE+   G+    T +N+ +A C   G   EA E+ +
Sbjct: 355 TIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLK 414

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +M  ++  +PD+ +++S I  C   G+   A  +  +M   G  PN+      I+  G+ 
Sbjct: 415 EMP-AKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGER 473

Query: 460 QRTDDVVRALNRLPELGITPD 480
            R  + +  L ++P  G+TP+
Sbjct: 474 GRWQEGLELLRQMPAQGLTPN 494



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 147/318 (46%), Gaps = 3/318 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF-STLISCARMNNLPNKAVEW 222
           +VI Y+  +K        + +  L D+M  RGV P+ + F S +++C +      KAVE 
Sbjct: 319 DVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQW-EKAVEL 377

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
              + + G  PDA +++S I A  ++G  + A  L      ++ + D  ++++ I+  G 
Sbjct: 378 LREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGK 437

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G ++  L +  +M   G+ PN+I+ N  +   G   R  +   + ++M   GL+PN  T
Sbjct: 438 GGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVIT 497

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y S ++  G+    E  L +  +MKE  M      YN+ +A C+  G   EA  +  +M 
Sbjct: 498 YNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMP 557

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
             +   PD  ++++ I      G+   A  +  +M   G  PN+    S+I+  G+    
Sbjct: 558 -GQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEW 616

Query: 463 DDVVRALNRLPELGITPD 480
           +  +  L  L E  + PD
Sbjct: 617 EKALDLLKELKETAVAPD 634



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 145/315 (46%), Gaps = 1/315 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I YN  ++   K    + A  L   M  +G+ P+ ++ +  I          + +E  
Sbjct: 424 DAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELL 483

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +MP+ G  P+ +TY+S I   G+ G  E A  L  + +      D   +++ I      
Sbjct: 484 RQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKR 543

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G +   + +  EM   G+ P++I+Y   +D  G+  +  +   + ++M   GL+PN  TY
Sbjct: 544 GRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITY 603

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S+++A GR    E  L + +E+KE  +   +  YN  ++ C   G  +EA ++  +M  
Sbjct: 604 NSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREMP- 662

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +E   PD  +++S I  C+  G+  +A  + N M   G  P     +  I+  GK  R +
Sbjct: 663 AEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRRE 722

Query: 464 DVVRALNRLPELGIT 478
           + V  +  + + G++
Sbjct: 723 EAVCLVREMAQRGLS 737



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 140/295 (47%), Gaps = 3/295 (1%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP-SFGCDPDALTYSSMIDAY 245
           + D+M + GV   +   + + +C R      KA+E    +P   G  P+   Y+S I+A 
Sbjct: 132 ILDEMKEGGVVCAHSYTTAITTCGRQGQW-EKALELLREIPEQEGVSPNVFCYNSAIEAC 190

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
           G     E+A  L     + +   D  ++++ IK  G  G ++  + +  EM ++G+ P+ 
Sbjct: 191 GSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDA 250

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           ITYN+++   G+  +  +  ++  EM+  GL+P   +Y   +RA GR+   ++ + V R+
Sbjct: 251 ITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQ 310

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M+ +G+   V  Y+  +  C   G  + + ++ ++M +     P++  F+S I  C   G
Sbjct: 311 MESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEM-AGRGVAPNTIHFNSAIVACGKGG 369

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  +A  +  E+   G  P+     S I    K+ R  + +  L  +P   + PD
Sbjct: 370 QWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPD 424



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 2/224 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L     +L  + + I YN  +    K     +A  L  +M  +G+ PD ++++  I 
Sbjct: 514 ALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAID 573

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               N    +AVE   +MP+ G  P+ +TY+S+I A GR G  E A  L    +      
Sbjct: 574 AYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAP 633

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTI 327
           D  +++  I   G  G ++  L++  EM A G+ P++I+Y + +     A+  W+    +
Sbjct: 634 DLMSYNLAISACGKRGRWEEALDLLREMPAEGLTPDVISYTSAIRAC-NAEGEWEKALGL 692

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
              M  +G+SP   +Y+  + A G+    E+ + + REM ++G+
Sbjct: 693 LNLMGAHGVSPTATSYSLAIEACGKGGRREEAVCLVREMAQRGL 736



 Score = 40.0 bits (92), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 9/146 (6%)

Query: 343 YASLLRAYGRA------RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
           ++S +R + R+      + GE T  V  +   +    +       L   A  G   EA  
Sbjct: 72  HSSPMRRHARSCCRAAPKLGEATAVVTMQGAARANSRAARKLQAALREAATTGKWREALG 131

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQC 455
           I ++MK  E     + ++++ IT C  +G+  +A  +  E+ E  G  PN+F   S I+ 
Sbjct: 132 ILDEMK--EGGVVCAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNVFCYNSAIEA 189

Query: 456 YGKAQRTDDVVRALNRLPELGITPDD 481
            G   + +  V  L  + +  + PD+
Sbjct: 190 CGSGDQWEIAVSLLREMADREVVPDE 215


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 166/339 (48%), Gaps = 5/339 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWF 223
           V+ YN  +  + K + +D+A +L   M   G++P+ +T++ +I+   R+  +   +    
Sbjct: 238 VVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLA 297

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  PD +TY+++++ Y + GN   A  L+          D   +++LI     A
Sbjct: 298 E-MDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKA 356

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           GN +  +  +++M   G++PN +TY +L++   +     +   I+ EM  +G  P   TY
Sbjct: 357 GNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTY 416

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +LL  +  +   E+ + + R M+ KG+   V  Y+T++A        D AF++  +M  
Sbjct: 417 NALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEM-V 475

Query: 404 SENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            +   PD+ T+SS+I  +C  R +++EA  +F EML     P+ F  TSLI  Y K    
Sbjct: 476 EKGVSPDAITYSSLIQGLCEQR-RLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDL 534

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
           ++ +   + + + G  PD      L+N + +  +    K
Sbjct: 535 NEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAK 573



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 154/329 (46%), Gaps = 1/329 (0%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
            S  V  YN+ ++ F    +L+   R F++M      P+ VT++T+I         ++A 
Sbjct: 199 VSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAF 258

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           +    M   G +P+ LTY+ +I+   R G +E   G+      + +  D   ++TL+  Y
Sbjct: 259 KLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGY 318

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              GNF   L ++ EM   G+ P+++TY +L++TM +A    +    + +M   GL PN 
Sbjct: 319 CKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNG 378

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY SL+  + +  + ++   ++ EM   G   ++  YN LL      G  +EA  +   
Sbjct: 379 VTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRG 438

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M+  +   PD  ++S++I       ++  A  M  EM+E G  P+    +SLIQ   + +
Sbjct: 439 ME-GKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQR 497

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLN 489
           R ++       +    + PD+     L+N
Sbjct: 498 RLNEACDLFQEMLNKSLLPDEFTYTSLIN 526



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 143/303 (47%), Gaps = 6/303 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           ++KA  + D     G  P  ++++ ++ S  R       A + +  M + G   +  +Y+
Sbjct: 148 IEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYN 207

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMK 297
            +I  +  AGN+EM    ++    E+ R  PN   ++T+I  Y      D    +   M 
Sbjct: 208 ILIRGFCAAGNLEMGLRFFEEM--ERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMG 265

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
             G++PN++TYN +++ + R  R  +   +  EM   G +P+  TY +L+  Y +     
Sbjct: 266 LEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFH 325

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
             L ++ EM   G+   V  Y +L+      G  + A E F+ M      +P+  T++S+
Sbjct: 326 QALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMH-VRGLRPNGVTYTSL 384

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I   S +G + EA  +++EM+ +GF P +    +L+  +  + R ++ +  L  +   G+
Sbjct: 385 INGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGL 444

Query: 478 TPD 480
           +PD
Sbjct: 445 SPD 447



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 151/331 (45%), Gaps = 16/331 (4%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y   +    K  +L++A   FD M  RG++P+ VT+++LI+        ++A   +
Sbjct: 342 DVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIW 401

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   G  P  +TY+++++ +  +G +E A GL      +    D  ++ST+I  +   
Sbjct: 402 DEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRY 461

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D    +  EM   GV P+ ITY++L+  +   +R  +   +++EM +  L P+  TY
Sbjct: 462 QELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTY 521

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            SL+  Y +     + L+++ EM +KG       YN L+        T EA  +   +  
Sbjct: 522 TSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFY 581

Query: 404 SENCQPDSWTFSSMITICS---------------CRGKVSEAEAMFNEMLEAGFEPNLFV 448
            E+  P+  T+ ++I  CS                +G ++EA+ +F  M++   +PN  V
Sbjct: 582 DESI-PNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAV 640

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
              +I  + +        +    + + G  P
Sbjct: 641 YNVIIHGHCRDGNVHKAHKLYKEMVDFGFIP 671



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 142/314 (45%), Gaps = 61/314 (19%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V+ Y+  +  F + ++LD+A ++  +M+++GV PD +T+S+LI         N+A +
Sbjct: 445 SPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACD 504

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F+ M +    PD  TY+S+I+ Y + G++  A  L+D                      
Sbjct: 505 LFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHD---------------------- 542

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                        EM   G  P+ +TYN L++ + +  R  + K +  ++  +   PN  
Sbjct: 543 -------------EMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGI 589

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +L+ +     +     SV   +K   M+                G  +EA ++FE M
Sbjct: 590 TYDTLIESCSDIEFK----SVVALIKGFCMK----------------GLMNEADQVFESM 629

Query: 402 KSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---G 457
               N +P+   ++ +I    CR G V +A  ++ EM++ GF P+   + +L++     G
Sbjct: 630 -IKRNQKPNEAVYNVIIH-GHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEG 687

Query: 458 KAQRTDDVVRALNR 471
             ++ + V+R + R
Sbjct: 688 MDEQLNLVIRDILR 701


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 145/348 (41%), Gaps = 41/348 (11%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +  F K    D  +R F DM+  G +P   T++ +I C         A   FE M  
Sbjct: 99  NGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKF 158

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  PD +TY+SMID +G+ G ++     ++  ++     D   ++ LI  +   G    
Sbjct: 159 RGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPI 218

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L  Y EMK  G+KPN+++Y+ L+D   +     Q    Y +M   GL PN  TY SL+ 
Sbjct: 219 GLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 278

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A  +     D   +  EM + G++ +V  Y  L+    D           E MK      
Sbjct: 279 ANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDA----------ERMK------ 322

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
                               EAE +F +M  AG  PNL    +LI  + KA+  D  +  
Sbjct: 323 --------------------EAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALEL 362

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV-----ECVEKSNS 511
           LN L   GI PD    G  +  +    K E  K+V     EC  K+NS
Sbjct: 363 LNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANS 410



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 150/318 (47%), Gaps = 3/318 (0%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A   V  YN+ +    K  D++ A  LF++M  RG+ PD VT++++I         +  V
Sbjct: 126 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 185

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
            +FE M    C+PD +TY+++I+ + + G + +    Y   +    + +  ++STL+  +
Sbjct: 186 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAF 245

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G     +  Y +M+ +G+ PN  TY +L+D   +         +  EM   G+  N 
Sbjct: 246 CKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNV 305

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY +L+     A   ++   ++ +M   G+  ++  YN L+         D A E+  +
Sbjct: 306 VTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNE 365

Query: 401 MKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +K     +PD   + + I  +CS   K+  A+ + NEM E G + N  + T+L+  Y K+
Sbjct: 366 LK-GRGIKPDLLLYGTFIWGLCSLE-KIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKS 423

Query: 460 QRTDDVVRALNRLPELGI 477
               + +  L+ + EL I
Sbjct: 424 GNPTEGLHLLDEMKELDI 441



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 156/352 (44%), Gaps = 35/352 (9%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI YN  +  F K   L      + +M   G+KP+ V++STL+       +  +A++++
Sbjct: 199 DVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFY 258

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF-----------------------GLYDR 260
             M   G  P+  TY+S+IDA  + GN+  AF                       GL D 
Sbjct: 259 VDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDA 318

Query: 261 ARNEKWR----------IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
            R ++            + PN  +++ LI  +  A N D  L +  E+K  G+KP+++ Y
Sbjct: 319 ERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLY 378

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
              +  +   ++    K +  EM + G+  N   Y +L+ AY ++    + L +  EMKE
Sbjct: 379 GTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKE 438

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
             ++++V  +  L+          +A + F  + +    Q ++  F++MI       +V 
Sbjct: 439 LDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVE 498

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            A  +F +M++ G  P+    TSL+    K     + +   +++ E+G+  D
Sbjct: 499 AATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLD 550



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 122/263 (46%), Gaps = 14/263 (5%)

Query: 220 VEWFER---MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST- 275
           V W  R   +P FG   DAL +S +ID     G +E A   + + +  ++R+ P   S  
Sbjct: 48  VLWSTRNVCVPGFGV-FDAL-FSVLIDL----GMLEEAIQCFSKMK--RFRVFPKTRSCN 99

Query: 276 -LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            L+  +   G  D     +++M   G +P + TYN ++D M +       + +++EM   
Sbjct: 100 GLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFR 159

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           GL P+  TY S++  +G+    +DT+  + EMK+   +  V  YN L+      G     
Sbjct: 160 GLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIG 219

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            E + +MK +   +P+  ++S+++      G + +A   + +M   G  PN +  TSLI 
Sbjct: 220 LEFYREMKGN-GLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 278

Query: 455 CYGKAQRTDDVVRALNRLPELGI 477
              K     D  R  N + ++G+
Sbjct: 279 ANCKIGNLSDAFRLGNEMLQVGV 301



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 93/186 (50%), Gaps = 1/186 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++Y   M  + K  +  +   L D+M +  ++   VTF  LI     N L +KAV++F R
Sbjct: 411 LIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNR 470

Query: 226 MPS-FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           + + FG   +A  +++MID   +   VE A  L+++   +    D  A+++L+      G
Sbjct: 471 ISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQG 530

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N    L + ++M  IG+K +++ Y +L+  +    +  + ++  +EM   G+ P+     
Sbjct: 531 NVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCI 590

Query: 345 SLLRAY 350
           S+L+ +
Sbjct: 591 SVLKKH 596



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 111/273 (40%), Gaps = 50/273 (18%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI--SCARMNNLPNKAVEWFER 225
           YN  +  F K +++D+A  L +++  RG+KPD + + T I   C+       K V     
Sbjct: 343 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVV--MNE 400

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI------KL 279
           M   G   ++L Y++++DAY ++GN      L D  +     +    F  LI      KL
Sbjct: 401 MKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKL 460

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
              A ++   ++        G++ N   +  ++D + +  +     T++++M   GL P+
Sbjct: 461 VSKAVDYFNRIS-----NDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPD 515

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL----------------- 382
              Y SL+    +     + L++  +M E GM+L +  Y +L+                 
Sbjct: 516 RTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLE 575

Query: 383 -----------AMCADV-------GYTDEAFEI 397
                       +C  V       G  DEA E+
Sbjct: 576 EMIGEGIHPDEVLCISVLKKHYELGCIDEAVEL 608



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 2/164 (1%)

Query: 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDML-DRGVKPDNVT 202
           NP T  L L     +L     V+ + V +    K + + KA   F+ +  D G++ +   
Sbjct: 425 NP-TEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAI 483

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           F+ +I     +N    A   FE+M   G  PD   Y+S++D   + GNV  A  L D+  
Sbjct: 484 FTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMA 543

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
               ++D  A+++L+             +  EEM   G+ P+ +
Sbjct: 544 EIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEV 587


>gi|356536414|ref|XP_003536733.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Glycine max]
          Length = 553

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 179/392 (45%), Gaps = 45/392 (11%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           + K  D + AE++   M   G  P+ V+ + L+         N A   F RM  +G +P 
Sbjct: 145 YGKLGDFNGAEKVLGLMNKNGYVPNVVSQTALMEAYGKGGRYNNAEAIFRRMQKWGPEPS 204

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEK---WRIDPNAFSTLIKLYGTAGNFDGCLN 291
           A TY  ++  + +      A  L+D   N++    + D   F+ +I +Y  AG+++    
Sbjct: 205 AFTYQIILKTFVQGNKYREAEELFDNLLNDENSPLKPDQKMFNMMIYMYKKAGSYEKARK 264

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
            +  M   G++   +TYN+L+      K   +V  IY +M    L P+  +YA L+ AYG
Sbjct: 265 TFALMAERGIQQTTVTYNSLMSFETDYK---EVSNIYDQMQRADLRPDVVSYALLVSAYG 321

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           +AR  E+ L+V+ EM + G++ +   YN LL   +  G  ++A  +F+ M+  +   PD 
Sbjct: 322 KARREEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQAQTVFKSMRR-DRYFPDL 380

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF------------------------ 447
            ++++M++       +  AE  F  +++  FEPN+                         
Sbjct: 381 CSYTTMLSAYVNADDMEGAEKFFKRLIQDDFEPNVVTYGTLIKGYAKINDLEMVMKKYEE 440

Query: 448 -----------VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV-MTQTP 495
                      +LT+++  YGK+   D  V     +   GI PD +    LL++  T   
Sbjct: 441 MLVRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEMESNGIPPDQKAKNVLLSLPKTDEE 500

Query: 496 KEELGKLVECVEKSN--SKLGYVVKLLLEEQD 525
           +EE  +LV    ++N  SK+  +VKL+ E+++
Sbjct: 501 REEANELVGHFSENNSLSKVNGIVKLVDEDEE 532



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 130/277 (46%), Gaps = 12/277 (4%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC----ARMNNLPNKAVEW 222
           ++N+ + +++K    +KA + F  M +RG++   VT+++L+S       ++N+       
Sbjct: 245 MFNMMIYMYKKAGSYEKARKTFALMAERGIQQTTVTYNSLMSFETDYKEVSNI------- 297

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           +++M      PD ++Y+ ++ AYG+A   E A  +++   +   R    A++ L+  +  
Sbjct: 298 YDQMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFSI 357

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           +G  +    V++ M+     P++ +Y  +L     A      +  +K +  +   PN  T
Sbjct: 358 SGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYVNADDMEGAEKFFKRLIQDDFEPNVVT 417

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +L++ Y +    E  +  Y EM  +G++ + T+  T++      G  D A   F++M+
Sbjct: 418 YGTLIKGYAKINDLEMVMKKYEEMLVRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEME 477

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
           S+    PD    + ++++     +  EA  +     E
Sbjct: 478 SN-GIPPDQKAKNVLLSLPKTDEEREEANELVGHFSE 513



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 89/184 (48%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y + +  + K R  ++A  +F++MLD GV+P    ++ L+    ++ +  +A   F
Sbjct: 309 DVVSYALLVSAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQAQTVF 368

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M      PD  +Y++M+ AY  A ++E A   + R   + +  +   + TLIK Y   
Sbjct: 369 KSMRRDRYFPDLCSYTTMLSAYVNADDMEGAEKFFKRLIQDDFEPNVVTYGTLIKGYAKI 428

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            + +  +  YEEM   G+K N      ++D  G++         +KEM  NG+ P+    
Sbjct: 429 NDLEMVMKKYEEMLVRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEMESNGIPPDQKAK 488

Query: 344 ASLL 347
             LL
Sbjct: 489 NVLL 492



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 103/230 (44%), Gaps = 7/230 (3%)

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           W      F  LI  YG  G+F+G   V   M   G  PN+++   L++  G+  R    +
Sbjct: 131 WDFGKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYVPNVVSQTALMEAYGKGGRYNNAE 190

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
            I++ M   G  P+  TY  +L+ +    + R  E+        +   ++    ++N ++
Sbjct: 191 AIFRRMQKWGPEPSAFTYQIILKTFVQGNKYREAEELFDNLLNDENSPLKPDQKMFNMMI 250

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            M    G  ++A + F  M +    Q  + T++S+++  +   +VS    ++++M  A  
Sbjct: 251 YMYKKAGSYEKARKTFALM-AERGIQQTTVTYNSLMSFETDYKEVSN---IYDQMQRADL 306

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            P++     L+  YGKA+R ++ +     + + G+ P  +    LL+  +
Sbjct: 307 RPDVVSYALLVSAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFS 356


>gi|227202654|dbj|BAH56800.1| AT2G41720 [Arabidopsis thaliana]
          Length = 815

 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 164/330 (49%), Gaps = 1/330 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   M ++    +++    +F+ M+  G+KP+ V+++ L+    ++ +   A+   
Sbjct: 319 DVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVL 378

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             +   G  PD ++Y+ ++++YGR+     A  ++   R E+ + +   ++ LI  YG+ 
Sbjct: 379 GDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSN 438

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     + ++ +M+  G+KPN+++   LL    R+K+   V T+       G++ N   Y
Sbjct: 439 GFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAY 498

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S + +Y  A   E  +++Y+ M++K ++     +  L++    +    EA    ++M+ 
Sbjct: 499 NSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMED 558

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
             +       +SS++   S +G+V+EAE++FN+M  AG EP++   TS++  Y  +++  
Sbjct: 559 L-SIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWG 617

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
                L  +   GI PD   C  L+    +
Sbjct: 618 KACELLLEMEANGIEPDSIACSALMRAFNK 647



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 152/312 (48%), Gaps = 8/312 (2%)

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEE 295
           Y+ MI  + R   V+ A GL+     +KW   P+A  +  LI  +G AG +   +N+ ++
Sbjct: 146 YNMMIRLHARHNWVDQARGLFFEM--QKWSCKPDAETYDALINAHGRAGQWRWAMNLMDD 203

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M    + P+  TYNNL++  G +    +   + K+MTDNG+ P+  T+  +L AY   R 
Sbjct: 204 MLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQ 263

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTF 414
               LS +  MK   ++   T +N ++   + +G + +A ++F  M+     C+PD  TF
Sbjct: 264 YSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTF 323

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +S++ + S +G++    A+F  M+  G +PN+    +L+  Y     +   +  L  + +
Sbjct: 324 TSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ 383

Query: 475 LGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKK 532
            GI PD     CLLN   ++ +    K V  + +   +   VV    L++     G F  
Sbjct: 384 NGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNG-FLA 442

Query: 533 EATELFNSISKD 544
           EA E+F  + +D
Sbjct: 443 EAVEIFRQMEQD 454



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 133/320 (41%), Gaps = 38/320 (11%)

Query: 184 AERLFDDMLD-----------------------------------RGVKPDNVTFSTLIS 208
           A  L DDML                                     GV PD VT + ++S
Sbjct: 197 AMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLS 256

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
             +     +KA+ +FE M      PD  T++ +I    + G    A  L++  R ++   
Sbjct: 257 AYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAEC 316

Query: 269 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
            P+   F++++ LY   G  + C  V+E M A G+KPN+++YN L+             +
Sbjct: 317 RPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALS 376

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +  ++  NG+ P+  +Y  LL +YGR+R       V+  M+++  + +V  YN L+    
Sbjct: 377 VLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYG 436

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G+  EA EIF  M+  +  +P+  +  +++  CS   K    + + +     G   N 
Sbjct: 437 SNGFLAEAVEIFRQME-QDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNT 495

Query: 447 FVLTSLIQCYGKAQRTDDVV 466
               S I  Y  A   +  +
Sbjct: 496 AAYNSAIGSYINAAELEKAI 515



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 129/317 (40%), Gaps = 38/317 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA-RMNNLPNKAVEWFERM 226
           YN  +  +    +L+KA  L+  M  + VK D+VTF+ LIS + RM+  P +A+ + + M
Sbjct: 498 YNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYP-EAISYLKEM 556

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
                      YSS++ AY + G V  A  +++                           
Sbjct: 557 EDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFN--------------------------- 589

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                   +MK  G +P++I Y ++L     +++  +   +  EM  NG+ P+    ++L
Sbjct: 590 --------QMKMAGCEPDVIAYTSMLHAYNASEKWGKACELLLEMEANGIEPDSIACSAL 641

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +RA+ +     +   +   M+EK +  +  ++  + + C  +     A ++ + M     
Sbjct: 642 MRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLP 701

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
                 T + M+ +    GKV     +F +++ +G   NL     L++           +
Sbjct: 702 SLSIGLT-NQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYI 760

Query: 467 RALNRLPELGITPDDRF 483
             L  +   GI P ++ 
Sbjct: 761 EVLEWMSGAGIQPSNQM 777



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 102/242 (42%), Gaps = 2/242 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWF 223
           V+ YN  +  +     L +A  +F  M   G+KP+ V+  TL++ C+R     N      
Sbjct: 425 VVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTV-L 483

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
               S G + +   Y+S I +Y  A  +E A  LY   R +K + D   F+ LI      
Sbjct: 484 SAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRM 543

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
             +   ++  +EM+ + +      Y+++L    +  +  + ++I+ +M   G  P+   Y
Sbjct: 544 SKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAY 603

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S+L AY  +        +  EM+  G++      + L+      G     F + + M+ 
Sbjct: 604 TSMLHAYNASEKWGKACELLLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMRE 663

Query: 404 SE 405
            E
Sbjct: 664 KE 665


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 160/334 (47%), Gaps = 10/334 (2%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLP 216
           L  S  V+ YN  +  + +   ++ A RL + M      PD  TF+ LI   C R   +P
Sbjct: 213 LGPSATVVTYNTMVNGYCRAGRIEDARRLINGM---PFPPDTFTFNPLIRALCVR-GRIP 268

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           + A+  F+ M   GC P  +TYS ++DA  +      A  L D  R +    D   ++ L
Sbjct: 269 D-ALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVL 327

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           I      G+ D  LN+   + + G KP+ +TY  +L ++  ++R  +V+ +  EMT N  
Sbjct: 328 INAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNC 387

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
           +P+  T+ +++ +  +    +  + V   M E G    +  Y+++L    DVG  D+A E
Sbjct: 388 APDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVE 447

Query: 397 IFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           +   +KS   C+PD+  +++++  +CS   +   AE +  EML +   P+     +++  
Sbjct: 448 LLSRLKSY-GCKPDTIAYTTVLKGLCSTE-QWERAEELMAEMLCSDCPPDEVTFNTVVAS 505

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
             +    D  +R + ++ E G +PD     C+++
Sbjct: 506 LCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIID 539



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 164/367 (44%), Gaps = 42/367 (11%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD--------- 199
           A+AL           +++ YNV +       D+D+A  +  ++   G KPD         
Sbjct: 305 AMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLK 364

Query: 200 --------------------------NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDP 233
                                      VTF+T+++      L ++A+E  + M   GC  
Sbjct: 365 SLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVA 424

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           D +TYSS++D     G V+ A  L  R ++   + D  A++T++K   +   ++    + 
Sbjct: 425 DIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELM 484

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
            EM      P+ +T+N ++ ++ +     +   + ++M++NG SP+  TY  ++      
Sbjct: 485 AEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNE 544

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
              +D + +  +++  G +  +  +NTLL     V   ++A ++  +M  S NC PD  T
Sbjct: 545 SCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRS-NCPPDELT 603

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPN----LFVLTSLIQCYGKAQRTDDVVRAL 469
           F+++IT    +G +++A      M E G  PN      V+ +L++  GKAQ   +++  +
Sbjct: 604 FNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLK-AGKAQAALELLSGM 662

Query: 470 -NRLPEL 475
            N  P+L
Sbjct: 663 TNGTPDL 669



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 179/405 (44%), Gaps = 29/405 (7%)

Query: 180 DLDKAERLFDDMLDRG------VKPDNVTFSTLISCARMNNLPNKAVEWFERM-PSFGCD 232
           ++D+A  LFD M   G      V P N+    L S  R+++         ER+  + G  
Sbjct: 165 EIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSD--------AERVFAALGPS 216

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
              +TY++M++ Y RAG +E A  L +      +  D   F+ LI+     G     L V
Sbjct: 217 ATVVTYNTMVNGYCRAGRIEDARRLIN---GMPFPPDTFTFNPLIRALCVRGRIPDALAV 273

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           +++M   G  P+++TY+ LLD   +     Q   +  EM   G  P+  TY  L+ A   
Sbjct: 274 FDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCN 333

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDS 411
               ++ L++   +   G +     Y  +L ++C    +  E  E+  +M +S NC PD 
Sbjct: 334 EGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERW-KEVEELLAEM-TSNNCAPDE 391

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            TF++++T    +G V  A  + + M E G   ++   +S++       R DD V  L+R
Sbjct: 392 VTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSR 451

Query: 472 LPELGITPDDRFCGCLLNVMTQTPK----EELGKLVECVEKSNSKLGY--VVKLLLEEQD 525
           L   G  PD      +L  +  T +    EEL   + C +    ++ +  VV  L ++  
Sbjct: 452 LKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGL 511

Query: 526 IEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLL 570
           ++   +       N  S D+     NC+ID   N + +++A +LL
Sbjct: 512 VDRAIRVVEQMSENGCSPDIVTY--NCIIDGLCNESCIDDAMELL 554



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 159/365 (43%), Gaps = 14/365 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I Y   +K        ++AE L  +ML     PD VTF+T+++      L ++A+   
Sbjct: 460 DTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVV 519

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E+M   GC PD +TY+ +ID       ++ A  L    ++   + D   F+TL+K     
Sbjct: 520 EQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGV 579

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
             ++    +   M      P+ +T+N ++ ++ +     Q     K M +NG  PN +TY
Sbjct: 580 DRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTY 639

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + ++ A  +A   +  L +   M      L    YNT+++     G  +EA ++   M S
Sbjct: 640 SIVVDALLKAGKAQAALELLSGMTNGTPDL--ITYNTVISNLTKAGKMEEALDLLRVMVS 697

Query: 404 SENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           +  C PD+ T+ S+   +C   G    A  M   + + G  P+      ++  + + +RT
Sbjct: 698 NGLC-PDTTTYRSLAYGVCREDG-TDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRT 755

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK---SNSKLGYVVKL 519
           D  +     +   G  PD+     LL  +        G L++  ++   S   LG + K 
Sbjct: 756 DLAIDCFAHMVSSGCMPDESTYVILLEALA------YGGLLDEAKRLLASLCSLGVLDKK 809

Query: 520 LLEEQ 524
           L+EE+
Sbjct: 810 LIEEE 814


>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
 gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 159/311 (51%), Gaps = 5/311 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLI--SCARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           +D+ ER+F++M ++G+K D   ++ +I  +C   N    +A   F+ +   G   +  TY
Sbjct: 17  IDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNT--KRAFALFDELTEKGLVANVHTY 74

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
            ++ID   +AG +E A  L +  +     ++   ++TLI  Y   G  D    V   M+ 
Sbjct: 75  GALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLIDEAFKVQVIMEK 134

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
            G + ++ T N + D + +  +P + K     M + G+ PN  +Y +L+  Y +     +
Sbjct: 135 KGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGNFVE 194

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
              +++EMK+ G + +   YN L+   +  G   EA+E+ ++M+ ++   PD +T++S++
Sbjct: 195 AKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMR-AKGIFPDIYTYTSLL 253

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 GK+ +A  +FNE+ + G   N+   T++I    K  R+++  +  + + E G+T
Sbjct: 254 HGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEAGLT 313

Query: 479 PDDRFCGCLLN 489
           PDDR    L++
Sbjct: 314 PDDRVYTSLVS 324



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 122/256 (47%), Gaps = 40/256 (15%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++YN  +  + K   +D+A ++   M  +G + D  T +T+    R  N P +A  W   
Sbjct: 107 LIYNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLT 166

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P+ ++Y+++ID Y +                                    GN
Sbjct: 167 MIEKGVVPNVVSYTTLIDIYCK-----------------------------------EGN 191

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F     +++EMK  G +PN +TYN L+D   +  R  +   +  EM   G+ P+  TY S
Sbjct: 192 FVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTS 251

Query: 346 LLRAYGRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           LL  +G   +G  +D + ++ E+++KG+ L+V  Y  +++  +  G ++EAF+++++M  
Sbjct: 252 LL--HGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTE 309

Query: 404 SENCQPDSWTFSSMIT 419
           +    PD   ++S+++
Sbjct: 310 A-GLTPDDRVYTSLVS 324



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 98/181 (54%), Gaps = 4/181 (2%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMPSFGCD 232
            RK    ++A+R    M+++GV P+ V+++TLI   C   N +  K +  F+ M   G +
Sbjct: 151 LRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGNFVEAKKL--FQEMKKAGGE 208

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           P+A+TY+ +ID + + G ++ A+ L D  R +    D   +++L+      G  D  + +
Sbjct: 209 PNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVEL 268

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           + E++  G+  N++TY  ++  + +  R  +   +Y EMT+ GL+P+   Y SL+ +  +
Sbjct: 269 FNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPDDRVYTSLVSSLHK 328

Query: 353 A 353
           A
Sbjct: 329 A 329



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 40/245 (16%)

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAKRPWQVKTIYK 329
           ++ LI  +G++G  D    ++EEM   G+K ++  Y  +++    +G  KR +    ++ 
Sbjct: 4   YTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAF---ALFD 60

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           E+T+ GL  N +TY +L+    +A   E    +  EM+ +G+ ++  +YNTL+      G
Sbjct: 61  ELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRG 120

Query: 390 YTDEAF--EIFEDMKSSEN--------------------------------CQPDSWTFS 415
             DEAF  ++  + K  EN                                  P+  +++
Sbjct: 121 LIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYT 180

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           ++I I    G   EA+ +F EM +AG EPN      LI  + K  R  +     + +   
Sbjct: 181 TLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAK 240

Query: 476 GITPD 480
           GI PD
Sbjct: 241 GIFPD 245



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 2/125 (1%)

Query: 155 FTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARM 212
           F    KA  E   + YNV +    K   + +A  L D+M  +G+ PD  T+++L+    +
Sbjct: 199 FQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGECI 258

Query: 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
               + AVE F  +   G   + +TY+++I    + G  E AF LYD         D   
Sbjct: 259 FGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPDDRV 318

Query: 273 FSTLI 277
           +++L+
Sbjct: 319 YTSLV 323


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 154/335 (45%), Gaps = 24/335 (7%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  M  + K   + KA  L+ +ML  G+ P+ VTF  LI      +    A ++   M 
Sbjct: 266 YNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMA 325

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG--- 284
           SFG  P+   Y+ +ID Y +AGN+  A  L+     EK  I P+ F+  I + G  G   
Sbjct: 326 SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEI--EKHEILPDVFTYSILIKGLCGVDR 383

Query: 285 --NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
               DG L   +EMK  G  PN +TYN L+D   +     +   +  +MT+ G+ PN  T
Sbjct: 384 MEEADGLL---QEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIIT 440

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           +++L+  Y +A   E  + +Y EM  KG+   V  Y  L+      G T EAF + ++M+
Sbjct: 441 FSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQ 500

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMF-------------NEMLEAGFEPNLFVL 449
            +    P+ +T S +I      G++S+A  +F             NE+  +   PN  + 
Sbjct: 501 EA-GLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMY 559

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
           T+LIQ      R     +  + +   G+ PD   C
Sbjct: 560 TALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTC 594



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 153/329 (46%), Gaps = 1/329 (0%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           AS  V+ Y   +    +  D  KA RLFD+M+++ + P  V ++ LI      +  ++A 
Sbjct: 189 ASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAE 248

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
             F  M + G  P+  TY++M+D Y +  +V+ A  LY     +    +   F  LI   
Sbjct: 249 SMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGL 308

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
                         +M + GV PN+  YN L+D   +A    +  +++ E+  + + P+ 
Sbjct: 309 CKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDV 368

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY+ L++        E+   + +EMK+KG   +   YNTL+      G  ++A E+   
Sbjct: 369 FTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQ 428

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M + +  +P+  TFS++I      GK+  A  ++ EM+  G  P++   T+LI  + K  
Sbjct: 429 M-TEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDG 487

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLN 489
            T +  R    + E G+ P+     CL++
Sbjct: 488 NTKEAFRLHKEMQEAGLHPNVFTLSCLID 516



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 140/301 (46%), Gaps = 3/301 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
            D   +++ DM+ RG  P+ VT+ TLI  C R  +   KA   F+ M      P  + Y+
Sbjct: 174 FDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFL-KAFRLFDEMIEKKIFPTVVIYT 232

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +I        +  A  ++   RN     +   ++T++  Y    +    L +Y+EM   
Sbjct: 233 ILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGD 292

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G+ PN++T+  L+D + +       +    +M   G+ PN   Y  L+  Y +A    + 
Sbjct: 293 GLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEA 352

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           LS++ E+++  +   V  Y+ L+     V   +EA  + ++MK  +   P++ T++++I 
Sbjct: 353 LSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMK-KKGFLPNAVTYNTLID 411

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                G + +A  + ++M E G EPN+   ++LI  Y KA + +  +     +   G+ P
Sbjct: 412 GYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLP 471

Query: 480 D 480
           D
Sbjct: 472 D 472



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 145/331 (43%), Gaps = 27/331 (8%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL+L     K +   +V  Y++ +K       +++A+ L  +M  +G  P+ VT++TLI 
Sbjct: 352 ALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLID 411

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    KA+E   +M   G +P+ +T+S++ID Y +AG +E A GLY     +    
Sbjct: 412 GYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLP 471

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D  A++ LI  +   GN      +++EM+  G+ PN+ T + L+D + +  R      ++
Sbjct: 472 DVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTL-SVYREMKEKGMQLSVTLYNTLL-AMCA 386
                                   A+ G DT  S   E+       +  +Y  L+  +C 
Sbjct: 532 -----------------------LAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCT 568

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           D G   +A + F DM+ S   +PD +T   +I        + +   +  ++L+ G  PN 
Sbjct: 569 D-GRIFKASKFFSDMRCS-GLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNS 626

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
            V   L + Y ++      +R    L  +GI
Sbjct: 627 SVYRVLAKGYEESGYLKSALRCSEDLSGIGI 657



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 123/282 (43%), Gaps = 17/282 (6%)

Query: 206 LISC---ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           LI C   +R + +         R+ S    P+   +  +I A+   G VE A  +Y    
Sbjct: 96  LIQCLQNSRRSRICCSVFNVLSRLESSKFTPN--VFGVLIIAFSEMGLVEEALWVY---- 149

Query: 263 NEKWRIDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
             K  + P   +  + L G    G FD    VY +M A G  PN++TY  L+D   R   
Sbjct: 150 -YKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGD 208

Query: 321 PWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGEDTLSVYREMKEKGMQLSVTLYN 379
             +   ++ EM +  + P    Y  L+R   G +R  E   S++R M+  GM  ++  YN
Sbjct: 209 FLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAE-SMFRTMRNSGMLPNLYTYN 267

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEML 438
           T++     + +  +A E++++M   +   P+  TF  +I  +C     VS A     +M 
Sbjct: 268 TMMDGYCKIAHVKKALELYQEM-LGDGLLPNVVTFGILIDGLCKTDEMVS-ARKFLIDMA 325

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             G  PN+FV   LI  Y KA    + +   + + +  I PD
Sbjct: 326 SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPD 367


>gi|30688764|ref|NP_850356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75158748|sp|Q8RWS8.1|PP199_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g41720; AltName: Full=Protein EMBRYO DEFECTIVE 2654
 gi|20268762|gb|AAM14084.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|21436141|gb|AAM51317.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330254931|gb|AEC10025.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 152/312 (48%), Gaps = 8/312 (2%)

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEE 295
           Y+ MI  + R   V+ A GL+     +KW   P+A  +  LI  +G AG +   +N+ ++
Sbjct: 146 YNMMIRLHARHNWVDQARGLFFEM--QKWSCKPDAETYDALINAHGRAGQWRWAMNLMDD 203

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M    + P+  TYNNL++  G +    +   + K+MTDNG+ P+  T+  +L AY   R 
Sbjct: 204 MLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQ 263

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTF 414
               LS +  MK   ++   T +N ++   + +G + +A ++F  M+     C+PD  TF
Sbjct: 264 YSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTF 323

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +S++ + S +G++    A+F  M+  G +PN+    +L+  Y     +   +  L  + +
Sbjct: 324 TSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ 383

Query: 475 LGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKK 532
            GI PD     CLLN   ++ +    K V  + +   +   VV    L++     G F  
Sbjct: 384 NGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNG-FLA 442

Query: 533 EATELFNSISKD 544
           EA E+F  + +D
Sbjct: 443 EAVEIFRQMEQD 454



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 163/330 (49%), Gaps = 1/330 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   M ++    +++    +F+ M+  G+KP+ V+++ L+    ++ +   A+   
Sbjct: 319 DVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVL 378

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             +   G  PD ++Y+ ++++YGR+     A  ++   R E+ + +   ++ LI  YG+ 
Sbjct: 379 GDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSN 438

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     + ++ +M+  G+KPN+++   LL    R+K+   V T+       G++ N   Y
Sbjct: 439 GFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAY 498

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S + +Y  A   E  +++Y+ M++K ++     +  L++    +    EA    ++M+ 
Sbjct: 499 NSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMED 558

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
             +       +SS++   S +G+V+EAE++FN+M  AG EP++   TS++  Y  +++  
Sbjct: 559 L-SIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWG 617

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
                   +   GI PD   C  L+    +
Sbjct: 618 KACELFLEMEANGIEPDSIACSALMRAFNK 647



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 133/320 (41%), Gaps = 38/320 (11%)

Query: 184 AERLFDDMLD-----------------------------------RGVKPDNVTFSTLIS 208
           A  L DDML                                     GV PD VT + ++S
Sbjct: 197 AMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLS 256

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
             +     +KA+ +FE M      PD  T++ +I    + G    A  L++  R ++   
Sbjct: 257 AYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAEC 316

Query: 269 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
            P+   F++++ LY   G  + C  V+E M A G+KPN+++YN L+             +
Sbjct: 317 RPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALS 376

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +  ++  NG+ P+  +Y  LL +YGR+R       V+  M+++  + +V  YN L+    
Sbjct: 377 VLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYG 436

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G+  EA EIF  M+  +  +P+  +  +++  CS   K    + + +     G   N 
Sbjct: 437 SNGFLAEAVEIFRQME-QDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNT 495

Query: 447 FVLTSLIQCYGKAQRTDDVV 466
               S I  Y  A   +  +
Sbjct: 496 AAYNSAIGSYINAAELEKAI 515



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 130/317 (41%), Gaps = 38/317 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA-RMNNLPNKAVEWFERM 226
           YN  +  +    +L+KA  L+  M  + VK D+VTF+ LIS + RM+  P +A+ + + M
Sbjct: 498 YNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYP-EAISYLKEM 556

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
                      YSS++ AY + G V  A                                
Sbjct: 557 EDLSIPLTKEVYSSVLCAYSKQGQVTEA-------------------------------- 584

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
               +++ +MK  G +P++I Y ++L     +++  +   ++ EM  NG+ P+    ++L
Sbjct: 585 ---ESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSAL 641

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +RA+ +     +   +   M+EK +  +  ++  + + C  +     A ++ + M     
Sbjct: 642 MRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLP 701

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
                 T + M+ +    GKV     +F +++ +G   NL     L++           +
Sbjct: 702 SLSIGLT-NQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYI 760

Query: 467 RALNRLPELGITPDDRF 483
             L  +   GI P ++ 
Sbjct: 761 EVLEWMSGAGIQPSNQM 777



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 2/242 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWF 223
           V+ YN  +  +     L +A  +F  M   G+KP+ V+  TL++ C+R     N      
Sbjct: 425 VVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTV-L 483

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
               S G + +   Y+S I +Y  A  +E A  LY   R +K + D   F+ LI      
Sbjct: 484 SAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRM 543

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
             +   ++  +EM+ + +      Y+++L    +  +  + ++I+ +M   G  P+   Y
Sbjct: 544 SKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAY 603

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S+L AY  +        ++ EM+  G++      + L+      G     F + + M+ 
Sbjct: 604 TSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMRE 663

Query: 404 SE 405
            E
Sbjct: 664 KE 665


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 153/316 (48%), Gaps = 1/316 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I Y+ T   F    D+D A  LF+ +L +   P  + F+ ++     +   +  +   +
Sbjct: 52  LIPYSSTSTTFHSNNDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLSK 111

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M   G  P+ +  + +I+ + + G +  AF ++ +     +  +   F+TLIK     G
Sbjct: 112 KMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKG 171

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                LN ++++ A+G + N I+Y  L+D + +         + + +    + PN   Y+
Sbjct: 172 QIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYS 231

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +++    + ++  D   +Y EM  KG+  +V  Y+ L++    VG   +A ++F  M  S
Sbjct: 232 TIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKM-IS 290

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           EN +PD +TF+ ++ +    GK+S A  + +EM + G  PN+   +S++    K  R D 
Sbjct: 291 ENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDK 350

Query: 465 VVRALNRLPELGITPD 480
            V  L +L + GI P+
Sbjct: 351 AVALLTKLKDQGIRPN 366



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 119/241 (49%), Gaps = 1/241 (0%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V+P+ V +ST+I     +   N A + +  M S G  P+ +TYS++I  +   G ++ A 
Sbjct: 223 VQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAV 282

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L+++  +E  + D   F+ L+ ++  +G     L + +EM   G  PN++TY+++LD +
Sbjct: 283 DLFNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDAL 342

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +  R  +   +  ++ D G+ PN +TY  L+     +   ED  +++ ++  KG  ++V
Sbjct: 343 CKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITV 402

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y  +       G  DEA  +   M+ +  C PD+ T+  +      +G+   AE +  
Sbjct: 403 VTYIVMFYGFCKKGLFDEASALLSKMEEN-GCIPDAKTYELIKLSLFKKGENDMAEKLHR 461

Query: 436 E 436
           E
Sbjct: 462 E 462



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/316 (20%), Positives = 150/316 (47%), Gaps = 5/316 (1%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ +  F +   +  A  +F  +L  G  P+ +TF+TLI    +    ++A+ + +++ +
Sbjct: 126 NILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVA 185

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G   + ++Y ++ID   + G    A  L  R   +  + +   +ST+I       + + 
Sbjct: 186 LGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVND 245

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
             ++Y EM + G+ PN++TY+ L+       +      ++ +M    + P+  T+  L+ 
Sbjct: 246 AFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVD 305

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            + ++      L +  EM ++G   ++  Y+++L         D+A  +   +K  +  +
Sbjct: 306 VFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKD-QGIR 364

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT--DDVV 466
           P+  T++ +I      GK+ +A  +F ++L  G++  + V+T ++  YG  ++   D+  
Sbjct: 365 PNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYD--ITVVTYIVMFYGFCKKGLFDEAS 422

Query: 467 RALNRLPELGITPDDR 482
             L+++ E G  PD +
Sbjct: 423 ALLSKMEENGCIPDAK 438



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 143/316 (45%), Gaps = 7/316 (2%)

Query: 134 DCVIILNNMTNPDTAALALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDM 191
           +C I++N          A + F   LK   +   I +   +K       + +A    D +
Sbjct: 124 NCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKL 183

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
           +  G + + +++ TLI           A++   R+      P+ + YS++ID   +  +V
Sbjct: 184 VALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHV 243

Query: 252 EMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
             AF LY    ++   I PN   +S LI  + T G     ++++ +M +  +KP++ T+N
Sbjct: 244 NDAFDLYSEMVSKG--ISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFN 301

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            L+D   ++ +      +  EM D G  PN  TY+S+L A  +    +  +++  ++K++
Sbjct: 302 ILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQ 361

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G++ ++  Y  L+      G  ++A  IFED+   +       T+  M      +G   E
Sbjct: 362 GIRPNMHTYTILIDGLCTSGKLEDARNIFEDL-LVKGYDITVVTYIVMFYGFCKKGLFDE 420

Query: 430 AEAMFNEMLEAGFEPN 445
           A A+ ++M E G  P+
Sbjct: 421 ASALLSKMEENGCIPD 436



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 123/275 (44%), Gaps = 3/275 (1%)

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F  +P      + + YSS    +    +V+ A  L++    +        F+ ++     
Sbjct: 40  FNFIPCSSSKINLIPYSSTSTTFHSNNDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVK 99

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           + ++   L + ++M+  G+KPN++  N L++   +        +++ ++   G +PN  T
Sbjct: 100 SKHYHTVLYLSKKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTIT 159

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           + +L++           L+ + ++   G Q +   Y TL+     VG T  A ++   + 
Sbjct: 160 FTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRV- 218

Query: 403 SSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             +  QP+   +S++I    C+ K V++A  +++EM+  G  PN+   ++LI  +    +
Sbjct: 219 DGKLVQPNVVMYSTIID-GMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGK 277

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
             D V   N++    I PD      L++V  ++ K
Sbjct: 278 LKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGK 312


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 186/429 (43%), Gaps = 56/429 (13%)

Query: 111 SCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNV 170
           SC+    ++  ++R LG              M N    AL++ Y     K       YN 
Sbjct: 148 SCAMAPAELSEIVRILGKA-----------KMVN---RALSVFYQVKGRKCRPTASTYNS 193

Query: 171 TMKVFRKCRDLDKAERLFDDML-DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
            + +  +    +K   L+++M  +    PD VT+S LIS     N  + A+  F+ M   
Sbjct: 194 IILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLNRDDSAIRLFDEMKEN 253

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF--- 286
           G  P A  Y++++  Y + G VE A GL    R  +  +    ++ LI+  G +G     
Sbjct: 254 GLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELIRGLGKSGRVEDA 313

Query: 287 ---------DGC-----------------------LNVYEEMKAIGVKPNMITYNNLLDT 314
                    DGC                       + +++EMK +   PN++TYN ++ +
Sbjct: 314 YMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKS 373

Query: 315 MGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
           +  AK P  +  + ++ M  +G+ P+  TY+ L+  Y +    E  L +  EM EKG   
Sbjct: 374 LFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPP 433

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS-WTFSSMITICSCRGKVSEAEA 432
               Y +L+         D A E+F+++K  ENC   S   ++ MI      G+++EA  
Sbjct: 434 CPAAYCSLINTLGVAKRYDVANELFQELK--ENCGCSSARVYAVMIKHFGKCGRLNEAIN 491

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           +FNEM + G  P+++   +L+    +A+R D+       + E G TPD      +LN + 
Sbjct: 492 LFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLA 551

Query: 493 QT--PKEEL 499
           +T  PK  L
Sbjct: 552 RTGGPKGAL 560



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 148/312 (47%), Gaps = 4/312 (1%)

Query: 151 ALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A   + N LK     +V+L N  + +  +   L  A +LFD+M      P+ VT++T+I 
Sbjct: 313 AYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIK 372

Query: 209 CARMNNLP-NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                  P ++A  WFERM   G  P + TYS +ID Y +   VE A  L +    + + 
Sbjct: 373 SLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFP 432

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
             P A+ +LI   G A  +D    +++E+K      +   Y  ++   G+  R  +   +
Sbjct: 433 PCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAINL 492

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           + EM   G +P+   Y +L+    RA   ++  S++R M+E G    +  +N +L   A 
Sbjct: 493 FNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLAR 552

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G    A E+F  MK+S   +PD  +F++++   S  G   EA  +  EM   GF+ +L 
Sbjct: 553 TGGPKGALEMFTKMKNS-TIKPDVVSFNTILGCLSRAGLFEEAAKLMQEMSSKGFQYDLI 611

Query: 448 VLTSLIQCYGKA 459
             +S+++  GK 
Sbjct: 612 TYSSILEAVGKV 623



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 148/319 (46%), Gaps = 6/319 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  Y   ++   K   ++ A   + +ML  G KPD V  + LI+    +N    A++ F+
Sbjct: 294 VFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFD 353

Query: 225 RMPSFGCDPDALTYSSMIDAYGRA-GNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYG 281
            M    C P+ +TY+++I +   A   +  A   ++R + +   I P++F  S LI  Y 
Sbjct: 354 EMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDG--IVPSSFTYSILIDGYC 411

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                +  L + EEM   G  P    Y +L++T+G AKR      +++E+ +N    +  
Sbjct: 412 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSAR 471

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            YA +++ +G+     + ++++ EMK+ G    V  YN L+         DEAF +F  M
Sbjct: 472 VYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTM 531

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           + +  C PD  + + ++   +  G    A  MF +M  +  +P++    +++ C  +A  
Sbjct: 532 EEN-GCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGL 590

Query: 462 TDDVVRALNRLPELGITPD 480
            ++  + +  +   G   D
Sbjct: 591 FEEAAKLMQEMSSKGFQYD 609



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 3/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   ++   + R   +  +   DM+           S ++       + N+A+  F ++ 
Sbjct: 121 YMALIRCLDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIVRILGKAKMVNRALSVFYQVK 180

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNF 286
              C P A TY+S+I    + G+ E    LY+   +E     D   +S LI  +      
Sbjct: 181 GRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLNRD 240

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  + +++EMK  G++P    Y  L+    +  +  +   + KEM          TY  L
Sbjct: 241 DSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTEL 300

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +R  G++   ED    Y+ M + G +  V L N L+ +     +  +A ++F++MK   N
Sbjct: 301 IRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLL-N 359

Query: 407 CQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           C P+  T++++I ++   +  +SEA + F  M + G  P+ F  + LI  Y K  R +  
Sbjct: 360 CAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKA 419

Query: 466 VRALNRLPELGITP 479
           +  L  + E G  P
Sbjct: 420 LLLLEEMDEKGFPP 433



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
           A  +F  M +  +KPD V+F+T++ C     L  +A +  + M S G   D +TYSS+++
Sbjct: 559 ALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAKLMQEMSSKGFQYDLITYSSILE 618

Query: 244 AYGRAGNVEMA 254
           A G+  + +M 
Sbjct: 619 AVGKVDDCKMV 629


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 158/352 (44%), Gaps = 36/352 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y   +  F K  DLDKA   + +MLDRG+ P+ VT+S++I+        +KA+E  
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  P+  TY+S++  Y  +G  + A G   +  ++    D   +++L+      
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       +++ M   G+KP + TY  LL          ++  +   M  NG+ PN   +
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+ AY +    +  + V+ +M+++G+      Y T++ +    G  ++A   FE M  
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM-I 436

Query: 404 SENCQPDSWTFSSMI----------------------TIC------------SCR-GKVS 428
            E   P +  ++S+I                       IC             C+ G+V 
Sbjct: 437 DERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVI 496

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           E+E +F+ M+  G +P++   ++LI  Y  A + D+  + L  +  +G+ PD
Sbjct: 497 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 140/283 (49%), Gaps = 1/283 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + Y   + +  K   ++ A R F+ M+D  + P N+ +++LI    + +  +KA E  
Sbjct: 408 DTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELI 467

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G   D + ++S+ID++ + G V  +  L+D       + D   +STLI  Y  A
Sbjct: 468 LEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 527

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D    +   M ++G+KP+ +TYN L++   +  R      +++EM  +G+SP+  TY
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             +L+   + R       +Y  + E G QL ++ YN +L        TDEA  +F+++  
Sbjct: 588 NIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 647

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           ++  Q ++ TF+ MI      G+  EA+ +F  +   G  P++
Sbjct: 648 TD-LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 147/322 (45%), Gaps = 38/322 (11%)

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG--CDPDAL 236
           R  D  + +   M   G  P+  +++ L+      N   +A+E  + MP  G  C PD +
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVV 200

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           +Y+++I+ + + G+++ A+G                                    Y EM
Sbjct: 201 SYTTVINGFFKEGDLDKAYG-----------------------------------TYHEM 225

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
              G+ PN++TY++++  + +A+   +   +   M  NG+ PN  TY S++  Y  +   
Sbjct: 226 LDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP 285

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           ++ +   ++M   G++  V  YN+L+      G   EA ++F+ M +    +P+  T+ +
Sbjct: 286 KEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM-TKRGLKPEITTYGT 344

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           ++   + +G + E   + + M+  G  PN +V + LI  Y K  + D  +   +++ + G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 477 ITPDDRFCGCLLNVMTQTPKEE 498
           + PD    G ++ ++ ++ + E
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVE 426



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 191/462 (41%), Gaps = 62/462 (13%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           E+  Y   ++ +     L +   L D M+  G+ P++  FS LI         ++A+  F
Sbjct: 338 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVF 397

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE------------------- 264
            +M   G +PD +TY ++I    ++G VE A   +++  +E                   
Sbjct: 398 SKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIF 457

Query: 265 -KWR---------------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
            KW                +D   F+++I  +   G       +++ M  IGVKP++ITY
Sbjct: 458 DKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITY 517

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           + L+D    A +  +   +   M   G+ P+  TY +L+  Y +    ED L ++REM+ 
Sbjct: 518 STLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMES 577

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G+   +  YN +L        T  A E++  +  S   Q +  T+ ++I    C+  ++
Sbjct: 578 SGVSPDIITYNIILQGLFQTRRTAAAKELYVGITES-GTQLELSTY-NIILHGLCKNNLT 635

Query: 429 -EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
            EA  MF  +     +        +I    K  R D+       L   G+ PD R    +
Sbjct: 636 DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695

Query: 488 L-NVMTQTPKEELGKLVECVEK----SNSK-LGYVVKLLLEEQDI-----------EGDF 530
             N++ Q   EEL  L   +E+    +NS+ L  +V+ LL+  DI           E  F
Sbjct: 696 AENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHF 755

Query: 531 KKEATE---LFNSISKDVKKAYCNC----LIDLCVNLNLLEN 565
             EA+      + +S    + Y +C    +  LCVN  + EN
Sbjct: 756 SLEASTASLFLDLLSGGKYQEYHSCIRGGIFSLCVNSEVQEN 797



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 7/217 (3%)

Query: 293 YEEMKAIG---VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           Y  M   G   V PN+ TY  L+ +   A R          +   G   +   +  LL+ 
Sbjct: 76  YNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 135

Query: 350 YGRARYGEDTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENC 407
               +   D +  V R M + G   +V  YN LL    D   + EA E+ + M     +C
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDC 195

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD  +++++I      G + +A   ++EML+ G  PN+   +S+I    KAQ  D  + 
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 468 ALNRLPELGITPDDRFCGCLLN--VMTQTPKEELGKL 502
            L  + + G+ P+ R    +++    +  PKE +G L
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 151/320 (47%), Gaps = 17/320 (5%)

Query: 177  KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
            K R  D A +L D M  R V+    TF+ L+       L  +AV  F RM  +GC PD +
Sbjct: 1190 KVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKI 1249

Query: 237  TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYE 294
             +S +I +  +      A   +D  ++   R +P+   +++L+  +  AGN      V+ 
Sbjct: 1250 AFSVVISSLSKKRRAIEAQSFFDSLKD---RFEPDVVVYTSLVHGWCRAGNISEAERVFG 1306

Query: 295  EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
            EMK  G+ PN+ TY+ ++D + R+ +  +   ++ EM D G  PN  T+ +L+R + +A 
Sbjct: 1307 EMKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAG 1366

Query: 355  YGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
              E  L VY +MK  G       YN L+ + C D    +EA +I   +K  + C  ++ +
Sbjct: 1367 RTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRD-DNLEEAVKILNSVK--KGCNLNASS 1423

Query: 414  FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
            F+ +    S  G V+ A  MF +M +    PN      L++ +   + TD V++    + 
Sbjct: 1424 FNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMD 1483

Query: 474  ELGITPD--------DRFCG 485
            E  I P+          FCG
Sbjct: 1484 ENEIEPNANTYRVLISTFCG 1503



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/307 (19%), Positives = 147/307 (47%), Gaps = 2/307 (0%)

Query: 137  IILNNMTNPDTAALALTYFTN-KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
            +++++++    A  A ++F + K +   +V++Y   +  + +  ++ +AER+F +M   G
Sbjct: 1253 VVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAG 1312

Query: 196  VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
            + P+  T+S +I     +    +A + F  M   GCDP+A+T+++++  + +AG  E   
Sbjct: 1313 IXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVL 1372

Query: 256  GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
             +Y++ +      D   ++ LI+ +    N +  + +   +K  G   N  ++N +   +
Sbjct: 1373 QVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKK-GCNLNASSFNPIFGCI 1431

Query: 316  GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
             +         ++ +M D    PN  TY  L+R +   +  +  L + +EM E  ++ + 
Sbjct: 1432 SKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNA 1491

Query: 376  TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
              Y  L++    +G+ + A+  F++M   +  +P    +  ++      G++ + E +  
Sbjct: 1492 NTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVE 1551

Query: 436  EMLEAGF 442
            +M+  GF
Sbjct: 1552 KMVNRGF 1558



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 111/246 (45%), Gaps = 21/246 (8%)

Query: 308  YNNLLDTMGRAKR---PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
            Y  ++D  G+ ++    WQ+  + K  T N   P   T+  L+R Y +A    + +  + 
Sbjct: 1181 YMEMIDLAGKVRQFDLAWQLIDLMK--TRNVEIPV-ETFTILVRRYVKAGLAAEAVHAFN 1237

Query: 365  EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
             M++ G +     ++ +++  +      EA   F+ +K  +  +PD   ++S++      
Sbjct: 1238 RMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLK--DRFEPDVVVYTSLVHGWCRA 1295

Query: 425  GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPELGITPDD 481
            G +SEAE +F EM  AG  PN++  + +I      G+  R  DV    + + ++G  P+ 
Sbjct: 1296 GNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDV---FSEMIDVGCDPNA 1352

Query: 482  RFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG----YVVKLLLEEQDIEGDFKKEATEL 537
                 L+ V  +  + E  K+++ V     +LG     +    L E     D  +EA ++
Sbjct: 1353 ITFNNLMRVHVKAGRTE--KVLQ-VYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKI 1409

Query: 538  FNSISK 543
             NS+ K
Sbjct: 1410 LNSVKK 1415


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 156/327 (47%), Gaps = 5/327 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDML-DRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFER 225
           YN  +    K + + +A  +F  M+ +R   PD V++S LI    +++ L  +A + +++
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDEL-GRAEKLYKQ 507

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M    C P+  TY++ ++   R G +  A G+Y+         D   +STLI  +  A  
Sbjct: 508 MIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARK 567

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D    ++E M + G +PN +TYN LL  + +  +P +   ++++M + G  P+  TY +
Sbjct: 568 HDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTT 627

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           LL  +      E  + V+ EM  KG    V  YN LL      G   EA ++F+ M S +
Sbjct: 628 LLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQ 687

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEM-LEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            C+PD+ + + MI   S   ++ +A  +F  M  + G  P+L    SLI      QR  +
Sbjct: 688 -CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSE 746

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVM 491
            ++    +  L ++PD      LL  +
Sbjct: 747 AMKVFKEIDRLKLSPDPHAFNVLLEAI 773



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 125/248 (50%), Gaps = 3/248 (1%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
            LN +      A A   +   + A  S +VI Y+  +  F   R  D+A  LF+ M+ RG
Sbjct: 523 FLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRG 582

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
            +P+ VT++ L+      + P++A E F +M   GCDPD +TY++++  +   G +E A 
Sbjct: 583 CRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAV 642

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            ++D   ++    D  A++ L+K +  AG       +++ M +   KP+ +++N ++D +
Sbjct: 643 EVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGL 702

Query: 316 GRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
            +AKR      +++ M  D+G SP+  TY SL+      +   + + V++E+    +   
Sbjct: 703 SKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPD 762

Query: 375 VTLYNTLL 382
              +N LL
Sbjct: 763 PHAFNVLL 770



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 138/275 (50%), Gaps = 7/275 (2%)

Query: 165 VILYNVTMK-VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           V  YN  +  + RK R  D A+ ++++M+  G  PD +T+STLI    +    ++A E F
Sbjct: 517 VTTYNAFLNGLMRKGRIAD-AQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELF 575

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M S GC P+A+TY+ ++    +    + A  L+ +        D   ++TL+  +   
Sbjct: 576 ETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNV 635

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +  + V++EM + G  P+++ YN LL    RA +P + K +++ M      P+  ++
Sbjct: 636 GKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSH 695

Query: 344 ASLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDM 401
             ++    +A+  +D + V+  M ++ G    +  YN+L+  +C +   + EA ++F+++
Sbjct: 696 NIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLS-EAMKVFKEI 754

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
              +   PD   F+ ++    C G V + E  F +
Sbjct: 755 DRLK-LSPDPHAFNVLLEAIKC-GIVYQFEIRFKD 787



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/353 (20%), Positives = 144/353 (40%), Gaps = 41/353 (11%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDP-DALTYSS 240
           +A +LF  M+  G KPD   +S ++ +  ++ NL ++A + F  M      P + + +++
Sbjct: 252 EASKLFRAMVKSGCKPDATIYSYMVLAHCKLENL-DEAFKLFLEMAVESKAPLNNVAWTA 310

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
            +    ++G +E AF    R   E        +  LI+L   +G  D       E+    
Sbjct: 311 FLSGLCKSGKIEQAFEAC-RTMQESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRN 369

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           ++P+  T ++++  + +A R     ++ + M   G  P+  T++ L+    +A   ++  
Sbjct: 370 IQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQ 429

Query: 361 SVYREMKEK--GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE------------- 405
              + M  K      S   YN+LL          +AF IF  M S               
Sbjct: 430 EFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILI 489

Query: 406 ----------------------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
                                 NC P+  T+++ +     +G++++A+ ++ EM+ AG  
Sbjct: 490 DGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCS 549

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           P++   ++LI  +  A++ D        +   G  P+     CLL+ + +  K
Sbjct: 550 PDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESK 602



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 145/335 (43%), Gaps = 24/335 (7%)

Query: 151 ALTYFT--NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI- 207
           ALT+F          +V  YN  +    + RDL +A ++F+ M+ +GV P+  T++ L+ 
Sbjct: 113 ALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQ 172

Query: 208 -SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM---IDAYGRAGNVEMAFGLYDRARN 263
            SC   N+  ++AV +F  M   G  P +  Y  +   + A G+ G     FG   R   
Sbjct: 173 SSCYERNS--DEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFG---RDLE 227

Query: 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
           ++  ++      L+  +           ++  M   G KP+   Y+ ++    + +   +
Sbjct: 228 KRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDE 287

Query: 324 VKTIYKEMTDNGLSP----NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
              ++ EM     +P     W  + S L   G+    E      R M+E  +  S  +Y+
Sbjct: 288 AFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKI---EQAFEACRTMQE-SLSSSQPVYD 343

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
            L+ +  + G  D+A E   ++ +  N QP S T  S+I      G+V  A ++   M++
Sbjct: 344 MLIRLLIESGRIDKAEEACLEI-AGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIK 402

Query: 440 AGFEPNLFVLTSLIQCYGKA---QRTDDVVRALNR 471
            G+ P++   + LI    KA   Q   + ++ ++R
Sbjct: 403 RGYCPDMATHSMLINELCKADKIQEAQEFLQGMDR 437



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/328 (20%), Positives = 133/328 (40%), Gaps = 11/328 (3%)

Query: 174 VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDP 233
           V +  RD  +A   F  +  R  K D  T++ L+     +    +A + FE+M + G  P
Sbjct: 103 VIKHLRDGGEALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVP 162

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL---IKLYGTAGNFDGCL 290
           +  TY+ ++ +     N + A   +    ++ ++     +  +   +K  G  G F    
Sbjct: 163 NGFTYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVF 222

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
               E +   V   M+    LL       +  +   +++ M  +G  P+   Y+ ++ A+
Sbjct: 223 GRDLEKR---VAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAH 279

Query: 351 GRARYGEDTLSVYREMK-EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-ENCQ 408
            +    ++   ++ EM  E    L+   +   L+     G  ++AFE    M+ S  + Q
Sbjct: 280 CKLENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQ 339

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           P    +  +I +    G++ +AE    E+     +P+     S+IQ   KA R D  +  
Sbjct: 340 P---VYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSL 396

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPK 496
           L  + + G  PD      L+N + +  K
Sbjct: 397 LETMIKRGYCPDMATHSMLINELCKADK 424


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 194/417 (46%), Gaps = 17/417 (4%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +    K  ++ KA  LF++ML  G++PD  T++ LI     ++   KA E   
Sbjct: 381 VVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLA 440

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA-RNEKWRIDPNAF--STLIKLYG 281
            M +    P   TYS +I     + +++ A  + D+  RN    + PN F   TLIK Y 
Sbjct: 441 EMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRN---GVKPNVFMYGTLIKAYV 497

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
               ++  + + + M A GV P++  YN L+  + RAK+  + K +  +M + G+ PN +
Sbjct: 498 QESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAH 557

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY + +  Y ++   +     +++M   G+  +  +Y  L+    DVG T EA   F+ M
Sbjct: 558 TYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCM 617

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
              +   PD   +S++I   S  GK  EA  +F + L+ G  P++F+  SLI  + K   
Sbjct: 618 -LEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD 676

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLL 521
            +   +  + +   GI P+      L+N + +    E+ K  E  ++   K   V  ++ 
Sbjct: 677 IEKASQLYDEMLHNGINPNIVVYNTLINGLCKLG--EVTKARELFDEIEEK-DLVPDVVT 733

Query: 522 EEQDIEGDFKK----EATELFNS-ISKDVK-KAYCNC-LIDLCVNLNLLENACKLLE 571
               I+G  K     EA +LF+  ISK +    Y  C LID C     LE A  L  
Sbjct: 734 YSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFH 790



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/460 (22%), Positives = 204/460 (44%), Gaps = 55/460 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +    +   +D+A  +   M+++G+ PD  T++ L+          +A   FE MP
Sbjct: 279 YNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMP 338

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S G +P+  TY+++ID + + GN+E A  + D       +++   ++ +I     AG   
Sbjct: 339 SSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMA 398

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDT------MGRA-------------KRPW------ 322
             ++++ EM   G++P+  TYN L+D       M +A               P+      
Sbjct: 399 KAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLI 458

Query: 323 ----------QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                     +   +  +M  NG+ PN   Y +L++AY +    E  + + + M   G+ 
Sbjct: 459 SGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVL 518

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
             +  YN L+         +EA  +  DM   +  +P++ T+ + I + S  G++  AE 
Sbjct: 519 PDLFCYNCLIIGLCRAKKVEEAKMLLVDM-GEKGIKPNAHTYGAFINLYSKSGEIQVAER 577

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            F +ML +G  PN  + T LI+ +     T + +     + E G+ PD R    +++ ++
Sbjct: 578 YFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLS 637

Query: 493 QT--PKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-----EGDFKKEATELFNSISKDV 545
           +    KE +G  ++ +     K G V  + L    I     EGD +K A++L++ +  + 
Sbjct: 638 KNGKTKEAMGVFLKFL-----KTGVVPDVFLYNSLISGFCKEGDIEK-ASQLYDEMLHNG 691

Query: 546 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR 585
                    ++ V   L+   CKL E+    E++ +I+ +
Sbjct: 692 INP------NIVVYNTLINGLCKLGEVTKARELFDEIEEK 725



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 164/356 (46%), Gaps = 11/356 (3%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++Y + +K      +  +A   F  ML++G+ PD   +S +I     N    +A+  F +
Sbjct: 592 VIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLK 651

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTA 283
               G  PD   Y+S+I  + + G++E A  LYD   +    I+PN   ++TLI      
Sbjct: 652 FLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNG--INPNIVVYNTLINGLCKL 709

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       +++E++   + P+++TY+ ++D   ++    +   ++ EM   G+SP+   Y
Sbjct: 710 GEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIY 769

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             L+   G+    E  LS++ E ++K +  S++ +N+L+      G   EA E+F+DM  
Sbjct: 770 CILIDGCGKEGNLEKALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVIEARELFDDM-V 827

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +   P+  T++ +I        + EAE +F +M      PN    TSL+  Y +     
Sbjct: 828 DKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRF 887

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKL 519
            ++     +   GI  D    G    VM     +E GK +E ++  N  L   +KL
Sbjct: 888 KMISLFKDMEARGIACDAIAYG----VMASAYCKE-GKSLEALKLLNKSLVEGIKL 938



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 162/375 (43%), Gaps = 43/375 (11%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           ++++ +  FR    L++A  +F   +  G  P  +  + L+      N+     + +  M
Sbjct: 174 VFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSM 233

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAG 284
                 PD  TY+++I A+ + G+V     +      E     PN F+    I      G
Sbjct: 234 VEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE---CKPNLFTYNAFIGGLCQTG 290

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  L V + M   G+ P+  TY  L+D   + KR  + K I++ M  +GL+PN  TY 
Sbjct: 291 AVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYT 350

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+  + +    E+ L +  EM  +G++L+V  YN ++   A  G   +A  +F +M  +
Sbjct: 351 ALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMA 410

Query: 405 ENCQPDSW-----------------------------------TFSSMITICSCRGKVSE 429
              +PD+W                                   T+S +I+       + +
Sbjct: 411 -GLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQK 469

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC-GCLL 488
           A  + ++M+  G +PN+F+  +LI+ Y +  R +  +  L  +   G+ P D FC  CL+
Sbjct: 470 ANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLP-DLFCYNCLI 528

Query: 489 NVMTQTPKEELGKLV 503
             + +  K E  K++
Sbjct: 529 IGLCRAKKVEEAKML 543



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 143/339 (42%), Gaps = 36/339 (10%)

Query: 165  VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
            +++YN  +    K  ++ KA  LFD++ ++ + PD VT+ST+I     +    +A + F+
Sbjct: 696  IVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFD 755

Query: 225  RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW------------------ 266
             M S G  PD   Y  +ID  G+ GN+E A  L+  A+ +                    
Sbjct: 756  EMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGK 815

Query: 267  --------------RIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
                          ++ PN   ++ LI  YG A   +    ++ +M+   + PN +TY +
Sbjct: 816  VIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTS 875

Query: 311  LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            LL +  +    +++ +++K+M   G++ +   Y  +  AY +     + L +  +   +G
Sbjct: 876  LLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEG 935

Query: 371  MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
            ++L   +++ L+             E+  +M   E     S T ++++      G   EA
Sbjct: 936  IKLEDDVFDALIFHLCKEKQISTVLELLSEM-GKEELSLSSKTCNTLLLGFYKSGNEDEA 994

Query: 431  EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
              +   M   G+ P    LT  I   G+     D+ + L
Sbjct: 995  SKVLGVMQRLGWVPTSLSLTDSIST-GRDDMKSDISQVL 1032


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 143/301 (47%), Gaps = 4/301 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
            D A    D M  R V     TF  L+       L  +A+  F RM  + C PD + +S 
Sbjct: 110 FDVAWYFIDLMKARNVDVTVETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSI 169

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I    R      A   +D  + +K+  D   ++ L++ +  AGN      V+ EMK  G
Sbjct: 170 LISILCRERRASQAQEFFDSLK-DKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAG 228

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           +KPN+ TY+ ++D++ R  +  +   I+ EM D G  PN  TY SL+R + +A   E  L
Sbjct: 229 IKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVL 288

Query: 361 SVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
            VY +MK  G +     YN L+   C D    D A ++   M + + C P++ TF+++  
Sbjct: 289 QVYNQMKRLGCEPDTVTYNFLIETHCKDENLED-AIKVIGLM-AKKGCAPNASTFNTLFG 346

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             +  G V+ A  M+ +M E   E N     +L++ +  ++ TD V++    + E  I P
Sbjct: 347 CIAKLGDVNAAHRMYKKMKELNCEANTVTYNTLMKMFVASKSTDMVLKLKTEMDENKIEP 406

Query: 480 D 480
           +
Sbjct: 407 N 407



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 143/306 (46%), Gaps = 5/306 (1%)

Query: 154 YFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA 210
           YF + +KA      V  + + M+ + +     +A   F+ M D   KPD + FS LIS  
Sbjct: 115 YFIDLMKARNVDVTVETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISIL 174

Query: 211 RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP 270
                 ++A E+F+ +     +PD + Y++++  + RAGN+  A  ++   +    + + 
Sbjct: 175 CRERRASQAQEFFDSLKD-KFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNV 233

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
             +S +I      G      +++ EM   G +PN ITYN+L+    +A R  +V  +Y +
Sbjct: 234 YTYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQ 293

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           M   G  P+  TY  L+  + +    ED + V   M +KG   + + +NTL    A +G 
Sbjct: 294 MKRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGD 353

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
            + A  +++ MK   NC+ ++ T+++++ +            +  EM E   EPN+    
Sbjct: 354 VNAAHRMYKKMKEL-NCEANTVTYNTLMKMFVASKSTDMVLKLKTEMDENKIEPNVNTYK 412

Query: 451 SLIQCY 456
            LI  Y
Sbjct: 413 VLITMY 418



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 151/308 (49%), Gaps = 3/308 (0%)

Query: 137 IILNNMTNPDTAALALTYFTN-KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           I+++ +     A+ A  +F + K K   +VI+Y   ++ + +  ++ +AER+F +M   G
Sbjct: 169 ILISILCRERRASQAQEFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAG 228

Query: 196 VKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           +KP+  T+S +I S  R   +  +A + F  M   GC P+++TY+S++  + +AG  E  
Sbjct: 229 IKPNVYTYSIVIDSLCRCGQI-TRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKV 287

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             +Y++ +      D   ++ LI+ +    N +  + V   M   G  PN  T+N L   
Sbjct: 288 LQVYNQMKRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGC 347

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           + +         +YK+M +     N  TY +L++ +  ++  +  L +  EM E  ++ +
Sbjct: 348 IAKLGDVNAAHRMYKKMKELNCEANTVTYNTLMKMFVASKSTDMVLKLKTEMDENKIEPN 407

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           V  Y  L+ M   +G+ + A++ F +M   +  +P    +  ++      G++ + E + 
Sbjct: 408 VNTYKVLITMYCGMGHWNNAYKFFREMIDEKCLRPSLPVYDMVLQQLRKAGQLKKHEELV 467

Query: 435 NEMLEAGF 442
            +M++ GF
Sbjct: 468 EKMVDRGF 475



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 135/302 (44%), Gaps = 12/302 (3%)

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAV----EWFERMPSFGCDPDALTYSSMIDAYGRAG 249
           R + P  V      S A  + +P   V     W      F   P+A  Y+ M+D  G+  
Sbjct: 51  RSISPSIVRHVIAQSSAVRHGIPVPQVLAFFNWASNQDGFRKSPEA--YNEMVDFSGQVM 108

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
             ++A+   D  +     +    F  L++ Y  AG     ++ +  M+    KP+ I ++
Sbjct: 109 MFDVAWYFIDLMKARNVDVTVETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFS 168

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            L+  + R +R  Q +  +  + D    P+   Y +L+R + RA    +   V+ EMK  
Sbjct: 169 ILISILCRERRASQAQEFFDSLKDK-FEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVA 227

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G++ +V  Y+ ++      G    A +IF +M  +  CQP+S T++S++ I    G+  +
Sbjct: 228 GIKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDA-GCQPNSITYNSLMRIHVKAGRTEK 286

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----DRFCG 485
              ++N+M   G EP+      LI+ + K +  +D ++ +  + + G  P+    +   G
Sbjct: 287 VLQVYNQMKRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFG 346

Query: 486 CL 487
           C+
Sbjct: 347 CI 348


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 196/410 (47%), Gaps = 4/410 (0%)

Query: 135 CVIILNNMTNPDTAAL--ALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDML 192
           C  +L ++   D  AL   +  F      S +V  Y+  ++ + K R+ D A+++  +M 
Sbjct: 212 CNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMR 271

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +RG   + VT++ LI+    +    +A  + + M  +G  PD  TY ++I+   ++    
Sbjct: 272 ERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSN 331

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  L D     + + +   ++ LI  +   GN D    + +EM A GV+PN ITY+NL+
Sbjct: 332 EAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLV 391

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
             + +  +  +   + K+M  +   P+  TY  ++  + R    +D   +  EM+  G+ 
Sbjct: 392 RGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGIS 451

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  Y+ ++      G  ++A ++ E+M +++  +P+++ ++ +I+     G VS A  
Sbjct: 452 PNVYTYSIMIHGLCQSGEPEKASDLLEEM-TTKGLKPNAFVYAPLISGYCREGNVSLACE 510

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVM 491
           +F++M +    P+L+   SLI    K  R ++  +   ++ E G+ P++  + G +   +
Sbjct: 511 IFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYL 570

Query: 492 TQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 541
                E   +LV+ +  +  K   V+ + L E   + D  ++ +  F S+
Sbjct: 571 KNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM 620



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 162/345 (46%), Gaps = 2/345 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +    K R  ++A+ L D+M    +KP+ V ++ LI         ++A +  + M 
Sbjct: 317 YGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMV 376

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  P+ +TY +++    + G ++ A  L  +   +  R D   ++ +I+ +    +  
Sbjct: 377 AAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKK 436

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +  EM+  G+ PN+ TY+ ++  + ++  P +   + +EMT  GL PN   YA L+
Sbjct: 437 DAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLI 496

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             Y R         ++ +M +  +   +  YN+L+   + VG  +E+ + F  M+     
Sbjct: 497 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQE-RGL 555

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+ +T+S +I      G +  AE +   ML+ G +PN  +   L++ Y K+   + V  
Sbjct: 556 LPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSS 615

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECVEKSNS 511
               + + G+  D+R  G L++ ++ +   E   +++  +EK+ S
Sbjct: 616 TFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGS 660



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/323 (20%), Positives = 147/323 (45%), Gaps = 2/323 (0%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K+    ++  YN  +    K   ++++ + F  M +RG+ P+  T+S LI     N    
Sbjct: 517 KVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLE 576

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
            A +  +RM   G  P+ + Y  ++++Y ++ ++E     +    ++   +D   +  LI
Sbjct: 577 SAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILI 636

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
               ++GN +    V   ++  G  P++  Y++L+  + +     +   I  EM+  G+ 
Sbjct: 637 HNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVD 696

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           PN   Y +L+    ++       +V+  +  KG+  +   Y +L+     VG    AF +
Sbjct: 697 PNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYL 756

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           + +M ++    PD++ +S + T CS  G + +A  +  EM   G   ++    +L+  + 
Sbjct: 757 YNEMLAT-GITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFC 814

Query: 458 KAQRTDDVVRALNRLPELGITPD 480
           K  +  + ++ L+ +   G+ P+
Sbjct: 815 KRGKMQETLKLLHVIMGRGLVPN 837



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 3/222 (1%)

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
           RA ++     P     L+  Y  +G       V   M+  G+ P++   N LL  + RA 
Sbjct: 164 RALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRAD 223

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
               +  + + M   G+SP+  TY++L+ AY + R  +    V  EM+E+G  L+   YN
Sbjct: 224 AMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYN 283

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEML 438
            L+A     G  +EAF   +DM+      PD +T+ ++I  +C  R + +EA+A+ +EM 
Sbjct: 284 VLIAGLCRSGAVEEAFGFKKDMEDY-GLVPDGFTYGALINGLCKSR-RSNEAKALLDEMS 341

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            A  +PN+ V  +LI  + +    D+  + +  +   G+ P+
Sbjct: 342 CAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPN 383



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 126/305 (41%), Gaps = 38/305 (12%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           CR+  +  A  +FD M    V PD   +++LI          ++ ++F +M   G  P+ 
Sbjct: 500 CREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNE 559

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
            TYS +I  Y + G++E A  L  R                                   
Sbjct: 560 FTYSGLIHGYLKNGDLESAEQLVQR----------------------------------- 584

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M   G+KPN + Y +LL++  ++    +V + +K M D G+  +   Y  L+     +  
Sbjct: 585 MLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGN 644

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            E    V   +++ G    V +Y++L++        ++AF I ++M S +   P+   ++
Sbjct: 645 MEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM-SKKGVDPNIVCYN 703

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           ++I      G +S A  +FN +L  G  PN    TSLI    K     +     N +   
Sbjct: 704 ALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT 763

Query: 476 GITPD 480
           GITPD
Sbjct: 764 GITPD 768



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 148/326 (45%), Gaps = 30/326 (9%)

Query: 165  VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI--SCARMNNLPNKAVEW 222
            ++ YN  +    K  D+  A  +F+ +L +G+ P+ VT+++LI  SC ++ ++ N A   
Sbjct: 699  IVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSC-KVGDISN-AFYL 756

Query: 223  FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            +  M + G  PDA  YS +      AG++E A  L +     +     ++F+ L+  +  
Sbjct: 757  YNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMF-LRGHASISSFNNLVDGFCK 815

Query: 283  AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
             G     L +   +   G+ PN +T  N++  +  A +  +V TI+ E+          T
Sbjct: 816  RGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVEL-------QQKT 868

Query: 343  YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
              S  R +          S++ +M  +G ++ + + + ++      G  D+A  +  D+ 
Sbjct: 869  SESAARHFS---------SLFMDMINQG-KIPLDVVDDMIRDHCKEGNLDKAL-MLRDVI 917

Query: 403  SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN----LFVLTSLIQCYGK 458
             +++      ++ +++     +GK+SEA  +  EM + G  P+    L +LT+L    G 
Sbjct: 918  VAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPSENQCLILLTNL-HTSGY 976

Query: 459  AQRTDDVVRALNRLPELGITPDDRFC 484
             Q  + V+   N L    +  D +FC
Sbjct: 977  IQEHNTVLD--NMLCHKWLQKDSKFC 1000


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 162/363 (44%), Gaps = 1/363 (0%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
           I+  + N    + A+ YF   ++ + + +L+N+ +    K   L +A ++ ++M +RG+ 
Sbjct: 146 IVQALCNTGNLSRAMQYFRESVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIV 205

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           PD VT+++LI     +    +A +  E M      P+ +TY+++I  Y + G   +A  L
Sbjct: 206 PDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQL 265

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
            +R        D   F++LI  +      D    V   MK     PN++TYN L+  +  
Sbjct: 266 IERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCD 325

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
           A R  +   +  EM   G+ P+  TY SL+  + R    E    +   M E+G+      
Sbjct: 326 AGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGIS 385

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           Y TL          DEAF + ++M  +    P+ +TF+S++    C  ++ EA  +   M
Sbjct: 386 YCTLAVALLKSERFDEAFALLDNMFDA-GAIPNLFTFNSLMEGLCCSRRLDEARHLLAVM 444

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 497
              G +P       L+    KA R DD    L  +   GI P     G +++ + +  K+
Sbjct: 445 RRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQ 504

Query: 498 ELG 500
           +L 
Sbjct: 505 DLA 507



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 149/348 (42%), Gaps = 36/348 (10%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS----------------- 208
           I YN  +  F K  D+++A +L  +M +RG  PD VT S+++                  
Sbjct: 106 ITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRE 165

Query: 209 ---CA--------------RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
              CA              + N L ++A +  E M   G  PD +TY+S+ID   ++  +
Sbjct: 166 SVECAPDSVLFNILVHGLCKANQL-SEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRM 224

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           E A  L +     K R +   ++TLI  Y   G       + E M   G  P+++T+N+L
Sbjct: 225 EEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSL 284

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +    +  +  +   +   M     +PN  TY  L+     A    +   +  EM  +G+
Sbjct: 285 ISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGI 344

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
              +  YN+L+ +       ++AF+I +++       PD  ++ ++        +  EA 
Sbjct: 345 LPDIITYNSLIGIFCRNFQIEQAFQI-QNLMVERGVIPDGISYCTLAVALLKSERFDEAF 403

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           A+ + M +AG  PNLF   SL++    ++R D+    L  +  +G  P
Sbjct: 404 ALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDP 451



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 121/250 (48%), Gaps = 3/250 (1%)

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           CD + +TY+++I  + +AG++E AF L    +      D    S++++     GN    +
Sbjct: 101 CDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAM 160

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
             + E  ++   P+ + +N L+  + +A +  + + + +EM++ G+ P+  TY SL+   
Sbjct: 161 QYFRE--SVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGL 218

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
            ++   E+   +   M ++ ++ ++  YNTL+      G T  A ++ E M  S    PD
Sbjct: 219 CKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQS-GTHPD 277

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
             TF+S+I+    + K+ +A  + + M +    PNL     LI     A R ++    L+
Sbjct: 278 VVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLS 337

Query: 471 RLPELGITPD 480
            +   GI PD
Sbjct: 338 EMDGRGILPD 347



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 2/248 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +N  +  F +   +DKA  +   M      P+ VT++ LIS        N+A E  
Sbjct: 277 DVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELL 336

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  PD +TY+S+I  + R   +E AF + +         D  ++ TL      +
Sbjct: 337 SEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKS 396

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
             FD    + + M   G  PN+ T+N+L++ +  ++R  + + +   M   G  P  +TY
Sbjct: 397 ERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTY 456

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             L+    +A   +D   V   M  +G+Q  V+   T++   A  G  D A   F+ + +
Sbjct: 457 EVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVVA 516

Query: 404 SEN--CQP 409
           +E+  C P
Sbjct: 517 AESKACDP 524



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 4/178 (2%)

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYK-EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           N  T N LL T+ +A+R  Q   I++ E+       N  TY +L+  + +A   E    +
Sbjct: 68  NNFTCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQL 127

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
             EMKE+G    V  +++++    + G    A + F   + S  C PDS  F+ ++    
Sbjct: 128 LAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYF---RESVECAPDSVLFNILVHGLC 184

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              ++SEA  M  EM E G  P++    SLI    K+ R ++  + L  + +  + P+
Sbjct: 185 KANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPN 242


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 154/335 (45%), Gaps = 24/335 (7%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  M  + K   + KA  L+ +ML  G+ P+ VTF  LI      +    A ++   M 
Sbjct: 266 YNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMA 325

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG--- 284
           SFG  P+   Y+ +ID Y +AGN+  A  L+     EK  I P+ F+  I + G  G   
Sbjct: 326 SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEI--EKHEILPDVFTYSILIKGLCGVDR 383

Query: 285 --NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
               DG L   +EMK  G  PN +TYN L+D   +     +   +  +MT+ G+ PN  T
Sbjct: 384 MEEADGLL---QEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIIT 440

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           +++L+  Y +A   E  + +Y EM  KG+   V  Y  L+      G T EAF + ++M+
Sbjct: 441 FSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQ 500

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMF-------------NEMLEAGFEPNLFVL 449
            +    P+ +T S +I      G++S+A  +F             NE+  +   PN  + 
Sbjct: 501 EA-GLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMY 559

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
           T+LIQ      R     +  + +   G+ PD   C
Sbjct: 560 TALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTC 594



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 153/329 (46%), Gaps = 1/329 (0%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           AS  V+ Y   +    +  D  KA RLFD+M+++ + P  V ++ LI      +  ++A 
Sbjct: 189 ASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAE 248

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
             F  M + G  P+  TY++M+D Y +  +V+ A  LY     +    +   F  LI   
Sbjct: 249 SMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGL 308

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
                         +M + GV PN+  YN L+D   +A    +  +++ E+  + + P+ 
Sbjct: 309 CKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDV 368

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY+ L++        E+   + +EMK+KG   +   YNTL+      G  ++A E+   
Sbjct: 369 FTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQ 428

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M + +  +P+  TFS++I      GK+  A  ++ EM+  G  P++   T+LI  + K  
Sbjct: 429 M-TEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDG 487

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLN 489
            T +  R    + E G+ P+     CL++
Sbjct: 488 NTKEAFRLHKEMQEAGLHPNVFTLSCLID 516



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 143/313 (45%), Gaps = 3/313 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMP 227
           N+ +    K    D   +++ DM+ RG  P+ VT+ TLI  C R  +   KA   F+ M 
Sbjct: 162 NMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFL-KAFRLFDEMI 220

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                P  + Y+ +I        +  A  ++   RN     +   ++T++  Y    +  
Sbjct: 221 EKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVK 280

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L +Y EM   G+ PN++T+  L+D + +       +    +M   G+ PN   Y  L+
Sbjct: 281 KALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLI 340

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             Y +A    + LS++ E+++  +   V  Y+ L+     V   +EA  + ++MK  +  
Sbjct: 341 DGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMK-KKGF 399

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P++ T++++I      G + +A  + ++M E G EPN+   ++LI  Y KA + +  + 
Sbjct: 400 LPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMG 459

Query: 468 ALNRLPELGITPD 480
               +   G+ PD
Sbjct: 460 LYTEMVIKGLLPD 472



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 157/391 (40%), Gaps = 70/391 (17%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL+L     K +   +V  Y++ +K       +++A+ L  +M  +G  P+ VT++TLI 
Sbjct: 352 ALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLID 411

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    KA+E   +M   G +P+ +T+S++ID Y +AG +E A GLY     +    
Sbjct: 412 GYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLP 471

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAK------ 319
           D  A++ LI  +   GN      +++EM+  G+ PN+ T + L+D +   GR        
Sbjct: 472 DVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531

Query: 320 ---------------------------------------RPWQVKTIYKEMTDNGLSPNW 340
                                                  R ++    + +M  +GL P+ 
Sbjct: 532 LAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDV 591

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            T   +++ + RA +  D + +  ++ + G+  + ++Y  L     + GY   A      
Sbjct: 592 FTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALSF--- 648

Query: 401 MKSSENCQP---------DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
               E  QP          S+T  S   +C     V+E +   +  L A F  + FVL  
Sbjct: 649 --CGEGVQPLDRVNSEPWGSYTIRSRFQLCV----VTEKKECHSSYLTA-FGIHSFVLLW 701

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
                 K     ++   L ++P +G   D R
Sbjct: 702 YFHTILKPPSPHEI---LKKVPFIGQKGDQR 729



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 144/341 (42%), Gaps = 29/341 (8%)

Query: 147 TAALALTYF---TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF 203
           TA  AL  F   + +   +K   LY+  + V    +   KA  L  D++    K    + 
Sbjct: 49  TANQALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDLIQCLQK----SR 104

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
            + I C+  N L         R+ S    P+   +  +I A+   G VE A  +Y     
Sbjct: 105 RSRICCSVFNVL--------SRLESSKFTPN--VFGVLIIAFSEMGLVEEALWVY----- 149

Query: 264 EKWRIDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
            K  + P   +  + L G    G FD    VY +M A G  PN++TY  L+D   R    
Sbjct: 150 YKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDF 209

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGEDTLSVYREMKEKGMQLSVTLYNT 380
            +   ++ EM +  + P    Y  L+R   G +R  E   S++R M+  GM  ++  YNT
Sbjct: 210 LKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAE-SMFRTMRNSGMLPNLYTYNT 268

Query: 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLE 439
           ++     + +  +A E++ +M   +   P+  TF  +I  +C     VS A     +M  
Sbjct: 269 MMDGYCKIAHVKKALELYXEM-LGDGLLPNVVTFGILIDGLCKTDEMVS-ARKFLIDMAS 326

Query: 440 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            G  PN+FV   LI  Y KA    + +   + + +  I PD
Sbjct: 327 FGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPD 367



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 96/226 (42%), Gaps = 23/226 (10%)

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
           PNKA++ F +M      PD +T +  + A    G ++M   ++   R+     D    ++
Sbjct: 730 PNKALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNS 789

Query: 276 LIKLYGTAGNFDGCLNVYE--EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           LI +Y   G       +++  + K +    +MI  + L    G+A+   Q+ T  KE   
Sbjct: 790 LINMYSKCGEIGTARRLFDGTQKKDVTTWTSMIVGHAL---HGQAEEALQLFTEMKETNK 846

Query: 334 -------NG------LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYN 379
                  NG      + PN  T+  +L A   A   E+    +R MKE   ++  ++ + 
Sbjct: 847 RARKNKRNGEXESSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFG 906

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
            ++ +    G   EA+E    M      +P++  + +++  CS +G
Sbjct: 907 CMVDLLCRAGLLTEAYEFILKMP----VRPNAVVWRTLLGACSLQG 948


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 107/467 (22%), Positives = 209/467 (44%), Gaps = 17/467 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +  F K  ++D+A  LF+ ML+    PD  T++ LI        P    +  +
Sbjct: 271 VVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQ 330

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M  +GC+P+ +TY++++D+  ++G    AF L         +     F+ +I ++   G
Sbjct: 331 EMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVG 390

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D    +++ M   G  P++ TYN ++    RA R    + + + MT+ G  P+  TY 
Sbjct: 391 QLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYN 450

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           S++    +A   ++   VY  ++  G  L V   +TL+         D+A ++  +M+ +
Sbjct: 451 SIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERN 510

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            +  PD   ++ +I       ++ ++ A F+EML+ G  P +   + +I    K+ R  D
Sbjct: 511 GS-APDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRD 569

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEE 523
               L  + E G+TPD      +++ + ++   +E  +L + ++++      V   +L +
Sbjct: 570 GCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVD 629

Query: 524 QDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQ 583
           +  +     EA  L   +  D       CL D     ++ +   K  E      ++  ++
Sbjct: 630 KLCKVSRLDEAIHLLEVMESD------GCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMK 683

Query: 584 SR----SPTQWSLHLKSLSLGAAL-TALHIWINDLSKALESGEEFPP 625
           SR    +P  +SL L  L     +  A+ IW     +ALE+G +  P
Sbjct: 684 SRGCSPTPFMYSLLLTKLVAEEKMDQAMEIW----EEALEAGADVDP 726



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 141/319 (44%), Gaps = 37/319 (11%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + I Y+  +  F K RD  +A RL D+M  RG+ P N  ++T+I     N   + A+ 
Sbjct: 164 SPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALV 223

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            +  M    C P  +TY+ ++DA  ++  +                              
Sbjct: 224 HYRDMQR-NCAPSVITYTILVDALCKSARIS----------------------------- 253

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                D  L + E+M   G  PN++TYN L++   +     +   ++ +M +N  SP+  
Sbjct: 254 -----DASL-ILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVF 307

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY  L+  Y +    +D   + +EM + G + +   YNTL+      G   +AF + + M
Sbjct: 308 TYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQ-M 366

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
               +C+P  +TF+ MI +    G++  A  +F  M + G  P+++    +I    +A R
Sbjct: 367 MLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANR 426

Query: 462 TDDVVRALNRLPELGITPD 480
            DD  + L R+ E G  PD
Sbjct: 427 IDDARQLLERMTEAGCPPD 445



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 146/317 (46%), Gaps = 1/317 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++  YN+ +    +   +D A +L + M + G  PD VT+++++S     +  ++A E +
Sbjct: 410 DIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVY 469

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E + + G   D +T S++ID   ++  ++ A  L           D  A++ LI  +  A
Sbjct: 470 EVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKA 529

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D  L  + EM   G  P +ITY+ ++D + ++ R      + K M + G++P+   Y
Sbjct: 530 DQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVY 589

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S++    ++   ++   +Y+ MK+ G   +V  YN L+     V   DEA  + E M+ 
Sbjct: 590 TSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVME- 648

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S+ C PD+ T++S+        +  +A  +F  M   G  P  F+ + L+      ++ D
Sbjct: 649 SDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMD 708

Query: 464 DVVRALNRLPELGITPD 480
             +       E G   D
Sbjct: 709 QAMEIWEEALEAGADVD 725



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 98/221 (44%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           ++ +V+ Y + +  F K   LDK+   F +MLD+G  P  +T+S +I     +       
Sbjct: 512 SAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGC 571

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
              + M   G  PDA+ Y+S+ID   ++ + + A+ LY   +          ++ L+   
Sbjct: 572 MLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKL 631

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
                 D  +++ E M++ G  P+ +TYN++ D   ++    +   +++ M   G SP  
Sbjct: 632 CKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTP 691

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
             Y+ LL         +  + ++ E  E G  +   +  TL
Sbjct: 692 FMYSLLLTKLVAEEKMDQAMEIWEEALEAGADVDPEISRTL 732


>gi|2335106|gb|AAC02776.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 810

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 152/312 (48%), Gaps = 8/312 (2%)

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEE 295
           Y+ MI  + R   V+ A GL+     +KW   P+A  +  LI  +G AG +   +N+ ++
Sbjct: 146 YNMMIRLHARHNWVDQARGLFFEM--QKWSCKPDAETYDALINAHGRAGQWRWAMNLMDD 203

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M    + P+  TYNNL++  G +    +   + K+MTDNG+ P+  T+  +L AY   R 
Sbjct: 204 MLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQ 263

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTF 414
               LS +  MK   ++   T +N ++   + +G + +A ++F  M+     C+PD  TF
Sbjct: 264 YSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTF 323

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +S++ + S +G++    A+F  M+  G +PN+    +L+  Y     +   +  L  + +
Sbjct: 324 TSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ 383

Query: 475 LGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKK 532
            GI PD     CLLN   ++ +    K V  + +   +   VV    L++     G F  
Sbjct: 384 NGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNG-FLA 442

Query: 533 EATELFNSISKD 544
           EA E+F  + +D
Sbjct: 443 EAVEIFRQMEQD 454



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 157/330 (47%), Gaps = 13/330 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   M ++    +++    +F+ M+  G+KP+ V+++ L+    ++ +   A+   
Sbjct: 319 DVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVL 378

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             +   G  PD ++Y+ ++++YGR+     A  ++   R E+ + +   ++ LI  YG+ 
Sbjct: 379 GDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSN 438

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     + ++ +M+  G+KPN+++   LL    R+K+   V T+       G++ N   Y
Sbjct: 439 GFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAY 498

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S + +Y  A   E  +++Y+ M++K ++     +  L++    +    EA    ++M+ 
Sbjct: 499 NSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEME- 557

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                        +    +  G+V+EAE++FN+M  AG EP++   TS++  Y  +++  
Sbjct: 558 ------------DLSIPLTKEGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWG 605

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
                   +   GI PD   C  L+    +
Sbjct: 606 KACELFLEMEANGIEPDSIACSALMRAFNK 635



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 133/320 (41%), Gaps = 38/320 (11%)

Query: 184 AERLFDDMLD-----------------------------------RGVKPDNVTFSTLIS 208
           A  L DDML                                     GV PD VT + ++S
Sbjct: 197 AMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLS 256

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
             +     +KA+ +FE M      PD  T++ +I    + G    A  L++  R ++   
Sbjct: 257 AYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAEC 316

Query: 269 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
            P+   F++++ LY   G  + C  V+E M A G+KPN+++YN L+             +
Sbjct: 317 RPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALS 376

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +  ++  NG+ P+  +Y  LL +YGR+R       V+  M+++  + +V  YN L+    
Sbjct: 377 VLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYG 436

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G+  EA EIF  M+  +  +P+  +  +++  CS   K    + + +     G   N 
Sbjct: 437 SNGFLAEAVEIFRQME-QDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNT 495

Query: 447 FVLTSLIQCYGKAQRTDDVV 466
               S I  Y  A   +  +
Sbjct: 496 AAYNSAIGSYINAAELEKAI 515



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/343 (20%), Positives = 139/343 (40%), Gaps = 26/343 (7%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWF 223
           V+ YN  +  +     L +A  +F  M   G+KP+ V+  TL++ C+R     N      
Sbjct: 425 VVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTV-L 483

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK----- 278
               S G + +   Y+S I +Y  A  +E A  LY   R +K + D   F+ LI      
Sbjct: 484 SAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRM 543

Query: 279 -LYGTA-----------------GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
             Y  A                 G      +++ +MK  G +P++I Y ++L     +++
Sbjct: 544 SKYPEAISYLKEMEDLSIPLTKEGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEK 603

Query: 321 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 380
             +   ++ EM  NG+ P+    ++L+RA+ +     +   +   M+EK +  +  ++  
Sbjct: 604 WGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFE 663

Query: 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
           + + C  +     A ++ + M           T + M+ +    GKV     +F +++ +
Sbjct: 664 IFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLT-NQMLHLFGKSGKVEAMMKLFYKIIAS 722

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
           G   NL     L++           +  L  +   GI P ++ 
Sbjct: 723 GVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQM 765



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 90/213 (42%), Gaps = 18/213 (8%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
            + +AE +F+ M   G +PD + +++++     +    KA E F  M + G +PD++  S
Sbjct: 568 QVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACS 627

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           +++ A+ + G     F L D  R ++       F  +         F  C  + E  +AI
Sbjct: 628 ALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEI---------FSACNTLQEWKRAI 678

Query: 300 GVKPNMITY---------NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            +   M  Y         N +L   G++ +   +  ++ ++  +G+  N  TYA LL   
Sbjct: 679 DLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHL 738

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
                    + V   M   G+Q S  +Y  +++
Sbjct: 739 LAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIIS 771


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 178/398 (44%), Gaps = 44/398 (11%)

Query: 123 LRCLGDDFLEQDCVIILNNMT--NPDTAALALTYFTNKLK---ASKEVILYNVTMKVFRK 177
           L C+ D F    C I+L  +   N    AL L +     +   ++ +V+ Y   +  F K
Sbjct: 152 LSCMPDVF---SCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFK 208

Query: 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
             D DKA   + +MLDR + PD VT+S++I+        +KA+E    M   G  P+ +T
Sbjct: 209 EGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMT 268

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           Y+S++  Y  +   + A G   + R++    D   +++L+      G       +++ M 
Sbjct: 269 YNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMT 328

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
             G++P++ TY  LL          ++  +   M  NG+ P+ + +  L+ AY +    +
Sbjct: 329 KRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVD 388

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           + + V+ +M++ G+  +V  Y  ++ +    G  D+A   FE M   E   P+   ++S+
Sbjct: 389 EAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQM-IDEGLTPNIIVYTSL 447

Query: 418 I----------------------TIC------------SCR-GKVSEAEAMFNEMLEAGF 442
           I                       IC             C+ G+V E+E +F+ M+  G 
Sbjct: 448 IHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGV 507

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +PN+   ++LI  Y  A + D+  + L+ +  +G+ PD
Sbjct: 508 KPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPD 545



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 127/260 (48%), Gaps = 1/260 (0%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           DKAE L  +MLDRG+  + + F+++I          ++ + F+ M   G  P+ +TYS++
Sbjct: 458 DKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTL 517

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           ID Y  AG ++ A  L     +   + D   ++TLI  Y      D  L +++EM + GV
Sbjct: 518 IDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGV 577

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            PN+ITYN +L  +   +R    K +Y  +T +G     +TY  +L    +    ++ L 
Sbjct: 578 SPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALR 637

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           +++ +    +QL    +N ++     VG  DEA ++F    SS    P+ WT+  M    
Sbjct: 638 MFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAF-SSNGLVPNYWTYRLMAENI 696

Query: 422 SCRGKVSEAEAMFNEMLEAG 441
             +G + E + +F  M + G
Sbjct: 697 IGQGLLEELDQLFFSMEDNG 716



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 159/356 (44%), Gaps = 2/356 (0%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           L D M+  G+ PD+  F+ LI         ++A+  F +M   G +P+ +TY ++I    
Sbjct: 358 LLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILC 417

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           ++G+V+ A   +++  +E    +   +++LI        +D    +  EM   G+  N I
Sbjct: 418 KSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTI 477

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
            +N+++ +  +  R  + + ++  M   G+ PN  TY++L+  Y  A   ++   +   M
Sbjct: 478 FFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSM 537

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
              GM+     YNTL+     V   D+A  +F++M SS    P+  T++ ++       +
Sbjct: 538 FSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSS-GVSPNIITYNIILQGLFHTRR 596

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            + A+ ++  + ++G +  L     ++    K   TD+ +R    L    +  + R    
Sbjct: 597 TAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 656

Query: 487 LLNVMTQTPKEELGKLVECVEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSI 541
           ++  + +  + +  K +     SN  +  Y    L+ E  I     +E  +LF S+
Sbjct: 657 MIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSM 712



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 146/365 (40%), Gaps = 46/365 (12%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFS-TLISCARMNNLPNKAVEWFERMPSFGCD---PDALT 237
           + A  +FD++L RG        +  L   AR +  P  AV  + RM   G     P   T
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARHS--PAAAVSRYNRMARAGAGKVTPTVHT 89

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRID---------------------------- 269
           Y  +I    RAG +++ F        + +R++                            
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 270 ------PNAFSTLIKLYGTAGNFDG-----CLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
                 P+ FS  I L G             L++  + +  G  P++++Y  +++   + 
Sbjct: 150 TELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKE 209

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
               +  + Y EM D  +SP+  TY+S++ A  + +  +  + V   M + G+  +   Y
Sbjct: 210 GDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTY 269

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           N++L          EA    + M+ S+  +PD  T++S++      G+ +EA  +F+ M 
Sbjct: 270 NSILHGYCSSEQPKEAIGFLKKMR-SDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMT 328

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
           + G EP++    +L+Q Y       ++   L+ +   GI PD      L+    +  K +
Sbjct: 329 KRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVD 388

Query: 499 LGKLV 503
              LV
Sbjct: 389 EAMLV 393


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 175/374 (46%), Gaps = 14/374 (3%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR-----GVKPDNVTFSTLISCARMNN 214
           + S  VI YN  +    K   +D+A  LFDDM  R     G +PD +++ST+I       
Sbjct: 175 ECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQ 234

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
             +KA E+F+RM + GC P+ +TYSS+ID   +         L    + + + I+   F+
Sbjct: 235 RVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFN 294

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            ++         +     +E +   G KPN++TYN  +  + +A R  +   I  EM ++
Sbjct: 295 AMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVES 354

Query: 335 GLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
            ++P+  TY+S++  +   GR    +D  +  R M  + +   VT + TLL   ++   +
Sbjct: 355 KVTPDVITYSSIIDGFCKAGRMDKADDVFT--RMMVHECIPHPVT-FMTLLHGFSEHKKS 411

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
            EAF + EDM ++    P   T++ ++        V  A  ++++M     +P+      
Sbjct: 412 REAFRVHEDMVNA-GFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAP 470

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKLVECVEKS 509
           LIQC  +A+R D+    L+ +    + P+   C  L+ V+ +  +  E    L   VE  
Sbjct: 471 LIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVG 530

Query: 510 NSKLGYVVKLLLEE 523
              LG   K+L+EE
Sbjct: 531 CQPLGETFKILVEE 544



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 150/319 (47%), Gaps = 7/319 (2%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y   +  F K   +D+A  L D+M +RGVK D +  STLI         ++A+E F+ 
Sbjct: 112 IMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKS 171

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR-----NEKWRIDPNAFSTLIKLY 280
           M    C P+ +TY+++++   +A  ++ A  L+D        +     D  ++ST+I   
Sbjct: 172 MGE-ECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDAL 230

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
             A   D     ++ M+A+G  PN++TY++L+D + +  RP +   +   M + G   N 
Sbjct: 231 CKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINI 290

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
             + ++L A  +    E     +  + + G + +V  YN  +      G  DEA+ I  +
Sbjct: 291 IDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLE 350

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M  S+   PD  T+SS+I      G++ +A+ +F  M+     P+     +L+  + + +
Sbjct: 351 MVESK-VTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHK 409

Query: 461 RTDDVVRALNRLPELGITP 479
           ++ +  R    +   G  P
Sbjct: 410 KSREAFRVHEDMVNAGFIP 428



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 149/376 (39%), Gaps = 35/376 (9%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           +L+ +   D    A  +F   LK+ K+  V+ YNV +    K   +D+A R+  +M++  
Sbjct: 296 MLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESK 355

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V PD +T+S++I         +KA + F RM    C P  +T+ +++  +        AF
Sbjct: 356 VTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAF 415

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            +++   N  +      ++ L+     A + +  L +Y +MK    +P+  TY  L+  +
Sbjct: 416 RVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCL 475

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ--- 372
            RA+R  + K     M  + + PN     +L+    +    ++  SV   + E G Q   
Sbjct: 476 CRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLG 535

Query: 373 -----------------------------LSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
                                             Y+  +A     G  DEA E+ E M  
Sbjct: 536 ETFKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQM-V 594

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +  +PD  T+ +++       +V  A A F +M   G  P L   T LI     A   D
Sbjct: 595 LKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMAD 654

Query: 464 DVVRALNRLPELGITP 479
           +  R    +   G TP
Sbjct: 655 EAFRIFEAMVAAGFTP 670



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 124/257 (48%), Gaps = 11/257 (4%)

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           C P+ + Y+++I+ + +AG V+ AF L D  +    ++D    STLI+     G  D  L
Sbjct: 107 CFPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEAL 166

Query: 291 NVYEEMKAIG--VKPNMITYNNLLDTMGRAKRPWQVKTIYKEM-----TDNGLSPNWNTY 343
              E+ K++G    PN+ITYN +++ + +A R  +   ++ +M       +G  P+  +Y
Sbjct: 167 ---EQFKSMGEECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISY 223

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           ++++ A  +A+  +     ++ M+  G   +V  Y++L+     V    E  E+   MK 
Sbjct: 224 STVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMK- 282

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +    +   F++M+       +  +A   F  +L++G +PN+      +    KA R D
Sbjct: 283 EKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVD 342

Query: 464 DVVRALNRLPELGITPD 480
           +  R L  + E  +TPD
Sbjct: 343 EAYRILLEMVESKVTPD 359



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 7/186 (3%)

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G + N  T   LL+   +AKR  +   + KE  +    PN   Y +++  + +A   +  
Sbjct: 71  GFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQA 130

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
             +  EMKE+G+++ V L++TL+      G  DEA E F+ M   E C P+  T+++++ 
Sbjct: 131 FELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM--GEECSPNVITYNTVVN 188

Query: 420 ICSCRGKVSEAEAMFNEM---LEA--GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
                 ++ EA  +F++M    EA  G EP++   +++I    KAQR D       R+  
Sbjct: 189 GLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRA 248

Query: 475 LGITPD 480
           +G  P+
Sbjct: 249 VGCAPN 254



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 126/331 (38%), Gaps = 71/331 (21%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K + +VI Y+  +  F K   +DKA+ +F  M+     P  VTF TL+     +    +A
Sbjct: 355 KVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREA 414

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS----- 274
               E M + G  P   TY+ ++D    A +VE A  +Y + + +K + D N ++     
Sbjct: 415 FRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQC 474

Query: 275 ------------------------------TLIKLYGTAGNFDGCLNVYEEMKAIGVKP- 303
                                          L+++    G  D   +V + +  +G +P 
Sbjct: 475 LCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPL 534

Query: 304 -------------------------------NMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
                                          +  TY+  +  + +A +P +   + ++M 
Sbjct: 535 GETFKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMV 594

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             G+ P+  TY ++LR+       E  ++ + +M  +G    +  Y  L+         D
Sbjct: 595 LKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMAD 654

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
           EAF IFE M ++    P + T   M T+ SC
Sbjct: 655 EAFRIFEAMVAA-GFTPQAQT---MRTLSSC 681



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 101/259 (38%), Gaps = 7/259 (2%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           ++++ +   D+   AL  + +K+K  K   +   Y   ++   + R +D+A+   D M  
Sbjct: 435 VLMDCVCGADSVESALEIY-HKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEA 493

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
             V P+      L+         ++A    + +   GC P   T+  +++        E 
Sbjct: 494 DNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEA 553

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  L    R+  +  D   +S  +     AG  D  + V E+M   GV+P+  TY  +L 
Sbjct: 554 ASKLL---RSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLR 610

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
           ++    R       +++M   G +P   TY  L+     A   ++   ++  M   G   
Sbjct: 611 SLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTP 670

Query: 374 SVTLYNTLLAMCADVGYTD 392
                 TL +   D GY D
Sbjct: 671 QAQTMRTLSSCLRDAGYQD 689


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 153/307 (49%), Gaps = 1/307 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ +    K     +A+RLF++M+D+GV+PD VTFS LI       +  +A ++ E M 
Sbjct: 240 YNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMM 299

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD  T++S+I+ +   G+++ A  L+    ++ +  D  +++ LI  Y    N +
Sbjct: 300 LRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVE 359

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + +Y EM  +G  P+M T+  LL  +  A +    K ++  +  + +  N    +  L
Sbjct: 360 EAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFL 419

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +     + + ++ E+K   M+L +  +N L+         + A+E+FE + S E  
Sbjct: 420 DGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKL-SQEGL 478

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           QPD  T+  MI      G+V  A  +F  M E G  PNL   ++L+  + K  + ++VV+
Sbjct: 479 QPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVK 538

Query: 468 ALNRLPE 474
            L+++ +
Sbjct: 539 LLHKMIQ 545



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 140/314 (44%), Gaps = 7/314 (2%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           ++ RG  PD VT+++LI    M +  ++A   F RM   GC P+ +TY ++I    R GN
Sbjct: 152 IMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGN 211

Query: 251 VEMAFGLYDRARN--EKWRID--PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
           + +A  L+    N    + I+  PN FS   +I      G +     ++ EM   GV+P+
Sbjct: 212 INLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPD 271

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           ++T++ L+DT+ +     + K   + M   G+ P+  T+ SL+  +      +    ++ 
Sbjct: 272 VVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFL 331

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
            M  KG +  V  Y  L+         +EA +++ +M       PD  TF  ++      
Sbjct: 332 SMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGK-WPDMKTFCVLLKGLFLA 390

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
           GKV +A+ +F  +       NL++ +  +    K     + +   N L    +  D    
Sbjct: 391 GKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESF 450

Query: 485 GCLLNVMTQTPKEE 498
            CL++ + +  K E
Sbjct: 451 NCLIDGLCKARKLE 464



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 107/218 (49%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI Y V +  + K  ++++A +L+++ML  G  PD  TF  L+    +      A + F
Sbjct: 341 DVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLF 400

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             +       +    S  +D   + G +  A  L++  ++   ++D  +F+ LI     A
Sbjct: 401 GVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKA 460

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              +    ++E++   G++P+++TY  +++   +  +      +++ M +NG +PN  TY
Sbjct: 461 RKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTY 520

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
           ++LL  + +    E+ + +  +M +K + L+ ++Y  +
Sbjct: 521 SALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIV 558



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 98/214 (45%), Gaps = 5/214 (2%)

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           +F+ L+       ++    ++Y++M   G+ PN  T N L++ +    R  +  +    +
Sbjct: 93  SFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAMAGI 152

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G  P+  TY SL++         +   ++  M++ G   +V  Y TL+      G  
Sbjct: 153 MRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNI 212

Query: 392 DEAFEIFEDMKSSE-----NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           + A ++ ++M +       NC+P+ ++++ +I      GK  EA+ +FNEM++ G  P++
Sbjct: 213 NLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDV 272

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              ++LI    K     +  + L  +   GI PD
Sbjct: 273 VTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPD 306


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 166/344 (48%), Gaps = 9/344 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE-WFERM 226
           Y + M    + R  D     F  +L  G++   +  +T + C       ++AV+    RM
Sbjct: 159 YGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLLHRM 218

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAG 284
              GC P+A++Y+++I +       + A  +  R   E  R  P+  +F+T+I  +   G
Sbjct: 219 SDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQG 278

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                 N+  EM   GV+P+++TYN+++D + +A+   + + + ++M D G+ P+  TY 
Sbjct: 279 EVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYT 338

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +++  Y  + + +++  ++R+M  KG+   +  +N+ ++     G + +A EIF+ M ++
Sbjct: 339 AIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYM-TT 397

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +   PD  ++S ++   +  G+ ++   +F+ M + G   N      LI  + K    D+
Sbjct: 398 KGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDE 457

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 508
            +     +   G+ PD      L++   +     +G+L + +EK
Sbjct: 458 AMLVFTEMQGQGVRPDVVTYSTLISAFCR-----MGRLADAMEK 496



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 151/317 (47%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +    K R +DKAE +   M+D+GV+PD +T++ +I     +    ++ + F
Sbjct: 298 DVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMF 357

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M S G  P  +T++S + +  + G  + A  ++     +    D  ++S L+  Y T 
Sbjct: 358 RKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATE 417

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G F    N++  M   G+  N   +N L+    +     +   ++ EM   G+ P+  TY
Sbjct: 418 GRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTY 477

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           ++L+ A+ R     D +  + +M   G++ +  +Y++L+      G   +A E+  +M S
Sbjct: 478 STLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMS 537

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               +P+   FSS+I      G+V +A  +FN ++  G  P +    SLI  Y    + +
Sbjct: 538 KGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKME 597

Query: 464 DVVRALNRLPELGITPD 480
                L+ +  +GI PD
Sbjct: 598 KAFGVLDAMVSVGIEPD 614



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 153/304 (50%), Gaps = 5/304 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGV-KPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++Y+  +  F    DL KA+ L  +M+ +G+ +P+ V FS++I           A + F 
Sbjct: 510 VVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFN 569

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G  P  +T++S+ID Y   G +E AFG+ D   +     D   ++TL+  Y  +G
Sbjct: 570 LVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSG 629

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  L ++ EM    VKP  +TY+ +LD +  A R    K ++ EM D+G + + +TY 
Sbjct: 630 KIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYK 689

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            LL+   R    ++ ++++ ++     +  +T+ NT++     V   +EA ++F  + S+
Sbjct: 690 ILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAI-ST 748

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               P+  T+  MI      G V EA+ MF+ M ++G  P+  +L  +I+      +  D
Sbjct: 749 SGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRML---LQKGD 805

Query: 465 VVRA 468
           +V+A
Sbjct: 806 IVKA 809



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 143/297 (48%), Gaps = 36/297 (12%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           + S +V+ +N  +  F K  ++ KA  L ++M+ +GV+PD VT+++++         +KA
Sbjct: 259 RCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKA 318

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
                +M   G +PD LTY+++I  Y  +G+               W+     F      
Sbjct: 319 ELVLRQMVDKGVEPDGLTYTAIIHGYSCSGH---------------WKESAKMF------ 357

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
                          +M + G+ P ++T+N+ + ++ +  R    + I++ MT  G  P+
Sbjct: 358 --------------RKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPD 403

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             +Y+ LL  Y       D  +++  M +KG+  +   +N L++  A  G  DEA  +F 
Sbjct: 404 LVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFT 463

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           +M+  +  +PD  T+S++I+     G++++A   F++M+  G EPN  V  SLI  +
Sbjct: 464 EMQ-GQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGF 519



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 164/364 (45%), Gaps = 13/364 (3%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LF  M D+G+  +   F+ LIS      + ++A+  F  M   G  PD +TYS++I A+ 
Sbjct: 426 LFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFC 485

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNM 305
           R G +  A   + +  +     +   + +LI  +   G+      +  EM + G+ +PN+
Sbjct: 486 RMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNI 545

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           + +++++ ++    R      ++  +   G  P   T+ SL+  Y      E    V   
Sbjct: 546 VFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDA 605

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M   G++  V  YNTL++     G  D+   +F +M   +  +P + T+S ++      G
Sbjct: 606 MVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLH-KKVKPTTVTYSIVLDGLFHAG 664

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 485
           + S A+ MF+EM+++G   ++     L++   +   TD+ +   ++L  +    D     
Sbjct: 665 RTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILN 724

Query: 486 CLLNVMTQT-PKEELGKLVECVEKSN-----SKLGYVVKLLLEEQDIEGDFKKEATELFN 539
            ++N + +   +EE   L   +  S      S  G ++  LL+E  +E     EA  +F+
Sbjct: 725 TVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVE-----EADTMFS 779

Query: 540 SISK 543
           S+ K
Sbjct: 780 SMEK 783



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/220 (20%), Positives = 103/220 (46%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ +N  +  +     ++KA  + D M+  G++PD VT++TL+S    +   +  +  F 
Sbjct: 580 IVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFR 639

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M      P  +TYS ++D    AG    A  ++    +    +D + +  L+K      
Sbjct: 640 EMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRND 699

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  + ++ ++ A+  K ++   N +++ + + +R  +   ++  ++ +GL PN +TY 
Sbjct: 700 LTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYG 759

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
            ++    +    E+  +++  M++ G   S  L N ++ M
Sbjct: 760 VMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRM 799



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 77/185 (41%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +  + K   +D    LF +ML + VKP  VT+S ++         + A + F
Sbjct: 614 DVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMF 673

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G   D  TY  ++    R    + A  L+ +      + D    +T+I      
Sbjct: 674 HEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKV 733

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              +   +++  +   G+ PN+ TY  ++  + +     +  T++  M  +G +P+    
Sbjct: 734 RRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLL 793

Query: 344 ASLLR 348
             ++R
Sbjct: 794 NDIIR 798


>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Glycine max]
          Length = 832

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 157/331 (47%), Gaps = 1/331 (0%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K + + +V+ +   + ++  C  ++  E  F+ M+  G+KP+ V+++ LI       + N
Sbjct: 321 KSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDN 380

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +A  +F  +   G  PD ++Y+S+++AYGR+     A  ++DR +  K + +  +++ LI
Sbjct: 381 EAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALI 440

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             YG+ G     + +  EM+  G++PN+++   LL   GR  R  ++ T+       G+ 
Sbjct: 441 DAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIK 500

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
            N   Y + + +       +  + +Y+ M++K ++     Y  L++ C  +    EA   
Sbjct: 501 LNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSF 560

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            E++   +        +SS I   S +G++ EAE+ FN M  +G  P++   T+++  Y 
Sbjct: 561 MEEIMHLK-LPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYN 619

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
            A+  +        +    I  D   C  L+
Sbjct: 620 AAENWEKAYALFEEMEASSIKLDTIACAALM 650



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 134/283 (47%), Gaps = 7/283 (2%)

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FS 274
           N+   W +   ++    D   Y+ MI  + R    + A GL+     ++WR  P+   ++
Sbjct: 135 NRVFRWLKNQKNYRARND--IYNMMIRLHARHNRTDQARGLFFEM--QEWRCKPDVETYN 190

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            +I  +G AG +   +N+ ++M    + P+  TYNNL++  G +    +   + K+MT+N
Sbjct: 191 AIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTEN 250

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G+ P+  T+  +L A+         LS +  MK   ++   T  N ++     +   D+A
Sbjct: 251 GVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKA 310

Query: 395 FEIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
            EIF  M+  ++ C PD  TF+S+I + S  G+V   EA FN M+  G +PN+    +LI
Sbjct: 311 IEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALI 370

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
             Y      ++     N + + G  PD      LLN   ++ K
Sbjct: 371 GAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQK 413



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 142/293 (48%), Gaps = 9/293 (3%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
            +  +  N  ++ +I     +N  ++A   F  M  + C PD  TY+++I+A+GRAG   
Sbjct: 144 QKNYRARNDIYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNAIINAHGRAGQWR 203

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  + D           + ++ LI   G++GN+   LNV ++M   GV P+++T+N +L
Sbjct: 204 WAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIIL 263

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                  +  +  + ++ M    + P+  T   ++    + R  +  + ++  M+EK  +
Sbjct: 264 SAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSE 323

Query: 373 -----LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
                ++ T    L ++C  V   + AF    +M  +E  +P+  +++++I   + RG  
Sbjct: 324 CTPDVVTFTSIIHLYSVCGQVENCEAAF----NMMIAEGLKPNIVSYNALIGAYAARGMD 379

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +EA   FNE+ + GF P++   TSL+  YG++Q+     +  +R+    + P+
Sbjct: 380 NEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPN 432



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 4/240 (1%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           M + GV PD VT + ++S  +     +KA+ +FE M      PD  T + +I    +   
Sbjct: 247 MTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQ 306

Query: 251 VEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
            + A  +++  R +K    P+   F+++I LY   G  + C   +  M A G+KPN+++Y
Sbjct: 307 YDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSY 366

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N L+          +    + E+  NG  P+  +Y SLL AYGR++       ++  MK 
Sbjct: 367 NALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKR 426

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS-CRGKV 427
             ++ ++  YN L+      G   +A +I  +M+  E  QP+  +  +++  C  C  KV
Sbjct: 427 NKLKPNLVSYNALIDAYGSNGLLADAIKILREME-QEGIQPNVVSICTLLAACGRCSRKV 485



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 96/452 (21%), Positives = 169/452 (37%), Gaps = 108/452 (23%)

Query: 136 VIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD-- 193
           +I L+   N    A  L +   + +   +V  YN  +    +      A  + DDML   
Sbjct: 157 MIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNAIINAHGRAGQWRWAMNIMDDMLRAA 216

Query: 194 ---------------------------------RGVKPDNVTFSTLISCARMNNLPNKAV 220
                                             GV PD VT + ++S  +     +KA+
Sbjct: 217 IPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKAL 276

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIK 278
            +FE M      PD  T + +I    +    + A  +++  R +K    P+   F+++I 
Sbjct: 277 SYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIH 336

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYN----------------------------- 309
           LY   G  + C   +  M A G+KPN+++YN                             
Sbjct: 337 LYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRP 396

Query: 310 ------NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
                 +LL+  GR+++P + + I+  M  N L PN  +Y +L+ AYG      D + + 
Sbjct: 397 DIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKIL 456

Query: 364 REMKEKGMQ-----------------------------------LSVTLYNTLLAMCADV 388
           REM+++G+Q                                   L+   YN  +  C +V
Sbjct: 457 REMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNV 516

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G  D+A  +++ M+  +  + DS T++ +I+ C    K  EA +   E++      +  V
Sbjct: 517 GEYDKAIGLYKSMRKKK-IKTDSVTYTVLISGCCKMSKYGEALSFMEEIMHLKLPLSKEV 575

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +S I  Y K  +  +     N +   G  PD
Sbjct: 576 YSSAICAYSKQGQIVEAESTFNLMKSSGCYPD 607



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/398 (18%), Positives = 152/398 (38%), Gaps = 74/398 (18%)

Query: 155 FTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
           F N++K +    +++ Y   +  + + +   KA ++FD M    +KP+ V+++ LI    
Sbjct: 385 FFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYG 444

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR------------------------ 247
            N L   A++    M   G  P+ ++  +++ A GR                        
Sbjct: 445 SNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTV 504

Query: 248 -----------AGNVEMAFGLYDRARNEKWRIDPNAFSTLIK------------------ 278
                       G  + A GLY   R +K + D   ++ LI                   
Sbjct: 505 AYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEI 564

Query: 279 -----------------LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
                             Y   G      + +  MK+ G  P+++TY  +LD    A+  
Sbjct: 565 MHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNAAENW 624

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
            +   +++EM  + +  +    A+L+R++ +       LS+   M+EK +  S T++  +
Sbjct: 625 EKAYALFEEMEASSIKLDTIACAALMRSFNKGGQPGRVLSLAESMREKEIPFSDTIFFEM 684

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           ++ C+ +     A ++ + ++ S      S   +  +      GK+     +F +ML +G
Sbjct: 685 VSACSILQDWRTAVDMIKYIEPSLPV-ISSGCLNQFLHSLGKSGKIETMLKLFFKMLASG 743

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
            + NL   + L++    +      +  L  + + GI P
Sbjct: 744 ADVNLNTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHP 781



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 115/286 (40%), Gaps = 70/286 (24%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNN---------- 214
           + YN  +       + DKA  L+  M  + +K D+VT++ LIS C +M+           
Sbjct: 504 VAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEE 563

Query: 215 -----LP----------------NKAVEW---FERMPSFGCDPDALTYSSMIDAYGRAGN 250
                LP                 + VE    F  M S GC PD +TY++M+DAY  A N
Sbjct: 564 IMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNAAEN 623

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV--------- 301
            E A+ L++       ++D  A + L++ +   G     L++ E M+   +         
Sbjct: 624 WEKAYALFEEMEASSIKLDTIACAALMRSFNKGGQPGRVLSLAESMREKEIPFSDTIFFE 683

Query: 302 -------------KPNMITY-------------NNLLDTMGRAKRPWQVKTIYKEMTDNG 335
                          +MI Y             N  L ++G++ +   +  ++ +M  +G
Sbjct: 684 MVSACSILQDWRTAVDMIKYIEPSLPVISSGCLNQFLHSLGKSGKIETMLKLFFKMLASG 743

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
              N NTY+ LL+    +      L V + M++ G+  S  +Y+ +
Sbjct: 744 ADVNLNTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHPSKEMYHDI 789


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 166/361 (45%), Gaps = 9/361 (2%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A   +  Y V M    + R  +     F  +L  G+K D    +T++ C       + AV
Sbjct: 4   APPTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAV 63

Query: 221 E-WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLI 277
           +    RM   GC PDA +Y+ ++         + A  L      E+    P+   ++T+I
Sbjct: 64  KVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVI 123

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             +   G      N+Y EM   G  P+++T+N++++ + +A+     + + ++M DNG+ 
Sbjct: 124 HGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVP 183

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           PN  TY S++  Y      E+   ++REM  +G+   +  +N+ +      G + EA EI
Sbjct: 184 PNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEI 243

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           F  M +++  +P+  T+  ++   +  G  ++  + FN M   G   N  V T LI  Y 
Sbjct: 244 FYSM-AAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYA 302

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVV 517
           K    D+ +  L+ +   G++PD      L++ + +     +G+L + V+K N  +G  V
Sbjct: 303 KRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCR-----MGRLADAVDKFNQMIGTGV 357

Query: 518 K 518
           +
Sbjct: 358 Q 358



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 150/318 (47%), Gaps = 2/318 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +N  +    K R +D AE L   M+D GV P+ VT++++I          +A + F
Sbjct: 150 DVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMF 209

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  PD ++++S +D+  + G  + A  ++     +  R +   +  L+  Y T 
Sbjct: 210 REMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATE 269

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G F   ++ +  MK  G+  N + +  L+D   +     +   I  EM   GLSP+  TY
Sbjct: 270 GCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTY 329

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           ++L+ A  R     D +  + +M   G+Q +  +Y++L+      G   +A E+  +M +
Sbjct: 330 STLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMN 389

Query: 404 SENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           +   +P+   F+S++ +IC   G+V +A  +F+ + + G   ++ +  +LI  Y      
Sbjct: 390 NGIPRPNIAFFNSIVHSICK-EGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEM 448

Query: 463 DDVVRALNRLPELGITPD 480
                 L+ +   GI PD
Sbjct: 449 GKAFSVLDAMISAGIGPD 466



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 137/280 (48%), Gaps = 2/280 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGV-KPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++Y+  ++ F    DL KA+ L  +M++ G+ +P+   F++++           A   F+
Sbjct: 362 VVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFD 421

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G   D + ++++ID Y   G +  AF + D   +     D   ++TL+  Y  +G
Sbjct: 422 LVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSG 481

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  LN++ EM    +KP  +TYN +LD + RA R    + +  EM   G + +  TY 
Sbjct: 482 RIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYN 541

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            +L+   R    ++ + +++++    ++ ++T  NT++     V   +EA ++F  + S 
Sbjct: 542 IILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAI-SD 600

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
               P++ T+  MI      G V EA+ MF+ M ++G  P
Sbjct: 601 SGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAP 640



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 135/297 (45%), Gaps = 2/297 (0%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A  +F  M  +G +P+ VT+  L+            + +F  M   G   + L ++ +I
Sbjct: 239 EAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILI 298

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
           DAY + G ++ A  +    + +    D   +STLI      G     ++ + +M   GV+
Sbjct: 299 DAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQ 358

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRARYGEDTLS 361
           PN + Y++L+          + K +  EM +NG+  PN   + S++ +  +     D   
Sbjct: 359 PNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHH 418

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           ++  +K+ G +  + ++NTL+     VG   +AF + + M S+    PD++T+++++   
Sbjct: 419 IFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISA-GIGPDTFTYNTLVNGY 477

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
              G++ +   +F EM +   +P       ++    +A RT    + L+ +   G T
Sbjct: 478 FKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTT 534



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 100/207 (48%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I++N  +  +    ++ KA  + D M+  G+ PD  T++TL++    +   +  +  F
Sbjct: 431 DIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLF 490

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M      P  +TY+ ++D   RAG    A  +          +    ++ ++K     
Sbjct: 491 REMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRN 550

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D  + +++++  + VK N+ T N ++++M   +R  + K ++  ++D+GL PN +TY
Sbjct: 551 NCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTY 610

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKG 370
             ++R   +    E+  +++  M++ G
Sbjct: 611 GIMIRNLLKEGSVEEADNMFSSMEKSG 637


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 154/315 (48%), Gaps = 2/315 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRG-VKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           Y   +  + K   +D+A ++FD+ML +G VKP+ V ++ LI         + A+ + +RM
Sbjct: 224 YGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRM 283

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G      TY+ ++ A    G    A+ L +    +   +D   ++ LI  +   GN 
Sbjct: 284 VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNV 343

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              L ++E M   GV+  ++TY +L+  + +  +  +   ++ E    G+ P+   Y +L
Sbjct: 344 KKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 403

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + ++  +   +    +  EM++K +      YNTL+     +G  DEA ++ ++M +   
Sbjct: 404 INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM-TKRG 462

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            QPD  T++++I+  S +G V +A  + NEM+  GF P L    +LIQ   K  + DD  
Sbjct: 463 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 522

Query: 467 RALNRLPELGITPDD 481
             +  + E GITPDD
Sbjct: 523 NMVKEMVENGITPDD 537



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 139/299 (46%), Gaps = 11/299 (3%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LF DM    +     TF+ ++        P +A+E   +MP     P+A+TY+++I  + 
Sbjct: 141 LFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFC 196

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIG-VKP 303
             G V+ A  +  R   E+  I PN ++  T+I  +   G  D  + V++EM   G VKP
Sbjct: 197 SRGRVQAALDIM-REMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKP 255

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKE-MTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
             + YN L+       +      +Y++ M + G++    TY  L+ A      G +   +
Sbjct: 256 EAVMYNALIGGYCDQGK-LDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 314

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
             EM  KG+ L V  YN L+      G   +A EIFE+M S    +    T++S+I   S
Sbjct: 315 VEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENM-SRRGVRATVVTYTSLIYALS 373

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
            +G+V E + +F+E +  G  P+L +  +LI  +  +   D     +  + +  I PDD
Sbjct: 374 KKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 432



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 1/236 (0%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A  L ++M  +G+  D  T++ LI+         KA+E FE M   G     +TY+S+I
Sbjct: 310 EAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLI 369

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            A  + G V+    L+D A     R D   ++ LI  + T+GN D    +  EM+   + 
Sbjct: 370 YALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIA 429

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P+ +TYN L+  +    R  + + +  EMT  G+ P+  TY +L+  Y      +D L +
Sbjct: 430 PDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRI 489

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
             EM  KG   ++  YN L+      G  D+A  + ++M  +    PD  T+ S+I
Sbjct: 490 RNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN-GITPDDSTYISLI 544



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 111/257 (43%), Gaps = 12/257 (4%)

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           L +Y  MK++ +  +  + + LL  +  A        ++ +M    L     T+  +LR 
Sbjct: 108 LRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLRH 163

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
              A      L + R+M       +   YNT++A     G    A +I  +M+      P
Sbjct: 164 LCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAP 219

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           + +T+ ++I+     G+V EA  +F+EML  G  +P   +  +LI  Y    + D  +  
Sbjct: 220 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 279

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG-YVVKLLLEEQDI 526
            +R+ E G+         L++ +    +  E  +LVE +      L  +   +L+     
Sbjct: 280 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCK 339

Query: 527 EGDFKKEATELFNSISK 543
           EG+ KK A E+F ++S+
Sbjct: 340 EGNVKK-ALEIFENMSR 355


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 166/359 (46%), Gaps = 16/359 (4%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S +V+ ++V +    K     +AE L+++ML RG+ P+ +T++++I      N  + A
Sbjct: 313 KMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAA 372

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              F  M + GC PD +T+S +ID Y  A  V+    L           +   ++TLI  
Sbjct: 373 ERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHG 432

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQV-KTIYKEMTD-- 333
           +   GN +  L++ +EM + GV PN++T N LLD +   G+ K   ++ K + K   D  
Sbjct: 433 FCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLD 492

Query: 334 -----NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
                N + P+  TY  L+          +   +Y EM  +G+      YN+++      
Sbjct: 493 ASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQ 552

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
              DEA ++F+ M  S+   PD  TF+++I      G+V +   +F EM   G   N   
Sbjct: 553 SRLDEATQMFDSM-GSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAIT 611

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT-PKEELGKLVECV 506
             +LI  + +    +  +     +   G+ PD      + N++T    KEEL + V+C+
Sbjct: 612 YRTLIHGFCQVGNINGALDIFQEMISSGVYPDTI---TIRNMLTGLWSKEELKRAVQCL 667



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 153/314 (48%), Gaps = 6/314 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           + + +K F  C  L  A   F  +   G  P  VTFSTL+    + +  ++A+ +F ++ 
Sbjct: 114 FTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQI- 172

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C P+ + ++++++   R G V  A  L DR   +  + +   + T++      G+  
Sbjct: 173 ---CKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTV 229

Query: 288 GCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
             LN+  +M+ +  +KPN++ Y+ ++D + +  R    + ++ EM + G+SPN  TY  +
Sbjct: 230 SALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCM 289

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  +  +    +   + REM E+ M   V  ++ L+      G   EA E++ +M     
Sbjct: 290 INGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEML-PRG 348

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             P++ T++SMI   S + ++  AE MF  M   G  P++   + LI  Y  A+R DD +
Sbjct: 349 IIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGM 408

Query: 467 RALNRLPELGITPD 480
           + L+ +   G+  +
Sbjct: 409 KLLHEMSRRGLVAN 422



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 145/330 (43%), Gaps = 12/330 (3%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  +  YN  +  F       +A+RL  +M +R + PD VTFS LI+         +A E
Sbjct: 280 SPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEE 339

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            +  M   G  P+ +TY+SMID + +   ++ A  ++     +    D   FS LI  Y 
Sbjct: 340 LYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYC 399

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A   D  + +  EM   G+  N ITY  L+    +         + +EM  +G+ PN  
Sbjct: 400 GAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVV 459

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQL-----------SVTLYNTLLAMCADVGY 390
           T  +LL         +D L +++ M++  M L            V  YN L+    + G 
Sbjct: 460 TCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGK 519

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
             EA E++E+M       PD+ T++S+I     + ++ EA  MF+ M   GF P++   T
Sbjct: 520 FSEAEELYEEM-PHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFT 578

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +LI  Y K  R  D +     +   GI  +
Sbjct: 579 TLINGYCKVGRVGDGLEVFCEMGRRGIVAN 608



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 138/284 (48%), Gaps = 14/284 (4%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AA  + Y       S +VI +++ +  +   + +D   +L  +M  RG+  + +T++TLI
Sbjct: 371 AAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLI 430

Query: 208 -SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
               ++ NL N A++  + M S G  P+ +T ++++D     G ++ A  ++   +  K 
Sbjct: 431 HGFCQLGNL-NAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKM 489

Query: 267 RIDPN-----------AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            +D +            ++ LI      G F     +YEEM   G+ P+ ITYN+++D +
Sbjct: 490 DLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGL 549

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +  R  +   ++  M   G SP+  T+ +L+  Y +     D L V+ EM  +G+  + 
Sbjct: 550 CKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANA 609

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
             Y TL+     VG  + A +IF++M SS    PD+ T  +M+T
Sbjct: 610 ITYRTLIHGFCQVGNINGALDIFQEMISS-GVYPDTITIRNMLT 652



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 148/330 (44%), Gaps = 18/330 (5%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI----SCARMNNLPNKAV 220
           V++Y+  +    K      A+ LF +M ++G+ P+  T++ +I    S  R +       
Sbjct: 248 VVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLR 307

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E FER  S    PD +T+S +I+A  + G    A  LY+         +   ++++I  +
Sbjct: 308 EMFERKMS----PDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGF 363

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
                 D    ++  M   G  P++IT++ L+D    AKR      +  EM+  GL  N 
Sbjct: 364 SKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANT 423

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY +L+  + +       L + +EM   G+  +V   NTLL    + G   +A E+F+ 
Sbjct: 424 ITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKV 483

Query: 401 MKSSE----------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
           M+ S+          + +PD  T++ +I      GK SEAE ++ EM   G  P+     
Sbjct: 484 MQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYN 543

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           S+I    K  R D+  +  + +   G +PD
Sbjct: 544 SVIDGLCKQSRLDEATQMFDSMGSKGFSPD 573



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 4/302 (1%)

Query: 197 KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256
           KP+ + F+TL++         +AV   +RM   G  P+ +TY +++D   + G+   A  
Sbjct: 174 KPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALN 233

Query: 257 LYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
           L  R   E  RI PN   +S +I      G      N++ EM+  G+ PN+ TYN +++ 
Sbjct: 234 LL-RKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMING 292

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
              + R  + + + +EM +  +SP+  T++ L+ A  +     +   +Y EM  +G+  +
Sbjct: 293 FCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPN 352

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
              YN+++   +     D A  +F  M +++ C PD  TFS +I       +V +   + 
Sbjct: 353 TITYNSMIDGFSKQNRLDAAERMFYLM-ATKGCSPDVITFSILIDGYCGAKRVDDGMKLL 411

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           +EM   G   N    T+LI  + +    +  +  L  +   G+ P+   C  LL+ +   
Sbjct: 412 HEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNN 471

Query: 495 PK 496
            K
Sbjct: 472 GK 473



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/297 (20%), Positives = 127/297 (42%), Gaps = 9/297 (3%)

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           + A++ F  M      P  + +  ++    R    ++   L+ +    +   +  +F+ L
Sbjct: 58  DDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTIL 117

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           IK + +       L+ + ++  +G  P+++T++ LL  +    R  +    + ++     
Sbjct: 118 IKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQIC---- 173

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            PN   + +L+    R     + +++   M E G+Q +   Y T++     +G T  A  
Sbjct: 174 KPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALN 233

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           +   M+     +P+   +S++I      G+ ++A+ +F+EM E G  PNLF    +I  +
Sbjct: 234 LLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGF 293

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL 513
             + R  +  R L  + E  ++PD      L+N + +      GK  E  E  N  L
Sbjct: 294 CSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKE-----GKFFEAEELYNEML 345


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 154/331 (46%), Gaps = 2/331 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEW 222
           +V  Y   +  + +    +KA  LF+ M + G  P  VT++ ++    +M     K +  
Sbjct: 216 DVRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGV 275

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            E M S G   D  T S+++ A  R G +  A   +   ++  +      ++ L++++G 
Sbjct: 276 LEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGK 335

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           AG +   L+V +EM+      + +TYN L+    RA    +   + + MT  G+ PN  T
Sbjct: 336 AGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAIT 395

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +++ AYG+A   ++ L ++  MKE G   +   YN +L+M      ++E  ++  DMK
Sbjct: 396 YTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMK 455

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           S+  C P+  T+++++ +C  +G       +F EM   GFEP+     +LI  YG+    
Sbjct: 456 SN-GCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSE 514

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
            D  +    +   G          LLN + +
Sbjct: 515 VDASKMYGEMTRAGFNACVTTYNALLNALAR 545



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 146/311 (46%), Gaps = 2/311 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKC-RDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A+ L     ++  S  ++ YNV + VF K  R   K   + ++M  +G+K D  T ST++
Sbjct: 236 AINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSKGLKFDEFTCSTVL 295

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           S      L  +A ++F  + S G +P  +TY++++  +G+AG    A  +          
Sbjct: 296 SACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCP 355

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   ++ L+  Y  AG       V E M   GV PN ITY  ++D  G+A +  +   +
Sbjct: 356 ADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKL 415

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           +  M + G  PN  TY ++L   G+     + + +  +MK  G   +   +NT+LA+C +
Sbjct: 416 FYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGN 475

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G       +F +MKS    +PD  TF+++I+     G   +A  M+ EM  AGF   + 
Sbjct: 476 KGMDKFVNRVFREMKSC-GFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVT 534

Query: 448 VLTSLIQCYGK 458
              +L+    +
Sbjct: 535 TYNALLNALAR 545



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 166/359 (46%), Gaps = 16/359 (4%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           KL   KEV+L N  ++     + L +    FD +    +  D V+   L+     +    
Sbjct: 109 KLLCKKEVVLVNSIVE-----QPLPRLSSFFDSVKSELLTTDLVS---LVKGLDDSGHWE 160

Query: 218 KAVEWFERMP----SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           +AV  FE +     S     D      ++   GR     +A  L D+   + + +D  A+
Sbjct: 161 RAVFLFEWLVLSSNSGALKLDHHVIEILVRILGRESQYSVAAKLLDKIPLQDYMLDVRAY 220

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMT 332
           +T++  Y   G ++  +N++E MK +G  P ++TYN +LD  G+  R W ++  + +EM 
Sbjct: 221 TTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLEEMR 280

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             GL  +  T +++L A  R     +    + E+K  G +     YN LL +    G   
Sbjct: 281 SKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYT 340

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           EA  + ++M+ + NC  DS T++ ++   +  G   EA  +   M + G  PN    T++
Sbjct: 341 EALSVLKEMEEN-NCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTV 399

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE-ELGKLVECVEKSN 510
           I  YGKA + D+ ++    + E G  P+      +L+++ +  +  E+ K++ C  KSN
Sbjct: 400 IDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKML-CDMKSN 457



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 162/400 (40%), Gaps = 40/400 (10%)

Query: 119 VFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFR 176
           V   +R  G  F E  C  +L+          A  +F        E   + YN  ++VF 
Sbjct: 275 VLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFG 334

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K     +A  +  +M +     D+VT++ L++         +A    E M   G  P+A+
Sbjct: 335 KAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAI 394

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           TY+++IDAYG+AG  + A  L+   +      +   ++ ++ + G     +  + +  +M
Sbjct: 395 TYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDM 454

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           K+ G  PN  T+N +L   G       V  +++EM   G  P+ +T+ +L+ AYGR    
Sbjct: 455 KSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSE 514

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            D   +Y EM   G    VT YN LL   A  G       +  DMKS +  +P   ++S 
Sbjct: 515 VDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKS-KGFKPTETSYSL 573

Query: 417 MITICSCRG------------------------------------KVSEAEAMFNEMLEA 440
           M+  C  +G                                     ++ +E  F    + 
Sbjct: 574 MLQ-CYAKGGNYLGIERIEEGINEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKH 632

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           G++P++ +  S++  + +    D     L  + E G+ PD
Sbjct: 633 GYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPD 672



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 149/331 (45%), Gaps = 1/331 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L Y   +         YN  + +  K    ++  ++  DM   G  P+  T++T+++
Sbjct: 412 ALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILA 471

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 +       F  M S G +PD  T++++I AYGR G+   A  +Y       +  
Sbjct: 472 LCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNA 531

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
               ++ L+      G++    NV  +MK+ G KP   +Y+ +L    +      ++ I 
Sbjct: 532 CVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIE 591

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           + + +  + P+W    +LL A  + R    +   +   K+ G +  + ++N++L++    
Sbjct: 592 EGINEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRN 651

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
              D+A  I + +   +   PD  T++S++ +   RG+  +AE +   + ++  +P+L  
Sbjct: 652 NMYDQAEGILQSIH-EDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVS 710

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             ++I+ + +     + VR L+ + E GI P
Sbjct: 711 YNTVIKGFCRKGLMQEAVRMLSEMTERGIRP 741



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 132/273 (48%), Gaps = 15/273 (5%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           V  YN  +    +  D    E +  DM  +G KP   ++S ++ C A+  N     +E  
Sbjct: 533 VTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNY--LGIERI 590

Query: 224 ERMPSFG-CDPDALTYSSMIDAYGR----AGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           E   + G   P  +   +++ A  +    AG+ E AF L+   +   ++ D   F++++ 
Sbjct: 591 EEGINEGQIFPSWMLLRTLLLANFKCRALAGS-ERAFTLF---KKHGYKPDMVIFNSMLS 646

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
           ++     +D    + + +   G+ P+++TYN+L+D   R    W+ + I K +  + L P
Sbjct: 647 IFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKP 706

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  +Y ++++ + R    ++ + +  EM E+G++  +  YNT ++    +G   E  ++ 
Sbjct: 707 DLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGEIEDVI 766

Query: 399 EDMKSSENCQPDSWTFSSMITICSCR-GKVSEA 430
           E M +  +C+P+  TF  M+    CR GK SEA
Sbjct: 767 ECM-AKNDCRPNELTF-KMVVDGYCRAGKYSEA 797



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/340 (19%), Positives = 142/340 (41%), Gaps = 37/340 (10%)

Query: 179 RDLDK-AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
           + +DK   R+F +M   G +PD  TF+TLIS          A + +  M   G +    T
Sbjct: 476 KGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTT 535

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM- 296
           Y+++++A  R G+      +    +++ ++    ++S +++ Y   GN+ G   + E + 
Sbjct: 536 YNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGIN 595

Query: 297 ----------------------------------KAIGVKPNMITYNNLLDTMGRAKRPW 322
                                             K  G KP+M+ +N++L    R     
Sbjct: 596 EGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYD 655

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           Q + I + + ++GL+P+  TY SL+  Y R         + + +++  ++  +  YNT++
Sbjct: 656 QAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVI 715

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
                 G   EA  +  +M +    +P  +T+++ ++  +  G   E E +   M +   
Sbjct: 716 KGFCRKGLMQEAVRMLSEM-TERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKNDC 774

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
            PN      ++  Y +A +  + +  ++++       DD+
Sbjct: 775 RPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDPCFDDQ 814



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 49/99 (49%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  +K F +   + +A R+  +M +RG++P   T++T +S      +  +  +  
Sbjct: 707 DLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGEIEDVI 766

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           E M    C P+ LT+  ++D Y RAG    A     + +
Sbjct: 767 ECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIK 805



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  M ++ +  +  KAE +   +    +KPD V+++T+I       L  +AV   
Sbjct: 672 DLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRML 731

Query: 224 ERMPSFGCDPDALTYSSMIDAY---GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
             M   G  P   TY++ +  Y   G  G +E        A+N+  R +   F  ++  Y
Sbjct: 732 SEMTERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECM--AKND-CRPNELTFKMVVDGY 788

Query: 281 GTAGNFDGCLNVYEEMK 297
             AG +   ++   ++K
Sbjct: 789 CRAGKYSEAMDFVSKIK 805


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 147/314 (46%), Gaps = 4/314 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  + +  K R+ D   ++ D M  R V+    TFS LI       L ++AV  F RM 
Sbjct: 145 YNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSILIRRYVRAGLASEAVHAFNRME 204

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
            + C PD + +S +I    R      A   +D  + +K+  D   ++ L++ +  AGN  
Sbjct: 205 DYNCKPDKIAFSILISILCRKRRATEAQSFFDSLK-DKFEPDVIVYTNLVRGWCRAGNIP 263

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V+ EMK  G  PN+ TY  ++D + R  +  +   ++ EM D G  PN  T+ +LL
Sbjct: 264 EAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLL 323

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSEN 406
           R + +A   E  L VY +MK  G       YN L+ + C D G  DEA ++   M   + 
Sbjct: 324 RVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHCKD-GNLDEALKVLNSM-VKKG 381

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
           C P++ TF+ +    +    V+ A  ++ +M E   + N      L++ +   + TD V+
Sbjct: 382 CSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVL 441

Query: 467 RALNRLPELGITPD 480
           +    + E  + P+
Sbjct: 442 KLKKEMDEDDVEPN 455



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 148/307 (48%), Gaps = 1/307 (0%)

Query: 137 IILNNMTNPDTAALALTYFTN-KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           I+++ +     A  A ++F + K K   +VI+Y   ++ + +  ++ +AER+F +M   G
Sbjct: 217 ILISILCRKRRATEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAG 276

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
             P+  T++ +I          +A + F  M   GC+P+++T+++++  + +AG  E   
Sbjct: 277 CMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVL 336

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            +Y++ +      D   ++ LI+ +   GN D  L V   M   G  PN  T+N L  ++
Sbjct: 337 QVYNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSI 396

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            + +       +Y +M +     N  TY  L+R +   +  +  L + +EM E  ++ +V
Sbjct: 397 AKLRDVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNV 456

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y  L+AM   +G+ + A++ F +M   +  +P    +  ++      G++ + E +  
Sbjct: 457 NTYCVLIAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQLKKHEELVA 516

Query: 436 EMLEAGF 442
            M++ GF
Sbjct: 517 VMVDRGF 523



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 117/260 (45%), Gaps = 41/260 (15%)

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
           W    P F   P+   Y+ MID  G+  N ++ + + D  +     I    FS LI+ Y 
Sbjct: 131 WATSRPGFTHHPEP--YNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSILIRRYV 188

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AG     ++ +  M+    KP+ I ++ L+  + R +R  + ++ +  + D    P+  
Sbjct: 189 RAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLKDK-FEPDVI 247

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            Y +L+R + RA                                   G   EA  +F +M
Sbjct: 248 VYTNLVRGWCRA-----------------------------------GNIPEAERVFTEM 272

Query: 402 KSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           K +  C P+ +T++ +I  +C C G+++ A  +F EML+ G EPN     +L++ + KA 
Sbjct: 273 KVA-GCMPNVYTYTIVIDALCRC-GQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAG 330

Query: 461 RTDDVVRALNRLPELGITPD 480
           RT+ V++  N++  +G  PD
Sbjct: 331 RTEKVLQVYNQMKRMGCPPD 350



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 112/248 (45%), Gaps = 25/248 (10%)

Query: 308 YNNLLDTMGRAKR---PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           YN ++D  G+ +     WQV  +   M    +  +  T++ L+R Y RA    + +  + 
Sbjct: 145 YNEMIDLAGKVRNFDLGWQVIDL---MKARNVEISIETFSILIRRYVRAGLASEAVHAFN 201

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
            M++   +     ++ L+++        EA   F+ +K  +  +PD   +++++      
Sbjct: 202 RMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLK--DKFEPDVIVYTNLVRGWCRA 259

Query: 425 GKVSEAEAMFNEMLEAGFEPNLF----VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           G + EAE +F EM  AG  PN++    V+ +L +C G+  R  DV      + ++G  P+
Sbjct: 260 GNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRC-GQITRAHDV---FAEMLDVGCEPN 315

Query: 481 DRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG-----YVVKLLLEEQDIEGDFKKEAT 535
                 LL V  +  + E  K+++ V     ++G          L+E    +G+   EA 
Sbjct: 316 SITFNNLLRVHVKAGRTE--KVLQ-VYNQMKRMGCPPDTVTYNFLIESHCKDGNL-DEAL 371

Query: 536 ELFNSISK 543
           ++ NS+ K
Sbjct: 372 KVLNSMVK 379


>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 680

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 160/367 (43%), Gaps = 39/367 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC---------ARM------ 212
           YN  +K + +   L  AE +  +M   GVKPD  T+S LI           AR+      
Sbjct: 314 YNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEME 373

Query: 213 --NNLPNKAV------------EW------FERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
             N  PN  V            EW       + M S G  PD   Y+ MID +G+   ++
Sbjct: 374 ASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLD 433

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A   ++R  +E    D   ++TLI  +  +G  D    ++ EM+  G  P + TYN ++
Sbjct: 434 HAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMI 493

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           ++MG  +R  QV     +M   GL PN  TY +L+  YG++    D +     +K  G +
Sbjct: 494 NSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFK 553

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            + T+YN L+   A  G ++ A   F  M ++E   P     +S+I       + +EA A
Sbjct: 554 PTSTMYNALINAYAQRGLSELAVNAFRLM-TTEGLTPSLLALNSLINAFGEDRRDAEAFA 612

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL---LN 489
           +   M E   EP++   T+L++   + ++   V      +   G TPD +    L   L 
Sbjct: 613 VLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVASGCTPDRKARAMLRSALR 672

Query: 490 VMTQTPK 496
            M QT K
Sbjct: 673 YMKQTLK 679



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 161/380 (42%), Gaps = 42/380 (11%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNL--------- 215
           + YN  +    +  D++KA  L   M   G +PD V +S++I    R N +         
Sbjct: 170 LTYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLY 229

Query: 216 ---------------------------PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
                                      P +A+ +     S G +P   T  ++I A G +
Sbjct: 230 AEIETDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNS 289

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           G    A  L++  R         A++ L+K Y   G+      V  EM+  GVKP+  TY
Sbjct: 290 GRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTY 349

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           + L+D    A R    + + KEM  + + PN   ++ +L  Y      + +  V ++MK 
Sbjct: 350 SLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKS 409

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKV 427
            G+Q     YN ++         D A   FE M  SE   PD  T++++I  C C+ G+ 
Sbjct: 410 SGVQPDRHFYNVMIDTFGKYNCLDHAMATFERML-SEGIPPDIVTWNTLID-CHCKSGRH 467

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
             AE +F+EM + G+ P +     +I   G+ QR + V   L+++   G+ P+      L
Sbjct: 468 DMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTL 527

Query: 488 LNVMTQTPKEELGKLVECVE 507
           ++V  ++ +      +EC+E
Sbjct: 528 VDVYGKSGR--FSDAIECLE 545



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 145/335 (43%), Gaps = 3/335 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           L N  +  F K  D  +A R        G+ P   T   +I     +   ++A   FE +
Sbjct: 243 LMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEI 302

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G +P    Y++++  Y R G+++ A  +         + D   +S LI +Y  AG +
Sbjct: 303 RENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRW 362

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TIYKEMTDNGLSPNWNTYAS 345
           +    V +EM+A  V+PN   ++ +L    R K  WQ    + K+M  +G+ P+ + Y  
Sbjct: 363 ESARIVLKEMEASNVQPNSYVFSRILANY-RDKGEWQKSFQVLKDMKSSGVQPDRHFYNV 421

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++  +G+    +  ++ +  M  +G+   +  +NTL+      G  D A E+F +M+   
Sbjct: 422 MIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQ-R 480

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              P   T++ MI     + +  +  A  ++M   G +PN    T+L+  YGK+ R  D 
Sbjct: 481 GYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDA 540

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
           +  L  L   G  P       L+N   Q    EL 
Sbjct: 541 IECLEVLKSTGFKPTSTMYNALINAYAQRGLSELA 575



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 163/366 (44%), Gaps = 10/366 (2%)

Query: 128 DDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERL 187
           D  L  D ++  +   +P  A   L    +     K   L  V + +    R   +AE L
Sbjct: 240 DGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRT-HEAEAL 298

Query: 188 FDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWF-ERMPSFGCDPDALTYSSMIDAY 245
           F+++ + G++P    ++ L+    R  +L  K  E+    M   G  PD  TYS +ID Y
Sbjct: 299 FEEIRENGLEPRTRAYNALLKGYVRTGSL--KDAEFVVSEMEKAGVKPDEQTYSLLIDVY 356

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
             AG  E A  +      E   + PN+  FS ++  Y   G +     V ++MK+ GV+P
Sbjct: 357 AHAGRWESARIVLKEM--EASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQP 414

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           +   YN ++DT G+          ++ M   G+ P+  T+ +L+  + ++   +    ++
Sbjct: 415 DRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELF 474

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
            EM+++G    +T YN ++    +    ++       M+S +  QP+S T+++++ +   
Sbjct: 475 SEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQS-QGLQPNSITYTTLVDVYGK 533

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
            G+ S+A      +   GF+P   +  +LI  Y +   ++  V A   +   G+TP    
Sbjct: 534 SGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLA 593

Query: 484 CGCLLN 489
              L+N
Sbjct: 594 LNSLIN 599



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 105/239 (43%), Gaps = 35/239 (14%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE-- 224
            YNV +  F K   LD A   F+ ML  G+ PD VT++TLI C   +   + A E F   
Sbjct: 418 FYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEM 477

Query: 225 ---------------------------------RMPSFGCDPDALTYSSMIDAYGRAGNV 251
                                            +M S G  P+++TY++++D YG++G  
Sbjct: 478 QQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRF 537

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
             A    +  ++  ++     ++ LI  Y   G  +  +N +  M   G+ P+++  N+L
Sbjct: 538 SDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSL 597

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           ++  G  +R  +   + + M +N + P+  TY +L++A  R    +   +VY EM   G
Sbjct: 598 INAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVASG 656



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 95/196 (48%), Gaps = 3/196 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +  YN+ +    + +  ++       M  +G++P+++T++TL+     +   + A+E  E
Sbjct: 486 ITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLE 545

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            + S G  P +  Y+++I+AY + G  E+A   +     E       A ++LI  +G   
Sbjct: 546 VLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDR 605

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  V + MK   ++P+++TY  L+  + R ++  +V  +Y+EM  +G +P+    A
Sbjct: 606 RDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVASGCTPDRKARA 665

Query: 345 SLLRAYGRARYGEDTL 360
            L  A    RY + TL
Sbjct: 666 MLRSAL---RYMKQTL 678


>gi|449442096|ref|XP_004138818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Cucumis sativus]
 gi|449490234|ref|XP_004158545.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Cucumis sativus]
          Length = 823

 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/483 (22%), Positives = 219/483 (45%), Gaps = 48/483 (9%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  ++   K   L+ +   F  + D G K D  T+++LI+      LP KA E +E M 
Sbjct: 233 YNRVIQYLAKAEKLEVSFCCFKKIHDSGFKVDTQTYNSLITLFLNKGLPYKAFEIYESMA 292

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C  DA T+  MI    ++G ++ A  L+   + +K+R   N +S+L+   G AG  D
Sbjct: 293 GAECSLDASTFELMIPCLAKSGRLDAAMKLFQEMKEKKYRPAQNVYSSLVDSMGKAGRLD 352

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + +Y EM+ + ++P+ + + +L+++  +A +      ++ +M   G  PN+  Y+ ++
Sbjct: 353 TSMKIYMEMQLLELRPSALMFVSLIESHVKAGKLDTALKLWDDMKRAGFKPNFGLYSMVV 412

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            ++ ++   +  +SV+ EM++ G     + Y  LL M A  G+ D A +++  M ++   
Sbjct: 413 ESHAKSGKLDVAMSVFTEMEKAGFLPIPSTYCCLLEMQAASGHVDAAMKLYNSM-TNAGL 471

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +    T++S++T+ + +  +  A  +  EM   GF  ++   + ++  Y K    D  +R
Sbjct: 472 RLGLNTYTSLLTLLANKKLIDIAAKVLLEMKAMGFSVSVSA-SDVLMVYIKEGSVDSALR 530

Query: 468 ALNRLPELGITPD-----DRFCGCLLNVMTQT--PKEE-----------------LGKLV 503
            L  +   GI  +       F  C+   M ++  P  E                 L  LV
Sbjct: 531 WLQFMGSSGIRTNSFIIRQLFESCMKKGMYESAMPLLETYVNSAAKVDLILYTSILAHLV 590

Query: 504 ECVEKSNSKLGYVVKLLLEEQDIEGDF----------KKEAT-----ELFNSISKDVK-- 546
            C E+   +  Y++ +L   +     F          +K+       E F SI  +++  
Sbjct: 591 RCQEEQKER--YLMSILSTTKHKAHSFLCGLFTGTEQRKQPVLSFVREFFQSIDYELEES 648

Query: 547 --KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAAL 603
             K + N L++  + +  +  A  + ++    +++   I       WSL +++LS+GAAL
Sbjct: 649 SAKYFVNVLLNYLILMGQINRARCIWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAAL 708

Query: 604 TAL 606
            A+
Sbjct: 709 IAV 711



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 143/317 (45%), Gaps = 10/317 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW----- 222
           Y +      + RD D  + LFD+++      + V+FS   +  R+     KA +      
Sbjct: 195 YGLLFDGLNQRRDFDAIQLLFDEVVRDLSSDETVSFS---AYNRVIQYLAKAEKLEVSFC 251

Query: 223 -FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F+++   G   D  TY+S+I  +   G    AF +Y+     +  +D + F  +I    
Sbjct: 252 CFKKIHDSGFKVDTQTYNSLITLFLNKGLPYKAFEIYESMAGAECSLDASTFELMIPCLA 311

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            +G  D  + +++EMK    +P    Y++L+D+MG+A R      IY EM    L P+  
Sbjct: 312 KSGRLDAAMKLFQEMKEKKYRPAQNVYSSLVDSMGKAGRLDTSMKIYMEMQLLELRPSAL 371

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            + SL+ ++ +A   +  L ++ +MK  G + +  LY+ ++   A  G  D A  +F +M
Sbjct: 372 MFVSLIESHVKAGKLDTALKLWDDMKRAGFKPNFGLYSMVVESHAKSGKLDVAMSVFTEM 431

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           + +    P   T+  ++ + +  G V  A  ++N M  AG    L   TSL+      + 
Sbjct: 432 EKA-GFLPIPSTYCCLLEMQAASGHVDAAMKLYNSMTNAGLRLGLNTYTSLLTLLANKKL 490

Query: 462 TDDVVRALNRLPELGIT 478
            D   + L  +  +G +
Sbjct: 491 IDIAAKVLLEMKAMGFS 507



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 131/294 (44%), Gaps = 16/294 (5%)

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP---NWNTYASLLRAYGRARYGEDT 359
           PN   Y  L D + + +    ++ ++ E+  +  S    +++ Y  +++   +A   E +
Sbjct: 190 PNDECYGLLFDGLNQRRDFDAIQLLFDEVVRDLSSDETVSFSAYNRVIQYLAKAEKLEVS 249

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
              ++++ + G ++    YN+L+ +  + G   +AFEI+E M  +E C  D+ TF  MI 
Sbjct: 250 FCCFKKIHDSGFKVDTQTYNSLITLFLNKGLPYKAFEIYESMAGAE-CSLDASTFELMIP 308

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             +  G++  A  +F EM E  + P   V +SL+   GKA R D  ++    +  L + P
Sbjct: 309 CLAKSGRLDAAMKLFQEMKEKKYRPAQNVYSSLVDSMGKAGRLDTSMKIYMEMQLLELRP 368

Query: 480 DDRFCGCLLNVMTQTPKEELG-KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 538
                  L+    +  K +   KL + ++++  K  + +  ++ E   +      A  +F
Sbjct: 369 SALMFVSLIESHVKAGKLDTALKLWDDMKRAGFKPNFGLYSMVVESHAKSGKLDVAMSVF 428

Query: 539 NSISK----DVKKAYCNCLIDLCVNLNLLENACKLLE------LGLTLEVYTDI 582
             + K     +   YC CL+++      ++ A KL        L L L  YT +
Sbjct: 429 TEMEKAGFLPIPSTYC-CLLEMQAASGHVDAAMKLYNSMTNAGLRLGLNTYTSL 481


>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Brachypodium distachyon]
          Length = 675

 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 152/347 (43%), Gaps = 41/347 (11%)

Query: 185 ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244
           ERL  D+ +  ++PD   FS LIS      LP+ A++      + G  P +   +++I A
Sbjct: 220 ERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALDLLASAQAIGLTPRSNAVTALISA 279

Query: 245 YGRAGNVEMAFGLYDR---ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
            G AG V  A  L+     A   K R    A++ L+K Y   G+      V +EM   GV
Sbjct: 280 LGGAGRVAEAEALFLEFFLAGEIKPRT--RAYNALLKGYVKIGSLKNAEQVLDEMSDCGV 337

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP----------------NWNTYAS 345
            P+  TY+ L+D   RA R    + + KEM  +G+ P                +W    +
Sbjct: 338 APDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFA 397

Query: 346 LLR-------------------AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +LR                    +G+       +  +  M+E+G++  V  +NTL+    
Sbjct: 398 VLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHR 457

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G  D A E+FE+M+ S NC P + T++ MI +   + +    E M +EM E G  PN+
Sbjct: 458 KGGRHDRAMELFEEMRES-NCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNI 516

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
              T+L+  YG++ R  + +  +  +   G+ P       L+N   Q
Sbjct: 517 ITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQ 563



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 148/315 (46%), Gaps = 1/315 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +  + +    + A  L  +M   GVKP +  FS +++  R      KA      M 
Sbjct: 344 YSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMH 403

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  PD   Y+ MID +G+   +  A   ++R R E    D   ++TLI  +   G  D
Sbjct: 404 ASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHD 463

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + ++EEM+     P   TYN +++ +G  +R   V+T+  EM + GL PN  TY +L+
Sbjct: 464 RAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNIITYTTLV 523

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YGR+   ++ +     MK  G++ S T+Y+ L+   A  G  D A  + + M+ ++  
Sbjct: 524 DVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMR-ADGL 582

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +  +   +S++       +V EA ++   M E    P++   T+L++   + ++ D V  
Sbjct: 583 EASTVVLNSLMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTLMKALIRIEQFDKVPV 642

Query: 468 ALNRLPELGITPDDR 482
               +   G  PD +
Sbjct: 643 IYEEMITSGCAPDRK 657



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 101/259 (38%), Gaps = 70/259 (27%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
            YNV +  F K   L  A   F+ M + G++PD VT++TLI   R     ++A+E FE M
Sbjct: 413 FYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEM 472

Query: 227 PSFGCDP-----------------------------------DALTYSSMIDAYGRAGNV 251
               C P                                   + +TY++++D YGR+G  
Sbjct: 473 RESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRF 532

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV---------- 301
           + A    +  + +  +  P  +  L+  Y   G  D  LNV + M+A G+          
Sbjct: 533 KEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSL 592

Query: 302 -------------------------KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
                                    +P++ITY  L+  + R ++  +V  IY+EM  +G 
Sbjct: 593 MNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTLMKALIRIEQFDKVPVIYEEMITSGC 652

Query: 337 SPNWNTYASLLRAYGRARY 355
           +P+    A L  A    +Y
Sbjct: 653 APDRKARAMLRSALRYMKY 671



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 119/262 (45%), Gaps = 13/262 (4%)

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR---EMKEKGMQLSVTLYNTLLAMCAD 387
           + ++G  P+  +Y+ LL +    R   D   + R   +++E  ++    L++ L++  A 
Sbjct: 188 IREHGFLPDLASYSHLLASLLNTRDPPDAAILERLLGDLRESRLEPDAPLFSDLISAFAR 247

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNL 446
               D A ++    ++     P S   +++I+     G+V+EAEA+F E   AG  +P  
Sbjct: 248 AALPDAALDLLASAQAI-GLTPRSNAVTALISALGGAGRVAEAEALFLEFFLAGEIKPRT 306

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVEC 505
               +L++ Y K     +  + L+ + + G+ PD+     L++  T+  + E  + L++ 
Sbjct: 307 RAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWESARILLKE 366

Query: 506 VEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSISKDVK--KAYCNCLIDLCVNLNL 562
           +E    K   YV   +L      GD++K    L    +  V+  + + N +ID     N 
Sbjct: 367 MEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNC 426

Query: 563 LENAC----KLLELGLTLEVYT 580
           L +A     ++ E G+  +V T
Sbjct: 427 LGHAMDAFNRMREEGIEPDVVT 448



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 60/140 (42%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I Y   + V+ +     +A    + M   G+KP    +  L++      L + A+   +
Sbjct: 516 IITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVK 575

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M + G +   +  +S+++A+G    V  AF +    +    R D   ++TL+K      
Sbjct: 576 AMRADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTLMKALIRIE 635

Query: 285 NFDGCLNVYEEMKAIGVKPN 304
            FD    +YEEM   G  P+
Sbjct: 636 QFDKVPVIYEEMITSGCAPD 655


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 153/318 (48%), Gaps = 1/318 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V +Y   +  + + RD++ A    ++ML +G++ +   F ++IS          A  WFE
Sbjct: 166 VHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFE 225

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +  +    P  + Y+S++ AY +AGN+E    L  +   E ++ +   ++T++  +    
Sbjct: 226 KFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIR 285

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           + + CL+ +  +KA G+ P   TY  ++    +A    +   I +EM  +G+SPN   YA
Sbjct: 286 DEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYA 345

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            ++  Y R         V+ +M   G++  +  YN L+      G  D+A  + E+++++
Sbjct: 346 MIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQAN 405

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               P   T++S++      G + +A  +F+ +  AG  P +    SL+    KA++ ++
Sbjct: 406 -RLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMEN 464

Query: 465 VVRALNRLPELGITPDDR 482
               L+ +   G+ P++R
Sbjct: 465 ARLMLDEMLANGVVPNER 482



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 156/340 (45%), Gaps = 36/340 (10%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           C++ L         AL +    +K   S   ++Y + M  + +  D   A ++++DM+  
Sbjct: 311 CIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSA 370

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G+KPD VT++ L+         +KA+   E + +    P   TY+S++D Y + G+++ A
Sbjct: 371 GLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKA 430

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             ++DR                                   +K  G++P +++YN+LL  
Sbjct: 431 LEVFDR-----------------------------------IKTAGLRPGVVSYNSLLSG 455

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           + +A++    + +  EM  NG+ PN  +Y +L   Y RA   E    +++ MK++ + + 
Sbjct: 456 LAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAID 515

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           +  Y  LL  C   G    A E+F+ + +    + +  T+ +M+   + +G++S+A  + 
Sbjct: 516 IVAYGALLKACCKSGAMQRAVEVFQQI-TDAGLKHNRITYCTMLDGWARKGELSKARDLL 574

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
            +M + GF  +    TS I+   ++  T++V   L  + E
Sbjct: 575 KDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMRE 614



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 122/245 (49%), Gaps = 3/245 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERM 226
           Y   +  + K   + KA  +FD +   G++P  V++++L+S  A+   + N  +   + M
Sbjct: 414 YTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARL-MLDEM 472

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            + G  P+  +Y+++ + Y RAG+VE AFG++ R + E   ID  A+  L+K    +G  
Sbjct: 473 LANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAM 532

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              + V++++   G+K N ITY  +LD   R     + + + K+M  +G   +   Y S 
Sbjct: 533 QRAVEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSF 592

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           ++A  R+   E+       M+EK ++++   Y TL+         D+A   +E  K+S  
Sbjct: 593 IKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKAS-G 651

Query: 407 CQPDS 411
            Q DS
Sbjct: 652 LQLDS 656



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 118/257 (45%), Gaps = 1/257 (0%)

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           FE M +    P+   Y+S+I AY  A ++E A    +   ++  +++   F ++I  Y +
Sbjct: 154 FEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYAS 213

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           AGN +   + +E+ KA  + P  I YN+++    +A     V+ +  +M + G   N   
Sbjct: 214 AGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGL 273

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y ++L  +   R  E  LS +  +K  G+  +   Y  ++ +    G   +A +I E+M 
Sbjct: 274 YTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEM- 332

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
                 P+   ++ ++   +  G  + A  ++ +M+ AG +P++     L+  + KA R 
Sbjct: 333 DKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRM 392

Query: 463 DDVVRALNRLPELGITP 479
           D  +  L  +    + P
Sbjct: 393 DKALGVLENIQANRLLP 409



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 104/212 (49%), Gaps = 5/212 (2%)

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           AGN+   +N ++ +     KP +  Y  L+D   R       +  ++ M  + + PN + 
Sbjct: 113 AGNWHKIVNAFQVID----KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHI 168

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y SL+ AY  AR  E  ++   EM  +G+QL+  ++ ++++  A  G  + A   FE  K
Sbjct: 169 YTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFK 228

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            +EN  P    ++S++      G +   EA+  +M E GF+ NL + T+++  + + +  
Sbjct: 229 -AENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDE 287

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           +  +   +RL   G++P     GC++ + T+ 
Sbjct: 288 EKCLSFFHRLKACGLSPTAATYGCIVKLFTKA 319



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 112/248 (45%), Gaps = 1/248 (0%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           P    Y  ++D Y R G+   A   ++  R    + + + +++LI  Y  A + +G +  
Sbjct: 129 PVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVAC 188

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
            EEM + G++ N   + +++     A      +  +++     L P    Y S+++AY +
Sbjct: 189 TEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQ 248

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
           A   E   ++  +M+E+G Q ++ LY T+L   A++   ++    F  +K+     P + 
Sbjct: 249 AGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKAC-GLSPTAA 307

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T+  ++ + +  G +++A  +  EM + G  PN  +   ++  Y +        +    +
Sbjct: 308 TYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDM 367

Query: 473 PELGITPD 480
              G+ PD
Sbjct: 368 VSAGLKPD 375


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 166/349 (47%), Gaps = 11/349 (3%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           C I++  + +    A A   F   L AS  V+ YN  +  + +   ++ A RL   M   
Sbjct: 101 CNILIKRLCSGGRVADAERVFAT-LGASATVVTYNTMVNGYCRAGRIEDARRLISGM--- 156

Query: 195 GVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
              PD  TF+ LI   C R   +P+ A+  F+ M   GC P  +TYS ++DA  +A    
Sbjct: 157 PFPPDTFTFNPLIRALCVR-GRVPD-ALAVFDDMLHRGCSPSVVTYSILLDATCKASGYR 214

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  L D  R +    D   ++ LI      G+ D  LN+  ++ + G KP+ +TY  +L
Sbjct: 215 QAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVL 274

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
            ++  ++R  +V+ ++ EM  N  +P+  T+ +++ +  +    +  + V   M E G  
Sbjct: 275 KSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCI 334

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAE 431
             +  Y+++L    DVG  D+A E+   +KS   C+PD+  +++++  +CS   +   AE
Sbjct: 335 PDIVTYSSILDGLCDVGRVDDAVELLSRLKSY-GCKPDTIAYTTVLKGLCSIE-QWEHAE 392

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +  EM+ +   P+     ++I    +    D  ++ + ++ E G  PD
Sbjct: 393 ELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPD 441



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 156/344 (45%), Gaps = 36/344 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD------------------------ 199
           +++ YNV +       D+D+A  +  D+   G KPD                        
Sbjct: 231 DIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELF 290

Query: 200 -----------NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
                       VTF+T+++      L ++A++  + M   GC PD +TYSS++D     
Sbjct: 291 AEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDV 350

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           G V+ A  L  R ++   + D  A++T++K   +   ++    +  EM      P+ +T+
Sbjct: 351 GRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTF 410

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N ++ ++ +     +   + ++M++NG +P+  TY S++      R  +D + +   ++ 
Sbjct: 411 NTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQS 470

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G +  +  +NTLL     V   ++A ++  +M  S+ C PD+ TF+++IT    +G + 
Sbjct: 471 YGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSD-CPPDATTFNTVITSLCQKGLLL 529

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           +A      M E G  PN      ++    KA +T + ++ L+ +
Sbjct: 530 QAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGM 573



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 139/320 (43%), Gaps = 38/320 (11%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I Y   +K        + AE L  +M+     PD VTF+T+I+      L ++A++  
Sbjct: 371 DTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVV 430

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E+M   GC+PD +TY+S+ID            GL     NE+                  
Sbjct: 431 EQMSENGCNPDIVTYNSIID------------GLC----NERC----------------- 457

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D  + +   +++ G KP+++T+N LL  +    R    + +   M  +   P+  T+
Sbjct: 458 --IDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTF 515

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +++ +  +       +   + M E G   + + YN ++      G T EA ++   M  
Sbjct: 516 NTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMT- 574

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
             N  PD  T++++I+  +  GK+ EA  +   M+  G  P+     SL     +   TD
Sbjct: 575 --NGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTD 632

Query: 464 DVVRALNRLPELGITPDDRF 483
             +R L RL ++G++PD  F
Sbjct: 633 RAIRMLCRLQDMGLSPDATF 652



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 93/207 (44%), Gaps = 9/207 (4%)

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LIK   + G       V+     +G    ++TYN +++   RA R    + +   M    
Sbjct: 104 LIKRLCSGGRVADAERVF---ATLGASATVVTYNTMVNGYCRAGRIEDARRLISGMP--- 157

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEA 394
             P+  T+  L+RA        D L+V+ +M  +G   SV  Y+ LL A C   GY  +A
Sbjct: 158 FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYR-QA 216

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
             + ++M++ + C+PD  T++ +I      G V EA  + +++   G +P+    T +++
Sbjct: 217 MVLLDEMRA-KGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLK 275

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDD 481
               ++R  +V      +      PD+
Sbjct: 276 SLCGSERWKEVEELFAEMASNKCAPDE 302



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 4/122 (3%)

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G   +V  YNT++      G  ++A  +   M       PD++TF+ +I     RG+V +
Sbjct: 125 GASATVVTYNTMVNGYCRAGRIEDARRLISGMPFP----PDTFTFNPLIRALCVRGRVPD 180

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           A A+F++ML  G  P++   + L+    KA      +  L+ +   G  PD      L+N
Sbjct: 181 ALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLIN 240

Query: 490 VM 491
            M
Sbjct: 241 AM 242



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/142 (17%), Positives = 60/142 (42%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV 196
           I+++ +        AL   +     + ++I YN  +    K   +++A  L   M+  G+
Sbjct: 552 IVVDALLKAGKTQEALKLLSGMTNGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGL 611

Query: 197 KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256
            PD +T+ +L       +  ++A+    R+   G  PDA  Y+ ++  + +    ++A  
Sbjct: 612 SPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAID 671

Query: 257 LYDRARNEKWRIDPNAFSTLIK 278
            +    +     D + +  L++
Sbjct: 672 CFAHMVSSGCMPDESTYIILLE 693


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 163/370 (44%), Gaps = 36/370 (9%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y   +  F K  D DKA   + +MLDRG+ PD VT++++I+        +KA+E  
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  PD +TY+S++  Y  +G  + A G   + R++    D   +S L+      
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       +++ M   G+KP + TY  LL          ++  +   M  NG+ P+   +
Sbjct: 315 GRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVF 374

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+ AY      +  + V+ +M+++G+  +   Y  ++ +    G  ++A   FE M  
Sbjct: 375 SILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM-I 433

Query: 404 SENCQPDSWTFSSMI-TICSC----------------------------------RGKVS 428
            E   P +  ++S+I  +C+C                                   G+V 
Sbjct: 434 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVI 493

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           E+E +F  M+  G +PN+    +LI  Y  A + D+ ++ L+ +  +G+ P+      L+
Sbjct: 494 ESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 553

Query: 489 NVMTQTPKEE 498
           N   +  + E
Sbjct: 554 NGYCKISRME 563



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 139/293 (47%), Gaps = 4/293 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLD---RGVKPDNVTFSTLISCARMNNLPNKAVE 221
           V  YN+ +K         +A  L   M D    G  PD V+++T+I+        +KA  
Sbjct: 158 VFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYS 217

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            +  M   G  PD +TY+S+I A  +A  ++ A  + +         D   +++++  Y 
Sbjct: 218 TYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYC 277

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
           ++G     +   ++M++ GV+P+++TY+ L+D + +  R  + + I+  MT  GL P   
Sbjct: 278 SSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEIT 337

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +LL+ Y       +   +   M   G+     +++ L+   A+ G  D+A  +F  M
Sbjct: 338 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKM 397

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           +  +   P++ T+ ++I I    G+V +A   F +M++ G  P   V  SLI 
Sbjct: 398 R-QQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIH 449



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 177/380 (46%), Gaps = 4/380 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP-NKAVEW 222
           E+  Y   ++ +     L +   L D M+  G+ PD+  FS LI CA  N    ++A+  
Sbjct: 335 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILI-CAYANQGKVDQAMLV 393

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F +M   G +P+A+TY ++I    ++G VE A   +++  +E        +++LI    T
Sbjct: 394 FSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCT 453

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
              ++    +  EM   G+  N I +N+++D+  +  R  + + +++ M   G+ PN  T
Sbjct: 454 CNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVIT 513

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +L+  Y  A   ++ + +   M   G++ +   Y+TL+     +   ++A  +F++M+
Sbjct: 514 YNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEME 573

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           SS    PD  T++ ++       + + A+ ++  + E+G +  L     ++    K + T
Sbjct: 574 SS-GVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLT 632

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL-GYVVKLLL 521
           DD ++    L  + +  + R    +++ + +  + +  K +     SN  +  Y    L+
Sbjct: 633 DDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLM 692

Query: 522 EEQDIEGDFKKEATELFNSI 541
            E  I     +E  +LF S+
Sbjct: 693 AENIIGQGLLEELDQLFLSM 712



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 138/342 (40%), Gaps = 46/342 (13%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFS-TLISCARMNNLPNKAVEWFERMPSFGCD---PDALT 237
           + A  +FD++L RG        +  L   AR  + P  AV  + RM   G D   PD  T
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVAR--DSPAAAVSRYNRMARAGADEVTPDLCT 89

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEM 296
           Y  +I    RAG +++ F        + +R+D  AF+ L+K L       D    V   M
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 297 KAIGVKPNMITYNNLL--------------------DTMGRAKRPWQVK----------- 325
             +G  PN+ +YN LL                    D  G    P  V            
Sbjct: 150 TELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKE 209

Query: 326 -------TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
                  + Y EM D G+ P+  TY S++ A  +A+  +  + V   M + G+      Y
Sbjct: 210 GDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTY 269

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           N++L      G   EA    + M+S +  +PD  T+S ++      G+  EA  +F+ M 
Sbjct: 270 NSILHGYCSSGQPKEAIGFLKKMRS-DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT 328

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           + G +P +    +L+Q Y       ++   L+ +   GI PD
Sbjct: 329 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPD 370



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 12/192 (6%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS----CARMN 213
           ++     VI YN  +  +     +D+A +L   M+  G+KP+ VT+STLI+     +RM 
Sbjct: 504 RIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRME 563

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           +    A+  F+ M S G  PD +TY+ ++    +      A  LY R      +I+ + +
Sbjct: 564 D----ALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTY 619

Query: 274 STLIKLYGTAGN--FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           +  I L+G   N   D  L +++ +  + +K    T+N ++D + +  R  + K ++   
Sbjct: 620 N--IILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 677

Query: 332 TDNGLSPNWNTY 343
           + NGL PN+ TY
Sbjct: 678 SSNGLVPNYWTY 689



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 90/218 (41%), Gaps = 8/218 (3%)

Query: 293 YEEMKAIG---VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           Y  M   G   V P++ TY  L+    RA R          +   G   +   +  LL+ 
Sbjct: 72  YNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 131

Query: 350 YGRARYGEDTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-- 406
               +   D +  V R M E G   +V  YN LL    D   + EA E+   M       
Sbjct: 132 LCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGG 191

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             PD  +++++I      G   +A + ++EML+ G  P++    S+I    KAQ  D  +
Sbjct: 192 SPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAM 251

Query: 467 RALNRLPELGITPDDRFCGCLLN--VMTQTPKEELGKL 502
             LN + + G+ PD      +L+    +  PKE +G L
Sbjct: 252 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFL 289


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 178/398 (44%), Gaps = 44/398 (11%)

Query: 123 LRCLGDDFLEQDCVIILNNMT--NPDTAALALTYFTNKLK---ASKEVILYNVTMKVFRK 177
           L C+ D F    C I+L  +   N    AL L +     +   ++ +V+ Y   +  F K
Sbjct: 152 LSCMPDVF---SCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFK 208

Query: 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
             D DKA   + +MLDR + PD VT+S++I+        +KA+E    M   G  P+ +T
Sbjct: 209 EGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMT 268

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           Y+S++  Y  +   + A G   + R++    D   +++L+      G       +++ M 
Sbjct: 269 YNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMT 328

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
             G++P++ TY  LL          ++  +   M  NG+ P+ + +  L+ AY +    +
Sbjct: 329 KRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVD 388

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           + + V+ +M++ G+  +V  Y  ++ +    G  D+A   FE M   E   P+   ++S+
Sbjct: 389 EAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQM-IDEGLTPNIIVYTSL 447

Query: 418 I----------------------TIC------------SCR-GKVSEAEAMFNEMLEAGF 442
           I                       IC             C+ G+V E+E +F+ M+  G 
Sbjct: 448 IHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGV 507

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +PN+   ++LI  Y  A + D+  + L+ +  +G+ PD
Sbjct: 508 KPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPD 545



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 141/287 (49%), Gaps = 4/287 (1%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           DKAE L  +MLDRG+  + + F+++I          ++ + F+ M   G  P+ +TYS++
Sbjct: 458 DKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTL 517

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           ID Y  AG ++ A  L     +   + D   ++TLI  Y      D  L +++EM + GV
Sbjct: 518 IDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGV 577

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            PN+ITYN +L  +   +R    K +Y  +T +G     +TY  +L    +    ++ L 
Sbjct: 578 SPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALR 637

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           +++ +    +QL    +N ++     VG  DEA ++F  + S+    PD  T+S M    
Sbjct: 638 MFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAAL-SANGLVPDVRTYSLMAENL 696

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
             +G + E + +F  M E G   N  +L S+++   K  +  D+ RA
Sbjct: 697 IEQGLLEELDDLFLSMEENGCTANSRMLNSIVR---KLLQRGDITRA 740



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 133/286 (46%), Gaps = 1/286 (0%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           L D M+  G+ PD+  F+ LI         ++A+  F +M   G +P+ +TY ++I    
Sbjct: 358 LLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILC 417

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           ++G+V+ A   +++  +E    +   +++LI        +D    +  EM   G+  N I
Sbjct: 418 KSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTI 477

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
            +N+++ +  +  R  + + ++  M   G+ PN  TY++L+  Y  A   ++   +   M
Sbjct: 478 FFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSM 537

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
              GM+     YNTL+     V   D+A  +F++M SS    P+  T++ ++       +
Sbjct: 538 FSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSS-GVSPNIITYNIILQGLFHTRR 596

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
            + A+ ++  + ++G +  L     ++    K   TD+ +R    L
Sbjct: 597 TAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 642



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 146/365 (40%), Gaps = 46/365 (12%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFS-TLISCARMNNLPNKAVEWFERMPSFGCD---PDALT 237
           + A  +F+++L RG        +  L   AR +  P  AV  + RM   G     P   T
Sbjct: 32  EDARHVFEELLRRGRGASIYGLNRALADVARHS--PAAAVSRYNRMARAGAGKVTPTVHT 89

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRID---------------------------- 269
           Y  +I    RAG +++ F        + +R++                            
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 270 ------PNAFSTLIKLYGTAGNFDG-----CLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
                 P+ FS  I L G             L++  + +  G  P++++Y  +++   + 
Sbjct: 150 TELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKE 209

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
               +  + Y EM D  +SP+  TY+S++ A  + +  +  + V   M + G+  +   Y
Sbjct: 210 GDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTY 269

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           N++L          EA    + M+ S+  +PD  T++S++      G+ +EA  +F+ M 
Sbjct: 270 NSILHGYCSSEQPKEAIGFLKKMR-SDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMT 328

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
           + G EP++    +L+Q Y       ++   L+ +   GI PD      L+    +  K +
Sbjct: 329 KRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVD 388

Query: 499 LGKLV 503
              LV
Sbjct: 389 EAMLV 393



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 32/185 (17%), Positives = 80/185 (43%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + YN  +  + +   +D A  LF +M+  GV P+ +T++ ++           A E +
Sbjct: 545 DCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELY 604

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             +   G   +  TY+ ++    +    + A  ++        +++   F+ +I      
Sbjct: 605 VGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKV 664

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D   +++  + A G+ P++ TY+ + + +       ++  ++  M +NG + N    
Sbjct: 665 GRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRML 724

Query: 344 ASLLR 348
            S++R
Sbjct: 725 NSIVR 729


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 159/321 (49%), Gaps = 1/321 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           + S  V+ YN  +    K + +DKA  +   M+  GV PD +T+++++     +  P +A
Sbjct: 118 RISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEA 177

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           + + ++M S G +PD +TY+S++D   + G    A  ++D       + +   + TL++ 
Sbjct: 178 IVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQG 237

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           Y T G       + + M   G+ PN   ++ L+    + ++  +   ++ +M   GL+PN
Sbjct: 238 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPN 297

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY +++    ++   ED +  + +M ++G+     +YN+L+         + A E+  
Sbjct: 298 AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELIL 357

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +M     C  ++  F+S+I      G+V E+E +F+ M+  G +P++   ++LI  Y  A
Sbjct: 358 EMLDRGICL-NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 416

Query: 460 QRTDDVVRALNRLPELGITPD 480
            + D+  + L  +  +G+ PD
Sbjct: 417 GKMDEATKLLASMVSVGMKPD 437



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 150/302 (49%), Gaps = 8/302 (2%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG--CDPDALTYS 239
           + A  +FD++L RG+ PD  +++ L++     N   +A+E    M   G  C PD ++YS
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMK 297
           ++I+ + + G+++  +  Y+   ++  RI PN   ++++I     A   D  + V   M 
Sbjct: 93  TVINGFFKEGDLDKTYSTYNEMLDQ--RISPNVVTYNSIIAALCKAQTVDKAMEVLTTMV 150

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
             GV P+ +TYN+++     + +P +     K+M  +G+ P+  TY SL+    +     
Sbjct: 151 KSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCT 210

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           +   ++  M ++G++  +T Y TLL   A  G   E   +  D+       P+ + FS +
Sbjct: 211 EARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIHPNHYVFSIL 269

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           +   + + KV EA  +F++M + G  PN     ++I    K+ R +D +    ++ + G+
Sbjct: 270 VCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGL 329

Query: 478 TP 479
           +P
Sbjct: 330 SP 331



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 140/293 (47%), Gaps = 3/293 (1%)

Query: 151 ALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ YF   +    S   I+YN  +     C   ++AE L  +MLDRG+  + + F+++I 
Sbjct: 317 AMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID 376

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    ++ + F+ M   G  PD +TYS++ID Y  AG ++ A  L     +   + 
Sbjct: 377 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKP 436

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +STLI  Y         L ++ EM++ GV P++ITYN +L  + + +R    K +Y
Sbjct: 437 DCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 496

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             +T +G     +TY  +L    + +  +D L +++ +    ++L    +N ++     V
Sbjct: 497 VGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKV 556

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           G  DEA ++F    SS    P+ WT+  M      +G + E + +F  M + G
Sbjct: 557 GRNDEAKDLFVAF-SSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 608


>gi|42570403|ref|NP_850357.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330254930|gb|AEC10024.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 683

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 152/312 (48%), Gaps = 8/312 (2%)

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEE 295
           Y+ MI  + R   V+ A GL+     +KW   P+A  +  LI  +G AG +   +N+ ++
Sbjct: 14  YNMMIRLHARHNWVDQARGLFFEM--QKWSCKPDAETYDALINAHGRAGQWRWAMNLMDD 71

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M    + P+  TYNNL++  G +    +   + K+MTDNG+ P+  T+  +L AY   R 
Sbjct: 72  MLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQ 131

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTF 414
               LS +  MK   ++   T +N ++   + +G + +A ++F  M+     C+PD  TF
Sbjct: 132 YSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTF 191

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +S++ + S +G++    A+F  M+  G +PN+    +L+  Y     +   +  L  + +
Sbjct: 192 TSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ 251

Query: 475 LGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKK 532
            GI PD     CLLN   ++ +    K V  + +   +   VV    L++     G F  
Sbjct: 252 NGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNG-FLA 310

Query: 533 EATELFNSISKD 544
           EA E+F  + +D
Sbjct: 311 EAVEIFRQMEQD 322



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 162/325 (49%), Gaps = 1/325 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   M ++    +++    +F+ M+  G+KP+ V+++ L+    ++ +   A+   
Sbjct: 187 DVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVL 246

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             +   G  PD ++Y+ ++++YGR+     A  ++   R E+ + +   ++ LI  YG+ 
Sbjct: 247 GDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSN 306

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     + ++ +M+  G+KPN+++   LL    R+K+   V T+       G++ N   Y
Sbjct: 307 GFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAY 366

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S + +Y  A   E  +++Y+ M++K ++     +  L++    +    EA    ++M+ 
Sbjct: 367 NSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMED 426

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
             +       +SS++   S +G+V+EAE++FN+M  AG EP++   TS++  Y  +++  
Sbjct: 427 L-SIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWG 485

Query: 464 DVVRALNRLPELGITPDDRFCGCLL 488
                   +   GI PD   C  L+
Sbjct: 486 KACELFLEMEANGIEPDSIACSALM 510



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 133/320 (41%), Gaps = 38/320 (11%)

Query: 184 AERLFDDMLD-----------------------------------RGVKPDNVTFSTLIS 208
           A  L DDML                                     GV PD VT + ++S
Sbjct: 65  AMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLS 124

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
             +     +KA+ +FE M      PD  T++ +I    + G    A  L++  R ++   
Sbjct: 125 AYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAEC 184

Query: 269 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
            P+   F++++ LY   G  + C  V+E M A G+KPN+++YN L+             +
Sbjct: 185 RPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALS 244

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +  ++  NG+ P+  +Y  LL +YGR+R       V+  M+++  + +V  YN L+    
Sbjct: 245 VLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYG 304

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G+  EA EIF  M+  +  +P+  +  +++  CS   K    + + +     G   N 
Sbjct: 305 SNGFLAEAVEIFRQME-QDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNT 363

Query: 447 FVLTSLIQCYGKAQRTDDVV 466
               S I  Y  A   +  +
Sbjct: 364 AAYNSAIGSYINAAELEKAI 383



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 130/317 (41%), Gaps = 38/317 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA-RMNNLPNKAVEWFERM 226
           YN  +  +    +L+KA  L+  M  + VK D+VTF+ LIS + RM+  P +A+ + + M
Sbjct: 366 YNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYP-EAISYLKEM 424

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
                      YSS++ AY + G V  A                                
Sbjct: 425 EDLSIPLTKEVYSSVLCAYSKQGQVTEA-------------------------------- 452

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
               +++ +MK  G +P++I Y ++L     +++  +   ++ EM  NG+ P+    ++L
Sbjct: 453 ---ESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSAL 509

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +RA+ +     +   +   M+EK +  +  ++  + + C  +     A ++ + M     
Sbjct: 510 MRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLP 569

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
                 T + M+ +    GKV     +F +++ +G   NL     L++           +
Sbjct: 570 SLSIGLT-NQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYI 628

Query: 467 RALNRLPELGITPDDRF 483
             L  +   GI P ++ 
Sbjct: 629 EVLEWMSGAGIQPSNQM 645



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 2/242 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWF 223
           V+ YN  +  +     L +A  +F  M   G+KP+ V+  TL++ C+R     N      
Sbjct: 293 VVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTV-L 351

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
               S G + +   Y+S I +Y  A  +E A  LY   R +K + D   F+ LI      
Sbjct: 352 SAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRM 411

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
             +   ++  +EM+ + +      Y+++L    +  +  + ++I+ +M   G  P+   Y
Sbjct: 412 SKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAY 471

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S+L AY  +        ++ EM+  G++      + L+      G     F + + M+ 
Sbjct: 472 TSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMRE 531

Query: 404 SE 405
            E
Sbjct: 532 KE 533


>gi|326525088|dbj|BAK07814.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 539

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 159/349 (45%), Gaps = 16/349 (4%)

Query: 151 ALTYFTN---KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           ALT+F +    L A     LY   + +  K      A  L D+M +R +   +     +I
Sbjct: 122 ALTFFHHVVPSLPADSLPALYAAMIDLLAKHHHFPLARHLLDEMRERSIPVSSQVILAII 181

Query: 208 SCARMNNLPNKAVEWFERMPSFGCD-PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
                  +  +A E F RM  +G   PD    +S++ A  +      A  L+D  ++  +
Sbjct: 182 RRYVRAGMSPEASELFRRMEEYGAGVPDPAVLASLLGALSKKRLAGEAQALFDSYKS-VF 240

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             D   ++TL+  +  AG  D    V+ EM+  G+ PN+ TY +++D M RA +  + + 
Sbjct: 241 PPDVVLYTTLVHAWCRAGCLDKAEQVFAEMQQAGIMPNVYTYTSVIDAMYRAGQVPRAQE 300

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +  +M + G  PN  T+ +++RA+ +A   E  L V+ +M++ G    +  YN L+    
Sbjct: 301 LLCQMMETGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHC 360

Query: 387 DVGYT--DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
             G +  D A ++   M  ++ C PD  TF+ M+ +    G V  A  ++  M E   +P
Sbjct: 361 GKGQSNLDAAMKVLAKM-IAKGCIPDCHTFNPMLKLVLGTGNVEAARRLYERMQELQCKP 419

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCG 485
           N+     L++ + K +  D V+R    +   G+ P+        + FCG
Sbjct: 420 NVVTYNLLMKLFNKEKSMDMVLRIKKDMDAQGVEPNVNTYGALIESFCG 468



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 116/240 (48%), Gaps = 3/240 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  Y   +    +   + +A+ L   M++ G  P+  TF+ ++          + ++   
Sbjct: 279 VYTYTSVIDAMYRAGQVPRAQELLCQMMETGCPPNTATFNAIMRAHVKAGRSEQVLQVHN 338

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAG--NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           +M   GCDPD +TY+ +++ +   G  N++ A  +  +   +    D + F+ ++KL   
Sbjct: 339 QMRQLGCDPDIITYNFLMETHCGKGQSNLDAAMKVLAKMIAKGCIPDCHTFNPMLKLVLG 398

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            GN +    +YE M+ +  KPN++TYN L+    + K    V  I K+M   G+ PN NT
Sbjct: 399 TGNVEAARRLYERMQELQCKPNVVTYNLLMKLFNKEKSMDMVLRIKKDMDAQGVEPNVNT 458

Query: 343 YASLLRAY-GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           Y +L+ ++ GR  +     ++   ++EK ++ +  +Y+ +L +    G   +  E+ E M
Sbjct: 459 YGALIESFCGRGNWRRAHATLREMVEEKSLKPTKPVYDMVLMLLRKAGQLRKHEELVELM 518



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 134/282 (47%), Gaps = 4/282 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA-RMNNLPNKAVEW 222
           +V+LY   +  + +   LDKAE++F +M   G+ P+  T++++I    R   +P +A E 
Sbjct: 243 DVVLYTTLVHAWCRAGCLDKAEQVFAEMQQAGIMPNVYTYTSVIDAMYRAGQVP-RAQEL 301

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
             +M   GC P+  T+++++ A+ +AG  E    ++++ R      D   ++ L++ +  
Sbjct: 302 LCQMMETGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCG 361

Query: 283 AG--NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
            G  N D  + V  +M A G  P+  T+N +L  +         + +Y+ M +    PN 
Sbjct: 362 KGQSNLDAAMKVLAKMIAKGCIPDCHTFNPMLKLVLGTGNVEAARRLYERMQELQCKPNV 421

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY  L++ + + +  +  L + ++M  +G++ +V  Y  L+      G    A     +
Sbjct: 422 VTYNLLMKLFNKEKSMDMVLRIKKDMDAQGVEPNVNTYGALIESFCGRGNWRRAHATLRE 481

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
           M   ++ +P    +  ++ +    G++ + E +   M + GF
Sbjct: 482 MVEEKSLKPTKPVYDMVLMLLRKAGQLRKHEELVELMADRGF 523



 Score = 40.4 bits (93), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AA  L     +L+    V+ YN+ MK+F K + +D   R+  DM  +GV+P+  T+  LI
Sbjct: 404 AARRLYERMQELQCKPNVVTYNLLMKLFNKEKSMDMVLRIKKDMDAQGVEPNVNTYGALI 463

Query: 208 S--CARMN 213
              C R N
Sbjct: 464 ESFCGRGN 471


>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 696

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 161/367 (43%), Gaps = 39/367 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC---------ARM------ 212
           YN  +K + K   L  AE +  +M   GVKPD  T+S LI           AR+      
Sbjct: 330 YNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEME 389

Query: 213 --NNLPNKAV------------EW------FERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
             N  PN  V            EW       + M S G  PD   Y+ MID +G+   ++
Sbjct: 390 ASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLD 449

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A   ++R  +E  R D   ++TLI  +  +G  +    ++ EM+  G  P + TYN ++
Sbjct: 450 HAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMI 509

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           ++MG  +R  QV     +M   GL PN  TY +L+  YG++    D +     +K  G +
Sbjct: 510 NSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFK 569

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            + T+YN L+   A  G ++ A   F  M ++E   P     +S+I       + +EA A
Sbjct: 570 PTSTMYNALINAYAQRGLSELAVNAFRLM-TTEGLTPSLLALNSLINAFGEDRRDAEAFA 628

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL---LN 489
           +   M E   EP++   T+L++   + ++   V      +   G TPD +    L   L 
Sbjct: 629 VLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVTSGCTPDRKARAMLRSALR 688

Query: 490 VMTQTPK 496
            M QT K
Sbjct: 689 YMKQTLK 695



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 164/380 (43%), Gaps = 42/380 (11%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNL--------- 215
           + YN  +    +  D++KA  L   M   G +PD V +S++I    R N +         
Sbjct: 186 LTYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLY 245

Query: 216 ---------------------------PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
                                      P +A+ +     S G +P   T  ++I A G +
Sbjct: 246 TEIETDKIEIDGHLMNDIILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNS 305

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           G    A  L++  R         A++ L+K Y   G+      V  EM+  GVKP+  TY
Sbjct: 306 GRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTY 365

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           + L+D    A R    + + KEM  + + PN   Y+ +L +Y      + +  V ++MK 
Sbjct: 366 SLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKS 425

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKV 427
            G+Q     YN ++         D A   FE M  SE  +PD+ T++++I  C C+ G+ 
Sbjct: 426 NGVQPDRHFYNVMIDTFGKYNCLDHAMATFERML-SEGIRPDTVTWNTLIN-CHCKSGRH 483

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
           + AE +F EM + G+ P +     +I   G+ QR + V   L+++   G+ P+      L
Sbjct: 484 NMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTL 543

Query: 488 LNVMTQTPKEELGKLVECVE 507
           ++V  ++ +      +EC+E
Sbjct: 544 VDVYGKSGR--FSDAIECLE 561



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 134/279 (48%), Gaps = 1/279 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y+  +  +R   +  K+ ++  DM   GV+PD   ++ +I      N  + A+  FERM
Sbjct: 399 VYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERM 458

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            S G  PD +T++++I+ + ++G   MA  L+   +   +      ++ +I   G    +
Sbjct: 459 LSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRW 518

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           +       +M++ G+ PN ITY  L+D  G++ R        + +   G  P    Y +L
Sbjct: 519 EQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNAL 578

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + AY +    E  ++ +R M  +G+  S+   N+L+    +     EAF + + MK + N
Sbjct: 579 INAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKEN-N 637

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            +PD  T+++++       K  +  A++ EM+ +G  P+
Sbjct: 638 IEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVTSGCTPD 676



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 157/367 (42%), Gaps = 12/367 (3%)

Query: 128 DDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERL 187
           D  L  D ++  +   +P  A   L    +     K   L  V + +    R   +AE L
Sbjct: 256 DGHLMNDIILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRT-HEAEAL 314

Query: 188 FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
           F+++ + G +P    ++ L+           A      M   G  PD  TYS +IDAY  
Sbjct: 315 FEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAH 374

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
           AG  E A  +      E   ++PN++  S ++  Y   G +     V ++MK+ GV+P+ 
Sbjct: 375 AGRWESARIVLKEM--EASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDR 432

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRARYGEDTLSV 362
             YN ++DT G+          ++ M   G+ P+   WNT  +     GR    E+   +
Sbjct: 433 HFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEE---L 489

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
           + EM+++G    +T YN ++    +    ++   +F     S+   P+S T+++++ +  
Sbjct: 490 FGEMQQRGYSPCITTYNIMINSMGEQQRWEQV-SLFLSKMQSQGLLPNSITYTTLVDVYG 548

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
             G+ S+A      +   GF+P   +  +LI  Y +   ++  V A   +   G+TP   
Sbjct: 549 KSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLL 608

Query: 483 FCGCLLN 489
               L+N
Sbjct: 609 ALNSLIN 615



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 94/196 (47%), Gaps = 3/196 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +  YN+ +    + +  ++       M  +G+ P+++T++TL+     +   + A+E  E
Sbjct: 502 ITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLE 561

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            + S G  P +  Y+++I+AY + G  E+A   +     E       A ++LI  +G   
Sbjct: 562 VLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDR 621

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  V + MK   ++P+++TY  L+  + R ++  +V  +Y+EM  +G +P+    A
Sbjct: 622 RDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVTSGCTPDRKARA 681

Query: 345 SLLRAYGRARYGEDTL 360
            L  A    RY + TL
Sbjct: 682 MLRSAL---RYMKQTL 694


>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 173/382 (45%), Gaps = 39/382 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +++  K    D++  LF  ML++G   + + ++T+I       + +KAV  F +M 
Sbjct: 261 YTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKMV 320

Query: 228 SFGCDPDALTYSSMIDAYGRAGN-------VEMA--------FGLYDRARNE-------- 264
             GC P+  TYS +++     G        VEM+        +  + R  ++        
Sbjct: 321 ENGCQPNEFTYSVLLNVLVAEGQLNKLDNIVEMSKKYMNKQIYAYFVRTLSKLGHSSEAH 380

Query: 265 -----KWRI----DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
                 W +    D +A+ ++++   ++G     +++        +  + I YN +   +
Sbjct: 381 RLFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTAL 440

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           GR K+   +  +Y++M  +G  P+  TY  L+ +YGRA   +  + ++ E++    Q  V
Sbjct: 441 GRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDV 500

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YN+L+      G  DEA   F++M+  +   PD  T+S++I       KV  A ++F+
Sbjct: 501 ISYNSLINCLGKNGDVDEAHMRFKEMQE-KGLNPDVVTYSTLIECFGKTDKVEMACSLFD 559

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
           EM+  G  PNL     L+ C  ++ RT + V    +L + G+TPD         V+ +  
Sbjct: 560 EMIAEGCSPNLVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPD----SITYAVLERLQ 615

Query: 496 KEELGKLVECVEKSNSKLGYVV 517
               GKL   V + N   G+VV
Sbjct: 616 SGRHGKLR--VRRQNPITGWVV 635



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 168/407 (41%), Gaps = 73/407 (17%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   ++ + + RD DKA  ++ DML  G   D   F+ L+     +   +KA + FE M 
Sbjct: 191 YKCLLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMK 250

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C+PD  TY+ MI   G+AG  + +  L+     + + ++  A++T+I+        D
Sbjct: 251 RRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMAD 310

Query: 288 GCLNVYEEMKAIGVKPNMITYN------------NLLDTMGRAKRPWQVKTIY----KEM 331
             + ++ +M   G +PN  TY+            N LD +    + +  K IY    + +
Sbjct: 311 KAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLDNIVEMSKKYMNKQIYAYFVRTL 370

Query: 332 TDNGLSPN--------WNT----------------------------------------- 342
           +  G S          WN                                          
Sbjct: 371 SKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTDT 430

Query: 343 --YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
             Y ++  A GR +       +Y +MK+ G    +  YN L++     G  D A +IFE+
Sbjct: 431 IMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEE 490

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           +++S NCQPD  +++S+I      G V EA   F EM E G  P++   ++LI+C+GK  
Sbjct: 491 LENS-NCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTD 549

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
           + +      + +   G +P+      LL+ +     E  G+  E V+
Sbjct: 550 KVEMACSLFDEMIAEGCSPNLVTYNILLDCL-----ERSGRTAEAVD 591



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 106/204 (51%), Gaps = 3/204 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           + + I+YN       + + +     L++ M   G  PD  T++ LIS        + AV+
Sbjct: 427 TTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVK 486

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            FE + +  C PD ++Y+S+I+  G+ G+V+ A   +   + +    D   +STLI+ +G
Sbjct: 487 IFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFG 546

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                +   ++++EM A G  PN++TYN LLD + R+ R  +   +Y ++   GL+P+  
Sbjct: 547 KTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSI 606

Query: 342 TYASLLRAYGRARYGEDTLSVYRE 365
           TYA L R     R+G+  L V R+
Sbjct: 607 TYAVLERLQS-GRHGK--LRVRRQ 627



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 130/262 (49%), Gaps = 2/262 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y   ++   K     +A RLF +M +   K D   + +++     +    +A++   R 
Sbjct: 362 IYAYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDLLNRF 421

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
                  D + Y+++  A GR   V     LY++ + +    D   ++ LI  YG AG  
Sbjct: 422 HEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRV 481

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  + ++EE++    +P++I+YN+L++ +G+     +    +KEM + GL+P+  TY++L
Sbjct: 482 DSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTL 541

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  +G+    E   S++ EM  +G   ++  YN LL      G T EA +++  +K  + 
Sbjct: 542 IECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCLERSGRTAEAVDLYAKLK-QQG 600

Query: 407 CQPDSWTFSSMITICSCR-GKV 427
             PDS T++ +  + S R GK+
Sbjct: 601 LTPDSITYAVLERLQSGRHGKL 622



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 157/370 (42%), Gaps = 26/370 (7%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYN-VTMKVFRKCRDL--DKAERLFDDMLD 193
           +IL ++ NP T A    +F   LK   +  +YN + + + R    L  ++ E L DDM  
Sbjct: 96  LILKSLKNP-TLAFKFFHFCPSLK--NDPFIYNRLFLTLSRSSSQLRFEQTESLLDDMEK 152

Query: 194 RGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           RGVK    T + LI     ++       +W       G   +A +Y  ++  Y R  + +
Sbjct: 153 RGVKGSISTVNILIGFFGDLDRCVGLVKKW-------GLRFNAYSYKCLLQGYLRLRDCD 205

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            AFG+Y       + +D  AF+ L+         D    V+E+MK    +P+  TY  ++
Sbjct: 206 KAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMI 265

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
              G+A +  +   +++ M + G + N   Y +++ A  + R  +  + ++ +M E G Q
Sbjct: 266 RMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKMVENGCQ 325

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +   Y+ LL +    G  ++   I E  K   N Q     ++  +   S  G  SEA  
Sbjct: 326 PNEFTYSVLLNVLVAEGQLNKLDNIVEMSKKYMNKQ----IYAYFVRTLSKLGHSSEAHR 381

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           +F  M     + +     S+++    + +  + +  LNR  E  IT D         +M 
Sbjct: 382 LFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTD--------TIMY 433

Query: 493 QTPKEELGKL 502
            T    LG+L
Sbjct: 434 NTVFTALGRL 443


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 156/328 (47%), Gaps = 7/328 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +    K   +++A  + + M+D+GV PD +T+S L+      +  ++A+E   
Sbjct: 258 VVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLH 317

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M S GC P+ +T++S+ID   ++     AF +  +  N     D   F+ LI     AG
Sbjct: 318 GMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAG 377

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           NF+    ++EEM A  ++P+++T+  L+D + +A +    + I   M + G+ PN  TY 
Sbjct: 378 NFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYN 437

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L+    ++   E+      EM   G       Y +L+        TD+A ++   +KS 
Sbjct: 438 VLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSF 497

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               PD+ T++ ++      GK  +A  +  EM+  G +P+ F   +   C+G   R+ +
Sbjct: 498 -GWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAA---CFGGLHRSGN 553

Query: 465 VVRALNRLPEL---GITPDDRFCGCLLN 489
           +   +  L  +   G+ PD   C  +L+
Sbjct: 554 LAGTMELLRVVLAKGMLPDATTCSSILD 581



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 135/289 (46%), Gaps = 11/289 (3%)

Query: 196 VKPDNVTFSTLI----SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
           V PD VTFSTLI     C + +   N      + M + G  P+ +TY+++++   +A  +
Sbjct: 221 VSPDTVTFSTLIDGLCKCGQTDEACN------DDMIAGGYVPNVVTYNALVNGLCKADKM 274

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           E A  + +   ++    D   +S L+  +  A   D  L +   M + G  PN++T+N++
Sbjct: 275 ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSI 334

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +D + ++ R  +   I  ++ +  L P+  T+  L+    +A   E   +++ EM  K M
Sbjct: 335 IDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNM 394

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
           Q  V  +  L+      G  + A +I  D+  +    P+  T++ ++      G++ E  
Sbjct: 395 QPDVMTFGALIDGLCKAGQVEAARDIL-DLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPC 453

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               EM+ +G  P      SL+    +A RTDD ++ +++L   G  PD
Sbjct: 454 EFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPD 502



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 161/393 (40%), Gaps = 74/393 (18%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLISCARMNNLPNKA 219
           +S+ V  YN+ ++   +  +  +A  +F   + R GV P  VT++T+I+    +N     
Sbjct: 41  SSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAG 100

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           +E FE +   G  PD +TY+++ID+  +AG++E A  L+    +     +   +S LI  
Sbjct: 101 MELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLING 160

Query: 280 YGTAGNFDGCLNVYEEM--KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD---- 333
               G  D    + +EM  K+  V PN+ITYN+ LD + +     +   + + + D    
Sbjct: 161 LCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLR 220

Query: 334 -------------------------------NGLSPNWNTYASLLRAYGRARYGEDTLSV 362
                                           G  PN  TY +L+    +A   E   ++
Sbjct: 221 VSPDTVTFSTLIDGLCKCGQTDEACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAM 280

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TIC 421
              M +KG+   V  Y+ L+         DEA E+   M +S  C P+  TF+S+I  +C
Sbjct: 281 IESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGM-ASRGCTPNVVTFNSIIDGLC 339

Query: 422 ---------------------------------SCR-GKVSEAEAMFNEMLEAGFEPNLF 447
                                            +C+ G   +A A+F EM+    +P++ 
Sbjct: 340 KSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVM 399

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              +LI    KA + +     L+ +  LG+ P+
Sbjct: 400 TFGALIDGLCKAGQVEAARDILDLMGNLGVPPN 432



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 128/305 (41%), Gaps = 36/305 (11%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L +       +  V+ +N  +    K     +A ++   + +R + PD VTF+ LI+
Sbjct: 312 ALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIA 371

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
            A       +A   FE M +    PD +T+ ++ID   +AG VE A  + D   N     
Sbjct: 372 GACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGN----- 426

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
                                         +GV PN++TYN L+  + ++ R  +     
Sbjct: 427 ------------------------------LGVPPNVVTYNVLVHGLCKSGRIEEPCEFL 456

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           +EM  +G  P   TY SL+ A  RA   +D L +  ++K  G       YN L+      
Sbjct: 457 EEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKS 516

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G T++A  + E+M    + QPDS+TF++        G ++    +   +L  G  P+   
Sbjct: 517 GKTEQAITVLEEMVGKGH-QPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDATT 575

Query: 449 LTSLI 453
            +S++
Sbjct: 576 CSSIL 580



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 78/166 (46%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AA  +      L     V+ YNV +    K   +++     ++M+  G  P+++T+ +L+
Sbjct: 416 AARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLV 475

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                 +  + A++   ++ SFG DPD +TY+ ++D   ++G  E A  + +    +  +
Sbjct: 476 YALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQ 535

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
            D   F+        +GN  G + +   + A G+ P+  T +++LD
Sbjct: 536 PDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILD 581


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 158/352 (44%), Gaps = 36/352 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y   +  F K  DLDKA   + +MLDRG+ P+ VT+S++I+        +KA+E  
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  P+  TY+S++  Y  +G  + A G   +  ++    D   +++L+      
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       +++ M   G+KP + TY  LL          ++  +   M  NG+ PN   +
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+ AY +    +  + V+ +M+++G+      Y T++ +    G  ++A   FE M  
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM-I 436

Query: 404 SENCQPDSWTFSSMI----------------------TIC------------SCR-GKVS 428
            E   P +  ++S+I                       IC             C+ G+V 
Sbjct: 437 DERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVI 496

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           E+E +F+ M+  G +P++   ++LI  Y  A + D+  + L  +  +G+ PD
Sbjct: 497 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 140/283 (49%), Gaps = 1/283 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + Y   + +  K   ++ A R F+ M+D  + P N+ +++LI    + +  +KA E  
Sbjct: 408 DTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELI 467

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G   D + ++S+ID++ + G V  +  L+D       + D   +STLI  Y  A
Sbjct: 468 LEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 527

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D    +   M ++G+KP+ +TYN L++   +  R      +++EM  +G+SP+  TY
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             +L+   + R       +Y  + E G QL ++ YN +L        TDEA  +F+++  
Sbjct: 588 NIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 647

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           ++  Q ++ TF+ MI      G+  EA+ +F  +   G  P++
Sbjct: 648 TD-LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 147/322 (45%), Gaps = 38/322 (11%)

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG--CDPDAL 236
           R  D  + +   M   G  P+  +++ L+      N   +A+E  + MP  G  C PD +
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVV 200

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           +Y+++I+ + + G+++ A+G                                    Y EM
Sbjct: 201 SYTTVINGFFKEGDLDKAYG-----------------------------------TYHEM 225

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
              G+ PN++TY++++  + +A+   +   +   M  NG+ PN  TY S++  Y  +   
Sbjct: 226 LDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP 285

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           ++ +   ++M   G++  V  YN+L+      G   EA ++F+ M +    +P+  T+ +
Sbjct: 286 KEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM-TKRGLKPEITTYGT 344

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           ++   + +G + E   + + M+  G  PN +V + LI  Y K  + D  +   +++ + G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 477 ITPDDRFCGCLLNVMTQTPKEE 498
           + PD    G ++ ++ ++ + E
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVE 426



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 191/462 (41%), Gaps = 62/462 (13%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           E+  Y   ++ +     L +   L D M+  G+ P++  FS LI         ++A+  F
Sbjct: 338 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVF 397

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE------------------- 264
            +M   G +PD +TY ++I    ++G VE A   +++  +E                   
Sbjct: 398 SKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIF 457

Query: 265 -KWR---------------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
            KW                +D   F+++I  +   G       +++ M  IGVKP++ITY
Sbjct: 458 DKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITY 517

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           + L+D    A +  +   +   M   G+ P+  TY +L+  Y +    ED L ++REM+ 
Sbjct: 518 STLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMES 577

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G+   +  YN +L        T  A E++  +  S   Q +  T+ ++I    C+  ++
Sbjct: 578 SGVSPDIITYNIILQGLFQTRRTAAAKELYVGITES-GTQLELSTY-NIILHGLCKNNLT 635

Query: 429 -EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
            EA  MF  +     +        +I    K  R D+       L   G+ PD R    +
Sbjct: 636 DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695

Query: 488 L-NVMTQTPKEELGKLVECVEK----SNSK-LGYVVKLLLEEQDI-----------EGDF 530
             N++ Q   EEL  L   +E+    +NS+ L  +V+ LL+  DI           E  F
Sbjct: 696 AENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHF 755

Query: 531 KKEATE---LFNSISKDVKKAYCNC----LIDLCVNLNLLEN 565
             EA+      + +S    + Y +C    +  LCVN  + EN
Sbjct: 756 SLEASTASLFLDLLSGGKYQEYHSCIRGGIFSLCVNSEVQEN 797



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 7/217 (3%)

Query: 293 YEEMKAIG---VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           Y  M   G   V PN+ TY  L+ +   A R          +   G   +   +  LL+ 
Sbjct: 76  YNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 135

Query: 350 YGRARYGEDTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENC 407
               +   D +  V R M + G   +V  YN LL    D   + EA E+ + M     +C
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDC 195

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD  +++++I      G + +A   ++EML+ G  PN+   +S+I    KAQ  D  + 
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 468 ALNRLPELGITPDDRFCGCLLN--VMTQTPKEELGKL 502
            L  + + G+ P+ R    +++    +  PKE +G L
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 158/352 (44%), Gaps = 36/352 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y   +  F K  DLDKA   + +MLDRG+ P+ VT++++I+        +KA+E  
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVL 257

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  P+  TY+S++  Y  +G  + A G   +  ++    D   +++L+      
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       +++ M   G+KP + TY  LL          ++  +   M  NG+ PN   +
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+ AY +    +  + V+ +M+++G+      Y T++ +    G  ++A   FE M  
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM-I 436

Query: 404 SENCQPDSWTFSSMI----------------------TIC------------SCR-GKVS 428
            E   P +  ++S+I                       IC             C+ G+V 
Sbjct: 437 DERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVI 496

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           E+E +F+ M+  G +PN+   ++LI  Y  A + D+  + L  +  +G+ PD
Sbjct: 497 ESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 147/322 (45%), Gaps = 38/322 (11%)

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG--CDPDAL 236
           R  D  + +   M   G  P+  +++ L+      N   +A+E  + MP  G  C PD +
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVV 200

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           +Y+++I+ + + G+++ A+G                                    Y EM
Sbjct: 201 SYTTVINGFFKEGDLDKAYG-----------------------------------TYHEM 225

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
              G+ PN++TYN+++  + +A+   +   +   M  NG+ PN  TY S++  Y  +   
Sbjct: 226 LDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP 285

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           ++ +   ++M   G++  V  YN+L+      G   EA ++F+ M +    +P+  T+ +
Sbjct: 286 KEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM-TKRGLKPEITTYGT 344

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           ++   + +G + E   + + M+  G  PN +V + LI  Y K  + D  +   +++ + G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 477 ITPDDRFCGCLLNVMTQTPKEE 498
           + PD    G ++ ++ ++ + E
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVE 426



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 155/320 (48%), Gaps = 6/320 (1%)

Query: 151 ALTYFTNKL--KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ YF   +  + S   I+YN  +         DKA+ L  +MLDRG+  D + F+++I 
Sbjct: 428 AMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIID 487

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    ++ + F+ M   G  P+ +TYS++ID Y  AG ++ A  L     +   + 
Sbjct: 488 SHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKP 547

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   ++TLI  Y      +  L ++ EM++ GV P++ITYN +L  + + +R    K +Y
Sbjct: 548 DCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 607

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             +T++G     +TY  +L    +    ++ L +++ +    +QL    +N ++     V
Sbjct: 608 VGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKV 667

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G  DEA ++F  + S+    PD  T+S M      +G + E + +F  M E G   N  +
Sbjct: 668 GRNDEAKDLFAAL-SANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRM 726

Query: 449 LTSLIQCYGKAQRTDDVVRA 468
           L S+++   K  +  D+ RA
Sbjct: 727 LNSIVR---KLLQRGDITRA 743



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 138/315 (43%), Gaps = 10/315 (3%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFS-TLISCARMNNLPNKAVEWFERMPSFGCD---PDALT 237
           + A  +FD++L RG        +  L   AR +  P  AV  + RM   G D   P+  T
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHS--PAAAVSRYNRMARAGADEVTPNLCT 93

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEM 296
           Y  +I +   AG +++ F        + +R+D  AF+ L+K L       D    V   M
Sbjct: 94  YGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 153

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLRAYGRAR 354
             +G  PN+ +YN LL  +    R  +   + + M D+G    P+  +Y +++  + +  
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG 213

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             +     Y EM ++G+  +V  YN+++A        D+A E+   M  +    P+  T+
Sbjct: 214 DLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKN-GVMPNCRTY 272

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +S++      G+  EA     +M   G EP++    SL+    K  R  +  +  + + +
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332

Query: 475 LGITPDDRFCGCLLN 489
            G+ P+    G LL 
Sbjct: 333 RGLKPEITTYGTLLQ 347



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 175/417 (41%), Gaps = 48/417 (11%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           E+  Y   ++ +     L +   L D M+  G+ P++  FS LI         ++A+  F
Sbjct: 338 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVF 397

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE------------------- 264
            +M   G +PD +TY ++I    ++G VE A   +++  +E                   
Sbjct: 398 SKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIF 457

Query: 265 -KWR---------------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
            KW                +D   F+++I  +   G       +++ M  IGVKPN+ITY
Sbjct: 458 DKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITY 517

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           + L+D    A +  +   +   M   G+ P+  TY +L+  Y +    ED L ++REM+ 
Sbjct: 518 STLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMES 577

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G+   +  YN +L        T  A E++  +  S   Q +  T+ ++I    C+  ++
Sbjct: 578 SGVSPDIITYNIILQGLFQTRRTAAAKELYVGITES-GTQLELSTY-NIILHGLCKNNLT 635

Query: 429 -EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
            EA  MF  +     +        +I    K  R D+       L   G+ PD R    +
Sbjct: 636 DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695

Query: 488 L-NVMTQTPKEELGKLVECVEK----SNSK-LGYVVKLLLEEQDIEGDFKKEATELF 538
             N++ Q   EEL  L   +E+    +NS+ L  +V+ LL+     GD  +  T LF
Sbjct: 696 AENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQ----RGDITRAGTYLF 748



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 7/217 (3%)

Query: 293 YEEMKAIG---VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           Y  M   G   V PN+ TY  L+ +   A R          +   G   +   +  LL+ 
Sbjct: 76  YNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 135

Query: 350 YGRARYGEDTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENC 407
               +   D +  V R M + G   +V  YN LL    D   + EA E+ + M     +C
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDC 195

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD  +++++I      G + +A   ++EML+ G  PN+    S+I    KAQ  D  + 
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAME 255

Query: 468 ALNRLPELGITPDDRFCGCLLN--VMTQTPKEELGKL 502
            L  + + G+ P+ R    +++    +  PKE +G L
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 176/401 (43%), Gaps = 51/401 (12%)

Query: 118 DVFS---VLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKV 174
           +VFS   +L+ L DD   Q+ + +L  M  PD                 +V+ Y   +  
Sbjct: 161 NVFSYNILLKGLCDDNRSQEALELLQMM--PDDGG----------DCPPDVVSYTTVING 208

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F K  DLDKA   + +MLDRG+ P+ VT+S++I+        +KA+E    M   G  P+
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
             TY+S++  Y  +G  + A G   +  ++    D   +++L+      G       +++
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
            M   G+KP + TY  LL          ++  +   M  NG+ PN   ++ L+ AY +  
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQG 388

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             +  + V+ +M+++G+      Y T++ +    G  ++A   FE M   E   P +  +
Sbjct: 389 KVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM-IDERLSPGNIVY 447

Query: 415 SSMI----------------------TIC------------SCR-GKVSEAEAMFNEMLE 439
           +S+I                       IC             C+ G+V E+E +F+ M+ 
Sbjct: 448 NSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVR 507

Query: 440 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            G +P++   ++LI  Y  A + D+  + L  +  +G+ PD
Sbjct: 508 IGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 140/283 (49%), Gaps = 1/283 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + Y   + +  K   ++ A R F+ M+D  + P N+ +++LI    + +  +KA E  
Sbjct: 408 DTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELI 467

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G   D + ++S+ID++ + G V  +  L+D       + D   +STLI  Y  A
Sbjct: 468 LEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 527

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D    +   M ++G+KP+ +TYN L++   +  R      +++EM  +G+SP+  TY
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             +L+   + R       +Y  + E G QL ++ YN +L        TDEA  +F+++  
Sbjct: 588 NIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 647

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           ++  Q ++ TF+ MI      G+  EA+ +F  +   G  P++
Sbjct: 648 TD-LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 175/417 (41%), Gaps = 48/417 (11%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           E+  Y   ++ +     L +   L D M+  G+ P++  FS LI         ++A+  F
Sbjct: 338 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVF 397

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE------------------- 264
            +M   G +PD +TY ++I    ++G VE A   +++  +E                   
Sbjct: 398 SKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIF 457

Query: 265 -KWR---------------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
            KW                +D   F+++I  +   G       +++ M  IGVKP++ITY
Sbjct: 458 DKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITY 517

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           + L+D    A +  +   +   M   G+ P+  TY +L+  Y +    ED L ++REM+ 
Sbjct: 518 STLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMES 577

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G+   +  YN +L        T  A E++  +  S   Q +  T+ ++I    C+  ++
Sbjct: 578 SGVSPDIITYNIILQGLFQTRRTAAAKELYVGITES-GTQLELSTY-NIILHGLCKNNLT 635

Query: 429 -EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
            EA  MF  +     +        +I    K  R D+       L   G+ PD R    +
Sbjct: 636 DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695

Query: 488 L-NVMTQTPKEELGKLVECVEK----SNSK-LGYVVKLLLEEQDIEGDFKKEATELF 538
             N++ Q   EEL  L   +E+    +NS+ L  +V+ LL+     GD  +  T LF
Sbjct: 696 AENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQ----RGDITRAGTYLF 748



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 151/394 (38%), Gaps = 80/394 (20%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFS-TLISCARMNNLPNKAVEWFERMPSFGCD---PDALT 237
           + A  +FD++L RG        +  L   AR +  P  AV  + RM   G D   P+  T
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHS--PAAAVSRYNRMARAGADEVTPNLCT 93

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEM 296
           Y  ++ +   AG +++ F        + + +D  AF+ ++K L       D    V   M
Sbjct: 94  YGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRM 153

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTI----------------------------- 327
             +G  PN+ +YN LL  +    R  +   +                             
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG 213

Query: 328 --------YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
                   Y EM D G+ PN  TY+S++ A  +A+  +  + V   M + G+  +   YN
Sbjct: 214 DLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYN 273

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE--- 436
           +++      G   EA    + M  S+  +PD  T++S++      G+ +EA  MF+    
Sbjct: 274 SIVHGYCSSGQPKEAIGFLKKMH-SDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332

Query: 437 --------------------------------MLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
                                           M+  G  PN +V + LI  Y K  + D 
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQ 392

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
            +   +++ + G+ PD    G ++ ++ ++ + E
Sbjct: 393 AMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVE 426



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 7/217 (3%)

Query: 293 YEEMKAIG---VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           Y  M   G   V PN+ TY  L+ +   A R          +   G   +   +  +L+ 
Sbjct: 76  YNRMARAGADEVTPNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKG 135

Query: 350 YGRARYGEDTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENC 407
               +   D +  V R M + G   +V  YN LL    D   + EA E+ + M     +C
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDC 195

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD  +++++I      G + +A   ++EML+ G  PN+   +S+I    KAQ  D  + 
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 468 ALNRLPELGITPDDRFCGCLLN--VMTQTPKEELGKL 502
            L  + + G+ P+ R    +++    +  PKE +G L
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 180/372 (48%), Gaps = 32/372 (8%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+++ +       +A + FT   +A  + +++ YN  +    K   LD+   +F+ M D 
Sbjct: 61  IMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDA 120

Query: 195 GVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
              PD +T++ LI+C  +   +P KA E+   M + G  P+ +TYS+ IDA+ + G ++ 
Sbjct: 121 DCDPDVITYNALINCFCKFERMP-KAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQE 179

Query: 254 AFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           A   +   R  +  + PN F  ++LI     AGN    L + EE+   G+K N++TY  L
Sbjct: 180 AIKFFVDMR--RVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTAL 237

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           LD +    R  + + +++ M + G++PN  TY +L+  + +A+  E    + +EMKEK +
Sbjct: 238 LDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCI 297

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE-- 429
           +  + LY T+L    +    +EA  +  ++K S     ++  +++++      G+ +E  
Sbjct: 298 KPDLLLYGTILWGLCNESRLEEAKLLIGEIKES-GINTNAVIYTTLMDAYFKSGQATEAL 356

Query: 430 ---------------------AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
                                A+ +F+EML+ G  P+    T+LI    K     + +  
Sbjct: 357 TLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNL 416

Query: 469 LNRLPELGITPD 480
            +R+ E+G+  D
Sbjct: 417 RDRMIEIGMELD 428



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 140/283 (49%), Gaps = 1/283 (0%)

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           ++F+ M + G      TY+ MID   + G++EMA  L+ + +   +  D   +++LI  +
Sbjct: 42  KFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGH 101

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           G  G  D C+ ++E+MK     P++ITYN L++   + +R  +      EM  NGL PN 
Sbjct: 102 GKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNV 161

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY++ + A+ +    ++ +  + +M+   +  +   Y +L+      G   EA ++ E+
Sbjct: 162 VTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEE 221

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           +  +   + +  T+++++      G++ EAE +F  ML AG  PN    T+L+  + KA+
Sbjct: 222 ILQA-GIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAK 280

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 503
             +     L  + E  I PD    G +L  +    + E  KL+
Sbjct: 281 EMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLL 323



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 109/232 (46%), Gaps = 12/232 (5%)

Query: 265 KWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
           K+R+   P + + L+      G  D     +++M A G+K ++ TYN ++D + +     
Sbjct: 14  KFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLE 73

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
             ++++ +M + G +P+  TY SL+  +G+    ++ + ++ +MK+      V  YN L+
Sbjct: 74  MARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALI 133

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
                     +AFE   +MK++   +P+  T+S+ I      G + EA   F +M     
Sbjct: 134 NCFCKFERMPKAFEFLHEMKAN-GLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVAL 192

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
            PN F  TSLI    KA    + ++ +  + + GI          LNV+T T
Sbjct: 193 TPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIK---------LNVVTYT 235



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/227 (20%), Positives = 101/227 (44%), Gaps = 23/227 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +  F K ++++ A+ +  +M ++ +KPD + + T++      +   +A      + 
Sbjct: 269 YTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIK 328

Query: 228 SFGCDPDALTYSSMIDAYGRAGNV-----------------------EMAFGLYDRARNE 264
             G + +A+ Y++++DAY ++G                         E+A  L+D   ++
Sbjct: 329 ESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDK 388

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
               D  A++ LI      GN    LN+ + M  IG++ ++  Y  L+  +  + +  + 
Sbjct: 389 GMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKA 448

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           + +  EM   G+ P+   Y  L++ Y      ++ L +  EM ++GM
Sbjct: 449 RNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGM 495



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 18/182 (9%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++Y   M  + K     +A  L ++MLD            L+     NN    A + F+ 
Sbjct: 337 VIYTTLMDAYFKSGQATEALTLLEEMLD------------LVDGLCKNNCFEVAKKLFDE 384

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  PD + Y+++ID   + GN++ A  L DR       +D +A++ LI     +G 
Sbjct: 385 MLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQ 444

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
                N+ +EM   GV P+ + Y  L+     +G+     +++    EM   G+    + 
Sbjct: 445 VQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQN---EMAKRGMITGLSD 501

Query: 343 YA 344
           +A
Sbjct: 502 HA 503


>gi|356506793|ref|XP_003522160.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Glycine max]
          Length = 461

 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 174/357 (48%), Gaps = 7/357 (1%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           +L    +V+ YN  +  + +   LD A  +   M D G+ PD V+F+TLIS A   +L +
Sbjct: 41  RLGVLPDVVTYNTLIDAYCRFATLDVAYSVLARMHDAGIPPDVVSFNTLISGAVRKSLFS 100

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA--RNEKWRIDPNAFST 275
           K+++ F+ M   G +PDA +++ +++   + G  + A  ++     R+E   + P  ++ 
Sbjct: 101 KSLDLFDEMLKRGINPDAWSHNILMNCLFQLGKPDEANRVFKEIVLRDE---VHPATYNI 157

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           +I      G     L+++  ++  G  P ++TYN L++ + +A+R    + + KE  + G
Sbjct: 158 MINGLCKNGYVGNALSLFRNLQRHGFVPQVLTYNALINGLCKARRLKDARRVLKEFGETG 217

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
             PN  TY +++    R R  E+ L +  EM+  G       Y T++A     G   EA 
Sbjct: 218 NEPNAVTYTTVMTCCFRCRLFEEGLEILSEMRSLGFTFDGFAYCTVIAAMIKTGRMQEAE 277

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           EI E M SS   +PD  +++++I +   +G++ +A  + +E+   G E + +  T ++  
Sbjct: 278 EIVEMMVSS-GVRPDLVSYNTLINLYCRQGRLDDALRLLDEIEGEGLECDQYTHTIIVDG 336

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 511
             KA   D   R LN +  LG   +     C L+ + +    +   +L E +E  +S
Sbjct: 337 LCKAGNFDGAQRHLNYMNSLGFGSNLVAFNCFLDGLGKAGHIDHALRLFEVMEVKDS 393



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 142/317 (44%), Gaps = 43/317 (13%)

Query: 200 NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD 259
           N+T S+L    ++ N     V+        G  PD +TY+++IDAY R   +++A+ +  
Sbjct: 17  NITVSSLCKAKQIPNAETAIVDGIR----LGVLPDVVTYNTLIDAYCRFATLDVAYSVLA 72

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
           R  +     D  +F+TLI        F   L++++EM   G+ P+  ++N L++ + +  
Sbjct: 73  RMHDAGIPPDVVSFNTLISGAVRKSLFSKSLDLFDEMLKRGINPDAWSHNILMNCLFQLG 132

Query: 320 RPWQVKTIYKEMT-DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
           +P +   ++KE+   + + P   TY  ++    +  Y  + LS++R ++  G    V  Y
Sbjct: 133 KPDEANRVFKEIVLRDEVHPA--TYNIMINGLCKNGYVGNALSLFRNLQRHGFVPQVLTY 190

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC-SCR------------- 424
           N L+          +A  + ++   + N +P++ T+++++T C  CR             
Sbjct: 191 NALINGLCKARRLKDARRVLKEFGETGN-EPNAVTYTTVMTCCFRCRLFEEGLEILSEMR 249

Query: 425 ---------------------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                                G++ EAE +   M+ +G  P+L    +LI  Y +  R D
Sbjct: 250 SLGFTFDGFAYCTVIAAMIKTGRMQEAEEIVEMMVSSGVRPDLVSYNTLINLYCRQGRLD 309

Query: 464 DVVRALNRLPELGITPD 480
           D +R L+ +   G+  D
Sbjct: 310 DALRLLDEIEGEGLECD 326



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 106/235 (45%), Gaps = 2/235 (0%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I++N +        AL+ F N  +     +V+ YN  +    K R L  A R+  +  + 
Sbjct: 157 IMINGLCKNGYVGNALSLFRNLQRHGFVPQVLTYNALINGLCKARRLKDARRVLKEFGET 216

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G +P+ VT++T+++C     L  + +E    M S G   D   Y ++I A  + G ++ A
Sbjct: 217 GNEPNAVTYTTVMTCCFRCRLFEEGLEILSEMRSLGFTFDGFAYCTVIAAMIKTGRMQEA 276

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             + +   +   R D  +++TLI LY   G  D  L + +E++  G++ +  T+  ++D 
Sbjct: 277 EEIVEMMVSSGVRPDLVSYNTLINLYCRQGRLDDALRLLDEIEGEGLECDQYTHTIIVDG 336

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
           + +A      +     M   G   N   +   L   G+A + +  L ++  M+ K
Sbjct: 337 LCKAGNFDGAQRHLNYMNSLGFGSNLVAFNCFLDGLGKAGHIDHALRLFEVMEVK 391



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 96/232 (41%), Gaps = 4/232 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   M    +CR  ++   +  +M   G   D   + T+I+         +A E  E 
Sbjct: 223 VTYTTVMTCCFRCRLFEEGLEILSEMRSLGFTFDGFAYCTVIAAMIKTGRMQEAEEIVEM 282

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S G  PD ++Y+++I+ Y R G ++ A  L D    E    D    + ++     AGN
Sbjct: 283 MVSSGVRPDLVSYNTLINLYCRQGRLDDALRLLDEIEGEGLECDQYTHTIIVDGLCKAGN 342

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           FDG       M ++G   N++ +N  LD +G+A        +++ M       +  TY  
Sbjct: 343 FDGAQRHLNYMNSLGFGSNLVAFNCFLDGLGKAGHIDHALRLFEVME----VKDSFTYTI 398

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           ++    RAR       V     + G Q+       ++     +GY +EA ++
Sbjct: 399 VVHNLCRARRFLCASKVLVSCLKCGYQVLRATQRAVIVGLRSIGYANEARKV 450


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 147/317 (46%), Gaps = 2/317 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  YN+ + +  K + L++A  LF +    GV  D  T+S L+          KA+E F
Sbjct: 300 DVFTYNLLIALC-KSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVF 358

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   GC PD + Y+ +I   G+ G V+ A  L +    +    D   ++ +I +  + 
Sbjct: 359 YNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSC 418

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G ++   + +  MK     P+++TYN LL+ + + +R  +   ++ EM  N   P+  T+
Sbjct: 419 GRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTF 478

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+    +A   ED L     + + G   +  +YN L++     G  D+ +E+F+DM  
Sbjct: 479 GTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIE 538

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
             +C PDS T++ ++   S RG  S A  +  EM+  G  P L     LI+    A + +
Sbjct: 539 C-SCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVE 597

Query: 464 DVVRALNRLPELGITPD 480
           D       +   G  PD
Sbjct: 598 DAYTLFKEMIAKGFNPD 614



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 167/374 (44%), Gaps = 17/374 (4%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           +F +ML  G+K D    +TLI C     +  +A      M +  C  DA TY  +++A+ 
Sbjct: 183 VFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHC 242

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           RAG +       + AR++   +    ++ +I+ +   G       ++E        P++ 
Sbjct: 243 RAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVF 302

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TY NLL  + ++K+  +  T+++E    G+  +  TY+ L+ A+G+A      L V+  M
Sbjct: 303 TY-NLLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNM 361

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           ++ G      +YN L++     G  DEA E+ EDM + +   PD  T++ +I + S  G+
Sbjct: 362 QKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDM-NRKGIMPDCRTYNIVIDVLSSCGR 420

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
             +A + F  M      P++    +L+    K +RTD+     + +      PD    G 
Sbjct: 421 YEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGT 480

Query: 487 LLNVMTQTPK-----EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 541
           L++ + +  +     E+  +LV+     NS   Y+   L+      G   K   ELF  +
Sbjct: 481 LIDTLAKAGRMEDALEQSARLVKMGHAPNS---YIYNALISGFCRSGQVDK-GYELFQDM 536

Query: 542 SKDVKKAYCNCLID 555
            +      C+C  D
Sbjct: 537 IE------CSCFPD 544



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 128/276 (46%), Gaps = 11/276 (3%)

Query: 148 AALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD----NV 201
           AA AL  F N  KA    + ++YNV +    K   +D+A  L +DM  +G+ PD    N+
Sbjct: 351 AAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNI 410

Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
               L SC R      KA  +F  M      PD +TY+++++   +    + A  L+D  
Sbjct: 411 VIDVLSSCGRYE----KAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEM 466

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
           +  K   D   F TLI     AG  +  L     +  +G  PN   YN L+    R+ + 
Sbjct: 467 QANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQV 526

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
            +   ++++M +    P+  TY  L+  + R  +    + + +EM  +G   ++  YN L
Sbjct: 527 DKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVL 586

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           +   +  G  ++A+ +F++M  ++   PD  T+S++
Sbjct: 587 IRSLSMAGQVEDAYTLFKEM-IAKGFNPDMQTYSAL 621



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 154/367 (41%), Gaps = 44/367 (11%)

Query: 172 MKVFRKCRDLDKAERLFDDMLDRG--VKPDNVTFSTLISCARMNNLPNKAVEWFERM-PS 228
           ++ F +  DLD A  + DDM  RG   +PD V F+  +          +A+  F+ M  +
Sbjct: 60  IQAFGRAGDLDAAMGMLDDM-RRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRET 118

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
             C PD + Y+++I  Y +AG+ + A  ++ R + E     PNA  F TL+         
Sbjct: 119 CDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQE-GSCKPNAVSFDTLVIFLCKMSRA 177

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              L V++EM   G+K ++   N L+    R     Q + +   MT +  + +  TY  L
Sbjct: 178 TDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGIL 237

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLS-------------------------------- 374
           + A+ RA    +  S     +  G  LS                                
Sbjct: 238 VNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKES 297

Query: 375 ---VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
              V  YN L+A+C      +EA  +F++ +       D +T+S ++      G+ ++A 
Sbjct: 298 VPDVFTYNLLIALCKS-KQLEEALTLFQEAEQG-GVVLDVFTYSYLMDAFGKAGRAAKAL 355

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            +F  M +AG  P+  V   LI C GK  + D+ +  L  +   GI PD R    +++V+
Sbjct: 356 EVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVL 415

Query: 492 TQTPKEE 498
           +   + E
Sbjct: 416 SSCGRYE 422



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 140/350 (40%), Gaps = 77/350 (22%)

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARN-------------------EKWRI-------- 268
           +T +  I A+GRAG+++ A G+ D  R                    E  R+        
Sbjct: 54  VTCTECIQAFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFD 113

Query: 269 ----------DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGR 317
                     D  A++TLI  Y  AG+ D  L+++  +K  G  KPN ++++ L+  + +
Sbjct: 114 DMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCK 173

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWN-----------------------------------T 342
             R      +++EM   GL  + N                                   T
Sbjct: 174 MSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFT 233

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y  L+ A+ RA    +  S     +  G  LS   YN ++      G   EA ++FE   
Sbjct: 234 YGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTM 293

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           + E+  PD +T++ +I +C  + ++ EA  +F E  + G   ++F  + L+  +GKA R 
Sbjct: 294 TKESV-PDVFTYNLLIALCKSK-QLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRA 351

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSK 512
              +     + + G  PD      L++ + +  K +  + +E +E  N K
Sbjct: 352 AKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVD--EALELLEDMNRK 399



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 150/372 (40%), Gaps = 46/372 (12%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A+  ++ +   G   DA T ++M+    + G  E+   L    R +   +     +  I+
Sbjct: 2   ALATYKHLLKAGLPVDAHTATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQ 61

Query: 279 LYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GL 336
            +G AG+ D  + + ++M+     +P+ + +   +  +   +R  Q  T++ +M +    
Sbjct: 62  AFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDC 121

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
           +P+                                   V  YNTL+A     G  D A +
Sbjct: 122 APD-----------------------------------VVAYNTLIAGYCKAGDGDRALD 146

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           +F  +K   +C+P++ +F +++       + ++A A+F EML AG + ++ V  +LI C 
Sbjct: 147 MFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCT 206

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY 515
            +        R L+ +       D    G L+N   +  +  E+   +E        L  
Sbjct: 207 CRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSA 266

Query: 516 VVKLLLEEQDIEGDFKKEATELFNS--ISKDVKKAYC-NCLIDLCVNLNLLENACKLLEL 572
           V    + +  I      EAT+LF S    + V   +  N LI LC +   LE A  L + 
Sbjct: 267 VNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLIALCKS-KQLEEALTLFQE 325

Query: 573 ----GLTLEVYT 580
               G+ L+V+T
Sbjct: 326 AEQGGVVLDVFT 337


>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 608

 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 193/424 (45%), Gaps = 28/424 (6%)

Query: 102 LVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVI---------------ILNNMTNPD 146
           +V+  A +DSC  +E D F ++    D  ++  C +               ++N +    
Sbjct: 14  MVEAKAVMDSC-LSEKDQFQLISPSVDSRVQSRCPVCLGKNSCRTVHSRTKLMNILIGKG 72

Query: 147 TAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFS 204
               A   F N ++      +I Y   +    K +  +    L   + + G+KPD++ ++
Sbjct: 73  KPHEANLIFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILYN 132

Query: 205 TLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
            +I+    +    +A++ F++M   GC P   T++++I  YG AG  E    +     + 
Sbjct: 133 AMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKML-HLMSL 191

Query: 265 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
              + PN   ++ L++ + +  N +   NV  +M A G++P+++TYN L     +     
Sbjct: 192 DGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETL 251

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           + + +  EM    ++PN  T   ++  Y +     + L     MKE G+  ++ ++N+L+
Sbjct: 252 RAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLI 311

Query: 383 AMCADVGYT---DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
               D+  T   DEA  + E+       +PD  TFS+++   S  G + + + +FN+M +
Sbjct: 312 KGFLDITDTDGVDEALTLMEEY----GVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAK 367

Query: 440 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 499
           AG EP++   + L + Y +A  T++    L  + + G+ P+   C  +++      K E 
Sbjct: 368 AGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKMEN 427

Query: 500 GKLV 503
            K+V
Sbjct: 428 AKMV 431



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 149/351 (42%), Gaps = 37/351 (10%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI----------SCARMNNL 215
           ILYN  +  F +  ++ +A ++F  M D G KP   TF+TLI             +M +L
Sbjct: 129 ILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHL 188

Query: 216 --------PN--------------KAVE--W--FERMPSFGCDPDALTYSSMIDAYGRAG 249
                   PN              K +E  W    +M + G  PD +TY+ +  AY + G
Sbjct: 189 MSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKG 248

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
               A  L    + EK   +      ++  Y   GN    L     MK +GV PN++ +N
Sbjct: 249 ETLRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFN 308

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
           +L+           V      M + G+ P+  T+++++ A+  A   +    ++ +M + 
Sbjct: 309 SLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKA 368

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G++  +  ++ L       G T+ A  +   M  S   +P+    +++I+     GK+  
Sbjct: 369 GIEPDIHAFSILAKGYVRAGETENAESVLTSMAKS-GVRPNVVICTTIISGWCSAGKMEN 427

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           A+ ++ +M E G  PNL    +LI  Y +A++       L  + E G+ P+
Sbjct: 428 AKMVYEKMCEIGISPNLKTFETLIWGYAEARQPGKAEELLQLMEEKGVFPE 478



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 2/221 (0%)

Query: 132 EQDCVIILNNMTNPDTA--ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFD 189
           E+ C II+N          AL   Y   +L     ++++N  +K F    D D  +    
Sbjct: 269 ERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEALT 328

Query: 190 DMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
            M + GVKPD +TFST+++      L +K  E F  M   G +PD   +S +   Y RAG
Sbjct: 329 LMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAG 388

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
             E A  +         R +    +T+I  + +AG  +    VYE+M  IG+ PN+ T+ 
Sbjct: 389 ETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEKMCEIGISPNLKTFE 448

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            L+     A++P + + + + M + G+ P  +T   +  A+
Sbjct: 449 TLIWGYAEARQPGKAEELLQLMEEKGVFPEKSTIQLVADAW 489



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 10/236 (4%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           ++ +A R    M + GV P+ V F++LI         +   E    M  +G  PD +T+S
Sbjct: 284 NMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFS 343

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           ++++A+  AG ++    +++         D +AFS L K Y  AG  +   +V   M   
Sbjct: 344 TIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKS 403

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           GV+PN++    ++     A +    K +Y++M + G+SPN  T+ +L+  Y  AR     
Sbjct: 404 GVRPNVVICTTIISGWCSAGKMENAKMVYEKMCEIGISPNLKTFETLIWGYAEARQPGKA 463

Query: 360 LSVYREMKEKG-------MQLSVTLYNTLLAMCADVGYT---DEAFEIFEDMKSSE 405
             + + M+EKG       +QL    +  +  +C     T   +E  E++ D K  E
Sbjct: 464 EELLQLMEEKGVFPEKSTIQLVADAWRNIGLLCEAKRITKIEEEDEELYADCKRGE 519


>gi|125564557|gb|EAZ09937.1| hypothetical protein OsI_32236 [Oryza sativa Indica Group]
          Length = 544

 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 154/330 (46%), Gaps = 13/330 (3%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           LY   + +  K      A  L D+M +R V         LI       +P++A + F RM
Sbjct: 147 LYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFRRM 206

Query: 227 PSFGCD-PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
             +G   PD  T +S++ A  +      A  ++D  ++  +  D   ++TL+  +  +G 
Sbjct: 207 EEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKS-VFTPDVVLYTTLVHAWCRSGR 265

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D    V+ EM+  GV PN+ TY  ++D M RA +  + + +  +M D+G  PN  T+ +
Sbjct: 266 LDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNA 325

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT--DEAFEIFEDMKS 403
           ++RA+ +A   E  L V+ +M++ G +  +  YN L+      G +  D A ++   M  
Sbjct: 326 IMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRM-I 384

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           ++ C PD  TF+ M+ +    G V+ A  ++  M E   +PN+     L++ +   +  D
Sbjct: 385 AKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMD 444

Query: 464 DVVRALNRLPELGITPD--------DRFCG 485
            V+R    +   G+ P+        + FCG
Sbjct: 445 MVLRIKRDMDAQGVEPNVNTYAALIEAFCG 474



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 129/278 (46%), Gaps = 38/278 (13%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-------SCARMNN 214
           + +V+LY   +  + +   LD+AER+F +M   GV P+  T++ +I          R   
Sbjct: 247 TPDVVLYTTLVHAWCRSGRLDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQE 306

Query: 215 L----------PNKA------------------VEWFERMPSFGCDPDALTYSSMIDAYG 246
           L          PN A                  ++   +M   GC+PD +TY+ +++ + 
Sbjct: 307 LLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHC 366

Query: 247 RAG--NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
             G  N++ A  +  R   +    D + F+ ++KL    GN +    +YE M+ +  KPN
Sbjct: 367 GKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPN 426

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGEDTLSVY 363
           ++TYN L+      K    V  I ++M   G+ PN NTYA+L+ A+ GR  +    +++ 
Sbjct: 427 VVTYNLLMRLFNLEKSMDMVLRIKRDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTLR 486

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
             ++EK ++ +  +Y+ +LA+    G      E+ E M
Sbjct: 487 EMVEEKALKPTKPVYDMVLALLRKAGQLRRHEELVEMM 524



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 112/267 (41%), Gaps = 38/267 (14%)

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
           LP     +   +PS   D     Y++MID   +  +  +A  L D  R     I      
Sbjct: 125 LPEAVAFFHHVLPSLPPDSLPALYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLIL 184

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            LI+ Y                                    RA+ P +   +++ M + 
Sbjct: 185 ALIRRY-----------------------------------VRAEMPSEASDLFRRMEEY 209

Query: 335 GL-SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
           G  +P+  T ASLL A  + R   +  +++   K       V LY TL+      G  DE
Sbjct: 210 GAGAPDPATLASLLGALSKKRLASEAQAMFDSYKSV-FTPDVVLYTTLVHAWCRSGRLDE 268

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A  +F +M+ +    P+ +T++++I      G+V  A+ +  +M+++G  PN     +++
Sbjct: 269 AERVFAEMQQA-GVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIM 327

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPD 480
           + + KA R++ V++  N++ +LG  PD
Sbjct: 328 RAHVKAGRSEQVLQVHNQMRQLGCEPD 354


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 170/366 (46%), Gaps = 7/366 (1%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           ++N+    + K   +D+A  +FD M  + + P+ VT+  LI         + AV  F +M
Sbjct: 344 IFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQM 403

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G  PD   +SS++         E A  L+    ++  R+D   F+TL+      G  
Sbjct: 404 IDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRV 463

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                + + M  +GV+P++I+YN L+D      R  +   +   +   GL P+  TY +L
Sbjct: 464 MEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTL 523

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L  Y +AR  +D  S++REM  KG+   V  YNT+L      G   EA E++  M +S  
Sbjct: 524 LHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRT 583

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            Q + +T++ +I        V EA  MF+ +     + ++F    +I    K  R +D +
Sbjct: 584 -QMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAM 642

Query: 467 RALNRLPELGITPD-DRFCGCLLNVMTQTPKEELGKLVECVEKS----NSK-LGYVVKLL 520
                +   G+ PD + +C    N++ +   EEL +L   +E++    NS+ L  +V+ L
Sbjct: 643 DLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWL 702

Query: 521 LEEQDI 526
           L   DI
Sbjct: 703 LHRGDI 708



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/419 (20%), Positives = 187/419 (44%), Gaps = 38/419 (9%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y   +    K + +D+A+ +F  M+D+GV+P+N T++ LI          + V+  +
Sbjct: 202 VVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQ 261

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M + G  PD   Y+ ++D   + G    A  ++D    +  + +   +  L+  Y T G
Sbjct: 262 EMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEG 321

Query: 285 NF-----------------------------------DGCLNVYEEMKAIGVKPNMITYN 309
           +                                    D  ++++++M+   + PN++TY 
Sbjct: 322 SLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYG 381

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            L+D + +  R       + +M D G++P+   ++SL+         E    ++ E+ ++
Sbjct: 382 ALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQ 441

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G++L    +NTL+      G   EA  +  D+      +PD  ++++++      G++ E
Sbjct: 442 GIRLDTVFFNTLMCNLCREGRVMEAQRLI-DLMLRVGVRPDVISYNTLVDGHCLTGRIDE 500

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           A  + + ++  G +P+     +L+  Y KA+R DD       +   G+TPD      +L+
Sbjct: 501 AAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILH 560

Query: 490 VMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVK 546
            + QT +  E  +L   +  S +++      ++     + +F  EA ++F+S+ SKD++
Sbjct: 561 GLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQ 619



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 140/298 (46%), Gaps = 7/298 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKA-ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
           + ++++  +K     + +D+A + L   M + G  PD  ++S L+          +A+E 
Sbjct: 127 DTVIFSQLLKGLCDAKRVDEATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALEL 186

Query: 223 FERMPSFG---CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              M   G     P+ +TY+++ID   +A  V+ A G++    ++  R + + ++ LI  
Sbjct: 187 LSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHG 246

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           Y + G +   + + +EM   G++P+   Y  LLD + +  R  + + I+  +   G+ PN
Sbjct: 247 YLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPN 306

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
              Y  LL  Y       +  S    M   G+     ++N +    A     DEA  IF+
Sbjct: 307 VTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFD 366

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            M+  +   P+  T+ ++I      G+V +A   FN+M++ G  P++FV +SL+  YG
Sbjct: 367 KMR-QQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLV--YG 421



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 147/323 (45%), Gaps = 18/323 (5%)

Query: 181 LDKAERLFDDMLDRGVKPDNV----TFSTLISCARMNNLPNKAVEWFERMP---SFGCDP 233
           L+ A +LFD+ML    +P +V       T +S AR ++     V  F RM    S    P
Sbjct: 32  LNDALKLFDEMLTHA-RPASVRAFNQLLTAVSRARCSSASELVVSLFNRMIRECSIKVAP 90

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNV 292
            + TY+ +I  + R G ++  F  +       WR+ D   FS L+K    A   D   ++
Sbjct: 91  SSFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDI 150

Query: 293 -YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG---LSPNWNTYASLLR 348
               M   G  P++ +Y+ LL      KR  +   +   M D+G    +PN  TY +++ 
Sbjct: 151 LLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVID 210

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
              +A+  +    V++ M +KG++ +   Y  L+     +G   E  ++ ++M S+   Q
Sbjct: 211 GLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEM-STHGLQ 269

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD + ++ ++      G+ +EA  +F+ ++  G +PN+ +   L+  Y       ++   
Sbjct: 270 PDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSF 329

Query: 469 LNRLPELGITPDDRFCGCLLNVM 491
           L+ +   G++PD      + N+M
Sbjct: 330 LDLMVGNGVSPDHH----IFNIM 348



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 90/183 (49%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  +  + K R +D A  LF +ML +G+ PD VT++T++         ++A E +  
Sbjct: 518 VTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLS 577

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M +     +  TY+ +I+   +   V+ AF ++    ++  ++D    + +I      G 
Sbjct: 578 MINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGR 637

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  ++++  + A G+ P++ TY  + + + +     ++  ++  M +NG +PN     +
Sbjct: 638 KEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNA 697

Query: 346 LLR 348
           L+R
Sbjct: 698 LVR 700


>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
          Length = 500

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 147/296 (49%), Gaps = 1/296 (0%)

Query: 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
           ++VI YN+ +  F +     +AE  +  +L+    P+  T++ LI    ++ L  KA   
Sbjct: 160 QDVICYNLLIDAFGQKFLYKEAESTYLQLLEARCIPNEDTYALLIKAYCLSGLLEKAEAV 219

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F  M ++G    A+ Y+S I+   + GN   A  ++ R + +  +     ++ LI LYG 
Sbjct: 220 FVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGK 279

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G     L V+ EM +   KPN+ TY  L++   R     + + ++++M + GL P+  +
Sbjct: 280 DGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYS 339

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +L+ AY RA +      ++  M+  G +     YN L+      G+ ++A  +FEDMK
Sbjct: 340 YNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFEDMK 399

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
                 P   +   +++  S  G VS+ E + N+M ++G + + FVL S++  YG+
Sbjct: 400 RV-GITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLNLYGR 454



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 146/298 (48%), Gaps = 1/298 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +K +     L+KAE +F +M + G+    V +++ I+       PNKA E F RM 
Sbjct: 200 YALLIKAYCLSGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMK 259

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P   TY+ +I+ YG+ G   MA  +++   + K + +   ++ L+  +   G  +
Sbjct: 260 RDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCE 319

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V+E+M+  G++P++ +YN L++   RA  P+    I+  M   G  P+  +Y  L+
Sbjct: 320 KAEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILV 379

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            AYGRA +  D  +V+ +MK  G+  ++  +  LL+  +  G   +  +I   M  S   
Sbjct: 380 DAYGRAGFLNDAEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKS-GL 438

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           + D++  +SM+ +    G+  + E +   M     E ++     LI  YG+A   D +
Sbjct: 439 KLDTFVLNSMLNLYGRLGQFGKMEEVLTVMENGSCEADISTYNILINRYGQAGFIDKM 496



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 147/319 (46%), Gaps = 9/319 (2%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           +L    K D + ++ LI       L  +A   + ++    C P+  TY+ +I AY  +G 
Sbjct: 153 LLRSSFKQDVICYNLLIDAFGQKFLYKEAESTYLQLLEARCIPNEDTYALLIKAYCLSGL 212

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
           +E A  ++   +N         +++ I      GN +    ++  MK  G KP+  TY  
Sbjct: 213 LEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTM 272

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L++  G+  + +    ++ EM  +   PN  TY +L+ A+ R    E    V+ +M+E G
Sbjct: 273 LINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAG 332

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
           ++  V  YN L+   +  G+   A EIF  M+    C+PD  +++ ++      G +++A
Sbjct: 333 LEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHM-GCEPDRASYNILVDAYGRAGFLNDA 391

Query: 431 EAMFNEMLEAGFEPNL---FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
           EA+F +M   G  P +    VL S     G   + +D+   LN++ + G+  D      +
Sbjct: 392 EAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDI---LNQMCKSGLKLDTFVLNSM 448

Query: 488 LNVMTQTPKEELGKLVECV 506
           LN+  +    + GK+ E +
Sbjct: 449 LNLYGRLG--QFGKMEEVL 465



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 134/269 (49%), Gaps = 1/269 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++YN  +    K  + +KAE +F  M   G KP   T++ LI+    +     A++ F  
Sbjct: 233 VVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNE 292

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S  C P+  TY+++++A+ R G  E A  ++++ +      D  +++ L++ Y  AG 
Sbjct: 293 MLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYSYNALMEAYSRAGF 352

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
             G   ++  M+ +G +P+  +YN L+D  GRA      + ++++M   G++P   ++  
Sbjct: 353 PYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFEDMKRVGITPTMKSHMV 412

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           LL A+ +         +  +M + G++L   + N++L +   +G   +  E+   M++  
Sbjct: 413 LLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLNLYGRLGQFGKMEEVLTVMENG- 471

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           +C+ D  T++ +I      G + + E +F
Sbjct: 472 SCEADISTYNILINRYGQAGFIDKMEGLF 500



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 128/273 (46%), Gaps = 3/273 (1%)

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
           W     SF    D + Y+ +IDA+G+    + A   Y +    +   + + ++ LIK Y 
Sbjct: 151 WILLRSSF--KQDVICYNLLIDAFGQKFLYKEAESTYLQLLEARCIPNEDTYALLIKAYC 208

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            +G  +    V+ EMK  G+  + + YN+ ++ + +   P + + I+  M  +G  P+  
Sbjct: 209 LSGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTE 268

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY  L+  YG+       L V+ EM     + ++  Y  L+   A  G  ++A E+FE M
Sbjct: 269 TYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQM 328

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           + +   +PD +++++++   S  G    A  +F+ M   G EP+      L+  YG+A  
Sbjct: 329 QEA-GLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGF 387

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
            +D       +  +GITP  +    LL+  ++T
Sbjct: 388 LNDAEAVFEDMKRVGITPTMKSHMVLLSAFSKT 420


>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 831

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 154/318 (48%), Gaps = 3/318 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I Y   +    + +       L   +   G++PD + F+ +I+ +  +   ++A++ FE
Sbjct: 354 IITYTTLVTALTRQKHFHSLLSLISKVQKNGLRPDTILFNAIINASSESGNLDQAMKIFE 413

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA-RNEKWRIDPNAFSTLIKLYGTA 283
           +M   GC P A T++++I  YG+ G +E +  L +   R+E  + +    + L++ +   
Sbjct: 414 KMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPNDRTCNILVQAWCNQ 473

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TIYKEMTDNGLSPNWNT 342
              +   N+  +M++ GVKP+ +T+N L     R       +  I   M  N + PN  T
Sbjct: 474 RKIEEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIGSTCTAEDMIIPRMLHNKVKPNVRT 533

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
             +++  Y      E+ L  +  MKE G+  ++ ++N+L+    ++   D   E+  D+ 
Sbjct: 534 CGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVV-DLM 592

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
                +PD  TFS+++   S  G +   E ++ +MLE G +P++   + L + Y +A   
Sbjct: 593 EEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDMLEGGIDPDIHAFSILAKGYARAGEP 652

Query: 463 DDVVRALNRLPELGITPD 480
           +   + LN++ + G+ P+
Sbjct: 653 EKAEQILNQMRKFGVRPN 670



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 134/313 (42%), Gaps = 20/313 (6%)

Query: 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
           C D+    +L + +++RG                    P +A   F  +   G  P  +T
Sbjct: 316 CGDVRSRTKLMNGLIERG-------------------RPQEAHSIFNTLIEEGHKPSIIT 356

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           Y++++ A  R  +      L  + +    R D   F+ +I     +GN D  + ++E+MK
Sbjct: 357 YTTLVTALTRQKHFHSLLSLISKVQKNGLRPDTILFNAIINASSESGNLDQAMKIFEKMK 416

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYG 356
             G KP   T+N L+   G+  +  +   + + M  D  L PN  T   L++A+   R  
Sbjct: 417 ESGCKPTASTFNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPNDRTCNILVQAWCNQRKI 476

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           E+  ++  +M+  G++     +NTL    + +G T  A ++          +P+  T  +
Sbjct: 477 EEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIGSTCTAEDMIIPRMLHNKVKPNVRTCGT 536

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           ++      GK+ EA   F  M E G  PNLFV  SLI+ +      D V   ++ + E G
Sbjct: 537 IVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFG 596

Query: 477 ITPDDRFCGCLLN 489
           + PD      L+N
Sbjct: 597 VKPDVVTFSTLMN 609



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 127/253 (50%), Gaps = 5/253 (1%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMP 227
           N+ ++ +   R +++A  +   M   GVKPD VTF+TL    +R+ +          RM 
Sbjct: 464 NILVQAWCNQRKIEEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIGSTCTAEDMIIPRML 523

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGN 285
                P+  T  ++++ Y   G +E A   + R +  +  + PN   F++LIK +    +
Sbjct: 524 HNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMK--ELGVHPNLFVFNSLIKGFLNIND 581

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            DG   V + M+  GVKP+++T++ L++         + + IY++M + G+ P+ + ++ 
Sbjct: 582 MDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDMLEGGIDPDIHAFSI 641

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L + Y RA   E    +  +M++ G++ +V +Y  +++     G   +A +++  M+ S 
Sbjct: 642 LAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYNKMRGSV 701

Query: 406 NCQPDSWTFSSMI 418
              P+  T+ ++I
Sbjct: 702 GLSPNLTTYETLI 714



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 143/297 (48%), Gaps = 4/297 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDML-DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +N  +K + K   L+++ RL + ML D  ++P++ T + L+          +A     +M
Sbjct: 427 FNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKM 486

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY-DRARNEKWRIDPNAFSTLIKLYGTAGN 285
            SFG  PDA+T++++  AY R G+   A  +   R  + K + +     T++  Y   G 
Sbjct: 487 QSFGVKPDAVTFNTLARAYSRIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGK 546

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  L  +  MK +GV PN+  +N+L+           V  +   M + G+ P+  T+++
Sbjct: 547 MEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFST 606

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ A+      +    +YR+M E G+   +  ++ L    A  G  ++A +I   M+   
Sbjct: 607 LMNAWSSVGDMKRCEEIYRDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKF- 665

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQR 461
             +P+   ++ +I+     G++ +A  ++N+M    G  PNL    +LI  +G+A++
Sbjct: 666 GVRPNVVIYTQIISGWCSAGEMKKAMQVYNKMRGSVGLSPNLTTYETLIWGFGEAKQ 722



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 11/232 (4%)

Query: 99  YNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLE--QDCVIILNNMTNPDTAALALTYF- 155
           +N+L +  + + S    ED +  + R L +      + C  I+N          AL +F 
Sbjct: 498 FNTLARAYSRIGSTCTAEDMI--IPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFY 555

Query: 156 -TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
              +L     + ++N  +K F    D+D    + D M + GVKPD VTFSTL++      
Sbjct: 556 RMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVG 615

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA-- 272
              +  E +  M   G DPD   +S +   Y RAG  E A  + ++ R  K+ + PN   
Sbjct: 616 DMKRCEEIYRDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMR--KFGVRPNVVI 673

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMK-AIGVKPNMITYNNLLDTMGRAKRPWQ 323
           ++ +I  + +AG     + VY +M+ ++G+ PN+ TY  L+   G AK+PW+
Sbjct: 674 YTQIISGWCSAGEMKKAMQVYNKMRGSVGLSPNLTTYETLIWGFGEAKQPWK 725



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 99/202 (49%), Gaps = 5/202 (2%)

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G KP++ITY  L+  + R K    + ++  ++  NGL P+   + +++ A   +   +  
Sbjct: 349 GHKPSIITYTTLVTALTRQKHFHSLLSLISKVQKNGLRPDTILFNAIINASSESGNLDQA 408

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           + ++ +MKE G + + + +NTL+     +G  +E+  + E M   E  QP+  T + ++ 
Sbjct: 409 MKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPNDRTCNILVQ 468

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT---DDVVRALNRLPELG 476
               + K+ EA  +  +M   G +P+     +L + Y +   T   +D++  + R+    
Sbjct: 469 AWCNQRKIEEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIGSTCTAEDMI--IPRMLHNK 526

Query: 477 ITPDDRFCGCLLNVMTQTPKEE 498
           + P+ R CG ++N   +  K E
Sbjct: 527 VKPNVRTCGTIVNGYCEEGKME 548


>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
 gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
          Length = 390

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 164/342 (47%), Gaps = 5/342 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +++  K     K     ++M+ +G   + + ++T+I     N + +KA+    +M 
Sbjct: 13  YTILIRMSGKAGKATKFVSFLEEMVSKGCVLNLIAYNTVIEALGKNKMVDKAIFMLSKMI 72

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C P+  TYS M+D     G +     + D        ++ + +S L+K    +G+  
Sbjct: 73  ESDCQPNQFTYSIMLDVLATGGQLHRLNEILDICSG---HLNRSVYSYLVKALCKSGHAS 129

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              +V+  M +   K +   + ++L+ +  A++  +   +   M + G++ +   Y  + 
Sbjct: 130 EAHSVFCRMWSSHEKGDRDAFVSMLEALCNAEKTAEAIDLLHMMPEKGITTDVGMYNIIF 189

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A G+ +      S+Y +MK  G+   V  YN +++    VG  D+A E+FE+M  S +C
Sbjct: 190 SALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGRVGLVDKASELFEEMDDS-SC 248

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD  T++SMI      G + EA  +F +M E G++P++F  + LI+C+GK+ + D    
Sbjct: 249 KPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACS 308

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 508
             + +   G  P+      LL+ + +  K  E  KL E +++
Sbjct: 309 LFDEMIAQGCVPNIVTYNILLDCLERHGKTREAHKLYETLKQ 350



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 109/206 (52%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L +   +   + +V +YN+      K + +     L+D M   GV PD  T++ +IS
Sbjct: 166 AIDLLHMMPEKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMIS 225

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 L +KA E FE M    C PD +TY+SMI+  G+ G+++ A  L+   + + +  
Sbjct: 226 SFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDP 285

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +S LI+ +G +   D   ++++EM A G  PN++TYN LLD + R  +  +   +Y
Sbjct: 286 DVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCLERHGKTREAHKLY 345

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRAR 354
           + +   GL+P+  TY+ L R   R++
Sbjct: 346 ETLKQQGLAPDSITYSILERLESRSQ 371



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 150/323 (46%), Gaps = 18/323 (5%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-------ARMNNLPN 217
           +I YN  ++   K + +DKA  +   M++   +P+  T+S ++          R+N + +
Sbjct: 45  LIAYNTVIEALGKNKMVDKAIFMLSKMIESDCQPNQFTYSIMLDVLATGGQLHRLNEILD 104

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
                  R            YS ++ A  ++G+   A  ++ R  +   + D +AF +++
Sbjct: 105 ICSGHLNRS----------VYSYLVKALCKSGHASEAHSVFCRMWSSHEKGDRDAFVSML 154

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           +    A      +++   M   G+  ++  YN +   +G+ K+   + ++Y +M  NG++
Sbjct: 155 EALCNAEKTAEAIDLLHMMPEKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVA 214

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P+  TY  ++ ++GR    +    ++ EM +   +  V  YN+++      G  DEA  +
Sbjct: 215 PDVFTYNIMISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHML 274

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           F+DM+  +   PD +T+S +I       KV  A ++F+EM+  G  PN+     L+ C  
Sbjct: 275 FKDMQ-EKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCLE 333

Query: 458 KAQRTDDVVRALNRLPELGITPD 480
           +  +T +  +    L + G+ PD
Sbjct: 334 RHGKTREAHKLYETLKQQGLAPD 356



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 136/313 (43%), Gaps = 19/313 (6%)

Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFT--------NKLKASKEVI------ 166
           +V+  LG + +    + +L+ M   D      TY           +L    E++      
Sbjct: 50  TVIEALGKNKMVDKAIFMLSKMIESDCQPNQFTYSIMLDVLATGGQLHRLNEILDICSGH 109

Query: 167 ----LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
               +Y+  +K   K     +A  +F  M     K D   F +++          +A++ 
Sbjct: 110 LNRSVYSYLVKALCKSGHASEAHSVFCRMWSSHEKGDRDAFVSMLEALCNAEKTAEAIDL 169

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
              MP  G   D   Y+ +  A G+   V     LYD+ +      D   ++ +I  +G 
Sbjct: 170 LHMMPEKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGR 229

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G  D    ++EEM     KP++ITYN++++ +G+     +   ++K+M + G  P+  T
Sbjct: 230 VGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFT 289

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y+ L+  +G++   +   S++ EM  +G   ++  YN LL      G T EA +++E +K
Sbjct: 290 YSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCLERHGKTREAHKLYETLK 349

Query: 403 SSENCQPDSWTFS 415
             +   PDS T+S
Sbjct: 350 -QQGLAPDSITYS 361



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 3/172 (1%)

Query: 157 NKLKA---SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
           +K+KA   + +V  YN+ +  F +   +DKA  LF++M D   KPD +T++++I+C   N
Sbjct: 206 DKMKANGVAPDVFTYNIMISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKN 265

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
              ++A   F+ M   G DPD  TYS +I+ +G++  V+MA  L+D    +    +   +
Sbjct: 266 GDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTY 325

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           + L+      G       +YE +K  G+ P+ ITY+ L     R++R  +++
Sbjct: 326 NILLDCLERHGKTREAHKLYETLKQQGLAPDSITYSILERLESRSQRTARIR 377



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 100/203 (49%), Gaps = 8/203 (3%)

Query: 183 KAERLFDDMLDRGVKPD----NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           +A  L   M ++G+  D    N+ FS L    +++ + +     +++M + G  PD  TY
Sbjct: 165 EAIDLLHMMPEKGITTDVGMYNIIFSALGKLKQVSFMSS----LYDKMKANGVAPDVFTY 220

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           + MI ++GR G V+ A  L++   +   + D   ++++I   G  G+ D    ++++M+ 
Sbjct: 221 NIMISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQE 280

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
            G  P++ TY+ L++  G++ +     +++ EM   G  PN  TY  LL    R     +
Sbjct: 281 KGYDPDVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCLERHGKTRE 340

Query: 359 TLSVYREMKEKGMQLSVTLYNTL 381
              +Y  +K++G+      Y+ L
Sbjct: 341 AHKLYETLKQQGLAPDSITYSIL 363



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 98/217 (45%), Gaps = 12/217 (5%)

Query: 269 DPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           DP+A++   LI++ G AG     ++  EEM + G   N+I YN +++ +G+ K   +   
Sbjct: 7   DPDAYTYTILIRMSGKAGKATKFVSFLEEMVSKGCVLNLIAYNTVIEALGKNKMVDKAIF 66

Query: 327 IYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
           +  +M ++   PN  TY+ +L      G+     + L +          L+ ++Y+ L+ 
Sbjct: 67  MLSKMIESDCQPNQFTYSIMLDVLATGGQLHRLNEILDICSG------HLNRSVYSYLVK 120

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
                G+  EA  +F  M SS   + D   F SM+       K +EA  + + M E G  
Sbjct: 121 ALCKSGHASEAHSVFCRMWSSHE-KGDRDAFVSMLEALCNAEKTAEAIDLLHMMPEKGIT 179

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            ++ +   +    GK ++   +    +++   G+ PD
Sbjct: 180 TDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPD 216



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 7/181 (3%)

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           NC PD++T++ +I +    GK ++  +   EM+  G   NL    ++I+  GK +  D  
Sbjct: 5   NCDPDAYTYTILIRMSGKAGKATKFVSFLEEMVSKGCVLNLIAYNTVIEALGKNKMVDKA 64

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQD 525
           +  L+++ E    P+      +L+V+      +L +L E ++  +  L   V   L +  
Sbjct: 65  IFMLSKMIESDCQPNQFTYSIMLDVLATGG--QLHRLNEILDICSGHLNRSVYSYLVKAL 122

Query: 526 IEGDFKKEATELF----NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 581
            +     EA  +F    +S  K  + A+ + L  LC N      A  LL +     + TD
Sbjct: 123 CKSGHASEAHSVFCRMWSSHEKGDRDAFVSMLEALC-NAEKTAEAIDLLHMMPEKGITTD 181

Query: 582 I 582
           +
Sbjct: 182 V 182


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 158/352 (44%), Gaps = 36/352 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y   +  F K  DLDKA   + +MLDRG+ P+ VT+S++I+        +KA+E  
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  P+  TY+S++  Y  +G  + A G   +  ++    D   +++L+      
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       +++ M   G+KP + TY  LL          ++  +   M  NG+ PN   +
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+ AY +    +  + V+ +M+++G+      Y T++ +    G  ++A   FE M  
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM-I 436

Query: 404 SENCQPDSWTFSSMI----------------------TIC------------SCR-GKVS 428
            E   P +  ++S+I                       IC             C+ G+V 
Sbjct: 437 DERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVI 496

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           E+E +F+ M+  G +P++   ++LI  Y  A + D+  + L  +  +G+ PD
Sbjct: 497 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 140/283 (49%), Gaps = 1/283 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + Y   + +  K   ++ A R F+ M+D  + P N+ +++LI    + +  +KA E  
Sbjct: 408 DTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELI 467

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G   D + ++S+ID++ + G V  +  L+D       + D   +STLI  Y  A
Sbjct: 468 LEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 527

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D    +   M ++G+KP+ +TYN L++   +  R      +++EM  +G+SP+  TY
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             +L+   + R       +Y  + E G QL ++ YN +L        TDEA  +F+++  
Sbjct: 588 NIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 647

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           ++  Q ++ TF+ MI      G+  EA+ +F  +   G  P++
Sbjct: 648 TD-LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 147/322 (45%), Gaps = 38/322 (11%)

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG--CDPDAL 236
           R  D  + +   M   G  P+  +++ L+      N   +A+E  + MP  G  C PD +
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVV 200

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           +Y+++I+ + + G+++ A+G                                    Y EM
Sbjct: 201 SYTTVINGFFKEGDLDKAYG-----------------------------------TYHEM 225

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
              G+ PN++TY++++  + +A+   +   +   M  NG+ PN  TY S++  Y  +   
Sbjct: 226 LDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP 285

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           ++ +   ++M   G++  V  YN+L+      G   EA ++F+ M +    +P+  T+ +
Sbjct: 286 KEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM-TKRGLKPEITTYGT 344

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           ++   + +G + E   + + M+  G  PN +V + LI  Y K  + D  +   +++ + G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 477 ITPDDRFCGCLLNVMTQTPKEE 498
           + PD    G ++ ++ ++ + E
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVE 426



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 141/309 (45%), Gaps = 1/309 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           E+  Y   ++ +     L +   L D M+  G+ P++  FS LI         ++A+  F
Sbjct: 338 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVF 397

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M   G +PD +TY ++I    ++G VE A   +++  +E+       +++LI      
Sbjct: 398 SKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIF 457

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
             +D    +  EM   G+  + I +N+++D+  +  R  + + ++  M   G+ P+  TY
Sbjct: 458 DKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITY 517

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           ++L+  Y  A   ++   +   M   GM+     YNTL+     +   ++A  +F +M+S
Sbjct: 518 STLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMES 577

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S    PD  T++ ++       + + A+ ++  + E+G +  L     ++    K   TD
Sbjct: 578 S-GVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTD 636

Query: 464 DVVRALNRL 472
           + +R    L
Sbjct: 637 EALRMFQNL 645



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 7/217 (3%)

Query: 293 YEEMKAIG---VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           Y  M   G   V PN+ TY  L+ +   A R          +   G   +   +  LL+ 
Sbjct: 76  YNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 135

Query: 350 YGRARYGEDTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENC 407
               +   D +  V R M + G   +V  YN LL    D   + EA E+ + M     +C
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDC 195

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD  +++++I      G + +A   ++EML+ G  PN+   +S+I    KAQ  D  + 
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 468 ALNRLPELGITPDDRFCGCLLN--VMTQTPKEELGKL 502
            L  + + G+ P+ R    +++    +  PKE +G L
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292


>gi|224054488|ref|XP_002298285.1| predicted protein [Populus trichocarpa]
 gi|222845543|gb|EEE83090.1| predicted protein [Populus trichocarpa]
          Length = 575

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 163/368 (44%), Gaps = 43/368 (11%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           + K  D + AE +   M   G  P+ V+ + L+         N A   F RM + G +P 
Sbjct: 126 YGKLGDFNGAEMVLRSMNGNGYVPNVVSHTALMEAYGRGGRYNNAEAIFRRMQTSGPEPS 185

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYD---RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
           ALTY  ++  +      + A  +++      N     D   F  +I +   AGN++    
Sbjct: 186 ALTYQIILKTFVEGNKFKEAEEVFETLLNKENSPLEPDQKMFHMMIYMQKKAGNYEKARK 245

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           V+  M   GV  + +TYN+L+      K   +V  IY +M  +GL P+  +YA L++AYG
Sbjct: 246 VFALMAERGVPQSTVTYNSLMSFETNYK---EVSKIYDQMQRSGLRPDVVSYALLIKAYG 302

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           RAR  E+ L+V+ EM + G++ S   YN LL   A  G  ++A  +F+ M+  + C PD 
Sbjct: 303 RARREEEALAVFEEMLDAGVRPSHKAYNILLDAFAISGMVEQARVVFKSMR-RDRCTPDL 361

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF------------------------ 447
            ++++M++       +  AE  F  + + G +PN+                         
Sbjct: 362 CSYTTMLSAYVNASDMEGAENFFKRLRQDGLKPNVVTYGALIKGHAKVNNLEKMMEIYEE 421

Query: 448 -----------VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM-TQTP 495
                      +LT+++  YGK +     V     +   G+ PD +    LL++  TQ  
Sbjct: 422 MQLNSIKANQTILTTIMDAYGKNKDFGSAVIWYKEMEHHGVPPDQKAQNILLSLAKTQDE 481

Query: 496 KEELGKLV 503
           ++E  +LV
Sbjct: 482 QKEASQLV 489



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 113/238 (47%), Gaps = 13/238 (5%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  M      +++ K   ++D M   G++PD V+++ LI          +A+  FE 
Sbjct: 260 VTYNSLMSFETNYKEVSK---IYDQMQRSGLRPDVVSYALLIKAYGRARREEEALAVFEE 316

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P    Y+ ++DA+  +G VE A  ++   R ++   D  +++T++  Y  A +
Sbjct: 317 MLDAGVRPSHKAYNILLDAFAISGMVEQARVVFKSMRRDRCTPDLCSYTTMLSAYVNASD 376

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +G  N ++ ++  G+KPN++TY  L+    +     ++  IY+EM  N +  N     +
Sbjct: 377 MEGAENFFKRLRQDGLKPNVVTYGALIKGHAKVNNLEKMMEIYEEMQLNSIKANQTILTT 436

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----------VGYTDE 393
           ++ AYG+ +     +  Y+EM+  G+       N LL++             VGY D+
Sbjct: 437 IMDAYGKNKDFGSAVIWYKEMEHHGVPPDQKAQNILLSLAKTQDEQKEASQLVGYPDD 494



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 115/242 (47%), Gaps = 9/242 (3%)

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           W  +   F  LI  YG  G+F+G   V   M   G  PN++++  L++  GR  R    +
Sbjct: 112 WDFNEMDFLMLITAYGKLGDFNGAEMVLRSMNGNGYVPNVVSHTALMEAYGRGGRYNNAE 171

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
            I++ M  +G  P+  TY  +L+ +    + +  E+        +   ++    +++ ++
Sbjct: 172 AIFRRMQTSGPEPSALTYQIILKTFVEGNKFKEAEEVFETLLNKENSPLEPDQKMFHMMI 231

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDS-WTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
            M    G  ++A ++F  M  +E   P S  T++S+++  +   +VS+   ++++M  +G
Sbjct: 232 YMQKKAGNYEKARKVFALM--AERGVPQSTVTYNSLMSFETNYKEVSK---IYDQMQRSG 286

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
             P++     LI+ YG+A+R ++ +     + + G+ P  +    LL+    +   E  +
Sbjct: 287 LRPDVVSYALLIKAYGRARREEEALAVFEEMLDAGVRPSHKAYNILLDAFAISGMVEQAR 346

Query: 502 LV 503
           +V
Sbjct: 347 VV 348



 Score = 39.7 bits (91), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 6/153 (3%)

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           ++K+ +D     NW      +   G A      +SV R  + K   L   L    L    
Sbjct: 38  VFKDASDEADQKNWRRLMKQIEDTGSA------VSVLRRERIKKDGLPRDLVLGTLVRFK 91

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
            +   D   EI E ++S      +   F  +IT     G  + AE +   M   G+ PN+
Sbjct: 92  QLKKWDLVSEILEWLQSQHWWDFNEMDFLMLITAYGKLGDFNGAEMVLRSMNGNGYVPNV 151

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
              T+L++ YG+  R ++      R+   G  P
Sbjct: 152 VSHTALMEAYGRGGRYNNAEAIFRRMQTSGPEP 184


>gi|414874000|tpg|DAA52557.1| TPA: hypothetical protein ZEAMMB73_743775 [Zea mays]
          Length = 630

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 180/399 (45%), Gaps = 23/399 (5%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N  +K   +  D++ A +LF  M  +G     VT++ L+    +      A+    RM 
Sbjct: 234 FNPVLKAMLRAGDVNGAVKLFRFMQLKGCTLTAVTYNVLLHGLLLCGEARAAMNIMRRME 293

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  P  +TY +++D   + G VE A+ +      +        FS +I  +  +G  D
Sbjct: 294 NEGIVPGLMTYGAVVDGLVKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVD 353

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L V+E M A  VKPN++ Y+ ++D   R+ R  + + +++EM D    PN  TY+S++
Sbjct: 354 RALMVWETMVAARVKPNVVLYSAMIDGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMV 413

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R Y         LS + EM + G   +   Y+ L++   DVG   +A  ++++M     C
Sbjct: 414 RGYFHIANSSRALSTWEEMIKVGCVPTAISYSILISGLCDVGRLKDAMMVWKNMI-GRGC 472

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVV 466
            PD+  ++SM+      G V     +FN+ML  G  +P++     L+       RT+D+ 
Sbjct: 473 APDTIAYTSMMKGLCMSGMVDGGLRLFNDMLAKGDAKPDVISYNVLLDAL---IRTNDLP 529

Query: 467 RA---LNRLPELGITPDDRFCGCLL---NVMTQTPKEELGKLVE--CVEKSNSKLGYVVK 518
           RA   LN++ +    PD   C   L    V+    +E L  LV   C        G VV 
Sbjct: 530 RAMDLLNQMLDQMCDPDTITCNIFLREFGVLEGKGREFLEGLVMRLCYRDRYRAAGDVVM 589

Query: 519 LLLEEQDIEGDFKKEATELFNSI-----SKDVKKAYCNC 552
           ++L +  +      EA   +  +     +K V+K   NC
Sbjct: 590 VMLAKYIV-----PEAGIWYTIVRGVCQTKRVQKVVDNC 623



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 136/293 (46%), Gaps = 10/293 (3%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWF--------ERMPSFGCDPDALTYSSMIDAYG 246
           G+ P  ++F+ L+ C   + +P     +         + +P++   PD  TYS+++ A  
Sbjct: 149 GLTPTLLSFNLLLKCICSSMVPRNPGLYLAVALGILHDVIPAWNLVPDKFTYSTVVSALA 208

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
            AG VE A  L      +   +   AF+ ++K    AG+ +G + ++  M+  G     +
Sbjct: 209 DAGCVEEAVALVHEMVVDG-VVSAEAFNPVLKAMLRAGDVNGAVKLFRFMQLKGCTLTAV 267

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TYN LL  +           I + M + G+ P   TY +++    +    ED   V +EM
Sbjct: 268 TYNVLLHGLLLCGEARAAMNIMRRMENEGIVPGLMTYGAVVDGLVKCGRVEDAWKVAQEM 327

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
             +G+  S  +++ ++      G  D A  ++E M ++   +P+   +S+MI   +  G+
Sbjct: 328 GGQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMVAAR-VKPNVVLYSAMIDGFARSGR 386

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           ++EAE +F EM++A   PN+   +S+++ Y     +   +     + ++G  P
Sbjct: 387 MTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRALSTWEEMIKVGCVP 439



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/316 (19%), Positives = 132/316 (41%), Gaps = 12/316 (3%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST-- 205
            A+ L  F      +   + YNV +     C +   A  +   M + G+ P  +T+    
Sbjct: 249 GAVKLFRFMQLKGCTLTAVTYNVLLHGLLLCGEARAAMNIMRRMENEGIVPGLMTYGAVV 308

Query: 206 --LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
             L+ C R+ +    A +  + M   G  P    +S++I  + ++G V+ A  +++    
Sbjct: 309 DGLVKCGRVED----AWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMVA 364

Query: 264 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
              R+ PN   +S +I  +  +G       ++EEM      PN++TY++++         
Sbjct: 365 A--RVKPNVVLYSAMIDGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANS 422

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
            +  + ++EM   G  P   +Y+ L+         +D + V++ M  +G       Y ++
Sbjct: 423 SRALSTWEEMIKVGCVPTAISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSM 482

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           +      G  D    +F DM +  + +PD  +++ ++        +  A  + N+ML+  
Sbjct: 483 MKGLCMSGMVDGGLRLFNDMLAKGDAKPDVISYNVLLDALIRTNDLPRAMDLLNQMLDQM 542

Query: 442 FEPNLFVLTSLIQCYG 457
            +P+       ++ +G
Sbjct: 543 CDPDTITCNIFLREFG 558


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 169/369 (45%), Gaps = 13/369 (3%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +NV +    K  DL +  +L D+M  +G  P+ VT++TLI    +     KA+   +R
Sbjct: 240 VTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDR 299

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S  C P+ +TY ++I+   + G       +        + ++   +S LI      G 
Sbjct: 300 MVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGK 359

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               + +++EM     + N I Y+ ++D + R  +P +   +  EMT+N   PN  TY+S
Sbjct: 360 SQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSS 419

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSS 404
           L++ +  A  G   + ++++M +     +   Y+ L+  +C D G   EA  ++  M   
Sbjct: 420 LMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKD-GKVKEAMMVWAQM-LG 477

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML--EAGFEPNLFVLTSLIQCYGKAQRT 462
           + C+PD   + SMI   S  G V +A  ++NEML  E   +P++     L+    K    
Sbjct: 478 KGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSI 537

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVM------TQTPKEELGKLVECVEKSNSKLGY- 515
              +  LN + + G  PD   C   L  +       Q  +E L  LV  + K    LG  
Sbjct: 538 SRAIDLLNSMLDRGCDPDLVTCIIFLRTLREKLDPPQDGREFLDGLVVRLLKRQRVLGAS 597

Query: 516 -VVKLLLEE 523
            +V+++L++
Sbjct: 598 KIVEVMLQK 606



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/427 (22%), Positives = 182/427 (42%), Gaps = 11/427 (2%)

Query: 39  TSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTR 98
           ++L   S    ET+  +   H       HG     P S   +    P+    K    D+ 
Sbjct: 6   SALAIPSTKTIETEPQSHPLHRNASDREHGIEHDPPISD-KIFKSGPKMGSYKLG--DST 62

Query: 99  YNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTN---PDTAALALTYF 155
           + SL+   A+L    + E  V   +RC     +E+  V+I         P+ A       
Sbjct: 63  FYSLIDNYANLGDFKSLEK-VLDRMRCEKRVVVEKCFVVIFKAYGKAHLPEKAVGLFDRM 121

Query: 156 TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD-RGVK--PDNVTFSTLISCARM 212
             + +  + V  +N  + V  +     +A   ++ ++  +GV   P+ +TF+ +I     
Sbjct: 122 AYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCK 181

Query: 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
             L + AV+ F  MP   C PD  TY +++D   +A  ++ A  L D  + +     P  
Sbjct: 182 VGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVT 241

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           F+ LI      G+      + + M   G  PN +TYN L+  +    +  +  ++   M 
Sbjct: 242 FNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMV 301

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
            +   PN  TY +++    +     D   V   M+E+G  ++  +Y+ L++     G + 
Sbjct: 302 SSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQ 361

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           EA ++F++M   E C+ ++  +S++I      GK  EA  + +EM     +PN +  +SL
Sbjct: 362 EAMQLFKEMTVKE-CELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSL 420

Query: 453 IQCYGKA 459
           ++ + +A
Sbjct: 421 MKGFFEA 427



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 111/257 (43%), Gaps = 5/257 (1%)

Query: 160 KASKEVILYNVTMK-VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           K    V+ Y   +  + ++ R LD A R+   M +RG   +   +S LIS         +
Sbjct: 304 KCVPNVVTYGTIINGLVKQGRALDGA-RVLALMEERGYHVNEYVYSALISGLFKEGKSQE 362

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A++ F+ M    C+ + + YS++ID   R G  + A  +     N + + +   +S+L+K
Sbjct: 363 AMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMK 422

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            +  AGN    + ++++M       N + Y+ L+  + +  +  +   ++ +M   G  P
Sbjct: 423 GFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKP 482

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREM--KEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
           +   Y S++     A   ED L +Y EM  +E   Q  V  YN LL           A +
Sbjct: 483 DVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAID 542

Query: 397 IFEDMKSSENCQPDSWT 413
           +   M     C PD  T
Sbjct: 543 LLNSM-LDRGCDPDLVT 558



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 115/243 (47%), Gaps = 5/243 (2%)

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           +  +  AYG+A   E A GL+DR   E + +    +F++++ +    G F   L  Y  +
Sbjct: 98  FVVIFKAYGKAHLPEKAVGLFDRMAYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHV 157

Query: 297 ---KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
              K + + PN++T+N ++ TM +         ++++M  +   P+  TY +L+    +A
Sbjct: 158 IGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKA 217

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
              ++ +S+  EM+  G   S   +N L+      G      ++ ++M   + C P+  T
Sbjct: 218 DRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNM-FLKGCAPNEVT 276

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           ++++I     +GK+ +A ++ + M+ +   PN+    ++I    K  R  D  R L  + 
Sbjct: 277 YNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALME 336

Query: 474 ELG 476
           E G
Sbjct: 337 ERG 339



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 5/168 (2%)

Query: 343 YASLLRAYGRARYGEDTLSVYREMK-EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           +  + +AYG+A   E  + ++  M  E   + +V  +N++L +    G    A E +  +
Sbjct: 98  FVVIFKAYGKAHLPEKAVGLFDRMAYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHV 157

Query: 402 KSSE--NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
             ++  N  P+  TF+ +I      G V +A  MF +M  +  +P+++   +L+    KA
Sbjct: 158 IGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKA 217

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
            R D+ V  L+ +   G  P       L+N + +  K +L ++ + V+
Sbjct: 218 DRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCK--KGDLARVAKLVD 263


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 163/333 (48%), Gaps = 36/333 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ +NV +    K   + +A++L   M++ G+ PD VT+++LI    M    N A E F
Sbjct: 259 DMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELF 318

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             MPS GC+PD ++Y+ +I+ Y +   VE A  LY+                        
Sbjct: 319 VSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYN------------------------ 354

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                      EM  +G +PN+ITY++LL  +  A +    K ++  M  +G++ N  TY
Sbjct: 355 -----------EMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTY 403

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
              L    +     + + ++ E+K    +L +   N L+      G  + A+E+FE + S
Sbjct: 404 GIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKL-S 462

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +E  +P+  T++ MI      G+V +A  +  +M   G  P++    +L++ + ++ + +
Sbjct: 463 NEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLE 522

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           +VV+ L+R+ +  ++PD   C  +++++++  K
Sbjct: 523 EVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEK 555



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 139/315 (44%), Gaps = 46/315 (14%)

Query: 188 FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
           F  +L RG  P+ VT++TLI    M +  ++A   F RM   GC PD +TY ++I     
Sbjct: 127 FAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCG 186

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
            GN+ +A  L+    N+  R                         YE    I  KPN+IT
Sbjct: 187 TGNINIALKLHQEMLNDISR-------------------------YE----INCKPNVIT 217

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN-------------WNTYASLLRAYGRAR 354
           YN ++D + +  R  + K +++EM   G+ PN             +N     L   G+  
Sbjct: 218 YNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVI 277

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             +  L V   M E G+   +  YN+L+     VG  + A E+F  M  S+ C+PD  ++
Sbjct: 278 EAKKLLGV---MIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSM-PSKGCEPDVISY 333

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + +I   S   KV EA  ++NEML  G  PN+    SL++    A + DD  +  + +  
Sbjct: 334 NVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKA 393

Query: 475 LGITPDDRFCGCLLN 489
            GI  +    G  L+
Sbjct: 394 HGIAENSYTYGIFLD 408


>gi|168036199|ref|XP_001770595.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678116|gb|EDQ64578.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 743

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 98/428 (22%), Positives = 198/428 (46%), Gaps = 17/428 (3%)

Query: 155 FTNKLKASKEVIL-YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
           F++ L++  +V+  Y+  + ++ +C   +KAE++ +DM +  + PD   +   ++     
Sbjct: 104 FSHMLQSGIQVVAAYSAMIAIYTRCGFFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQ 163

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
               +A    + M   G     + Y+SMI AYG+AG  E A  L+++ +      D   +
Sbjct: 164 GKIEEAEHIMDTMERLGMHLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTY 223

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           S +I   G AG     L+ ++ MK +G+ P    +N L+   G+A+    +  +  +M +
Sbjct: 224 SCMIGACGRAGKLRDALDYFQAMKRLGIMPASSNFNTLISLYGKARNVVGIVRVLADMKN 283

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
            G +P+  T  +++RAY RA   +  + V   ++E G       Y TLL +        E
Sbjct: 284 FGCTPDSQTLDAVVRAYERAGQTKKVVQVLSLLREAGWVEDTESYGTLLHVYLKCNLQKE 343

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A  +F  M+ +    P  +   S+I  C   G   +A  +F +M  AG  P+L    ++I
Sbjct: 344 ALSVFSAMRKA-GMAPKEYMCRSLICACKDAGMFEDATNVFRDMQSAGVVPSLETSCTMI 402

Query: 454 QCY---GKAQRTDDVVRAL-NRLPELGITPDDRFCGCLLNV-MTQTPKEELGKLVECVEK 508
             +   G  ++ +++ R+L + + +L I   +     ++NV M     EE  ++ + +E+
Sbjct: 403 NVHGLKGDVKQAEELFRSLRSSVSKLDIIAYN----VIINVYMRYGMHEEAFRIYKLMEE 458

Query: 509 SNSKL--GYVVKLLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLL 563
            +  L   Y    +L     + + + +A E++  +     ++ +  CNC+++ C     L
Sbjct: 459 EDGLLPDSYTYHSMLRMCQ-KCNLQTQAEEIYWRLRNSDVELDEVMCNCVLNTCARFLPL 517

Query: 564 ENACKLLE 571
           E   K+ +
Sbjct: 518 EEVHKIFQ 525



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 198/467 (42%), Gaps = 50/467 (10%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K    V  YN+  K+    +     + L   ML  G  PD+ TF+TLI  A   +  + A
Sbjct: 6   KTRGNVYSYNIMFKILGSRQQWPIIDELLGQMLGDGCVPDDYTFNTLIMSASKADYADYA 65

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              F+ M   G  P  LTYS M+  Y + G VE A   +        ++   A+S +I +
Sbjct: 66  TRAFQMMLEKGVQPTRLTYSMMMLLYQKNGKVEDAEVAFSHMLQSGIQV-VAAYSAMIAI 124

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           Y   G F+    + E+M    + P+   +   ++T G+  +  + + I   M   G+   
Sbjct: 125 YTRCGFFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTMERLGMHLG 184

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
              Y S++ AYG+A   E  L ++ +MKE G++     Y+ ++  C   G   +A + F+
Sbjct: 185 VVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKLRDALDYFQ 244

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
            MK      P S  F+++I++      V     +  +M   G  P+   L ++++ Y +A
Sbjct: 245 AMKRL-GIMPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDSQTLDAVVRAYERA 303

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ-------------------TPKEELG 500
            +T  VV+ L+ L E G   D    G LL+V  +                    PKE + 
Sbjct: 304 GQTKKVVQVLSLLREAGWVEDTESYGTLLHVYLKCNLQKEALSVFSAMRKAGMAPKEYMC 363

Query: 501 KLVEC-------------VEKSNSKLGYVVKL-----LLEEQDIEGDFKKEATELFNSIS 542
           + + C             V +     G V  L     ++    ++GD  K+A ELF S+ 
Sbjct: 364 RSLICACKDAGMFEDATNVFRDMQSAGVVPSLETSCTMINVHGLKGDV-KQAEELFRSLR 422

Query: 543 KDVKK----AYCNCLIDLCVNLNLLENACKLLEL-----GLTLEVYT 580
             V K    AY N +I++ +   + E A ++ +L     GL  + YT
Sbjct: 423 SSVSKLDIIAY-NVIINVYMRYGMHEEAFRIYKLMEEEDGLLPDSYT 468



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 157/390 (40%), Gaps = 72/390 (18%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWF 223
           V+ YN  +  + K    +KA RLF+ M + G++PD VT+S +I +C R   L + A+++F
Sbjct: 185 VVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKLRD-ALDYF 243

Query: 224 ERMP-----------------------------------SFGCDPDALTYSSMIDAYGRA 248
           + M                                    +FGC PD+ T  +++ AY RA
Sbjct: 244 QAMKRLGIMPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDSQTLDAVVRAYERA 303

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           G  +    +    R   W  D  ++ TL+ +Y         L+V+  M+  G+ P     
Sbjct: 304 GQTKKVVQVLSLLREAGWVEDTESYGTLLHVYLKCNLQKEALSVFSAMRKAGMAPKEYMC 363

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
            +L+     A        ++++M   G+ P+  T  +++  +G     +    ++R ++ 
Sbjct: 364 RSLICACKDAGMFEDATNVFRDMQSAGVVPSLETSCTMINVHGLKGDVKQAEELFRSLRS 423

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS-CRGK- 426
              +L +  YN ++ +    G  +EAF I++ M+  +   PDS+T+ SM+ +C  C  + 
Sbjct: 424 SVSKLDIIAYNVIINVYMRYGMHEEAFRIYKLMEEEDGLLPDSYTYHSMLRMCQKCNLQT 483

Query: 427 ---------------------------------VSEAEAMFNEMLEAGFEPNLFVLTSLI 453
                                            + E   +F EM++ G  PN      +I
Sbjct: 484 QAEEIYWRLRNSDVELDEVMCNCVLNTCARFLPLEEVHKIFQEMIDVGCIPNTITFNVMI 543

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRF 483
             YGK+   D    A     +LG+     F
Sbjct: 544 DLYGKSGMLDRARDASKLAQQLGVADKITF 573



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 151/331 (45%), Gaps = 8/331 (2%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF-GCDPDALTY 238
           D+ +AE LF  +     K D + ++ +I+      +  +A   ++ M    G  PD+ TY
Sbjct: 410 DVKQAEELFRSLRSSVSKLDIIAYNVIINVYMRYGMHEEAFRIYKLMEEEDGLLPDSYTY 469

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
            SM+    +      A  +Y R RN    +D    + ++         +    +++EM  
Sbjct: 470 HSMLRMCQKCNLQTQAEEIYWRLRNSDVELDEVMCNCVLNTCARFLPLEEVHKIFQEMID 529

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
           +G  PN IT+N ++D  G++    + +   K     G++    T+++L+ +YG+ +   +
Sbjct: 530 VGCIPNTITFNVMIDLYGKSGMLDRARDASKLAQQLGVADKI-TFSTLINSYGKKQDFRN 588

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
             +   EM+  G   S+  YN +L      G+ D+  ++   M+ S   Q D  +++ +I
Sbjct: 589 MEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEKS-GLQMDLASYNILI 647

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
            I     K++E EA+F++M E GF P+ +   ++I+ YG A   D  V     + + GI 
Sbjct: 648 NIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTYGYADYPDKAVDTFKMMQDSGIM 707

Query: 479 PDDRFCGCLLNVMTQTPKEELGKLVECVEKS 509
           PD      +  VM     E+ G L+E    S
Sbjct: 708 PDR-----VTYVMLVAAFEKAGNLLEAARWS 733



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 137/283 (48%), Gaps = 18/283 (6%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAV-EWFER 225
           Y+  +++ +KC    +AE ++  + +  V+ D V  + ++ +CAR   LP + V + F+ 
Sbjct: 469 YHSMLRMCQKCNLQTQAEEIYWRLRNSDVELDEVMCNCVLNTCARF--LPLEEVHKIFQE 526

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN------EKWRIDPNAFSTLIKL 279
           M   GC P+ +T++ MID YG++G       + DRAR+      +    D   FSTLI  
Sbjct: 527 MIDVGCIPNTITFNVMIDLYGKSG-------MLDRARDASKLAQQLGVADKITFSTLINS 579

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           YG   +F        EM+  G   ++  YN +LD  G+A    +++ +   M  +GL  +
Sbjct: 580 YGKKQDFRNMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEKSGLQMD 639

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             +Y  L+  YGR     +  +++ +M+E+G       YNT++       Y D+A + F+
Sbjct: 640 LASYNILINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTYGYADYPDKAVDTFK 699

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            M+ S    PD  T+  ++      G + EA      M +AG+
Sbjct: 700 MMQDS-GIMPDRVTYVMLVAAFEKAGNLLEAARWSLWMTQAGY 741



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 152/331 (45%), Gaps = 4/331 (1%)

Query: 131 LEQDCVIILNNMTNPDTAALALTYFTNKLKASK-EVILYNVTMKVFRKCRDLDKAERLFD 189
           LE  C +I  +    D       + + +   SK ++I YNV + V+ +    ++A R++ 
Sbjct: 395 LETSCTMINVHGLKGDVKQAEELFRSLRSSVSKLDIIAYNVIINVYMRYGMHEEAFRIYK 454

Query: 190 DMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
            M +  G+ PD+ T+ +++   +  NL  +A E + R+ +   + D +  + +++   R 
Sbjct: 455 LMEEEDGLLPDSYTYHSMLRMCQKCNLQTQAEEIYWRLRNSDVELDEVMCNCVLNTCARF 514

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
             +E    ++    +     +   F+ +I LYG +G  D   +  +  + +GV  + IT+
Sbjct: 515 LPLEEVHKIFQEMIDVGCIPNTITFNVMIDLYGKSGMLDRARDASKLAQQLGV-ADKITF 573

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           + L+++ G+ +    ++    EM + G   +   Y  +L AYG+A + +    V   M++
Sbjct: 574 STLINSYGKKQDFRNMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEK 633

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G+Q+ +  YN L+ +        E   +F  M+  E   PD WT+++MI          
Sbjct: 634 SGLQMDLASYNILINIYGRHTKIAEMEALFHKMQE-EGFIPDRWTYNTMIRTYGYADYPD 692

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +A   F  M ++G  P+      L+  + KA
Sbjct: 693 KAVDTFKMMQDSGIMPDRVTYVMLVAAFEKA 723



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 107/234 (45%), Gaps = 2/234 (0%)

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
           N K R +  +++ + K+ G+   +     +  +M   G  P+  T+N L+ +  +A    
Sbjct: 4   NGKTRGNVYSYNIMFKILGSRQQWPIIDELLGQMLGDGCVPDDYTFNTLIMSASKADYAD 63

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
                ++ M + G+ P   TY+ ++  Y +    ED    +  M + G+Q+ V  Y+ ++
Sbjct: 64  YATRAFQMMLEKGVQPTRLTYSMMMLLYQKNGKVEDAEVAFSHMLQSGIQV-VAAYSAMI 122

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
           A+    G+ ++A +I EDM  +    PD   +   +     +GK+ EAE + + M   G 
Sbjct: 123 AIYTRCGFFEKAEKIMEDM-WNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTMERLGM 181

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
              +    S+I  YGKA   +  +R   ++ E G+ PD+    C++    +  K
Sbjct: 182 HLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGK 235


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 151/327 (46%), Gaps = 17/327 (5%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y + +  F K   L +A + FD+M+  G  P+ VT++ LI         + A E F
Sbjct: 514 DVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELF 573

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK--------WRI------D 269
           E M S GC P+ +TY+++ID + ++G +E A  +Y R R           ++I      D
Sbjct: 574 EMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRD 633

Query: 270 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
           PN F+   L+     A       ++ + M   G +PN I Y+ L+D   +  +  + + +
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           + +M++ G  PN  TY+SL+    + +  +  L V   M E     +V +Y  ++     
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           VG TDEA+ +   M   + C P+  T+++MI      GKV +   +  +M   G  PN  
Sbjct: 754 VGKTDEAYRLMS-MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFV 812

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPE 474
               LI     A   DD  + L+ + +
Sbjct: 813 TYRVLINHCCAAGLLDDAHQLLDEMKQ 839



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 144/316 (45%), Gaps = 17/316 (5%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +D A  LF++M    V PD  T++ LI       L  +A +WF+ M   GC P+ +TY++
Sbjct: 496 VDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTA 555

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I AY +A  +  A  L++   +E    +   ++ LI  +  +G  +    +Y  M+   
Sbjct: 556 LIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNA 615

Query: 301 ----------------VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                             PN+ TY  L+D + +A +  + + +   M+  G  PN   Y 
Sbjct: 616 DIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYD 675

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+  + +    ++   V+ +M E+G   +V  Y++L+         D A ++   M  +
Sbjct: 676 ALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLEN 735

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            +C P+   ++ MI      GK  EA  + + M E G  PN+   T++I  +GKA + D 
Sbjct: 736 -SCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDK 794

Query: 465 VVRALNRLPELGITPD 480
            +  + ++   G  P+
Sbjct: 795 CLELMRQMGAKGCAPN 810



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 137/316 (43%), Gaps = 17/316 (5%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           L+ AE+ + +MLD  V  + V  S L  C        KA      M S G  PD  TYS 
Sbjct: 426 LELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSK 485

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I     A  V+ AF L++  ++     D   ++ LI  +   G        ++EM   G
Sbjct: 486 VIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG 545

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
             PN++TY  L+    +A++      +++ M   G  PN  TY +L+  + ++   E   
Sbjct: 546 CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKAC 605

Query: 361 SVYREMKEKGMQLSVTL----------------YNTLLAMCADVGYTDEAFEIFEDMKSS 404
            +Y  M+       V +                Y  L+          EA ++  D+ S 
Sbjct: 606 QIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLL-DVMSV 664

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           E C+P+   + ++I      GK+ EA+ +F +M E G+ PN++  +SLI    K +R D 
Sbjct: 665 EGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDL 724

Query: 465 VVRALNRLPELGITPD 480
            ++ L+R+ E    P+
Sbjct: 725 ALKVLSRMLENSCAPN 740



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 156/365 (42%), Gaps = 48/365 (13%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRG-------------------------------- 195
           YN  ++VF +   LD A  +  +M D G                                
Sbjct: 235 YNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEE 294

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
            K D V ++ +IS     +L  +A+++  RM S  C P+ +TY  ++    R   +    
Sbjct: 295 FKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCK 354

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            +      E        F++LI  Y  +G++     + ++M   G +P  + YN L+  +
Sbjct: 355 RILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGI 414

Query: 316 -GRAKRP-----WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            G  K P        +  Y EM D  +  N    ++L R    A   E   S+ REM  K
Sbjct: 415 CGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSK 474

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G     + Y+ ++ +  +    D AF +FE+MKS+ +  PD +T++ +I      G + +
Sbjct: 475 GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSN-HVVPDVFTYTILIDSFCKVGLLQQ 533

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           A   F+EM+  G  PN+   T+LI  Y KA++    + + N L E+ ++      GC+ N
Sbjct: 534 ARKWFDEMVRDGCAPNVVTYTALIHAYLKARK----MSSANELFEMMLSE-----GCIPN 584

Query: 490 VMTQT 494
           V+T T
Sbjct: 585 VVTYT 589



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 134/303 (44%), Gaps = 3/303 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y+  +  F K   LD+A+ +F  M +RG  P+  T+S+LI     +   + A++   R
Sbjct: 672 IVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSR 731

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M    C P+ + Y+ MID   + G  + A+ L      +    +   ++ +I  +G AG 
Sbjct: 732 MLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGK 791

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D CL +  +M A G  PN +TY  L++    A        +  EM       +   Y  
Sbjct: 792 VDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRK 851

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS-S 404
           ++  + R      +L +  E+ E      +  Y  L+      G  + A E+ ++M S +
Sbjct: 852 VIEGFNREFI--ISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCT 909

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
                D   +SS+I   S   KV +A  ++ +M++ G  P L +   L++   +  R ++
Sbjct: 910 SYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEE 969

Query: 465 VVR 467
            ++
Sbjct: 970 ALQ 972



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 119/291 (40%), Gaps = 51/291 (17%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-----------SC---A 210
           V+ Y   +  + K R +  A  LF+ ML  G  P+ VT++ LI           +C   A
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 211 RMN---NLPN----------------------------------KAVEWFERMPSFGCDP 233
           RM    ++P+                                  +A +  + M   GC+P
Sbjct: 610 RMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEP 669

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           + + Y ++ID + + G ++ A  ++ +     +  +   +S+LI         D  L V 
Sbjct: 670 NHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVL 729

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
             M      PN+I Y  ++D + +  +  +   +   M + G  PN  TY +++  +G+A
Sbjct: 730 SRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKA 789

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
              +  L + R+M  KG   +   Y  L+  C   G  D+A ++ ++MK +
Sbjct: 790 GKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQT 840



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 125/307 (40%), Gaps = 20/307 (6%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           D G KP  +T++ L+      +  + A      M   G + D  T    +    +AG   
Sbjct: 225 DLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWR 284

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  L ++   E++++D   ++ +I     A  F+  ++    M++    PN++TY  LL
Sbjct: 285 EALALIEK---EEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL 341

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
               R ++  + K I   M   G  P+   + SL+ AY R+        + ++M + G Q
Sbjct: 342 CGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQ 401

Query: 373 LSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI-----CSC-RG 425
               +YN L+  +C +      + ++ E  + +     D+    + + +     C C  G
Sbjct: 402 PGYVVYNILIGGICGNEKLP--SLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAG 459

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----- 480
           K  +A ++  EM+  GF P+    + +I     A + D+       +    + PD     
Sbjct: 460 KFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYT 519

Query: 481 ---DRFC 484
              D FC
Sbjct: 520 ILIDSFC 526



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/274 (20%), Positives = 119/274 (43%), Gaps = 6/274 (2%)

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           ++S  +   L  K   W  R   +G       Y ++++  G  GN  +        R+E 
Sbjct: 135 VLSLVKNPELGVKFFIWAGRQIGYG--HTGPVYHALLEVLGCGGNDRVPEQFLREIRDED 192

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
             I     + LI+     G ++  L     +K +G KP+ +TYN L+     A R     
Sbjct: 193 KEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAY 252

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            +++EM+D+G + +  T    +    +A    + L++   ++++  +L   +Y  +++  
Sbjct: 253 LVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALAL---IEKEEFKLDTVIYTQMISGL 309

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            +    +EA +    M+SS +C P+  T+  ++  C  + ++   + + + M+  G  P+
Sbjct: 310 CEASLFEEAMDFLSRMRSS-SCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPS 368

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             +  SLI  Y ++       + L ++ + G  P
Sbjct: 369 RRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQP 402



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 114/252 (45%), Gaps = 6/252 (2%)

Query: 150 LALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           LAL   +  L+ S    VI+Y   +    K    D+A RL   M ++G  P+ VT++ +I
Sbjct: 724 LALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMI 783

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                    +K +E   +M + GC P+ +TY  +I+    AG ++ A  L D  +   W 
Sbjct: 784 DGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWP 843

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                +  +I+  G    F   L + +E+      P +  Y  L+D+  +A R      +
Sbjct: 844 KHMAGYRKVIE--GFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALEL 901

Query: 328 YKEMTD--NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
           +KEM+   +  + + + Y+SL+ +   A   +    +Y +M ++G    ++++  L+   
Sbjct: 902 HKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGL 961

Query: 386 ADVGYTDEAFEI 397
             +   +EA ++
Sbjct: 962 IRINRWEEALQL 973


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 163/352 (46%), Gaps = 5/352 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I Y+  +  + K    D A RLFD+M D  ++P    ++TL+          KA++ F
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLF 291

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   GC P   TY+ +I   G+AG V+ A+G Y     +    D    + L+ + G  
Sbjct: 292 EEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKV 351

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNT 342
           G  +   NV+ EM      P +++YN ++  +  +K    +V + + +M  + +SP+  T
Sbjct: 352 GRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFT 411

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y+ L+  Y +    E  L +  EM EKG       Y +L+         + A E+F+++K
Sbjct: 412 YSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELK 471

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            +      S  ++ MI      GK+SEA  +FNEM   G  P+++   +L+    KA   
Sbjct: 472 ENFG-NVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMI 530

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQT--PKEELGKLVECVEKSNSK 512
           ++    L ++ E G   D      +LN   +T  P+  + ++ E ++ S  K
Sbjct: 531 NEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAI-EMFETIKHSGIK 581



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 146/305 (47%), Gaps = 3/305 (0%)

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG- 230
           +K   + + + KA  +F     R  KP + T++++I          K  E +  M + G 
Sbjct: 169 VKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD 228

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           C PD +TYS++I +Y + G  + A  L+D  ++   +     ++TL+ +Y   G  +  L
Sbjct: 229 CFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKAL 288

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
           +++EEMK  G  P + TY  L+  +G+A R  +    YK+M  +GL+P+     +L+   
Sbjct: 289 DLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNIL 348

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQP 409
           G+    E+  +V+ EM       +V  YNT++ A+     +  E    F+ MK +++  P
Sbjct: 349 GKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMK-ADSVSP 407

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
             +T+S +I       +V +A  +  EM E GF P      SLI   GKA+R +      
Sbjct: 408 SEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELF 467

Query: 470 NRLPE 474
             L E
Sbjct: 468 KELKE 472



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 147/310 (47%), Gaps = 11/310 (3%)

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
           +K+F+   D +KA  +        +K D+    +++      N+  +  +W  +  +F  
Sbjct: 71  VKIFKWGPDAEKALEVLK------LKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNF-- 122

Query: 232 DPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
             D  TY ++I     A    EM   + +  RN    + P   S L+K  G A      L
Sbjct: 123 QHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKAL 182

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRA 349
           +V+ + K    KP   TYN+++  + +  +  +V  +Y EM + G   P+  TY++L+ +
Sbjct: 183 SVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISS 242

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
           Y +    +  + ++ EMK+  MQ +  +Y TLL +   VG  ++A ++FE+MK +  C P
Sbjct: 243 YEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRA-GCSP 301

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
             +T++ +I      G+V EA   + +ML  G  P++  L +L+   GK  R +++    
Sbjct: 302 TVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVF 361

Query: 470 NRLPELGITP 479
           + +     TP
Sbjct: 362 SEMGMWRCTP 371



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 138/309 (44%), Gaps = 9/309 (2%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKL------KASKEVILYNV 170
           D+ +   + +  D L  D V+ LNN+ N       +   TN        + +  V+ YN 
Sbjct: 320 DEAYGFYKDMLRDGLTPD-VVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNT 378

Query: 171 TMK-VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
            +K +F     + +    FD M    V P   T+S LI      N   KA+   E M   
Sbjct: 379 VIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEK 438

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
           G  P    Y S+I+A G+A   E A  L+   +     +    ++ +IK +G  G     
Sbjct: 439 GFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEA 498

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           ++++ EMK  G  P++  YN L+  M +A    +  ++ ++M +NG   + N++  +L  
Sbjct: 499 VDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNG 558

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
           + R       + ++  +K  G++     YNTLL   A  G  +EA  +  +MK  +  + 
Sbjct: 559 FARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMK-DKGFEY 617

Query: 410 DSWTFSSMI 418
           D+ T+SS++
Sbjct: 618 DAITYSSIL 626



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 138/307 (44%), Gaps = 2/307 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE-W 222
           +V+  N  M +  K   +++   +F +M      P  V+++T+I     +      V  W
Sbjct: 337 DVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSW 396

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F++M +    P   TYS +ID Y +   VE A  L +    + +   P A+ +LI   G 
Sbjct: 397 FDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGK 456

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           A  ++    +++E+K      +   Y  ++   G+  +  +   ++ EM + G  P+   
Sbjct: 457 AKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYA 516

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +L+    +A    +  S+ R+M+E G +  +  +N +L   A  G    A E+FE +K
Sbjct: 517 YNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIK 576

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            S   +PD  T+++++   +  G   EA  M  EM + GFE +    +S++   G     
Sbjct: 577 HS-GIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHE 635

Query: 463 DDVVRAL 469
            D V + 
Sbjct: 636 KDDVSSF 642


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 166/360 (46%), Gaps = 15/360 (4%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           ++N + N     +A+  +   +++  E  VI YN  +       + + A  +F  M   G
Sbjct: 169 LINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNG 228

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
            KP+ VT++T+I     + L N A+++   M   G  PDA+TY+S++      G +  A 
Sbjct: 229 CKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEAT 288

Query: 256 GLYDRARNEKWRIDPNAFSTLI------KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
            L+ R      + D   ++ +I      +L   A +F        EM   G+ P+++TY 
Sbjct: 289 RLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADF------LSEMVDQGIPPDVVTYT 342

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            +L  +    +  +   ++K+M   G  P+   Y +++ +  + R   D +    EM ++
Sbjct: 343 TILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDR 402

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G+  +   Y+T+L    ++G  DEA ++F++M    N  P++ TFS ++      G VSE
Sbjct: 403 GIPPNAVTYSTILHGFCNLGQLDEATQLFKEM-VGRNVMPNTLTFSILVDGLCQEGMVSE 461

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           A  +F  M E G EPN++   +L+  Y    + ++  +    +   G  PD      L+N
Sbjct: 462 ARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILIN 521



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 164/345 (47%), Gaps = 3/345 (0%)

Query: 138 ILNNMTNPDTAALALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           ++N + N     +A+  F    +      V+ YN  +    K R ++ A     +M+ RG
Sbjct: 204 LINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRG 263

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           + PD +T+++++         N+A   F+RM   GC PD +TY+ +ID+  +   V  A 
Sbjct: 264 IPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAA 323

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
                  ++    D   ++T++      G  +  + ++++M+  G KP+++ YN ++D++
Sbjct: 324 DFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSL 383

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            + +          EM D G+ PN  TY+++L  +      ++   +++EM  + +  + 
Sbjct: 384 CKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNT 443

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             ++ L+      G   EA  +FE M + +  +P+ +T+++++     R K++EA  +F 
Sbjct: 444 LTFSILVDGLCQEGMVSEARWVFETM-TEKGVEPNIYTYNALMNGYCLRCKMNEARKVFE 502

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            M+  G  P+L     LI  Y  ++R D     L ++    +TP+
Sbjct: 503 IMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPN 547



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 180/387 (46%), Gaps = 24/387 (6%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN+ +    K R ++ A     +M+D+G+ PD VT++T++         N+A+  F
Sbjct: 302 DVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLF 361

Query: 224 ERMPSFGCDPDALTYSSMIDAY--GRAGNVEMAF--GLYDRARNEKWRIDPNA--FSTLI 277
           ++M   GC PD + Y+++ID+    R  N  M F   + DR       I PNA  +ST++
Sbjct: 362 KKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRG------IPPNAVTYSTIL 415

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             +   G  D    +++EM    V PN +T++ L+D + +     + + +++ MT+ G+ 
Sbjct: 416 HGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVE 475

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           PN  TY +L+  Y       +   V+  M  KG    +  YN L+    +    D+A  +
Sbjct: 476 PNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKAL 535

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
              M S +   P++ T+++++      G++ +A+ +F +M  +G  P L   + L+    
Sbjct: 536 LTQM-SVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLC 594

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV------ECVEKSNS 511
           K    D+ ++    + E  + PD      L+  M    K E+ K +      + ++    
Sbjct: 595 KHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGR 654

Query: 512 KLGYVVKLLLEEQDIEGDFKKEATELF 538
               ++K LL+E         EA ELF
Sbjct: 655 TYNVMIKGLLKE-----GLSDEAYELF 676



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 171/363 (47%), Gaps = 12/363 (3%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALA  Y   ++     ++ +   +    K +       L + M   GV     + + LI+
Sbjct: 77  ALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILIN 136

Query: 209 C-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           C  R+N++ + AV  + +M   G  PD +T++++I+     G +++A  LY+        
Sbjct: 137 CLCRLNHV-DFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHE 195

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D  +++TLI     +GN +  ++V+++M+  G KPN++TYN ++D++ + +        
Sbjct: 196 PDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDF 255

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
             EM   G+ P+  TY S++          +   +++ M++ G +  V  YN ++     
Sbjct: 256 LSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYK 315

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
               ++A +   +M   +   PD  T+++++      G+++EA  +F +M + G +P++ 
Sbjct: 316 DRLVNDAADFLSEM-VDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVV 374

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCGC-LLNVMTQTPKEE 498
              ++I    K +  +D +  L+ + + GI P+          FC    L+  TQ  KE 
Sbjct: 375 AYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEM 434

Query: 499 LGK 501
           +G+
Sbjct: 435 VGR 437



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 137/301 (45%), Gaps = 3/301 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           +D A   F  M     +P  V F   + S A+M    +  V    +M  FG      + +
Sbjct: 74  VDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQY-STVVYLCNQMDLFGVTHTVYSLN 132

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +I+   R  +V+ A  ++ +      + D   F+TLI      G     + +Y EM   
Sbjct: 133 ILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRS 192

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G +P++I+YN L++ +  +        ++K+M  NG  PN  TY +++ +  + R   D 
Sbjct: 193 GHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDA 252

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           +    EM  +G+      YN+++     +G  +EA  +F+ M+ +  C+PD  T++ +I 
Sbjct: 253 MDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQN-GCKPDVVTYNIIID 311

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                  V++A    +EM++ G  P++   T+++       + ++ +R   ++ + G  P
Sbjct: 312 SLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKP 371

Query: 480 D 480
           D
Sbjct: 372 D 372



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 147/345 (42%), Gaps = 51/345 (14%)

Query: 95  YDTRYNSLVKLAADLDSCSATEDDVF--SVLRCLGDDFLEQDCVIILNNMTNPDTAALAL 152
           Y  + N  ++L   ++      D V   +++  L  D L  D +  L+ M +      A+
Sbjct: 350 YLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAV 409

Query: 153 TYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARM 212
           TY T         IL+      F     LD+A +LF +M+ R V P+ +TFS L+     
Sbjct: 410 TYST---------ILHG-----FCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQ 455

Query: 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
             + ++A   FE M   G +P+  TY+++++ Y     +  A  +++    +    D ++
Sbjct: 456 EGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHS 515

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           ++ LI  Y  +   D    +  +M    + PN +TYN ++  +    R    + ++K+M 
Sbjct: 516 YNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMC 575

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL---------- 382
            +G+ P   TY+ LL    +  + ++ L +++ MKEK ++  + LY  L+          
Sbjct: 576 SSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLE 635

Query: 383 -------AMCADV------------------GYTDEAFEIFEDMK 402
                   + AD                   G +DEA+E+F   K
Sbjct: 636 VAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWK 680



 Score = 40.4 bits (93), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +    K   LD+A +LF  M ++ ++PD + ++ LI    +      A   F ++ 
Sbjct: 586 YSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLS 645

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           + G  P   TY+ MI    + G  + A+ L+      KW++
Sbjct: 646 ADGIQPPGRTYNVMIKGLLKEGLSDEAYELF-----RKWKM 681


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 181/402 (45%), Gaps = 19/402 (4%)

Query: 82  PKSPRASKLKEKSYDTR-YNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILN 140
           P  P  S L +     R Y+++V +   +   SA     F+ L  L + F+         
Sbjct: 40  PSEPACSTLIDNLRKARQYDAVVSVYHKM--VSALVLPRFTSLSALTESFV--------- 88

Query: 141 NMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR--GVKP 198
           N  +P  A   L+  T K      V   N+ +K F +    DKA  LF  M      V P
Sbjct: 89  NTHHPSFAFSVLSLMT-KRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVP 147

Query: 199 DNVTFSTLISCARMNNLPNKAVEWFERMPSFG-CDPDALTYSSMIDAYGRAGNVEMAFGL 257
           D VT++TL++         +A   FE M   G C P+ +TYS +ID Y ++G V    GL
Sbjct: 148 DCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGL 207

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
            +    E  + D   +S+LI  +   G+ +    +++EM    V PN++TY+ L+  +GR
Sbjct: 208 LEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGR 267

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
             R  +   + K+MT  G+ P+   Y  L     +     D + V   M +KG +     
Sbjct: 268 TGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLT 327

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           YN ++         D+AF + E M   +  +PD+ T+++++      GK+ EA  ++  +
Sbjct: 328 YNVVVNGLCKEDRMDDAFGVVE-MMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLL 386

Query: 438 LEAGF--EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           L   F  +P++F   +LIQ   K  R  D  R  + + E+G+
Sbjct: 387 LSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGL 428



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 164/369 (44%), Gaps = 36/369 (9%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y V      K      A ++ D M+ +G +P  +T++ +++     +  + A    
Sbjct: 289 DVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVV 348

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYG 281
           E M   G  PDA+TY++++     AG +  A  L+    +EK+ + P+ F+   LI+   
Sbjct: 349 EMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLC 408

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G       ++  M  +G++ N++TYN L++    A++  +   ++K   ++G SPN  
Sbjct: 409 KEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSM 468

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY+ ++    + +       ++ +MK+ G++ +V  YN L+         ++A  +F++M
Sbjct: 469 TYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEM 528

Query: 402 KSSEN----------------------------------CQPDSWTFSSMITICSCRGKV 427
           ++  +                                    PD+ TFS +I   S  G +
Sbjct: 529 RNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGML 588

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
            EA  ++ +M+  G  P + V  SL++ YG    T+ ++  L+++ +  +  D +    +
Sbjct: 589 DEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQMADKDVVLDSKLTSTI 648

Query: 488 LNVMTQTPK 496
           L  +    +
Sbjct: 649 LACLCHMSR 657



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 170/394 (43%), Gaps = 13/394 (3%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S  V+ Y+  M+   +     +A  +  DM  RGV+PD V ++ L      N     A
Sbjct: 250 KVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDA 309

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           ++  + M   G +P  LTY+ +++   +   ++ AFG+ +    +  + D   ++TL+K 
Sbjct: 310 IKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKG 369

Query: 280 YGTAGNFDGCLNVYEEM--KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
              AG     +++++ +  +   VKP++ T NNL+  + +  R      I+  M + GL 
Sbjct: 370 LCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQ 429

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
            N  TY  L+  Y  AR   + L +++   E G   +   Y+ ++     +     A  +
Sbjct: 430 GNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGL 489

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           F  MK S   +P    +++++T       + +A ++F EM       ++     +I    
Sbjct: 490 FCKMKDS-GIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTL 548

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP--KEELG---KLVECVEKSNSK 512
           KA         L+ +  + + PD      L+N  ++     E +G   K+V C       
Sbjct: 549 KAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVP--- 605

Query: 513 LGYVV-KLLLEEQDIEGDFKKEATELFNSISKDV 545
            G VV   LL+   ++G+ +K  + L     KDV
Sbjct: 606 -GVVVFDSLLKGYGLKGETEKIISLLHQMADKDV 638



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 39/286 (13%)

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           P     STLI   R     +  V  + +M S    P   + S++ +++    +   AF +
Sbjct: 40  PSEPACSTLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSV 99

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA--IGVKPNMITYNNLLDTM 315
                   + ++    + ++K +  +G  D  ++++ +MK     V P+ +TYN L++  
Sbjct: 100 LSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGF 159

Query: 316 GRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
            +AKR  + + +++ M   G   PN  TY+ L+  Y ++                     
Sbjct: 160 CKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKS--------------------- 198

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
                         G   E   + E+M+  E  + D + +SS+I+     G +     +F
Sbjct: 199 --------------GEVGEGLGLLEEMER-EGLKADVFVYSSLISAFCGEGDIETGRELF 243

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +EML     PN+   + L+Q  G+  R  +    L  +   G+ PD
Sbjct: 244 DEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPD 289


>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 650

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 168/342 (49%), Gaps = 19/342 (5%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + ++   +    D+A  LF++M+  G+  + V ++TL+       + +KA++ F RM 
Sbjct: 273 YTIMIRTMGRIGKYDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMV 332

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P+  TYS +++     G +    G+ + +   K  +    +S L++     G+  
Sbjct: 333 ETGCRPNEYTYSLVLNLLVAEGQLVRLDGIVEIS---KRYMTQGIYSYLVRTLSKLGHVS 389

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++ +M +  VK    +Y ++L+++  A +  +   +  ++ + G+  +   Y ++ 
Sbjct: 390 EAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVF 449

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A G+ +       ++ +MK+ G    +  YN L++    VG  DEA  IFE+++ S+ C
Sbjct: 450 SALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIFEELERSD-C 508

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD  +++S+I      G V EA   F EM E G  P++   ++L++C+GK +R +    
Sbjct: 509 KPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVE---M 565

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 509
           A +   E+ +       GC  N++T         L++C+EKS
Sbjct: 566 AYSLFEEMLVK------GCQPNIVTYNI------LLDCLEKS 595



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 129/251 (51%), Gaps = 1/251 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y+  ++   K   + +A RLF DM    VK +  ++ +++          +A+E   ++
Sbjct: 374 IYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKI 433

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G   D + Y+++  A G+   +     L+++ + +    D   ++ LI  +G  G  
Sbjct: 434 HEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVGEV 493

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  +N++EE++    KP++I+YN+L++ +G+     +    +KEM + GL+P+  TY++L
Sbjct: 494 DEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTL 553

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  +G+    E   S++ EM  KG Q ++  YN LL      G T EA +++  MK  + 
Sbjct: 554 MECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKSGRTAEAVDLYTKMK-QQG 612

Query: 407 CQPDSWTFSSM 417
             PDS T++ +
Sbjct: 613 LTPDSITYTVL 623



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 101/195 (51%), Gaps = 4/195 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + ++YN       K + +     LF+ M   G  PD  T++ LIS        ++A+  F
Sbjct: 441 DTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIF 500

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E +    C PD ++Y+S+I+  G+ G+V+ A   +   + +    D   +STL++ +G  
Sbjct: 501 EELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKT 560

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              +   +++EEM   G +PN++TYN LLD + ++ R  +   +Y +M   GL+P+  TY
Sbjct: 561 ERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKSGRTAEAVDLYTKMKQQGLTPDSITY 620

Query: 344 ASLLR----AYGRAR 354
             L R    ++G++R
Sbjct: 621 TVLERLQSGSHGKSR 635



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 12/228 (5%)

Query: 269 DPNAFSTLIKLYGTAG---NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           DP  ++ +I +   +     FD   ++ + M    V  N+ T N L+   G  +      
Sbjct: 132 DPFLYNRIILILSRSNLSDRFDRVRSILDSMVKSNVHGNISTVNILIGFFGDTEDLQMCL 191

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AM 384
            + K+    GL  N  TY  LL+AY R+R       VY E++  G +L +  YN LL A+
Sbjct: 192 RLVKKW---GLKMNSFTYKCLLQAYLRSRDSSKAFDVYCEIRRGGHKLDIFAYNMLLDAL 248

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
             D    ++A ++FEDMK   +C+ D ++++ MI      GK  EA  +FNEM+  G   
Sbjct: 249 AKD----EKACQVFEDMK-KRHCRRDEYSYTIMIRTMGRIGKYDEAVGLFNEMITEGLTL 303

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           N+    +L+Q   K +  D  ++  +R+ E G  P++     +LN++ 
Sbjct: 304 NVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLVLNLLV 351



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 95/450 (21%), Positives = 181/450 (40%), Gaps = 76/450 (16%)

Query: 82  PKSPRASKLKEKSYDTRYNSLVKLAADL-DSCSATEDDVFSVLRCLGDDFLEQDCVIILN 140
           P   R   L  +    R  +L+  A +L D+ S   D + S+   L  D   +    IL 
Sbjct: 52  PADVRGYPLPRRHLICRATNLIIGATNLSDAFSDLSDYLSSLTLSLTPDEASE----ILK 107

Query: 141 NMTNPDTAALALTYFTNKL--KASKEVILYNVTMKVFRKCRDLDKAER---LFDDMLDRG 195
           ++ +P   A+    F   L   +  +  LYN  + +  +    D+ +R   + D M+   
Sbjct: 108 SLNSP-LVAVEFFKFVPSLCPNSQNDPFLYNRIILILSRSNLSDRFDRVRSILDSMVKSN 166

Query: 196 VKPDNVTFSTLIS----------CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
           V  +  T + LI           C R+        +W  +M SF       TY  ++ AY
Sbjct: 167 VHGNISTVNILIGFFGDTEDLQMCLRL------VKKWGLKMNSF-------TYKCLLQAY 213

Query: 246 GRAGNVEMAFGLY--------------------DRARNEKW------------RIDPNAF 273
            R+ +   AF +Y                      A++EK             R D  ++
Sbjct: 214 LRSRDSSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKDEKACQVFEDMKKRHCRRDEYSY 273

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           + +I+  G  G +D  + ++ EM   G+  N++ YN L+  + + K   +   ++  M +
Sbjct: 274 TIMIRTMGRIGKYDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVE 333

Query: 334 NGLSPNWNTYA---SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
            G  PN  TY+   +LL A G+    +  + + +    +G      +Y+ L+   + +G+
Sbjct: 334 TGCRPNEYTYSLVLNLLVAEGQLVRLDGIVEISKRYMTQG------IYSYLVRTLSKLGH 387

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
             EA  +F DM S    + +  ++ SM+      GK  EA  M +++ E G   +  +  
Sbjct: 388 VSEAHRLFCDMWSFP-VKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYN 446

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           ++    GK ++   +     ++ + G +PD
Sbjct: 447 TVFSALGKLKQISHIHDLFEKMKKDGPSPD 476


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 163/352 (46%), Gaps = 5/352 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I Y+  +  + K    D A RLFD+M D  ++P    ++TL+          KA++ F
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLF 291

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   GC P   TY+ +I   G+AG V+ A+G Y     +    D    + L+ + G  
Sbjct: 292 EEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKV 351

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNT 342
           G  +   NV+ EM      P +++YN ++  +  +K    +V + + +M  + +SP+  T
Sbjct: 352 GRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFT 411

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y+ L+  Y +    E  L +  EM EKG       Y +L+         + A E+F+++K
Sbjct: 412 YSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELK 471

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            +      S  ++ MI      GK+SEA  +FNEM   G  P+++   +L+    KA   
Sbjct: 472 ENFG-NVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMI 530

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQT--PKEELGKLVECVEKSNSK 512
           ++    L ++ E G   D      +LN   +T  P+  + ++ E ++ S  K
Sbjct: 531 NEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAI-EMFETIKHSGIK 581



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 146/305 (47%), Gaps = 3/305 (0%)

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG- 230
           +K   + + + KA  +F     R  KP + T++++I          K  E +  M + G 
Sbjct: 169 VKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD 228

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           C PD +TYS++I +Y + G  + A  L+D  ++   +     ++TL+ +Y   G  +  L
Sbjct: 229 CFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKAL 288

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
           +++EEMK  G  P + TY  L+  +G+A R  +    YK+M  +GL+P+     +L+   
Sbjct: 289 DLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNIL 348

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQP 409
           G+    E+  +V+ EM       +V  YNT++ A+     +  E    F+ MK +++  P
Sbjct: 349 GKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMK-ADSVSP 407

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
             +T+S +I       +V +A  +  EM E GF P      SLI   GKA+R +      
Sbjct: 408 SEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELF 467

Query: 470 NRLPE 474
             L E
Sbjct: 468 KELKE 472



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 147/310 (47%), Gaps = 11/310 (3%)

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
           +K+F+   D +KA  +        +K D+    +++      N+  +  +W  +  +F  
Sbjct: 71  VKIFKWGPDAEKALEVLK------LKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNF-- 122

Query: 232 DPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
             D  TY ++I     A    EM   + +  RN    + P   S L+K  G A      L
Sbjct: 123 QHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKAL 182

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRA 349
           +V+ + K    KP   TYN+++  + +  +  +V  +Y EM + G   P+  TY++L+ +
Sbjct: 183 SVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISS 242

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
           Y +    +  + ++ EMK+  MQ +  +Y TLL +   VG  ++A ++FE+MK +  C P
Sbjct: 243 YEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRA-GCSP 301

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
             +T++ +I      G+V EA   + +ML  G  P++  L +L+   GK  R +++    
Sbjct: 302 TVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVF 361

Query: 470 NRLPELGITP 479
           + +     TP
Sbjct: 362 SEMGMWRCTP 371



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 138/309 (44%), Gaps = 9/309 (2%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKL------KASKEVILYNV 170
           D+ +   + +  D L  D V+ LNN+ N       +   TN        + +  V+ YN 
Sbjct: 320 DEAYGFYKDMLRDGLTPD-VVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNT 378

Query: 171 TMK-VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
            +K +F     + +    FD M    V P   T+S LI      N   KA+   E M   
Sbjct: 379 VIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEK 438

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
           G  P    Y S+I+A G+A   E A  L+   +     +    ++ +IK +G  G     
Sbjct: 439 GFPPCPAAYCSLINALGKAKRYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEA 498

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           ++++ EMK  G  P++  YN L+  M +A    +  ++ ++M +NG   + N++  +L  
Sbjct: 499 VDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNG 558

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
           + R       + ++  +K  G++     YNTLL   A  G  +EA  +  +MK  +  + 
Sbjct: 559 FARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMK-DKGFEY 617

Query: 410 DSWTFSSMI 418
           D+ T+SS++
Sbjct: 618 DAITYSSIL 626



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 138/307 (44%), Gaps = 2/307 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE-W 222
           +V+  N  M +  K   +++   +F +M      P  V+++T+I     +      V  W
Sbjct: 337 DVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSW 396

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F++M +    P   TYS +ID Y +   VE A  L +    + +   P A+ +LI   G 
Sbjct: 397 FDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGK 456

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           A  ++    +++E+K      +   Y  ++   G+  +  +   ++ EM + G  P+   
Sbjct: 457 AKRYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYA 516

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +L+    +A    +  S+ R+M+E G +  +  +N +L   A  G    A E+FE +K
Sbjct: 517 YNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIK 576

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            S   +PD  T+++++   +  G   EA  M  EM + GFE +    +S++   G     
Sbjct: 577 HS-GIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHE 635

Query: 463 DDVVRAL 469
            D V + 
Sbjct: 636 KDDVSSF 642


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 169/359 (47%), Gaps = 14/359 (3%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K +  V+ Y+  +  + K R   +AE L+D+ML RG+ P+ +T++++I      N  + A
Sbjct: 314 KINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAA 373

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              F  M + GC PD  T++++ID Y  A  ++    L           D   ++TLI  
Sbjct: 374 EHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHG 433

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQV-KTIYKEMTD-- 333
           +   G+ +  L++ ++M + GV P+++T N LLD +   G+ K   ++ K + K   D  
Sbjct: 434 FCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLD 493

Query: 334 -----NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
                NG+ P+  TY  L+          +   +Y+EM  +G+  +   Y++++      
Sbjct: 494 ASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQ 553

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
              DEA ++F+ M  S++  PD  TF+++++     G+V +   +F EM   G   +   
Sbjct: 554 SRLDEATQMFDSM-GSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAIT 612

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
             +LI  + K    +  +     +   G+ PD      +L V+    KEEL + V  +E
Sbjct: 613 YITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWS--KEELKRAVAMLE 669



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 167/344 (48%), Gaps = 7/344 (2%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
           ++  M  PD   ++L     + +   +V  +N+ +K F  C  L  A   F  +   G +
Sbjct: 86  VVVRMERPDLV-ISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQ 144

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           PD VTFSTL+    + +  ++A++ F +M    C P+ +T++++++   R G V  A  L
Sbjct: 145 PDVVTFSTLLHGLCVEDRVSEALDLFHQM----CRPNVVTFTTLMNGLCREGRVVEAVAL 200

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMG 316
            DR   +  + +   + T++      G+    LN+  +M+ +  +KPN++ Y+ ++D + 
Sbjct: 201 LDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLW 260

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +  R      +Y EM + G+ P+  TY  ++  +  +    +   + +EM E+ +  +V 
Sbjct: 261 KDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVV 320

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            Y+ L+          EA E++++M       P++ T++SMI     + ++  AE MF  
Sbjct: 321 TYSALINAYVKERKFFEAEELYDEML-PRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYV 379

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           M   G  P++F   +LI  Y  A+R DD    L+ + E G+  D
Sbjct: 380 MATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVAD 423



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 147/328 (44%), Gaps = 12/328 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++  YN  +  F       +A+RL  +ML+R + P+ VT+S LI+         +A E +
Sbjct: 283 DLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELY 342

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   G  P+ +TY+SMID + +   ++ A  ++     +    D   F+TLI  Y  A
Sbjct: 343 DEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGA 402

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D    +  EM   G+  +  TYN L+              + ++M  +G+ P+  T 
Sbjct: 403 KRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTC 462

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQL-----------SVTLYNTLLAMCADVGYTD 392
            +LL         +D L +++ M++  M L            V  YN L++   + G   
Sbjct: 463 NTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFL 522

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           EA E++++M       P++ T+SSMI     + ++ EA  MF+ M    F P++    +L
Sbjct: 523 EAEELYKEM-PHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTL 581

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  Y KA R DD +     +   GI  D
Sbjct: 582 VSGYCKAGRVDDGLELFCEMGRRGIVAD 609



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 138/332 (41%), Gaps = 49/332 (14%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           +KP+ V +S +I     +   + A   +  M   G  PD  TY+ MID +  +G    A 
Sbjct: 245 IKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQ 304

Query: 256 GLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
            L       K  I+PN   +S LI  Y     F     +Y+EM   G+ PN ITYN+++D
Sbjct: 305 RLLQEMLERK--INPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMID 362

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
              +  R    + ++  M   G SP+  T+ +L+  Y  A+  +D   +  EM E G+  
Sbjct: 363 GFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVA 422

Query: 374 SVTLYNTLL----------------------AMCADV-------------GYTDEAFEIF 398
             T YNTL+                       +C D+             G   +A E+F
Sbjct: 423 DTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMF 482

Query: 399 EDMKSSE----------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           + M+ S+            +PD  T++ +I+     GK  EAE ++ EM   G  PN   
Sbjct: 483 KAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTIT 542

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +S+I    K  R D+  +  + +     +PD
Sbjct: 543 YSSMINGLCKQSRLDEATQMFDSMGSKSFSPD 574



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 141/301 (46%), Gaps = 12/301 (3%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AA  + Y       S +V  +N  +  +   + +D    L  +M + G+  D  T++TLI
Sbjct: 372 AAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLI 431

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
               +    N A++  ++M S G  PD +T ++++D     G ++ A  ++   +  K  
Sbjct: 432 HGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMD 491

Query: 268 IDPN-----------AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           +D +            ++ LI      G F     +Y+EM   G+ PN ITY+++++ + 
Sbjct: 492 LDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLC 551

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +  R  +   ++  M     SP+  T+ +L+  Y +A   +D L ++ EM  +G+     
Sbjct: 552 KQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAI 611

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            Y TL+     VG  + A +IF++M SS    PD+ T  SM+T+   + ++  A AM  +
Sbjct: 612 TYITLIHGFRKVGNINGALDIFQEMISS-GVYPDTITIRSMLTVLWSKEELKRAVAMLED 670

Query: 437 M 437
           +
Sbjct: 671 L 671



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 123/278 (44%), Gaps = 4/278 (1%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A++ F  M      P  + ++ ++    R    ++   LY +   ++   D  +F+ LIK
Sbjct: 61  AIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIK 120

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            + +       L+ + ++  +G +P+++T++ LL  +    R  +   ++ +M      P
Sbjct: 121 CFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMC----RP 176

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N  T+ +L+    R     + +++   M E G+Q +   Y T++     +G T  A  + 
Sbjct: 177 NVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLL 236

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
             M+   + +P+   +S++I      G+ S+A  ++ EM E G  P+LF    +I  +  
Sbjct: 237 RKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCS 296

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           + R  +  R L  + E  I P+      L+N   +  K
Sbjct: 297 SGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERK 334


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 196/410 (47%), Gaps = 4/410 (0%)

Query: 135 CVIILNNMTNPDTAAL--ALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDML 192
           C  +L ++   D  AL   +  F      S +V  Y+  ++ + K R+ D A+++  +M 
Sbjct: 85  CNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMR 144

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +RG   + VT++ LI+    +    +A  + + M  +G  PD  TY ++I+   ++    
Sbjct: 145 ERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSN 204

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  L D     + + +   ++ LI  +   GN D    + +EM A GV+PN ITY+NL+
Sbjct: 205 EAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLV 264

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
             + +  +  +   + K+M  +   P+  TY  ++  + R    +D   +  EM+  G+ 
Sbjct: 265 RGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGIS 324

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  Y+ ++      G  ++A ++ E+M +++  +P+++ ++ +I+     G VS A  
Sbjct: 325 PNVYTYSIMIHGLCQSGEPEKASDLLEEM-TTKGLKPNAFVYAPLISGYCREGNVSLACE 383

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVM 491
           +F++M +    P+L+   SLI    K  R ++  +   ++ E G+ P++  + G +   +
Sbjct: 384 IFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYL 443

Query: 492 TQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 541
                E   +LV+ +  +  K   V+ + L E   + D  ++ +  F S+
Sbjct: 444 KNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM 493



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 162/345 (46%), Gaps = 2/345 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +    K R  ++A+ L D+M    +KP+ V ++ LI         ++A +  + M 
Sbjct: 190 YGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMV 249

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  P+ +TY +++    + G ++ A  L  +   +  R D   ++ +I+ +    N  
Sbjct: 250 AAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKK 309

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +  EM+  G+ PN+ TY+ ++  + ++  P +   + +EMT  GL PN   YA L+
Sbjct: 310 DAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLI 369

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             Y R         ++ +M +  +   +  YN+L+   + VG  +E+ + F  M+     
Sbjct: 370 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQE-RGL 428

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+ +T+S +I      G +  AE +   ML+ G +PN  +   L++ Y K+   + V  
Sbjct: 429 LPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSS 488

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECVEKSNS 511
               + + G+  D+R  G L++ ++ +   E   +++  +EK+ S
Sbjct: 489 TFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGS 533



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 2/298 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  + K  DL+ AE+L   MLD G+KP++V +  L+     ++   K    F+ M 
Sbjct: 435 YSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSML 494

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G   D   Y  +I     +GN+E AF +           D + +S+LI       + +
Sbjct: 495 DQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADRE 554

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + +EM   GV PN++ YN L+D + ++      + ++  +   GL PN  TY SL+
Sbjct: 555 KAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLI 614

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +     +   +Y EM   G+     +Y+ L   C+  G  ++A  + E+M    + 
Sbjct: 615 DGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA 674

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              S  F++++     RGK+ E   + + ++  G  PN   + ++I    +A +  +V
Sbjct: 675 SISS--FNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEV 730



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 148/323 (45%), Gaps = 2/323 (0%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K+    ++  YN  +    K   ++++ + F  M +RG+ P+  T+S LI     N    
Sbjct: 390 KVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLE 449

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
            A +  +RM   G  P+ + Y  ++++Y ++ ++E     +    ++   +D   +  LI
Sbjct: 450 SAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILI 509

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
               ++GN +    V  E++  G  P++  Y++L+  + +     +   I  EM+  G+ 
Sbjct: 510 HNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVD 569

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           PN   Y +L+    ++       +V+  +  KG+  +   Y +L+     VG    AF +
Sbjct: 570 PNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYL 629

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           + +M ++    PD++ +S + T CS  G + +A  +  EM   G   ++    +L+  + 
Sbjct: 630 YNEMLAT-GITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFC 687

Query: 458 KAQRTDDVVRALNRLPELGITPD 480
           K  +  + ++ L+ +   G+ P+
Sbjct: 688 KRGKMQETLKLLHVIMGRGLVPN 710



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 3/222 (1%)

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
           RA ++     P     L+  Y  +G       V   M+  G+ P++   N LL  + RA 
Sbjct: 37  RALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRAD 96

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
               +  + + M   G+SP+  TY++L+ AY + R  +    V  EM+E+G  L+   YN
Sbjct: 97  AMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYN 156

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEML 438
            L+A     G  +EAF   +DM+      PD +T+ ++I  +C  R + +EA+A+ +EM 
Sbjct: 157 VLIAGLCRSGAVEEAFGFKKDMEDY-GLVPDGFTYGALINGLCKSR-RSNEAKALLDEMS 214

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            A  +PN+ V  +LI  + +    D+  + +  +   G+ P+
Sbjct: 215 CAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPN 256



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 127/305 (41%), Gaps = 38/305 (12%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           CR+  +  A  +FD M    V PD   +++LI          ++ ++F +M   G  P+ 
Sbjct: 373 CREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNE 432

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
            TYS +I  Y + G++E A  L  R                                   
Sbjct: 433 FTYSGLIHGYLKNGDLESAEQLVQR----------------------------------- 457

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M   G+KPN + Y +LL++  ++    +V + +K M D G+  +   Y  L+     +  
Sbjct: 458 MLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGN 517

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            E    V  E+++ G    V +Y++L++        ++AF I ++M S +   P+   ++
Sbjct: 518 MEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM-SKKGVDPNIVCYN 576

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           ++I      G +S A  +FN +L  G  PN    TSLI    K     +     N +   
Sbjct: 577 ALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT 636

Query: 476 GITPD 480
           GITPD
Sbjct: 637 GITPD 641



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 116/267 (43%), Gaps = 27/267 (10%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI--SCARMNNLPNKAVEW 222
           ++ YN  +    K  D+  A  +F+ +L +G+ P+ VT+++LI  SC ++ ++ N A   
Sbjct: 572 IVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSC-KVGDISN-AFYL 629

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           +  M + G  PDA  YS +      AG++E A  L +     +     ++F+ L+  +  
Sbjct: 630 YNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMF-LRGHASISSFNNLVDGFCK 688

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G     L +   +   G+ PN +T  N++  +  A +  +V TI+ E+           
Sbjct: 689 RGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARH 748

Query: 343 YASLLRAYGRARYGEDTLSVYREM-----KEKGMQLSVTLYNTLLAMCADVGYT------ 391
           ++SL         G+  L V  +M     KE  +  ++ L + ++A  A +G +      
Sbjct: 749 FSSLF--MDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIV 806

Query: 392 ---------DEAFEIFEDMKSSENCQP 409
                     EA  + ++M    N QP
Sbjct: 807 DNLCRKGKLSEALNLLKEMDKRGNLQP 833


>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Brachypodium distachyon]
          Length = 613

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 157/344 (45%), Gaps = 3/344 (0%)

Query: 126 LGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAE 185
           L DD L     + LN   +P  +      + +  +   ++I YN+ +  + + R L+KAE
Sbjct: 150 LWDDILNVAVQLRLNRQWDPIISVCEWIVYRSSFR--PDIICYNLLIDAYGRKRQLNKAE 207

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
            ++  +L+    P   T++ L+         ++A      M   G  P A  Y++ +D  
Sbjct: 208 SIYAAVLEAQCVPTEDTYALLLRAYCNARSLHRAEGVISEMQEHGIPPSATVYNAYLDGL 267

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
            +A     A  +Y R + E+ R +   ++ +I +YG +      + ++ EM++IG K N+
Sbjct: 268 LKARCTVKAVEVYQRMKKERCRTNTETYTLMINVYGKSKQPMSAMKIFNEMQSIGCKANI 327

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
            TY  L++   R     + + ++++M   G  P+   Y +L+ AY RA + +    ++  
Sbjct: 328 CTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAYSRAGFPQGASEIFSL 387

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M+  G +     YN L+      G   EA   FE +K  +   P   +   +++  +  G
Sbjct: 388 MQHMGCEPDRASYNILVDAYGRAGLHREAEATFESLK-QQGMAPTMKSHMLLLSAHARSG 446

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
            V   E +  ++ ++G  P+ F L +++  Y +A R DD+ R L
Sbjct: 447 NVGRCEQVMAQLHKSGLRPDTFALNAMLHAYARAGRLDDMERLL 490



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 121/278 (43%), Gaps = 7/278 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +  Y   +  F +    +KAE +F+ M   G +PD   ++ L+        P  A E F 
Sbjct: 327 ICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAYSRAGFPQGASEIFS 386

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   GC+PD  +Y+ ++DAYGRAG    A   ++  + +       +   L+  +  +G
Sbjct: 387 LMQHMGCEPDRASYNILVDAYGRAGLHREAEATFESLKQQGMAPTMKSHMLLLSAHARSG 446

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N   C  V  ++   G++P+    N +L    RA R   ++ +   M   G S +  ++ 
Sbjct: 447 NVGRCEQVMAQLHKSGLRPDTFALNAMLHAYARAGRLDDMERLLAAMDLAG-SADVGSHN 505

Query: 345 SLLRAYGRARYGEDTLSVY-----REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             + AY RA Y     + +     R+ K+ G+   V  + + +   A      +  EIFE
Sbjct: 506 VAVNAYARAGYLGRMEAAFEGIRRRKGKKGGIDADVVSWTSRMGGYARKKEYGKCLEIFE 565

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           +M  +  C PD+ T   ++  CS   +V +  A+   M
Sbjct: 566 EMVDA-GCYPDAGTAKVLMAACSDERQVEQVAAIVRSM 602



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 36/214 (16%)

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           +P++I YN L+D  GR ++  + ++IY  + +    P  +TYA LLRAY  AR       
Sbjct: 184 RPDIICYNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARSLHRAEG 243

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI- 420
           V  EM+E G+  S T+YN  L        T +A E+++ MK  E C+ ++ T++ MI + 
Sbjct: 244 VISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKK-ERCRTNTETYTLMINVY 302

Query: 421 ------------------CSCRGKV----------------SEAEAMFNEMLEAGFEPNL 446
                               C+  +                 +AE +F +M +AG EP++
Sbjct: 303 GKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDV 362

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +   +L++ Y +A          + +  +G  PD
Sbjct: 363 YAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPD 396


>gi|255661206|gb|ACU25772.1| pentatricopeptide repeat-containing protein [Citharexylum
           montevidense]
          Length = 399

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 162/344 (47%), Gaps = 13/344 (3%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV PD V++STL+
Sbjct: 36  AISIFS-RLKRSGIXPDLVAYNSMINVFGKAKLFKEARSLIXEMKTAGVMPDTVSYSTLL 94

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+    + A  L+   R  K  
Sbjct: 95  TMYVENQKFLEALSVFAEMREIKCSFDLTTCNIMIDVYGQLDMAKEADKLFWSMR--KIG 152

Query: 268 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  S  TL+++YG A  F   J+++  M+   ++ N++TYN ++   G+     +  
Sbjct: 153 IEPNVISYNTLLRVYGDAELFGEAJHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKAN 212

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM + G+ PN  TY+++                    +  G+ +   LY T++   
Sbjct: 213 NLIQEMHNRGIEPNAITYSTIXXXXXXXXXXXXXXXXXXXXRSSGVDIDQVLYQTMIVAY 272

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG   +
Sbjct: 273 ERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILARAGRIEEATWVFRQAIDAGEVKD 327

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V + +I  + K ++  +VV   +++   G  PD      +LN
Sbjct: 328 ITVFSRMIDLFSKYKKYANVVEVFDKMRGFGYFPDSNVIALVLN 371



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 130/286 (45%), Gaps = 1/286 (0%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V  D V +S LI  +R     +KA+  F R+   G  PD + Y+SMI+ +G+A   + A 
Sbjct: 13  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGIXPDLVAYNSMINVFGKAKLFKEAR 72

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L    +      D  ++STL+ +Y     F   L+V+ EM+ I    ++ T N ++D  
Sbjct: 73  SLIXEMKTAGVMPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCSFDLTTCNIMIDVY 132

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           G+     +   ++  M   G+ PN  +Y +LLR YG A    + J ++R M+ K ++ +V
Sbjct: 133 GQLDMAKEADKLFWSMRKIGIEPNVISYNTLLRVYGDAELFGEAJHLFRLMQRKNIEQNV 192

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YNT++ +       ++A  + ++M  +   +P++ T+S++                  
Sbjct: 193 VTYNTMMMIYGKTLEHEKANNLIQEMH-NRGIEPNAITYSTIXXXXXXXXXXXXXXXXXX 251

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
               +G + +  +  ++I  Y +A       R L+ L      P D
Sbjct: 252 XXRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRD 297



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 4/226 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AJ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+ +T+ST+  
Sbjct: 176 AJHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNRGIEPNAITYSTIXX 235

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                              S G D D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 236 XXXXXXXXXXXXXXXXXXRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 291

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  ++ ++D   + K+   V  ++
Sbjct: 292 DNIPRDTAIHILARAGRIEEATWVFRQAIDAGEVKDITVFSRMIDLFSKYKKYANVVEVF 351

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
            +M   G  P+ N  A +L AYG+    +    VY  M+++G   S
Sbjct: 352 DKMRGFGYFPDSNVIALVLNAYGKLHEFDRANDVYMSMQDEGCAFS 397



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 125/315 (39%), Gaps = 42/315 (13%)

Query: 151 ALTYFT--NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL+ F    ++K S ++   N+ + V+ +     +A++LF  M   G++P+ ++++TL+ 
Sbjct: 106 ALSVFAEMREIKCSFDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGIEPNVISYNTLLR 165

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 L  +A+  F  M     + + +TY++M+  YG+    E A              
Sbjct: 166 VYGDAELFGEAJHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKAN------------- 212

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
                                 N+ +EM   G++PN ITY+ +                 
Sbjct: 213 ----------------------NLIQEMHNRGIEPNAITYSTIXXXXXXXXXXXXXXXXX 250

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
                +G+  +   Y +++ AY RA        +  E+K           +T + + A  
Sbjct: 251 XXXRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRP----DNIPRDTAIHILARA 306

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G  +EA  +F     +   + D   FS MI + S   K +    +F++M   G+ P+  V
Sbjct: 307 GRIEEATWVFRQAIDAGEVK-DITVFSRMIDLFSKYKKYANVVEVFDKMRGFGYFPDSNV 365

Query: 449 LTSLIQCYGKAQRTD 463
           +  ++  YGK    D
Sbjct: 366 IALVLNAYGKLHEFD 380



 Score = 45.4 bits (106), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            LS  +EM++  +   + LY+ L+ +   +    +A  IF  +K S    PD   ++SMI
Sbjct: 1   ALSRLQEMEQDHVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRS-GIXPDLVAYNSMI 59

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
            +        EA ++  EM  AG  P+    ++L+  Y + Q+  + +     + E+  +
Sbjct: 60  NVFGKAKLFKEARSLIXEMKTAGVMPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCS 119

Query: 479 PDDRFCGCLLNVMTQ 493
            D   C  +++V  Q
Sbjct: 120 FDLTTCNIMIDVYGQ 134



 Score = 45.4 bits (106), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 74/162 (45%), Gaps = 1/162 (0%)

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           +EM  + +  +   Y++L+    +       +S++  +K  G+   +  YN+++ +    
Sbjct: 6   QEMEQDHVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGIXPDLVAYNSMINVFGKA 65

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
               EA  +  +MK++    PD+ ++S+++T+     K  EA ++F EM E     +L  
Sbjct: 66  KLFKEARSLIXEMKTA-GVMPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCSFDLTT 124

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
              +I  YG+     +  +    + ++GI P+      LL V
Sbjct: 125 CNIMIDVYGQLDMAKEADKLFWSMRKIGIEPNVISYNTLLRV 166


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 151/327 (46%), Gaps = 17/327 (5%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y + +  F K   L +A + FD+M+  G  P+ VT++ LI         + A E F
Sbjct: 514 DVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELF 573

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK--------WRI------D 269
           E M S GC P+ +TY+++ID + ++G +E A  +Y R R           ++I      D
Sbjct: 574 EMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRD 633

Query: 270 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
           PN F+   L+     A       ++ + M   G +PN I Y+ L+D   +  +  + + +
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           + +M++ G  PN  TY+SL+    + +  +  L V   M E     +V +Y  ++     
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           VG TDEA+ +   M   + C P+  T+++MI      GKV +   +  +M   G  PN  
Sbjct: 754 VGKTDEAYRLMS-MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFV 812

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPE 474
               LI     A   DD  + L+ + +
Sbjct: 813 TYRVLINHCCAAGLLDDAHQLLDEMKQ 839



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 144/316 (45%), Gaps = 17/316 (5%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +D A  LF++M    V PD  T++ LI       L  +A +WF+ M   GC P+ +TY++
Sbjct: 496 VDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTA 555

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I AY +A  +  A  L++   +E    +   ++ LI  +  +G  +    +Y  M+   
Sbjct: 556 LIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNA 615

Query: 301 ----------------VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                             PN+ TY  L+D + +A +  + + +   M+  G  PN   Y 
Sbjct: 616 DIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYD 675

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+  + +    ++   V+ +M E+G   +V  Y++L+         D A ++   M  +
Sbjct: 676 ALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLEN 735

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            +C P+   ++ MI      GK  EA  + + M E G  PN+   T++I  +GKA + D 
Sbjct: 736 -SCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDK 794

Query: 465 VVRALNRLPELGITPD 480
            +  + ++   G  P+
Sbjct: 795 CLELMRQMGAKGCAPN 810



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 137/316 (43%), Gaps = 17/316 (5%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           L+ AE+ + +MLD  V  + V  S L  C        KA      M S G  PD  TYS 
Sbjct: 426 LELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSK 485

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I     A  V+ AF L++  ++     D   ++ LI  +   G        ++EM   G
Sbjct: 486 VIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG 545

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
             PN++TY  L+    +A++      +++ M   G  PN  TY +L+  + ++   E   
Sbjct: 546 CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKAC 605

Query: 361 SVYREMKEKGMQLSVTL----------------YNTLLAMCADVGYTDEAFEIFEDMKSS 404
            +Y  M+       V +                Y  L+          EA ++  D+ S 
Sbjct: 606 QIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLL-DVMSV 664

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           E C+P+   + ++I      GK+ EA+ +F +M E G+ PN++  +SLI    K +R D 
Sbjct: 665 EGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDL 724

Query: 465 VVRALNRLPELGITPD 480
            ++ L+R+ E    P+
Sbjct: 725 ALKVLSRMLENSCAPN 740



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 156/365 (42%), Gaps = 48/365 (13%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRG-------------------------------- 195
           YN  ++VF +   LD A  +  +M D G                                
Sbjct: 235 YNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEE 294

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
            K D V ++ +IS     +L  +A+++  RM S  C P+ +TY  ++    R   +    
Sbjct: 295 FKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCK 354

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            +      E        F++LI  Y  +G++     + ++M   G +P  + YN L+  +
Sbjct: 355 RILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGI 414

Query: 316 -GRAKRP-----WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            G  K P        +  Y EM D  +  N    ++L R    A   E   S+ REM  K
Sbjct: 415 CGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSK 474

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G     + Y+ ++ +  +    D AF +FE+MKS+ +  PD +T++ +I      G + +
Sbjct: 475 GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSN-HVVPDVFTYTILIDSFCKVGLLQQ 533

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           A   F+EM+  G  PN+   T+LI  Y KA++    + + N L E+ ++      GC+ N
Sbjct: 534 ARKWFDEMVRDGCAPNVVTYTALIHAYLKARK----MSSANELFEMMLSE-----GCIPN 584

Query: 490 VMTQT 494
           V+T T
Sbjct: 585 VVTYT 589



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 134/303 (44%), Gaps = 3/303 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y+  +  F K   LD+A+ +F  M +RG  P+  T+S+LI     +   + A++   R
Sbjct: 672 IVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSR 731

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M    C P+ + Y+ MID   + G  + A+ L      +    +   ++ +I  +G AG 
Sbjct: 732 MLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGK 791

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D CL +  +M A G  PN +TY  L++    A        +  EM       +   Y  
Sbjct: 792 VDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRK 851

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS-S 404
           ++  + R      +L +  E+ E      +  Y  L+      G  + A E+ ++M S +
Sbjct: 852 VIEGFNREFI--ISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCT 909

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
                D   +SS+I   S   KV +A  ++ +M++ G  P L +   L++   +  R ++
Sbjct: 910 SYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEE 969

Query: 465 VVR 467
            ++
Sbjct: 970 ALQ 972



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 119/291 (40%), Gaps = 51/291 (17%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-----------SC---A 210
           V+ Y   +  + K R +  A  LF+ ML  G  P+ VT++ LI           +C   A
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 211 RMN---NLPN----------------------------------KAVEWFERMPSFGCDP 233
           RM    ++P+                                  +A +  + M   GC+P
Sbjct: 610 RMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEP 669

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           + + Y ++ID + + G ++ A  ++ +     +  +   +S+LI         D  L V 
Sbjct: 670 NHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVL 729

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
             M      PN+I Y  ++D + +  +  +   +   M + G  PN  TY +++  +G+A
Sbjct: 730 SRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKA 789

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
              +  L + R+M  KG   +   Y  L+  C   G  D+A ++ ++MK +
Sbjct: 790 GKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQT 840



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 125/307 (40%), Gaps = 20/307 (6%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           D G KP  +T++ L+      +  + A      M   G + D  T    +    +AG   
Sbjct: 225 DLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWR 284

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  L ++   E++++D   ++ +I     A  F+  ++    M++    PN++TY  LL
Sbjct: 285 EALALIEK---EEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL 341

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
               R ++  + K I   M   G  P+   + SL+ AY R+        + ++M + G Q
Sbjct: 342 CGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQ 401

Query: 373 LSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI-----CSC-RG 425
               +YN L+  +C +      + ++ E  + +     D+    + + +     C C  G
Sbjct: 402 PGYVVYNILIGGICGNEKLP--SLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAG 459

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----- 480
           K  +A ++  EM+  GF P+    + +I     A + D+       +    + PD     
Sbjct: 460 KFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYT 519

Query: 481 ---DRFC 484
              D FC
Sbjct: 520 ILIDSFC 526



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/274 (20%), Positives = 119/274 (43%), Gaps = 6/274 (2%)

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           ++S  +   L  K   W  R   +G       Y ++++  G  GN  +        R+E 
Sbjct: 135 VLSLVKNPELGVKFFIWAGRQIGYG--HTGPVYHALLEVLGCGGNDRVPEQFLREIRDED 192

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
             I     + LI+     G ++  L     +K +G KP+ +TYN L+     A R     
Sbjct: 193 KEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAY 252

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            +++EM+D+G + +  T    +    +A    + L++   ++++  +L   +Y  +++  
Sbjct: 253 LVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALAL---IEKEEFKLDTVIYTQMISGL 309

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            +    +EA +    M+SS +C P+  T+  ++  C  + ++   + + + M+  G  P+
Sbjct: 310 CEASLFEEAMDFLSRMRSS-SCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPS 368

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             +  SLI  Y ++       + L ++ + G  P
Sbjct: 369 RRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQP 402



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 114/252 (45%), Gaps = 6/252 (2%)

Query: 150 LALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           LAL   +  L+ S    VI+Y   +    K    D+A RL   M ++G  P+ VT++ +I
Sbjct: 724 LALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMI 783

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                    +K +E   +M + GC P+ +TY  +I+    AG ++ A  L D  +   W 
Sbjct: 784 DGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWP 843

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                +  +I+  G    F   L + +E+      P +  Y  L+D+  +A R      +
Sbjct: 844 KHMAGYRKVIE--GFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALEL 901

Query: 328 YKEMTD--NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
           +KEM+   +  + + + Y+SL+ +   A   +    +Y +M ++G    ++++  L+   
Sbjct: 902 HKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGL 961

Query: 386 ADVGYTDEAFEI 397
             +   +EA ++
Sbjct: 962 IRINRWEEALQL 973


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 151/327 (46%), Gaps = 17/327 (5%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y + +  F K   L +A + FD+M+  G  P+ VT++ LI         + A E F
Sbjct: 514 DVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELF 573

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK--------WRI------D 269
           E M S GC P+ +TY+++ID + ++G +E A  +Y R R           ++I      D
Sbjct: 574 EMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRD 633

Query: 270 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
           PN F+   L+     A       ++ + M   G +PN I Y+ L+D   +  +  + + +
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           + +M++ G  PN  TY+SL+    + +  +  L V   M E     +V +Y  ++     
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           VG TDEA+ +   M   + C P+  T+++MI      GKV +   +  +M   G  PN  
Sbjct: 754 VGKTDEAYRLMS-MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFV 812

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPE 474
               LI     A   DD  + L+ + +
Sbjct: 813 TYRVLINHCCAAGLLDDAHQLLDEMKQ 839



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 144/316 (45%), Gaps = 17/316 (5%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +D A  LF++M    V PD  T++ LI       L  +A +WF+ M   GC P+ +TY++
Sbjct: 496 VDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTA 555

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I AY +A  +  A  L++   +E    +   ++ LI  +  +G  +    +Y  M+   
Sbjct: 556 LIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNA 615

Query: 301 ----------------VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                             PN+ TY  L+D + +A +  + + +   M+  G  PN   Y 
Sbjct: 616 DIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYD 675

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+  + +    ++   V+ +M E+G   +V  Y++L+         D A ++   M  +
Sbjct: 676 ALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLEN 735

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            +C P+   ++ MI      GK  EA  + + M E G  PN+   T++I  +GKA + D 
Sbjct: 736 -SCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDK 794

Query: 465 VVRALNRLPELGITPD 480
            +  + ++   G  P+
Sbjct: 795 CLELMRQMGAKGCAPN 810



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 137/316 (43%), Gaps = 17/316 (5%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           L+ AE+ + +MLD  V  + V  S L  C        KA      M S G  PD  TYS 
Sbjct: 426 LELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSK 485

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I     A  V+ AF L++  ++     D   ++ LI  +   G        ++EM   G
Sbjct: 486 VIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG 545

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
             PN++TY  L+    +A++      +++ M   G  PN  TY +L+  + ++   E   
Sbjct: 546 CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKAC 605

Query: 361 SVYREMKEKGMQLSVTL----------------YNTLLAMCADVGYTDEAFEIFEDMKSS 404
            +Y  M+       V +                Y  L+          EA ++  D+ S 
Sbjct: 606 QIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLL-DVMSV 664

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           E C+P+   + ++I      GK+ EA+ +F +M E G+ PN++  +SLI    K +R D 
Sbjct: 665 EGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDL 724

Query: 465 VVRALNRLPELGITPD 480
            ++ L+R+ E    P+
Sbjct: 725 ALKVLSRMLENSCAPN 740



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 156/365 (42%), Gaps = 48/365 (13%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRG-------------------------------- 195
           YN  ++VF +   LD A  +  +M D G                                
Sbjct: 235 YNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEE 294

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
            K D V ++ +IS     +L  +A+++  RM S  C P+ +TY  ++    R   +    
Sbjct: 295 FKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCK 354

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            +      E        F++LI  Y  +G++     + ++M   G +P  + YN L+  +
Sbjct: 355 RILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGI 414

Query: 316 -GRAKRP-----WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            G  K P        +  Y EM D  +  N    ++L R    A   E   S+ REM  K
Sbjct: 415 CGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSK 474

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G     + Y+ ++ +  +    D AF +FE+MKS+ +  PD +T++ +I      G + +
Sbjct: 475 GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSN-HVVPDVFTYTILIDSFCKVGLLQQ 533

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           A   F+EM+  G  PN+   T+LI  Y KA++    + + N L E+ ++      GC+ N
Sbjct: 534 ARKWFDEMVRDGCAPNVVTYTALIHAYLKARK----MSSANELFEMMLSE-----GCIPN 584

Query: 490 VMTQT 494
           V+T T
Sbjct: 585 VVTYT 589



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 130/298 (43%), Gaps = 3/298 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y+  +  F K   LD+A+ +F  M +RG  P+  T+S+LI     +   + A++   R
Sbjct: 672 IVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSR 731

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M    C P+ + Y+ MID   + G  + A+ L      +    +   ++ +I  +G AG 
Sbjct: 732 MLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGK 791

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D CL +  +M A G  PN +TY  L++    A        +  EM       +   Y  
Sbjct: 792 VDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRK 851

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS-S 404
           ++  + R      +L +  E+ E      +  Y  L+      G  + A E+ + M S +
Sbjct: 852 VIEGFNREFI--ISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKXMSSCT 909

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
                D   +SS+I   S   KV +A  ++ +M++ G  P L +   L++   +  RT
Sbjct: 910 SYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRT 967



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 119/291 (40%), Gaps = 51/291 (17%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-----------SC---A 210
           V+ Y   +  + K R +  A  LF+ ML  G  P+ VT++ LI           +C   A
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 211 RMN---NLPN----------------------------------KAVEWFERMPSFGCDP 233
           RM    ++P+                                  +A +  + M   GC+P
Sbjct: 610 RMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEP 669

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           + + Y ++ID + + G ++ A  ++ +     +  +   +S+LI         D  L V 
Sbjct: 670 NHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVL 729

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
             M      PN+I Y  ++D + +  +  +   +   M + G  PN  TY +++  +G+A
Sbjct: 730 SRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKA 789

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
              +  L + R+M  KG   +   Y  L+  C   G  D+A ++ ++MK +
Sbjct: 790 GKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQT 840



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 125/307 (40%), Gaps = 20/307 (6%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           D G KP  +T++ L+      +  + A      M   G + D  T    +    +AG   
Sbjct: 225 DLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWR 284

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  L ++   E++++D   ++ +I     A  F+  ++    M++    PN++TY  LL
Sbjct: 285 EALALIEK---EEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL 341

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
               R ++  + K I   M   G  P+   + SL+ AY R+        + ++M + G Q
Sbjct: 342 CGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQ 401

Query: 373 LSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI-----CSC-RG 425
               +YN L+  +C +      + ++ E  + +     D+    + + +     C C  G
Sbjct: 402 PGYVVYNILIGGICGNEKLP--SLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAG 459

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----- 480
           K  +A ++  EM+  GF P+    + +I     A + D+       +    + PD     
Sbjct: 460 KFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYT 519

Query: 481 ---DRFC 484
              D FC
Sbjct: 520 ILIDSFC 526



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/274 (20%), Positives = 119/274 (43%), Gaps = 6/274 (2%)

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           ++S  +   L  K   W  R   +G       Y ++++  G  GN  +        R+E 
Sbjct: 135 VLSLVKNPELGVKFFIWAGRQIGYG--HTGPVYHALLEVLGCGGNDRVPEQFLREIRDED 192

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
             I     + LI+     G ++  L     +K +G KP+ +TYN L+     A R     
Sbjct: 193 KEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAY 252

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            +++EM+D+G + +  T    +    +A    + L++   ++++  +L   +Y  +++  
Sbjct: 253 LVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALAL---IEKEEFKLDTVIYTQMISGL 309

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            +    +EA +    M+SS +C P+  T+  ++  C  + ++   + + + M+  G  P+
Sbjct: 310 CEASLFEEAMDFLSRMRSS-SCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPS 368

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             +  SLI  Y ++       + L ++ + G  P
Sbjct: 369 RRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQP 402



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 106/235 (45%), Gaps = 8/235 (3%)

Query: 150 LALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           LAL   +  L+ S    VI+Y   +    K    D+A RL   M ++G  P+ VT++ +I
Sbjct: 724 LALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMI 783

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                    +K +E   +M + GC P+ +TY  +I+    AG ++ A  L D  +   W 
Sbjct: 784 DGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWP 843

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                +  +I+  G    F   L + +E+      P +  Y  L+D+  +A R      +
Sbjct: 844 KHMAGYRKVIE--GFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALEL 901

Query: 328 YKEMTD--NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM--QLSVTLY 378
           +K M+   +  + + + Y+SL+ +   A   +    +Y +M ++G   +LS+  Y
Sbjct: 902 HKXMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFY 956


>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 855

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 154/330 (46%), Gaps = 4/330 (1%)

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           N    W +   ++    D   Y+ MI  + R    + A GL+   +  + + D   ++ L
Sbjct: 134 NLVFSWMKNQKNYCARTD--IYNMMIRLHARHNRTDQARGLFFEMQKCRCKPDAETYNAL 191

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           I  +G AG +   +N+ ++M    + P+  TYNNL++  G +    +   + K+MTDNG+
Sbjct: 192 INAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGV 251

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            P+  T+  +L A+         LS +  +K   ++   T +N ++     +   D+A +
Sbjct: 252 GPDLVTHNIMLTAFKSGTQYSKALSYFELIKGTHIRPDTTTHNIIIHCLVKLKQYDKAVD 311

Query: 397 IFEDMKSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           IF  MK  ++ C PD  TF+SMI + S  G +   EA FN ML  G +PN+    +L+  
Sbjct: 312 IFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNALLGA 371

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVECVEKSNSKLG 514
           Y      ++ ++  N + + G  PD      LLN   ++ K +  + + + ++++N K  
Sbjct: 372 YAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPN 431

Query: 515 YVVKLLLEEQDIEGDFKKEATELFNSISKD 544
            V    L +        ++A E+   + +D
Sbjct: 432 IVSYNALIDAYGSNGLLEDAIEILREMEQD 461



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 155/334 (46%), Gaps = 5/334 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   + ++  C  ++  E  F+ ML  G+KP+ V+++ L+       + N+A++ F
Sbjct: 326 DVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVF 385

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             +   G  PD ++Y+S+++AYGR+   + A  ++   +    + +  +++ LI  YG+ 
Sbjct: 386 NEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSN 445

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +  + +  EM+   + PN+++   LL   GR  +  ++ T+       G+  N   Y
Sbjct: 446 GLLEDAIEILREMEQDKIHPNVVSICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAY 505

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S + +Y      +  + +Y  M++K ++     Y  L++ C  +    EA    E+M  
Sbjct: 506 NSAIGSYINVGEYDKAIDLYNSMRKKKIKSDSVTYTVLISGCCKMSKFGEALSFMEEMMH 565

Query: 404 SENCQPDSWTFSSMITI----CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
            +        +SS+I       S  G++ EAE+ FN M   G  P++   T+++  Y  A
Sbjct: 566 LK-LPMSKEVYSSIICAYSKQASALGQIIEAESTFNLMKSLGCSPDVVTYTAMLDAYNAA 624

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           ++ + +      + E  +  D   C  L+    +
Sbjct: 625 EKWEKLYALFEEMEENDVKLDTIACAALMRAFNK 658



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 96/460 (20%), Positives = 197/460 (42%), Gaps = 43/460 (9%)

Query: 150 LALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC 209
           L  ++  N+        +YN+ +++  +    D+A  LF +M     KPD  T++ LI  
Sbjct: 135 LVFSWMKNQKNYCARTDIYNMMIRLHARHNRTDQARGLFFEMQKCRCKPDAETYNALI-- 192

Query: 210 ARMNNLPNKAVEW------FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
               N   +A +W       + M      P   TY+++I+A G +GN + A  +  +  +
Sbjct: 193 ----NAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTD 248

Query: 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
                D    + ++  + +   +   L+ +E +K   ++P+  T+N ++  + + K+  +
Sbjct: 249 NGVGPDLVTHNIMLTAFKSGTQYSKALSYFELIKGTHIRPDTTTHNIIIHCLVKLKQYDK 308

Query: 324 VKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
              I+  M +      P+  T+ S++  Y    + E+  + +  M  +G++ ++  YN L
Sbjct: 309 AVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNAL 368

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           L   A  G  +EA ++F ++K +   +PD  +++S++       K  +A  +F  +    
Sbjct: 369 LGAYAARGMENEALQVFNEIKQN-GFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNN 427

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD----------RFCGCLLNVM 491
            +PN+    +LI  YG     +D +  L  + +  I P+             CG  + + 
Sbjct: 428 LKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVVSICTLLAACGRCGQKVKID 487

Query: 492 TQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKA--- 548
           T     E+  +       NS +G  + +        G++ K A +L+NS+ K   K+   
Sbjct: 488 TVLSAAEMRGIKLNTVAYNSAIGSYINV--------GEYDK-AIDLYNSMRKKKIKSDSV 538

Query: 549 YCNCLIDLCVNLNLLENACKLLE------LGLTLEVYTDI 582
               LI  C  ++    A   +E      L ++ EVY+ I
Sbjct: 539 TYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSI 578



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 131/290 (45%), Gaps = 34/290 (11%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFE 224
           + YN  +  +    + DKA  L++ M  + +K D+VT++ LIS C +M+    +A+ + E
Sbjct: 503 VAYNSAIGSYINVGEYDKAIDLYNSMRKKKIKSDSVTYTVLISGCCKMSKF-GEALSFME 561

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M           YSS+I AY +  +                     A   +I+   T  
Sbjct: 562 EMMHLKLPMSKEVYSSIICAYSKQAS---------------------ALGQIIEAEST-- 598

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                   +  MK++G  P+++TY  +LD    A++  ++  +++EM +N +  +    A
Sbjct: 599 --------FNLMKSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEMEENDVKLDTIACA 650

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+RA+ +       LS+ + M+EK + LS T++  +++ C  +     A ++ + M+ S
Sbjct: 651 ALMRAFNKGGQPGRVLSLAQSMREKDIPLSDTIFFEMVSACGLLHDWKTAVDMIKYMEPS 710

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
                 S   +  +      GK+     +F +ML +G E N    + L++
Sbjct: 711 LPV-ISSGCLNLFLNSLGKSGKIEIMLKLFFKMLASGAEVNFNTYSILLK 759


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 172/379 (45%), Gaps = 37/379 (9%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  V  Y+V M  F K RD+D    L ++M  RGVKP+  +++  I         ++A  
Sbjct: 203 SPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYH 262

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
              +M   GC PD +T++ +I     AG +  A  ++ + +    + D   + TL+   G
Sbjct: 263 ILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCG 322

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            +G+    + V+  M A G   N+++Y  ++D + +  R  +   ++ EM + G+SP   
Sbjct: 323 DSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQY 382

Query: 342 TYASLLRAYGRA------------------------------RYGEDTLSV-----YREM 366
           +Y SL+  + +A                               YG+   S+     Y  M
Sbjct: 383 SYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHM 442

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           K KG+   V   N +L   A  G    A  +F ++K+     PD+ T++ MI  CS   K
Sbjct: 443 KSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAM-GVSPDTITYTMMIKCCSKASK 501

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
             EA   F++M+E+G  P++  L SLI    K  + ++  +  ++L E+ I P +     
Sbjct: 502 ADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEPTNGTYNT 561

Query: 487 LLNVMTQTPK-EELGKLVE 504
           LL+ + +  K +E+ +L+E
Sbjct: 562 LLSGLGREGKVKEVMQLLE 580



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 157/331 (47%), Gaps = 24/331 (7%)

Query: 99   YNSLVKLAADLDSCSATEDDVFSVLRCLG---DDFLEQDCVIILNNMTNPDTAALALTYF 155
            YNSL++   D +     ED +F+ ++ LG   D+F      +IL+ M             
Sbjct: 769  YNSLIRGLVDENLIDIAED-LFTEMKRLGCGPDEFTYN---LILDAMGKS-------MRV 817

Query: 156  TNKLKASKEV---------ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
               LK  KE+         + YN  +    K + L++A  L+ +++  G  P   T+  L
Sbjct: 818  EEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPL 877

Query: 207  ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
            +     +     A   F  M  +GC+P+   Y+ +++ +  AGN E    L+++   +  
Sbjct: 878  LDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGI 937

Query: 267  RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
              D  +++ LI    TAG  +  L  + ++  +G++P++I YN L+D +G+++R  +  +
Sbjct: 938  NPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVS 997

Query: 327  IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
            ++ EM   G+ PN  TY SL+   G+A    +   +Y E+  KG + SV  YN L+   +
Sbjct: 998  LFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYS 1057

Query: 387  DVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
              G TD A+  +  M     CQP+S T+  +
Sbjct: 1058 VSGSTDNAYAAYGQMIVG-GCQPNSSTYMQL 1087



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 156/316 (49%), Gaps = 2/316 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ Y   +    +   +D+A  +FD+M ++G+ P+  ++++LIS     ++ ++A+E F 
Sbjct: 346 IVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFN 405

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M + G  P+  T+   I+ YG++G    A   Y+  +++    D  A + ++     +G
Sbjct: 406 HMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSG 465

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  V+ E+KA+GV P+ ITY  ++    +A +  +    + +M ++G  P+     
Sbjct: 466 RLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALN 525

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL+    +   G +   ++ ++KE  ++ +   YNTLL+     G   E  ++ E+M  +
Sbjct: 526 SLIDTLYKGGKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRT 585

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               P+  T+++++   S  G+V+ A  M   M E G  P+L    +++    K +R ++
Sbjct: 586 IY-PPNLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEE 644

Query: 465 VVRALNRLPELGITPD 480
             R   ++ ++ + PD
Sbjct: 645 AFRMFCQMKKI-LAPD 659



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 132/298 (44%), Gaps = 36/298 (12%)

Query: 183  KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
            +A +LF+     GV     ++++LI      NL + A + F  M   GC PD  TY+ ++
Sbjct: 749  EAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLIL 808

Query: 243  DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            DA G++  VE                                     L V +EM   G +
Sbjct: 809  DAMGKSMRVEEM-----------------------------------LKVQKEMHRKGYE 833

Query: 303  PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
               +TYN ++  + ++KR  Q   +Y  +   G SP   TY  LL    ++    D  ++
Sbjct: 834  STYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENL 893

Query: 363  YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
            + EM E G + + T+YN LL      G T+   ++FE M   +   PD  +++ +I    
Sbjct: 894  FNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKM-VEQGINPDIKSYTILIDTLC 952

Query: 423  CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              G++++    F ++ E G EP+L V   LI   GK++R ++ V   N + + GI P+
Sbjct: 953  TAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPN 1010



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 145/300 (48%), Gaps = 1/300 (0%)

Query: 181  LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
            +D AE LF +M   G  PD  T++ ++     +    + ++  + M   G +   +TY++
Sbjct: 782  IDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNT 841

Query: 241  MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
            +I    ++  +E A  LY    +E +   P  +  L+     +G      N++ EM   G
Sbjct: 842  IISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYG 901

Query: 301  VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
             +PN   YN LL+    A     V  ++++M + G++P+  +Y  L+     A    D L
Sbjct: 902  CEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGL 961

Query: 361  SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
              +R++ E G++  + +YN L+         +EA  +F +MK  +   P+ +T++S+I  
Sbjct: 962  CYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKK-KGIIPNLYTYNSLILH 1020

Query: 421  CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
                GK +EA  M+ E+L  G++P++F   +LI+ Y  +  TD+   A  ++   G  P+
Sbjct: 1021 LGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQMIVGGCQPN 1080



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 136/292 (46%), Gaps = 5/292 (1%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           M + G+  +  T++ LI     +    +A+E ++ M   G  P   TYS ++ A+G+  +
Sbjct: 162 MREAGMSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRD 221

Query: 251 VEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           V+    L +    E   + PN +S    I++ G A  FD   ++  +M+  G KP+++T+
Sbjct: 222 VDTVLWLLNEM--EARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTH 279

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
             ++  +  A R    K ++ +M  +   P+  TY +LL   G +   +  + V+  M  
Sbjct: 280 TVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVA 339

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G   ++  Y  ++     VG  DEA  +F++MK  +   P+ ++++S+I+         
Sbjct: 340 DGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMK-EKGMSPEQYSYNSLISGFLKADMFD 398

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            A  +FN M   G  PN +     I  YGK+ ++   ++    +   GI PD
Sbjct: 399 RALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPD 450



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 179/400 (44%), Gaps = 10/400 (2%)

Query: 149  ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
            A+ + Y   +   + ++  YN  M    K   L++A R+F  M  + + PD  T  T++ 
Sbjct: 610  AIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQM-KKILAPDYATLCTILP 668

Query: 209  CARMNNLPNKAVEWF-ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                N L  +A+    E +   GC+ D  ++ S+++   +   VE +    +   +    
Sbjct: 669  SFVKNGLMKEALHTVKEYILKAGCNVDKSSFHSLMEGILKKAGVEKSIEFAENIASRGIL 728

Query: 268  IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            ++      LI+             ++ + K +GV     +YN+L+  +         + +
Sbjct: 729  LNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDL 788

Query: 328  YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            + EM   G  P+  TY  +L A G++   E+ L V +EM  KG + +   YNT+++    
Sbjct: 789  FTEMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVK 848

Query: 388  VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
                ++A +++ ++ S E   P   T+  ++      GK+ +AE +FNEMLE G EPN  
Sbjct: 849  SKRLEQAIDLYYNLMS-EGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCT 907

Query: 448  VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
            +   L+  +  A  T++V +   ++ E GI PD +    L++ +    +   G    C  
Sbjct: 908  IYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGL---CYF 964

Query: 508  KSNSKLGYVVKLLLEEQDIEGDFK----KEATELFNSISK 543
            +   +LG    L++    I+G  K    +EA  LFN + K
Sbjct: 965  RQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKK 1004



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 153/333 (45%), Gaps = 11/333 (3%)

Query: 216 PNKAVEWF---ERMPSFGCDPDALTYS-SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
           P +A+E F    R P+     ++  Y   ++ A+GR G++   F   D  + +  + +  
Sbjct: 81  PAEALELFTAAARQPTKVHTTESCNYMLELMRAHGRVGDMAQVF---DLMQKQVVKTNVG 137

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
            F+T+    G  G           M+  G+  N  TYN L+  + ++    +   +YK M
Sbjct: 138 TFATIFGGVGVEGGLRSAPVALPVMREAGMSLNAYTYNGLIYFLVKSGFDAEAMEVYKAM 197

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
            ++G+SP+  TY+ L+ A+G+ R  +  L +  EM+ +G++ +V  Y   + +       
Sbjct: 198 VEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARF 257

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           DEA+ I   M+ S  C+PD  T + +I +    G++S+A+A+F +M  +  +P+     +
Sbjct: 258 DEAYHILGKMEDS-GCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYIT 316

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKLVECVEKS 509
           L+   G +  +  VV   N +   G   +      +++ + Q  +  E L    E  EK 
Sbjct: 317 LLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKG 376

Query: 510 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 542
            S   Y    L+    ++ D    A ELFN ++
Sbjct: 377 MSPEQYSYNSLI-SGFLKADMFDRALELFNHMN 408



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/364 (19%), Positives = 156/364 (42%), Gaps = 8/364 (2%)

Query: 154 YFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
           Y    +  S + I Y + +K   K    D+A   F DM++ G  PD +  ++LI      
Sbjct: 475 YELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKG 534

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
              N+A + F ++     +P   TY++++   GR G V+    L +      +  +   +
Sbjct: 535 GKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITY 594

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           +T++      G  +  +++   M   G  P++ +YN ++  + + +R  +   ++ +M  
Sbjct: 595 NTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQMKK 654

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYRE-MKEKGMQLSVTLYNTLLAMCADVGYTD 392
             L+P++ T  ++L ++ +    ++ L   +E + + G  +  + +++L+         +
Sbjct: 655 I-LAPDYATLCTILPSFVKNGLMKEALHTVKEYILKAGCNVDKSSFHSLMEGILKKAGVE 713

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           ++ E  E++ S      D +    +  +C  + K  EA  +FN+    G         SL
Sbjct: 714 KSIEFAENIASRGILLNDFFLCPLIRHLCKHK-KALEAHQLFNKFKGLGVSLKTGSYNSL 772

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 511
           I+        D        +  LG  PD+     +L+ M ++ + EE+ K    V+K   
Sbjct: 773 IRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEMLK----VQKEMH 828

Query: 512 KLGY 515
           + GY
Sbjct: 829 RKGY 832


>gi|297842914|ref|XP_002889338.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335180|gb|EFH65597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 712

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 170/362 (46%), Gaps = 25/362 (6%)

Query: 91  KEKSYDTRYNSLVKLAADLDSCSATEDDVF-SVLRCLGDDFLEQDCVIILNNMTNPDTAA 149
           + ++ +   N L  +    + C   +D  F S++R  G+  L Q+ V +   M       
Sbjct: 115 RARNLNAARNFLFSIEKRSNGCVKLQDRYFNSLIRSYGNAGLFQESVNLFQTM------- 167

Query: 150 LALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLIS 208
                   K+  S  V+ +N  + +  K      A  +FD+M    GV PD+ TF+TLIS
Sbjct: 168 -------KKMGISPSVLTFNSLLSILLKRGRTGMAHDMFDEMRRTYGVTPDSYTFNTLIS 220

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               N++ ++A   F+ M  + C+PD +TY+++ID   RAG V++A  L +    +   +
Sbjct: 221 GFCKNSMVDQAFTIFKEMELYSCNPDVVTYNTIIDGLCRAGKVKIAHNLLNGMLKKATAV 280

Query: 269 DPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
            PN  +++TL++ Y      D  L V+ EM   G+KPN +TYN L+  +  A R  ++K 
Sbjct: 281 HPNIVSYTTLLRGYCMKQEIDEALLVFHEMLTRGLKPNAVTYNTLIKGLSEAHRYDEIKG 340

Query: 327 -IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            +         SP+  T+  L++A+  A + +  + V++EM    +      Y+ L+   
Sbjct: 341 FLIGGDAFTTFSPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTL 400

Query: 386 ADVGYTDEAFEIFEDMKSSE------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
                 D+A  +F ++   E       C+P +  ++ M       GK  +AE +F ++++
Sbjct: 401 CLRNEFDKAETLFNELFEKEVLLGKNECKPLAAAYNLMFEYLCANGKAKQAEKVFRQLMK 460

Query: 440 AG 441
            G
Sbjct: 461 RG 462



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 136/268 (50%), Gaps = 7/268 (2%)

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA----FGLYD 259
           +T++   R+  +P   + +F+ + + G      ++  M++  GRA N+  A    F +  
Sbjct: 72  TTVLQTLRLIKVPADGLRFFDWVYNKGFSHKEQSFFLMLEFLGRARNLNAARNFLFSIEK 131

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
           R+ N   ++    F++LI+ YG AG F   +N+++ MK +G+ P+++T+N+LL  + +  
Sbjct: 132 RS-NGCVKLQDRYFNSLIRSYGNAGLFQESVNLFQTMKKMGISPSVLTFNSLLSILLKRG 190

Query: 320 RPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
           R      ++ EM    G++P+  T+ +L+  + +    +   ++++EM+       V  Y
Sbjct: 191 RTGMAHDMFDEMRRTYGVTPDSYTFNTLISGFCKNSMVDQAFTIFKEMELYSCNPDVVTY 250

Query: 379 NTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           NT++      G    A  +   M K +    P+  ++++++     + ++ EA  +F+EM
Sbjct: 251 NTIIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRGYCMKQEIDEALLVFHEM 310

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           L  G +PN     +LI+   +A R D++
Sbjct: 311 LTRGLKPNAVTYNTLIKGLSEAHRYDEI 338



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 97/210 (46%), Gaps = 40/210 (19%)

Query: 311 LLDTMGRAKRPWQVKTIY--KEMTDNGLSPNWNTY-ASLLRAYGRARYGEDTLSVYREMK 367
           +L+ +GRA+     +      E   NG     + Y  SL+R+YG A   ++++++++ MK
Sbjct: 109 MLEFLGRARNLNAARNFLFSIEKRSNGCVKLQDRYFNSLIRSYGNAGLFQESVNLFQTMK 168

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICS---- 422
           + G+  SV  +N+LL++    G T  A ++F++M+ +    PDS+TF+++I+  C     
Sbjct: 169 KMGISPSVLTFNSLLSILLKRGRTGMAHDMFDEMRRTYGVTPDSYTFNTLISGFCKNSMV 228

Query: 423 -----------------------------CR-GKVSEAEAMFNEMLE--AGFEPNLFVLT 450
                                        CR GKV  A  + N ML+      PN+   T
Sbjct: 229 DQAFTIFKEMELYSCNPDVVTYNTIIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSYT 288

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +L++ Y   Q  D+ +   + +   G+ P+
Sbjct: 289 TLLRGYCMKQEIDEALLVFHEMLTRGLKPN 318



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 133/335 (39%), Gaps = 48/335 (14%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV----EWF 223
           +N+ +K       LD A ++F +ML+  + PD+ ++S LI    + N  +KA     E F
Sbjct: 358 FNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCLRNEFDKAETLFNELF 417

Query: 224 ERMPSFG---CDPDALTYSSMID---AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           E+    G   C P A  Y+ M +   A G+A   E  F    R   ++   DP+++ TLI
Sbjct: 418 EKEVLLGKNECKPLAAAYNLMFEYLCANGKAKQAEKVF----RQLMKRGAQDPSSYRTLI 473

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
                 G F     +   M      P+  TY  L+D + +           + M  +   
Sbjct: 474 TGLCREGKFKAAYELLVLMLRREFVPDPETYEVLIDGLLKIGEALLAHDTLQRMLRSSYL 533

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P   T+ S+L    + ++  D+  +   M EK ++ ++ L    + +       ++AF I
Sbjct: 534 PVATTFHSVLAELVKRKFANDSFGLLTVMLEKRIRQNIDLSTQAVRLVFSSAQKEKAFLI 593

Query: 398 FE---------------DMKSSENCQPDSWTF-------SSMITICSCRGKV-------- 427
                            D         D+ T        S M+ I +C   +        
Sbjct: 594 VRLLYDNGYLIKMEELLDFLCENRKLLDAHTLVLFCLEKSQMVDIDTCNTIIEGLCKHKR 653

Query: 428 -SEAEAMFNEMLEAGFEPNL---FVLTSLIQCYGK 458
            SEA +++NE++E G    L    VLT+ ++  GK
Sbjct: 654 HSEAFSLYNELVELGNHQQLSCHVVLTNALEAAGK 688


>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
 gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g51965, mitochondrial; Flags: Precursor
 gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
           Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
           thaliana]
 gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
          Length = 650

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 168/342 (49%), Gaps = 19/342 (5%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + ++   +    D+A  LF++M+  G+  + V ++TL+       + +KA++ F RM 
Sbjct: 273 YTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMV 332

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P+  TYS +++     G +    G+ + +   K  +    +S L++     G+  
Sbjct: 333 ETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEIS---KRYMTQGIYSYLVRTLSKLGHVS 389

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++ +M +  VK    +Y ++L+++  A +  +   +  ++ + G+  +   Y ++ 
Sbjct: 390 EAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVF 449

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A G+ +       ++ +MK+ G    +  YN L+A    VG  DEA  IFE+++ S+ C
Sbjct: 450 SALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSD-C 508

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD  +++S+I      G V EA   F EM E G  P++   ++L++C+GK +R +    
Sbjct: 509 KPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVE---M 565

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 509
           A +   E+ +       GC  N++T         L++C+EK+
Sbjct: 566 AYSLFEEMLVK------GCQPNIVTYNI------LLDCLEKN 595



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 186/389 (47%), Gaps = 20/389 (5%)

Query: 99  YNSLV-KLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTN 157
           YN L+  LA D  +C   ED       C  D++      I++  M        A+  F  
Sbjct: 241 YNMLLDALAKDEKACQVFED--MKKRHCRRDEY---TYTIMIRTMGRIGKCDEAVGLFNE 295

Query: 158 KLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC----AR 211
            +    +  V+ YN  M+V  K + +DKA ++F  M++ G +P+  T+S L++      +
Sbjct: 296 MITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQ 355

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
           +  L +  VE  +R  + G       YS ++    + G+V  A  L+    +   + + +
Sbjct: 356 LVRL-DGVVEISKRYMTQG------IYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERD 408

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           ++ ++++    AG     + +  ++   GV  + + YN +   +G+ K+   +  ++++M
Sbjct: 409 SYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKM 468

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
             +G SP+  TY  L+ ++GR    ++ ++++ E++    +  +  YN+L+      G  
Sbjct: 469 KKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDV 528

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           DEA   F++M+  +   PD  T+S+++       +V  A ++F EML  G +PN+     
Sbjct: 529 DEAHVRFKEMQE-KGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNI 587

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPD 480
           L+ C  K  RT + V   +++ + G+TPD
Sbjct: 588 LLDCLEKNGRTAEAVDLYSKMKQQGLTPD 616



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 129/251 (51%), Gaps = 1/251 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y+  ++   K   + +A RLF DM    VK +  ++ +++          +A+E   ++
Sbjct: 374 IYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKI 433

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G   D + Y+++  A G+   +     L+++ + +    D   ++ LI  +G  G  
Sbjct: 434 HEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEV 493

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  +N++EE++    KP++I+YN+L++ +G+     +    +KEM + GL+P+  TY++L
Sbjct: 494 DEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTL 553

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  +G+    E   S++ EM  KG Q ++  YN LL      G T EA +++  MK  + 
Sbjct: 554 MECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMK-QQG 612

Query: 407 CQPDSWTFSSM 417
             PDS T++ +
Sbjct: 613 LTPDSITYTVL 623



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 100/195 (51%), Gaps = 4/195 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + ++YN       K + +     LF+ M   G  PD  T++ LI+        ++A+  F
Sbjct: 441 DTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIF 500

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E +    C PD ++Y+S+I+  G+ G+V+ A   +   + +    D   +STL++ +G  
Sbjct: 501 EELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKT 560

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              +   +++EEM   G +PN++TYN LLD + +  R  +   +Y +M   GL+P+  TY
Sbjct: 561 ERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSITY 620

Query: 344 ASLLR----AYGRAR 354
             L R    ++G++R
Sbjct: 621 TVLERLQSVSHGKSR 635



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 12/228 (5%)

Query: 269 DPNAFSTLIKLYGTAG---NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           DP  ++ +I +   +     FD   ++ + M    V  N+ T N L+   G  +      
Sbjct: 132 DPFLYNRIILILSRSNLPDRFDRVRSILDSMVKSNVHGNISTVNILIGFFGNTEDLQMCL 191

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AM 384
            + K+     L  N  TY  LL+AY R+R       VY E++  G +L +  YN LL A+
Sbjct: 192 RLVKKW---DLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDAL 248

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
             D    ++A ++FEDMK   +C+ D +T++ MI      GK  EA  +FNEM+  G   
Sbjct: 249 AKD----EKACQVFEDMK-KRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTL 303

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           N+    +L+Q   K +  D  ++  +R+ E G  P++     LLN++ 
Sbjct: 304 NVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLV 351



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 136/332 (40%), Gaps = 38/332 (11%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLIS----------CARMNNLPNKAVEWFERMPSFG 230
            D+   + D M+   V  +  T + LI           C R+        +W  +M SF 
Sbjct: 152 FDRVRSILDSMVKSNVHGNISTVNILIGFFGNTEDLQMCLRL------VKKWDLKMNSF- 204

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
                 TY  ++ AY R+ +   AF +Y   R    ++D  A++ L+     A +   C 
Sbjct: 205 ------TYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLD--ALAKDEKAC- 255

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            V+E+MK    + +  TY  ++ TMGR  +  +   ++ EM   GL+ N   Y +L++  
Sbjct: 256 QVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVL 315

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
            + +  +  + V+  M E G + +   Y+ LL +    G       + E  K        
Sbjct: 316 AKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMT---- 371

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
              +S ++   S  G VSEA  +F +M     +       S+++    A +T + +  L+
Sbjct: 372 QGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLS 431

Query: 471 RLPELGITPDDRFCGCLLNVMTQTPKEELGKL 502
           ++ E G+  D         +M  T    LGKL
Sbjct: 432 KIHEKGVVTD--------TMMYNTVFSALGKL 455


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 121/445 (27%), Positives = 196/445 (44%), Gaps = 32/445 (7%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           + +V  Y   +  F K   +++A   FD+M   G  P+ VT++ LI         ++A E
Sbjct: 154 TPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANE 213

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK---------WRI---- 268
            FE M S GC P+ +TY+++ID + +AG  E A  +Y R +N+K         +RI    
Sbjct: 214 IFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSE 273

Query: 269 --DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
             +PN   +  L+     A       ++ E M   G +PN I Y+ L+D   +  +  + 
Sbjct: 274 LKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEA 333

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
           + ++ +M  +G SPN  TY+SL+    + +  +  L V  +M E     +V +Y  ++  
Sbjct: 334 QEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDG 393

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
              VG TDEA+ +   M   + C P+  T+++MI      G+V     +   M   G  P
Sbjct: 394 LCKVGKTDEAYRLML-MMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAP 452

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE---ELGK 501
           N      LI     A   DD   A   L E+  T   +  G    V+     E    LG 
Sbjct: 453 NFITYRVLINHCCAAGLLDD---AHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASLGL 509

Query: 502 LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLN 561
           L E  E  +  +  V KLL++     G  +  A EL   +S     AY N  + L  +L 
Sbjct: 510 LAELSEDGSVPILPVYKLLIDNFIKAGRLEM-ALELHEELS-SFSAAYQNTYVSLIESLT 567

Query: 562 LLENACKLLELGLTLEVYTDIQSRS 586
           L   ACK+ +     ++Y+D+  R 
Sbjct: 568 L---ACKVDK---AFKLYSDMTRRG 586



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 147/338 (43%), Gaps = 24/338 (7%)

Query: 166 ILYNVTMKVFRKCRDLDK------AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           ++YN+ +       DL        AER +++ML+ GV  + V       C        KA
Sbjct: 47  VVYNILIGGICSTEDLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKA 106

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
                 M S G  PD+ TYS +I     A  VE AF L+   +      D   ++TL+  
Sbjct: 107 YNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDR 166

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +   G  +   N ++EM+  G  PN++TY  L+    + ++  +   I++ M  NG  PN
Sbjct: 167 FCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPN 226

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL-----------------SVTLYNTLL 382
             TY +L+  + +A   E    +Y  MK   + +                 +V  Y  L+
Sbjct: 227 IVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALV 286

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
                     EA ++ E M S E C+P+   + ++I      GK+ EA+ +F +ML  G 
Sbjct: 287 DGLCKAHKVKEARDLLETM-SLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGC 345

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            PN++  +SLI    K +R D  ++ L ++ E    P+
Sbjct: 346 SPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPN 383



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 129/289 (44%), Gaps = 4/289 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y+  +  F K   LD+A+ +F  ML  G  P+  T+S+LI     +   + A++   +
Sbjct: 315 IIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTK 374

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M    C P+ + Y+ M+D   + G  + A+ L      +    +   ++ +I  +G AG 
Sbjct: 375 MLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGR 434

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D CL + + M + G  PN ITY  L++    A        + +EM       +   Y  
Sbjct: 435 VDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRK 494

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++  +        +L +  E+ E G    + +Y  L+      G  + A E+ E++ S  
Sbjct: 495 VIEGFSHEFVA--SLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEELSSFS 552

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
               +  T+ S+I   +   KV +A  ++++M   GF P L +L  LI+
Sbjct: 553 AAYQN--TYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSMLVCLIK 599



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 119/256 (46%), Gaps = 13/256 (5%)

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M + GC P  + ++S++ AY R+G+   A+ L  +     ++     ++ LI    +  +
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 286 FDGCLNV------YEEMKAIGV---KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
                 +      Y EM  +GV   K N+  +   L  +G+ ++ + V    +EM   G 
Sbjct: 62  LPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNV---IREMMSKGF 118

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            P+ +TY+ ++     A   E    +++EMK  G+   V  Y TLL     VG  ++A  
Sbjct: 119 IPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARN 178

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
            F++M+  + C P+  T++++I       K+S A  +F  ML  G  PN+   T+LI  +
Sbjct: 179 WFDEMQ-QDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGH 237

Query: 457 GKAQRTDDVVRALNRL 472
            KA  T+   +   R+
Sbjct: 238 CKAGETEKACQIYARM 253



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 15/191 (7%)

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G  P+ + +N+L+    R+   +    + K+M   G  P +  Y  L+   G     ED 
Sbjct: 6   GCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILI---GGICSTEDL 62

Query: 360 LSV---------YREMKEKGMQLS-VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
            S+         Y EM E G+ L+ V + N    +C  +G  ++A+ +  +M  S+   P
Sbjct: 63  PSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCC-IGKFEKAYNVIREM-MSKGFIP 120

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           DS T+S +I       KV +A  +F EM   G  P+++  T+L+  + K    +      
Sbjct: 121 DSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWF 180

Query: 470 NRLPELGITPD 480
           + + + G  P+
Sbjct: 181 DEMQQDGCAPN 191



 Score = 43.5 bits (101), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 27/174 (15%)

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK---GMQLSVTLYNTLL-AMCA 386
           M   G  P+   + SL+ AY R+    D    Y+ +K+    G Q    +YN L+  +C+
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSG---DYFYAYKLLKKMVICGYQPGYVVYNILIGGICS 58

Query: 387 D--------VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
                    +G  + A+    +M    N + +   F+  +    C GK  +A  +  EM+
Sbjct: 59  TEDLPSMEVIGLAERAYNEMLEMGVVLN-KVNVCNFTRCL---CCIGKFEKAYNVIREMM 114

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 484
             GF P+    + +I     A + +   +    +   GITPD        DRFC
Sbjct: 115 SKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFC 168


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 150/336 (44%), Gaps = 35/336 (10%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D+D A  LF++ L +G+KP  V ++TLI       L  KA++    M   G  PD  TY+
Sbjct: 343 DIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYN 402

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +I+   + G V  A  L + A  + +  D   F+TLI  Y      D  + + + M + 
Sbjct: 403 LVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSH 462

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           GV P++ITYN++L+ + +A +P  V   +K + + G  PN  TY  L+ +  +AR   + 
Sbjct: 463 GVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEA 522

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS--------------- 404
           L +  E++ +G+      + T+++   + G  DEA+++F  M+                 
Sbjct: 523 LDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMIN 582

Query: 405 --------------------ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
                               + C PDS+T+  MI      G V+       + +E GF P
Sbjct: 583 AFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVP 642

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +L     +I C     R  + V  ++ +   G+ P+
Sbjct: 643 SLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVVPE 678



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 160/344 (46%), Gaps = 12/344 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  + + +K F + +    A RL ++M  +G + + V + T+IS     N   +A E F
Sbjct: 145 DVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELF 204

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M   G  P   T++ ++    + G+++    L ++    K  + PN F+  I + G  
Sbjct: 205 NKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVL--KNGVCPNLFTFNIFIQGLC 262

Query: 284 --GNFDGC-------LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
             G  +G         N   +M   G++P+  TYN ++    +  +      I K+    
Sbjct: 263 RKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFK 322

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G  P+  TY SL+    +    +  L+++ E   KG++ S+ LYNTL+   +  G   +A
Sbjct: 323 GFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKA 382

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            ++  DM S E   PD WT++ +I      G VS+A  + N  +  G+ P++F   +LI 
Sbjct: 383 LQLMNDM-SKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLID 441

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
            Y K  + D+ +  L+ +   G+TPD      +LN + +  K E
Sbjct: 442 GYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPE 485



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 147/330 (44%), Gaps = 8/330 (2%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CAR--MN 213
           +L     +  +N  M +  K   L + E+L + +L  GV P+  TF+  I   C +  + 
Sbjct: 209 RLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLE 268

Query: 214 NLPNKAVE---WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP 270
              +K VE   +  +M + G +PD  TY+++I  Y + G ++ A  +   A+ + +  D 
Sbjct: 269 GANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDE 328

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
             + +LI      G+ D  L ++EE    G+KP+++ YN L+  + +     +   +  +
Sbjct: 329 FTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMND 388

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           M+  G+SP+  TY  ++    +     D  ++      KG    +  +NTL+        
Sbjct: 389 MSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLK 448

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
            D A  I + M  S    PD  T++S++       K  +    F  ++E G  PN+    
Sbjct: 449 MDNAIGILDSM-WSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYN 507

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            LI+   KA++  + +  L  +   G+ PD
Sbjct: 508 ILIESLCKARKVTEALDLLEEIRNRGLIPD 537



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 13/264 (4%)

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYE 294
            Y S +  YGR G V+ A  +++R   + +  +P+ FS   ++ +    G F+    VY 
Sbjct: 78  VYVSAMRNYGRKGKVQEAVDVFERM--DFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYL 135

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
            MK  G+ P++ T+   + +  R KRP     +   M   G   N   Y +++  +    
Sbjct: 136 RMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEEN 195

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
           Y  +   ++ +M   G+   +  +N L+ +    G+  E  ++   +  +  C P+ +TF
Sbjct: 196 YQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVC-PNLFTF 254

Query: 415 SSMITICSCRG-------KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +  I     +G       KV EAE   ++M+  G EP+ F   ++I  Y K  +  D  R
Sbjct: 255 NIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASR 314

Query: 468 ALNRLPELGITPDD-RFCGCLLNV 490
            L      G  PD+  +C  ++ V
Sbjct: 315 ILKDAKFKGFVPDEFTYCSLIIGV 338



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/321 (20%), Positives = 143/321 (44%), Gaps = 8/321 (2%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y   M+ + +   + +A  +F+ M     +P   +++ +++        N+A + + RM
Sbjct: 78  VYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRM 137

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G  PD  T++  I ++ R      A  L +   ++   ++   + T+I  +      
Sbjct: 138 KHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQ 197

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                ++ +M  +G+ P++ T+N L+  + +     + + +  ++  NG+ PN  T+   
Sbjct: 198 VEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIF 257

Query: 347 LRAYGRARYGEDTLSVYRE-------MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
           ++   R    E   S   E       M  KG++     YNT++   + VG   +A  I +
Sbjct: 258 IQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILK 317

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           D K  +   PD +T+ S+I      G +  A A+F E L  G +P++ +  +LI+   + 
Sbjct: 318 DAK-FKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQ 376

Query: 460 QRTDDVVRALNRLPELGITPD 480
                 ++ +N + + G++PD
Sbjct: 377 GLVLKALQLMNDMSKEGMSPD 397



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 127/318 (39%), Gaps = 53/318 (16%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           CV   NN+ N   AA+A  Y         ++  +N  +  + K   +D A  + D M   
Sbjct: 413 CVSDANNLLN---AAIAKGYLP-------DIFTFNTLIDGYCKRLKMDNAIGILDSMWSH 462

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           GV PD +T++++++       P   +E F+ +   GC P+ +TY+ +I++  +A  V  A
Sbjct: 463 GVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEA 522

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLD 313
             L +  RN     DP +F T+I  +   G+ D    ++  M +   +   + TYN +++
Sbjct: 523 LDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMIN 582

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKG 370
                      + ++ EM D G  P+  TY  ++  +   G    G D L     +KE  
Sbjct: 583 AFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFL-----LKE-- 635

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
                           ++G+                  P   TF  +I     + +V EA
Sbjct: 636 ---------------IEIGFV-----------------PSLTTFGRVINCLCVQHRVHEA 663

Query: 431 EAMFNEMLEAGFEPNLFV 448
             + + M+  G  P   V
Sbjct: 664 VGIVHLMVRTGVVPEAVV 681


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 153/311 (49%), Gaps = 4/311 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V++Y++ +  +     +++A RL D M   GV PD   ++ +ISC        +A  +  
Sbjct: 473 VVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLL 532

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G  PDA+T+ + I  Y + G +  A   +D   +     +   ++ LI  +  AG
Sbjct: 533 EIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAG 592

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N    L+++  + A+GV P++ T +  +  + +  R  +   ++ E+ + GL P+  TY+
Sbjct: 593 NLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYS 652

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL+  + +    E    ++ EM  KG+  ++ +YN L+      G    A ++F+ M   
Sbjct: 653 SLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGM-PE 711

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +  +PDS T+S+MI        V+EA ++F+EM   G +P+ FV  +L+       +  D
Sbjct: 712 KGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVH---GCCKEGD 768

Query: 465 VVRALNRLPEL 475
           + +A+N   E+
Sbjct: 769 MEKAMNLFREM 779



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 183/400 (45%), Gaps = 41/400 (10%)

Query: 119 VFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVF 175
           +F  L  LG     Q C   ++ +        AL  F+ +LK      +V  Y+  +  F
Sbjct: 600 IFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFS-ELKEKGLVPDVFTYSSLISGF 658

Query: 176 RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
            K  +++KA  L D+M  +G+ P+   ++ L+     +    +A + F+ MP  G +PD+
Sbjct: 659 CKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS 718

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           +TYS+MID Y ++ NV  AF L+    ++  +     ++ L+      G+ +  +N++ E
Sbjct: 719 VTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFRE 778

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M   G    + ++N L+D   ++ +  +   +++EM    + P+  TY +++  + +A  
Sbjct: 779 MLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGK 837

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            E+   +++EM+E+ + +    Y +L+     +G + E F +FE M  ++  +PD  T+ 
Sbjct: 838 MEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKM-VAKGVKPDEVTYG 896

Query: 416 -----------------------------------SMITICSCRGKVSEAEAMFNEMLEA 440
                                               +IT    R  ++EA  + +EM E 
Sbjct: 897 LVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGEL 956

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           G +P+L    +L++ + +A + D+  R    +  LG+ PD
Sbjct: 957 GLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPD 996



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 107/457 (23%), Positives = 187/457 (40%), Gaps = 73/457 (15%)

Query: 68  GKTGSSPKSYIW--VNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSAT------EDDV 119
           G+ G  P +Y +  +     RA ++ E            L  D ++CSA       E D+
Sbjct: 290 GEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDI 349

Query: 120 FSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR 179
             VLR + D  +   C I +N                        +I YNV +    K  
Sbjct: 350 DEVLR-IKDVMV--SCGIPIN------------------------LITYNVLIHGLCKFG 382

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTY 238
            ++KA  +   M+  G KP++ TF  LI    R +N+  +A+E  + M      P A++Y
Sbjct: 383 KMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNM-GRALELLDEMEKRNLVPSAVSY 441

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
            +MI+      ++ +A  L ++      + +   +S LI  Y + G  +    + + M  
Sbjct: 442 GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSC 501

Query: 299 IGVKPNMITYNN-----------------LLDTMGRAKRPWQV----------------- 324
            GV P++  YN                  LL+  GR  +P  V                 
Sbjct: 502 SGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTE 561

Query: 325 -KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
               + EM D+GL PN   Y  L+  + +A    + LS++R +   G+   V   +  + 
Sbjct: 562 AAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIH 621

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
                G   EA ++F ++K  +   PD +T+SS+I+    +G+V +A  + +EM   G  
Sbjct: 622 GLLKNGRVQEALKVFSELK-EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIA 680

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           PN+F+  +L+    K+       +  + +PE G+ PD
Sbjct: 681 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPD 717



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 140/312 (44%), Gaps = 1/312 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +     C+DL  A +L + M   G+KP+ V +S LI          +A    + M 
Sbjct: 441 YGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMS 500

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD   Y+++I    +AG +E A       +    + D   F   I  Y   G   
Sbjct: 501 CSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMT 560

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
                ++EM   G+ PN   Y  L++   +A    +  +I++ +   G+ P+  T ++ +
Sbjct: 561 EAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFI 620

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +    ++ L V+ E+KEKG+   V  Y++L++     G  ++AFE+ ++M   +  
Sbjct: 621 HGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEM-CLKGI 679

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+ + +++++      G +  A  +F+ M E G EP+    +++I  Y K++   +   
Sbjct: 680 APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFS 739

Query: 468 ALNRLPELGITP 479
             + +P  G+ P
Sbjct: 740 LFHEMPSKGVQP 751



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 150/340 (44%), Gaps = 7/340 (2%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K   +V  Y   +    K  DL  A+R+  +M ++G+ P+   +S +I         ++A
Sbjct: 223 KMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEA 282

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           VE    M   G  P+  TY+ +     RA  +  A   ++  +    + D NA S LI  
Sbjct: 283 VELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDG 342

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +   G+ D  L + + M + G+  N+ITYN L+  + +  +  +   I K M   G  PN
Sbjct: 343 FMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPN 402

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL---LAMCADVGYTDEAFE 396
             T+  L+  Y R       L +  EM+++ +  S   Y  +   L  C D+   +   +
Sbjct: 403 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN---K 459

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           + E M  S   +P+   +S +I   +  G++ EA  + + M  +G  P++F   ++I C 
Sbjct: 460 LLEKMTFS-GLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 518

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
            KA + ++    L  +   G+ PD    G  +   ++T K
Sbjct: 519 SKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGK 558



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 99/212 (46%), Gaps = 9/212 (4%)

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQVKT 326
           P  F  LI  Y   G  D   NV+   K   +  ++I  N+LL  +   G  +  W+V  
Sbjct: 158 PVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKV-- 215

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
            Y  M D  +  +  TY  L+ A  +         V  EM EKG+  +  +Y+ ++    
Sbjct: 216 -YNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMC 274

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPN 445
            VG  DEA E+   M   +   P+++T+ ++IT   CR K ++EA+  F EM + G +P+
Sbjct: 275 QVGDIDEAVELKRSM-GEKGLVPNTYTY-TIITAGLCRAKRMNEAKLTFEEMQKTGLKPD 332

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
               ++LI  + +    D+V+R  + +   GI
Sbjct: 333 YNACSALIDGFMREGDIDEVLRIKDVMVSCGI 364



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 111/264 (42%), Gaps = 6/264 (2%)

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
           WF      G  P  + +  +ID+Y R G ++ A  ++  A+N+   I     ++L+K   
Sbjct: 149 WFRNYG--GSSP--VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLL 204

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G  +    VY  M    +  ++ TY  L+  + +       K +  EM + GL+PN  
Sbjct: 205 KCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEF 264

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            Y+ ++    +    ++ + + R M EKG+  +   Y  + A        +EA   FE+M
Sbjct: 265 IYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEM 324

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           + +   +PD    S++I      G + E   + + M+  G   NL     LI    K  +
Sbjct: 325 QKT-GLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGK 383

Query: 462 TDDVVRALNRLPELGITPDDR-FC 484
            +     L  +  LG  P+ R FC
Sbjct: 384 MEKAAEILKGMVTLGCKPNSRTFC 407



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 84/190 (44%)

Query: 177  KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
            K   +++A  LF +M +R +  D VT+++L+         ++    FE+M + G  PD +
Sbjct: 834  KAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEV 893

Query: 237  TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            TY  +I A+ +  N+  AF L D    +           LI       +      + +EM
Sbjct: 894  TYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEM 953

Query: 297  KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
              +G+KP++   N L+ +   A +  +   +++ +   GL P+  T   L+         
Sbjct: 954  GELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDS 1013

Query: 357  EDTLSVYREM 366
            ED  ++ +++
Sbjct: 1014 EDARNLIKQL 1023


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 178/368 (48%), Gaps = 14/368 (3%)

Query: 123 LRCLGDDFLEQDCVIILNNMT--NPDTAALALTYFTNKLK---ASKEVILYNVTMKVFRK 177
           L C+ D F    C I+L  +   N    AL L +     +   ++ +V+ Y   +  F K
Sbjct: 152 LSCMPDVF---SCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFK 208

Query: 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
             D  KA   + +MLDR + PD VT+S++I+        +KA+E    M   G  P+  T
Sbjct: 209 EGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRT 268

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWR---IDPN--AFSTLIKLYGTAGNFDGCLNV 292
           Y+S++  Y  +G  + A G   + R++      ++P+   + TL++ Y T G   G   +
Sbjct: 269 YTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHAL 328

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
            + M   G+ P+   YN L+    +  +  +   ++ +M   GL+P+  TY +++    +
Sbjct: 329 LDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCK 388

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
           +   ED +  + +M ++G+     +YN+L+         + A E+  +M     C  ++ 
Sbjct: 389 SGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL-NTI 447

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
            F+S+I      G+V E+E +F+ M+  G +P++   ++LI  Y  A + D+ ++ L+ +
Sbjct: 448 FFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGM 507

Query: 473 PELGITPD 480
             +G+ P+
Sbjct: 508 VSVGLKPN 515



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 158/347 (45%), Gaps = 6/347 (1%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           + S +V+ Y+  +    K + +DKA  +   M+  GV P+  T+++++     +  P +A
Sbjct: 226 RISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEA 285

Query: 220 VEWFERMPSFGCDPDAL-----TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
           + + +++ S G +PD L     TY +++  Y   G +     L D         D   ++
Sbjct: 286 IGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYN 345

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            LI  Y   G  D  + V+ +M+  G+ P+ +TY  ++  + ++ R       +++M D 
Sbjct: 346 ILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDE 405

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           GLSP    Y SL+         E    +  EM ++G+ L+   +N+++      G   E+
Sbjct: 406 GLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIES 465

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            ++F D+      +PD  T+S++I      GK+ EA  + + M+  G +PN     +LI 
Sbjct: 466 EKLF-DLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLIN 524

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
            Y K  R  D +     +   G++PD      +L  + QT +    K
Sbjct: 525 GYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 571



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 135/282 (47%), Gaps = 1/282 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + Y   + +  K   ++ A   F+ M+D G+ P N+ +++LI      N   +A E  
Sbjct: 375 DAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 434

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G   + + ++S+ID++ + G V  +  L+D       + D   +STLI  Y  A
Sbjct: 435 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 494

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D  + +   M ++G+KPN +TY  L++   +  R      ++KEM  +G+SP+  TY
Sbjct: 495 GKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITY 554

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             +L+   + R       +Y  + E G Q+ ++ YN +L        TD+A  +F+++  
Sbjct: 555 NIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNL-C 613

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
             + + ++ TF+ MI      G+  EA+ +F      G  PN
Sbjct: 614 LMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPN 655



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 163/356 (45%), Gaps = 2/356 (0%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           L D M+  G+ PD+  ++ LI         ++A+  F +M   G +PDA+TY ++I    
Sbjct: 328 LLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILC 387

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           ++G VE A   +++  +E        +++LI    T   ++    +  EM   G+  N I
Sbjct: 388 KSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTI 447

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
            +N+++D+  +  R  + + ++  M   G+ P+  TY++L+  Y  A   ++ + +   M
Sbjct: 448 FFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGM 507

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
              G++ +   Y TL+     +    +A  +F++M+SS    PD  T++ ++       +
Sbjct: 508 VSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESS-GVSPDIITYNIILQGLFQTRR 566

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            + A+ ++  + E+G +  L     ++    K + TDD +R    L  + +  + R    
Sbjct: 567 TAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNI 626

Query: 487 LLNVMTQTPKEELGKLVECVEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSI 541
           +++ + +  +    K +     SN  +  Y    L+ E  I     +E  +LF S+
Sbjct: 627 MIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSM 682



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/364 (19%), Positives = 148/364 (40%), Gaps = 49/364 (13%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFS-TLISCARMNNLPNKAVEWFERMPSFGCD---PDALT 237
           + A  +FD++L RG        +  L   AR +  P  AV  + RM   G     P   T
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARHS--PAAAVSRYNRMARAGAGKVTPTVHT 89

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY----GTAGNFDGCLNVY 293
           Y+ +I    RA  +++ F        + +R++   F+ L+K       T+   D  L   
Sbjct: 90  YAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 294 EEMKAI-----------------------------------GVKPNMITYNNLLDTMGRA 318
            E+  +                                   G  P++++Y  +++   + 
Sbjct: 150 TELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKE 209

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
               +  + Y EM D  +SP+  TY+S++ A  + +  +  + V   M + G+  +   Y
Sbjct: 210 GDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTY 269

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSS----ENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
            +++      G   EA    + ++S     +  +PD  T+ +++   + +G +    A+ 
Sbjct: 270 TSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALL 329

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           + M+  G  P+ +V   LI  Y K  + D+ +   +++ + G+ PD    G ++ ++ ++
Sbjct: 330 DLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKS 389

Query: 495 PKEE 498
            + E
Sbjct: 390 GRVE 393


>gi|168052517|ref|XP_001778696.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669911|gb|EDQ56489.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 799

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 188/413 (45%), Gaps = 7/413 (1%)

Query: 134 DCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           +C+I L+        A  L Y     +   +V  YN  M V  +      A ++FDDML 
Sbjct: 91  NCMIWLHARHQRADQARGLFYEMKVWRCKPDVETYNALMNVHGRAGQWRWALQIFDDMLQ 150

Query: 194 --RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
             + + P   +++ LI+    +    KA+E  +RM   G  PD +TY+ ++ A+   G  
Sbjct: 151 APKPIAPSRSSYNNLINACGSSGQWFKALEICKRMTDNGVGPDLMTYNIILSAFKSGGQP 210

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNN 310
             A   YD   ++K  +D  + + ++      G F+  +N+++EM+ + G +P+++T+N 
Sbjct: 211 RHAVAYYDHLISKKVPLDRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNA 270

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           LL       +  + +  +  M   G++P   T+ +LL AY       + L V   + +  
Sbjct: 271 LLHVYALCGQITKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAK 330

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
            +  V  Y++LL      GY ++A E+F+ MK     +P+  TF+ ++   +  GK   A
Sbjct: 331 FEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSR-KPNLVTFNGLMDAYASAGKYERA 389

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLN 489
             + ++M EA  EPN+  + SL     +A+  + V    +      I  +   F   +  
Sbjct: 390 RELLHDMAEARIEPNVVTICSLFAACARARCPEKVRDVFHEAKVRQIALNVPAFNAAITA 449

Query: 490 VMTQTPKEELGKLVECVEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSI 541
            +     +E   L+E +E+ N +  G    LL+      GD+ +EA  L++ +
Sbjct: 450 YIEAGQFDEAKALLEVMEEQNLRPNGVTFLLLINAAGSLGDY-REARTLYDKM 501



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 186/387 (48%), Gaps = 22/387 (5%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKAS---KEVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           IILN +T       A+  F    K +    +V+ +N  + V+  C  + KA+  FD M+ 
Sbjct: 234 IILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDMMIG 293

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
            G+ P  VTF+TL+       +  +A++    +     +PD ++YSS+++A+G+AG  E 
Sbjct: 294 EGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEK 353

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  ++D  +    + +   F+ L+  Y +AG ++    +  +M    ++PN++T  +L  
Sbjct: 354 AQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARIEPNVVTICSLFA 413

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
              RA+ P +V+ ++ E     ++ N   + + + AY  A   ++  ++   M+E+ ++ 
Sbjct: 414 ACARARCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIEAGQFDEAKALLEVMEEQNLRP 473

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMK------SSENCQPDSWTFSSMITICSCRGKV 427
           +   +  L+     +G   EA  +++ M       + E C       S++I   +  G  
Sbjct: 474 NGVTFLLLINAAGSLGDYREARTLYDKMVDLGIPLTVEPC-------SALINAFAKHGMY 526

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
           +EA  +F++M +AG + N+   TSL+  Y   +  DD   A   +   GITPD    G L
Sbjct: 527 NEARTIFDDMRKAGCKANVVTYTSLMIAY---RMYDDAQLACEEMVAAGITPDSIAFGTL 583

Query: 488 LNVMTQTPKEELGKLVECVEKSNSKLG 514
              + +  + E  K+++ +EKS+   G
Sbjct: 584 FVALNKANRSE--KVLQ-IEKSSRARG 607



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 154/330 (46%), Gaps = 7/330 (2%)

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +   W +    +    D   Y+ MI  + R    + A GL+   +  + + D   ++ L+
Sbjct: 72  RVFNWMKNQKCYRARTD--IYNCMIWLHARHQRADQARGLFYEMKVWRCKPDVETYNALM 129

Query: 278 KLYGTAGNFDGCLNVYEEMKAIG--VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
            ++G AG +   L ++++M      + P+  +YNNL++  G + + ++   I K MTDNG
Sbjct: 130 NVHGRAGQWRWALQIFDDMLQAPKPIAPSRSSYNNLINACGSSGQWFKALEICKRMTDNG 189

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           + P+  TY  +L A+         ++ Y  +  K + L    +N +L     +G  ++A 
Sbjct: 190 VGPDLMTYNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRYSHNIILNCLTKLGRFEDAI 249

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            +F++M+    C+PD  TF++++ + +  G++++A+  F+ M+  G  P +    +L+  
Sbjct: 250 NLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDMMIGEGMAPTIVTFNTLLGA 309

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGY 515
           Y       + ++ +  L +    PD      LLN   +    E  + V  + K  S+   
Sbjct: 310 YASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPN 369

Query: 516 VVKL--LLEEQDIEGDFKKEATELFNSISK 543
           +V    L++     G +++ A EL + +++
Sbjct: 370 LVTFNGLMDAYASAGKYER-ARELLHDMAE 398



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 112/266 (42%), Gaps = 13/266 (4%)

Query: 126 LGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDK 183
           LG     + C  ++N          A T F +  KA     V+ Y   M  +R     D 
Sbjct: 504 LGIPLTVEPCSALINAFAKHGMYNEARTIFDDMRKAGCKANVVTYTSLMIAYRM---YDD 560

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
           A+   ++M+  G+ PD++ F TL       N   K ++  +   + G   D + Y+  + 
Sbjct: 561 AQLACEEMVAAGITPDSIAFGTLFVALNKANRSEKVLQIEKSSRARGILFDDVAYTETLL 620

Query: 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVK 302
           A  R  + E A  LY+  +  + R+       L+   G +G  D    V+ E+ + IG  
Sbjct: 621 ACSRLKDWETALFLYEGMKKRRLRLTNTMVINLLSAVGRSGKLDRLHKVFLELQQQIGFV 680

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P +  YN L+D+  R  +  +   +   +  + L PNW TY  +L    +    E  L +
Sbjct: 681 PTLQMYNILIDSYSRGLKWRKCLEVLGCIKKDILEPNWKTYEPILSCLSQLELWETYLEI 740

Query: 363 YREMKEKGMQ-------LSVTLYNTL 381
           Y E+  +GM+       +SVT Y +L
Sbjct: 741 YGEVLAQGMEPDYNILKISVTAYTSL 766



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 140/337 (41%), Gaps = 3/337 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N  +  + +    D+A+ L + M ++ ++P+ VTF  LI+ A       +A   +++M 
Sbjct: 443 FNAAITAYIEAGQFDEAKALLEVMEEQNLRPNGVTFLLLINAAGSLGDYREARTLYDKMV 502

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G        S++I+A+ + G    A  ++D  R    + +   +++L+  Y     +D
Sbjct: 503 DLGIPLTVEPCSALINAFAKHGMYNEARTIFDDMRKAGCKANVVTYTSLMIAYRM---YD 559

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
                 EEM A G+ P+ I +  L   + +A R  +V  I K     G+  +   Y   L
Sbjct: 560 DAQLACEEMVAAGITPDSIAFGTLFVALNKANRSEKVLQIEKSSRARGILFDDVAYTETL 619

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A  R +  E  L +Y  MK++ ++L+ T+   LL+     G  D   ++F +++     
Sbjct: 620 LACSRLKDWETALFLYEGMKKRRLRLTNTMVINLLSAVGRSGKLDRLHKVFLELQQQIGF 679

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P    ++ +I   S   K  +   +   + +   EPN      ++ C  + +  +  + 
Sbjct: 680 VPTLQMYNILIDSYSRGLKWRKCLEVLGCIKKDILEPNWKTYEPILSCLSQLELWETYLE 739

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVE 504
               +   G+ PD       +   T    EE   L E
Sbjct: 740 IYGEVLAQGMEPDYNILKISVTAYTSLGMEEEASLTE 776


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 162/361 (44%), Gaps = 33/361 (9%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +    K +++D+A+ L D+ +  G  PD VT+S L          ++A E  + M 
Sbjct: 334 YNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMS 393

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P+ +TY+++ID   +A   E A+ L +   +  +  D   ++ ++      G  D
Sbjct: 394 GKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLD 453

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD-------------- 333
             L + E M   G  P++ITY  L++ + R  R  +   I+KEM                
Sbjct: 454 KALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLV 513

Query: 334 NGL------------------SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           NG                   +P  + Y +L+  Y +    ++  +V+ +M  +G   ++
Sbjct: 514 NGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNI 573

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YN ++      G  DEAF   E M S+  C PD  +++ +I       K  EA  + +
Sbjct: 574 KTYNIVMDGLCKHGKVDEAFPFLESMHSA-GCVPDVVSYNIIIDGLFKASKPKEARQVLD 632

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
           +M++AG  P+     +L+  + K +R DD V  L  + + G+ PD+     L++ ++QT 
Sbjct: 633 QMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTN 692

Query: 496 K 496
           +
Sbjct: 693 R 693



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 156/365 (42%), Gaps = 21/365 (5%)

Query: 133 QDCVIILNNMTNPDTAAL---------------ALTYF--TNKLKASKEVILYNVTMKVF 175
           +D + I  N+ +PD  A                AL +    N+ K + +V  YN+ +   
Sbjct: 212 KDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGL 271

Query: 176 RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
            K    DKA  +  +M+DRGV PD VTF++++          +A      M    C P  
Sbjct: 272 CKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSC 331

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
            TY+++I    +  NV+ A  L D   +  +  D   +S L       G  D    + +E
Sbjct: 332 CTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKE 391

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M   G  PN++TYN L+D + +A +  +   + + +  +G  P+  TY  ++    +   
Sbjct: 392 MSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGR 451

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            +  L +   M ++G   SV  Y  L+      G  DEA  IF++M  S++C  D+  + 
Sbjct: 452 LDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEM-VSKDCTADALAYV 510

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           S++       +  EA+ + + +      P + V  +L+  Y K  R D++      +   
Sbjct: 511 SLVNGYCKSSRTKEAQKVVDGIRGT---PYIDVYNALMDGYCKEGRLDEIPNVFEDMACR 567

Query: 476 GITPD 480
           G  P+
Sbjct: 568 GCVPN 572



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 143/342 (41%), Gaps = 32/342 (9%)

Query: 170 VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
           V  +V ++ +D   A   F    DRG K    T +  +     N   ++    FERM   
Sbjct: 95  VVSRVLQRLKDPQTAIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDA 154

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF--- 286
           G  PD+ TY  +I +  +   ++ AF + D+A+   ++ + + ++ L + +   G     
Sbjct: 155 GYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDA 214

Query: 287 ----------------------------DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
                                       DG L   +EM    V P++ TYN L+D + +A
Sbjct: 215 LEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKA 274

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
            +  +   +  EM D G++P+  T+ S++    +A   E   S+   M E+  + S   Y
Sbjct: 275 SKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTY 334

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           NTL++        D A ++ ++  SS    PD  T+S +      RG++ EA  +  EM 
Sbjct: 335 NTLISGLCKQQNVDRAKDLVDEFVSS-GFVPDVVTYSILADGLCKRGRIDEAFELVKEMS 393

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             G  PNL    +LI    KA +T+     L  L   G  PD
Sbjct: 394 GKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPD 435



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 137/312 (43%), Gaps = 5/312 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +K   +   +DKA  + D    RG KP+   ++ L            A+E F  +P
Sbjct: 163 YHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIP 222

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S    PDA+ Y+++I  + R  + + A          K   D   ++ LI     A   D
Sbjct: 223 S----PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTD 278

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +  EM   GV P+ +T+N+++D + +A +  +  ++   M +    P+  TY +L+
Sbjct: 279 KASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLI 338

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               + +  +    +  E    G    V  Y+ L       G  DEAFE+ ++M S + C
Sbjct: 339 SGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEM-SGKGC 397

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+  T++++I       K  +A  +   ++ +GF P++   T ++    K  R D  ++
Sbjct: 398 TPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALK 457

Query: 468 ALNRLPELGITP 479
            +  + + G TP
Sbjct: 458 MVEGMLKRGCTP 469



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 156/363 (42%), Gaps = 26/363 (7%)

Query: 138 ILNNMTNPDTAALALTYFT--------NKLKASKEVI----------LYNVTMKVFRKCR 179
           I   M + D  A AL Y +        ++ K +++V+          +YN  M  + K  
Sbjct: 493 IFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEG 552

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
            LD+   +F+DM  RG  P+  T++ ++     +   ++A  + E M S GC PD ++Y+
Sbjct: 553 RLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYN 612

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +ID   +A   + A  + D+        D   ++TL+  +     FD  + + + M   
Sbjct: 613 IIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKA 672

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGED 358
           GV P+ +TYN L+  + +  R      +  EM  NG +     TY +++    +    + 
Sbjct: 673 GVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQ 732

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            L +   M   G++ +   YN  +      G  DEA  +  +M +      D  +++++I
Sbjct: 733 ALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR----DEVSYTTVI 788

Query: 419 TICSCRG-KVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
            I  C+  ++  A  +  EM+   G          LI  + K +R D+ +  L  + + G
Sbjct: 789 -IGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRG 847

Query: 477 ITP 479
            +P
Sbjct: 848 CSP 850



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 140/321 (43%), Gaps = 8/321 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN+ +    K     +A ++ D M+  G+ PD VT++TL++        + AV   
Sbjct: 607 DVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGIL 666

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL-YDRARNEKWRIDPNAFSTLIKLYGT 282
           + M   G DPD +TY+++I    +   +  A+ L ++  RN         ++T+I     
Sbjct: 667 KNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCK 726

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G     L + + M   GV+ N +TYN  +D + +  R  +  ++  EM       +  +
Sbjct: 727 EGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDT---LRDEVS 783

Query: 343 YASLLRAYGRARYGEDTLSVYREMKE-KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           Y +++    +A   +    + REM   KG+ ++   +N L+         DEA  +   M
Sbjct: 784 YTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLM 843

Query: 402 KSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
                C P   T++ +IT C C+  KV +A  +F+EM   G   +    T LI       
Sbjct: 844 -VQRGCSPSVITYNMVIT-CLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQG 901

Query: 461 RTDDVVRALNRLPELGITPDD 481
           R  + ++ L  +       DD
Sbjct: 902 RGKEALQVLEEMASSDCEIDD 922



 Score = 43.9 bits (102), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 44/93 (47%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L     +   S  VI YN+ +    K   +DKA  LFD+M  RG+   +V+++ LI 
Sbjct: 836 ALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIY 895

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
                    +A++  E M S  C+ D L +  +
Sbjct: 896 GLCGQGRGKEALQVLEEMASSDCEIDDLKWEDV 928


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 152/315 (48%), Gaps = 2/315 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRG-VKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           Y   +  + K   +D+A ++FD+ML +G VKP+ V ++ LI         + A+ + +RM
Sbjct: 558 YGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRM 617

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G      TY+ ++ A    G    A+ L +    +    D   ++ LI  +   GN 
Sbjct: 618 VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNV 677

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              L ++E M   GV+  ++TY  L+  + +  +  +   ++ E    G+ P+   Y +L
Sbjct: 678 KKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 737

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + ++  +   +    +  EM++K +      YNTL+     +G  DEA ++ ++M +   
Sbjct: 738 INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM-TERG 796

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            QPD  T++++I+  S +G V +A  + NEM+  GF P L    +LIQ   K  + DD  
Sbjct: 797 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 856

Query: 467 RALNRLPELGITPDD 481
             +  + E GITPDD
Sbjct: 857 NMVKEMVENGITPDD 871



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 1/236 (0%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A  L ++M  +G+ PD  T++ LI+         KA+E FE M   G     +TY+++I
Sbjct: 644 EAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALI 703

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            A  + G V+    L+D A     R D   ++ LI  + T+GN D    +  EM+   + 
Sbjct: 704 YALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIA 763

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P+ +TYN L+  +    R  + + +  EMT+ G+ P+  TY +L+  Y      +D L +
Sbjct: 764 PDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRI 823

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
             EM  KG   ++  YN L+      G  D+A  + ++M  +    PD  T+ S+I
Sbjct: 824 RNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN-GITPDDSTYISLI 878



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 138/299 (46%), Gaps = 11/299 (3%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LF DM    +     TF+ ++        P +A+E   +MP     P+A+TY+++I  + 
Sbjct: 475 LFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFC 530

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIG-VKP 303
             G V+ A  +  R   E+  I PN ++  T+I  +   G  D  + V++EM   G VKP
Sbjct: 531 SRGRVQAALDIM-REMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKP 589

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKE-MTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
             + YN L+       +      +Y++ M + G++    TY  L+ A      G +   +
Sbjct: 590 EAVMYNALIGGYCDQGK-LDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 648

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
             EM  KG+   V  YN L+      G   +A EIFE+M S    +    T++++I   S
Sbjct: 649 VEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM-SRRGVRATVVTYTALIYALS 707

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
            +G+V E + +F+E +  G  P+L +  +LI  +  +   D     +  + +  I PDD
Sbjct: 708 KKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 766



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 16/259 (6%)

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           L +Y  MK++ +  +  + + LL  +  A        ++ +M    L     T+  +LR 
Sbjct: 442 LRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLRH 497

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
              A      L + R+M       +   YNT++A     G    A +I  +M+      P
Sbjct: 498 LCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAP 553

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           + +T+ ++I+     G+V EA  +F+EML  G  +P   +  +LI  Y    + D  +  
Sbjct: 554 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 613

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG---YVVKLLLEEQ 524
            +R+ E G+         L++ +    +  E  +LVE  E     L    +   +L+   
Sbjct: 614 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVE--EMGGKGLAPDVFTYNILINGH 671

Query: 525 DIEGDFKKEATELFNSISK 543
             EG+ KK A E+F ++S+
Sbjct: 672 CKEGNVKK-ALEIFENMSR 689


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 167/356 (46%), Gaps = 8/356 (2%)

Query: 131 LEQDCVII---LNNMTNPDTAALALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAE 185
           +E  C+++   LN +   D    A+  F   L+  +  +   +N+ ++        +KA 
Sbjct: 167 VEGCCMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAV 226

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM-PSFGCDPDALTYSSMIDA 244
            L   M   G  PD VT++TLI     +N   KA E F+ +  S GC PD +TY+SMI  
Sbjct: 227 ELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISG 286

Query: 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
           Y +AG ++ A  L D             F+ L+  Y  AG       +  +M + G  P+
Sbjct: 287 YCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPD 346

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           ++T+ +L+D   R  +  Q   +++EM   G+ PN  TY+ L+ A  +         +  
Sbjct: 347 VVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLG 406

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           ++  K +     +YN ++      G  +EA  I E+M+  + C+PD  TF+ +I     +
Sbjct: 407 QLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEK-KKCKPDKITFTILIIGHCMK 465

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           G++ EA ++F++M+  G  P+   ++SL+ C  KA    +    LN++   G   D
Sbjct: 466 GRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYH-LNQIAHKGQIND 520



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 161/395 (40%), Gaps = 19/395 (4%)

Query: 102 LVKLAADLDSCSATEDDV-FSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLK 160
           LVK+ + L      + D+ F  L    + F+  + V  L+N  NP        +   KL 
Sbjct: 41  LVKIVSTLFVYRVPDSDLCFCYLSKNLNPFISFEVVKKLDN--NPHIGFRFWEFSRFKLN 98

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKA 219
                  YN+  +   K    D A ++F+ M   G+ P++     L+S  A    L    
Sbjct: 99  IRHSFWTYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCAT 158

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
               +     GC    +  +S+++   +   VE A  L++     +   D   F+ LI+ 
Sbjct: 159 ALLLQSYEVEGC---CMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRG 215

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSP 338
               G  +  + +   M   G  P+++TYN L+    ++    +   ++ ++ + +G SP
Sbjct: 216 LCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSP 275

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  TY S++  Y +A   ++   +  +M   G+  +   +N L+   A  G    A EI 
Sbjct: 276 DVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIR 335

Query: 399 EDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
             M S   C PD  TF+S+I    CR G+V++   ++ EM   G  PN F  + LI    
Sbjct: 336 GKMISF-GCFPDVVTFTSLID-GYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALC 393

Query: 458 KAQRTDDVVRALNRLPELGITPD--------DRFC 484
           K  R       L +L    I P         D FC
Sbjct: 394 KENRLLKARELLGQLASKDIIPQPFMYNPVIDGFC 428


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 169/368 (45%), Gaps = 16/368 (4%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K + +V+ ++  +  F K     +AE L+D+ML R + P  VT+S++I      N  + A
Sbjct: 318 KINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAA 377

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
              F   P+ GC PD +T++++I  Y RA  V+    L           +   ++TLI  
Sbjct: 378 EHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHG 437

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQV-KTIYKEMTD-- 333
           +   G+ +   ++ +EM + GV PN++T N LLD +   G+ K   ++ K + K   D  
Sbjct: 438 FCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDID 497

Query: 334 -----NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
                NG+ P+  TY  L+          +   +Y EM  +G+      Y++++      
Sbjct: 498 ASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 557

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
              DEA ++F+ M  S++  PD  TF+++IT     G V +   +F EM + G   +   
Sbjct: 558 SRLDEATQMFDSM-GSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAIT 616

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT-PKEELGKLVECVE 507
             +LI  + K    D  +     +   G+ PD      + N++T    KEEL + V  +E
Sbjct: 617 YITLIYGFRKVDNIDGALDIFQEMISSGVYPDTI---TIRNMLTGLWSKEELERAVAMLE 673

Query: 508 KSNSKLGY 515
                +GY
Sbjct: 674 DLQMSVGY 681



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 148/328 (45%), Gaps = 12/328 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  +  F        AE+L  +ML+R + PD VTFS LI+         +A E +
Sbjct: 287 DIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELY 346

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M      P  +TYSSMID + +   ++ A  ++     +    D   F+TLI  Y  A
Sbjct: 347 DEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRA 406

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D  + +  EM   G+  N ITY  L+    +       + + +EM  +G+ PN  T 
Sbjct: 407 KRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTC 466

Query: 344 ASLLRAYGRARYGEDTLSVYREMKE-----------KGMQLSVTLYNTLLAMCADVGYTD 392
            +LL         +D L +++ M++            G++  V  YN L+    + G   
Sbjct: 467 NTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFL 526

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           EA E++E+M       PD+ T+SSMI     + ++ EA  MF+ M    F P++    +L
Sbjct: 527 EAEELYEEM-PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTL 585

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPD 480
           I  Y KA   DD +     + + GI  D
Sbjct: 586 ITGYCKAGMVDDGLELFCEMGQRGIVAD 613



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 161/344 (46%), Gaps = 7/344 (2%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
           ++  M  PD   ++L      L+       + + MK F  C  L  A   F  +   G  
Sbjct: 90  VVVRMGRPD-VVISLHKKMEMLRMPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFH 148

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           P  VTF+TL+    + +  ++A++ F +M    C P+ +T++++++   R G V  A  L
Sbjct: 149 PTVVTFNTLLHGLCVEDRISEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVAL 204

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMG 316
            DR   +  + +   + T++      G+    LN+  +M+ +  + PN++ YN ++D + 
Sbjct: 205 LDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLW 264

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +  R      ++ EM +  + P+  TY  ++  +  +    D   + +EM E+ +   V 
Sbjct: 265 KDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVV 324

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            ++ L+      G   EA E++++M    +  P + T+SSMI     + ++  AE MF  
Sbjct: 325 TFSALINAFVKEGKFFEAEELYDEML-PRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYL 383

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               G  P++    +LI  Y +A+R DD ++ L+ + E G+  +
Sbjct: 384 TPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVAN 427



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 147/326 (45%), Gaps = 10/326 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V++YN  +    K      A  LF +M ++ + PD VT++ +I+   ++   + A +  +
Sbjct: 253 VVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQ 312

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M     +PD +T+S++I+A+ + G    A  LYD             +S++I  +    
Sbjct: 313 EMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQN 372

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D   +++      G  P++IT+N L+    RAKR      +  EMT+ GL  N  TY 
Sbjct: 373 RLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYT 432

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+  + +         + +EM   G+  +V   NTLL    D G   +A E+F+ M+ S
Sbjct: 433 TLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKS 492

Query: 405 E----------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           +            +PD  T++ +I      GK  EAE ++ EM   G  P+    +S+I 
Sbjct: 493 KMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 552

Query: 455 CYGKAQRTDDVVRALNRLPELGITPD 480
              K  R D+  +  + +     +PD
Sbjct: 553 GLCKQSRLDEATQMFDSMGSKSFSPD 578



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 146/308 (47%), Gaps = 13/308 (4%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AA  + Y T     S ++I +N  +  + + + +D   +L  +M + G+  + +T++TLI
Sbjct: 376 AAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLI 435

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                    N A +  + M S G  P+ +T ++++D     G ++ A  ++   +  K  
Sbjct: 436 HGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMD 495

Query: 268 IDPN-----------AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           ID +            ++ LI      G F     +YEEM   G+ P+ ITY++++D + 
Sbjct: 496 IDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLC 555

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +  R  +   ++  M     SP+  T+ +L+  Y +A   +D L ++ EM ++G+     
Sbjct: 556 KQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAI 615

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            Y TL+     V   D A +IF++M SS    PD+ T  +M+T    + ++  A AM  +
Sbjct: 616 TYITLIYGFRKVDNIDGALDIFQEMISS-GVYPDTITIRNMLTGLWSKEELERAVAMLED 674

Query: 437 M-LEAGFE 443
           + +  G++
Sbjct: 675 LQMSVGYQ 682



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 143/303 (47%), Gaps = 6/303 (1%)

Query: 190 DMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
           D+  +  KP+ VTF+TL++         +AV   +RM   G  P+ +TY +++D   + G
Sbjct: 172 DLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMG 231

Query: 250 NVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
           +   A  L  R   E   I PN   ++T+I      G      N++ EM+   + P+++T
Sbjct: 232 DTVSALNLL-RKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVT 290

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           YN +++    + R    + + +EM +  ++P+  T+++L+ A+ +     +   +Y EM 
Sbjct: 291 YNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEML 350

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK- 426
            + +  S   Y++++         D A  +F  +  ++ C PD  TF+++I    CR K 
Sbjct: 351 PRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFY-LTPTKGCSPDIITFNTLIA-GYCRAKR 408

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
           V +   + +EM EAG   N    T+LI  + +    +     L  +   G+ P+   C  
Sbjct: 409 VDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNT 468

Query: 487 LLN 489
           LL+
Sbjct: 469 LLD 471



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/280 (19%), Positives = 118/280 (42%), Gaps = 4/280 (1%)

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           + A++ F  M      P  + +  ++    R G  ++   L+ +    +   +  +F+ L
Sbjct: 63  DDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPCNAYSFTIL 122

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           +K + +       L+ + ++  +G  P ++T+N LL  +    R  +   ++ +M     
Sbjct: 123 MKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQMC---- 178

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            PN  T+ +L+    R     + +++   M E G+Q +   Y T++     +G T  A  
Sbjct: 179 KPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALN 238

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           +   M+   +  P+   ++++I      G+ S+A  +F EM E    P++     +I  +
Sbjct: 239 LLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGF 298

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
             + R  D  + L  + E  I PD      L+N   +  K
Sbjct: 299 CISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGK 338


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 161/357 (45%), Gaps = 10/357 (2%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKA-ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           +   I Y+  +    KC  LD+A   L  ++  RG  PD VT+ST+I           AV
Sbjct: 216 AANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAV 275

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           + FE M    C P A+TY+S+I  Y RAG+++ A  L  +  ++    D   ++TL+  +
Sbjct: 276 DIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAF 332

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G  D    ++++M A  + P+++T+ +L+D +    R      + +E+T  G  P  
Sbjct: 333 CKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTI 392

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY  ++  Y ++        +  + + +G   +   YN L+A C   G TD+A +  + 
Sbjct: 393 YTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQ 452

Query: 401 MKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           + S     P S    ++I    CR G+  +A   + EM++ G+ P      +++    KA
Sbjct: 453 LNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKA 512

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNV-----MTQTPKEELGKLVECVEKSNS 511
            +       L  + + G TP    C  +++      M Q   E   +L    +KS+S
Sbjct: 513 HQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRLYTDKSSS 569



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 147/338 (43%), Gaps = 15/338 (4%)

Query: 147 TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKP----DNVT 202
           T A+AL     +L A      YN+   +  K R LD+A  L  DM  RG+ P     NV 
Sbjct: 63  TTAMALFDKMAELGAVNHTTYYNLIHPLC-KARLLDEAMGLLLDMKSRGMNPGTLLHNVV 121

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
              L    R+ +      +  +  P     PD LTY+ ++    +AG +  A  +     
Sbjct: 122 IGGLCRAGRLRHALGVYRQMNDAHP-----PDFLTYTKLVHGLSKAGRLRDAVQVLQEMV 176

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-P 321
           + +   D    + +++        D    + EEM   G+  N ITY+ L+D + + +R  
Sbjct: 177 SARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLD 236

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
             V  +  E+T  G +P+  TY++++    +A    D + ++ EM      ++   YN+L
Sbjct: 237 EAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAIT---YNSL 293

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           +      G  DEA  +   M   +NC PD  T++++++     G++ +A  +F +M+   
Sbjct: 294 IGGYCRAGDMDEAIRLLGKM-VDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANK 352

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             P++   TSL+       R +D +  L  +   G  P
Sbjct: 353 LSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPP 390



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 140/300 (46%), Gaps = 13/300 (4%)

Query: 181 LDKAERLFD------DMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           L KA RL D      +M+     PDN T + ++    + +  + A E  E M   G   +
Sbjct: 159 LSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAAN 218

Query: 235 ALTYSSMIDAYGRAGNVEMAFG-LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           A+TYS+++D   +   ++ A   L        +  D   +ST+I     AG     ++++
Sbjct: 219 AITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIF 278

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
           EEM      P  ITYN+L+    RA    +   +  +M D+  +P+  TY +L+ A+ + 
Sbjct: 279 EEMSC---APTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKM 335

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
              +D   ++++M    +   V  + +L+  +C + G  ++A E+ E++ +   C P  +
Sbjct: 336 GRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGE-GRMEDALELLEEI-TRRGCPPTIY 393

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T++ ++       +V +AE +  +    GF PN      L+    +A RTD  ++ L++L
Sbjct: 394 TYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQL 453



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 123/294 (41%), Gaps = 5/294 (1%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           L D++ DRG+ PD V  +T+++          A+  F++M   G   +  TY ++I    
Sbjct: 33  LLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDKMAELGA-VNHTTYYNLIHPLC 91

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           +A  ++ A GL    ++          + +I     AG     L VY +M      P+ +
Sbjct: 92  KARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMND-AHPPDFL 150

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TY  L+  + +A R      + +EM      P+  T   ++++       +D   +  EM
Sbjct: 151 TYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEM 210

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
             +GM  +   Y+ L+         DEA  +     +     PD  T+S++I      G+
Sbjct: 211 LHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGR 270

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           + +A  +F EM  A   P      SLI  Y +A   D+ +R L ++ +    PD
Sbjct: 271 LRDAVDIFEEMSCA---PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPD 321


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 131/542 (24%), Positives = 231/542 (42%), Gaps = 61/542 (11%)

Query: 56  PTKHS--------QNPQYPHG-KTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLA 106
           PT HS        +NP    G  + ++PK  +     S  A     +SYD R   L+KL 
Sbjct: 21  PTSHSHHTSIVTCRNPNPNDGFNSRNAPKVGV-----SAEARPAHLQSYDFRETHLMKLL 75

Query: 107 ADLDSCSATE-DDVFSVLRCLGDDFLEQDCVI----------------------ILNNMT 143
               SC A + ++    L CL +     D ++                      IL + T
Sbjct: 76  NR--SCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHT 133

Query: 144 NPDTAAL--------------ALTYFTNKLKAS---KEVILYNVTMKVFRKCRDLDKAER 186
            PD  A               A T   N++KA     +++ YN+ +      R L  A +
Sbjct: 134 EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALK 193

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           + D +L     P  +T++ LI    +    N+A++  E M + G  PD  TY+++I    
Sbjct: 194 VLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMC 253

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           + G VE A  L     ++  + D  +++ L++ +   G +D    +  EM + G +PN +
Sbjct: 254 KEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKV 313

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TY+ L+ ++ R  R  +  ++ K M +  L+P+  +Y  L+ A  +    +  + +   M
Sbjct: 314 TYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYM 373

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
              G    +  YNT+LA     G  ++A EIF  ++    C P+  ++++MI+     G 
Sbjct: 374 ISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGM-GCPPNVSSYNTMISALWSCGD 432

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            S A  M   M+  G +P+     SLI C  +    ++ +  L+ + + G  P       
Sbjct: 433 RSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNI 492

Query: 487 LLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SK 543
           +L  + +  +  + +G   E +EK          LL+E     G ++ EA EL NS+ S+
Sbjct: 493 VLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAG-WRTEAMELANSLFSR 551

Query: 544 DV 545
           DV
Sbjct: 552 DV 553



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 145/318 (45%), Gaps = 5/318 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  ++   K   +++A  L   +  +G KPD ++++ L+         ++  +    M 
Sbjct: 245 YNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMF 304

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S GC+P+ +TYS +I +  R G ++ A  +      ++   D  ++  LI      G  D
Sbjct: 305 SRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLD 364

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + + + M + G  P+++ YN +L  + +     Q   I+ ++   G  PN ++Y +++
Sbjct: 365 LAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMI 424

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSEN 406
            A          L +   M  KG+      YN+L++ +C D G  +EA  + +DM+ S  
Sbjct: 425 SALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRD-GLVEEAIGLLDDMEQS-G 482

Query: 407 CQPDSWTFS-SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
            +P   +++  ++ +C  R ++ +A  MF EM+E G  PN      LI+  G A    + 
Sbjct: 483 FRPTVISYNIVLLGLCKVR-RIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEA 541

Query: 466 VRALNRLPELGITPDDRF 483
           +   N L    +   D F
Sbjct: 542 MELANSLFSRDVISQDSF 559



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 134/302 (44%), Gaps = 36/302 (11%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           + AA  +T  T+K     +VI YN+ ++ F      D+ E+L  +M  RG +P+ VT+S 
Sbjct: 259 ERAAELITSLTSK-GCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSI 317

Query: 206 LIS-CARMNNL----------------PNK------------------AVEWFERMPSFG 230
           LIS   R   +                P+                   A+   + M S G
Sbjct: 318 LISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNG 377

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           C PD + Y++++ A  + GN   A  ++++ R      + ++++T+I    + G+    L
Sbjct: 378 CLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRAL 437

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            +   M + GV P+ ITYN+L+  + R     +   +  +M  +G  P   +Y  +L   
Sbjct: 438 GMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGL 497

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
            + R  +D + ++ EM EKG + + T Y  L+      G+  EA E+   + S +    D
Sbjct: 498 CKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVISQD 557

Query: 411 SW 412
           S+
Sbjct: 558 SF 559


>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
          Length = 496

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 167/363 (46%), Gaps = 2/363 (0%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K  D+ +A R+FD+M   G+ P+ VT++ L+     +    K    FE M   G +P+  
Sbjct: 50  KGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLY 109

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           TY+ +I  + R G  E A  L+D         +  +++TLI      G       + + M
Sbjct: 110 TYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMM 169

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           +  G +P++IT+N L+D  G+A +       + +M   G  P+  TY  L+  + RAR  
Sbjct: 170 RTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDM 229

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
                   +MKE+G++ +   Y  L+   A   +  +AFEI   M+ +   + D+ T+  
Sbjct: 230 TRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKA-GLEVDAHTYGV 288

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           ++      G + +A  +F  M E G EP+  +   +I  YG+   +   ++ +  + + G
Sbjct: 289 LVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKG 348

Query: 477 ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT 535
           + P+    G  + V+ +  K +E   L++ +E   S  G+    +  + D +   + + T
Sbjct: 349 LIPNSASYGLTIRVLCKDDKCQEAEALLDDMETIRSFAGHHQNFIASKSDSQQKDEDKCT 408

Query: 536 ELF 538
           E F
Sbjct: 409 EHF 411



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 127/281 (45%), Gaps = 3/281 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   M  +      +K   LF++M   GV+P+  T++ LI          +A   F+ 
Sbjct: 74  VTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDE 133

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           MP  G   + ++Y+++I    R G +  A  L D  R E  R     F+ L+  YG AG 
Sbjct: 134 MPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGK 193

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               L  + +MKA G +P+ +TYN L+    RA+   +      +M + GL P   TY  
Sbjct: 194 MSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTI 253

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSS 404
           L+ ++ R  +      +   M++ G+++    Y  L+ A+C + G   +A ++F+ M   
Sbjct: 254 LIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCME-GNMKDARKLFQSM-GE 311

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
           +  +P +  +  MI      G   +A  +  EM + G  PN
Sbjct: 312 KGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPN 352



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 135/289 (46%), Gaps = 3/289 (1%)

Query: 151 ALTYFTNKLKASKEVILYNVTMKVFRKCR--DLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
               F    +   E  LY     +   CR  + ++A  LFD+M  RG+  + V+++TLI+
Sbjct: 92  GFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIA 151

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               +     A +  + M + G  P  +T++ ++D YG+AG +  A   +++ +   ++ 
Sbjct: 152 GLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQP 211

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
               ++ LI  +  A +         +MK  G++P  +TY  L+D+  R     +   I 
Sbjct: 212 SAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEIL 271

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             M   GL  + +TY  L+RA       +D   +++ M EKG++ S  +Y+ ++      
Sbjct: 272 AGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGRE 331

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           G + +A ++  +M+  +   P+S ++   I +     K  EAEA+ ++M
Sbjct: 332 GSSYKALKLIMEMR-QKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDM 379


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 152/315 (48%), Gaps = 2/315 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRG-VKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           Y   +  + K   +D+A ++FD+ML +G VKP+ V ++ LI         + A+ + +RM
Sbjct: 553 YGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRM 612

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G      TY+ ++ A    G    A+ L +    +    D   ++ LI  +   GN 
Sbjct: 613 VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNV 672

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              L ++E M   GV+  ++TY  L+  + +  +  +   ++ E    G+ P+   Y +L
Sbjct: 673 KKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 732

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + ++  +   +    +  EM++K +      YNTL+     +G  DEA ++ ++M +   
Sbjct: 733 INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM-TERG 791

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            QPD  T++++I+  S +G V +A  + NEM+  GF P L    +LIQ   K  + DD  
Sbjct: 792 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 851

Query: 467 RALNRLPELGITPDD 481
             +  + E GITPDD
Sbjct: 852 NMVKEMVENGITPDD 866



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 1/236 (0%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A  L ++M  +G+ PD  T++ LI+         KA+E FE M   G     +TY+++I
Sbjct: 639 EAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALI 698

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            A  + G V+    L+D A     R D   ++ LI  + T+GN D    +  EM+   + 
Sbjct: 699 YALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIA 758

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P+ +TYN L+  +    R  + + +  EMT+ G+ P+  TY +L+  Y      +D L +
Sbjct: 759 PDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRI 818

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
             EM  KG   ++  YN L+      G  D+A  + ++M  +    PD  T+ S+I
Sbjct: 819 RNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN-GITPDDSTYISLI 873



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 138/299 (46%), Gaps = 11/299 (3%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LF DM    +     TF+ ++        P +A+E   +MP     P+A+TY+++I  + 
Sbjct: 470 LFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFC 525

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIG-VKP 303
             G V+ A  +  R   E+  I PN ++  T+I  +   G  D  + V++EM   G VKP
Sbjct: 526 SRGRVQAALDIM-REMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKP 584

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKE-MTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
             + YN L+       +      +Y++ M + G++    TY  L+ A      G +   +
Sbjct: 585 EAVMYNALIGGYCDQGK-LDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 643

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
             EM  KG+   V  YN L+      G   +A EIFE+M S    +    T++++I   S
Sbjct: 644 VEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM-SRRGVRATVVTYTALIYALS 702

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
            +G+V E + +F+E +  G  P+L +  +LI  +  +   D     +  + +  I PDD
Sbjct: 703 KKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 761



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 113/264 (42%), Gaps = 16/264 (6%)

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           L +Y  MK++ +  +  + + LL  +  A        ++ +M    L     T+  +LR 
Sbjct: 437 LRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLRH 492

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
              A      L + R+M       +   YNT++A     G    A +I  +M+      P
Sbjct: 493 LCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAP 548

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           + +T+ ++I+     G+V EA  +F+EML  G  +P   +  +LI  Y    + D  +  
Sbjct: 549 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 608

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG---YVVKLLLEEQ 524
            +R+ E G+         L++ +    +  E  +LVE  E     L    +   +L+   
Sbjct: 609 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVE--EMGGKGLAPDVFTYNILINGH 666

Query: 525 DIEGDFKKEATELFNSISKDVKKA 548
             EG+ KK A E+F ++S+   +A
Sbjct: 667 CKEGNVKK-ALEIFENMSRRGVRA 689


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 148/317 (46%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y+  +    K R +DKAE +   M+  G +PD VT++ +I    +     +    F
Sbjct: 261 DVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMF 320

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  PD  T +S + +  + G  + A   +D    +  + D   +S L+  Y   
Sbjct: 321 REMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAE 380

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     LN++  M+  G+  +   YN L+D  G+     +   I+ +M + G+ P+  TY
Sbjct: 381 GYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTY 440

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +++ A+ R     D +  + +M   G++    +YN+L+      G   +A E+  +M S
Sbjct: 441 GTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMS 500

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               +P++  F+S+I      G+V EA+ +F+ ++  G  P++    SLI  YG   + +
Sbjct: 501 RGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKME 560

Query: 464 DVVRALNRLPELGITPD 480
                L+ +  +GI PD
Sbjct: 561 KAFGVLDAMISVGIEPD 577



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 154/292 (52%), Gaps = 2/292 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV-KPDNVTFSTLISCARMNNLPNKAVEW 222
           + I+YN  ++ F    +L KA+ L  +M+ RG+ +P+ V F+++I+         +A + 
Sbjct: 471 DTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDI 530

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F+ +   G  PD +T++S+ID YG  G +E AFG+ D   +     D   +S L+  Y  
Sbjct: 531 FDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCR 590

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G  D  L ++ EM + GVKP  ITY  +L  +    R    K +  EM ++G + + +T
Sbjct: 591 NGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDIST 650

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
              +L    R    ++ +++++++    ++ ++ + NT++     V   +EA E+F+ + 
Sbjct: 651 CGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSI- 709

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           S+    P++ T+  MIT     G V EA+ MF+ M ++G  P+  +L ++I+
Sbjct: 710 SATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNIIR 761



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 146/313 (46%), Gaps = 3/313 (0%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR--GVKPDNVTF 203
           D A   L +   +L    + I Y+  +K   +     +A  L   M+ +  G  P+ V++
Sbjct: 171 DDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSY 230

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
           +T+I         +KA   F  M   G  PD +TYSS IDA  +A  ++ A  +  +  +
Sbjct: 231 NTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMIS 290

Query: 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
             +  D   ++ +I  Y   G +     ++ EM   G+ P++ T N+ + ++ +  +  +
Sbjct: 291 NGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKE 350

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
               +  M   G  P+  TY+ LL  Y    Y  D L+++  M+  G+    ++YN L+ 
Sbjct: 351 AAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILID 410

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
                G  DEA  IF  M+      PD+WT+ ++I   S  G++++A   FN+M+  G +
Sbjct: 411 AYGKRGMMDEAMLIFTQMQ-ERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLK 469

Query: 444 PNLFVLTSLIQCY 456
           P+  V  SLIQ +
Sbjct: 470 PDTIVYNSLIQGF 482



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 161/365 (44%), Gaps = 9/365 (2%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A   FD M  +G KPD VT+S L+            +  F  M   G   D   Y+ +I
Sbjct: 350 EAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILI 409

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
           DAYG+ G ++ A  ++ + +      D   + T+I  +   G     ++ + +M A+G+K
Sbjct: 410 DAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLK 469

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAY---GRARYGED 358
           P+ I YN+L+          + K +  EM   G+  PN   + S++ +    GR    +D
Sbjct: 470 PDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQD 529

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
              +   + E+     V  +N+L+     VG  ++AF + + M S    +PD  T+S+++
Sbjct: 530 IFDLVIHIGERP---DVITFNSLIDGYGLVGKMEKAFGVLDAMISV-GIEPDVVTYSALL 585

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 G++ +   +F EML  G +P       ++       RT    +  + + E G T
Sbjct: 586 DGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTT 645

Query: 479 PDDRFCGCLLNVMTQTP-KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 537
            D   CG +L  + +    +E   L + +   N K    +   + +   +   ++EA EL
Sbjct: 646 MDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANEL 705

Query: 538 FNSIS 542
           F+SIS
Sbjct: 706 FDSIS 710



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 131/315 (41%), Gaps = 18/315 (5%)

Query: 182 DKAERLFDDMLDRGVK-PDNVTFSTLISCARM------NNLPNKAVEWFERM------PS 228
           +    LFD++L +    P+      L + AR        + P+ AV  F R+      P 
Sbjct: 54  EDTHHLFDELLRQTTPVPERALNGFLTALARAPSSATCRDGPSLAVALFNRICREEARPR 113

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
               P   TY+ ++D   RA    + F L+ R      + D    + L+K    A   D 
Sbjct: 114 VAL-PTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDD 172

Query: 289 CLNV-YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT--DNGLSPNWNTYAS 345
            +NV    M  +GV+P+ I+Y+ +L ++    R  +   +   M     G SPN  +Y +
Sbjct: 173 AVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNT 232

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++  + R        +++ EM ++G+   V  Y++ +         D+A  +   M S+ 
Sbjct: 233 VIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISN- 291

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +PD  T++ MI   S  G+  E   MF EM   G  P++F   S +    K  ++ + 
Sbjct: 292 GFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEA 351

Query: 466 VRALNRLPELGITPD 480
               + +   G  PD
Sbjct: 352 AEFFDSMAAKGHKPD 366



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 132/301 (43%), Gaps = 40/301 (13%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +N  +    K   + +A+ +FD ++  G +PD +TF++LI    +     KA    + 
Sbjct: 509 VFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDA 568

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG---- 281
           M S G +PD +TYS+++D Y R G ++    L+    ++   + P   +  I L+G    
Sbjct: 569 MISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKG--VKPTTITYGIILHGLFND 626

Query: 282 -----------------------TAGNFDG--CLN--------VYEEMKAIGVKPNMITY 308
                                  T G   G  C N        +++++ A+ VK N+   
Sbjct: 627 GRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAII 686

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N ++D M + ++  +   ++  ++  GL PN +TY  ++    +    E+  +++  M++
Sbjct: 687 NTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEK 746

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G   S  L N ++ +  + G   +A      +   +    ++ T S M+++ S +GK  
Sbjct: 747 SGCAPSSRLLNNIIRVLLEKGEISKAGNYLSKV-DGKTISLEASTASLMLSLFSRKGKYR 805

Query: 429 E 429
           E
Sbjct: 806 E 806



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 94/199 (47%), Gaps = 4/199 (2%)

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
           EE +     P + TYN L+D   RA RP     ++      GL  +      LL+    A
Sbjct: 108 EEARPRVALPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHA 167

Query: 354 RYGEDTLSVY-REMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDM-KSSENCQPD 410
           +  +D ++V    M E G++     Y+T+L ++C D   +  A ++   M K S  C P+
Sbjct: 168 KRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCED-SRSQRALDLLHTMVKKSGGCSPN 226

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
             +++++I      G+VS+A  +F+EM++ G  P++   +S I    KA+  D     L 
Sbjct: 227 VVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLR 286

Query: 471 RLPELGITPDDRFCGCLLN 489
           ++   G  PD     C+++
Sbjct: 287 QMISNGFEPDKVTYNCMIH 305


>gi|302798857|ref|XP_002981188.1| hypothetical protein SELMODRAFT_420654 [Selaginella moellendorffii]
 gi|300151242|gb|EFJ17889.1| hypothetical protein SELMODRAFT_420654 [Selaginella moellendorffii]
          Length = 796

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 119/577 (20%), Positives = 237/577 (41%), Gaps = 49/577 (8%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A+    + LKA K     + YN  +KV+ K   LD+A   + +M D    PD  TF+TL+
Sbjct: 153 AVQRVLSDLKADKCPMTTVAYNTLIKVYGKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLM 212

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           S         K +E ++ M   GC  D + Y  ++   G+ G +++A  L++R + E  +
Sbjct: 213 SLYSYAGQSEKVLEVYDEMQKIGCSLDRVGYEVVVPHAGKVGRLDLACMLFERMKAEGHQ 272

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            +  A+S LI     +G  +     +EEM+++ ++P + T+ +L++   ++ R       
Sbjct: 273 PNAVAYSALIAGQLKSGRLEIGTKYFEEMRSLEIRPLLGTFASLIEAYCKSGRLETGLKF 332

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           +K+M      PN   YA+L+ A+ +A   +  L  Y  M+  G+ L   ++  L+   A 
Sbjct: 333 FKDMEAFNYKPNLCIYAALVDAHAKAGMLDAALEFYERMRGVGLWLPPLIFAVLIEQHAQ 392

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G  + A  ++ +M+     +P  +T   ++   +  GK  + E +  EM E G      
Sbjct: 393 AGKAETAVRLYREMRGV-GLRPSHFTCRIVVGAVAKGGKYDDVERILFEMQEMGLNVADA 451

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN-VMTQTPKEELGKLVECV 506
           V  S+++     +R  D      ++   G TP    C  +L+  ++    E   +++  +
Sbjct: 452 VNDSIVKLVDD-KRISDAWELFLKVTGHGFTPHVSLCREILHGFLSCGDMEHARQMLSFM 510

Query: 507 EKSNSKLG----------YVVKLLLEEQDIEGDFKKEA---------------------- 534
           ++  S +           ++    LE +++   F +E                       
Sbjct: 511 QRPGSAVDLRTYCMLLEFFLRGSRLEHEEVVMSFMRETKHPAHSFLCGLMGSSKHRNGQS 570

Query: 535 ---------TELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQS 584
                    +EL   +    ++   N L++  V +     A    ++   + +Y + I  
Sbjct: 571 LADYIKSFYSELEAEVDFKTRRYLTNVLLNYLVVMGQERKARSFWKVVYQIHMYPNSIVL 630

Query: 585 RSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLA 644
           +    W L ++S+S+GAAL  +   +    + +      P  + I TG  K       + 
Sbjct: 631 QGDLTWCLKVRSMSIGAALIGVLCTLEKFRERILKRRFVPQRIKILTG-SKADSDAIAVR 689

Query: 645 SVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLES 681
              E+ +K L++PF    + +G F    +    W   
Sbjct: 690 QAIEAMMKPLDSPFIFQDEDLGSFWCRGSFFVKWFRQ 726



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 150/344 (43%), Gaps = 1/344 (0%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
           +L N+  PD A     +   +         +++ +  + + +D    +R+  D+      
Sbjct: 108 VLKNIQEPDVANGFFQWIRRQKWYVPSTYSFSILLNTYGRGKDFQAVQRVLSDLKADKCP 167

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
              V ++TLI      +  ++A  +++ M    C PD  T+++++  Y  AG  E    +
Sbjct: 168 MTTVAYNTLIKVYGKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEV 227

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
           YD  +     +D   +  ++   G  G  D    ++E MKA G +PN + Y+ L+    +
Sbjct: 228 YDEMQKIGCSLDRVGYEVVVPHAGKVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQLK 287

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
           + R       ++EM    + P   T+ASL+ AY ++   E  L  +++M+    + ++ +
Sbjct: 288 SGRLEIGTKYFEEMRSLEIRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYKPNLCI 347

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           Y  L+   A  G  D A E +E M+      P    F+ +I   +  GK   A  ++ EM
Sbjct: 348 YAALVDAHAKAGMLDAALEFYERMRGVGLWLP-PLIFAVLIEQHAQAGKAETAVRLYREM 406

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
              G  P+ F    ++    K  + DDV R L  + E+G+   D
Sbjct: 407 RGVGLRPSHFTCRIVVGAVAKGGKYDDVERILFEMQEMGLNVAD 450



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 134/303 (44%), Gaps = 3/303 (0%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           ++P     + ++   +  ++ N   +W  R   +   P   ++S +++ YGR  + +   
Sbjct: 98  IRPSEFHINEVLKNIQEPDVANGFFQWIRRQKWY--VPSTYSFSILLNTYGRGKDFQAVQ 155

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            +    + +K  +   A++TLIK+YG A   D     Y+EM+     P++ T+N L+   
Sbjct: 156 RVLSDLKADKCPMTTVAYNTLIKVYGKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLY 215

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
             A +  +V  +Y EM   G S +   Y  ++   G+    +    ++  MK +G Q + 
Sbjct: 216 SYAGQSEKVLEVYDEMQKIGCSLDRVGYEVVVPHAGKVGRLDLACMLFERMKAEGHQPNA 275

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y+ L+A     G  +   + FE+M+S E  +P   TF+S+I      G++      F 
Sbjct: 276 VAYSALIAGQLKSGRLEIGTKYFEEMRSLE-IRPLLGTFASLIEAYCKSGRLETGLKFFK 334

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
           +M    ++PNL +  +L+  + KA   D  +    R+  +G+         L+    Q  
Sbjct: 335 DMEAFNYKPNLCIYAALVDAHAKAGMLDAALEFYERMRGVGLWLPPLIFAVLIEQHAQAG 394

Query: 496 KEE 498
           K E
Sbjct: 395 KAE 397


>gi|299469706|emb|CBN76560.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 915

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 144/315 (45%), Gaps = 2/315 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM- 226
           Y   +    +  D   A RL  DM + GV P++V  +  +      + P++A++    M 
Sbjct: 365 YASAITACARAHDPRSAMRLLADMREDGVPPNDVVLNAAVDACGKGDAPDEALKLLRGME 424

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            ++G  P+ +T++S I    RAG    A  L +       + D  +F+  ++ +  AG+ 
Sbjct: 425 KAYGVKPNTVTFNSAISGLSRAGRAREAKALLNEMSERGLKPDNFSFNAAMQGFAAAGDP 484

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
               ++ +EMK+ G+  ++++Y   +    +A        + KEM + G+ PN   Y S 
Sbjct: 485 RNTASLSDEMKSRGIGMDVVSYGTAVSACAKAGDVKGALKLLKEMQEAGVEPNTVVYNSA 544

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L A GRA   +    + R+M E G+    T Y   +  C+  G  D+A E  E M S E 
Sbjct: 545 LDACGRAGKPKVAEKLLRKMGETGVVRDATSYTGAIVACSRNGDGDKALEWLETM-SKEG 603

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             P++ T++  +  C   G   +AE + NEM   G  PN    ++ +   GKA R  DV+
Sbjct: 604 IAPEAITYNYAMAACGRSGNDRQAEWLLNEMRGQGVTPNRISYSAAMFALGKAGRLPDVL 663

Query: 467 RALNRLPELGITPDD 481
             L  +   G+  D+
Sbjct: 664 SLLEEMHREGVEADE 678



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 117/240 (48%), Gaps = 8/240 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERM 226
           +N  M+ F    D      L D+M  RG+  D V++ T +S CA+  ++   A++  + M
Sbjct: 471 FNAAMQGFAAAGDPRNTASLSDEMKSRGIGMDVVSYGTAVSACAKAGDVKG-ALKLLKEM 529

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G +P+ + Y+S +DA GRAG  ++A  L  +        D  +++  I      G+ 
Sbjct: 530 QEAGVEPNTVVYNSALDACGRAGKPKVAEKLLRKMGETGVVRDATSYTGAIVACSRNGDG 589

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  L   E M   G+ P  ITYN  +   GR+    Q + +  EM   G++PN  +Y++ 
Sbjct: 590 DKALEWLETMSKEGIAPEAITYNYAMAACGRSGNDRQAEWLLNEMRGQGVTPNRISYSAA 649

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL---AMCADVGYTDEAFEIFEDMKS 403
           + A G+A    D LS+  EM  +G++     Y+  +   ++  D+G    A ++F +M++
Sbjct: 650 MFALGKAGRLPDVLSLLEEMHREGVEADEVTYHIAVDAASIARDLGC---AMDLFREMRA 706



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 143/351 (40%), Gaps = 50/351 (14%)

Query: 106 AADLDSCSATEDDVFSVLRCLGDDFLEQDCV----IILNNMTN-------PDTAALALTY 154
           A+ + +C A   D  S +R L D  + +D V    ++LN   +       PD A   L  
Sbjct: 366 ASAITAC-ARAHDPRSAMRLLAD--MREDGVPPNDVVLNAAVDACGKGDAPDEALKLLRG 422

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
                      + +N  +    +     +A+ L ++M +RG+KPDN +F+  +       
Sbjct: 423 MEKAYGVKPNTVTFNSAISGLSRAGRAREAKALLNEMSERGLKPDNFSFNAAMQGFAAAG 482

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
            P       + M S G   D ++Y + + A  +AG+V+                      
Sbjct: 483 DPRNTASLSDEMKSRGIGMDVVSYGTAVSACAKAGDVK---------------------- 520

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
                        G L + +EM+  GV+PN + YN+ LD  GRA +P   + + ++M + 
Sbjct: 521 -------------GALKLLKEMQEAGVEPNTVVYNSALDACGRAGKPKVAEKLLRKMGET 567

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G+  +  +Y   + A  R   G+  L     M ++G+      YN  +A C   G   +A
Sbjct: 568 GVVRDATSYTGAIVACSRNGDGDKALEWLETMSKEGIAPEAITYNYAMAACGRSGNDRQA 627

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
             +  +M+  +   P+  ++S+ +      G++ +  ++  EM   G E +
Sbjct: 628 EWLLNEMR-GQGVTPNRISYSAAMFALGKAGRLPDVLSLLEEMHREGVEAD 677



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 127/292 (43%), Gaps = 14/292 (4%)

Query: 177 KCRDLDKAERLFDDMLDR-GVKPDNVTFSTL-ISCARMNNLPNKAVEWFERMPSFGCD-- 232
           + ++L KA R F+ ML+     P N    T+ I+C        +AVE  + M   G    
Sbjct: 195 RIKELAKA-RDFEGMLEALEEGPKNAIVCTVAITCLGQAGKWREAVEVLDGMGKGGDGSD 253

Query: 233 -PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI----KLYGTAGNFD 287
            PDA  Y++ I+A G+AG    A  L       + + D   F + I    ++ GT     
Sbjct: 254 RPDAFAYAATINACGKAGRPVEAVALLTEMPTRRVKPDVVCFGSAIFALGEVAGTQNRST 313

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
                 +E    G KP      +   T    K       + +EM   G SPN   YAS +
Sbjct: 314 WGRKGADEGGEGGDKPIASAVADPKPTRAHEK----ALELIQEMRREGPSPNSQCYASAI 369

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A  RA      + +  +M+E G+  +  + N  +  C      DEA ++   M+ +   
Sbjct: 370 TACARAHDPRSAMRLLADMREDGVPPNDVVLNAAVDACGKGDAPDEALKLLRGMEKAYGV 429

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +P++ TF+S I+  S  G+  EA+A+ NEM E G +P+ F   + +Q +  A
Sbjct: 430 KPNTVTFNSAISGLSRAGRAREAKALLNEMSERGLKPDNFSFNAAMQGFAAA 481



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 120/271 (44%), Gaps = 9/271 (3%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGD 128
           + G + ++   +N  S R  K    S++         A D  + ++  D++ S  R +G 
Sbjct: 445 RAGRAREAKALLNEMSERGLKPDNFSFNAAMQGFAA-AGDPRNTASLSDEMKS--RGIGM 501

Query: 129 DFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLF 188
           D +     +           AL L     +       ++YN  +    +      AE+L 
Sbjct: 502 DVVSYGTAVSACAKAGDVKGALKLLKEMQEAGVEPNTVVYNSALDACGRAGKPKVAEKLL 561

Query: 189 DDMLDRGVKPDNVTFS-TLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
             M + GV  D  +++  +++C+R N   +KA+EW E M   G  P+A+TY+  + A GR
Sbjct: 562 RKMGETGVVRDATSYTGAIVACSR-NGDGDKALEWLETMSKEGIAPEAITYNYAMAACGR 620

Query: 248 AGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
           +GN   A  L +  R +   + PN  ++S  +   G AG     L++ EEM   GV+ + 
Sbjct: 621 SGNDRQAEWLLNEMRGQG--VTPNRISYSAAMFALGKAGRLPDVLSLLEEMHREGVEADE 678

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           +TY+  +D    A+       +++EM   GL
Sbjct: 679 VTYHIAVDAASIARDLGCAMDLFREMRARGL 709


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 168/321 (52%), Gaps = 9/321 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y+  +  +    +L K  +L  +M  +G+KP+  T++++I     +   + A    
Sbjct: 9   DVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVL 68

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M + G  PD + Y+++ID + + GN++ A+ L+D    EK RI P+  A++ +I    
Sbjct: 69  REMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEM--EKQRIVPDFIAYTAVICGLC 126

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G       V+ +M + GV+P+ +TY  L+D   ++    +  +++ +M  +GL+PN  
Sbjct: 127 RCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVV 186

Query: 342 TYASLLRAYGRARYGE-DTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
           TY +L  A G  + G+ DT + +  EM  KG+QL++  YN+L+      G   +A ++ E
Sbjct: 187 TYTAL--ADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLME 244

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +M+ +    PD+ TF++++      G++ +A  +  EML+ G +P +     L+  +  +
Sbjct: 245 EMEVA-GMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMS 303

Query: 460 QRTDDVVRALNRLPELGITPD 480
              +D  R L  + E GI P+
Sbjct: 304 GMLEDGERLLAWMLEKGIMPN 324



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 159/350 (45%), Gaps = 12/350 (3%)

Query: 99  YNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVI---ILNNMTNPDTAALALTYF 155
           YNS++ L       S   DD   VLR + +  +  D V+   +++          A   F
Sbjct: 48  YNSIILLLCK----SGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLF 103

Query: 156 --TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
               K +   + I Y   +    +C  + +A+++F+ M  RGV+PD VT++TLI     +
Sbjct: 104 DEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKS 163

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
               KA     +M   G  P+ +TY+++ D   + G V+ A  L      +  +++   +
Sbjct: 164 GEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTY 223

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           ++L+     +GN    + + EEM+  G+ P+ IT+  L+D   +     +   + +EM D
Sbjct: 224 NSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLD 283

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
            GL P   T+  L+  +  +   ED   +   M EKG+  + T YN+L+           
Sbjct: 284 RGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRC 343

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGF 442
             EI++ M  +    PDS T++ +I    C+ + + EA  +  EM E GF
Sbjct: 344 TTEIYKGM-CARGVMPDSNTYNILIK-GHCKARNMKEAWFLHKEMAEKGF 391



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 98/186 (52%), Gaps = 3/186 (1%)

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           MK  G  P++++Y+ +++         +V  + +EM   GL PN  TY S++    ++  
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            +D   V REM  +G+     +Y TL+     +G    A+++F++M+  +   PD   ++
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEME-KQRIVPDFIAYT 119

Query: 416 SMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           ++I  +C C GK+ EA+ +FN+M   G EP+    T+LI  Y K+   +      N++ +
Sbjct: 120 AVICGLCRC-GKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQ 178

Query: 475 LGITPD 480
            G+TP+
Sbjct: 179 SGLTPN 184



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 119/249 (47%), Gaps = 14/249 (5%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +  YN  +    K  ++ +A +L ++M   G+ PD +TF+TL+          KA E   
Sbjct: 220 ICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLR 279

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID----PNA--FSTLIK 278
            M   G  P  +T++ +++ +  +G +E      D  R   W ++    PN   +++L+K
Sbjct: 280 EMLDRGLQPTVITFNVLMNGFCMSGMLE------DGERLLAWMLEKGIMPNTTTYNSLMK 333

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            Y    N      +Y+ M A GV P+  TYN L+    +A+   +   ++KEM + G + 
Sbjct: 334 QYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNL 393

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
             ++Y S+++ + + +   +   ++ EM+ +GM     +YN  + +    G  + A E+ 
Sbjct: 394 TASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALELC 453

Query: 399 EDMKSSENC 407
           ++  + ENC
Sbjct: 454 DE--AIENC 460


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 155/320 (48%), Gaps = 5/320 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEW 222
           ++  +NV M  F K  D+  A  +FD++  RG++P  V+F+TLIS C +  ++  +    
Sbjct: 247 KIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDV-EEGFRL 305

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
              M S G  PD  T+S++I+   + G ++    L+D         +   F+TLI     
Sbjct: 306 KGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCK 365

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G  D  L  ++ M A GV+P+++TYN L++ + +     + + +  EMT +GL P+  T
Sbjct: 366 GGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKIT 425

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           + +L+    +    E  L + R M E+G++L    +  L++     G   +A  +  DM 
Sbjct: 426 FTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDML 485

Query: 403 SSENCQPDSWTFSSMITICSC-RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           S+   +PD  T+ +M+  C C +G V     +  EM   G  P +    +L+    K  +
Sbjct: 486 SA-GFKPDDPTY-TMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQ 543

Query: 462 TDDVVRALNRLPELGITPDD 481
             +    L+ +  +G+ P+D
Sbjct: 544 MKNAKMLLDAMLNVGVAPND 563



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 133/291 (45%), Gaps = 2/291 (0%)

Query: 169 NVTMKVFR-KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           N+  +V R +  +++++  L+ ++LD G  P    F+ L+           A   F+ +P
Sbjct: 216 NLLRRVVRLRPVEIERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIP 275

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P  ++++++I    ++G+VE  F L     +E    D   FS LI      G  D
Sbjct: 276 KRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLD 335

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +++EM   G+ PN +T+  L+D   +  +       ++ M   G+ P+  TY +L+
Sbjct: 336 EGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALI 395

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +    ++   +  EM   G++     + TL+  C   G  + A EI   M   E  
Sbjct: 396 NGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRM-VEEGI 454

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           + D   F+++I+     G+V +A  M  +ML AGF+P+    T +I C+ K
Sbjct: 455 ELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCK 505



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 150/339 (44%), Gaps = 22/339 (6%)

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
           G  P    ++ ++  + +AG+V  A  ++D       R    +F+TLI     +G+ +  
Sbjct: 243 GYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEG 302

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
             +   M++ GV P++ T++ L++ + +  R  +   ++ EM   GL PN  T+ +L+  
Sbjct: 303 FRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDG 362

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
             +    +  L  ++ M  +G++  +  YN L+     VG   EA  +  +M +S   +P
Sbjct: 363 QCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTAS-GLKP 421

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           D  TF+++I  C   G +  A  +   M+E G E +    T+LI    +  R  D  R L
Sbjct: 422 DKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRML 481

Query: 470 NRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC-VEKSNSKLGYVVKLLLEEQDIEG 528
             +   G  PDD             P   +  +++C  +K + K+G+    LL+E   +G
Sbjct: 482 TDMLSAGFKPDD-------------PTYTM--VIDCFCKKGDVKMGFK---LLKEMQSDG 523

Query: 529 DFKKEAT--ELFNSISKDVKKAYCNCLIDLCVNLNLLEN 565
                 T   L N + K  +      L+D  +N+ +  N
Sbjct: 524 HVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPN 562



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 114/236 (48%), Gaps = 7/236 (2%)

Query: 150 LALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           LAL  F   L      +++ YN  +    K  DL +A RL ++M   G+KPD +TF+TLI
Sbjct: 371 LALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLI 430

Query: 208 -SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
             C +  ++   A+E   RM   G + D + ++++I    R G V  A  +     +  +
Sbjct: 431 DGCCKDGDM-ESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGF 489

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           + D   ++ +I  +   G+      + +EM++ G  P ++TYN L++ + +  +    K 
Sbjct: 490 KPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKM 549

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +   M + G++PN  TY  LL   G +++G  ++ V     EKG+      Y  L+
Sbjct: 550 LLDAMLNVGVAPNDITYNILLD--GHSKHGS-SVDVDIFNSEKGLVTDYASYTALV 602



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 117/286 (40%), Gaps = 38/286 (13%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           LD+   LFD+M  RG+ P+ VTF+TLI         + A++ F+ M + G  PD +TY++
Sbjct: 334 LDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNA 393

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I+   + G+++ A  L +       + D   F+TLI      G+ +  L +   M   G
Sbjct: 394 LINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEG 453

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           ++ + + +  L+  + R  R      +  +M   G  P+  TY  ++  + +    +   
Sbjct: 454 IELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGF 513

Query: 361 SVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
            + +EM+  G    V  YN L+  +C                                  
Sbjct: 514 KLLKEMQSDGHVPGVVTYNALMNGLCK--------------------------------- 540

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
               +G++  A+ + + ML  G  PN      L+  + K   + DV
Sbjct: 541 ----QGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHGSSVDV 582


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 157/317 (49%), Gaps = 3/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           V+ Y+  +  F K   L +A + F DM+  G++P+  T+++LI    ++ +L N+A +  
Sbjct: 356 VVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDL-NEAFKLE 414

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G + + +TY++++D     G +  A  L+       W ++   +++L   Y  A
Sbjct: 415 SEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKA 474

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              +  +++ EEM    +KP+++ Y   +  + R         + +EM D GL+ N   Y
Sbjct: 475 KMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIY 534

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ AY +     + +++ +EM++ G++++V  Y  L+     +G   +A   F+ M +
Sbjct: 535 TTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHM-T 593

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               QP+   ++++I        + EA+ +FNEML+ G  P+  V TSLI    K     
Sbjct: 594 RNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPG 653

Query: 464 DVVRALNRLPELGITPD 480
           + +   NR+ E+G+  D
Sbjct: 654 EALSLRNRMVEIGMELD 670



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 160/357 (44%), Gaps = 38/357 (10%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNL 215
           NK +   +V   N  +    K      A   F DM+  G+ P   T++ +I C AR  +L
Sbjct: 208 NKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDL 267

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
              A   FE M + G  PD +TY+S+ID YG+ G +  A  +++  ++     D   +++
Sbjct: 268 -EAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNS 326

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LI  +               MK  G++PN++TY+ L+D   +A    +    + +M   G
Sbjct: 327 LINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVG 386

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD------- 387
           L PN  TY SL+ A  +     +   +  EM++ G+ L++  Y  LL  +C D       
Sbjct: 387 LQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAE 446

Query: 388 --------VGYT-------------------DEAFEIFEDMKSSENCQPDSWTFSSMITI 420
                    G+T                   ++A +I E+M + +N +PD   + + I  
Sbjct: 447 ELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEM-NKKNLKPDLLLYGTKIWG 505

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
              + ++ ++ A+  EM++ G   N ++ T+LI  Y K  +T + V  L  + +LGI
Sbjct: 506 LCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGI 562



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 137/262 (52%), Gaps = 1/262 (0%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A+ +F+ M   G  P   TY+ +I    R G++E A  L++  + +  R D   +++LI 
Sbjct: 235 ALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLID 294

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            YG  G   G ++V+EEMK  G +P++ITYN+L++   + +R  Q       M   GL P
Sbjct: 295 GYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQP 354

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N  TY++L+ A+ +A    +    + +M   G+Q +   Y +L+     +G  +EAF++ 
Sbjct: 355 NVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLE 414

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
            +M+ +     +  T+++++      G++ EAE +F  +L+AG+  N  + TSL   Y K
Sbjct: 415 SEMQQA-GVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIK 473

Query: 459 AQRTDDVVRALNRLPELGITPD 480
           A+  +  +  L  + +  + PD
Sbjct: 474 AKMMEKAMDILEEMNKKNLKPD 495



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 128/275 (46%), Gaps = 4/275 (1%)

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
             F TL  +    G  +     + +M    V P + + N LL  + ++ +     + +K+
Sbjct: 182 GVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKD 241

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           M   GLSP+  TY  ++    R    E   S++ EMK KG++  +  YN+L+     VG 
Sbjct: 242 MVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGM 301

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVL 449
              A  +FE+MK +  C+PD  T++S+I  C C+  ++ +A    + M + G +PN+   
Sbjct: 302 LTGAVSVFEEMKDA-GCEPDVITYNSLIN-CFCKFERIPQAFEYLHGMKQRGLQPNVVTY 359

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 508
           ++LI  + KA    +  +    +  +G+ P++     L++   +     E  KL   +++
Sbjct: 360 STLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQ 419

Query: 509 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543
           +   L  V    L +   E    +EA ELF ++ K
Sbjct: 420 AGVNLNIVTYTALLDGLCEDGRMREAEELFGALLK 454



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 125/281 (44%), Gaps = 3/281 (1%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           C D  + +AE LF  +L  G   +   +++L        +  KA++  E M      PD 
Sbjct: 437 CEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDL 496

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           L Y + I    R   +E +  +     +     +   ++TLI  Y   G     +N+ +E
Sbjct: 497 LLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQE 556

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M+ +G+K  ++TY  L+D + +     Q    +  MT NGL PN   Y +L+    +   
Sbjct: 557 MQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDC 616

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            E+  +++ EM +KG+     +Y +L+      G   EA  +   M      + D   ++
Sbjct: 617 LEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEI-GMELDLCAYT 675

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           S+I   S  G+V  A+++ +EML  G  P+  +   L++ Y
Sbjct: 676 SLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKY 716



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 127/283 (44%), Gaps = 15/283 (5%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y      + K + ++KA  + ++M  + +KPD + + T I      N    ++     M
Sbjct: 463 IYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREM 522

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G   ++  Y+++IDAY + G    A  L    ++   +I    +  LI      G  
Sbjct: 523 MDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLV 582

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              +  ++ M   G++PN++ Y  L+D + +     + K ++ EM D G+SP+   Y SL
Sbjct: 583 QQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSL 642

Query: 347 LRAYGRARYGE--DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +   G  ++G   + LS+   M E GM+L +  Y +L+   +  G    A  + ++M   
Sbjct: 643 ID--GNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEML-R 699

Query: 405 ENCQPDSWTFSSMITICSCR-----GKVSEAEAMFNEMLEAGF 442
           +   PD      ++ IC  R     G ++EA A+ ++M   G 
Sbjct: 700 KGIIPD-----QVLCICLLRKYYELGDINEALALHDDMARRGL 737



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 83/172 (48%), Gaps = 2/172 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           ++++ +        A+ YF +  +   +  +++Y   +    K   L++A+ LF++MLD+
Sbjct: 571 VLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDK 630

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G+ PD + +++LI     +  P +A+    RM   G + D   Y+S+I  + R G V++A
Sbjct: 631 GISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLA 690

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
             L D    +    D      L++ Y   G+ +  L ++++M   G+    I
Sbjct: 691 KSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMARRGLISGTI 742



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 71/160 (44%)

Query: 147 TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           T A+ L      L     V+ Y V +    K   + +A R FD M   G++P+ + ++ L
Sbjct: 548 TEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTAL 607

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
           I     N+   +A   F  M   G  PD L Y+S+ID   + GN   A  L +R      
Sbjct: 608 IDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGM 667

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
            +D  A+++LI  +   G      ++ +EM   G+ P+ +
Sbjct: 668 ELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQV 707


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 147/308 (47%), Gaps = 3/308 (0%)

Query: 137 IILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           ++LN +        A+ +  N          + YN+ +K        + AE+L ++M  +
Sbjct: 241 VVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHK 300

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G  P+ VTF+ LIS      L   A+E  E+MP +GC P++L+Y+ ++ A+ +   +  A
Sbjct: 301 GCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKA 360

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
               +   +     D  +++TL+      G  D  + +  ++K  G  P +I+YN ++D 
Sbjct: 361 MEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDG 420

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           + +A +  +   +  EMT  GL P+  TY+++     R    E+ +  + ++++ G++ +
Sbjct: 421 LTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPT 480

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
             LYN +L        T  A ++F  M SS  C P+  T++ ++   +  G V EA  +F
Sbjct: 481 AALYNAILLGLCKRRETHNAIDLFAYMISS-GCMPNESTYTILVEGLAYEGLVKEARELF 539

Query: 435 NEMLEAGF 442
            ++   G 
Sbjct: 540 AQLCSRGV 547



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 151/318 (47%), Gaps = 1/318 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y + ++   K     +A +L D+M D+G  PD VT++ +++          A+E+ 
Sbjct: 200 DVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFL 259

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + +PS+GC+P+ ++Y+ ++     A   E A  L +   ++    +   F+ LI      
Sbjct: 260 KNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRR 319

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +  + V E+M   G  PN ++YN LL    + K+  +     + M   G  P+  +Y
Sbjct: 320 GLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSY 379

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +LL A  R    +  + +  ++K+KG    +  YNT++      G T EA E+ ++M +
Sbjct: 380 NTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEM-T 438

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S+  QPD  T+S++ +      ++ EA   F ++ + G  P   +  +++    K + T 
Sbjct: 439 SKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETH 498

Query: 464 DVVRALNRLPELGITPDD 481
           + +     +   G  P++
Sbjct: 499 NAIDLFAYMISSGCMPNE 516



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 151/353 (42%), Gaps = 43/353 (12%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVE 221
           +V++YN  +  +     LD A RL  DM    V+PD  T++TLI   C R     + A+ 
Sbjct: 133 DVMVYNAMVAGYCGAGQLDAARRLVADM---PVEPDAYTYNTLIRGLCGRGRT--SNALA 187

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE----------------- 264
             E M   GC PD +TY+ +++A  +    + A  L D   ++                 
Sbjct: 188 VLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGIC 247

Query: 265 ----------------KWRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMI 306
                            +  +PN  S  I L G  TA  ++    + EEM   G  PN++
Sbjct: 248 QEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVV 307

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           T+N L+  + R         + ++M   G +PN  +Y  LL A+ + +     +     M
Sbjct: 308 TFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELM 367

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
             +G    +  YNTLL      G  D A E+   +K  + C P   +++++I   +  GK
Sbjct: 368 VSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLK-DKGCSPVLISYNTVIDGLTKAGK 426

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             EA  + +EM   G +P++   +++     +  R ++ VR   ++ ++GI P
Sbjct: 427 TKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRP 479



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 109/247 (44%), Gaps = 6/247 (2%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   ++ ++  Y  AG  D    +  +M    V+P+  TYN L+  +    R      + 
Sbjct: 133 DVMVYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRTSNALAVL 189

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           ++M   G  P+  TY  LL A  +    +  + +  EM +KG    +  YN +L      
Sbjct: 190 EDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQE 249

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G  ++A E  +++ S   C+P++ +++ ++       +  +AE +  EM   G  PN+  
Sbjct: 250 GRVEDAMEFLKNLPSY-GCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVT 308

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 508
              LI    +    +  +  L ++P+ G TP+      LL+   +  ++++ K +E VE 
Sbjct: 309 FNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCK--QKKIHKAMEFVEL 366

Query: 509 SNSKLGY 515
             S+  Y
Sbjct: 367 MVSRGCY 373


>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
          Length = 661

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 140/279 (50%), Gaps = 1/279 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +++  +  FR   +  KA  +  +M   GV+PD   ++ +I      N    A++ F+RM
Sbjct: 364 VFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRM 423

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G +PD +T++++IDA+ + G  + A  L+D  R     +    ++ +I L G    +
Sbjct: 424 REEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRW 483

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           +G   +  EMK  G+ PN+ITY  L+D  GR+ R  +     + M  +GL P+   Y +L
Sbjct: 484 EGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHAL 543

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + AY +    +  L+V + M+  G++ S  + N+L+    +     EAF + + MK +  
Sbjct: 544 VNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKEN-G 602

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            +PD  T+++++       +  +   ++ EM+ +G  P+
Sbjct: 603 LRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPD 641



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 148/315 (46%), Gaps = 1/315 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +  + +    + A  L  +M   GVKP +  FS +++  R      KA      M 
Sbjct: 330 YSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMH 389

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  PD   Y+ MID +G+   +  A   +DR R E    D   ++TLI  +   G  D
Sbjct: 390 ASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHD 449

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + +++EM+         TYN +++ +G  +R   V+ +  EM + GL PN  TY +L+
Sbjct: 450 RAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLV 509

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YGR+   ++ +     MK  G++ S T+Y+ L+   A  G  D A  + + M+ ++  
Sbjct: 510 DVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMR-ADGL 568

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +  +   +S+I       +++EA ++   M E G  P++   T+L++   + ++ + V  
Sbjct: 569 EASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPV 628

Query: 468 ALNRLPELGITPDDR 482
               +   G  PD +
Sbjct: 629 IYEEMITSGCAPDRK 643



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 143/336 (42%), Gaps = 41/336 (12%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           ++PD   FS LIS      LP+ A+E      + G  P +   +++I + G A  V  A 
Sbjct: 217 LEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAE 276

Query: 256 GLYDR---ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            L+     A   K R    A++ L+K Y   G+      V +EM   GV P+  TY+ L+
Sbjct: 277 ALFLEFFLAGEIKPRT--RAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLV 334

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM------ 366
           D   RA R    + + KEM  +G+ P+   ++ +L  +      +   +V REM      
Sbjct: 335 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVR 394

Query: 367 -----------------------------KEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
                                        +E+G++  V  +NTL+      G  D A E+
Sbjct: 395 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIEL 454

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           F++M+ S NC   + T++ MI +     +    EAM  EM E G  PN+   T+L+  YG
Sbjct: 455 FDEMRES-NCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYG 513

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           ++ R  + V  +  +   G+ P       L+N   Q
Sbjct: 514 RSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQ 549



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 142/340 (41%), Gaps = 39/340 (11%)

Query: 178 CRDLDKAERLFDDMLDRG-VKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDA 235
            R + +AE LF +    G +KP    ++ L+    ++ +L N A +  + M   G  PD 
Sbjct: 269 ARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKN-AEQVLDEMSQCGVAPDE 327

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
            TYS ++DAY RAG  E A  L      +  +     FS ++  +   G +     V  E
Sbjct: 328 ATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLRE 387

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WN----------- 341
           M A GV+P+   YN ++DT G+          +  M + G+ P+   WN           
Sbjct: 388 MHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGR 447

Query: 342 ---------------------TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 380
                                TY  ++   G  +  E   ++  EMKE+G+  ++  Y T
Sbjct: 448 HDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTT 507

Query: 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
           L+ +    G   EA +  E MK ++  +P    + +++   + RG    A  +   M   
Sbjct: 508 LVDVYGRSGRFKEAVDCIEAMK-ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRAD 566

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           G E +  VL SLI  +G+ +R  +    L  + E G+ PD
Sbjct: 567 GLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPD 606



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 89/179 (49%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ + +  + +  +  E +  +M ++G+ P+ +T++TL+     +    +AV+  E M 
Sbjct: 470 YNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMK 529

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  P    Y ++++AY + G  + A  +    R +         ++LI  +G      
Sbjct: 530 ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIA 589

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              +V + MK  G++P++ITY  L+  + R ++  +V  IY+EM  +G +P+    A L
Sbjct: 590 EAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAML 648



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 55/262 (20%), Positives = 114/262 (43%), Gaps = 13/262 (4%)

Query: 331 MTDNGLSPNWNTYASLLRAYGRAR---YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           + ++   P+  +Y+ LL      R          +  +++E  ++    L++ L++  A 
Sbjct: 174 LREHSFLPDLASYSHLLALLLNTRDPPEAALLDRLLGDLRESRLEPDAPLFSDLISAFAR 233

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNL 446
               D A E+    ++     P S   +++I+      +V+EAEA+F E   AG  +P  
Sbjct: 234 ARLPDAALELLASAQAI-GLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRT 292

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVEC 505
               +L++ Y K     +  + L+ + + G+ PD+     L++  T+  + E  + L++ 
Sbjct: 293 RAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKE 352

Query: 506 VEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSISKDVK--KAYCNCLIDLCVNLNL 562
           +E    K   YV   +L      G+++K    L    +  V+  + + N +ID     N 
Sbjct: 353 MEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNC 412

Query: 563 LENAC----KLLELGLTLEVYT 580
           L +A     ++ E G+  +V T
Sbjct: 413 LGHAMDAFDRMREEGIEPDVVT 434


>gi|242054883|ref|XP_002456587.1| hypothetical protein SORBIDRAFT_03g038900 [Sorghum bicolor]
 gi|241928562|gb|EES01707.1| hypothetical protein SORBIDRAFT_03g038900 [Sorghum bicolor]
          Length = 655

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 116/494 (23%), Positives = 214/494 (43%), Gaps = 54/494 (10%)

Query: 78  IWVNPKSP----------RASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVL---- 123
           +W+NP  P           A++L+++ ++ R   +  L   L S + T  D+ +VL    
Sbjct: 25  VWLNPNLPTSHPLHQRHKSAAELQQRQHEDRTIDVPALVTAL-SAARTAPDLAAVLAPHR 83

Query: 124 ----RCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR 179
               R LG          +L+ + NP      L      L A   +I YN+ ++   +  
Sbjct: 84  PVSVRLLG---------ALLSRLPNPRRGVALLDLLAPDLPAPALLIPYNLLLRSSCRAG 134

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           DL  A  L  +M +RGV PD  ++STL++        + A+ +   M      PD + +S
Sbjct: 135 DLRLASGLLLEMRERGVTPDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLILFS 194

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF-DGCLNVYEEMKA 298
           ++I    R G+   A  L+ R R    R D  A++  +  Y  +    D    +  +M A
Sbjct: 195 NLIHLALRGGDAPKALALFSRLRAAGIRPDLKAYNAAVAAYCKSDLIRDAKRLLLHDMPA 254

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGE 357
            GV P+  TY+ +L  + R  R     +++  M     + P+ + +  +L AYG+     
Sbjct: 255 DGVAPDAETYSPILAALARRGRHLAAVSLFSHMRAVARVKPDLSVFNIILNAYGQLDLAR 314

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN--------CQP 409
           +   ++  M+  G+  SV  YNT+L +  D G   EA  +F+ M+S+ +         +P
Sbjct: 315 EADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFDLMRSASDGNGGAGSSVKP 374

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           +  T+++MI I     +  +A  +  +M   G +P+    ++++  + KA + D   +  
Sbjct: 375 NVVTYNTMIAIYGKSLEDEKAGKLVQDMQAIGVQPDAITYSTILSIWVKAGKLDRAAKLF 434

Query: 470 NRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 529
            +L E G   D         V+ QT       +V   E++   +    +LL + +D EG 
Sbjct: 435 EKLREAGTEIDP--------VLYQT-------MVVAYERAG-LVSQAKRLLRDLKDPEGI 478

Query: 530 FKKEATELFNSISK 543
            K+ A ++  S  +
Sbjct: 479 PKETAIKILASAGR 492



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 178/391 (45%), Gaps = 25/391 (6%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTN----PDTAALALTYFTNKLKAS---KEVILYN 169
           D   + L  + DD +  D +I+ +N+ +       A  AL  F+ +L+A+    ++  YN
Sbjct: 172 DHALTFLPLMEDDAVAPD-LILFSNLIHLALRGGDAPKALALFS-RLRAAGIRPDLKAYN 229

Query: 170 VTMKVFRKCRDLDKAERLF-DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
             +  + K   +  A+RL   DM   GV PD  T+S +++          AV  F  M +
Sbjct: 230 AAVAAYCKSDLIRDAKRLLLHDMPADGVAPDAETYSPILAALARRGRHLAAVSLFSHMRA 289

Query: 229 FG-CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                PD   ++ +++AYG+      A  L+   R          ++T++++YG AG F 
Sbjct: 290 VARVKPDLSVFNIILNAYGQLDLAREADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFG 349

Query: 288 GCLNVYEEMKAIG---------VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
             +++++ M++           VKPN++TYN ++   G++    +   + ++M   G+ P
Sbjct: 350 EAVHLFDLMRSASDGNGGAGSSVKPNVVTYNTMIAIYGKSLEDEKAGKLVQDMQAIGVQP 409

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  TY+++L  + +A   +    ++ +++E G ++   LY T++      G   +A  + 
Sbjct: 410 DAITYSTILSIWVKAGKLDRAAKLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQAKRLL 469

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
            D+K  E    ++      I I +  G++ EA  +F      G   +  V  +++  Y K
Sbjct: 470 RDLKDPEGIPKET-----AIKILASAGRLEEAAWLFRRAANTGEIKDSSVHRAMMDLYAK 524

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
            +R  +V+   + + +LG  PD       +N
Sbjct: 525 NRRHRNVIEVFDEMRKLGQLPDSETIATAMN 555



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 111/223 (49%), Gaps = 8/223 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  + ++ K  + +KA +L  DM   GV+PD +T+ST++S        ++A + FE
Sbjct: 376 VVTYNTMIAIYGKSLEDEKAGKLVQDMQAIGVQPDAITYSTILSIWVKAGKLDRAAKLFE 435

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGT 282
           ++   G + D + Y +M+ AY RAG V  A  L    R+ K   DP      T IK+  +
Sbjct: 436 KLREAGTEIDPVLYQTMVVAYERAGLVSQAKRLL---RDLK---DPEGIPKETAIKILAS 489

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           AG  +    ++      G   +   +  ++D   + +R   V  ++ EM   G  P+  T
Sbjct: 490 AGRLEEAAWLFRRAANTGEIKDSSVHRAMMDLYAKNRRHRNVIEVFDEMRKLGQLPDSET 549

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            A+ + AYG+ +  +   ++Y+ M+E+G   S  ++  ++++ 
Sbjct: 550 IATAMNAYGKLKDFDKAAALYQAMREEGCVFSDRVHFQMISLL 592



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 133/312 (42%), Gaps = 16/312 (5%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDM--- 191
           IILN     D A  A   F +  +A     V+ YN  ++V+       +A  LFD M   
Sbjct: 302 IILNAYGQLDLAREADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFDLMRSA 361

Query: 192 ------LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
                     VKP+ VT++T+I+    +    KA +  + M + G  PDA+TYS+++  +
Sbjct: 362 SDGNGGAGSSVKPNVVTYNTMIAIYGKSLEDEKAGKLVQDMQAIGVQPDAITYSTILSIW 421

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
            +AG ++ A  L+++ R     IDP  + T++  Y  AG       +  ++K     P  
Sbjct: 422 VKAGKLDRAAKLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQAKRLLRDLK----DPEG 477

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           I     +  +  A R  +   +++   + G   + + + +++  Y + R   + + V+ E
Sbjct: 478 IPKETAIKILASAGRLEEAAWLFRRAANTGEIKDSSVHRAMMDLYAKNRRHRNVIEVFDE 537

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M++ G         T +     +   D+A  +++ M+  E C         MI++   + 
Sbjct: 538 MRKLGQLPDSETIATAMNAYGKLKDFDKAAALYQAMR-EEGCVFSDRVHFQMISLLGAQK 596

Query: 426 KVSEAEAMFNEM 437
                E +  E+
Sbjct: 597 DFKALEVLVGEL 608


>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
 gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
 gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
          Length = 661

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 140/279 (50%), Gaps = 1/279 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +++  +  FR   +  KA  +  +M   GV+PD   ++ +I      N    A++ F+RM
Sbjct: 364 VFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRM 423

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G +PD +T++++IDA+ + G  + A  L+D  R     +    ++ +I L G    +
Sbjct: 424 REEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRW 483

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           +G   +  EMK  G+ PN+ITY  L+D  GR+ R  +     + M  +GL P+   Y +L
Sbjct: 484 EGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHAL 543

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + AY +    +  L+V + M+  G++ S  + N+L+    +     EAF + + MK +  
Sbjct: 544 VNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKEN-G 602

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            +PD  T+++++       +  +   ++ EM+ +G  P+
Sbjct: 603 LRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPD 641



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 148/315 (46%), Gaps = 1/315 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +  + +    + A  L  +M   GVKP +  FS +++  R      KA      M 
Sbjct: 330 YSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMH 389

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  PD   Y+ MID +G+   +  A   +DR R E    D   ++TLI  +   G  D
Sbjct: 390 ASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHD 449

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + +++EM+         TYN +++ +G  +R   V+ +  EM + GL PN  TY +L+
Sbjct: 450 RAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLV 509

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YGR+   ++ +     MK  G++ S T+Y+ L+   A  G  D A  + + M+ ++  
Sbjct: 510 DVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMR-ADGL 568

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +  +   +S+I       +++EA ++   M E G  P++   T+L++   + ++ + V  
Sbjct: 569 EASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPV 628

Query: 468 ALNRLPELGITPDDR 482
               +   G  PD +
Sbjct: 629 IYEEMITSGCAPDRK 643



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 143/336 (42%), Gaps = 41/336 (12%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           ++PD   FS LIS      LP+ A+E      + G  P +   +++I + G A  V  A 
Sbjct: 217 LEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAE 276

Query: 256 GLYDR---ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            L+     A   K R    A++ L+K Y   G+      V +EM   GV P+  TY+ L+
Sbjct: 277 ALFLEFFLAGEIKPRT--RAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLV 334

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM------ 366
           D   RA R    + + KEM  +G+ P+   ++ +L  +      +   +V REM      
Sbjct: 335 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVR 394

Query: 367 -----------------------------KEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
                                        +E+G++  V  +NTL+      G  D A E+
Sbjct: 395 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIEL 454

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           F++M+ S NC   + T++ MI +     +    EAM  EM E G  PN+   T+L+  YG
Sbjct: 455 FDEMRES-NCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYG 513

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           ++ R  + V  +  +   G+ P       L+N   Q
Sbjct: 514 RSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQ 549



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 142/340 (41%), Gaps = 39/340 (11%)

Query: 178 CRDLDKAERLFDDMLDRG-VKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDA 235
            R + +AE LF +    G +KP    ++ L+    ++ +L N A +  + M   G  PD 
Sbjct: 269 ARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKN-AEQVLDEMSQCGVAPDE 327

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
            TYS ++DAY RAG  E A  L      +  +     FS ++  +   G +     V  E
Sbjct: 328 ATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLRE 387

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WN----------- 341
           M A GV+P+   YN ++DT G+          +  M + G+ P+   WN           
Sbjct: 388 MHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGR 447

Query: 342 ---------------------TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 380
                                TY  ++   G  +  E   ++  EMKE+G+  ++  Y T
Sbjct: 448 HDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTT 507

Query: 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
           L+ +    G   EA +  E MK ++  +P    + +++   + RG    A  +   M   
Sbjct: 508 LVDVYGRSGRFKEAVDCIEAMK-ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRAD 566

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           G E +  VL SLI  +G+ +R  +    L  + E G+ PD
Sbjct: 567 GLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPD 606



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 89/179 (49%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ + +  + +  +  E +  +M ++G+ P+ +T++TL+     +    +AV+  E M 
Sbjct: 470 YNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMK 529

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  P    Y ++++AY + G  + A  +    R +         ++LI  +G      
Sbjct: 530 ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIA 589

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              +V + MK  G++P++ITY  L+  + R ++  +V  IY+EM  +G +P+    A L
Sbjct: 590 EAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAML 648



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 116/262 (44%), Gaps = 13/262 (4%)

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDT---LSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           + ++   P+  +Y+ LL +    R   D      +  +++E  ++    L++ L++  A 
Sbjct: 174 LREHSFLPDLASYSHLLASLLNTRDPPDAALLDRLLGDLRESRLEPDAPLFSDLISAFAR 233

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNL 446
               D A E+    ++     P S   +++I+      +V+EAEA+F E   AG  +P  
Sbjct: 234 ARLPDAALELLASAQAI-GLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRT 292

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVEC 505
               +L++ Y K     +  + L+ + + G+ PD+     L++  T+  + E  + L++ 
Sbjct: 293 RAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKE 352

Query: 506 VEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSISKDVK--KAYCNCLIDLCVNLNL 562
           +E    K   YV   +L      G+++K    L    +  V+  + + N +ID     N 
Sbjct: 353 MEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNC 412

Query: 563 LENAC----KLLELGLTLEVYT 580
           L +A     ++ E G+  +V T
Sbjct: 413 LGHAMDAFDRMREEGIEPDVVT 434


>gi|403366299|gb|EJY82949.1| hypothetical protein OXYTRI_19434 [Oxytricha trifallax]
          Length = 1420

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 178/363 (49%), Gaps = 20/363 (5%)

Query: 145 PDTA--ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVT 202
           PD+A  A A+   +N      + I +N  +K   + + L  A  +F+ M  + +KP++VT
Sbjct: 562 PDSAKNAPAVVNSSNHHFMRPDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVT 621

Query: 203 FSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN----------- 250
           +++LI +C R N L N A +    M      PD  TYS++I    RA N           
Sbjct: 622 YNSLIDACVRCNRL-NSAWQLLSEMQQNNIVPDNFTYSTLIKGI-RAENQSQNGISNPMD 679

Query: 251 VEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           +E AF L ++ +     + P+   ++ LI       + +  + V++EM+   +KP+ +TY
Sbjct: 680 LEKAFALLEQMKQSNGGVKPDEILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTY 739

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
             L+   G A +      ++K+M DN L PN  TY  L+ A  +    E  + V+  MK 
Sbjct: 740 GILIKAYGSANQLDNAFFVFKKMKDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETMKR 799

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G+QL+  ++ TL+   A     D+A E+++ MK  +  +P++ TF+S+I  C     + 
Sbjct: 800 DGVQLNTIIFTTLIKGFAKSFKLDQALEVYQIMKMDDKIKPNNVTFNSLIDCCIRCNSIK 859

Query: 429 EAEAMFNEMLE--AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
           +A  +F EM +  +  +P+L   +++I+ + + +     +  LN + +  I  D+     
Sbjct: 860 KAMEIFEEMKQPISHTKPDLITYSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLYNS 919

Query: 487 LLN 489
           LL+
Sbjct: 920 LLD 922



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 163/330 (49%), Gaps = 9/330 (2%)

Query: 166  ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
            ILYN  +    +  D+++A  +F +M    +KP +VT+  LI      N  + A   F++
Sbjct: 702  ILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTYGILIKAYGSANQLDNAFFVFKK 761

Query: 226  MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
            M      P+++TY  +IDA  +   +E A  +++  + +  +++   F+TLIK +  +  
Sbjct: 762  MKDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTIIFTTLIKGFAKSFK 821

Query: 286  FDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD--NGLSPNWNT 342
             D  L VY+ MK    +KPN +T+N+L+D   R     +   I++EM    +   P+  T
Sbjct: 822  LDQALEVYQIMKMDDKIKPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQPISHTKPDLIT 881

Query: 343  YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
            Y+++++ + R +  +  L +  +M++  +     LYN+LL  C      + A +++++M+
Sbjct: 882  YSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLYNSLLDGCCKANEIEMALKVYKNME 941

Query: 403  SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
              +  +P + T+S +I I   +  + +A  +  EM + G  P L V T L+Q   K+++ 
Sbjct: 942  ILK-IKPSNVTYSILIKIYGKQRNLPKALGVLEEMKKDGIRPGLIVYTCLLQTCIKSRQL 1000

Query: 463  DDVVRALNRLPELGITPDD-----RFCGCL 487
                +  + +   GI  D         GCL
Sbjct: 1001 KTAEQLFHDMRIQGIRGDQLTYQTMINGCL 1030



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 114/224 (50%), Gaps = 3/224 (1%)

Query: 165  VILYNVTMKVFRKCRDLDKAERLFDDM-LDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
             I++   +K F K   LD+A  ++  M +D  +KP+NVTF++LI C    N   KA+E F
Sbjct: 806  TIIFTTLIKGFAKSFKLDQALEVYQIMKMDDKIKPNNVTFNSLIDCCIRCNSIKKAMEIF 865

Query: 224  ERM--PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            E M  P     PD +TYS+MI  + R  N++ A  + +         D   +++L+    
Sbjct: 866  EEMKQPISHTKPDLITYSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLYNSLLDGCC 925

Query: 282  TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             A   +  L VY+ M+ + +KP+ +TY+ L+   G+ +   +   + +EM  +G+ P   
Sbjct: 926  KANEIEMALKVYKNMEILKIKPSNVTYSILIKIYGKQRNLPKALGVLEEMKKDGIRPGLI 985

Query: 342  TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
             Y  LL+   ++R  +    ++ +M+ +G++     Y T++  C
Sbjct: 986  VYTCLLQTCIKSRQLKTAEQLFHDMRIQGIRGDQLTYQTMINGC 1029



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 107/553 (19%), Positives = 227/553 (41%), Gaps = 111/553 (20%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ ++  +K + + + L +A  +   M +RG+KPD V ++++I     NN   KA   +
Sbjct: 365 DMMTFSCMIKGYCRAQRLPQALNVLSIMKERGIKPDEVLYNSIIDGCSKNNQIAKAFLLY 424

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL---IKLY 280
           + M   G  P  +T++S+ID   R+GN + A+ + ++ + ++ + D   +STL   IK  
Sbjct: 425 DEMLGEGVTPTTITFNSLIDCCVRSGNQDQAWRVLEQMKEKQVKPDNYTYSTLFKGIKSE 484

Query: 281 GTAGNFDGCLNVYEEMK-AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM-------- 331
               + +    +Y +++ +    P+ I +N LLD     K+  +   ++K++        
Sbjct: 485 NQRQDLEKAFVLYNQLQNSNDFTPDEILFNVLLDACINCKQLDRAVELFKQLKPQSQPQI 544

Query: 332 -------TDNGLS------------------------PNWNTYASLLRAYGRARYGEDTL 360
                   DN LS                        P+  ++ ++++   + +  +   
Sbjct: 545 QVSNTDDADNSLSLEDSPDSAKNAPAVVNSSNHHFMRPDEISFNTIIKGCAQEKKLQLAF 604

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT- 419
            ++  MK + ++ +   YN+L+  C      + A+++  +M+ + N  PD++T+S++I  
Sbjct: 605 EMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSAWQLLSEMQQN-NIVPDNFTYSTLIKG 663

Query: 420 ----------------------------------------------ICSCRGKVSEAEAM 433
                                                          C     V+ A A+
Sbjct: 664 IRAENQSQNGISNPMDLEKAFALLEQMKQSNGGVKPDEILYNCLIDACVRFHDVNRAVAV 723

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           F EM  +  +P+      LI+ YG A + D+      ++ +  + P+    GCL++   +
Sbjct: 724 FQEMQFSNIKPSSVTYGILIKAYGSANQLDNAFFVFKKMKDNCLIPNSVTYGCLIDACVK 783

Query: 494 TPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG---DFK-KEATELFNSISKDVK-- 546
             + E   ++ E +++   +L  ++   L    I+G    FK  +A E++  +  D K  
Sbjct: 784 NNQIERAMEVFETMKRDGVQLNTIIFTTL----IKGFAKSFKLDQALEVYQIMKMDDKIK 839

Query: 547 --KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSP--TQWSLHLKSLSLGAA 602
                 N LID C+  N ++ A ++ E     E+   I    P    +S  +K       
Sbjct: 840 PNNVTFNSLIDCCIRCNSIKKAMEIFE-----EMKQPISHTKPDLITYSTMIKGFCREKN 894

Query: 603 LTALHIWINDLSK 615
           +    I +ND+ K
Sbjct: 895 IQQALIMLNDMEK 907



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 138/353 (39%), Gaps = 85/353 (24%)

Query: 214 NLPNKAVEWFERMPSFGCDPDALTY----SSMIDAYGRAGNVEMAFGLYDR----ARNEK 265
           N    A+++F ++       +  TY    + M+D+  +A   E A  +Y++    ++++ 
Sbjct: 302 NQTQTALQYFHQLQQTSQAQNDPTYYQTVNQMLDSLLKAELFEEAEQIYNKVFTLSKDQP 361

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
             +D   FS +IK Y  A      LNV   MK  G+KP+ + YN+++D   +  +  +  
Sbjct: 362 NCMDMMTFSCMIKGYCRAQRLPQALNVLSIMKERGIKPDEVLYNSIIDGCSKNNQIAKAF 421

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM-------------- 371
            +Y EM   G++P   T+ SL+    R+   +    V  +MKEK +              
Sbjct: 422 LLYDEMLGEGVTPTTITFNSLIDCCVRSGNQDQAWRVLEQMKEKQVKPDNYTYSTLFKGI 481

Query: 372 -----------------QLSVT--------LYNTLLAMCADVGYTDEAFEIFEDMK---- 402
                            QL  +        L+N LL  C +    D A E+F+ +K    
Sbjct: 482 KSENQRQDLEKAFVLYNQLQNSNDFTPDEILFNVLLDACINCKQLDRAVELFKQLKPQSQ 541

Query: 403 ----------------------SSENC------------QPDSWTFSSMITICSCRGKVS 428
                                 S++N             +PD  +F+++I  C+   K+ 
Sbjct: 542 PQIQVSNTDDADNSLSLEDSPDSAKNAPAVVNSSNHHFMRPDEISFNTIIKGCAQEKKLQ 601

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
            A  MFN M     +PN     SLI    +  R +   + L+ + +  I PD+
Sbjct: 602 LAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSAWQLLSEMQQNNIVPDN 654


>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
          Length = 642

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 145/313 (46%), Gaps = 2/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  M        +D AER+F+ M    +KPD VT++T+I          KA+E    M 
Sbjct: 207 YNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDME 266

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G + D +TY +MI A     +      LY     +  ++ P+AFS +I      G  +
Sbjct: 267 TRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLN 326

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V+E M   G KPN+  Y  L+D   ++        +   M D G  P+  TY+ ++
Sbjct: 327 EGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 386

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +    E+ L  +   +  G+ ++   Y++L+      G  DEA  +FE+M S + C
Sbjct: 387 NGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEM-SEKGC 445

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEM-LEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             DS+ ++++I   +   KV EA A+F  M  E G +  ++  T L+    K  R ++ +
Sbjct: 446 TRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEAL 505

Query: 467 RALNRLPELGITP 479
           +  + + + GITP
Sbjct: 506 KLWDMMIDKGITP 518



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 165/361 (45%), Gaps = 28/361 (7%)

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           Y S++D    A +V+    +    +  ++ +  +A + LIK +G  G  +  L V+ +MK
Sbjct: 137 YVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMK 196

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
             G++P + TYN L++ +  A      + +++ M    + P+  TY ++++ Y +A   +
Sbjct: 197 ENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQ 256

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF----EIFEDMKSSENCQPDSWT 413
             +   R+M+ +G +     Y T++  C    Y D  F     ++++M   +  Q     
Sbjct: 257 KAMEKLRDMETRGHEADKITYMTMIQAC----YADSDFGSCVALYQEM-DEKGIQVPPHA 311

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           FS +I      GK++E   +F  M+  G +PN+ + T LI  Y K+   +D +R L+R+ 
Sbjct: 312 FSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 371

Query: 474 ELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL--GYVVKLLLEEQDIEGDFK 531
           + G  PD      ++N + +      G++ E ++  ++    G  +  +     I+G  K
Sbjct: 372 DEGFKPDVVTYSVVVNGLCKN-----GRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGK 426

Query: 532 K----EATELFNSISKD--VKKAYC-NCLIDLCVNLNLLENACKLL-----ELGLTLEVY 579
                EA  LF  +S+    + +YC N LID       ++ A  L      E G    VY
Sbjct: 427 AGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVY 486

Query: 580 T 580
           T
Sbjct: 487 T 487


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 154/317 (48%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D+++A  +F + +++G K   + ++TL+       L  +A++  + M   GC PD  TY+
Sbjct: 371 DMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYN 430

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +++   + G +  A G+ + A  +    D   F+TLI  Y    N D  + + + M + 
Sbjct: 431 LVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSH 490

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G+ P++ITYN LL+ + +A++   V   +K M + G +PN  TY  L+ ++ + R   + 
Sbjct: 491 GITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEA 550

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           + +++EMK +G+   +    TL+      G  D+A+E+F  ++        +  F+ MI 
Sbjct: 551 MELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMIN 610

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
               +  VS AE +F++M  +   P+ +    +I  Y K    D     L      G+ P
Sbjct: 611 AFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVP 670

Query: 480 DDRFCGCLLNVMTQTPK 496
               CG +LN +  T +
Sbjct: 671 SFTTCGKVLNCLCVTHR 687



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 145/333 (43%), Gaps = 36/333 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ +N  + V  K  ++ ++E+LF  ++ RGV P+  TF+  I         ++A    
Sbjct: 215 DILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLL 274

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E + S G  PD ++Y+++I  + +   +  A     +  N                    
Sbjct: 275 ESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNS------------------- 315

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                           GV+PN  TYN +++   +A        I ++    G  P+  TY
Sbjct: 316 ----------------GVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTY 359

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           +SL+            ++V+ E  EKG + S+ LYNTL+   +  G   +A ++ +DM  
Sbjct: 360 SSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDM-M 418

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
              C PD WT++ ++      G +S+A  + N+ +  G  P++F   +LI  Y K +  D
Sbjct: 419 EHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMD 478

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
             +  L+ +   GITPD      LLN + +  K
Sbjct: 479 KAIEILDTMLSHGITPDVITYNTLLNGLCKARK 511



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 178/404 (44%), Gaps = 31/404 (7%)

Query: 92  EKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALA 151
           E +Y+T  N   K     ++     D +F     + D+F       ++N + N      A
Sbjct: 321 EFTYNTIINGFCKAGMMQNADKILRDAMFKGF--IPDEFTYSS---LINGLCNDGDMNRA 375

Query: 152 LTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS- 208
           +  F   ++      +ILYN  +K   K   + +A +L  DM++ G  PD  T++ +++ 
Sbjct: 376 MAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNG 435

Query: 209 ------CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
                  +  N + N A+       + GC PD  T++++ID Y +  N++ A  + D   
Sbjct: 436 LCKMGCLSDANGILNDAI-------AKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTML 488

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
           +     D   ++TL+     A   D  ++ ++ M   G  PN+ITYN L+++  + ++  
Sbjct: 489 SHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVS 548

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE----DTLSVYREMKEKGMQLSVTLY 378
           +   ++KEM   GL+P+  T  +L+   G    GE      L V  E KE     S  ++
Sbjct: 549 EAMELFKEMKTRGLTPDIVTLCTLI--CGLCSNGELDKAYELFVTIE-KEYKFSYSTAIF 605

Query: 379 NTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           N ++ A C  +     A ++F  M  S+ C PD++T+  MI      G +  A     E 
Sbjct: 606 NIMINAFCXKLN-VSMAEKLFHKMGGSD-CAPDNYTYRVMIDSYCKTGNIDLAHTFLLEN 663

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +  G  P+      ++ C     R  + V  +N + + GI P++
Sbjct: 664 ISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEE 707



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 147/306 (48%), Gaps = 5/306 (1%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           CR   +D+A RL + ++  G+ PD ++++TLI     ++   +A  +  +M + G +P+ 
Sbjct: 262 CRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNE 321

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
            TY+++I+ + +AG ++ A  +   A  + +  D   +S+LI      G+ +  + V+ E
Sbjct: 322 FTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYE 381

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
               G K ++I YN L+  + +     Q   + K+M ++G SP+  TY  ++    +   
Sbjct: 382 AMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGC 441

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
             D   +  +   KG    +  +NTL+         D+A EI + M  S    PD  T++
Sbjct: 442 LSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTM-LSHGITPDVITYN 500

Query: 416 SMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +++  +C  R K+      F  MLE G  PN+     LI+ + K ++  + +     +  
Sbjct: 501 TLLNGLCKAR-KLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKT 559

Query: 475 LGITPD 480
            G+TPD
Sbjct: 560 RGLTPD 565



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 140/313 (44%), Gaps = 1/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  M +  +     +A +++  M D G+ PD  T +  +    +   P  A+     MP
Sbjct: 114 YNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMP 173

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC+ +A++Y ++I  + +      A+ L+D    +    D   F+ LI +    GN  
Sbjct: 174 GQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQ 233

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++ ++   GV PN+ T+N  +  + R     +   + + +   GL+P+  +Y +L+
Sbjct: 234 ESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLI 293

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             + +     +      +M   G++ +   YNT++      G    A +I  D    +  
Sbjct: 294 CGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRD-AMFKGF 352

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD +T+SS+I      G ++ A A+F E +E GF+ ++ +  +L++   K       ++
Sbjct: 353 IPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQ 412

Query: 468 ALNRLPELGITPD 480
            +  + E G +PD
Sbjct: 413 LMKDMMEHGCSPD 425



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 133/291 (45%), Gaps = 8/291 (2%)

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF-GCDPDALTYSSMIDAYGRAGN 250
           ++R ++P +V      +  R  N P  A++ F ++ +  G      TY  MI+  G  G 
Sbjct: 1   MNRALQPKHVA-----AVIRYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGK 55

Query: 251 VE-MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
            E M   L +  +N   ++    +  +++ YG  G     +NV+E M     +P++ +YN
Sbjct: 56  FEAMEDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYN 115

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            +++ +       Q   +Y  M D G+ P+  T+   ++++         L +   M  +
Sbjct: 116 AIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQ 175

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G + +   Y  +++         EA+ +F++M     C PD  TF+ +I +   +G V E
Sbjct: 176 GCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGIC-PDILTFNKLIHVLCKKGNVQE 234

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +E +F+++++ G  PNLF     IQ   +    D+  R L  +   G+TPD
Sbjct: 235 SEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPD 285



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 125/274 (45%), Gaps = 5/274 (1%)

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +AV  FERM  + C+P   +Y+++++     G    A  +Y R ++    I P+ ++  I
Sbjct: 94  EAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKD--IGIYPDVYTHTI 151

Query: 278 KL--YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           ++  +   G     L +   M   G + N ++Y  ++    +     +   ++ EM   G
Sbjct: 152 RMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQG 211

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           + P+  T+  L+    +    +++  ++ ++ ++G+  ++  +N  +      G  DEA 
Sbjct: 212 ICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAA 271

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            + E +  SE   PD  +++++I       K+ EAE   ++M+ +G EPN F   ++I  
Sbjct: 272 RLLESI-VSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIING 330

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + KA    +  + L      G  PD+     L+N
Sbjct: 331 FCKAGMMQNADKILRDAMFKGFIPDEFTYSSLIN 364


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 151/347 (43%), Gaps = 6/347 (1%)

Query: 136 VIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR--DLDKAERLFDDMLD 193
           VI L  M+    A  AL  F   L A  +  +      +   CR   L +A RL   M  
Sbjct: 54  VIFLCKMSR---ATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTA 110

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
                D  T+S L+          KA+E F  M   GC PD + Y+ +I   G+ G V+ 
Sbjct: 111 HAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDE 170

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  L +    +    D   ++ +I +  + G ++   + +  MK     P+++TYN LL+
Sbjct: 171 ALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLN 230

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
            + + +R  +   ++ EM  N   P+  T+ +L+    +A   ED L     + + G   
Sbjct: 231 GLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVP 290

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           +  +YN L++     G  D+ +E+F+DM    +C PDS T++ ++   S RG  S A  +
Sbjct: 291 NSYIYNALISGFCRSGQVDKGYELFQDMIEC-SCFPDSITYTILVLGFSRRGHTSMAMEL 349

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             EM+  G  P L     LI+    A + +D       +   G  PD
Sbjct: 350 LQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPD 396



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 143/318 (44%), Gaps = 2/318 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRG-VKPDNVTFSTLISCARMNNLPNKAVEW 222
           +V+ YN  +  + K  D D+A  +F  +   G  KP+ V+F TL+      +    A+  
Sbjct: 10  DVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAV 69

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F+ M   G   D    +++I    R G +  A  L        + +D   +S L+   G 
Sbjct: 70  FQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGK 129

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           AG     L V+  M+  G  P+ + YN L+  +G+  +  +   + ++M   G+ P+  T
Sbjct: 130 AGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRT 189

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y  ++         E   S +  MK +     V  YNTLL     +  TDEA ++F++M+
Sbjct: 190 YNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQ 249

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           +++ C PD  TF ++I   +  G++ +A      +++ G  PN ++  +LI  + ++ + 
Sbjct: 250 ANK-CMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQV 308

Query: 463 DDVVRALNRLPELGITPD 480
           D        + E    PD
Sbjct: 309 DKGYELFQDMIECSCFPD 326



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 134/290 (46%), Gaps = 11/290 (3%)

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDG 288
           C PD + Y+++I  Y +AG+ + A  ++ R + E     PNA  F TL+           
Sbjct: 7   CAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQE-GSCKPNAVSFDTLVIFLCKMSRATD 65

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L V++EM   G++ ++   N L+    R     Q + +   MT +    +  TY+ L+ 
Sbjct: 66  ALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMD 125

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A G+A      L V+  M++ G      +YN L++     G  DEA E+ EDM + +   
Sbjct: 126 ALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDM-NRKGIM 184

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD  T++ +I + S  G+  +A + F  M      P++    +L+    K +RTD+    
Sbjct: 185 PDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDL 244

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS--KLGYV 516
            + +      PD    G L++ + +      G++ + +E+S    K+G+V
Sbjct: 245 FDEMQANKCMPDLTTFGTLIDTLAKA-----GRMEDALEQSARLVKMGHV 289



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 140/314 (44%), Gaps = 7/314 (2%)

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFG-CDPDALTYSSMIDAYGRAGNVEMAFG 256
           PD V ++TLI+        ++A++ F R+   G C P+A+++ +++    +      A  
Sbjct: 9   PDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALA 68

Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           ++        + D N  +TLI      G       +   M A     ++ TY+ L+D +G
Sbjct: 69  VFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALG 128

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +A R  +   ++  M   G  P+   Y  L+   G+    ++ L +  +M  KG+     
Sbjct: 129 KAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCR 188

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            YN ++ + +  G  ++A+  F  MK  ++  PD  T+++++       +  EA  +F+E
Sbjct: 189 TYNIVIDVLSSCGRYEKAYSFFGMMKRRKH-SPDVVTYNTLLNGLKKLRRTDEACDLFDE 247

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           M      P+L    +LI    KA R +D +    RL ++G  P+      L++   ++ +
Sbjct: 248 MQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQ 307

Query: 497 EELG-----KLVEC 505
            + G      ++EC
Sbjct: 308 VDKGYELFQDMIEC 321


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 166/364 (45%), Gaps = 23/364 (6%)

Query: 112 CSATE-DDVFSVLR-CLGDDFLEQDCVI--ILNNMTNPDTAALALTYFTNKLKAS--KEV 165
           CSA + +  FSV+R  +G  F+        +LN + N     LA   F    +     +V
Sbjct: 459 CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADV 518

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
             Y + +  F K   +++A + F++M + G  P+ VT++ LI         + A E FE 
Sbjct: 519 YTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 578

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID--------------PN 271
           M S GC P+ +TYS++ID + +AG VE A  +++R    K   D              PN
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPN 638

Query: 272 A--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
              +  L+  +  +   +    + + M   G +PN I Y+ L+D + +  +  + + +  
Sbjct: 639 VVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKT 698

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           EM+++G      TY+SL+  Y + +  +    V  +M E     +V +Y  ++     VG
Sbjct: 699 EMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 758

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
            TDEA+++ + M   + CQP+  T+++MI      GK+     +   M   G  PN    
Sbjct: 759 KTDEAYKLMQ-MMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 817

Query: 450 TSLI 453
             LI
Sbjct: 818 RVLI 821



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 179/414 (43%), Gaps = 21/414 (5%)

Query: 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
           C  LD AE+ + +ML  GV  + +  S+   C        KA      M   G  PD  T
Sbjct: 426 CDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 485

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           YS +++    A  +E+AF L++  +      D   ++ ++  +  AG  +     + EM+
Sbjct: 486 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 545

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
            +G  PN++TY  L+    +AK+      +++ M   G  PN  TY++L+  + +A   E
Sbjct: 546 EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVE 605

Query: 358 DTLSVYREM----------------KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
               ++  M                 +   + +V  Y  LL         +EA ++ + M
Sbjct: 606 KACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAM 665

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
            S E C+P+   + ++I      GK+ EA+ +  EM E GF   L+  +SLI  Y K +R
Sbjct: 666 -SMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKR 724

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV-KL 519
            D   + L+++ E    P+      +++ + +  K +E  KL++ +E+   +   V    
Sbjct: 725 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTA 784

Query: 520 LLEEQDIEGDFKKEATELFNSISKDVKKAYCN--CLIDLCVNLNLLENACKLLE 571
           +++   + G  +     L    SK V   Y     LID C     L+ A  LLE
Sbjct: 785 MIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 838



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 133/313 (42%), Gaps = 3/313 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y+  +    K   LD+A+ +  +M + G      T+S+LI         + A +   +
Sbjct: 675 IVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSK 734

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M    C P+ + Y+ MID   + G  + A+ L      +  + +   ++ +I  +G  G 
Sbjct: 735 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGK 794

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            + CL + E M + GV PN +TY  L+D   +         + +EM       +   Y  
Sbjct: 795 IETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRK 854

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++  + +     ++L +  E+ +      +++Y  L+         + A  + E++ +  
Sbjct: 855 VIEGFNKEFI--ESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFS 912

Query: 406 NCQPD-SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               D S T++S+I       KV  A  +F+EM + G  P +    SLI+   +  +  +
Sbjct: 913 ATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISE 972

Query: 465 VVRALNRLPELGI 477
            +  L+ +  + I
Sbjct: 973 ALLLLDFISHMEI 985



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 39/225 (17%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V++Y   +    K    D+A +L   M ++G +P+ VT++ +I    M       +E  E
Sbjct: 744 VVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLE 803

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           RM S G  P+ +TY  +ID   + G +++A  L +  +   W      +  +I+  G   
Sbjct: 804 RMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIE--GFNK 861

Query: 285 NFDGCLNVYEEMKAIGVKP----------NMI---------------------------T 307
            F   L + +E+      P          N+I                           T
Sbjct: 862 EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSST 921

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           YN+L++++  A +      ++ EMT  G+ P   ++ SL++   R
Sbjct: 922 YNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFR 966



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/446 (19%), Positives = 159/446 (35%), Gaps = 87/446 (19%)

Query: 117 DDVFS-----VLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVT 171
           DDVF       LR   +   E   + +L  +  P        +   ++       +YN  
Sbjct: 112 DDVFGRKSQKFLRQFREKLSESLVIEVLRLIARPSAVISFFVWAGRQIGYKHTAPVYNAL 171

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK----AVEWFERMP 227
           + +  +    D  E++ ++ L +    D   F   ++     +  N     A+E   R+ 
Sbjct: 172 VDLIVR----DDDEKVPEEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLK 227

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMA----------------FGL----YDRARNEKWR 267
            F   P   TY+ +I A+ +A  ++ A                F L    Y   +  KWR
Sbjct: 228 DFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWR 287

Query: 268 ------------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
                        D   ++ LI     A  F+  ++    M+A    PN++TY+ LL   
Sbjct: 288 EALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC 347

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
              K+  + K +   M   G  P+   + SL+ AY  +        + ++M + G     
Sbjct: 348 LNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGY 407

Query: 376 TLYNTLL-AMCAD----------------------------------------VGYTDEA 394
            +YN L+ ++C D                                         G  ++A
Sbjct: 408 VVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKA 467

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           F +  +M   +   PD+ T+S ++       K+  A  +F EM   G   +++  T ++ 
Sbjct: 468 FSVIREM-IGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVD 526

Query: 455 CYGKAQRTDDVVRALNRLPELGITPD 480
            + KA   +   +  N + E+G TP+
Sbjct: 527 SFCKAGLIEQARKWFNEMREVGCTPN 552


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 164/348 (47%), Gaps = 7/348 (2%)

Query: 137 IILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I++N+  +      A + F    KL    ++I Y   ++       + ++    D ++ +
Sbjct: 89  ILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQ 148

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G+K D+V++ TLI+          A+    ++    C PD + Y+++ID   +   V  A
Sbjct: 149 GIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDA 208

Query: 255 FGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
           F LY     +  R+ PN   +++LI  +   G  D    +  EM    V PN+ T+N L+
Sbjct: 209 FDLYCEMFEK--RVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLV 266

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           D + +  +  + K++   M   G+ P+  TY +L+  Y   +      +V+  M + G+ 
Sbjct: 267 DGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVT 326

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
             V  Y+ +++  + +   DEA ++FE M+ +EN  PD   +SS+I      G+++ A  
Sbjct: 327 CDVHSYSVMISGLSKMKMLDEAMDLFEGMR-NENVIPDVVAYSSLIDGLCKSGRINSALK 385

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             +EM + G  PN+   TSLI    K+ + D  +  L ++ + GI  +
Sbjct: 386 YVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQAN 433



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 119/259 (45%), Gaps = 1/259 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           + +A+ L   M+  GV PD  T++ L+    +     KA   F  M   G   D  +YS 
Sbjct: 275 MREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSV 334

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           MI    +   ++ A  L++  RNE    D  A+S+LI     +G  +  L   +EM   G
Sbjct: 335 MISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRG 394

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
             PN+ITY +L+D + ++ +  +   + K++ D G+  N  TY  L+    +     D  
Sbjct: 395 QPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQ 454

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            V++++  KG  + V  Y+ ++         DEA  +   M+  + C PD+  + ++I  
Sbjct: 455 KVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKME-DKGCVPDAIAYETIINA 513

Query: 421 CSCRGKVSEAEAMFNEMLE 439
              +    +AE +  EM++
Sbjct: 514 FFEKDMNDKAEKLLREMID 532



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 142/307 (46%), Gaps = 3/307 (0%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDP 233
           F    +L+ A   F+ ML     P  + F  ++ S  +  + P   +  F+RM   G   
Sbjct: 24  FHSLPNLNDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYP-IVIHLFQRMELHGIQS 82

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           + +T + +I++Y     +  AF ++ +     ++ D   ++TLI+     G     LN +
Sbjct: 83  NYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFH 142

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
           + + + G+K + ++Y  L++ + +  +      + +++      P+   Y +++    + 
Sbjct: 143 DRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKD 202

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
           +   D   +Y EM EK +  +V  Y +L+     VG  D+AF +  +M   +N  P+  T
Sbjct: 203 KLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEM-VLKNVNPNVCT 261

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           F++++      GK+ EA+++   M++ G  P++F   +L+  Y   +         N + 
Sbjct: 262 FNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMA 321

Query: 474 ELGITPD 480
           ++G+T D
Sbjct: 322 QMGVTCD 328



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 139/323 (43%), Gaps = 1/323 (0%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           +++    +I +   +    K +       LF  M   G++ + +T + LI+        N
Sbjct: 42  RMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQIN 101

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
            A   F ++   G  PD +TY+++I      G V+ +   +DR  ++  ++D  ++ TLI
Sbjct: 102 SAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLI 161

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
                 G     L +  +++    +P+++ YN ++D + + K       +Y EM +  + 
Sbjct: 162 NGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVF 221

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           PN  TY SL+  +      +    +  EM  K +  +V  +NTL+      G   EA  +
Sbjct: 222 PNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSL 281

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
              M   E   PD +T+++++       +  +A+ +FN M + G   ++   + +I    
Sbjct: 282 VAVMM-KEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLS 340

Query: 458 KAQRTDDVVRALNRLPELGITPD 480
           K +  D+ +     +    + PD
Sbjct: 341 KMKMLDEAMDLFEGMRNENVIPD 363



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/349 (19%), Positives = 159/349 (45%), Gaps = 6/349 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V++YN  +    K + +  A  L+ +M ++ V P+ VT+++LI    +    +KA    
Sbjct: 188 DVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLL 247

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M     +P+  T+++++D   + G +  A  L      E    D   ++ L+  Y   
Sbjct: 248 NEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLV 307

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                  NV+  M  +GV  ++ +Y+ ++  + + K   +   +++ M +  + P+   Y
Sbjct: 308 KEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAY 367

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           +SL+    ++      L    EM ++G   +V  Y +L+         D+A  + + +K 
Sbjct: 368 SSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIK- 426

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +  Q + +T++ ++      G++++A+ +F ++L  G   ++   + +I    K    D
Sbjct: 427 DQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFD 486

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNV-----MTQTPKEELGKLVECVE 507
           + +  L+++ + G  PD      ++N      M    ++ L ++++CV+
Sbjct: 487 EALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREMIDCVD 535


>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
 gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
          Length = 698

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 152/317 (47%), Gaps = 1/317 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I Y + +  + +   +D+ E L+ +M D  ++P+   ++ +I+  R      K V+    
Sbjct: 353 ITYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLRE 412

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  PDA  Y+ +I+ +GR   +E A   + + ++     D  ++++LI     AG 
Sbjct: 413 MQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQ 472

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 +Y +M   G  P   T+N ++  +G  KR   V  + +EM   G+ PN  TY +
Sbjct: 473 PLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTT 532

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  Y +AR  +D +   + MKE GM  S T Y+ L    A +G  ++   + + M+  E
Sbjct: 533 LVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSALANAYAQLGMCEQTLHVLQTME-KE 591

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           N + +    + +I   S  G+  EA A+F  + EAG   +    T+L++   +A++ D+V
Sbjct: 592 NIEINLAMLNLLINAFSMAGRSQEAFAVFEYIKEAGLTADKITYTTLMKALIRAEKLDEV 651

Query: 466 VRALNRLPELGITPDDR 482
               + + + G  PD +
Sbjct: 652 SGVFDEMIKAGCRPDGK 668



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 158/317 (49%), Gaps = 17/317 (5%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFER 225
           +Y   + ++R      K  +L  +M   GV PD   ++ +I+   R   L    + +F +
Sbjct: 389 MYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFF-K 447

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G +PD ++++S+IDA  +AG    A  LY +  N+        F+ +I   G    
Sbjct: 448 MQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKR 507

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           ++    + EEM++ G+ PN++TY  L+D   +A+         + M ++G+ P+   Y++
Sbjct: 508 WNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSA 567

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L  AY +    E TL V + M+++ +++++ + N L+   +  G + EAF +FE +K + 
Sbjct: 568 LANAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLLINAFSMAGRSQEAFAVFEYIKEA- 626

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
               D  T+++++       K+ E   +F+EM++AG  P+           GKA+   D+
Sbjct: 627 GLTADKITYTTLMKALIRAEKLDEVSGVFDEMIKAGCRPD-----------GKAK---DM 672

Query: 466 VRALNRLPELGITPDDR 482
           +R+  R  E  ++P D+
Sbjct: 673 LRSAFRFKERELSPKDK 689



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 177/412 (42%), Gaps = 45/412 (10%)

Query: 174 VFRKCR----DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS- 228
           V + CR    D+    RLF +M   GV+ D   ++ LI      + PN+ + + E++ + 
Sbjct: 217 VIQACRHGVVDIYTGFRLFQEMQAEGVQVDGKVYNDLIFACGQAHKPNEGMFFLEKLQAS 276

Query: 229 ----------------------------------FGCDPDALTYSSMIDAYGRAGNVEMA 254
                                             +G  P+   Y++++  Y R G ++  
Sbjct: 277 GLVADRDSYISLMLSLGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQI 336

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             +    R+    I+   +  LI  Y  AG  D    +Y+EM+   ++PN   Y  ++ T
Sbjct: 337 DTVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMI-T 395

Query: 315 MGRAKRPWQVKT-IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
           + R    WQ    + +EM   G++P+ + Y  ++  +GR R  E     + +M++ G++ 
Sbjct: 396 IYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEP 455

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
            V  +N+L+  C   G   EA +++  M  ++ C P + TF+ +I       + ++   M
Sbjct: 456 DVVSWNSLIDACCKAGQPLEARKLYYKM-VNDGCAPTAQTFNIVIHGLGEHKRWNDVNEM 514

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
             EM   G  PN+   T+L+  Y +A+   D V  L  + E G+ P       L N   Q
Sbjct: 515 VEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSALANAYAQ 574

Query: 494 TPK-EELGKLVECVEKSNSKLGY-VVKLLLEEQDIEGDFKKEATELFNSISK 543
               E+   +++ +EK N ++   ++ LL+    + G   +EA  +F  I +
Sbjct: 575 LGMCEQTLHVLQTMEKENIEINLAMLNLLINAFSMAGR-SQEAFAVFEYIKE 625



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 2/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP-NKAVEWFERM 226
           YN  +  + + RD  KA      M   G  PD V+++ +I   R   +        F+ M
Sbjct: 179 YNALVGAYAQNRDYGKALETLSKMKTLGFPPDVVSYTHVIQACRHGVVDIYTGFRLFQEM 238

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            + G   D   Y+ +I A G+A          ++ +      D +++ +L+   G  G  
Sbjct: 239 QAEGVQVDGKVYNDLIFACGQAHKPNEGMFFLEKLQASGLVADRDSYISLMLSLGKHGRT 298

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                + EEMK  G++PN+  YN LL    R  +  Q+ T+   + D G+S N  TY  L
Sbjct: 299 AEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYCLL 358

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + AY RA   +   ++Y+EM++  ++ +  +Y  ++ +  D G   +  ++  +M+ +  
Sbjct: 359 IDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQA-G 417

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             PD+  ++ +I       ++ +A   F +M + G EP++    SLI    KA +  +  
Sbjct: 418 VTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEAR 477

Query: 467 RALNRLPELGITP 479
           +   ++   G  P
Sbjct: 478 KLYYKMVNDGCAP 490


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 165/346 (47%), Gaps = 3/346 (0%)

Query: 133 QDCVIILNNMTNPDTAALALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDD 190
           + C   L+ ++      L+  +F + + A  +  V  YN+ +    K  D+  A  LF+ 
Sbjct: 98  RSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQ 157

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           M   G+ PD VT++TLI       L +++V  FE M   GC+PD +TY+++I+++ +   
Sbjct: 158 MKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKG 217

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
           +  AF  +   +++  + +  ++STLI      G     +  + +M  +G+ PN  TY++
Sbjct: 218 MLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSS 277

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L+D   +A    +   +  EM    +  N  TY +LL          +   ++R M + G
Sbjct: 278 LIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAG 337

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
           +  ++  Y  L+     V   D+A E+F +M+  ++ +PD   + +++       K+ E 
Sbjct: 338 VTPNLQAYTALIHGHIKVRSMDKAMELFNEMR-EKDIKPDILLWGTIVWGLCSESKLEEC 396

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           + +  EM E+G   N  + T+L+  Y KA    + +  L  + +LG
Sbjct: 397 KIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLG 442



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 152/334 (45%), Gaps = 6/334 (1%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K  +L +A  L D+ML   V  + VT++TL+       + N+A E F  M   G  P+  
Sbjct: 284 KAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQ 343

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            Y+++I  + +  +++ A  L++  R +  + D   + T++    +    + C  +  EM
Sbjct: 344 AYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEM 403

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           K  G+  N + Y  L+D   +A    +   + +EM D G      T+ +L+    +    
Sbjct: 404 KESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLV 463

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           ++ +  +  M +  +Q +V +Y  L+          +A ++F++M+  +N  PD   +++
Sbjct: 464 QEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQ-DKNMIPDKIAYTA 522

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           MI      G   EA  M N+M+E G E +L+  TSL+    +  +     + L  +   G
Sbjct: 523 MIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKG 582

Query: 477 ITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 510
           I PD+  C  LL         ELG + E +E  N
Sbjct: 583 IIPDETLCTRLLR-----KHYELGNIDEAIELQN 611



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 154/356 (43%), Gaps = 45/356 (12%)

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           P    F  L S      +   A + F RM  F   P A + ++ +    +AG  +++   
Sbjct: 60  PGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDF 119

Query: 258 YDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
           +         I P  F+   +I      G+     +++E+MK +G+ P+++TYN L+D  
Sbjct: 120 FRDMVGAG--IAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGY 177

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           G+     +   +++EM   G  P+  TY +L+ ++ + +        +REMK+K ++ +V
Sbjct: 178 GKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNV 237

Query: 376 TLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR---------- 424
             Y+TL+ A+C + G    A + F DM +     P+ +T+SS+I   +C+          
Sbjct: 238 ISYSTLIDALCKE-GMMQMAIKFFVDM-TRVGLLPNEFTYSSLID-ANCKAGNLGEAFML 294

Query: 425 --------------------------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
                                     G ++EAE +F  M +AG  PNL   T+LI  + K
Sbjct: 295 ADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIK 354

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG 514
            +  D  +   N + E  I PD    G ++  +    K E  K++   E   S +G
Sbjct: 355 VRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKII-MTEMKESGIG 409



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 96/206 (46%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++Y   M  + K  +  +A  L ++M D G +   VTF  LI       L  +A+ +F R
Sbjct: 413 VIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGR 472

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           MP     P+   Y+++ID   +   +  A  L+D  +++    D  A++ +I      GN
Sbjct: 473 MPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGN 532

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F   LN+  +M  +G++ ++  Y +L+  + +  +  Q +    EM   G+ P+      
Sbjct: 533 FQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTR 592

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGM 371
           LLR +      ++ + +  E+ EKG+
Sbjct: 593 LLRKHYELGNIDEAIELQNELVEKGL 618



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 119/273 (43%), Gaps = 8/273 (2%)

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           FS L++L    G  +     +  M    V P   + N  L  + +A      +  +++M 
Sbjct: 69  FSVLVEL----GMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMV 124

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             G++P   TY  ++    +        S++ +MK+ G+   +  YNTL+     +G  D
Sbjct: 125 GAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLD 184

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           E+  +FE+MK    C+PD  T++++I + C  +G +   E  F EM +   +PN+   ++
Sbjct: 185 ESVCLFEEMKFM-GCEPDVITYNALINSFCKFKGMLRAFE-FFREMKDKDLKPNVISYST 242

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 510
           LI    K       ++    +  +G+ P++     L++   +     E   L + + + +
Sbjct: 243 LIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEH 302

Query: 511 SKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543
             L  V    L +   E     EA ELF ++ K
Sbjct: 303 VDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGK 335



 Score = 40.8 bits (94), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 60/136 (44%), Gaps = 8/136 (5%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
           A++LFD+M D+ + PD + ++ +I     +    +A+    +M   G + D   Y+S++ 
Sbjct: 501 AKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVW 560

Query: 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-- 301
              + G V+ A         +    D    + L++ +   GN D  + +  E+   G+  
Sbjct: 561 GLSQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKHYELGNIDEAIELQNELVEKGLIH 620

Query: 302 ------KPNMITYNNL 311
                  PN+ T ++L
Sbjct: 621 GNSNPAVPNIQTRDDL 636


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 146/320 (45%), Gaps = 4/320 (1%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A  +VI YNV +  + K  +++ A  + D M    V PD VT++T++     +    +A+
Sbjct: 168 AVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAM 224

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E  +RM    C PD +TY+ +I+A  R   V  A  L D  R+     D   ++ L+   
Sbjct: 225 EVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGI 284

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G  D  +    +M + G +PN+IT+N +L +M    R    + +  +M   G SP+ 
Sbjct: 285 CKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSV 344

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            T+  L+    R       + +  +M + G Q +   YN LL         D A E  E 
Sbjct: 345 VTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M  S  C PD  T+++M+T     GKV +A  + N++   G  P L    ++I    KA 
Sbjct: 405 M-VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 463

Query: 461 RTDDVVRALNRLPELGITPD 480
           +T   ++ L+ +    + PD
Sbjct: 464 KTGKAIKLLDEMRAKDLKPD 483



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/388 (22%), Positives = 179/388 (46%), Gaps = 6/388 (1%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
           +++  S +V+ YN  ++       L +A  + D ML R   PD +T++ LI     ++  
Sbjct: 196 DRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGV 255

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
            +A++  + M   GC PD +TY+ +++   + G ++ A    +   +   + +    + +
Sbjct: 256 GQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNII 315

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           ++   + G +     +  +M   G  P+++T+N L++ + R     +   I ++M  +G 
Sbjct: 316 LRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGC 375

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAF 395
            PN  +Y  LL  + + +  +  +     M  +G    +  YNT+L A+C D G  ++A 
Sbjct: 376 QPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKD-GKVEDAV 434

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           EI   + SS+ C P   T++++I   +  GK  +A  + +EM     +P+    +SL+  
Sbjct: 435 EILNQL-SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGG 493

Query: 456 YGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVM-TQTPKEELGKLVECVEKSNSKL 513
             +  + D+ ++  +    +G+ P+   F   +L +  T+     +  LV  + +     
Sbjct: 494 LSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPT 553

Query: 514 GYVVKLLLEEQDIEGDFKKEATELFNSI 541
                +L+E    EG   KEA EL N +
Sbjct: 554 ETSYTILIEGLAYEG-MAKEALELLNEL 580



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 131/278 (47%), Gaps = 1/278 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI +N+ ++          AE+L  DML +G  P  VTF+ LI+      L  +A++  E
Sbjct: 309 VITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILE 368

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +MP  GC P++L+Y+ ++  + +   ++ A    +R  +     D   ++T++      G
Sbjct: 369 KMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDG 428

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +  + +  ++ + G  P +ITYN ++D + +A +  +   +  EM    L P+  TY+
Sbjct: 429 KVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYS 488

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL+    R    ++ +  + E +  G++ +   +N+++        TD A +    M  +
Sbjct: 489 SLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYM-IN 547

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
             C+P   +++ +I   +  G   EA  + NE+   G 
Sbjct: 548 RGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGL 585



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 134/304 (44%), Gaps = 10/304 (3%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           +L++  +  ++M+  G  PD +  +TLI    RM     KA +  E +   G  PD +TY
Sbjct: 117 ELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGK-TRKAAKILEVLEGSGAVPDVITY 175

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEM 296
           + MI  Y +AG +  A  + DR       + P+   ++T+++    +G     + V + M
Sbjct: 176 NVMISGYCKAGEINNALSVLDR-----MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
                 P++ITY  L++   R     Q   +  EM D G +P+  TY  L+    +    
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRL 290

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           ++ +    +M   G Q +V  +N +L      G   +A ++  DM   +   P   TF+ 
Sbjct: 291 DEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADM-LRKGFSPSVVTFNI 349

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I     +G +  A  +  +M + G +PN      L+  + K ++ D  +  L R+   G
Sbjct: 350 LINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG 409

Query: 477 ITPD 480
             PD
Sbjct: 410 CYPD 413



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 14/122 (11%)

Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD 180
           ++L  L  D   +D V ILN +++   + + +T              YN  +    K   
Sbjct: 419 TMLTALCKDGKVEDAVEILNQLSSKGCSPVLIT--------------YNTVIDGLAKAGK 464

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
             KA +L D+M  + +KPD +T+S+L+         ++A+++F      G  P+A+T++S
Sbjct: 465 TGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNS 524

Query: 241 MI 242
           ++
Sbjct: 525 IM 526


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 153/315 (48%), Gaps = 2/315 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRG-VKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           Y   +  + K   +D+A ++FD+ML +G VKP+ V ++ LI         + A+ + +RM
Sbjct: 111 YGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRM 170

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G      TY+ ++ A    G    A+ L +    +    D   ++ LI  +   GN 
Sbjct: 171 VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNV 230

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              L ++E M   GV+  ++TY +L+  + +  +  +   ++ E    G+ P+   Y +L
Sbjct: 231 KKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 290

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + ++  +   +    +  EM++K +      YNTL+     +G  DEA ++ ++M +   
Sbjct: 291 INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM-TKRG 349

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            QPD  T++++I+  S +G V +A  + NEM+  GF P L    +LIQ   K  + DD  
Sbjct: 350 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 409

Query: 467 RALNRLPELGITPDD 481
             +  + E GITPDD
Sbjct: 410 NMVKEMVENGITPDD 424



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 114/236 (48%), Gaps = 1/236 (0%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A  L ++M  +G+ PD  T++ LI+         KA+E FE M   G     +TY+S+I
Sbjct: 197 EAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLI 256

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            A  + G V+    L+D A     R D   ++ LI  + T+GN D    +  EM+   + 
Sbjct: 257 YALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIA 316

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P+ +TYN L+  +    R  + + +  EMT  G+ P+  TY +L+  Y      +D L +
Sbjct: 317 PDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRI 376

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
             EM  KG   ++  YN L+      G  D+A  + ++M  +    PD  T+ S+I
Sbjct: 377 RNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN-GITPDDSTYISLI 431



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 138/299 (46%), Gaps = 11/299 (3%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LF DM    +     TF+ ++        P +A+E   +MP     P+A+TY+++I  + 
Sbjct: 28  LFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFC 83

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIG-VKP 303
             G V+ A  +  R   E+  I PN ++  T+I  +   G  D  + V++EM   G VKP
Sbjct: 84  SRGRVQAALDIM-REMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKP 142

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKE-MTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
             + YN L+       +      +Y++ M + G++    TY  L+ A      G +   +
Sbjct: 143 EAVMYNALIGGYCDQGK-LDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 201

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
             EM  KG+   V  YN L+      G   +A EIFE+M S    +    T++S+I   S
Sbjct: 202 VEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM-SRRGVRATVVTYTSLIYALS 260

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
            +G+V E + +F+E +  G  P+L +  +LI  +  +   D     +  + +  I PDD
Sbjct: 261 KKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 319



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 109/273 (39%), Gaps = 42/273 (15%)

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           AF L+      +  +    F+ +++   +AG     L +  +M     +PN +TYN ++ 
Sbjct: 25  AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIA 80

Query: 314 TMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAY---GRA-----------RYGE- 357
                 R      I +EM +  G++PN  TY +++  +   GR              GE 
Sbjct: 81  GFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEV 140

Query: 358 --------------------DTLSVYRE-MKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
                               DT  +YR+ M E+G+ ++V  YN L+      G   EA+E
Sbjct: 141 KPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYE 200

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           + E+M   +   PD +T++ +I      G V +A  +F  M   G    +   TSLI   
Sbjct: 201 LVEEM-GGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYAL 259

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
            K  +  +  +  +     GI PD      L+N
Sbjct: 260 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALIN 292



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 12/207 (5%)

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+  +LR    A      L + R+M       +   YNT++A     G    A +I  +M
Sbjct: 43  TFNIMLRHLCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMREM 98

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQ 460
           +      P+ +T+ ++I+     G+V EA  +F+EML  G  +P   +  +LI  Y    
Sbjct: 99  RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 158

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG---YV 516
           + D  +   +R+ E G+         L++ +    +  E  +LVE  E     L    + 
Sbjct: 159 KLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVE--EMGGKGLAPDVFT 216

Query: 517 VKLLLEEQDIEGDFKKEATELFNSISK 543
             +L+     EG+ KK A E+F ++S+
Sbjct: 217 YNILINGHCKEGNVKK-ALEIFENMSR 242


>gi|302801820|ref|XP_002982666.1| hypothetical protein SELMODRAFT_421954 [Selaginella moellendorffii]
 gi|300149765|gb|EFJ16419.1| hypothetical protein SELMODRAFT_421954 [Selaginella moellendorffii]
          Length = 796

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 118/569 (20%), Positives = 234/569 (41%), Gaps = 49/569 (8%)

Query: 159 LKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
           LKA K     + YN  +KV+ K   LD+A   + +M D    PD  TF+TL+S       
Sbjct: 161 LKADKCPMTTVAYNTLIKVYGKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQ 220

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
             K +E ++ M   GC  D + Y  ++   G+ G +++A  L++R + E  + +  A+S 
Sbjct: 221 SEKVLEVYDEMQKIGCSLDRVGYEVVVPHAGKVGRLDLACMLFERMKAEGHQPNAVAYSA 280

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LI     +G  +     +EEM+++ ++P + T+ +L++   ++ R       +K+M    
Sbjct: 281 LIAGQLKSGRLEIGTKYFEEMRSLEIRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFN 340

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
             PN   YA+L+ A+ +A   +  L  Y  M+  G+ L   ++  L+   A  G  + A 
Sbjct: 341 YKPNLCIYAALVDAHAKAGMLDAALEFYERMRGVGLWLPPLIFAVLIEQHAQAGKAETAV 400

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            ++ +M+     +P  +T   ++   +  GK  + E +  EM E G      V  S+++ 
Sbjct: 401 RLYREMRGV-GLRPSHFTCRIVVGAVAKGGKYDDVERILFEMQEMGLNVADAVNDSIVKL 459

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN-VMTQTPKEELGKLVECVEKSNSKLG 514
               +R  D      ++   G TP    C  +L+  ++    E   +++  +++  S + 
Sbjct: 460 VDD-KRISDAWELFLKVTGHGFTPHVSLCREILHGFLSCGDMEHARQMLSFMQRPGSAVD 518

Query: 515 ----------YVVKLLLEEQDIEGDFKKEA------------------------------ 534
                     ++    LE +++   F +E                               
Sbjct: 519 LRTYCMLLEFFLRGSRLEHEEVIISFMRETKHPAHSFLCGLMGSSKHRKGQSLADYIKSF 578

Query: 535 -TELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSL 592
            +EL   +    ++   N L++  V +     A    ++   + +Y + I  +    W L
Sbjct: 579 YSELEAEVDFKTRRYLTNVLLNYLVVMGQERKARSFWKVVYQIHMYPNSIVLQGDLTWCL 638

Query: 593 HLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLK 652
            ++S+S+GAAL  +   +    + +      P  + I TG  K       +    E+ +K
Sbjct: 639 KVRSMSIGAALIGVLCTLEKFRERILKRRFVPQRIKILTG-SKADSDAIAVRQAIEAMMK 697

Query: 653 ELNAPFHDSPDKVGWFLTTEAAAKSWLES 681
            L++PF    + +G F    +    W   
Sbjct: 698 PLDSPFIFQDEDLGSFWCRGSFFVKWFRQ 726



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 150/344 (43%), Gaps = 1/344 (0%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
           +L N+  PD A     +   +         +++ +  + + +D    +R+  D+      
Sbjct: 108 VLKNIQEPDVANGFFQWIRRQKWYVPSTYSFSILLNTYGRGKDFQAVQRVLADLKADKCP 167

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
              V ++TLI      +  ++A  +++ M    C PD  T+++++  Y  AG  E    +
Sbjct: 168 MTTVAYNTLIKVYGKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEV 227

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
           YD  +     +D   +  ++   G  G  D    ++E MKA G +PN + Y+ L+    +
Sbjct: 228 YDEMQKIGCSLDRVGYEVVVPHAGKVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQLK 287

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
           + R       ++EM    + P   T+ASL+ AY ++   E  L  +++M+    + ++ +
Sbjct: 288 SGRLEIGTKYFEEMRSLEIRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYKPNLCI 347

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           Y  L+   A  G  D A E +E M+      P    F+ +I   +  GK   A  ++ EM
Sbjct: 348 YAALVDAHAKAGMLDAALEFYERMRGVGLWLP-PLIFAVLIEQHAQAGKAETAVRLYREM 406

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
              G  P+ F    ++    K  + DDV R L  + E+G+   D
Sbjct: 407 RGVGLRPSHFTCRIVVGAVAKGGKYDDVERILFEMQEMGLNVAD 450



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 134/303 (44%), Gaps = 3/303 (0%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           ++P     + ++   +  ++ N   +W  R   +   P   ++S +++ YGR  + +   
Sbjct: 98  IRPSEFHINEVLKNIQEPDVANGFFQWIRRQKWY--VPSTYSFSILLNTYGRGKDFQAVQ 155

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            +    + +K  +   A++TLIK+YG A   D     Y+EM+     P++ T+N L+   
Sbjct: 156 RVLADLKADKCPMTTVAYNTLIKVYGKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLY 215

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
             A +  +V  +Y EM   G S +   Y  ++   G+    +    ++  MK +G Q + 
Sbjct: 216 SYAGQSEKVLEVYDEMQKIGCSLDRVGYEVVVPHAGKVGRLDLACMLFERMKAEGHQPNA 275

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y+ L+A     G  +   + FE+M+S E  +P   TF+S+I      G++      F 
Sbjct: 276 VAYSALIAGQLKSGRLEIGTKYFEEMRSLE-IRPLLGTFASLIEAYCKSGRLETGLKFFK 334

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
           +M    ++PNL +  +L+  + KA   D  +    R+  +G+         L+    Q  
Sbjct: 335 DMEAFNYKPNLCIYAALVDAHAKAGMLDAALEFYERMRGVGLWLPPLIFAVLIEQHAQAG 394

Query: 496 KEE 498
           K E
Sbjct: 395 KAE 397


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 166/364 (45%), Gaps = 23/364 (6%)

Query: 112 CSATE-DDVFSVLR-CLGDDFLEQDCVI--ILNNMTNPDTAALALTYFTNKLKAS--KEV 165
           CSA + +  FSV+R  +G  F+        +LN + N     LA   F    +     +V
Sbjct: 459 CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADV 518

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
             Y + +  F K   +++A + F++M + G  P+ VT++ LI         + A E FE 
Sbjct: 519 YTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 578

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID--------------PN 271
           M S GC P+ +TYS++ID + +AG VE A  +++R    K   D              PN
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPN 638

Query: 272 A--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
              +  L+  +  +   +    + + M   G +PN I Y+ L+D + +  +  + + +  
Sbjct: 639 VVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKT 698

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           EM+++G      TY+SL+  Y + +  +    V  +M E     +V +Y  ++     VG
Sbjct: 699 EMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 758

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
            TDEA+++ + M   + CQP+  T+++MI      GK+     +   M   G  PN    
Sbjct: 759 KTDEAYKLMQ-MMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 817

Query: 450 TSLI 453
             LI
Sbjct: 818 RVLI 821



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 179/414 (43%), Gaps = 21/414 (5%)

Query: 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
           C  LD AE+ + +ML  GV  + +  S+   C        KA      M   G  PD  T
Sbjct: 426 CDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 485

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           YS +++    A  +E+AF L++  +      D   ++ ++  +  AG  +     + EM+
Sbjct: 486 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 545

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
            +G  PN++TY  L+    +AK+      +++ M   G  PN  TY++L+  + +A   E
Sbjct: 546 EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVE 605

Query: 358 DTLSVYREM----------------KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
               ++  M                 +   + +V  Y  LL         +EA ++ + M
Sbjct: 606 KACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAM 665

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
            S E C+P+   + ++I      GK+ EA+ +  EM E GF   L+  +SLI  Y K +R
Sbjct: 666 -SMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKR 724

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV-KL 519
            D   + L+++ E    P+      +++ + +  K +E  KL++ +E+   +   V    
Sbjct: 725 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTA 784

Query: 520 LLEEQDIEGDFKKEATELFNSISKDVKKAYCN--CLIDLCVNLNLLENACKLLE 571
           +++   + G  +     L    SK V   Y     LID C     L+ A  LLE
Sbjct: 785 MIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 838



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 124/290 (42%), Gaps = 3/290 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y+  +    K   LD+A+ +  +M + G      T+S+LI         + A +   +
Sbjct: 675 IVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSK 734

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M    C P+ + Y+ MID   + G  + A+ L      +  + +   ++ +I  +G  G 
Sbjct: 735 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGK 794

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            + CL + E M + GV PN +TY  L+D   +         + +EM       +   Y  
Sbjct: 795 IETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRK 854

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++  + +     ++L +  E+ +      +++Y  L+         + A  + E++ +  
Sbjct: 855 VIEGFNKEFI--ESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFS 912

Query: 406 NCQPD-SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
               D S T++S+I       KV  A  +F+EM + G  P +    SLI+
Sbjct: 913 ATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIK 962



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 39/225 (17%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V++Y   +    K    D+A +L   M ++G +P+ VT++ +I    M       +E  E
Sbjct: 744 VVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLE 803

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           RM S G  P+ +TY  +ID   + G +++A  L +  +   W      +  +I+  G   
Sbjct: 804 RMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIE--GFNK 861

Query: 285 NFDGCLNVYEEMKAIGVKP----------NMI---------------------------T 307
            F   L + +E+      P          N+I                           T
Sbjct: 862 EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSST 921

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           YN+L++++  A +      ++ EMT  G+ P   ++ SL++   R
Sbjct: 922 YNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFR 966



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/446 (19%), Positives = 159/446 (35%), Gaps = 87/446 (19%)

Query: 117 DDVFS-----VLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVT 171
           DDVF       LR   +   E   + +L  +  P        +   ++       +YN  
Sbjct: 112 DDVFGRKSQKFLRQFREKLSESLVIEVLRLIARPSAVISFFVWAGRQIGYKHTAPVYNAL 171

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK----AVEWFERMP 227
           + +  +    D  E++ ++ L +    D   F   ++     +  N     A+E   R+ 
Sbjct: 172 VDLIVR----DDDEKVPEEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLK 227

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMA----------------FGL----YDRARNEKWR 267
            F   P   TY+ +I A+ +A  ++ A                F L    Y   +  KWR
Sbjct: 228 DFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWR 287

Query: 268 ------------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
                        D   ++ LI     A  F+  ++    M+A    PN++TY+ LL   
Sbjct: 288 EALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC 347

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
              K+  + K +   M   G  P+   + SL+ AY  +        + ++M + G     
Sbjct: 348 LNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGY 407

Query: 376 TLYNTLL-AMCAD----------------------------------------VGYTDEA 394
            +YN L+ ++C D                                         G  ++A
Sbjct: 408 VVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKA 467

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           F +  +M   +   PD+ T+S ++       K+  A  +F EM   G   +++  T ++ 
Sbjct: 468 FSVIREM-IGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVD 526

Query: 455 CYGKAQRTDDVVRALNRLPELGITPD 480
            + KA   +   +  N + E+G TP+
Sbjct: 527 SFCKAGLIEQARKWFNEMREVGCTPN 552


>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
 gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
          Length = 467

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 167/363 (46%), Gaps = 2/363 (0%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K  D+ +A R+FD+M   G+ P+ VT++ L+     +    K    FE M   G +P+  
Sbjct: 50  KGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLY 109

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           TY+ +I  + R G  E A  L+D         +  +++TLI      G       + + M
Sbjct: 110 TYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMM 169

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           +  G +P++IT+N L+D  G+A +       + +M   G  P+  TY  L+  + RAR  
Sbjct: 170 RTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDM 229

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
                   +MKE+G++ +   Y  L+   A   +  +AFEI   M+ +   + D+ T+  
Sbjct: 230 TRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKA-GLEVDAHTYGV 288

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           ++      G + +A  +F  M E G EP+  +   +I  YG+   +   ++ +  + + G
Sbjct: 289 LVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKG 348

Query: 477 ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT 535
           + P+    G  + V+ +  K +E   L++ +E   S  G+    +  + D +   + + T
Sbjct: 349 LIPNSASYGLTIRVLCKDDKCQEAEALLDDMETIRSFAGHHQNFIASKSDSQQKDEDKCT 408

Query: 536 ELF 538
           E F
Sbjct: 409 EHF 411



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 127/281 (45%), Gaps = 3/281 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   M  +      +K   LF++M   GV+P+  T++ LI          +A   F+ 
Sbjct: 74  VTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDE 133

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           MP  G   + ++Y+++I    R G +  A  L D  R E  R     F+ L+  YG AG 
Sbjct: 134 MPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGK 193

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               L  + +MKA G +P+ +TYN L+    RA+   +      +M + GL P   TY  
Sbjct: 194 MSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTI 253

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSS 404
           L+ ++ R  +      +   M++ G+++    Y  L+ A+C + G   +A ++F+ M   
Sbjct: 254 LIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCME-GNMKDARKLFQSM-GE 311

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
           +  +P +  +  MI      G   +A  +  EM + G  PN
Sbjct: 312 KGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPN 352



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 135/289 (46%), Gaps = 3/289 (1%)

Query: 151 ALTYFTNKLKASKEVILYNVTMKVFRKCR--DLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
               F    +   E  LY     +   CR  + ++A  LFD+M  RG+  + V+++TLI+
Sbjct: 92  GFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIA 151

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               +     A +  + M + G  P  +T++ ++D YG+AG +  A   +++ +   ++ 
Sbjct: 152 GLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQP 211

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
               ++ LI  +  A +         +MK  G++P  +TY  L+D+  R     +   I 
Sbjct: 212 SAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEIL 271

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             M   GL  + +TY  L+RA       +D   +++ M EKG++ S  +Y+ ++      
Sbjct: 272 AGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGRE 331

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           G + +A ++  +M+  +   P+S ++   I +     K  EAEA+ ++M
Sbjct: 332 GSSYKALKLIMEMR-QKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDM 379


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 171/366 (46%), Gaps = 17/366 (4%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D+++A  +F + +++G K   + ++TL+       L  +A++  + M   GC PD  TY+
Sbjct: 371 DMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYN 430

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +++   + G +  A G+ + A  +    D   F+TLI  Y    N D  + + + M + 
Sbjct: 431 LVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSH 490

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G+ P++ITYN LL+ + +A++   V   +K M + G +PN  TY  L+ ++ + R   + 
Sbjct: 491 GITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEA 550

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           + +++EMK +G+   +    TL+      G  D+A+E+F  ++        +  F+ MI 
Sbjct: 551 MELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMIN 610

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
               +  VS AE +F++M  +   P+ +    +I  Y K    D     L      G+ P
Sbjct: 611 AFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVP 670

Query: 480 DDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 539
               CG +LN +             CV    S+   ++ L+++     G   +E   +F 
Sbjct: 671 SFTTCGKVLNCL-------------CVTHRLSEAVVIINLMVQ----NGIVPEEVNSIFE 713

Query: 540 SISKDV 545
           +  K+V
Sbjct: 714 ADKKEV 719



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 145/333 (43%), Gaps = 36/333 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ +N  + V  K  ++ ++E+LF  ++ RGV P+  TF+  I         ++A    
Sbjct: 215 DILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLL 274

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E + S G  PD ++Y+++I  + +   +  A     +  N                    
Sbjct: 275 ESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNS------------------- 315

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                           GV+PN  TYN +++   +A        I ++    G  P+  TY
Sbjct: 316 ----------------GVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTY 359

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           +SL+            ++V+ E  EKG + S+ LYNTL+   +  G   +A ++ +DM  
Sbjct: 360 SSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDM-M 418

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
              C PD WT++ ++      G +S+A  + N+ +  G  P++F   +LI  Y K +  D
Sbjct: 419 EHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMD 478

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
             +  L+ +   GITPD      LLN + +  K
Sbjct: 479 KAIEILDTMLSHGITPDVITYNTLLNGLCKARK 511



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 179/404 (44%), Gaps = 31/404 (7%)

Query: 92  EKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALA 151
           E +Y+T  N   K     ++     D +F     + D+F       ++N + N      A
Sbjct: 321 EFTYNTIINGFCKAGMMQNADKILRDAMFKGF--IPDEFTYSS---LINGLCNDGDMNRA 375

Query: 152 LTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS- 208
           +  F   ++      +ILYN  +K   K   + +A +L  DM++ G  PD  T++ +++ 
Sbjct: 376 MAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNG 435

Query: 209 ------CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
                  +  N + N A+       + GC PD  T++++ID Y +  N++ A  + D   
Sbjct: 436 LCKMGCLSDANGILNDAI-------AKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTML 488

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
           +     D   ++TL+     A   D  ++ ++ M   G  PN+ITYN L+++  + ++  
Sbjct: 489 SHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVS 548

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE----DTLSVYREMKEKGMQLSVTLY 378
           +   ++KEM   GL+P+  T  +L+   G    GE      L V  E KE     S  ++
Sbjct: 549 EAMELFKEMKTRGLTPDIVTLCTLI--CGLCSNGELDKAYELFVTIE-KEYKFSYSTAIF 605

Query: 379 NTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           N ++ A C  +  +  A ++F  M  S+ C PD++T+  MI      G +  A     E 
Sbjct: 606 NIMINAFCEKLNVS-MAEKLFHKMGGSD-CAPDNYTYRVMIDSYCKTGNIDLAHTFLLEN 663

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +  G  P+      ++ C     R  + V  +N + + GI P++
Sbjct: 664 ISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEE 707



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 147/306 (48%), Gaps = 5/306 (1%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           CR   +D+A RL + ++  G+ PD ++++TLI     ++   +A  +  +M + G +P+ 
Sbjct: 262 CRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNE 321

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
            TY+++I+ + +AG ++ A  +   A  + +  D   +S+LI      G+ +  + V+ E
Sbjct: 322 FTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYE 381

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
               G K ++I YN L+  + +     Q   + K+M ++G SP+  TY  ++    +   
Sbjct: 382 AMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGC 441

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
             D   +  +   KG    +  +NTL+         D+A EI + M  S    PD  T++
Sbjct: 442 LSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTM-LSHGITPDVITYN 500

Query: 416 SMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +++  +C  R K+      F  MLE G  PN+     LI+ + K ++  + +     +  
Sbjct: 501 TLLNGLCKAR-KLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKT 559

Query: 475 LGITPD 480
            G+TPD
Sbjct: 560 RGLTPD 565



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 133/291 (45%), Gaps = 8/291 (2%)

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF-GCDPDALTYSSMIDAYGRAGN 250
           ++R ++P +V      +  R  N P  A++ F ++ +  G      TY  MI+  G  G 
Sbjct: 1   MNRALQPKHVA-----AVIRYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGK 55

Query: 251 VE-MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
            E M   L +  +N   ++    +  +++ YG  G     +NV+E M     +P++ +YN
Sbjct: 56  FEAMEDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYN 115

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            +++ +       Q   +Y  M D G+ P+  T+   ++++         L +   M  +
Sbjct: 116 AIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQ 175

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G + +   Y  +++         EA+ +F++M     C PD  TF+ +I +   +G V E
Sbjct: 176 GCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGIC-PDILTFNKLIHVLCKKGNVQE 234

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +E +F+++++ G  PNLF     IQ   +    D+  R L  +   G+TPD
Sbjct: 235 SEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPD 285



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 125/274 (45%), Gaps = 5/274 (1%)

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +AV  FERM  + C+P   +Y+++++     G    A  +Y R ++    I P+ ++  I
Sbjct: 94  EAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKD--IGIYPDVYTHTI 151

Query: 278 KL--YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           ++  +   G     L +   M   G + N ++Y  ++    +     +   ++ EM   G
Sbjct: 152 RMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQG 211

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           + P+  T+  L+    +    +++  ++ ++ ++G+  ++  +N  +      G  DEA 
Sbjct: 212 ICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAA 271

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            + E +  SE   PD  +++++I       K+ EAE   ++M+ +G EPN F   ++I  
Sbjct: 272 RLLESI-VSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIING 330

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + KA    +  + L      G  PD+     L+N
Sbjct: 331 FCKAGMMQNADKILRDAMFKGFIPDEFTYSSLIN 364


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 167/341 (48%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A  L Y   +   S +V+ YN  +    K +++ K+ER+ + M+D G++P+N T+++LI 
Sbjct: 176 AYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIY 235

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 +  ++V  F+ M S G  P  +  +S I A  R   ++ A  ++D    +  + 
Sbjct: 236 GYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKP 295

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           +  ++STL+  Y   G F    ++   M + G+ PN   +N L++   R     +   I+
Sbjct: 296 NIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIF 355

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           ++M + G+ P+  T+A+++ +  R    +D L  +  M + G+  S  +Y  L+  C + 
Sbjct: 356 EDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNH 415

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G   +A E+  +M + +   P    FSS+I      G+V+E + + + M++ G  PN+  
Sbjct: 416 GELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVT 475

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
             SL++ Y      ++    L+ +  +GI P+    G L++
Sbjct: 476 FNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVD 516



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 151/310 (48%), Gaps = 12/310 (3%)

Query: 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFS 204
           P  AA A T +T           YN+ +  +R+    + A  +F  +L  G+ PD  +++
Sbjct: 113 PHAAADAPTIYT-----------YNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYN 161

Query: 205 TLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
           TLI         +KA E F +M      PD +TY+S+ID   +   +  +  + ++  + 
Sbjct: 162 TLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDA 221

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
             R +   +++LI  Y TAG +   + V++EM + G+ P ++  N+ +  + R  R  + 
Sbjct: 222 GIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEA 281

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
           K I+  M   G  PN  +Y++LL  Y       +  S+   M  KG+  +   +N L+  
Sbjct: 282 KDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINA 341

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
            A  G  D+A  IFEDM+ ++   PD+ TF+++I+     G++ +A   FN M++ G  P
Sbjct: 342 YARCGMMDKAMLIFEDMQ-NKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPP 400

Query: 445 NLFVLTSLIQ 454
           +  V   LIQ
Sbjct: 401 SEAVYRCLIQ 410



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 126/271 (46%), Gaps = 7/271 (2%)

Query: 216 PNKAVEWFERMPSFGCD------PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
           P  AVE F+RM  + C       P   TY+ +ID Y R    E+A  ++ R        D
Sbjct: 97  PALAVELFKRMDRWACPHAAADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPD 156

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
             +++TLI  +   G  D    ++ +M    V P+++TYN+L+D + + K   + + + +
Sbjct: 157 VCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLE 216

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           +M D G+ PN  TY SL+  Y  A   ++++ V++EM   G+   V   N+ +       
Sbjct: 217 QMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHN 276

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
              EA +IF+ M   +  +P+  ++S+++   +  G  +   ++ N M+  G  PN    
Sbjct: 277 RIKEAKDIFDSM-VLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFF 335

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             LI  Y +    D  +     +   G+ PD
Sbjct: 336 NILINAYARCGMMDKAMLIFEDMQNKGMIPD 366



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 160/384 (41%), Gaps = 45/384 (11%)

Query: 159 LKASKEVI----LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMN 213
           L  SK ++     +N+ +  + +C  +DKA  +F+DM ++G+ PD VTF+T+IS   R+ 
Sbjct: 322 LMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIG 381

Query: 214 NLPNKAVEWFERMPSFGCDPDALTY----------------------------------- 238
            L + A+  F  M   G  P    Y                                   
Sbjct: 382 RL-DDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKY 440

Query: 239 -SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
            SS+I+   + G V     + D       R +   F++L++ Y   GN +    + + M 
Sbjct: 441 FSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMA 500

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
           +IG++PN   Y  L+D   +  R     T++++M   G+ P    Y  +L    +AR   
Sbjct: 501 SIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTT 560

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
               ++ EM E G  +S+  Y  +L        TDEA  + E +  + N + D  TF+ +
Sbjct: 561 AAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKL-FAMNVKFDIITFNIV 619

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I+     G+  EA+ +F  +   G  P +     +I    K +  ++       + + G 
Sbjct: 620 ISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGR 679

Query: 478 TPDDRFCGCLLNVMTQTPKEELGK 501
            PD R    ++ ++ +  K E+ K
Sbjct: 680 APDSRLLNHIVRMLLK--KAEVAK 701


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 146/320 (45%), Gaps = 4/320 (1%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A  +VI YNV +  + K  +++ A  + D M    V PD VT++T++     +    +A+
Sbjct: 168 AVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAM 224

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E  +RM    C PD +TY+ +I+A  R   V  A  L D  R+     D   ++ L+   
Sbjct: 225 EVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGI 284

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G  D  +    +M + G +PN+IT+N +L +M    R    + +  +M   G SP+ 
Sbjct: 285 CKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSV 344

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            T+  L+    R       + +  +M + G Q +   YN LL         D A E  E 
Sbjct: 345 VTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M  S  C PD  T+++M+T     GKV +A  + N++   G  P L    ++I    KA 
Sbjct: 405 M-VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 463

Query: 461 RTDDVVRALNRLPELGITPD 480
           +T   ++ L+ +    + PD
Sbjct: 464 KTGKAIKLLDEMRAKDLKPD 483



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 158/360 (43%), Gaps = 36/360 (10%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
           +++  S +V+ YN  ++       L +A  + D ML R   PD +T++ LI     ++  
Sbjct: 196 DRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGV 255

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG-------------------- 256
             A++  + M   GC PD +TY+ +++   + G ++ A                      
Sbjct: 256 GHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNII 315

Query: 257 LYDRARNEKWR-------------IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           L       +W                P+   F+ LI      G     +++ E+M   G 
Sbjct: 316 LRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGC 375

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           +PN ++YN LL    + K+  +     + M   G  P+  TY ++L A  +    ED + 
Sbjct: 376 QPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVE 435

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           +  ++  KG    +  YNT++   A  G T +A ++ ++M+ +++ +PD+ T+SS++   
Sbjct: 436 ILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMR-AKDLKPDTITYSSLVGGL 494

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           S  GKV EA   F+E    G  PN     S++    K+++TD  +  L  +   G  P++
Sbjct: 495 SREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNE 554



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 132/278 (47%), Gaps = 1/278 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI +N+ ++          AE+L  DML +G  P  VTF+ LI+      L  +A++  E
Sbjct: 309 VITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILE 368

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +MP  GC P++L+Y+ ++  + +   ++ A    +R  +     D   ++T++      G
Sbjct: 369 KMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDG 428

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +  + +  ++ + G  P +ITYN ++D + +A +  +   +  EM    L P+  TY+
Sbjct: 429 KVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYS 488

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL+    R    ++ +  + E +  G++ +   +N+++        TD A +    M  +
Sbjct: 489 SLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFM-IN 547

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
             C+P+  +++ +I   +  G   EA  + NE+   G 
Sbjct: 548 RGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGL 585



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 131/303 (43%), Gaps = 8/303 (2%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           +L++  +  ++M+  G  PD +  +TLI          KA +  E +   G  PD +TY+
Sbjct: 117 ELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYN 176

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMK 297
            MI  Y +AG +  A  + DR       + P+   ++T+++    +G     + V + M 
Sbjct: 177 VMISGYCKAGEINNALSVLDR-----MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRML 231

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
                P++ITY  L++   R         +  EM D G +P+  TY  L+    +    +
Sbjct: 232 QRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLD 291

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           + +    +M   G Q +V  +N +L      G   +A ++  DM   +   P   TF+ +
Sbjct: 292 EAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADML-RKGFSPSVVTFNIL 350

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I     +G +  A  +  +M + G +PN      L+  + K ++ D  +  L R+   G 
Sbjct: 351 INFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGC 410

Query: 478 TPD 480
            PD
Sbjct: 411 YPD 413



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 72/158 (45%), Gaps = 14/158 (8%)

Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD 180
           ++L  L  D   +D V ILN +++   + + +T              YN  +    K   
Sbjct: 419 TMLTALCKDGKVEDAVEILNQLSSKGCSPVLIT--------------YNTVIDGLAKAGK 464

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
             KA +L D+M  + +KPD +T+S+L+         ++A+++F      G  P+A+T++S
Sbjct: 465 TGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNS 524

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           ++    ++   + A        N   + +  +++ LI+
Sbjct: 525 IMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIE 562



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 4/175 (2%)

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           +  NN L  M R     +     + M  +G  P+     +L+R + R         +   
Sbjct: 103 VESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEI 162

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           ++  G    V  YN +++     G  + A  + + M  S    PD  T+++++      G
Sbjct: 163 LEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS----PDVVTYNTILRSLCDSG 218

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           K+ +A  + + ML+    P++   T LI+   +       ++ L+ + + G TPD
Sbjct: 219 KLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPD 273


>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
 gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
 gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 145/313 (46%), Gaps = 2/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  M        +D AER+F+ M    +KPD VT++T+I          KA+E    M 
Sbjct: 225 YNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDME 284

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G + D +TY +MI A     +      LY     +  ++ P+AFS +I      G  +
Sbjct: 285 TRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLN 344

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V+E M   G KPN+  Y  L+D   ++        +   M D G  P+  TY+ ++
Sbjct: 345 EGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 404

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +    E+ L  +   +  G+ ++   Y++L+      G  DEA  +FE+M S + C
Sbjct: 405 NGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEM-SEKGC 463

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEM-LEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             DS+ ++++I   +   KV EA A+F  M  E G +  ++  T L+    K  R ++ +
Sbjct: 464 TRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEAL 523

Query: 467 RALNRLPELGITP 479
           +  + + + GITP
Sbjct: 524 KLWDMMIDKGITP 536



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 165/361 (45%), Gaps = 28/361 (7%)

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           Y S++D    A +V+    +    +  ++ +  +A + LIK +G  G  +  L V+ +MK
Sbjct: 155 YVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMK 214

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
             G++P + TYN L++ +  A      + +++ M    + P+  TY ++++ Y +A   +
Sbjct: 215 ENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQ 274

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF----EIFEDMKSSENCQPDSWT 413
             +   R+M+ +G +     Y T++  C    Y D  F     ++++M   +  Q     
Sbjct: 275 KAMEKLRDMETRGHEADKITYMTMIQAC----YADSDFGSCVALYQEM-DEKGIQVPPHA 329

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           FS +I      GK++E   +F  M+  G +PN+ + T LI  Y K+   +D +R L+R+ 
Sbjct: 330 FSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 389

Query: 474 ELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL--GYVVKLLLEEQDIEGDFK 531
           + G  PD      ++N + +      G++ E ++  ++    G  +  +     I+G  K
Sbjct: 390 DEGFKPDVVTYSVVVNGLCKN-----GRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGK 444

Query: 532 K----EATELFNSISKD--VKKAYC-NCLIDLCVNLNLLENACKLL-----ELGLTLEVY 579
                EA  LF  +S+    + +YC N LID       ++ A  L      E G    VY
Sbjct: 445 AGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVY 504

Query: 580 T 580
           T
Sbjct: 505 T 505


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 184/400 (46%), Gaps = 41/400 (10%)

Query: 119 VFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVF 175
           +F  L  LG     Q C   ++ +        AL  F+ +LK      +V  Y+  +  F
Sbjct: 511 IFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFS-ELKEKGLVPDVFTYSSLISGF 569

Query: 176 RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
            K  +++KA  L D+M  +G+ P+   ++ L+     +    +A + F+ MP  G +PD+
Sbjct: 570 CKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS 629

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           +TYS+MID Y ++ NV  AF L+    ++  +     ++ L+      G+ +  +N++ E
Sbjct: 630 VTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFRE 689

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M   G    + ++N L+D   ++ +  +   +++EM    + P+  TY +++  + +A  
Sbjct: 690 MLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGK 748

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            E+   +++EM+E+ + +    Y +L+     +G + E F +FE M  ++  +PD  T+ 
Sbjct: 749 MEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKM-VAKGVKPDEVTYG 807

Query: 416 -----------------------------------SMITICSCRGKVSEAEAMFNEMLEA 440
                                               +IT    R  ++EA  + +EM E 
Sbjct: 808 LVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGEL 867

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           G +P+L   ++L++ + +A + D+  R    +  LG+ PD
Sbjct: 868 GLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPD 907



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 152/311 (48%), Gaps = 4/311 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V++Y+  +  +     +++A RL D M   GV PD   ++ +ISC        +A  +  
Sbjct: 384 VVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLL 443

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G  PDA+T+ + I  Y + G +  A   +D   +     +   ++ LI  +  AG
Sbjct: 444 EIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAG 503

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N    L+++  + A+GV P++ T +  +  + +  R  +   ++ E+ + GL P+  TY+
Sbjct: 504 NLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYS 563

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL+  + +    E    ++ EM  KG+  ++ +YN L+      G    A ++F+ M   
Sbjct: 564 SLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGM-PE 622

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +  +PDS T+S+MI        V+EA ++F+EM   G +P+ FV  +L+       +  D
Sbjct: 623 KGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVH---GCCKEGD 679

Query: 465 VVRALNRLPEL 475
           + +A+N   E+
Sbjct: 680 MEKAMNLFREM 690



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 108/457 (23%), Positives = 188/457 (41%), Gaps = 73/457 (15%)

Query: 68  GKTGSSPKSYIW--VNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSAT------EDDV 119
           G+ G  P +Y +  +     RA ++ E            L  D ++CSA       E D+
Sbjct: 201 GEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDI 260

Query: 120 FSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR 179
             VLR + D  +   C I +N                        +I YNV +    K  
Sbjct: 261 DEVLR-IKDVMV--SCGIPIN------------------------LITYNVLIHGLCKFG 293

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTY 238
            ++KA  +   M+  G KP++ TF  LI    R +N+  +A+E  + M      P A++Y
Sbjct: 294 KMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNM-GRALELLDEMEKRNLVPSAVSY 352

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
            +MI+      ++ +A  L ++      + +   +STLI  Y + G  +    + + M  
Sbjct: 353 GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSC 412

Query: 299 IGVKPNMITYNN-----------------LLDTMGRAKRPWQV----------------- 324
            GV P++  YN                  LL+  GR  +P  V                 
Sbjct: 413 SGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTE 472

Query: 325 -KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
               + EM D+GL PN   Y  L+  + +A    + LS++R +   G+   V   +  + 
Sbjct: 473 AAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIH 532

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
                G   EA ++F ++K  +   PD +T+SS+I+    +G+V +A  + +EM   G  
Sbjct: 533 GLLKNGRVQEALKVFSELK-EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIA 591

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           PN+F+  +L+    K+       +  + +PE G+ PD
Sbjct: 592 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPD 628



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 141/312 (45%), Gaps = 1/312 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +     C+DL  A +L + M   G+KP+ V +STLI          +A    + M 
Sbjct: 352 YGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMS 411

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD   Y+++I    +AG +E A       +    + D   F   I  Y   G   
Sbjct: 412 CSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMT 471

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
                ++EM   G+ PN   Y  L++   +A    +  +I++ +   G+ P+  T ++ +
Sbjct: 472 EAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFI 531

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +    ++ L V+ E+KEKG+   V  Y++L++     G  ++AFE+ ++M   +  
Sbjct: 532 HGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEM-CLKGI 590

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+ + +++++      G +  A  +F+ M E G EP+    +++I  Y K++   +   
Sbjct: 591 APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFS 650

Query: 468 ALNRLPELGITP 479
             + +P  G+ P
Sbjct: 651 LFHEMPSKGVQP 662



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 147/334 (44%), Gaps = 24/334 (7%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           +++++ +  +++   LD+A  +F       V  ++    +LI C  + ++  K       
Sbjct: 157 VVFDILIDSYKRMGMLDEAANVF------FVAKNDSILISLIRCNSLRSMGEK------- 203

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
               G  P+  TY+ +     RA  +  A   ++  +    + D NA S LI  +   G+
Sbjct: 204 ----GLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 259

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D  L + + M + G+  N+ITYN L+  + +  +  +   I K M   G  PN  T+  
Sbjct: 260 IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 319

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL---LAMCADVGYTDEAFEIFEDMK 402
           L+  Y R       L +  EM+++ +  S   Y  +   L  C D+   +   ++ E M 
Sbjct: 320 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN---KLLEKMT 376

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            S   +P+   +S++I   +  G++ EA  + + M  +G  P++F   ++I C  KA + 
Sbjct: 377 FS-GLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKM 435

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           ++    L  +   G+ PD    G  +   ++T K
Sbjct: 436 EEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGK 469



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 108/269 (40%), Gaps = 57/269 (21%)

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVY------------------EEMKAIGVKPNMITYNNL 311
           P  F  LI  Y   G  D   NV+                    M   G+ PN  TY  +
Sbjct: 156 PVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTII 215

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
              + RAKR  + K  ++EM   GL P++N  ++L+  + R    ++ L +   M   G+
Sbjct: 216 TAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGI 275

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT------------ 419
            +++  YN L+      G  ++A EI + M +   C+P+S TF  +I             
Sbjct: 276 PINLITYNVLIHGLCKFGKMEKAAEILKGMITL-GCKPNSRTFCLLIEGYCREHNMGRAL 334

Query: 420 ------------------------ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
                                   +C C+  +S A  +  +M  +G +PN+ V ++LI  
Sbjct: 335 ELLDEMEKRNLVPSAVSYGAMINGLCHCK-DLSLANKLLEKMTFSGLKPNVVVYSTLIMG 393

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDRFC 484
           Y    R ++  R L+ +   G+ P D FC
Sbjct: 394 YASEGRIEEARRLLDGMSCSGVAP-DIFC 421



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 84/190 (44%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K   +++A  LF +M +R +  D VT+++L+         ++    FE+M + G  PD +
Sbjct: 745 KAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEV 804

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           TY  +I A+ +  N+  AF L D    +           LI       +      + +EM
Sbjct: 805 TYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEM 864

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
             +G+KP++   + L+ +   A +  +   +++ +   GL P+  T   L+         
Sbjct: 865 GELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDS 924

Query: 357 EDTLSVYREM 366
           ED  ++ +++
Sbjct: 925 EDARNLIKQL 934


>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
          Length = 950

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 164/356 (46%), Gaps = 5/356 (1%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           C+I L       + AL ++    +      +  Y++ +  F K +D   A  +F+DM+  
Sbjct: 487 CLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKE 546

Query: 195 GVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           G+KPD + ++ +IS  C  M N+ ++A++  + M      P   T+  +I  Y ++G++ 
Sbjct: 547 GMKPDVILYNNIISAFCG-MGNM-DRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMR 604

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            +  ++D  R        + F+ LI         +  + + +EM   GV  N  TY  ++
Sbjct: 605 RSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIM 664

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                     +    +  + + GL  +  TY +LL+A  ++   +  L+V +EM  + + 
Sbjct: 665 QGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIP 724

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +  +YN L+   A  G   EA ++ + MK  E  +PD  T++S I+ CS  G ++ A  
Sbjct: 725 RNSFVYNILIDGWARRGDVWEAADLIQQMKK-EGVKPDIHTYTSFISACSKAGDMNRATQ 783

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
              EM   G +PN+   T+LI+ + +A   +  +     +  +GI PD     CLL
Sbjct: 784 TIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLL 839



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 157/374 (41%), Gaps = 10/374 (2%)

Query: 93  KSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALAL 152
           K+Y    N  VKL    ++ +  ED V   ++   D  L  + +     M N D A   +
Sbjct: 518 KTYSMMINGFVKLKDWANAFAVFEDMVKEGMK--PDVILYNNIISAFCGMGNMDRAIQTV 575

Query: 153 TYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARM 212
                KL+       +   +  + K  D+ ++  +FD M   G  P   TF+ LI+    
Sbjct: 576 KEM-QKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVE 634

Query: 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
                KAVE  + M   G   +  TY+ ++  Y   G+   AF  + R +NE   +D   
Sbjct: 635 KRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFT 694

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           +  L+K    +G     L V +EM A  +  N   YN L+D   R    W+   + ++M 
Sbjct: 695 YEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK 754

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             G+ P+ +TY S + A  +A           EM+  G++ ++  Y TL+   A     +
Sbjct: 755 KEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPE 814

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA------EAMFNEMLEAGFEPNL 446
           +A   +E+MK+    +PD   +  ++T    R  ++EA        +  EM+EAG   ++
Sbjct: 815 KALSCYEEMKAM-GIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDM 873

Query: 447 FVLTSLIQCYGKAQ 460
                  +C  K +
Sbjct: 874 GTAVHWSKCLCKIE 887



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 153/350 (43%), Gaps = 12/350 (3%)

Query: 143 TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVT 202
           TN D     ++ F    K S+    + + +K + +  D+ +A   F+ M  RG+ P +  
Sbjct: 287 TNGDNWQAVISAFEKISKPSR--TEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRI 344

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           +++LI    +    ++A+    +M   G +   +TYS ++  + +AG+ E A   +D A+
Sbjct: 345 YTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAK 404

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
                ++ + +  +I  +    N +    +  EM+  G+   +  Y+ ++D         
Sbjct: 405 RIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEK 464

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +   ++K + + G +P   TY  L+  Y +       L V R MKE+G++ ++  Y+ ++
Sbjct: 465 KGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMI 524

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
                +     AF +FEDM   E  +PD   ++++I+     G +  A     EM +   
Sbjct: 525 NGFVKLKDWANAFAVFEDM-VKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRH 583

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            P       +I  Y K   + D+ R+L     +      R CGC+  V T
Sbjct: 584 RPTTRTFMPIIHGYAK---SGDMRRSLEVFDMM------RRCGCVPTVHT 624



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/404 (20%), Positives = 164/404 (40%), Gaps = 41/404 (10%)

Query: 117 DDVFSVLRCLGDDFLEQDCV---IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMK 173
           D+  S +R + ++ +E   V   +I+   +    A  A  +F    +  K +        
Sbjct: 359 DEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKI 418

Query: 174 VFRKCR--DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
           ++  C+  ++++AE L  +M + G+      + T++    M     K +  F+R+   G 
Sbjct: 419 IYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGF 478

Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
            P  +TY  +I+ Y + G +  A  +    + E  + +   +S +I  +    ++     
Sbjct: 479 TPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFA 538

Query: 292 VYEEMKAIGVKPNMITYNNLLDT---MGRAKRPWQ-VKT--------------------- 326
           V+E+M   G+KP++I YNN++     MG   R  Q VK                      
Sbjct: 539 VFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYA 598

Query: 327 ----------IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
                     ++  M   G  P  +T+  L+      R  E  + +  EM   G+  +  
Sbjct: 599 KSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEH 658

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            Y  ++   A VG T +AFE F  ++ +E    D +T+ +++  C   G++  A A+  E
Sbjct: 659 TYTKIMQGYASVGDTGKAFEYFTRLQ-NEGLDVDIFTYEALLKACCKSGRMQSALAVTKE 717

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           M       N FV   LI  + +     +    + ++ + G+ PD
Sbjct: 718 MSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPD 761


>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 727

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 149/321 (46%), Gaps = 1/321 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +  + +  D   A  +F+DM + G++PD VT++ L+     +    +A++   RM 
Sbjct: 339 YSMLVDGYVQLGDFANAFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMK 398

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + GC P   TY ++ID + + G+V MA+      +    R +   ++ ++      G  D
Sbjct: 399 TRGCSPTIQTYITIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQID 458

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              +V +EM+  GV+PN  +Y  L+                K + +    P   +YASLL
Sbjct: 459 RAASVIDEMELAGVQPNFRSYTTLMQGFASIGEIGLAFKCLKRVNEITQKPPIISYASLL 518

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           +A  +A   ++ ++V  EM   G+ ++  ++NTLL   A  G   EA+ I + M+  E  
Sbjct: 519 KACCKAGRMQNAIAVTEEMAFAGVPMNNYIFNTLLDGWAQRGDMWEAYGIMQKMRQ-EGF 577

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD  +++S +  C   G + +A     EM +   +PNL   T LI  +      +  + 
Sbjct: 578 TPDIHSYTSFVNACCKAGDMQKATETIEEMKQQDLQPNLQTYTILIHGWTSVSHPEKALI 637

Query: 468 ALNRLPELGITPDDRFCGCLL 488
             + +   G+ PD     C++
Sbjct: 638 CYDEMKAAGLIPDKPLYYCIV 658



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 146/329 (44%), Gaps = 15/329 (4%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +  + K  D   A   F+ M   G+      ++ LI    M      AV   E M 
Sbjct: 126 YALLIHYYGKRGDKRGARVTFEKMRAAGIDSSVHAYNNLIRAYIMAQNLQGAVSCVEEME 185

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P+A T+S++I  YG +GNVE A   + R+ +E W  +   +S++I  Y  AGN +
Sbjct: 186 IEGIFPNAATFSAIISGYGSSGNVEAAEKWFQRSVSENWNHNVAIYSSIIHAYCKAGNME 245

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM---TDNGLSPNWNTYA 344
               +  +M+  G++  +  YN L+D   R     Q   ++ ++    D GLSP   TY 
Sbjct: 246 RAEALVADMEEQGLEATLGLYNILMDGYARCHIEAQCLNVFHKLKARIDTGLSPTAVTYG 305

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L+  Y +       L   +EMK +G+ L+   Y+ L+     +G    AF +FEDM S 
Sbjct: 306 CLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFANAFSVFEDM-SE 364

Query: 405 ENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
              +PD  T++ ++   C  R +++ A  +   M   G  P +    ++I  + K   T 
Sbjct: 365 AGIEPDWVTYNILLKAFCKSR-QMTRAIQLLGRMKTRGCSPTIQTYITIIDGFMK---TG 420

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMT 492
           DV  A   + E+      +  GC  N  T
Sbjct: 421 DVRMAYKTVSEM------KLAGCRPNATT 443



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 156/335 (46%), Gaps = 10/335 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V +Y+  +  + K  ++++AE L  DM ++G++     ++ L+      ++  + +  F 
Sbjct: 228 VAIYSSIIHAYCKAGNMERAEALVADMEEQGLEATLGLYNILMDGYARCHIEAQCLNVFH 287

Query: 225 RMPS---FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
           ++ +    G  P A+TY  +I+ Y + G +  A       + +   ++ N +S L+  Y 
Sbjct: 288 KLKARIDTGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYV 347

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G+F    +V+E+M   G++P+ +TYN LL    ++++  +   +   M   G SP   
Sbjct: 348 QLGDFANAFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQ 407

Query: 342 TYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           TY +++  +   G  R    T+S   EMK  G + + T YN ++     +G  D A  + 
Sbjct: 408 TYITIIDGFMKTGDVRMAYKTVS---EMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVI 464

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           ++M+ +   QP+  ++++++   +  G++  A      + E   +P +    SL++   K
Sbjct: 465 DEMELA-GVQPNFRSYTTLMQGFASIGEIGLAFKCLKRVNEITQKPPIISYASLLKACCK 523

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           A R  + +     +   G+  ++     LL+   Q
Sbjct: 524 AGRMQNAIAVTEEMAFAGVPMNNYIFNTLLDGWAQ 558



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 103/247 (41%), Gaps = 47/247 (19%)

Query: 267 RIDPNA---FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
           RID      ++ LI  YG  G+  G    +E+M+A G+  ++  YNNL+     A+    
Sbjct: 117 RIDKAVERDYALLIHYYGKRGDKRGARVTFEKMRAAGIDSSVHAYNNLIRAYIMAQNLQG 176

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
             +  +EM   G+ PN  T+++++  YG         S   E  EK  Q SV        
Sbjct: 177 AVSCVEEMEIEGIFPNAATFSAIISGYGS--------SGNVEAAEKWFQRSV-------- 220

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
                               SEN   +   +SS+I      G +  AEA+  +M E G E
Sbjct: 221 --------------------SENWNHNVAIYSSIIHAYCKAGNMERAEALVADMEEQGLE 260

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLP---ELGITPDDRFCGCLLNVMTQTPKEELG 500
             L +   L+  Y +       +   ++L    + G++P     GCL+N+ T+     LG
Sbjct: 261 ATLGLYNILMDGYARCHIEAQCLNVFHKLKARIDTGLSPTAVTYGCLINLYTK-----LG 315

Query: 501 KLVECVE 507
           K+++ +E
Sbjct: 316 KMMKALE 322


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 155/345 (44%), Gaps = 9/345 (2%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +   S +++ YN  +    K + L +A  L  +M   G  P++VT +TL+ 
Sbjct: 163 AMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMD 222

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               +   ++A+E  E M   G D D + Y ++I  +   GN++    L+D    +    
Sbjct: 223 GLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISA 282

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           +   +S L+      G +     V   M   G+ P+++TY  L+D + +  R      + 
Sbjct: 283 NVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLL 342

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             M + G  P+  TY  LL    +     D   + R M EKG +  V  YNTL+    D 
Sbjct: 343 NLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDK 402

Query: 389 GYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           G  DEA ++F  M  +ENC +P+ +TF+ +I      G++++A  +  +M++ G   NL 
Sbjct: 403 GKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLV 462

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 484
               L+    KA +  + +    ++ +LG  P+        D FC
Sbjct: 463 TYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFC 507



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 162/359 (45%), Gaps = 40/359 (11%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           C+D     A  L + M+++G +P NVT++ L+S      L   A +    M   G   D 
Sbjct: 330 CKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADV 389

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVY 293
           +TY++++      G V+ A  L++   + +  ++PN F+   LI      G     + ++
Sbjct: 390 VTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIH 449

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
            +M   G   N++TYN LL    +A +  +   ++K++ D G  PN  TY+ L+  + + 
Sbjct: 450 RKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKM 509

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD--- 410
           R       ++ EM+  G+  ++  YNTL+A     G  ++A  +F++M ++ NC+PD   
Sbjct: 510 RMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNA-NCEPDIIS 568

Query: 411 --------------------------------SWTFSSMITICSCRGKVSEAEAMFNEML 438
                                           + TFS++I   S  G++ EA++    M+
Sbjct: 569 FNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMV 628

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 497
            +GF P+  V  SL++       T +++  L+++   G   D +    +L  +  + +E
Sbjct: 629 ASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQE 687



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 131/300 (43%), Gaps = 3/300 (1%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           +A  LF   LD  + P   T + L+ + AR  N    A   + RM      P   + S++
Sbjct: 57  EAVSLFHSALDFNLLPSWATCNFLVDALARSRNY-GLAFSVYRRMTHVDVLPSFGSLSAL 115

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I+ +  A   ++ FG+        + ++    + ++K     G     + +  EM    V
Sbjct: 116 IECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSV 175

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            P++++YN L++ + +AK+  +   +  EM   G  PN  T  +L+    +    ++ + 
Sbjct: 176 SPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAME 235

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           +   MK+KG    V LY TL++   + G  D   E+F++M   +    +  T+S ++   
Sbjct: 236 LLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEM-LGKGISANVVTYSCLVHGL 294

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
              G+  EA  + N M E G  P++   T LI    K  R    +  LN + E G  P +
Sbjct: 295 CRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSN 354



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 110/229 (48%), Gaps = 1/229 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ YN+ +    K   + +A  L+  +LD G  P++ T+S LI       + N A   F 
Sbjct: 461 LVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFC 520

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M + G +P    Y++++ +  + G++E A  L+    N     D  +F+T+I     AG
Sbjct: 521 EMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAG 580

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           +F     +  +M  +G++P+ +T++ L++ + +     + K+  + M  +G +P+   Y 
Sbjct: 581 DFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYD 640

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA-MCADVGYTD 392
           SLL+         + +++  +M  KG  L   + +T+L  +C  +   D
Sbjct: 641 SLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVD 689



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 107/234 (45%), Gaps = 17/234 (7%)

Query: 270 PNA-FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           PN+ F+  + L+ +A +F+             + P+  T N L+D + R++      ++Y
Sbjct: 51  PNSQFTEAVSLFHSALDFN-------------LLPSWATCNFLVDALARSRNYGLAFSVY 97

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           + MT   + P++ + ++L+  +  A+  +    V   + ++G  ++V + N +L      
Sbjct: 98  RRMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRN 157

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           G   EA  +  +M   ++  PD  +++++I  +C  + K+ EA  +  EM  AG  PN  
Sbjct: 158 GGVFEAMGLIREM-GRKSVSPDIVSYNTLINGLCKAK-KLKEAVGLLLEMEAAGCFPNSV 215

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
             T+L+    K  R D+ +  L  + + G   D    G L++        + GK
Sbjct: 216 TCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGK 269



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 4/116 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP--NKAVE 221
           ++I +N  +    K  D    + L   M++ G++PD +TFSTLI+  R++ L   ++A  
Sbjct: 565 DIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLIN--RLSKLGELDEAKS 622

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
             ERM + G  PDAL Y S++      G+      L  +   +   +D    ST++
Sbjct: 623 ALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTIL 678


>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 658

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 164/340 (48%), Gaps = 12/340 (3%)

Query: 142 MTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNV 201
           M + + A L L+ F+           Y + +  + +   LD+A+  F +M    V  +  
Sbjct: 277 MQDAEDAGLKLSTFS-----------YGLLIDAYSRAGRLDQAKAAFHNMKVENVPANAF 325

Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
            +S L+   R     +  +   + M +    P+   ++ +ID YG+ G +  A   + + 
Sbjct: 326 IYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQM 385

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
             E ++ D   +++LI+ +  AG     L++ ++M+     P++ TYN +L+ +G   R 
Sbjct: 386 DKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPSLHTYNIILNALGWHNRW 445

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
            ++  +  EM   GL PN  TY +L+ +YG ++   +     ++MK +G+Q S ++Y  L
Sbjct: 446 KEMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCAL 505

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
               A  G  ++A E+F+ M+  +  + +    + +I      GK  EA ++F+ +LE G
Sbjct: 506 ANSYAKRGLCEQAMEVFKSME-KDGVELNLSMLNLLINAFGVAGKYVEAFSVFDYILEVG 564

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
             P++   T+L++   KA++ D V     ++   G TPDD
Sbjct: 565 MSPDVVTYTTLMKALIKAEQLDQVPDVYEQMVRAGCTPDD 604



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 153/348 (43%), Gaps = 36/348 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  ++     R LD AE  + +M  +  K +  T + L+S     +L  +  +  +   
Sbjct: 222 YSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQDAE 281

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G      +Y  +IDAY RAG ++ A   +   + E    +   +S L+  Y  A  +D
Sbjct: 282 DAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQWD 341

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
           G + + ++M A  +KPN   +N L+DT G+  R  Q    + +M   G  P+  T+ SL+
Sbjct: 342 GTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLI 401

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL------------AMCAD-------- 387
            A+ RA    + L + ++M+E+    S+  YN +L            A+  D        
Sbjct: 402 EAHCRAGLITEALDLLKQMQERECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLD 461

Query: 388 ---VGYTD------------EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
              V YT             EA E  + MK S+  QP +  + ++    + RG   +A  
Sbjct: 462 PNVVTYTTLVDSYGTSKRYREASEYLKQMK-SQGLQPSTSVYCALANSYAKRGLCEQAME 520

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +F  M + G E NL +L  LI  +G A +  +     + + E+G++PD
Sbjct: 521 VFKSMEKDGVELNLSMLNLLINAFGVAGKYVEAFSVFDYILEVGMSPD 568



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 150/335 (44%), Gaps = 2/335 (0%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLP 216
           +L  S   + YN  +    +   L+ A  L + M   G +PDNV ++ +  +CA+     
Sbjct: 106 QLGVSPGPMAYNAIVGTCAREDRLETALELMNQMRGSGFQPDNVNYTLVFQACAKKRVGV 165

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           +        +   G + D   Y+ +I+AY RAG+ + AF      +      D  ++S+L
Sbjct: 166 DVISRVCANIEQEGLEMDTKLYNDVINAYCRAGDPDKAFQYMGLMQACDLVPDVRSYSSL 225

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           I+        D     Y EMK+   K N+ T N LL    R     QV+ + ++  D GL
Sbjct: 226 IETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGL 285

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
             +  +Y  L+ AY RA   +   + +  MK + +  +  +Y+ L+    +    D    
Sbjct: 286 KLSTFSYGLLIDAYSRAGRLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIR 345

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           + +DM +S N +P+ + F+ +I      G++ +A   F +M + GF+P++    SLI+ +
Sbjct: 346 LLKDMYAS-NIKPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAH 404

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            +A    + +  L ++ E    P       +LN +
Sbjct: 405 CRAGLITEALDLLKQMQERECVPSLHTYNIILNAL 439



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 144/318 (45%), Gaps = 6/318 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFE 224
           +L  + +    K   +++A  LFD +   GV P  + ++ ++ +CAR + L   A+E   
Sbjct: 79  LLSAIAITGLSKESRVEEAMLLFDQLKQLGVSPGPMAYNAIVGTCAREDRL-ETALELMN 137

Query: 225 RMPSFGCDPDALTYSSMIDAYG--RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           +M   G  PD + Y+ +  A    R G V++   +      E   +D   ++ +I  Y  
Sbjct: 138 QMRGSGFQPDNVNYTLVFQACAKKRVG-VDVISRVCANIEQEGLEMDTKLYNDVINAYCR 196

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           AG+ D        M+A  + P++ +Y++L++T+   +R    +  Y EM       N  T
Sbjct: 197 AGDPDKAFQYMGLMQACDLVPDVRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRT 256

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
             +LL AY R    E    + ++ ++ G++LS   Y  L+   +  G  D+A   F +MK
Sbjct: 257 LNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNMK 316

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
             EN   +++ +S ++       +      +  +M  +  +PN F+   LI  YGK  R 
Sbjct: 317 -VENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRL 375

Query: 463 DDVVRALNRLPELGITPD 480
              +R   ++ + G  PD
Sbjct: 376 PQAMRTFAQMDKEGFKPD 393



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 162/378 (42%), Gaps = 6/378 (1%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           LYN  +  + +  D DKA +    M    + PD  ++S+LI    +    + A   +  M
Sbjct: 186 LYNDVINAYCRAGDPDKAFQYMGLMQACDLVPDVRSYSSLIETLVVVRRLDDAEAAYAEM 245

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            S     +  T ++++ AY R   +E    L   A +   ++   ++  LI  Y  AG  
Sbjct: 246 KSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRL 305

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYAS 345
           D     +  MK   V  N   Y+ L+    R  R W     + K+M  + + PN   +  
Sbjct: 306 DQAKAAFHNMKVENVPANAFIYSRLM-VAYRNARQWDGTIRLLKDMYASNIKPNQFIFNI 364

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  YG+       +  + +M ++G +  V  +N+L+      G   EA ++ + M+  E
Sbjct: 365 LIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERE 424

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
            C P   T++ ++       +  E   + +EM   G +PN+   T+L+  YG ++R  + 
Sbjct: 425 -CVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKRYREA 483

Query: 466 VRALNRLPELGITPDDR-FCGCLLNVMTQTPKEELGKLVECVEKSNSKLGY-VVKLLLEE 523
              L ++   G+ P    +C    +   +   E+  ++ + +EK   +L   ++ LL+  
Sbjct: 484 SEYLKQMKSQGLQPSTSVYCALANSYAKRGLCEQAMEVFKSMEKDGVELNLSMLNLLINA 543

Query: 524 QDIEGDFKKEATELFNSI 541
             + G +  EA  +F+ I
Sbjct: 544 FGVAGKY-VEAFSVFDYI 560



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 102/211 (48%), Gaps = 2/211 (0%)

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           +++++K +GV P  + YN ++ T  R  R      +  +M  +G  P+   Y  + +A  
Sbjct: 100 LFDQLKQLGVSPGPMAYNAIVGTCAREDRLETALELMNQMRGSGFQPDNVNYTLVFQACA 159

Query: 352 RARYGEDTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
           + R G D +S V   ++++G+++   LYN ++      G  D+AF+    M++  +  PD
Sbjct: 160 KKRVGVDVISRVCANIEQEGLEMDTKLYNDVINAYCRAGDPDKAFQYMGLMQAC-DLVPD 218

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
             ++SS+I       ++ +AEA + EM    ++ NL  L +L+  Y +    + V + + 
Sbjct: 219 VRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQ 278

Query: 471 RLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
              + G+       G L++  ++  + +  K
Sbjct: 279 DAEDAGLKLSTFSYGLLIDAYSRAGRLDQAK 309


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 156/316 (49%), Gaps = 9/316 (2%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +YN  +  + + RDL  A  +F+ M  R ++PD++T++ LI+      +  +A +    M
Sbjct: 372 IYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEM 431

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G DP   T++++IDAYGRAG +E  F +    +++  + +  +F +++K +   G  
Sbjct: 432 EKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKI 491

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              + + ++M    V PN   YN+++D    +    Q   + ++M  +G+S +  TY  L
Sbjct: 492 PEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLL 551

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L+   +    ++   +   +  +G++  V  YNT+++ C + G TD A E+ ++M   + 
Sbjct: 552 LKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYD- 610

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            +P   T+  +++     G+V + E ++  M+    EP+  +       YG     +  V
Sbjct: 611 IRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSI-------YGTRCENESKV 663

Query: 467 RALNR-LPELGITPDD 481
            +L + + E GI  DD
Sbjct: 664 ASLKKEMSEKGIAFDD 679



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 155/333 (46%), Gaps = 7/333 (2%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD--LDKAERLFDDMLDR 194
           I+ + +T    +   L+ F   LK    +  Y  ++ +   C+D  + KAE++ + ++  
Sbjct: 305 ILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHT 364

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G+ P    ++TLI+          A   FE+M S    PD +TY+++I+   +   +  A
Sbjct: 365 GLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEA 424

Query: 255 FGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
             L      EK  +DP+   F+TLI  YG AG  + C  V  +M+  G+K N+I++ +++
Sbjct: 425 EDLV--MEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVV 482

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
               +  +  +   I  +M    + PN   Y S++ AY  +   E    +  +MK  G+ 
Sbjct: 483 KAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVS 542

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            S+  YN LL         DEA E+  ++ +++  +PD  +++++I+ C  +G    A  
Sbjct: 543 ASIFTYNLLLKGLCKNSQIDEAEELIYNL-TNQGLRPDVVSYNTIISACCNKGDTDRALE 601

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           +  EM +    P L     L+   G A R  D+
Sbjct: 602 LLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDM 634



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 153/350 (43%), Gaps = 36/350 (10%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I YN  +    K  DL+   RL D ML  G KP+ VT++ L+S        ++     + 
Sbjct: 231 ITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDE 290

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP--------------- 270
           M S+   PD  TYS + D   R G+      L+  +  +   I                 
Sbjct: 291 MTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGK 350

Query: 271 --------------------NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
                                 ++TLI  Y    +  G  +++E+MK+  ++P+ ITYN 
Sbjct: 351 VAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNA 410

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L++ + + +   + + +  EM  +G+ P+  T+ +L+ AYGRA   E   +V  +M++KG
Sbjct: 411 LINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKG 470

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
           ++ +V  + +++      G   EA  I +DM   ++  P++  ++S+I      G   +A
Sbjct: 471 IKSNVISFGSVVKAFCKNGKIPEAVAILDDM-IHKDVVPNAQVYNSIIDAYIESGGTEQA 529

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             +  +M  +G   ++F    L++   K  + D+    +  L   G+ PD
Sbjct: 530 FLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPD 579



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 147/328 (44%), Gaps = 40/328 (12%)

Query: 188 FDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMP-SFGCDP-DALTYSSMIDA 244
           F  ++  G +PD   ++  + +C    +L ++A+    RM  S G  P DA +Y+ +I  
Sbjct: 146 FGLLVAAGARPDTFAWNKAVQACVAAGDL-DEALAMLRRMGRSEGAPPPDAFSYNVVIAG 204

Query: 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
             R+G    A  ++D   +     +   ++T+I  +   G+ +    + ++M   G KPN
Sbjct: 205 LWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPN 264

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           ++TYN LL  + RA R  + + +  EMT   + P+  TY+ L     R       LS++ 
Sbjct: 265 VVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFG 324

Query: 365 EMKEKGMQL-----------------------------------SVTLYNTLLAMCADVG 389
           E  +KG+ +                                   +  +YNTL+     V 
Sbjct: 325 ESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVR 384

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
               AF IFE MK S + +PD  T++++I        ++EAE +  EM ++G +P++   
Sbjct: 385 DLQGAFSIFEQMK-SRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETF 443

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGI 477
            +LI  YG+A + +     L+ + + GI
Sbjct: 444 NTLIDAYGRAGQLEKCFTVLSDMQDKGI 471


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 152/318 (47%), Gaps = 1/318 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI Y + ++       + +A +L D+M  RG KPD VT++ L++        ++A+++ 
Sbjct: 15  DVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFL 74

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             MPS+G  P+ +T++ ++ +    G    A  L      +        F+ LI      
Sbjct: 75  NSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRK 134

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     +++ E+M   G  PN ++YN LL    + K+  +     + M   G  P+  TY
Sbjct: 135 GLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTY 194

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            ++L A  +    +  + +  ++  KG    +  YNT++   + VG TD+A E+  +M+ 
Sbjct: 195 NTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMR- 253

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +  +PD  T+SS+I   S  GKV EA   F+++   G +PN F   S++    KAQ+TD
Sbjct: 254 GKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTD 313

Query: 464 DVVRALNRLPELGITPDD 481
             +  L  +   G  P +
Sbjct: 314 RAIDFLAYMISKGCKPTE 331



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 144/297 (48%), Gaps = 7/297 (2%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           + D  L++   PD +T++ LI      +   +A++  + M S GC PD +TY+ +++   
Sbjct: 3   VLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMC 62

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
           + G ++ A    +   +  +   PN  +   +++   + G +     +  EM   G  P+
Sbjct: 63  KEGRLDEAIKFLNSMPS--YGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPS 120

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           ++T+N L++ + R     +   I ++M  +G +PN  +Y  LL  + + +  +  +    
Sbjct: 121 VVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLE 180

Query: 365 EMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
            M  +G    +  YNT+L A+C D G  D A E+   + SS+ C P   T++++I   S 
Sbjct: 181 IMVSRGCYPDIVTYNTMLTALCKD-GKVDAAVELLNQL-SSKGCSPVLITYNTVIDGLSK 238

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            GK  +A  + +EM   G +P++   +SLI    +  + ++ ++  + +   G+ P+
Sbjct: 239 VGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPN 295



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 110/261 (42%), Gaps = 1/261 (0%)

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           +E  +R     C PD +TY+ +I+A      V  A  L D   +   + D   ++ L+  
Sbjct: 1   MEVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNG 60

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
               G  D  +     M + G +PN+IT+N +L +M    R    + +  EM   G SP+
Sbjct: 61  MCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPS 120

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             T+  L+    R       + +  +M   G   +   YN LL         D A +  E
Sbjct: 121 VVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLE 180

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
            M  S  C PD  T+++M+T     GKV  A  + N++   G  P L    ++I    K 
Sbjct: 181 IM-VSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKV 239

Query: 460 QRTDDVVRALNRLPELGITPD 480
            +TD  V  L+ +   G+ PD
Sbjct: 240 GKTDQAVELLHEMRGKGLKPD 260



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 139/315 (44%), Gaps = 38/315 (12%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI +N+ ++          AE+L  +M+ +G  P  VTF+ LI+      L  +A++  E
Sbjct: 86  VITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILE 145

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +MP+ GC P++L+Y+ ++  + +   +       DRA                       
Sbjct: 146 KMPTHGCTPNSLSYNPLLHGFCKEKKM-------DRA----------------------- 175

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                +   E M + G  P+++TYN +L  + +  +      +  +++  G SP   TY 
Sbjct: 176 -----IQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYN 230

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +++    +    +  + +  EM+ KG++  V  Y++L+A  +  G  +EA + F D++  
Sbjct: 231 TVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGF 290

Query: 405 ENCQPDSWTFSS-MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
              +P+++T++S M  +C  + +   A      M+  G +P     T LI+         
Sbjct: 291 -GVKPNAFTYNSIMFGLCKAQ-QTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAK 348

Query: 464 DVVRALNRLPELGIT 478
           + +  LN L   G+ 
Sbjct: 349 EALELLNELCSRGVV 363



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 119/242 (49%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  V+ +N+ +    +   L +A  + + M   G  P++++++ L+         ++A++
Sbjct: 118 SPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQ 177

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
           + E M S GC PD +TY++M+ A  + G V+ A  L ++  ++        ++T+I    
Sbjct: 178 YLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLS 237

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G  D  + +  EM+  G+KP++ITY++L+  + R  +  +    + ++   G+ PN  
Sbjct: 238 KVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAF 297

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY S++    +A+  +  +     M  KG + +   Y  L+   A+ G   EA E+  ++
Sbjct: 298 TYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNEL 357

Query: 402 KS 403
            S
Sbjct: 358 CS 359



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 1/156 (0%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A   L   ++K   S  +I YN  +    K    D+A  L  +M  +G+KPD +T+S+
Sbjct: 208 DAAVELLNQLSSK-GCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSS 266

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           LI+         +A+++F  +  FG  P+A TY+S++    +A   + A        ++ 
Sbjct: 267 LIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKG 326

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
            +    +++ LI+     G     L +  E+ + GV
Sbjct: 327 CKPTEVSYTILIEGIANEGLAKEALELLNELCSRGV 362


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 155/345 (44%), Gaps = 9/345 (2%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +   S +++ YN  +    K + L +A  L  +M   G  P++VT +TL+ 
Sbjct: 17  AMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMD 76

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               +   ++A+E  E M   G D D + Y ++I  +   GN++    L+D    +    
Sbjct: 77  GLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISA 136

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           +   +S L+      G +     V   M   G+ P+++TY  L+D + +  R      + 
Sbjct: 137 NVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLL 196

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             M + G  P+  TY  LL    +     D   + R M EKG +  V  YNTL+    D 
Sbjct: 197 NLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDK 256

Query: 389 GYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           G  DEA ++F  M  +ENC +P+ +TF+ +I      G++++A  +  +M++ G   NL 
Sbjct: 257 GKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLV 316

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 484
               L+    KA +  + +    ++ +LG  P+        D FC
Sbjct: 317 TYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFC 361



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 162/359 (45%), Gaps = 40/359 (11%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           C+D     A  L + M+++G +P NVT++ L+S      L   A +    M   G   D 
Sbjct: 184 CKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADV 243

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVY 293
           +TY++++      G V+ A  L++   + +  ++PN F+   LI      G     + ++
Sbjct: 244 VTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIH 303

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
            +M   G   N++TYN LL    +A +  +   ++K++ D G  PN  TY+ L+  + + 
Sbjct: 304 RKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKM 363

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD--- 410
           R       ++ EM+  G+  ++  YNTL+A     G  ++A  +F++M ++ NC+PD   
Sbjct: 364 RMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNA-NCEPDIIS 422

Query: 411 --------------------------------SWTFSSMITICSCRGKVSEAEAMFNEML 438
                                           + TFS++I   S  G++ EA++    M+
Sbjct: 423 FNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMV 482

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 497
            +GF P+  V  SL++       T +++  L+++   G   D +    +L  +  + +E
Sbjct: 483 ASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQE 541



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 110/229 (48%), Gaps = 1/229 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ YN+ +    K   + +A  L+  +LD G  P++ T+S LI       + N A   F 
Sbjct: 315 LVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFC 374

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M + G +P    Y++++ +  + G++E A  L+    N     D  +F+T+I     AG
Sbjct: 375 EMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAG 434

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           +F     +  +M  +G++P+ +T++ L++ + +     + K+  + M  +G +P+   Y 
Sbjct: 435 DFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYD 494

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA-MCADVGYTD 392
           SLL+         + +++  +M  KG  L   + +T+L  +C  +   D
Sbjct: 495 SLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVD 543



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 4/116 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP--NKAVE 221
           ++I +N  +    K  D    + L   M++ G++PD +TFSTLI+  R++ L   ++A  
Sbjct: 419 DIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLIN--RLSKLGELDEAKS 476

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
             ERM + G  PDAL Y S++      G+      L  +   +   +D    ST++
Sbjct: 477 ALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTIL 532


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 154/347 (44%), Gaps = 36/347 (10%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +    K R    A  LFD+ML RG+ P  VT++TLI+  R      KA E +++M +
Sbjct: 147 NAVLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVA 206

Query: 229 FGCDPDALTYSSMI----------------DAYGRAG-------------------NVEM 253
              DP+ +TY+SMI                DA   AG                   +V  
Sbjct: 207 RQIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNS 266

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           AF LY    N     +   F+TLI  +  A  F    +++ +M   GV P +  YN+L+D
Sbjct: 267 AFVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMD 326

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
              R+    +  ++Y+EMT  GL P+  T + ++R        +        ++E G+ L
Sbjct: 327 GAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNL 386

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           +   YN L+      G  +EA      M +    +P+  ++SS+I   S  GK+  A A+
Sbjct: 387 NAAAYNALIDEYCRNGNLEEALATCTRM-TEVGVEPNVVSYSSLIDGHSKLGKMQIAMAI 445

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           + EM+  G EPN+   T+LI  + K    D   R    + E GI+P+
Sbjct: 446 YTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPN 492



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 144/341 (42%), Gaps = 53/341 (15%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YNV M    +  D++ A  L+ ++L+ G+ P+ V F+TLI         ++A + F  MP
Sbjct: 251 YNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMP 310

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLY----------------------------- 258
            FG  P    Y+S++D   R+G+ + A  LY                             
Sbjct: 311 RFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQ 370

Query: 259 ------DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
                 +  R +   ++  A++ LI  Y   GN +  L     M  +GV+PN+++Y++L+
Sbjct: 371 VAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLI 430

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           D   +  +      IY EM   G+ PN  TY +L+  + +    +     ++EM E G+ 
Sbjct: 431 DGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGIS 490

Query: 373 LSVTLYNTLL-AMCADVGYTDEAFEIFE-------DMKS--------SENCQPDSWTFSS 416
            +    + L+  +C +    D    + E       D+ S         E   P+S  + +
Sbjct: 491 PNAITVSVLVDGLCRENRVQDAVRFVMEHSGIKYSDIHSFFSNFTTEEEPLIPNSAIYMT 550

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI--QC 455
           +I      G+  EA  +F+ M ++G   + F  T LI  QC
Sbjct: 551 LIYGLYLDGQHYEAGKLFSYMRKSGMISDSFTYTLLIRGQC 591



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 171/399 (42%), Gaps = 43/399 (10%)

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           A   L+      G  D  L V+  +  +   P +   N +LD + +A+R      ++ EM
Sbjct: 113 ALGVLVIALSQMGLLDEALYVFRRLWTL---PALPACNAVLDGLVKARRSRCAWELFDEM 169

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G+ P+  TY +L+ A            ++ +M  + +  +V  Y +++ +  + G  
Sbjct: 170 LRRGMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVLCEEGCI 229

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLT 450
            +A  +F+ MK +   +P+ +T++ +++   C+G  V+ A  ++ E+L +G  PN  V T
Sbjct: 230 GDAERLFDAMKEA-GMRPNQYTYNVLMS-GHCQGDDVNSAFVLYQELLNSGLIPNAVVFT 287

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--------EELGKL 502
           +LI  + KA+R  +       +P  G+ P       L++   ++          +E+ +L
Sbjct: 288 TLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRL 347

Query: 503 VECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD---VKKAYCNCLID-LCV 558
             C ++    +  VV+ L +   I+      A      + +D   +  A  N LID  C 
Sbjct: 348 GLCPDEFTCSI--VVRGLCDGGQIQ-----VAARFLEGVREDGVNLNAAAYNALIDEYCR 400

Query: 559 NLNL---LENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSK 615
           N NL   L    ++ E+G    V  ++ S S    SL      LG    A+ I+   ++K
Sbjct: 401 NGNLEEALATCTRMTEVG----VEPNVVSYS----SLIDGHSKLGKMQIAMAIYTEMVAK 452

Query: 616 ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKEL 654
            +E          +  GH K    + G+ + F  H KE+
Sbjct: 453 GIEP--NVVTYTALIHGHAK----NGGIDAAFRFH-KEM 484



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/247 (18%), Positives = 92/247 (37%), Gaps = 56/247 (22%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
            +  A R  + + + GV  +   ++ LI     N    +A+    RM   G +P+ ++YS
Sbjct: 368 QIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYS 427

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMK 297
           S+ID + + G +++A  +Y     +   I+PN   ++ LI  +   G  D     ++EM 
Sbjct: 428 SLIDGHSKLGKMQIAMAIYTEMVAKG--IEPNVVTYTALIHGHAKNGGIDAAFRFHKEMI 485

Query: 298 AIGVKPNMIT-------------------------------------------------- 307
             G+ PN IT                                                  
Sbjct: 486 ENGISPNAITVSVLVDGLCRENRVQDAVRFVMEHSGIKYSDIHSFFSNFTTEEEPLIPNS 545

Query: 308 --YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
             Y  L+  +    + ++   ++  M  +G+  +  TY  L+R      Y  + + +Y +
Sbjct: 546 AIYMTLIYGLYLDGQHYEAGKLFSYMRKSGMISDSFTYTLLIRGQCMLGYVLNAMMLYAD 605

Query: 366 MKEKGMQ 372
           M + G++
Sbjct: 606 MMKIGVK 612


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 132/542 (24%), Positives = 229/542 (42%), Gaps = 61/542 (11%)

Query: 56  PTKHS--------QNPQYPHG-KTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLA 106
           PT HS        +NP    G  + +SPK  +     S  A     +SYD R   L+KL 
Sbjct: 31  PTSHSHHTSIVTCRNPNPNDGYNSRNSPKVGV-----SAEARPAHLQSYDFRETHLMKLL 85

Query: 107 ADLDSCSATE-DDVFSVLRCLGDDFLEQDCVI----------------------ILNNMT 143
               SC A + ++    L CL +     D ++                      IL + T
Sbjct: 86  NR--SCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHT 143

Query: 144 NPDTAAL--------------ALTYFTNKLKAS---KEVILYNVTMKVFRKCRDLDKAER 186
            PD  A               A T   N++KA     +++ YN+ +      R L  A  
Sbjct: 144 EPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALT 203

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           + D +L     P  +T++ LI    +    N+A++  E M + G  PD  TY+++I    
Sbjct: 204 VLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMC 263

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           + G VE A  L     ++    D  +++ L++ +   G +D    +  EM + G +PN +
Sbjct: 264 KEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKV 323

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TY+ L+ ++ R  R  +  ++ K M +  L+P+  +Y  L+ A  +    +  + +   M
Sbjct: 324 TYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYM 383

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
              G    +  YNT+LA     G  ++A EIF  ++    C P+  ++++MI+     G 
Sbjct: 384 ISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGM-GCPPNVSSYNTMISALWSCGD 442

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            S A  M   M+  G +P+     SLI C  +    ++ +  L+ + + G  P       
Sbjct: 443 RSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNI 502

Query: 487 LLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SK 543
           +L  + +  +  + +G   E +EK          LL+E     G ++ EA EL NS+ S+
Sbjct: 503 VLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAG-WRTEAMELANSLFSR 561

Query: 544 DV 545
           DV
Sbjct: 562 DV 563



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 145/318 (45%), Gaps = 5/318 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  ++   K   +++A  L   +  +G +PD ++++ L+         ++  +    M 
Sbjct: 255 YNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMF 314

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S GC+P+ +TYS +I +  R G ++ A  +      ++   D  ++  LI      G  D
Sbjct: 315 SRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLD 374

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + + + M + G  P+++ YN +L  + +     Q   I+ ++   G  PN ++Y +++
Sbjct: 375 LAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMI 434

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSEN 406
            A          L +   M  KG+      YN+L++ +C D G  +EA  + +DM+ S  
Sbjct: 435 SALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRD-GLVEEAIGLLDDMEQS-G 492

Query: 407 CQPDSWTFS-SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
            +P   +++  ++ +C  R ++ +A  MF EM+E G  PN      LI+  G A    + 
Sbjct: 493 FRPTVISYNIVLLGLCKVR-RIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEA 551

Query: 466 VRALNRLPELGITPDDRF 483
           +   N L    +   D F
Sbjct: 552 MELANSLFSRDVISQDSF 569



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 134/302 (44%), Gaps = 36/302 (11%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           + AA  +T  T+K     +VI YN+ ++ F      D+ E+L  +M  RG +P+ VT+S 
Sbjct: 269 ERAAELITSLTSK-GCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSI 327

Query: 206 LIS-CARMNNL----------------PNK------------------AVEWFERMPSFG 230
           LIS   R   +                P+                   A+   + M S G
Sbjct: 328 LISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNG 387

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           C PD + Y++++ A  + GN   A  ++++ R      + ++++T+I    + G+    L
Sbjct: 388 CLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRAL 447

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            +   M + G+ P+ ITYN+L+  + R     +   +  +M  +G  P   +Y  +L   
Sbjct: 448 GMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGL 507

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
            + R  +D + ++ EM EKG + + T Y  L+      G+  EA E+   + S +    D
Sbjct: 508 CKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVISQD 567

Query: 411 SW 412
           S+
Sbjct: 568 SF 569


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 152/315 (48%), Gaps = 2/315 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRG-VKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           Y   +  + K   +D+A ++FD+ML +G VKP+ V ++ LI         + A+ + +RM
Sbjct: 184 YGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRM 243

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G      TY+ ++ A    G    A+ L +    +    D   ++ LI  +   GN 
Sbjct: 244 VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNV 303

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              L ++E M   GV+  ++TY  L+  + +  +  +   ++ E    G+ P+   Y +L
Sbjct: 304 KKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 363

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + ++  +   +    +  EM++K +      YNTL+     +G  DEA ++ ++M +   
Sbjct: 364 INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM-TERG 422

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            QPD  T++++I+  S +G V +A  + NEM+  GF P L    +LIQ   K  + DD  
Sbjct: 423 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 482

Query: 467 RALNRLPELGITPDD 481
             +  + E GITPDD
Sbjct: 483 NMVKEMVENGITPDD 497



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 1/236 (0%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A  L ++M  +G+ PD  T++ LI+         KA+E FE M   G     +TY+++I
Sbjct: 270 EAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALI 329

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            A  + G V+    L+D A     R D   ++ LI  + T+GN D    +  EM+   + 
Sbjct: 330 YALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIA 389

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P+ +TYN L+  +    R  + + +  EMT+ G+ P+  TY +L+  Y      +D L +
Sbjct: 390 PDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRI 449

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
             EM  KG   ++  YN L+      G  D+A  + ++M  +    PD  T+ S+I
Sbjct: 450 RNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN-GITPDDSTYISLI 504



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 138/299 (46%), Gaps = 11/299 (3%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LF DM    +     TF+ ++        P +A+E   +MP     P+A+TY+++I  + 
Sbjct: 101 LFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFC 156

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIG-VKP 303
             G V+ A  +  R   E+  I PN ++  T+I  +   G  D  + V++EM   G VKP
Sbjct: 157 SRGRVQAALDIM-REMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKP 215

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKE-MTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
             + YN L+       +      +Y++ M + G++    TY  L+ A      G +   +
Sbjct: 216 EAVMYNALIGGYCDQGK-LDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 274

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
             EM  KG+   V  YN L+      G   +A EIFE+M S    +    T++++I   S
Sbjct: 275 VEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM-SRRGVRATVVTYTALIYALS 333

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
            +G+V E + +F+E +  G  P+L +  +LI  +  +   D     +  + +  I PDD
Sbjct: 334 KKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 392



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 16/259 (6%)

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           L +Y  MK++ +  +  + + LL  +  A        ++ +M    L     T+  +LR 
Sbjct: 68  LRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLRH 123

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
              A      L + R+M       +   YNT++A     G    A +I  +M+      P
Sbjct: 124 LCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAP 179

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           + +T+ ++I+     G+V EA  +F+EML  G  +P   +  +LI  Y    + D  +  
Sbjct: 180 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 239

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG---YVVKLLLEEQ 524
            +R+ E G+         L++ +    +  E  +LVE  E     L    +   +L+   
Sbjct: 240 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVE--EMGGKGLAPDVFTYNILINGH 297

Query: 525 DIEGDFKKEATELFNSISK 543
             EG+ KK A E+F ++S+
Sbjct: 298 CKEGNVKK-ALEIFENMSR 315


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 164/387 (42%), Gaps = 71/387 (18%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I YN  +    K  DL+   RL+  ML  G+KP+ +T++ L+S         +     + 
Sbjct: 224 ITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDE 283

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA------------- 272
           M S    PD  TYS + D + R G+ +    L++ +  +  +I                 
Sbjct: 284 MASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGK 343

Query: 273 ----------------------FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
                                 ++TLI  Y   G+ +G  +++++MK+  ++P+ ITYN 
Sbjct: 344 ISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNA 403

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L++ +G+ +R  +   +  EM  NG++P+  T+ +L+ AYGRA   E    +  +M+EKG
Sbjct: 404 LINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKG 463

Query: 371 MQLSVT-----------------------------------LYNTLLAMCADVGYTDEAF 395
           ++ +V                                    +YN ++    + G TD+AF
Sbjct: 464 LKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAF 523

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            + E MKSS    P   T++ +I     + ++SEAE + + +   G  P++    +LI  
Sbjct: 524 MLAEKMKSS-GVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISA 582

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDR 482
                 TD  +     + + GI P  R
Sbjct: 583 CCYRSNTDRALELEKEMWKCGIKPSPR 609



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 160/358 (44%), Gaps = 48/358 (13%)

Query: 188 FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCD----PDALTYSSMID 243
           F+ ++    +PD  T++  +    +    ++AV    RM   GCD    P+A +Y+ +I 
Sbjct: 140 FELLVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRM---GCDGAPAPNAFSYNVVIA 196

Query: 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
              +AG    A  L+D    +    +   ++T+I  +   G+ +    ++ +M   G+KP
Sbjct: 197 GLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKP 256

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           N+ITYN LL  + RA R  +   +  EM    + P+  TY+ L   + R    +  LS++
Sbjct: 257 NVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLF 316

Query: 364 REMKEKGMQL-----------------------------------SVTLYNTLLAMCADV 388
            E  +KG+++                                   +  +YNTL+     +
Sbjct: 317 EESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQI 376

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G  + AF IF+ MK S   +PD  T++++I       +++EA  +  EM + G  P++  
Sbjct: 377 GDLEGAFSIFQQMK-SRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVET 435

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 506
             +LI  YG+A + +     L+ + E G+ P+    G ++N   +      GK++E V
Sbjct: 436 FNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKN-----GKILEAV 488



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/349 (21%), Positives = 152/349 (43%), Gaps = 3/349 (0%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDML 192
           C I+LN +      + A       + +   +  ++YN  +  + +  DL+ A  +F  M 
Sbjct: 331 CSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMK 390

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
            R ++PD++T++ LI+         +A +    M   G +P   T++++IDAYGRAG +E
Sbjct: 391 SRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLE 450

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
             F +    + +  + +  ++ +++  +   G     + + ++M    V P    YN ++
Sbjct: 451 KCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAII 510

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           D         Q   + ++M  +G+ P+  TY  L++   +     +   +   ++  G+ 
Sbjct: 511 DAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLA 570

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
             V  YNTL++ C     TD A E+ ++M      +P   T+  + +     G+V E E 
Sbjct: 571 PDVISYNTLISACCYRSNTDRALELEKEMWKC-GIKPSPRTYRMLFSSLGGAGRVHEMEN 629

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           ++ +ML+    P   +   ++  Y K      V      + + GI   D
Sbjct: 630 LYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDKGIAVGD 678



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 140/305 (45%), Gaps = 1/305 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YNV +    K      A +LFD+M ++ V P+++T++T+I               + +M 
Sbjct: 191 YNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQML 250

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P+ +TY+ ++    RAG +     + D   + K   D   +S L   +   G+  
Sbjct: 251 RHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQ 310

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+++EE    GVK    T + LL+ + +  +  + + + + + ++GL      Y +L+
Sbjct: 311 TMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLI 370

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             Y +    E   S++++MK + ++     YN L+     V    EA ++  +M+ +   
Sbjct: 371 NGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKN-GV 429

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P   TF+++I      G++ +   + ++M E G +PN+    S++  + K  +  + V 
Sbjct: 430 NPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVA 489

Query: 468 ALNRL 472
            L+ +
Sbjct: 490 ILDDM 494



 Score = 39.7 bits (91), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 9/193 (4%)

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           +N  +  C   G  DEA  +   M       P++++++ +I      G   +A  +F+EM
Sbjct: 155 WNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDAVKLFDEM 214

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK- 496
            E    PN     ++I  + K    +   R  +++   G+ P+      LL+ + +  + 
Sbjct: 215 PEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRM 274

Query: 497 -EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID 555
            E    L E   +     G+   +L +     GD +   +    S+ K VK     C I 
Sbjct: 275 GETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSI- 333

Query: 556 LCVNLNLLENACK 568
                 LL   CK
Sbjct: 334 ------LLNGLCK 340


>gi|115480461|ref|NP_001063824.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|32526676|dbj|BAC79199.1| chloroplast RNA processing 1 -like protein [Oryza sativa Japonica
           Group]
 gi|113632057|dbj|BAF25738.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|125606498|gb|EAZ45534.1| hypothetical protein OsJ_30195 [Oryza sativa Japonica Group]
 gi|215768653|dbj|BAH00882.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 543

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 154/330 (46%), Gaps = 13/330 (3%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           LY   + +  K      A  L D+M +R V         LI       +P++A + F RM
Sbjct: 146 LYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFRRM 205

Query: 227 PSFGCD-PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
             +G   PD  T +S++ A  +      A  ++D  ++  +  D   ++TL+  +  +G 
Sbjct: 206 EEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKS-VFTPDVVLYTTLVHAWCRSGR 264

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    V+ EM+  GV PN+ TY  ++D M RA +  + + +  +M D+G  PN  T+ +
Sbjct: 265 LNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNA 324

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT--DEAFEIFEDMKS 403
           ++RA+ +A   E  L V+ +M++ G +  +  YN L+      G +  D A ++   M  
Sbjct: 325 IMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRM-I 383

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           ++ C PD  TF+ M+ +    G V+ A  ++  M E   +PN+     L++ +   +  D
Sbjct: 384 AKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMD 443

Query: 464 DVVRALNRLPELGITPD--------DRFCG 485
            V+R    +   G+ P+        + FCG
Sbjct: 444 MVLRIKKDMDAQGVEPNVNTYAALIEAFCG 473



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 129/278 (46%), Gaps = 38/278 (13%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-------SCARMNN 214
           + +V+LY   +  + +   L++AER+F +M   GV P+  T++ +I          R   
Sbjct: 246 TPDVVLYTTLVHAWCRSGRLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQE 305

Query: 215 L----------PNKA------------------VEWFERMPSFGCDPDALTYSSMIDAYG 246
           L          PN A                  ++   +M   GC+PD +TY+ +++ + 
Sbjct: 306 LLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHC 365

Query: 247 RAG--NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
             G  N++ A  +  R   +    D + F+ ++KL    GN +    +YE M+ +  KPN
Sbjct: 366 GKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPN 425

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGEDTLSVY 363
           ++TYN L+      K    V  I K+M   G+ PN NTYA+L+ A+ GR  +    +++ 
Sbjct: 426 VVTYNLLMRLFNLEKSMDMVLRIKKDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTLR 485

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
             ++EK ++ +  +Y+ +LA+    G      E+ E M
Sbjct: 486 EMVEEKALKPTKPVYDMVLALLRKAGQLRRHEELVEMM 523



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 112/267 (41%), Gaps = 38/267 (14%)

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
           LP     +   +PS   D     Y++MID   +  +  +A  L D  R     I      
Sbjct: 124 LPEAVAFFHHVLPSLPPDSLPALYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLIL 183

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            LI+ Y                                    RA+ P +   +++ M + 
Sbjct: 184 ALIRRY-----------------------------------VRAEMPSEASDLFRRMEEY 208

Query: 335 GL-SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
           G  +P+  T ASLL A  + R   +  +++   K       V LY TL+      G  +E
Sbjct: 209 GAGAPDPATLASLLGALSKKRLASEAQAMFDSYKSV-FTPDVVLYTTLVHAWCRSGRLNE 267

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A  +F +M+ +    P+ +T++++I      G+V  A+ +  +M+++G  PN     +++
Sbjct: 268 AERVFAEMQQA-GVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIM 326

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPD 480
           + + KA R++ V++  N++ +LG  PD
Sbjct: 327 RAHVKAGRSEQVLQVHNQMRQLGCEPD 353


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 161/361 (44%), Gaps = 33/361 (9%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +    K +++D+A+ L D+ +  G  PD VT+S L          ++A E  + M 
Sbjct: 83  YNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMS 142

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P+ +TY+++ID   +A   E A+ L +   +  +  D   ++ ++      G  D
Sbjct: 143 GNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLD 202

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L + E M   G  P++ITY  L++ + R  R  +   I+KEM     + +   Y SL+
Sbjct: 203 KALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLV 262

Query: 348 RAY------------------------------GRARYG--EDTLSVYREMKEKGMQLSV 375
             Y                              G  + G  ++  +V+ +M  +G   ++
Sbjct: 263 NGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNI 322

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YN ++      G  DEAF   E M S+  C PD  +++ +I       K  EA  + +
Sbjct: 323 KTYNIVMDGLCKHGKVDEAFPFLESMHSA-GCVPDVVSYNIIIDGLFKASKPKEARQVLD 381

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
           +M++AG  P+     +L+  + K +R DD V  L  + + G+ PD+     L++ ++QT 
Sbjct: 382 QMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTN 441

Query: 496 K 496
           +
Sbjct: 442 R 442



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 143/324 (44%), Gaps = 4/324 (1%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
           N+ K + +V  YN+ +    K    DKA  +  +M+DRGV PD VTF++++         
Sbjct: 2   NERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKF 61

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
            +A      M    C P   TY+++I    +  NV+ A  L D   +  +  D   +S L
Sbjct: 62  ERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSIL 121

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
                  G  D    + +EM   G  PN++TYN L+D + +A +  +   + + +  +G 
Sbjct: 122 ADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGF 181

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            P+  TY  ++    +    +  L +   M ++G   SV  Y  L+      G  DEA  
Sbjct: 182 VPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHH 241

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           IF++M  S++C  D+  + S++       +  EA+ + + +      P + V  +L+  Y
Sbjct: 242 IFKEM-VSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGT---PYIDVYNALMDGY 297

Query: 457 GKAQRTDDVVRALNRLPELGITPD 480
            K  R D++      +   G  P+
Sbjct: 298 CKEGRLDEIPNVFEDMACRGCVPN 321



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 146/344 (42%), Gaps = 32/344 (9%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y + +    K   LDKA ++ + ML RG  P  +T++ L+         ++A   F
Sbjct: 184 DVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIF 243

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW---------------RI 268
           + M S  C  DAL Y S+++ Y ++   + A  + D  R   +               R+
Sbjct: 244 KEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRL 303

Query: 269 D--PNAFSTL--------IKLYGTA-------GNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           D  PN F  +        IK Y          G  D      E M + G  P++++YN +
Sbjct: 304 DEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNII 363

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +D + +A +P + + +  +M   G+ P+  TY +L+  + +    +D + + + M + G+
Sbjct: 364 IDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGV 423

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
                 YNTL++  +      +A+E+  +M  +        T++++I      G + +A 
Sbjct: 424 DPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQAL 483

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
            + + M   G E N       I    K  R D+    L+ +  L
Sbjct: 484 LLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTL 527



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 156/363 (42%), Gaps = 26/363 (7%)

Query: 138 ILNNMTNPDTAALALTYFT--------NKLKASKEVI----------LYNVTMKVFRKCR 179
           I   M + D  A AL Y +        ++ K +++V+          +YN  M  + K  
Sbjct: 242 IFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEG 301

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
            LD+   +F+DM  RG  P+  T++ ++     +   ++A  + E M S GC PD ++Y+
Sbjct: 302 RLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYN 361

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +ID   +A   + A  + D+        D   ++TL+  +     FD  + + + M   
Sbjct: 362 IIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKA 421

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGED 358
           GV P+ +TYN L+  + +  R      +  EM  NG +     TY +++    +    + 
Sbjct: 422 GVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQ 481

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            L +   M   G++ +   YN  +      G  DEA  +  +M +      D  +++++I
Sbjct: 482 ALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR----DEVSYTTVI 537

Query: 419 TICSCRG-KVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
            I  C+  ++  A  +  EM+   G          LI  + K +R D+ +  L  + + G
Sbjct: 538 -IGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRG 596

Query: 477 ITP 479
            +P
Sbjct: 597 CSP 599



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 151/344 (43%), Gaps = 9/344 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN+ +    K     +A ++ D M+  G+ PD VT++TL++        + AV   
Sbjct: 356 DVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGIL 415

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL-YDRARNEKWRIDPNAFSTLIKLYGT 282
           + M   G DPD +TY+++I    +   +  A+ L ++  RN         ++T+I     
Sbjct: 416 KNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCK 475

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G     L + + M   GV+ N +TYN  +D + +  R  +  ++  EM       +  +
Sbjct: 476 EGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDT---LRDEVS 532

Query: 343 YASLLRAYGRARYGEDTLSVYREMKE-KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           Y +++    +A   +    + REM   KG+ ++   +N L+         DEA  + E M
Sbjct: 533 YTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELM 592

Query: 402 KSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
                C P   T++ +IT C C+  KV +A  +F+EM   G   +    T LI       
Sbjct: 593 -VQRGCSPSVITYNMVIT-CLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQG 650

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCL-LNVMTQTPKEELGKLV 503
           R  + ++ L  +       DD  C  L L +  Q   EE  +L+
Sbjct: 651 RGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELL 694



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 123/308 (39%), Gaps = 35/308 (11%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + YN  M  F K    D A  +  +M+  GV PDNVT++TLIS     N    A E  
Sbjct: 391 DAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELM 450

Query: 224 ERMPSFGCDPDALT-YSSMIDAYGRAGNVEMAFGLYDR-------ARNEKWRI------- 268
             M   GC   A T Y+++ID   + G ++ A  L D        A    + I       
Sbjct: 451 HEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCK 510

Query: 269 ------------------DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYN 309
                             D  +++T+I     A   D    +  EM A+ G+     T+N
Sbjct: 511 EGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFN 570

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            L+D   + KR  +  T+ + M   G SP+  TY  ++    +    +    ++ EM  +
Sbjct: 571 LLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVR 630

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G+  S   Y  L+      G   EA ++ E+M SS +C+ D      +      +G+  E
Sbjct: 631 GIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASS-DCEIDDLKCRKLYLALRGQGRGEE 689

Query: 430 AEAMFNEM 437
           A  +   M
Sbjct: 690 AAELLRRM 697



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 49/112 (43%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L     +   S  VI YN+ +    K   +DKA  LFD+M  RG+   +V+++ LI 
Sbjct: 585 ALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIY 644

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR 260
                    +A++  E M S  C+ D L    +  A    G  E A  L  R
Sbjct: 645 GLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRR 696


>gi|297794571|ref|XP_002865170.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311005|gb|EFH41429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 468

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 167/333 (50%), Gaps = 2/333 (0%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           +L    +VI YN  +K + +   +D+A  +   M + G++PD  T+++LIS A  N + N
Sbjct: 41  RLGVLPDVITYNTLIKGYSRFIGIDEAYAVTRRMREAGIEPDVATYNSLISGAAKNLMLN 100

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG-LYDRARNEKWRIDPNAFSTL 276
           + ++ F+ M   G  PD  +Y++++  Y R G    AF  L++  R        + ++ L
Sbjct: 101 RVLQLFDEMLHSGLSPDMWSYNTLMSCYFRLGKHGEAFRILHEDIRLAGLVPGVDTYNIL 160

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           +     +G+ D  + +++ +K+  VKP ++TYN L++ + +++R   V  + +E+   G 
Sbjct: 161 LDALCKSGHTDNAIELFKHLKS-RVKPELMTYNILINGLCKSRRVGSVNWMLRELRKAGY 219

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
           +PN  TY ++L+ Y + +  E  L ++ +MK++G          +++     G  +EA+ 
Sbjct: 220 TPNAVTYTTMLKMYFKTKRIEKGLELFLKMKKEGYTFDGYANCAVVSALIKTGRAEEAYG 279

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
              ++  S     D  ++++++ +    G +   + +  E+   G +P+ +  T ++   
Sbjct: 280 CMNELVRSGTRSQDIVSYNTLLNMYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGL 339

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
            K   T    + L R+ E+G+ P    C CL++
Sbjct: 340 LKIGHTGGAEKHLARIGEMGMQPSIATCNCLID 372



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 119/232 (51%), Gaps = 5/232 (2%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   ++TLIK Y      D    V   M+  G++P++ TYN+L+    +     +V  ++
Sbjct: 47  DVITYNTLIKGYSRFIGIDEAYAVTRRMREAGIEPDVATYNSLISGAAKNLMLNRVLQLF 106

Query: 329 KEMTDNGLSPNWNTYASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            EM  +GLSP+  +Y +L+  Y R  ++GE    ++ +++  G+   V  YN LL     
Sbjct: 107 DEMLHSGLSPDMWSYNTLMSCYFRLGKHGEAFRILHEDIRLAGLVPGVDTYNILLDALCK 166

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNL 446
            G+TD A E+F+ +KS    +P+  T++ +I  +C  R +V     M  E+ +AG+ PN 
Sbjct: 167 SGHTDNAIELFKHLKS--RVKPELMTYNILINGLCKSR-RVGSVNWMLRELRKAGYTPNA 223

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
              T++++ Y K +R +  +    ++ + G T D      +++ + +T + E
Sbjct: 224 VTYTTMLKMYFKTKRIEKGLELFLKMKKEGYTFDGYANCAVVSALIKTGRAE 275



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 91/186 (48%), Gaps = 9/186 (4%)

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           MK  G+   ++  N  +D++ + +   + +T+  +    G+ P+  TY +L++ Y R   
Sbjct: 6   MKFPGISTKLL--NISVDSLCKFRNLEKAETLLIDGIRLGVLPDVITYNTLIKGYSRFIG 63

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            ++  +V R M+E G++  V  YN+L++  A     +   ++F++M  S    PD W+++
Sbjct: 64  IDEAYAVTRRMREAGIEPDVATYNSLISGAAKNLMLNRVLQLFDEMLHS-GLSPDMWSYN 122

Query: 416 SMITICSCRGKVSEAEAMFNEMLE-AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL-- 472
           ++++     GK  EA  + +E +  AG  P +     L+    K+  TD+ +     L  
Sbjct: 123 TLMSCYFRLGKHGEAFRILHEDIRLAGLVPGVDTYNILLDALCKSGHTDNAIELFKHLKS 182

Query: 473 ---PEL 475
              PEL
Sbjct: 183 RVKPEL 188



 Score = 47.0 bits (110), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 51/97 (52%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S++++ YN  + ++ K  +LD  + L +++  +G+KPD+ T + +++          A +
Sbjct: 291 SQDIVSYNTLLNMYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLKIGHTGGAEK 350

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
              R+   G  P   T + +ID   +AG+V+ A  L+
Sbjct: 351 HLARIGEMGMQPSIATCNCLIDGLCKAGHVDRAMRLF 387


>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
 gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
          Length = 534

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 147/313 (46%), Gaps = 2/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  + +  K +    A  L D M  R V+   VTFS L+       L  +AV  F RM 
Sbjct: 151 YNEMIDLAGKVKQFGLAWYLIDLMKARNVEITVVTFSMLVRRYVRAGLAAEAVHAFNRME 210

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
            +GC+ D + +S++I    +      A   +D  ++ K+  D   +++L+  +  AG+  
Sbjct: 211 DYGCNADIIAFSNVISILCKKRRAVEAQSFFDNLKH-KFEPDVIVYTSLVHGWCRAGDIS 269

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              +V+ EMK  G+ PN+ TY+ ++D + R+ +  +   ++ EM D G +PN  T+ +L+
Sbjct: 270 EAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPNSVTFNNLI 329

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R + RA   E  L VY +MK       +  YN L+          EA ++   M +  +C
Sbjct: 330 RVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIETHCKDDNLGEAIKVLNSM-AKNDC 388

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P++ +F+ +    +    V+ A  MF  M E G +PN      L++ +   +  D + +
Sbjct: 389 TPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKPNTVTYNILMRMFAVPKSADMIFK 448

Query: 468 ALNRLPELGITPD 480
               + E  + P+
Sbjct: 449 LKKEMDEEEVEPN 461



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 142/296 (47%), Gaps = 1/296 (0%)

Query: 148 AALALTYFTN-KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           A  A ++F N K K   +VI+Y   +  + +  D+ +AE +F +M   G+ P+  T+S +
Sbjct: 234 AVEAQSFFDNLKHKFEPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIV 293

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
           I     +    +A + F  M   GC+P+++T++++I  + RAG  E    +Y++ +  + 
Sbjct: 294 IDALCRSGQITRAHDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRC 353

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             D   ++ LI+ +    N    + V   M      PN  ++N +   + +++       
Sbjct: 354 AADLITYNFLIETHCKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHR 413

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           ++  M + G  PN  TY  L+R +   +  +    + +EM E+ ++ +   Y  L+A+  
Sbjct: 414 MFARMKEVGCKPNTVTYNILMRMFAVPKSADMIFKLKKEMDEEEVEPNFNTYRELIALYC 473

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            +G+ + A+  F +M   +  +P    +  ++      G++ + E + ++M+E GF
Sbjct: 474 GMGHWNHAYMFFREMIDEKCIKPSMPLYKMVLEELRKAGQLKKHEELVDKMVERGF 529



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 103/217 (47%), Gaps = 2/217 (0%)

Query: 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
           E +   P  ++ +I L G    F     + + MKA  V+  ++T++ L+    RA    +
Sbjct: 142 EGFEHSPQPYNEMIDLAGKVKQFGLAWYLIDLMKARNVEITVVTFSMLVRRYVRAGLAAE 201

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
               +  M D G + +   +++++    + R   +  S +  +K K  +  V +Y +L+ 
Sbjct: 202 AVHAFNRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFDNLKHK-FEPDVIVYTSLVH 260

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
                G   EA  +F +MK +    P+ +T+S +I      G+++ A  +F EML+AG  
Sbjct: 261 GWCRAGDISEAESVFREMKMA-GISPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCN 319

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           PN     +LI+ + +A RT+ V++  N++  L    D
Sbjct: 320 PNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAAD 356


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 159/337 (47%), Gaps = 16/337 (4%)

Query: 157 NKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
           N +K SK   ++ ++N+ + ++ KC + + A+++FD+M D+ V   N+     +   R  
Sbjct: 128 NHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYE 187

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
               +A    E+M   G  PD  T+  M++A   A NV+    L+    N  W  D    
Sbjct: 188 ----EAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVG 243

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           + LI ++   G  D  L V+  +     + ++IT+ +++  + R ++  Q   +++ M +
Sbjct: 244 TALINMHIKCGGVDDALKVFNNLP----RRDLITWTSMITGLARHRQFKQACNLFQVMEE 299

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
            G+ P+   + SLL+A       E    V+  MKE G+   + +   LL+M    G  ++
Sbjct: 300 EGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMED 359

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A E+F  +K        SWT  +MI   +  G++ EA   FN+M+E+G EPN     S++
Sbjct: 360 ALEVFNLVKGRNVV---SWT--AMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSIL 414

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
               +        +  +R+ + G   DDR    LL++
Sbjct: 415 GACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSM 451



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 165/374 (44%), Gaps = 42/374 (11%)

Query: 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVE 221
           K+V  +N+ +  + + R  ++A RL + M+  GVKPD  TF  ++ +CA   N+ +K  E
Sbjct: 168 KDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNV-DKGGE 226

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F  + + G D D    +++I+ + + G V+ A  ++    N   R D   ++++I    
Sbjct: 227 LFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVF----NNLPRRDLITWTSMITGLA 282

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
               F    N+++ M+  GV+P+ + + +LL      +   Q K ++  M + GL     
Sbjct: 283 RHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIY 342

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
              +LL  Y +    ED L V+  +K +    +V  +  ++A  A  G  +EAF  F  M
Sbjct: 343 VGTALLSMYTKCGSMEDALEVFNLVKGR----NVVSWTAMIAGFAQHGRMEEAFLFFNKM 398

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF------------------- 442
             S   +P+  TF S++  CS    + +   + + +++AG+                   
Sbjct: 399 IES-GIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGS 457

Query: 443 ------------EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
                       + N+    ++I  Y + ++ D+ V     L + GI PD      +LNV
Sbjct: 458 LMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNV 517

Query: 491 MTQTPKEELGKLVE 504
                  ELGK V+
Sbjct: 518 CKSPDALELGKWVQ 531



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/414 (22%), Positives = 172/414 (41%), Gaps = 36/414 (8%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILY--NVTMKVFRKCRDLDKAERLFDDMLDRG 195
           ILN   +PD   L     +  ++A  E  L+  N  + +F  C DL  A  LF+DM +R 
Sbjct: 514 ILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPER- 572

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
              D V+++T+I+    +     A ++F+ M   G  PD +T++ +++A      +    
Sbjct: 573 ---DLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGR 629

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L+          D    + LI +Y   G+ D    V+  +     K N+ ++ +++   
Sbjct: 630 RLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLP----KKNVYSWTSMITGY 685

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +  R  +   ++ +M   G+ P+W T+   L A   A   ++ L  +  MK+  ++  +
Sbjct: 686 AQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKDFNIEPRM 745

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y  ++ +    G   EA E    M+     +PDS  + +++  C     V  AE +  
Sbjct: 746 EHYGCMVDLFGRAGLLHEAVEFINKMQ----VKPDSRLWGALLGACQVHLDVELAEKVAQ 801

Query: 436 EMLEAGFEPN---LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP---------DDR- 482
           + LE   +PN   ++V+ S I  Y  A    +V +    + + G+           D R 
Sbjct: 802 KKLE--LDPNDDGVYVILSNI--YAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRV 857

Query: 483 --FCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEA 534
             FC    +  T    EE+   +  +     KLGYV        D+E   K+ A
Sbjct: 858 HIFCS---DDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHA 908



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 119/262 (45%), Gaps = 9/262 (3%)

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           TYSS++    +  N+     +++  +  K + D   ++ LI +Y   GN +    +++EM
Sbjct: 106 TYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEM 165

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
                  ++ ++N LL    + +R  +   ++++M  +G+ P+  T+  +L A   A+  
Sbjct: 166 P----DKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNV 221

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           +    ++  +   G    + +   L+ M    G  D+A ++F ++      + D  T++S
Sbjct: 222 DKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLP-----RRDLITWTS 276

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           MIT  +   +  +A  +F  M E G +P+     SL++     +  +   R   R+ E+G
Sbjct: 277 MITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVG 336

Query: 477 ITPDDRFCGCLLNVMTQTPKEE 498
           +  +      LL++ T+    E
Sbjct: 337 LDTEIYVGTALLSMYTKCGSME 358



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 5/191 (2%)

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           AG     + V   + +  ++ +  TY++LL    + K     + I+  +  + + P+   
Sbjct: 82  AGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFM 141

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           +  L+  Y +         ++ EM +K     V  +N LL         +EAF + E M 
Sbjct: 142 WNMLISMYAKCGNTNSAKQIFDEMPDK----DVYSWNLLLGGYVQHRRYEEAFRLHEQM- 196

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
             +  +PD +TF  M+  C+    V +   +F+ +L AG++ +LFV T+LI  + K    
Sbjct: 197 VQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGV 256

Query: 463 DDVVRALNRLP 473
           DD ++  N LP
Sbjct: 257 DDALKVFNNLP 267


>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g04810, chloroplastic; AltName: Full=Maize PPR4
           homolog; Short=AtPPR4; Flags: Precursor
 gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
           thaliana]
 gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 952

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 164/356 (46%), Gaps = 5/356 (1%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           C+I L       + AL ++    +      +  Y++ +  F K +D   A  +F+DM+  
Sbjct: 489 CLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKE 548

Query: 195 GVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           G+KPD + ++ +IS  C  M N+ ++A++  + M      P   T+  +I  Y ++G++ 
Sbjct: 549 GMKPDVILYNNIISAFCG-MGNM-DRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMR 606

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            +  ++D  R        + F+ LI         +  + + +EM   GV  N  TY  ++
Sbjct: 607 RSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIM 666

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                     +    +  + + GL  +  TY +LL+A  ++   +  L+V +EM  + + 
Sbjct: 667 QGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIP 726

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +  +YN L+   A  G   EA ++ + MK  E  +PD  T++S I+ CS  G ++ A  
Sbjct: 727 RNSFVYNILIDGWARRGDVWEAADLIQQMKK-EGVKPDIHTYTSFISACSKAGDMNRATQ 785

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
              EM   G +PN+   T+LI+ + +A   +  +     +  +GI PD     CLL
Sbjct: 786 TIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLL 841



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 157/374 (41%), Gaps = 10/374 (2%)

Query: 93  KSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALAL 152
           K+Y    N  VKL    ++ +  ED V   ++   D  L  + +     M N D A   +
Sbjct: 520 KTYSMMINGFVKLKDWANAFAVFEDMVKEGMKP--DVILYNNIISAFCGMGNMDRAIQTV 577

Query: 153 TYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARM 212
                KL+       +   +  + K  D+ ++  +FD M   G  P   TF+ LI+    
Sbjct: 578 KEM-QKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVE 636

Query: 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
                KAVE  + M   G   +  TY+ ++  Y   G+   AF  + R +NE   +D   
Sbjct: 637 KRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFT 696

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           +  L+K    +G     L V +EM A  +  N   YN L+D   R    W+   + ++M 
Sbjct: 697 YEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK 756

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             G+ P+ +TY S + A  +A           EM+  G++ ++  Y TL+   A     +
Sbjct: 757 KEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPE 816

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA------EAMFNEMLEAGFEPNL 446
           +A   +E+MK+    +PD   +  ++T    R  ++EA        +  EM+EAG   ++
Sbjct: 817 KALSCYEEMKAM-GIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDM 875

Query: 447 FVLTSLIQCYGKAQ 460
                  +C  K +
Sbjct: 876 GTAVHWSKCLCKIE 889



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 153/350 (43%), Gaps = 12/350 (3%)

Query: 143 TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVT 202
           TN D     ++ F    K S+    + + +K + +  D+ +A   F+ M  RG+ P +  
Sbjct: 289 TNGDNWQAVISAFEKISKPSR--TEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRI 346

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           +++LI    +    ++A+    +M   G +   +TYS ++  + +AG+ E A   +D A+
Sbjct: 347 YTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAK 406

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
                ++ + +  +I  +    N +    +  EM+  G+   +  Y+ ++D         
Sbjct: 407 RIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEK 466

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +   ++K + + G +P   TY  L+  Y +       L V R MKE+G++ ++  Y+ ++
Sbjct: 467 KGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMI 526

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
                +     AF +FEDM   E  +PD   ++++I+     G +  A     EM +   
Sbjct: 527 NGFVKLKDWANAFAVFEDM-VKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRH 585

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            P       +I  Y K   + D+ R+L     +      R CGC+  V T
Sbjct: 586 RPTTRTFMPIIHGYAK---SGDMRRSLEVFDMM------RRCGCVPTVHT 626



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/404 (20%), Positives = 164/404 (40%), Gaps = 41/404 (10%)

Query: 117 DDVFSVLRCLGDDFLEQDCV---IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMK 173
           D+  S +R + ++ +E   V   +I+   +    A  A  +F    +  K +        
Sbjct: 361 DEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKI 420

Query: 174 VFRKCR--DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
           ++  C+  ++++AE L  +M + G+      + T++    M     K +  F+R+   G 
Sbjct: 421 IYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGF 480

Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
            P  +TY  +I+ Y + G +  A  +    + E  + +   +S +I  +    ++     
Sbjct: 481 TPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFA 540

Query: 292 VYEEMKAIGVKPNMITYNNLLDT---MGRAKRPWQ-VKT--------------------- 326
           V+E+M   G+KP++I YNN++     MG   R  Q VK                      
Sbjct: 541 VFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYA 600

Query: 327 ----------IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
                     ++  M   G  P  +T+  L+      R  E  + +  EM   G+  +  
Sbjct: 601 KSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEH 660

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            Y  ++   A VG T +AFE F  ++ +E    D +T+ +++  C   G++  A A+  E
Sbjct: 661 TYTKIMQGYASVGDTGKAFEYFTRLQ-NEGLDVDIFTYEALLKACCKSGRMQSALAVTKE 719

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           M       N FV   LI  + +     +    + ++ + G+ PD
Sbjct: 720 MSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPD 763


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 133/272 (48%), Gaps = 11/272 (4%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  M  + K   + KA  L+ +ML  G+ P+ VTF  LI      +    A ++   M 
Sbjct: 266 YNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMA 325

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG--- 284
           SFG  P+   Y+ +ID Y +AGN+  A  L+     EK  I P+ F+  I + G  G   
Sbjct: 326 SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEI--EKHEILPDVFTYSILIKGLCGVDR 383

Query: 285 --NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
               DG L   +EMK  G  PN +TYN L+D   +     +   +  +MT+ G+ PN  T
Sbjct: 384 MEEADGLL---QEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIIT 440

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           +++L+  Y +A   E  + +Y EM  KG+   V  Y  L+      G T EAF + ++M+
Sbjct: 441 FSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQ 500

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
            +    P+ +T S +I      G++S+A  +F
Sbjct: 501 EA-GLHPNVFTLSCLIDGLCKDGRISDAIKLF 531



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 153/329 (46%), Gaps = 1/329 (0%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           AS  V+ Y   +    +  D  KA RLFD+M+++ + P  V ++ LI      +  ++A 
Sbjct: 189 ASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAE 248

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
             F  M + G  P+  TY++M+D Y +  +V+ A  LY     +    +   F  LI   
Sbjct: 249 SMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGL 308

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
                         +M + GV PN+  YN L+D   +A    +  +++ E+  + + P+ 
Sbjct: 309 CKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDV 368

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY+ L++        E+   + +EMK+KG   +   YNTL+      G  ++A E+   
Sbjct: 369 FTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQ 428

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M + +  +P+  TFS++I      GK+  A  ++ EM+  G  P++   T+LI  + K  
Sbjct: 429 M-TEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDG 487

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLN 489
            T +  R    + E G+ P+     CL++
Sbjct: 488 NTKEAFRLHKEMQEAGLHPNVFTLSCLID 516



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 144/313 (46%), Gaps = 3/313 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMP 227
           N+ +    K    D   +++ DM+ RG  P+ VT+ TLI  C R  +   KA   F+ M 
Sbjct: 162 NMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFL-KAFRLFDEMI 220

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                P  + Y+ +I        +  A  ++   RN     +   ++T++  Y    +  
Sbjct: 221 EKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVK 280

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L +Y+EM   G+ PN++T+  L+D + +       +    +M   G+ PN   Y  L+
Sbjct: 281 KALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLI 340

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             Y +A    + LS++ E+++  +   V  Y+ L+     V   +EA  + ++MK  +  
Sbjct: 341 DGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMK-KKGF 399

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P++ T++++I      G + +A  + ++M E G EPN+   ++LI  Y KA + +  + 
Sbjct: 400 LPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMG 459

Query: 468 ALNRLPELGITPD 480
               +   G+ PD
Sbjct: 460 LYTEMVIKGLLPD 472



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 145/343 (42%), Gaps = 19/343 (5%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL+L     K +   +V  Y++ +K       +++A+ L  +M  +G  P+ VT++TLI 
Sbjct: 352 ALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLID 411

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    KA+E   +M   G +P+ +T+S++ID Y +AG +E A GLY     +    
Sbjct: 412 GYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLP 471

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D  A++ LI  +   GN      +++EM+  G+ PN+ T + L+D + +  R      ++
Sbjct: 472 DVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531

Query: 329 --KEMTD------NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK------EKGMQLS 374
             K  TD      N L  +     SL  +  R    E  + V R  K      +    L 
Sbjct: 532 LAKTGTDTTGSKTNELDRSLYQMCSLALSLFRG-ISEPCICVIRVTKLFATNNQPKAHLH 590

Query: 375 VTL----YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
             L     N  L        T +    F  +        DS++    +  C+ +  + E 
Sbjct: 591 THLKPPKSNQTLKRYLQSSNTSKVLLFFRILLRKNPSSIDSFSLMFALKACTLKSSLVEG 650

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           + M   ++  GFEP +F+ TSLI  Y       D     + +P
Sbjct: 651 KQMHALVINFGFEPIIFLQTSLISMYSATGNVADAHNMFDEIP 693



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 111/248 (44%), Gaps = 12/248 (4%)

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA--GNFDGCLNVYE 294
            +  +I A+   G VE A  +Y      K  + P   +  + L G    G FD    VY 
Sbjct: 128 VFGVLIIAFSEMGLVEEALWVY-----YKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYG 182

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRA 353
           +M A G  PN++TY  L+D   R     +   ++ EM +  + P    Y  L+R   G +
Sbjct: 183 DMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGES 242

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
           R  E   S++R M+  GM  ++  YNT++     + +  +A E++++M   +   P+  T
Sbjct: 243 RISEAE-SMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEML-GDGLLPNVVT 300

Query: 414 FSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           F  +I  +C     VS A     +M   G  PN+FV   LI  Y KA    + +   + +
Sbjct: 301 FGILIDGLCKTDEMVS-ARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEI 359

Query: 473 PELGITPD 480
            +  I PD
Sbjct: 360 EKHEILPD 367



 Score = 46.6 bits (109), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 61/339 (17%), Positives = 141/339 (41%), Gaps = 26/339 (7%)

Query: 70  TGSSPKSYIWVNPKSPRASK-LKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGD 128
           T + PK+++  + K P++++ LK     +  + ++     L   + +  D FS++     
Sbjct: 581 TNNQPKAHLHTHLKPPKSNQTLKRYLQSSNTSKVLLFFRILLRKNPSSIDSFSLM----- 635

Query: 129 DFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLF 188
            F  + C +  + +      AL + +    +     + L    + ++    ++  A  +F
Sbjct: 636 -FALKACTLKSSLVEGKQMHALVINFGFEPI-----IFLQTSLISMYSATGNVADAHNMF 689

Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
           D++  + +    ++++++IS    N  PNKA++ F +M      PD +T +  + A    
Sbjct: 690 DEIPSKNL----ISWTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVALSACADL 745

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           G ++M   ++   R+     D    ++LI +Y   G       +    +   V PN +T+
Sbjct: 746 GALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCG------EIGTARRFSLVLPNDVTF 799

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMT-DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
             +L     A    + K  ++ M  D  L P  + +  ++    RA    +    Y  + 
Sbjct: 800 MGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTEA---YEFIL 856

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  ++ +  ++ TLL  C+  G  D+   +   +K   +
Sbjct: 857 KMPVRPNAVVWRTLLGACSLQGMWDKKMLVRNQIKQRRD 895


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 123/245 (50%), Gaps = 1/245 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I YNV +  F K   LD A   FD ML  G++PD +T++TL+ C       ++A E FE 
Sbjct: 447 IFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEE 506

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P   T++ MI+++G     +    L    R++    +   ++TLI +YG +G 
Sbjct: 507 MMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGR 566

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           FD  +   ++MKA G+KP+   YN LL+   +     Q  + +  M D+GL P+     S
Sbjct: 567 FDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLALNS 626

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ A+G+ R   +   V + MKE  ++  V  Y TL+     V   D+   ++E+M  S 
Sbjct: 627 LINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKALILVEKFDKVPSVYEEMILS- 685

Query: 406 NCQPD 410
            C PD
Sbjct: 686 GCTPD 690



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 149/330 (45%), Gaps = 4/330 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +  +      + A  +  +M    V+P+   FS +++  R      K  +    M 
Sbjct: 379 YSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREME 438

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y+ +ID +G+   ++ A   +DR  +E    D   ++TL+  +  AG  D
Sbjct: 439 DSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHD 498

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++EEM   G  P   T+N ++++ G  +R   VK +   M   GL PN  TY +L+
Sbjct: 499 RAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLI 558

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YG++   +D +    +MK  G++ S T+YN LL   A  G +D+A   F  M+  +  
Sbjct: 559 DIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMR-DDGL 617

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P     +S+I       +  EA  +   M E   +P++   T+L++     ++ D V  
Sbjct: 618 KPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKALILVEKFDKVPS 677

Query: 468 ALNRLPELGITPDDRFCGCL---LNVMTQT 494
               +   G TPD +    L   L  M QT
Sbjct: 678 VYEEMILSGCTPDRKARAMLRSALKYMKQT 707



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 160/378 (42%), Gaps = 42/378 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN---------- 217
           YN  +    +  D++KA  L   M + G   D V +S +I     NN  N          
Sbjct: 202 YNALISACARNNDIEKALNLICRMREDGYPSDLVNYSLIIRSLMKNNRANSSILQKIYRE 261

Query: 218 ---------------------------KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
                                      KA+E+   +   G      T  ++I   G  G 
Sbjct: 262 IDRDKLEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWGLGNCGR 321

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
            E A  +++  R+   +    A++ L++ Y  AG       V  EM+  GV PN  TY+ 
Sbjct: 322 TEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSL 381

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L+D  G A+R    + + KEM  + + PN   ++ +L +Y      + T  V REM++ G
Sbjct: 382 LIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSG 441

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSE 429
           ++     YN L+         D A   F+ M  SE  +PD+ T+++++  C C+ GK   
Sbjct: 442 VRPDRIFYNVLIDTFGKFNCLDHAMATFDRML-SEGIEPDTITWNTLVD-CHCKAGKHDR 499

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           AE +F EM+E G+ P       +I  +G  +R DDV   L  +   G+ P+      L++
Sbjct: 500 AEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLID 559

Query: 490 VMTQTPKEELGKLVECVE 507
           +  ++ +      +EC++
Sbjct: 560 IYGKSGR--FDDAIECLD 575



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 157/342 (45%), Gaps = 17/342 (4%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI----SCARMNNL 215
           K   +V L+N  +  F K  DLDKA      +   G+     T  T+I    +C R    
Sbjct: 266 KLEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWGLGNCGRT--- 322

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AF 273
             +A   FE M   G  P    Y++++  Y +AG +  A   +  +  E+  + PN   +
Sbjct: 323 -EEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDA--EFVVSEMERSGVLPNEQTY 379

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT--IYKEM 331
           S LI  YG A  ++    V +EM+A  V+PN   ++ +L +  R K  WQ KT  + +EM
Sbjct: 380 SLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASY-RDKGEWQ-KTFQVLREM 437

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
            D+G+ P+   Y  L+  +G+    +  ++ +  M  +G++     +NTL+      G  
Sbjct: 438 EDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKH 497

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           D A E+FE+M   +   P + TF+ MI     + +  + + +   M   G  PN    T+
Sbjct: 498 DRAEELFEEMM-EKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTT 556

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           LI  YGK+ R DD +  L+ +   G+ P       LLN   Q
Sbjct: 557 LIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQ 598



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 158/354 (44%), Gaps = 19/354 (5%)

Query: 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
           C   ++AE +F++M D G++P    ++ L+       L   A      M   G  P+  T
Sbjct: 319 CGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQT 378

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEE 295
           YS +IDAYG A   E A  +      E   + PNA  FS ++  Y   G +     V  E
Sbjct: 379 YSLLIDAYGNAERWESARIVLKEM--EASNVQPNAYVFSRILASYRDKGEWQKTFQVLRE 436

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M+  GV+P+ I YN L+DT G+          +  M   G+ P+  T+ +L+  + +A  
Sbjct: 437 MEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGK 496

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            +    ++ EM EKG     T +N ++    D    D+   +  +M+S +   P++ T++
Sbjct: 497 HDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRS-QGLLPNAVTYT 555

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           ++I I    G+  +A    ++M  AG +P+  +  +L+  Y +   +D  V A   + + 
Sbjct: 556 TLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDD 615

Query: 476 GITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 529
           G+ P       L+N          GK    VE       +VV   ++E D++ D
Sbjct: 616 GLKPSLLALNSLINA--------FGKDRRDVE------AFVVLQYMKENDLKPD 655



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 121/256 (47%), Gaps = 5/256 (1%)

Query: 120 FSVLRCLGDDFLEQDCV---IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKV 174
           F VLR + D  +  D +   ++++     +    A+  F   L    E   I +N  +  
Sbjct: 431 FQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDC 490

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
             K    D+AE LF++M+++G  P N TF+ +I+        +        M S G  P+
Sbjct: 491 HCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPN 550

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
           A+TY+++ID YG++G  + A    D  +    +     ++ L+  Y   G  D  ++ + 
Sbjct: 551 AVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFW 610

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
            M+  G+KP+++  N+L++  G+ +R  +   + + M +N L P+  TY +L++A     
Sbjct: 611 AMRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKALILVE 670

Query: 355 YGEDTLSVYREMKEKG 370
             +   SVY EM   G
Sbjct: 671 KFDKVPSVYEEMILSG 686


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 166/364 (45%), Gaps = 23/364 (6%)

Query: 112 CSATE-DDVFSVLR-CLGDDFLEQDCVI--ILNNMTNPDTAALALTYFTNKLKAS--KEV 165
           CSA + +  FSV+R  +G  F+        +LN + N     LA   F    +     +V
Sbjct: 418 CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADV 477

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
             Y + +  F K   +++A + F++M + G  P+ VT++ LI         + A E FE 
Sbjct: 478 YTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 537

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID--------------PN 271
           M S GC P+ +TYS++ID + +AG VE A  +++R    K   D              PN
Sbjct: 538 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPN 597

Query: 272 A--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
              +  L+  +  +   +    + + M   G +PN I Y+ L+D + +  +  + + +  
Sbjct: 598 VVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKT 657

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           EM+++G      TY+SL+  Y + +  +    V  +M E     +V +Y  ++     VG
Sbjct: 658 EMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 717

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
            TDEA+++ + M   + CQP+  T+++MI      GK+     +   M   G  PN    
Sbjct: 718 KTDEAYKLMQ-MMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 776

Query: 450 TSLI 453
             LI
Sbjct: 777 RVLI 780



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 157/373 (42%), Gaps = 47/373 (12%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           LD AE+ + +ML  GV  + +  S+   C        KA      M   G  PD  TYS 
Sbjct: 388 LDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSK 447

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +++    A  +E+AF L++  +      D   ++ ++  +  AG  +     + EM+ +G
Sbjct: 448 VLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVG 507

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
             PN++TY  L+    +AK+      +++ M   G  PN  TY++L+  + +A   E   
Sbjct: 508 CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKAC 567

Query: 361 SVYREM----------------KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            ++  M                 +   + +V  Y  LL         +EA ++ + M S 
Sbjct: 568 QIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAM-SM 626

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           E C+P+   + ++I      GK+ EA+ +  EM E GF   L+  +SLI  Y K +R D 
Sbjct: 627 EGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDL 686

Query: 465 VVRALNRLPELGITPD--------DRFC------------------GCLLNVMTQTPKEE 498
             + L+++ E    P+        D  C                  GC  NV+T T   +
Sbjct: 687 ASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 746

Query: 499 ----LGKLVECVE 507
               +GK+  C+E
Sbjct: 747 GFGMIGKIETCLE 759



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 124/290 (42%), Gaps = 3/290 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y+  +    K   LD+A+ +  +M + G      T+S+LI         + A +   +
Sbjct: 634 IVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSK 693

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M    C P+ + Y+ MID   + G  + A+ L      +  + +   ++ +I  +G  G 
Sbjct: 694 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGK 753

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            + CL + E M + GV PN +TY  L+D   +         + +EM       +   Y  
Sbjct: 754 IETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRK 813

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++  + +     ++L +  E+ +      +++Y  L+         + A  + E++ +  
Sbjct: 814 VIEGFNKEFI--ESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFS 871

Query: 406 NCQPD-SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
               D S T++S+I       KV  A  +F+EM + G  P +    SLI+
Sbjct: 872 ATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIK 921



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 39/225 (17%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V++Y   +    K    D+A +L   M ++G +P+ VT++ +I    M       +E  E
Sbjct: 703 VVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLE 762

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           RM S G  P+ +TY  +ID   + G +++A  L +  +   W      +  +I+  G   
Sbjct: 763 RMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIE--GFNK 820

Query: 285 NFDGCLNVYEEMKAIGVKP----------NMI---------------------------T 307
            F   L + +E+      P          N+I                           T
Sbjct: 821 EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSST 880

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           YN+L++++  A +      ++ EMT  G+ P   ++ SL++   R
Sbjct: 881 YNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFR 925



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 85/446 (19%), Positives = 159/446 (35%), Gaps = 87/446 (19%)

Query: 117 DDVFS-----VLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVT 171
           DDVF       LR   +   E   + +L  +  P        +   ++       +YN  
Sbjct: 71  DDVFGRKSQKFLRQFREKLSESLVIEVLRLIARPSAVISFFVWAGRQIGYKHTAPVYNAL 130

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK----AVEWFERMP 227
           + +  +    D  E++ ++ L +    D   F   ++     +  N     A+E   R+ 
Sbjct: 131 VDLIVR----DDDEKVPEEFLQQIRDDDKEVFGQFLNVLVRKHCRNGSFSIALEELGRLK 186

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMA----------------FGL----YDRARNEKWR 267
            F   P   TY+ +I A+ +A  ++ A                F L    Y   +  KWR
Sbjct: 187 DFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWR 246

Query: 268 ------------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
                        D   ++ LI     A  F+  ++    M+A    PN++TY+ LL   
Sbjct: 247 EALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC 306

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
              K+  + K +   M   G  P+   + SL+ AY  +        + ++M + G     
Sbjct: 307 LNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGY 366

Query: 376 TLYNTLL-AMCAD----------------------------------------VGYTDEA 394
            +YN L+ ++C D                                         G  ++A
Sbjct: 367 VVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKA 426

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           F +  +M   +   PD+ T+S ++       K+  A  +F EM   G   +++  T ++ 
Sbjct: 427 FSVIREM-IGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVD 485

Query: 455 CYGKAQRTDDVVRALNRLPELGITPD 480
            + KA   +   +  N + E+G TP+
Sbjct: 486 SFCKAGLIEQARKWFNEMREVGCTPN 511


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 152/311 (48%), Gaps = 4/311 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V++Y+  +  +     +++A RL D M   GV PD   ++ +ISC        +A  +  
Sbjct: 185 VVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLL 244

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G  PDA+T+ + I  Y + G +  A   +D   +     +   ++ LI  +  AG
Sbjct: 245 EIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAG 304

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N    L+++  + A+GV P++ T +  +  + +  R  +   ++ E+ + GL P+  TY+
Sbjct: 305 NLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYS 364

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL+  + +    E    ++ EM  KG+  ++ +YN L+      G    A ++F+ M   
Sbjct: 365 SLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGM-PE 423

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +  +PDS T+S+MI        V+EA ++F+EM   G +P+ FV  +L+       +  D
Sbjct: 424 KGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVH---GCCKEGD 480

Query: 465 VVRALNRLPEL 475
           + +A+N   E+
Sbjct: 481 MEKAMNLFREM 491



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 110/457 (24%), Positives = 190/457 (41%), Gaps = 73/457 (15%)

Query: 68  GKTGSSPKSYIW--VNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSAT------EDDV 119
           G+ G  P +Y +  +     RA ++ E            L  D ++CSA       E D+
Sbjct: 2   GEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDI 61

Query: 120 FSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR 179
             VLR + D  +   C I +N                        +I YNV +    K  
Sbjct: 62  DEVLR-IKDVMV--SCGIPIN------------------------LITYNVLIHGLCKFG 94

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTY 238
            ++KA  +   M+  G KP++ TF  LI    R +N+  +A+E  + M      P A++Y
Sbjct: 95  KMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNM-GRALELLDEMEKRNLVPSAVSY 153

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
            +MI+      ++ +A  L ++      + +   +STLI  Y + G  +    + + M  
Sbjct: 154 GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSC 213

Query: 299 IGVKPNMITYNN-----------------LLDTMGRAKRPWQV----------KT----- 326
            GV P++  YN                  LL+  GR  +P  V          KT     
Sbjct: 214 SGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTE 273

Query: 327 ---IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
               + EM D+GL PN   Y  L+  + +A    + LS++R +   G+   V   +  + 
Sbjct: 274 AAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIH 333

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
                G   EA ++F ++K  +   PD +T+SS+I+    +G+V +A  + +EM   G  
Sbjct: 334 GLLKNGRVQEALKVFSELK-EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIA 392

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           PN+F+  +L+    K+       +  + +PE G+ PD
Sbjct: 393 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPD 429



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 141/312 (45%), Gaps = 1/312 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +     C+DL  A +L + M   G+KP+ V +STLI          +A    + M 
Sbjct: 153 YGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMS 212

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD   Y+++I    +AG +E A       +    + D   F   I  Y   G   
Sbjct: 213 CSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMT 272

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
                ++EM   G+ PN   Y  L++   +A    +  +I++ +   G+ P+  T ++ +
Sbjct: 273 EAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFI 332

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +    ++ L V+ E+KEKG+   V  Y++L++     G  ++AFE+ ++M   +  
Sbjct: 333 HGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEM-CLKGI 391

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+ + +++++      G +  A  +F+ M E G EP+    +++I  Y K++   +   
Sbjct: 392 APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFS 451

Query: 468 ALNRLPELGITP 479
             + +P  G+ P
Sbjct: 452 LFHEMPSKGVQP 463



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 177/383 (46%), Gaps = 25/383 (6%)

Query: 119 VFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVF 175
           +F  L  LG     Q C   ++ +        AL  F+ +LK      +V  Y+  +  F
Sbjct: 312 IFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFS-ELKEKGLVPDVFTYSSLISGF 370

Query: 176 RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
            K  +++KA  L D+M  +G+ P+   ++ L+     +    +A + F+ MP  G +PD+
Sbjct: 371 CKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS 430

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           +TYS+MID Y ++ NV  AF L+    ++  +     ++ L+      G+ +  +N++ E
Sbjct: 431 VTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFRE 490

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M   G    + ++N L+D   ++ +  +   +++EM    + P+  TY +++  + +A  
Sbjct: 491 MLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGK 549

Query: 356 GEDTLSVYREMKEKGMQL------------------SVTLYNTLLAMCADVGYTDEAFEI 397
            E+   +++EM+E+ + +                   VT    + A C +     EAF++
Sbjct: 550 MEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLV-EAFKL 608

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
             D    +           +IT    R  ++EA  + +EM E G +P+L   ++L++ + 
Sbjct: 609 -RDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFH 667

Query: 458 KAQRTDDVVRALNRLPELGITPD 480
           +A + D+  R    +  LG+ PD
Sbjct: 668 EAGKMDEATRVFEGVKSLGLVPD 690



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 145/322 (45%), Gaps = 1/322 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y +      + + +++A+  F++M   G+KPD    S LI         ++ +   + M 
Sbjct: 13  YTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMV 72

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S G   + +TY+ +I    + G +E A  +         + +   F  LI+ Y    N  
Sbjct: 73  SCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMG 132

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L + +EM+   + P+ ++Y  +++ +   K       + ++MT +GL PN   Y++L+
Sbjct: 133 RALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLI 192

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             Y      E+   +   M   G+   +  YN +++  +  G  +EA     +++     
Sbjct: 193 MGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQ-GRGL 251

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD+ TF + I   S  GK++EA   F+EML+ G  PN  + T LI  + KA    + + 
Sbjct: 252 KPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALS 311

Query: 468 ALNRLPELGITPDDRFCGCLLN 489
               L  LG+ PD + C   ++
Sbjct: 312 IFRHLHALGVLPDVQTCSAFIH 333



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 122/274 (44%), Gaps = 7/274 (2%)

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P+  TY+ +     RA  +  A   ++  +    + D NA S LI  +   G+
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D  L + + M + G+  N+ITYN L+  + +  +  +   I K M   G  PN  T+  
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL---LAMCADVGYTDEAFEIFEDMK 402
           L+  Y R       L +  EM+++ +  S   Y  +   L  C D+   +   ++ E M 
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN---KLLEKMT 177

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            S   +P+   +S++I   +  G++ EA  + + M  +G  P++F   ++I C  KA + 
Sbjct: 178 FS-GLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKM 236

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           ++    L  +   G+ PD    G  +   ++T K
Sbjct: 237 EEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGK 270



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 86/199 (43%), Gaps = 17/199 (8%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI----SCARM----------- 212
           +N  +  + K   + +A +LF +M+ + + PD+VT++T+I       +M           
Sbjct: 502 FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQ 561

Query: 213 --NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP 270
             N + +     FE+M + G  PD +TY  +I A+ +  N+  AF L D    +      
Sbjct: 562 ERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKG 621

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
                LI       +      + +EM  +G+KP++   + L+ +   A +  +   +++ 
Sbjct: 622 TIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEG 681

Query: 331 MTDNGLSPNWNTYASLLRA 349
           +   GL P+  T   L+  
Sbjct: 682 VKSLGLVPDTTTLIDLVNG 700


>gi|225452658|ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic [Vitis vinifera]
 gi|296087770|emb|CBI35026.3| unnamed protein product [Vitis vinifera]
          Length = 675

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 160/356 (44%), Gaps = 36/356 (10%)

Query: 152 LTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
           L +   +   S  V  YNV ++   + +  + A  LF++M  R + PD  T+STLI+   
Sbjct: 142 LDWINEEASYSPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYSTLITHFG 201

Query: 212 MNNLPNKAVEW-----------------------------------FERMPSFGCDPDAL 236
              + + A+ W                                   F R+   G  PD +
Sbjct: 202 KEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGISPDLV 261

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            Y+SMI+ +G+A     A  L    R      D  ++STL+ +Y   G +   L+V+ EM
Sbjct: 262 AYNSMINVFGKAKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVEALSVFSEM 321

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
             +    ++ T N ++D  G+     +   ++  M   G+ P   +Y +LLR YG A   
Sbjct: 322 NEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYNTLLRVYGEAELF 381

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            + + ++R M+ K ++ +V  YNT++ +       ++A  + ++M+ +   +P++ T+S+
Sbjct: 382 GEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQ-NRGIEPNAITYST 440

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           +I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R L+ L
Sbjct: 441 IISIWDKAGKLDRAAMLFQKLRSSGIEIDQVLYQTMIVAYERAGLVAHAKRLLHEL 496



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 166/360 (46%), Gaps = 30/360 (8%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           + S +++LY+  +++ RK  D  KA  +F  +   G+ PD V ++++I+      L  +A
Sbjct: 220 RVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGISPDLVAYNSMINVFGKAKLFREA 279

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
                 M + G  PD ++YS+++  Y   G    A  ++      +  +D    + +I +
Sbjct: 280 RLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVEALSVFSEMNEVRCPLDLTTCNVMIDV 339

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           YG          ++  M+ +G++P +++YN LL   G A+   +   +++ M    +  N
Sbjct: 340 YGQLDMAKEADRLFWSMRKMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQN 399

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY ++++ YG++   E   ++ +EM+ +G++ +   Y+T++++    G  D A  +F+
Sbjct: 400 VVTYNTMIKIYGKSLEHEKATNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQ 459

Query: 400 DMKSS------------------------------ENCQPDSWTFSSMITICSCRGKVSE 429
            ++SS                              E  +PD+    + ITI +  G++ E
Sbjct: 460 KLRSSGIEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRETAITILAGAGRIEE 519

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           A  +F +  +AG   ++ V   +I  + + ++  +V+   +++   G  PD      +LN
Sbjct: 520 ATWVFRQAFDAGEVKDITVFGCMIDLFSRNRKHTNVIEVFDKMRGAGYFPDSNVIALVLN 579



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 137/294 (46%), Gaps = 5/294 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  +K++ K  + +KA  L  +M +RG++P+ +T+ST+IS
Sbjct: 384 AIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQNRGIEPNAITYSTIIS 443

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G + D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 444 IWDKAGKLDRAAMLFQKLRSSGIEIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 499

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D     T I +   AG  +    V+ +    G   ++  +  ++D   R ++   V  ++
Sbjct: 500 DNIPRETAITILAGAGRIEEATWVFRQAFDAGEVKDITVFGCMIDLFSRNRKHTNVIEVF 559

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            +M   G  P+ N  A +L A G+ R  E   ++Y+EM+E+G   S  ++  +L++    
Sbjct: 560 DKMRGAGYFPDSNVIALVLNACGKLREFEKADAIYKEMEEEGCVFSDEVHFQMLSLYGAR 619

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
           G       +FE + S  N          + +I     ++++A  + N M E G 
Sbjct: 620 GDFQMVDSLFERLDSDPNINKKELHL-VVASIYERANRLNDASQIMNRMRERGI 672



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 157/332 (47%), Gaps = 14/332 (4%)

Query: 151 ALTYFT--NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL+ F+  N+++   ++   NV + V+ +     +A+RLF  M   G++P  V+++TL+ 
Sbjct: 314 ALSVFSEMNEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYNTLLR 373

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 L  +A+  F  M     + + +TY++MI  YG++   E A  L    +N    I
Sbjct: 374 VYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQNRG--I 431

Query: 269 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           +PNA  +ST+I ++  AG  D    +++++++ G++ + + Y  ++    RA      K 
Sbjct: 432 EPNAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEIDQVLYQTMIVAYERAGLVAHAKR 491

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +  E+      P   T  ++L   GR    E+   V+R+  + G    +T++  ++ + +
Sbjct: 492 LLHELKRPDNIPR-ETAITILAGAGRI---EEATWVFRQAFDAGEVKDITVFGCMIDLFS 547

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG--FEP 444
                    E+F+ M+ +    PDS   + ++  C    +  +A+A++ EM E G  F  
Sbjct: 548 RNRKHTNVIEVFDKMRGA-GYFPDSNVIALVLNACGKLREFEKADAIYKEMEEEGCVFSD 606

Query: 445 NL-FVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
            + F + SL    G  Q  D +   L+  P +
Sbjct: 607 EVHFQMLSLYGARGDFQMVDSLFERLDSDPNI 638



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 5/201 (2%)

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           SV  YN ++         + A  +FE+M+      PD +T+S++IT     G    A + 
Sbjct: 154 SVFAYNVVIRNVLRAKQWELAHGLFEEMRQ-RALAPDRYTYSTLITHFGKEGMFDSALSW 212

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
             +M +     +L + ++LI+   K       +   +RL   GI+PD      ++NV  +
Sbjct: 213 LQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGISPDLVAYNSMINVFGK 272

Query: 494 TPKEELGKLVECVEKSNSKLGYVVKL-LLEEQDIEGDFKKEATELF---NSISKDVKKAY 549
                  +L+    ++   +   V    L    +E     EA  +F   N +   +    
Sbjct: 273 AKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVEALSVFSEMNEVRCPLDLTT 332

Query: 550 CNCLIDLCVNLNLLENACKLL 570
           CN +ID+   L++ + A +L 
Sbjct: 333 CNVMIDVYGQLDMAKEADRLF 353


>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Cucumis sativus]
          Length = 576

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 154/331 (46%), Gaps = 3/331 (0%)

Query: 128 DDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERL 187
           DD +     + LN    P    L   +  NK     +VI+YN+ M  + +       E  
Sbjct: 120 DDIISVAVQLRLNKKWGP--IILICEWIMNKSTFRPDVIVYNLLMDAYGQRSLYKDVEST 177

Query: 188 FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
           + ++L+    P   T++ L+     + L  KA   F  M  +G  P A+ Y++ ID   +
Sbjct: 178 YLELLESHCIPTEDTYALLLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVK 237

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
            GN   A  ++ R + +  +   + ++ LI +YG         N+++EM+    KPN+ T
Sbjct: 238 GGNNVKAVEIFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICT 297

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           +  L++ + R     + + I+++M + G  P+   Y +L+ +Y RA +      ++  M+
Sbjct: 298 FTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQ 357

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
             G +     YN ++      G  ++A  +FE+MK      P   +   +++  S  G V
Sbjct: 358 HMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRI-GITPTMKSHMLLLSAYSSAGNV 416

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           ++ E +  +M ++G +P+ FV+ S++  YG+
Sbjct: 417 AKCEDIIGQMHKSGLKPDTFVMNSMLNLYGR 447



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 155/310 (50%), Gaps = 10/310 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + + V+ K      A+ +FD+M  +  KP+  TF+ L++      L  KA E FE+M 
Sbjct: 263 YTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQ 322

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G +PD   Y++++++Y RAG    A  ++   ++     D  +++ ++  YG AG  +
Sbjct: 323 EAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHE 382

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V+EEMK IG+ P M ++  LL     A    + + I  +M  +GL P+     S+L
Sbjct: 383 DAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSML 442

Query: 348 RAYGR-ARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
             YGR  ++G  ED  S    M++   +  ++ YN L+ +    G+ +   E+F+ +  +
Sbjct: 443 NLYGRLGQFGKMEDLFST---MQKGPCRADISTYNILINVYGRAGFVERMEELFQ-LLPA 498

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN---LFVLTSLIQCYGKAQR 461
           +N +PD  T++S I   S +        +F +M++AG  P+     VL S      + ++
Sbjct: 499 KNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQ 558

Query: 462 TDDVVRALNR 471
             +VVR +++
Sbjct: 559 VTNVVRTMHK 568



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 161/377 (42%), Gaps = 37/377 (9%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +K + K   L+KAE +F +M   G+ P  + ++  I          KAVE F RM 
Sbjct: 193 YALLLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMK 252

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK---------------------- 265
             GC P   TY+ +I+ YG+     MA  ++D  R ++                      
Sbjct: 253 RDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCE 312

Query: 266 -------------WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
                        +  D  A++ L++ Y  AG   G   ++  M+ +G +P+  +YN ++
Sbjct: 313 KAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMV 372

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           D  GRA      + +++EM   G++P   ++  LL AY  A        +  +M + G++
Sbjct: 373 DAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLK 432

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
               + N++L +   +G   +  ++F  M+    C+ D  T++ +I +    G V   E 
Sbjct: 433 PDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGP-CRADISTYNILINVYGRAGFVERMEE 491

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           +F  +     EP++   TS I  Y + +     +    ++ + G  PD      LL+  +
Sbjct: 492 LFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVLLSACS 551

Query: 493 QTPK-EELGKLVECVEK 508
              + E++  +V  + K
Sbjct: 552 SEEQIEQVTNVVRTMHK 568


>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
          Length = 374

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 150/333 (45%), Gaps = 25/333 (7%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM-------------- 226
           +D A RL DDM   GV  + + +++L+ C        +  E  E M              
Sbjct: 30  VDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGDGTC 89

Query: 227 ---PSF-------GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
              P         G +P+  TY  +I+ + + G +E A  L    + +   ++   F+T+
Sbjct: 90  GGPPKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTM 149

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           I  Y   G  D  L +   M+ +GV+ ++ TYN L   + R  R  + KT+   M + G+
Sbjct: 150 IDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGV 209

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            PN+ TY +L+  + +     +   ++REM EKG   SV  YN ++   A  G   EA E
Sbjct: 210 VPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREA-E 268

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
            F      +   PD +T++S++      GKV  A  +F EM + G EPN+   T+LI   
Sbjct: 269 RFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGL 328

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
            K  R++   +  + + + G+ PDD     L+ 
Sbjct: 329 AKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVG 361



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 121/253 (47%), Gaps = 5/253 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y V +  F K   ++ AE L  DM  +GV  + + F+T+I       + + A++    M 
Sbjct: 111 YGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAME 170

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGN 285
             G + D  TY+++     R   ++ A  L       +  + PN   ++TLI ++   G+
Sbjct: 171 KMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMI--EMGVVPNYVTYTTLISIHCKDGD 228

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 ++ EM   G  P+++TYN ++    +     + +   KEM   G  P+  TYAS
Sbjct: 229 MVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYAS 288

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  +      +  L ++ EMK++G + +V  Y  L++  A  G ++ AF++++DM  + 
Sbjct: 289 LVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKA- 347

Query: 406 NCQPDSWTFSSMI 418
              PD   +S+++
Sbjct: 348 GLIPDDSLYSALV 360



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 125/278 (44%), Gaps = 1/278 (0%)

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
           ++ D+ +  GV+P+  T+  LI+          A      M   G   + + +++MID Y
Sbjct: 94  KVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGY 153

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
            R G V+ A  +          +D   ++TL          D    +   M  +GV PN 
Sbjct: 154 CRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNY 213

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           +TY  L+    +     + + +++EM + G +P+  TY  ++  Y +     +     +E
Sbjct: 214 VTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKE 273

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M++KG    V  Y +L+      G  D A ++FE+MK     +P+   ++++I+  +  G
Sbjct: 274 MEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMK-QRGTEPNVVAYTALISGLAKEG 332

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +   A  ++++ML+AG  P+  + ++L+       R D
Sbjct: 333 RSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNRKD 370



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 94/199 (47%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL +     K+    ++  YN       +   LD+A+ L   M++ GV P+ VT++TLIS
Sbjct: 162 ALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLIS 221

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               +    +A   F  M   G  P  +TY+ MI  Y + G++  A         + +  
Sbjct: 222 IHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVP 281

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +++L+  +   G  D  L ++EEMK  G +PN++ Y  L+  + +  R      +Y
Sbjct: 282 DVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLY 341

Query: 329 KEMTDNGLSPNWNTYASLL 347
            +M   GL P+ + Y++L+
Sbjct: 342 DDMLKAGLIPDDSLYSALV 360



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 103/238 (43%), Gaps = 29/238 (12%)

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
           + P A S ++     +G  D    + ++M   GV  N + YN+LLD   R K   +V+ I
Sbjct: 12  VSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEI 71

Query: 328 YK------------------------EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
            +                        E   NG+ PN  TY  L+  + +    E    + 
Sbjct: 72  LEIMENEGIEATVGDGTCGGPPKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLL 131

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS- 422
            +M+ +G+ L+  ++NT++      G  D+A +I   M+     + D +T++++   C  
Sbjct: 132 ADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKM-GVELDIYTYNTL--ACGL 188

Query: 423 CR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           CR  ++ EA+ + + M+E G  PN    T+LI  + K     +  R    + E G TP
Sbjct: 189 CRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATP 246


>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
 gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 123/245 (50%), Gaps = 1/245 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YNV +  F K   LD A   FD ML  G++PD VT++TLI C       ++A E FE 
Sbjct: 446 VFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEE 505

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P   T++ MI+++G     +    L    R++    +   ++TLI +YG +G 
Sbjct: 506 MMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGR 565

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F+  +   ++MKA G+KP+   YN L++   +     Q  + ++ M  +GL P+     S
Sbjct: 566 FNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPSLLALNS 625

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ A+G  R   +  +V + MKE  ++  V  Y TL+     V   D+   ++E+M  S 
Sbjct: 626 LINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPSVYEEMILS- 684

Query: 406 NCQPD 410
            C PD
Sbjct: 685 GCTPD 689



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 151/330 (45%), Gaps = 4/330 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  +      + A  +  +M    V+P+   FS ++S  R      K+ +    M 
Sbjct: 378 YSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREME 437

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  PD + Y+ MID +G+   ++ A   +DR  +E    D   ++TLI  +  AG  D
Sbjct: 438 NSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHD 497

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++EEM   G  P   T+N ++++ G  +R   VK +   M   GL PN  TY +L+
Sbjct: 498 RAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLI 557

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YG++    D +    +MK  G++ S T+YN L+   A  G +++A   F  M+  +  
Sbjct: 558 DIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMR-VDGL 616

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P     +S+I       + +EA  +   M E   +P++   T+L++   + ++ D V  
Sbjct: 617 KPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPS 676

Query: 468 ALNRLPELGITPDDRFCGCL---LNVMTQT 494
               +   G TPD +    L   L  M QT
Sbjct: 677 VYEEMILSGCTPDRKARAMLRSALKYMKQT 706



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 143/303 (47%), Gaps = 6/303 (1%)

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           ++  A+  +L +KA+E+   +   G      T  ++I A G  G    A  +++  R+  
Sbjct: 277 IVGFAKAGDL-SKALEFLGVVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNG 335

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
            +    A++ L++ Y  AG       V  EM+  GV PN  TY+ L+D  G A R    +
Sbjct: 336 LKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESAR 395

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + KEM  + + PN   ++ +L +Y      + +  V REM+  G++     YN ++   
Sbjct: 396 IVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTF 455

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEP 444
                 D A   F+ M  SE  +PD+ T++++I  C CR GK   AE +F EM+E G+ P
Sbjct: 456 GKFNCLDHAMATFDRML-SEGIEPDTVTWNTLID-CHCRAGKHDRAEELFEEMMEGGYSP 513

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVE 504
                  +I  +G  +R DDV   L  +   G+ P+      L+++  ++ +      +E
Sbjct: 514 CNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGR--FNDAIE 571

Query: 505 CVE 507
           C++
Sbjct: 572 CLD 574



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 142/279 (50%), Gaps = 1/279 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +++  +  +R   +  K+ ++  +M + GV+PD V ++ +I      N  + A+  F+RM
Sbjct: 412 VFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRM 471

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            S G +PD +T++++ID + RAG  + A  L++      +      F+ +I  +G    +
Sbjct: 472 LSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERW 531

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D   N+   M++ G+ PN +TY  L+D  G++ R         +M   GL P+   Y +L
Sbjct: 532 DDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNAL 591

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + AY +    E  +S +R M+  G++ S+   N+L+    +     EAF + + MK ++ 
Sbjct: 592 INAYAQRGLSEQAVSAFRAMRVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKEND- 650

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            +PD  T+++++       K  +  +++ EM+ +G  P+
Sbjct: 651 LKPDVVTYTTLMKALIRVEKFDKVPSVYEEMILSGCTPD 689



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 145/322 (45%), Gaps = 5/322 (1%)

Query: 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
           C    +AE +F++M D G+KP    ++ L+       L   A      M   G  P+  T
Sbjct: 318 CGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQT 377

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEE 295
           YS +IDAYG AG  E A  +      E   + PNA  FS ++  Y   G +     V  E
Sbjct: 378 YSFLIDAYGNAGRWESARIVLKEM--EASNVQPNAYVFSRILSSYRDKGEWQKSFQVLRE 435

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M+  GV+P+ + YN ++DT G+          +  M   G+ P+  T+ +L+  + RA  
Sbjct: 436 MENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGK 495

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            +    ++ EM E G     T +N ++    D    D+   +   M+S +   P+S T++
Sbjct: 496 HDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRS-QGLVPNSVTYT 554

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           ++I I    G+ ++A    ++M  AG +P+  +  +LI  Y +   ++  V A   +   
Sbjct: 555 TLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVD 614

Query: 476 GITPDDRFCGCLLNVMTQTPKE 497
           G+ P       L+N   +  ++
Sbjct: 615 GLKPSLLALNSLINAFGEDRRD 636



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 147/306 (48%), Gaps = 10/306 (3%)

Query: 181 LDKAERLFDDML---DRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDAL 236
           L ++E+L++  L    + + P  +T++ LIS CAR N+L  KA+    RM   G   D +
Sbjct: 178 LGQSEKLYEAFLLSQRQNLTP--LTYNALISACARNNDL-EKALNLITRMRQDGYPSDFV 234

Query: 237 TYSSMIDAYGRAGNVEMAF--GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
            YS +I +  R   V+ A    LY     +K  +D    + +I  +  AG+    L    
Sbjct: 235 NYSLIIRSLMRKNRVDSAILQKLYREIECDKLELDVQLSNDIIVGFAKAGDLSKALEFLG 294

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
            ++  G+     T   ++  +G   R  + + I++EM DNGL P    Y +LLR Y +A 
Sbjct: 295 VVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAG 354

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             +D   V  EM+  G+  +   Y+ L+    + G  + A  + ++M++S N QP+++ F
Sbjct: 355 LLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEAS-NVQPNAYVF 413

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           S +++    +G+  ++  +  EM  +G  P+      +I  +GK    D  +   +R+  
Sbjct: 414 SRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLS 473

Query: 475 LGITPD 480
            GI PD
Sbjct: 474 EGIEPD 479



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 120/256 (46%), Gaps = 5/256 (1%)

Query: 120 FSVLRCLGDDFLEQDCV---IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKV 174
           F VLR + +  +  D V   ++++     +    A+  F   L    E   + +N  +  
Sbjct: 430 FQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDC 489

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
             +    D+AE LF++M++ G  P N TF+ +I+        +        M S G  P+
Sbjct: 490 HCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPN 549

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
           ++TY+++ID YG++G    A    D  +    +     ++ LI  Y   G  +  ++ + 
Sbjct: 550 SVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFR 609

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
            M+  G+KP+++  N+L++  G  +R  +  T+ + M +N L P+  TY +L++A  R  
Sbjct: 610 AMRVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRVE 669

Query: 355 YGEDTLSVYREMKEKG 370
             +   SVY EM   G
Sbjct: 670 KFDKVPSVYEEMILSG 685


>gi|297839813|ref|XP_002887788.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
 gi|297333629|gb|EFH64047.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
          Length = 832

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 122/535 (22%), Positives = 237/535 (44%), Gaps = 47/535 (8%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  ++   K   L+ A   F    + G K D  T++ L+       LP KA E +E M 
Sbjct: 242 YNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESME 301

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                 D  TY  +I +  ++G ++ AF L+ + +  K R   + FS+L+   G AG  D
Sbjct: 302 KTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLD 361

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + VY EM+  G +P+   + +L+D+  +A +      ++ EM  +G  PN+  Y  ++
Sbjct: 362 TSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMII 421

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            ++ ++   E  +SV+++M++ G   + + Y+ LL M A  G  D A +I+  M ++   
Sbjct: 422 ESHAKSGKLEVAMSVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSM-TNAGL 480

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P   ++ S++T+ + +  V  A  +  EM   G+  ++   + ++  Y K    D  ++
Sbjct: 481 RPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDV-CASDVLMIYIKDASVDLALK 539

Query: 468 ALNRLPELGITPDD-----RFCGCLLNVMTQTPKEELGKLVECVEKSN-----SKLGYVV 517
            L  +   GI  ++      F  C+ N +  + +  L  LV    K +     S L ++V
Sbjct: 540 WLRFMGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKVDLVLYTSILAHLV 599

Query: 518 KLLLEEQDIE-----------------GDF-----KKEAT-----ELFNSISKDVKKA-- 548
           +   E+++ +                 G F     +K+       E +  I  ++++   
Sbjct: 600 RCQDEDKERQLMSILSATKHKAHAFMCGLFTGPEQRKQPVLTFVREFYQGIDYELEEGAA 659

Query: 549 --YCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTA 605
             + N L++  V +  +  A  + ++    +++   I       WSL +++LS+GAAL A
Sbjct: 660 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIA 719

Query: 606 LHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASV---FESHLKELNAP 657
           +   ++   K +      P  + + TG        + L+SV   FE     L AP
Sbjct: 720 VVHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQVLSSVESPFEVSKVVLRAP 774



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 108/220 (49%), Gaps = 1/220 (0%)

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
            A++ +I+    A   +     +++ +  G K +  TYNNL+        P++   IY+ 
Sbjct: 240 GAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYES 299

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           M       + +TY  ++ +  ++   +    ++++MKE+ ++ S +++++L+      G 
Sbjct: 300 MEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGR 359

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
            D + +++ +M+   + +P +  F S+I   +  GK+  A  +++EM ++GF PN  + T
Sbjct: 360 LDTSMKVYMEMQGFGH-RPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYT 418

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
            +I+ + K+ + +  +     + + G  P      CLL +
Sbjct: 419 MIIESHAKSGKLEVAMSVFKDMEKAGFLPTPSTYSCLLEM 458



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 125/273 (45%), Gaps = 16/273 (5%)

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP---NWNTYASLLRAYGRARYGEDTLSVYR 364
           Y  L D + + +    ++++++EM  +  S    ++  Y  +++   +A   E     ++
Sbjct: 204 YVVLFDGLNQGRDFVGIQSLFEEMVQDSSSHGDLSFGAYNQVIQYLAKAEKLEVAFCCFK 263

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           + +E G ++    YN L+ +  + G   +AFEI+E M+ +++   D  T+  +I   +  
Sbjct: 264 KAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLL-DGSTYELIIPSLAKS 322

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
           G++  A  +F +M E    P+  V +SL+   GKA R D  ++    +   G  P     
Sbjct: 323 GRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMF 382

Query: 485 GCLLNVMTQTPKEELG-KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543
             L++   +  K +   +L + ++KS    G+     L    IE   K    E+  S+ K
Sbjct: 383 VSLIDSYAKAGKLDTALRLWDEMKKS----GFRPNFGLYTMIIESHAKSGKLEVAMSVFK 438

Query: 544 DVKKA-------YCNCLIDLCVNLNLLENACKL 569
           D++KA         +CL+++      +++A K+
Sbjct: 439 DMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 471


>gi|357167657|ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Brachypodium distachyon]
          Length = 560

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 158/362 (43%), Gaps = 8/362 (2%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV-KPDNVTFSTL 206
           AA AL     +     E   YN  M  F  C  +  A  LF+  +  G   PD  +F+  
Sbjct: 175 AAAALLSKAPQFGCCVEAYAYNKLMNSFIGCGRVQDAVALFEGWIQGGAYSPDVWSFNVA 234

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
           I          KA+E  ERM  FGC PD +T + ++    R   V     +  R + +  
Sbjct: 235 IKGVCQVGDVQKALELVERMAEFGCSPDTVTNNILVGGLCRVKEVSRGREVLRRLQRDGV 294

Query: 267 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
            + PN   ++++I  Y  +G  +  + VY +M   G  PN +TYN L++  G+A      
Sbjct: 295 CM-PNVVTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSA 353

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
             +Y++M      P+  T+++L+  Y R    +D +  + EM +  +Q +   ++ ++  
Sbjct: 354 VAVYQQMILRRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILS 413

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
                 + EA    +++    +  P ++  + +I +    GKV EA  +  EM   G  P
Sbjct: 414 FCKQNRSAEALRFLKELNMRTDIAPRAFICNPVIDVLCKGGKVDEANLILMEMEGKGCRP 473

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----DRFCGCLLNVMTQTPKEELG 500
           + +  T LI  +    R  + +   N++ + G +PD    + F GCLL     +  + + 
Sbjct: 474 DKYTYTILIIGHCMKGRISEAITFFNKMVDTGCSPDSITVNSFIGCLLKAGMPSEVDRIM 533

Query: 501 KL 502
           K+
Sbjct: 534 KI 535



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 15/200 (7%)

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGE 357
           + + P+  +Y  ++  + ++ R      ++ +MTD +G  PN    + L  +   A + +
Sbjct: 115 LAIPPSAHSYRYVISMLCQSSRHTDALKLFDQMTDQSGHFPNARFLSFLAGSCANAGFLD 174

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
              ++  +  + G  +    YN L+      G   +A  +FE         PD W+F+  
Sbjct: 175 AAAALLSKAPQFGCCVEAYAYNKLMNSFIGCGRVQDAVALFEGWIQGGAYSPDVWSFNVA 234

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA---LNRLPE 474
           I      G V +A  +   M E G  P+      L+   G   R  +V R    L RL  
Sbjct: 235 IKGVCQVGDVQKALELVERMAEFGCSPDTVTNNILV---GGLCRVKEVSRGREVLRRLQR 291

Query: 475 LGITPDDRFCGCLLNVMTQT 494
            G+        C+ NV+T T
Sbjct: 292 DGV--------CMPNVVTYT 303


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 162/349 (46%), Gaps = 3/349 (0%)

Query: 135 CVIILNNMTNPDTAAL--ALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDML 192
           C  +L ++   D   L   L  F        +V  Y+  ++   K RD D A+++F++M 
Sbjct: 211 CNGLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMR 270

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
            R    + VT++ +IS    +    +A  + E M  +G  PDA TY ++++   +   ++
Sbjct: 271 RRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLK 330

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  L D       + +   + TL+  +   G      ++ +EM + GV+PN I Y+NL+
Sbjct: 331 EAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLI 390

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
             + +  +  +   + KEM   GL P+  TY  L++ + +    +    +  EM+  G+ 
Sbjct: 391 RGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGIL 450

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  Y  ++      G + EA  + E+M  SE  +P+++ ++ +I   S  G +S A  
Sbjct: 451 PNVYSYGIMINGLCQNGESKEAGNLLEEM-ISEGLKPNAFMYAPLIIGHSKEGNISLACE 509

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
              +M +A   P+LF   SLI+      R ++      ++ + G+ PD+
Sbjct: 510 ALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDE 558



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 157/344 (45%), Gaps = 5/344 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +   Y   M    K   L +A+ L D+M   G+KP+ V + TL+          +A +
Sbjct: 310 SPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFD 369

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + M S G  P+ + Y ++I    + G +  A  L         R D   ++ L++ + 
Sbjct: 370 ILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHF 429

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
              + DG   +  EM+  G+ PN+ +Y  +++ + +     +   + +EM   GL PN  
Sbjct: 430 QQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAF 489

Query: 342 TYASLLRAYGRARYGEDTLS--VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
            YA L+   G ++ G  +L+     +M +  +   +  YN+L+   + VG  +EA E + 
Sbjct: 490 MYAPLI--IGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYA 547

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
            ++      PD +T+S +I      G + +A+ +  +ML +G +PN    T L++ Y K+
Sbjct: 548 QVQ-KRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKS 606

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 503
              + V   L  +   G  PD+   G ++  ++++   E+  +V
Sbjct: 607 NDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMV 650



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 147/309 (47%), Gaps = 6/309 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  + K  +L+KA++L   ML+ G+KP+  T++ L+     +N   K     + M 
Sbjct: 561 YSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSML 620

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD   Y  +I    R+ N+E+AF +           D + +S+LI       + +
Sbjct: 621 GSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADME 680

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + + +EM   G++P ++ YN L+D   R+    + + ++  +   GL PN  TY +L+
Sbjct: 681 KAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALI 740

Query: 348 RAYGRARYGE--DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
              G  + G+  D   +Y+EM ++G+     +YN L   C+D    ++A  + E+M +  
Sbjct: 741 D--GNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFN-- 796

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
               +   F++++     RGK+ E E + + M++    PN   +  ++  +GKA +  + 
Sbjct: 797 RGYANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEA 856

Query: 466 VRALNRLPE 474
            R    L +
Sbjct: 857 HRVFAELQQ 865



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 135/298 (45%), Gaps = 1/298 (0%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A  L ++M+  G+KP+   ++ LI         + A E  E+M      PD   Y+S+I
Sbjct: 471 EAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLI 530

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
                 G +E A   Y + +      D   +S LI  Y   GN +    +  +M   G+K
Sbjct: 531 KGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLK 590

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           PN  TY +LL+   ++    +V +I + M  +G  P+ + Y  ++R   R+   E    V
Sbjct: 591 PNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMV 650

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
             E+++ G+   + +Y++L++    +   ++A  + ++M + E  +P    ++++I    
Sbjct: 651 LTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEM-AKEGLEPGIVCYNALIDGFC 709

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             G +S A  +F+ +L  G  PN    T+LI    K     D       + + GI PD
Sbjct: 710 RSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPD 767



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 147/326 (45%), Gaps = 7/326 (2%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K+    +   YN  M+   +  D D A  L ++M + G+ P+  ++  +I+    N    
Sbjct: 411 KVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESK 470

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +A    E M S G  P+A  Y+ +I  + + GN+ +A    ++        D   +++LI
Sbjct: 471 EAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLI 530

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           K   T G  +     Y +++  G+ P+  TY+ L+    +     +   + ++M ++GL 
Sbjct: 531 KGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLK 590

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           PN +TY  LL  Y ++   E   S+ + M   G +    +Y  ++   +     + AF +
Sbjct: 591 PNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMV 650

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
             +++ +    PD   +SS+I+       + +A  + +EM + G EP +    +LI  + 
Sbjct: 651 LTEVEKN-GLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGF- 708

Query: 458 KAQRTDDVVRALNRLPEL---GITPD 480
              R+ D+ RA N    +   G+ P+
Sbjct: 709 --CRSGDISRARNVFDSILAKGLVPN 732



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 150/348 (43%), Gaps = 45/348 (12%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S    + +V +  ++K   +  A ++   M D G+ P     + L+     + L   A+E
Sbjct: 170 SPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLK----DLLRADAME 225

Query: 222 WFERMPSF----GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
              ++  F    G  PD  TYS+ I+A+ +                              
Sbjct: 226 LLWKLKGFMEGAGILPDVYTYSTFIEAHCK------------------------------ 255

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
                A +FD    V+EEM+      N +TYN ++  + R+    +     +EM D GLS
Sbjct: 256 -----ARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLS 310

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P+  TY +L+    +    ++  ++  EM   G++ ++ +Y TL+      G T EAF+I
Sbjct: 311 PDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDI 370

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            ++M S+   QP+   + ++I      G++  A  +  EM++ G  P+ F    L+Q + 
Sbjct: 371 LKEMISA-GVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHF 429

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 504
           +    D     LN +   GI P+    G ++N + Q  + +E G L+E
Sbjct: 430 QQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLE 477



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 140/316 (44%), Gaps = 5/316 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y+  ++   K   L +A +L  +M+  G++PD  T++ L+      +  + A E    
Sbjct: 384 IMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNE 443

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTA 283
           M + G  P+  +Y  MI+   + G  + A  L +   +E  +  PNAF  + LI  +   
Sbjct: 444 MRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLK--PNAFMYAPLIIGHSKE 501

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           GN        E+M    V P++  YN+L+  +    R  + +  Y ++   GL P+  TY
Sbjct: 502 GNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTY 561

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+  Y +    E    + R+M   G++ +   Y  LL         ++   I + M  
Sbjct: 562 SGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLG 621

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S + +PD+  +  +I   S    +  A  +  E+ + G  P+L + +SLI    K    +
Sbjct: 622 SGD-KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADME 680

Query: 464 DVVRALNRLPELGITP 479
             V  L+ + + G+ P
Sbjct: 681 KAVGLLDEMAKEGLEP 696



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 126/265 (47%), Gaps = 1/265 (0%)

Query: 188 FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
            + M    V PD   +++LI          +A E++ ++   G  PD  TYS +I  Y +
Sbjct: 511 LEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCK 570

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
            GN+E A  L  +  N   + + + ++ L++ Y  + +++   ++ + M   G KP+   
Sbjct: 571 TGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHI 630

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           Y  ++  + R++       +  E+  NGL P+ + Y+SL+    +    E  + +  EM 
Sbjct: 631 YGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMA 690

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
           ++G++  +  YN L+      G    A  +F+ +  ++   P+  T++++I      G +
Sbjct: 691 KEGLEPGIVCYNALIDGFCRSGDISRARNVFDSIL-AKGLVPNCVTYTALIDGNCKNGDI 749

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSL 452
           ++A  ++ EML+ G  P+ FV   L
Sbjct: 750 TDAFDLYKEMLDRGIAPDAFVYNVL 774



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 113/248 (45%), Gaps = 3/248 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I++ N++  +   +A    T   K     ++ +Y+  +    K  D++KA  L D+M   
Sbjct: 633 IVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKE 692

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G++P  V ++ LI     +   ++A   F+ + + G  P+ +TY+++ID   + G++  A
Sbjct: 693 GLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDA 752

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
           F LY    +     D   ++ L      A + +  L + EEM   G   N+  +N L+  
Sbjct: 753 FDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-NVSLFNTLVHG 811

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
             +  +  + + +   M D  + PN  T   ++  +G+A    +   V+ E+++K    S
Sbjct: 812 FCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQKKASQS 871

Query: 375 VTLYNTLL 382
            T   +LL
Sbjct: 872 ATDRFSLL 879


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 154/309 (49%), Gaps = 1/309 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +  F     L++A RLF +M+ R V PD VTF+ L+       + ++A    
Sbjct: 270 DVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVS 329

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G +P+A TY++++D Y     ++ A  +      +    + ++++ LI  Y  +
Sbjct: 330 ETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKS 389

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              +    +  EM    + P+ +TY+ L+  + +  RP +   ++KEM  +GL P+   Y
Sbjct: 390 KRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAY 449

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + LL  + +  + ++ L + +EM E+ ++ ++ LY  L+      G  + A E+F  + S
Sbjct: 450 SILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKL-S 508

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           ++  +PD WT++ MI      G   EA   F +M + GF P+      +IQ + + Q + 
Sbjct: 509 ADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSS 568

Query: 464 DVVRALNRL 472
             ++ ++ +
Sbjct: 569 TAIQLIDEM 577



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 150/345 (43%), Gaps = 3/345 (0%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           ++N + N      A+  F   + +  E  VI YN  +    K  +   A R+F  M    
Sbjct: 172 LINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNR 231

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
            KP+ VT++T+I     + L N+AVE+   M   G  PD +TY++++  +   G +  A 
Sbjct: 232 GKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEAT 291

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L+          D   F+ L+      G       V E M   G +PN  TYN L+D  
Sbjct: 292 RLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGY 351

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
               +  +   +   M   G +PN ++Y  L+  Y +++   +   +  EM EK +    
Sbjct: 352 CLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDT 411

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y+TL+     VG   EA  +F++M SS    PD   +S ++      G + EA  +  
Sbjct: 412 VTYSTLMQGLCQVGRPREALNLFKEMCSS-GLLPDLMAYSILLDGFCKHGHLDEALKLLK 470

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           EM E   +PN+ + T LI+    A + +      ++L   GI PD
Sbjct: 471 EMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPD 515



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 171/390 (43%), Gaps = 36/390 (9%)

Query: 147 TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           ++A++L    +    +  V   NV +    +   +D A  +   M   G++PD +TF+TL
Sbjct: 113 SSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTL 172

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY-------- 258
           I+         +AV  F  M   G +P+ ++Y+++I+   + GN  MA  ++        
Sbjct: 173 INGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRG 232

Query: 259 ----------------DRARNEKWR---------IDPNA--FSTLIKLYGTAGNFDGCLN 291
                           DR  NE            I P+   ++T++  + + G  +    
Sbjct: 233 KPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATR 292

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           +++EM    V P+ +T+N L+D + +     + + + + MT+ G  PN  TY +L+  Y 
Sbjct: 293 LFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYC 352

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
                ++ + V   M  KG   +++ YN L+         +EA  +  +M S +N  PD+
Sbjct: 353 LHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEM-SEKNLTPDT 411

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            T+S+++      G+  EA  +F EM  +G  P+L   + L+  + K    D+ ++ L  
Sbjct: 412 VTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKE 471

Query: 472 LPELGITPDDRFCGCLLNVMTQTPKEELGK 501
           + E  I P+      L+  M    K E+ K
Sbjct: 472 MHERRIKPNIILYTILIRGMFIAGKLEVAK 501



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 166/354 (46%), Gaps = 5/354 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL   Y   ++     V+ +   +    K +    A  L + M   GV  +  + + LI+
Sbjct: 80  ALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLIN 139

Query: 209 C-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           C  R++++ + AV    +M   G  PDA+T++++I+     G ++ A GL++        
Sbjct: 140 CLCRLSHV-DFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHE 198

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            +  +++T+I      GN    + V+ +M+    KPN++TYN ++D++ + +   +    
Sbjct: 199 PNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEF 258

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
             EM D G+ P+  TY ++L  +       +   +++EM  + +      +N L+     
Sbjct: 259 LSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCK 318

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G   EA  + E M + +  +P+++T+++++       ++ EA  +   M+  G  PNL 
Sbjct: 319 EGMVSEARCVSETM-TEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLS 377

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT--PKEEL 499
               LI  Y K++R ++  R L+ + E  +TPD      L+  + Q   P+E L
Sbjct: 378 SYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREAL 431



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 134/300 (44%), Gaps = 1/300 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +D A   F  M+    +P  V F   +         + AV    +M  FG   +  + + 
Sbjct: 77  IDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNV 136

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I+   R  +V+ A  +  +      + D   F+TLI      G     + ++ EM   G
Sbjct: 137 LINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSG 196

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
            +PN+I+YN +++ + +         ++++M  N   PN  TY +++ +  + R   + +
Sbjct: 197 HEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAV 256

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
               EM ++G+   V  YNT+L     +G  +EA  +F++M    N  PD+ TF+ ++  
Sbjct: 257 EFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEM-VGRNVMPDTVTFNILVDG 315

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               G VSEA  +   M E G EPN +   +L+  Y    + D+ ++ L  +   G  P+
Sbjct: 316 LCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPN 375



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 110/217 (50%), Gaps = 4/217 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ +  + K + +++A+RL  +M ++ + PD VT+STL+        P +A+  F+ M 
Sbjct: 379 YNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMC 438

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGN 285
           S G  PD + YS ++D + + G+++ A  L         RI PN   ++ LI+    AG 
Sbjct: 439 SSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHER--RIKPNIILYTILIRGMFIAGK 496

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    ++ ++ A G++P++ TYN ++  + +     +    +++M D+G  P+  +Y  
Sbjct: 497 LEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNV 556

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +++ + + +     + +  EM  K      + +  LL
Sbjct: 557 IIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLL 593



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 114/253 (45%), Gaps = 1/253 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  M  +     +D+A ++   M+ +G  P+  +++ LI+    +   N+A      M 
Sbjct: 344 YNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMS 403

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                PD +TYS+++    + G    A  L+    +     D  A+S L+  +   G+ D
Sbjct: 404 EKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLD 463

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L + +EM    +KPN+I Y  L+  M  A +    K ++ +++ +G+ P+  TY  ++
Sbjct: 464 EALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMI 523

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           +   +    ++    +R+M++ G       YN ++        +  A ++ ++M   +  
Sbjct: 524 KGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEM-VGKRF 582

Query: 408 QPDSWTFSSMITI 420
             DS TF  ++ +
Sbjct: 583 SADSSTFQMLLDL 595



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 104/228 (45%), Gaps = 10/228 (4%)

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           + D  L  +  M  +  +P+++ +   L ++ + K+     ++  +M   G++ N  +  
Sbjct: 76  SIDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLN 135

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L+    R  + +  +SV  +M + G+Q     +NTL+    + G   EA  +F +M  S
Sbjct: 136 VLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWS 195

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            + +P+  +++++I      G    A  +F +M +   +PN+    ++I    K +  ++
Sbjct: 196 GH-EPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNE 254

Query: 465 VVRALNRLPELGITPD--------DRFCGC-LLNVMTQTPKEELGKLV 503
            V  L+ + + GI PD          FC    LN  T+  KE +G+ V
Sbjct: 255 AVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNV 302



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 63/131 (48%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L    ++ +    +ILY + ++       L+ A+ LF  +   G++PD  T++ +I 
Sbjct: 465 ALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIK 524

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 L ++A E+F +M   G  PD+ +Y+ +I  + +  +   A  L D    +++  
Sbjct: 525 GLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSA 584

Query: 269 DPNAFSTLIKL 279
           D + F  L+ L
Sbjct: 585 DSSTFQMLLDL 595


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 164/376 (43%), Gaps = 36/376 (9%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI--SCAR------- 211
            S  V  YNV ++      DL+K       M   G+ P+ VT++TLI  SC +       
Sbjct: 203 VSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAM 262

Query: 212 ---------------------MNNLPNKAV-----EWFERMPSFGCDPDALTYSSMIDAY 245
                                +N L  K       E  E M   G  PD +TY+++++ +
Sbjct: 263 ALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGF 322

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
            + GN+     L      +    +   ++TLI     AGN    + ++++M+  G++PN 
Sbjct: 323 CKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNE 382

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
            TY  L+D   +     +   +  EM  +G SP+  TY +L+  Y      ++ + + R 
Sbjct: 383 RTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRG 442

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M E+G+   V  Y+T++A         +AF++ E+M   +   PD+ T+SS+I     + 
Sbjct: 443 MVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEM-VEKGVLPDTVTYSSLIQGLCLQQ 501

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 485
           K+ EA  +F EM+  G  P+    TSLI  Y         +R  + + + G  PD+    
Sbjct: 502 KLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYS 561

Query: 486 CLLNVMTQTPKEELGK 501
            L+N + +  + ++ K
Sbjct: 562 VLINGLNKKARTKVAK 577



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 165/347 (47%), Gaps = 14/347 (4%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           + +   L ++M  +G+ PD VT++TL++   +  NL ++ +     M   G  P+ +TY+
Sbjct: 293 MSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNL-HQGLVLLSEMVGKGLSPNVVTYT 351

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           ++I+   +AGN+  A  ++D+ R    R +   ++TLI  +   G  +    V  EM   
Sbjct: 352 TLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVS 411

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G  P+++TYN L+       R  +   I + M + GL P+  +Y++++  + R R     
Sbjct: 412 GFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKA 471

Query: 360 LSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
             +  EM EKG+      Y++L+  +C       EAF++F +M       PD  T++S+I
Sbjct: 472 FQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLV-EAFDLFREMMR-RGLPPDEVTYTSLI 529

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 G++S+A  + +EM++ GF P+    + LI    K  RT    R L +L      
Sbjct: 530 NAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESV 589

Query: 479 PDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQD 525
           PDD       N + +       K VE + K     G+ +K L+ E D
Sbjct: 590 PDD----VTYNTLIENCSNNEFKSVEGLVK-----GFCMKGLMNEAD 627



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 157/337 (46%), Gaps = 6/337 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTM-KVFRKC----RDLDKAERLFDDMLDRGVKPDNVTF 203
           AL L +  N+   +  V+ YN  +  + R+     RD D AER+F DM+  GV P+  T+
Sbjct: 151 ALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTY 210

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
           + +I          K + +  +M   G  P+ +TY+++IDA  +   V+ A  L      
Sbjct: 211 NVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAV 270

Query: 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
                +  +++++I      G       + EEM+  G+ P+ +TYN L++   +     Q
Sbjct: 271 GGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQ 330

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
              +  EM   GLSPN  TY +L+    +A      + ++ +M+ +G++ +   Y TL+ 
Sbjct: 331 GLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLID 390

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
                G  +EA+++  +M  S    P   T+++++      G+V EA  +   M+E G  
Sbjct: 391 GFCQKGLMNEAYKVLSEMIVS-GFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLP 449

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           P++   +++I  + + +      +    + E G+ PD
Sbjct: 450 PDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPD 486



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 133/311 (42%), Gaps = 21/311 (6%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  V+ YN  +  +     + +A  +   M++RG+ PD V++ST+I+         KA +
Sbjct: 414 SPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQ 473

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             E M   G  PD +TYSS+I        +  AF L+          D   +++LI  Y 
Sbjct: 474 MKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYC 533

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G     L +++EM   G  P+ +TY+ L++ + +  R    K +  ++      P+  
Sbjct: 534 VDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDV 593

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +L+       +     SV   +K   M+                G  +EA  +F+ M
Sbjct: 594 TYNTLIENCSNNEFK----SVEGLVKGFCMK----------------GLMNEADRVFKTM 633

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
               N +P++  ++ MI   S  G V +A  ++ E+  + F  +   + +L++   +   
Sbjct: 634 L-QRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAREGM 692

Query: 462 TDDVVRALNRL 472
            D++ R L  +
Sbjct: 693 NDELSRLLQNI 703



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 103/252 (40%), Gaps = 43/252 (17%)

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA----KRPW-QVKT 326
            F  ++K     G     L +       G  P +++YN +LD + R      R +   + 
Sbjct: 134 VFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAER 193

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL---- 382
           ++++M  NG+SPN  TY  ++R        E  L   R+M+++G+  +V  YNTL+    
Sbjct: 194 VFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASC 253

Query: 383 --------------------------------AMCADVGYTDEAFEIFEDMKSSENCQPD 410
                                            +C   G   E  E+ E+M+  +   PD
Sbjct: 254 KKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGK-GRMSEVGELVEEMR-GKGLVPD 311

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
             T+++++      G + +   + +EM+  G  PN+   T+LI C  KA      V   +
Sbjct: 312 EVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFD 371

Query: 471 RLPELGITPDDR 482
           ++   G+ P++R
Sbjct: 372 QMRVRGLRPNER 383


>gi|255553476|ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543051|gb|EEF44586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 486

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 135/278 (48%), Gaps = 2/278 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y+V + +  K    D   R+  +M   GV+   VTF+T+I+      +  +     
Sbjct: 198 DVYTYSVLINICTKLHRFDLIGRILSEMSYLGVECSTVTFNTIINGYGKAKMFREMENSL 257

Query: 224 ERMPSFGCD-PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
             M   G   PD  T++S+I AYG +G +E     Y+  +      D   F+ LIK YG 
Sbjct: 258 TNMIEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWYNEFQLMGISPDIKTFNILIKSYGK 317

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           AG ++   +V E MK     P ++TYN +++T GRA     +   +K M   G+ PN  T
Sbjct: 318 AGMYEKINSVIEFMKKRFFPPTVVTYNIIIETFGRAGDIENMDEYFKTMKHLGMKPNAIT 377

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y SL+ AY +A       S+ R+++   + L  T +N ++      G  D+  E+F +M+
Sbjct: 378 YCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCIINAYGQAGDVDKMAELFLEMR 437

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
             E C PD+ TF++MI     +G    A+A+   ML A
Sbjct: 438 ERE-CMPDNVTFATMIQAYRGQGMTEAAQALEKMMLAA 474



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 140/316 (44%), Gaps = 3/316 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   + +  KCR  ++A  LF+ M   G++P    ++ L+S    + L  KA    + M 
Sbjct: 131 YTKLLMMLGKCRQPEEARLLFEVMQTEGLRPTIDVYTALVSAYGESGLLAKAFSTVDEMK 190

Query: 228 SFG-CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
           S   C PD  TYS +I+   +    ++   +               F+T+I  YG A  F
Sbjct: 191 SVSDCKPDVYTYSVLINICTKLHRFDLIGRILSEMSYLGVECSTVTFNTIINGYGKAKMF 250

Query: 287 DGCLNVYEEMKAIGVK-PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               N    M  IG   P++ T+N+++   G + R  +++  Y E    G+SP+  T+  
Sbjct: 251 REMENSLTNMIEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWYNEFQLMGISPDIKTFNI 310

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+++YG+A   E   SV   MK++    +V  YN ++      G  +   E F+ MK   
Sbjct: 311 LIKSYGKAGMYEKINSVIEFMKKRFFPPTVVTYNIIIETFGRAGDIENMDEYFKTMKHL- 369

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +P++ T+ S+++  S  G + +  ++  ++  +    +      +I  YG+A   D +
Sbjct: 370 GMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCIINAYGQAGDVDKM 429

Query: 466 VRALNRLPELGITPDD 481
                 + E    PD+
Sbjct: 430 AELFLEMRERECMPDN 445



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 129/299 (43%), Gaps = 3/299 (1%)

Query: 197 KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256
           +P   T++ L+        P +A   FE M + G  P    Y++++ AYG +G +  AF 
Sbjct: 125 EPRCQTYTKLLMMLGKCRQPEEARLLFEVMQTEGLRPTIDVYTALVSAYGESGLLAKAFS 184

Query: 257 LYDRARN-EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
             D  ++    + D   +S LI +      FD    +  EM  +GV+ + +T+N +++  
Sbjct: 185 TVDEMKSVSDCKPDVYTYSVLINICTKLHRFDLIGRILSEMSYLGVECSTVTFNTIINGY 244

Query: 316 GRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           G+AK   +++     M + G S P+  T+ S++ AYG +   E     Y E +  G+   
Sbjct: 245 GKAKMFREMENSLTNMIEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWYNEFQLMGISPD 304

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           +  +N L+      G  ++   + E MK      P   T++ +I      G +   +  F
Sbjct: 305 IKTFNILIKSYGKAGMYEKINSVIEFMKK-RFFPPTVVTYNIIIETFGRAGDIENMDEYF 363

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
             M   G +PN     SL+  Y KA     V   L ++    +  D  F  C++N   Q
Sbjct: 364 KTMKHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCIINAYGQ 422


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 161/334 (48%), Gaps = 4/334 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERM 226
           Y + +       D+ K E +FD++  + V  D   +S +I+   R  N+  +A E F+  
Sbjct: 206 YTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNV-RRASEVFDEC 264

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G +P+  TY ++I+ + + G +E A  L    +      +   F+T+I  Y   G  
Sbjct: 265 VGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRHGMV 324

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  L +   M+ +G++ ++ TYN L   + R  R    K +   MT+NG+  N+ +Y +L
Sbjct: 325 DKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTL 384

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  + +     +   ++R+M+ KG + SV  YN ++      G   EA E F+     + 
Sbjct: 385 ISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREA-ERFKKEMEKKG 443

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             PD +T+++++      GKV  A  +F EM + G +PN+   T+LI    K  R+++  
Sbjct: 444 LVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAF 503

Query: 467 RALNRLPELGITPDDRFCGCLLNVM-TQTPKEEL 499
           +  + +   G+TPDD     L+  + T   K+E+
Sbjct: 504 QFYDNMLAAGLTPDDTLYSMLVGSLHTDKRKDEI 537



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 140/312 (44%), Gaps = 1/312 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           +V +  F K   +D A RL D+M   GVK +   ++ L+          +  E  + M S
Sbjct: 137 SVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEMES 196

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G +P   TY+ ++D    AG++     ++D  + +    D   +S +I  Y  AGN   
Sbjct: 197 GGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRR 256

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
              V++E    G++PN  TY  L++   +  +    + +  +M   G+  N   + +++ 
Sbjct: 257 ASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMID 316

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            Y R    +  L +   M+  G+QL V  YNTL      V   ++A ++   M +    +
Sbjct: 317 GYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIM-TENGVE 375

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
            +  +++++I+I S  G + EA  +F +M   G  P++     +I  Y K+    +  R 
Sbjct: 376 SNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERF 435

Query: 469 LNRLPELGITPD 480
              + + G+ PD
Sbjct: 436 KKEMEKKGLVPD 447



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 135/292 (46%), Gaps = 36/292 (12%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           + +V  Y+  +  + +  ++ +A  +FD+ +  G++P+  T+  LI+          A  
Sbjct: 235 AGDVYFYSAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEM 294

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVE-----------------------MAFGLY 258
               M   G   + + +++MID Y R G V+                       +A GL 
Sbjct: 295 LLTDMQLRGVGHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLC 354

Query: 259 DRARNEKWR----------IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
              R E  +          ++ N  +++TLI ++   G+      ++ +M+  G +P+++
Sbjct: 355 RVNRMEDAKKLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVV 414

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TYN ++D   ++    + +   KEM   GL P+  TYA+L+  +      +  L ++ EM
Sbjct: 415 TYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEM 474

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
           K++G + +V  Y  L++  A  G ++EAF+ +++M ++    PD   +S ++
Sbjct: 475 KQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAA-GLTPDDTLYSMLV 525



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 137/327 (41%), Gaps = 21/327 (6%)

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
           I P + S ++  +  AG  D    + +EM   GVK N   YN LLDT  R K   +V  +
Sbjct: 131 ITPLSASVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEV 190

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            KEM   G+ P   TY  L+     A       SV+ E+K K +   V  Y+ ++     
Sbjct: 191 LKEMESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCR 250

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G    A E+F++   +   +P+  T+ ++I      G++  AE +  +M   G   N  
Sbjct: 251 AGNVRRASEVFDECVGN-GIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQI 309

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGI-----TPDDRFCG-CLLNVMTQTPKEELGK 501
           +  ++I  Y +    D  +     +  +GI     T +   CG C +N M     E+  K
Sbjct: 310 IFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRM-----EDAKK 364

Query: 502 LVECVEKSNSKLGYV-VKLLLEEQDIEGDFKKEATELFNSISKDVKKAYC---NCLIDLC 557
           L+  + ++  +  YV    L+     EGD   EA  LF  +     +      N +ID  
Sbjct: 365 LLHIMTENGVESNYVSYTTLISIHSKEGDM-VEARRLFRDMEGKGSRPSVVTYNVMIDGY 423

Query: 558 VNLNLLENACK----LLELGLTLEVYT 580
           +    +  A +    + + GL  +VYT
Sbjct: 424 IKSGSIREAERFKKEMEKKGLVPDVYT 450



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 90/199 (45%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL +     ++    +V  YN       +   ++ A++L   M + GV+ + V+++TLIS
Sbjct: 327 ALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTLIS 386

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    +A   F  M   G  P  +TY+ MID Y ++G++  A         +    
Sbjct: 387 IHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVP 446

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   ++ L+  +   G  D  L ++EEMK  G KPN++ Y  L+  + +  R  +    Y
Sbjct: 447 DVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFY 506

Query: 329 KEMTDNGLSPNWNTYASLL 347
             M   GL+P+   Y+ L+
Sbjct: 507 DNMLAAGLTPDDTLYSMLV 525


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 156/351 (44%), Gaps = 36/351 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI---------------- 207
           +++ Y+  +    K R + KAE     M+++GV PDN T++ LI                
Sbjct: 257 DLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVF 316

Query: 208 -SCARMNNLPN------------------KAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
               R + LP+                  +A + F+ M   G +PD  +Y  M++ Y   
Sbjct: 317 KEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATK 376

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           G +     L+D    +    D   FS LIK Y   G  D  + ++ EM+  GVKP+++TY
Sbjct: 377 GCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTY 436

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
             ++  + R  +       + +M D G++P+   Y  L++ +           +  E+  
Sbjct: 437 TTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMN 496

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            GM+L +  +++++     +G   +A  IF D+  +    PD+  +S ++      GK+ 
Sbjct: 497 NGMRLDIVFFSSIINNLCKLGRIMDAQNIF-DLTVNVGQHPDAVVYSMLMDGYCLVGKME 555

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           +A  +F+ M+ AG EPN+ V  +L+  Y K  R D+ +     + + GI P
Sbjct: 556 KALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 606



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 146/318 (45%), Gaps = 1/318 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           + ++  ++V +K +  C  LDKA  +F++M D GVKPD VT++T+I+        + A+E
Sbjct: 395 APDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAME 454

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F +M   G  PD   Y  +I  +   G++  A  L     N   R+D   FS++I    
Sbjct: 455 KFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLC 514

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G      N+++    +G  P+ + Y+ L+D      +  +   ++  M   G+ PN  
Sbjct: 515 KLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV 574

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            Y +L+  Y +    ++ LS++REM +KG++ S  LYN ++      G T  A   F +M
Sbjct: 575 VYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEM 634

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             S     +  T++ ++          EA  +F E+     + ++  L ++I    + +R
Sbjct: 635 TES-GIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRR 693

Query: 462 TDDVVRALNRLPELGITP 479
            ++       +   G+ P
Sbjct: 694 VEEAKDLFASISRSGLVP 711



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 148/313 (47%), Gaps = 3/313 (0%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV--KPDNVTF 203
           D A   L + T +L    +V  Y++ +K         +A+ L   M + G    PD V +
Sbjct: 167 DEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAY 226

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
           +T+I C       NKA + F+ M   G  PD +TYSS++ A  +A  +  A     +  N
Sbjct: 227 TTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVN 286

Query: 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
           +    D   ++ LI  Y + G +   + V++EM+   + P+++T N L+ ++ +  +  +
Sbjct: 287 KGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKE 346

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
            + ++  M   G +P+  +Y  +L  Y       D   ++  M   G+   +  ++ L+ 
Sbjct: 347 ARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIK 406

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
             A+ G  D+A  IF +M+     +PD  T++++I      GK+ +A   FN+M++ G  
Sbjct: 407 AYANCGMLDKAMIIFNEMR-DHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVA 465

Query: 444 PNLFVLTSLIQCY 456
           P+ +    LIQ +
Sbjct: 466 PDKYAYHCLIQGF 478



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 146/315 (46%), Gaps = 1/315 (0%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LFD ML  G+ PD  TFS LI       + +KA+  F  M   G  PD +TY+++I A  
Sbjct: 385 LFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALC 444

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           R G ++ A   +++  ++    D  A+  LI+ + T G+      +  E+   G++ +++
Sbjct: 445 RIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIV 504

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
            ++++++ + +  R    + I+    + G  P+   Y+ L+  Y      E  L V+  M
Sbjct: 505 FFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAM 564

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
              G++ +V +Y TL+     +G  DE   +F +M   +  +P +  ++ +I      G+
Sbjct: 565 VSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREM-LQKGIKPSTILYNIIIDGLFVAGR 623

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
              A+  F+EM E+G   N      +++ + K +  D+ +     L  + +  D      
Sbjct: 624 TVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNT 683

Query: 487 LLNVMTQTPKEELGK 501
           ++  M QT + E  K
Sbjct: 684 MIAGMFQTRRVEEAK 698



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 128/292 (43%), Gaps = 8/292 (2%)

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           R + P + T++ L+ C    + P  A+ +F ++   G   D +  + ++  +  A   + 
Sbjct: 109 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDE 168

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKL-----YGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           A  +    R  +    P+ FS  I L      G +G  D  L +  E  A+   P+++ Y
Sbjct: 169 ALDILLH-RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPDVVAY 226

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
             ++D   +     +   ++KEM   G+ P+  TY+S++ A  +AR      +  R+M  
Sbjct: 227 TTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVN 286

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
           KG+      YN L+   +  G   EA  +F++M+   +  PD  T + ++      GK+ 
Sbjct: 287 KGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRR-HSILPDVVTLNMLMGSLCKYGKIK 345

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           EA  +F+ M   G  P++F    ++  Y       D+    + +   GI PD
Sbjct: 346 EARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 397



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 127/296 (42%), Gaps = 12/296 (4%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL---- 236
           LD+ +R    +L R +       +   S A   + P  AV  F R  S    P  L    
Sbjct: 56  LDELQRRGTPVLGRDLNGFLAALARAPSSAACGSGPALAVALFNRAASRAQGPRVLSPTS 115

Query: 237 -TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY-E 294
            TY+ ++D   RA   E+A   + +      R+D    + L+K +  A   D  L++   
Sbjct: 116 HTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLH 175

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLRAYGR 352
               +G  P++ +Y+ LL ++    +  Q   + + M + G   SP+   Y +++  + +
Sbjct: 176 RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFK 235

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
                    +++EM ++G+   +  Y++++          +A E F     ++   PD+W
Sbjct: 236 EGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKA-EAFLRQMVNKGVLPDNW 294

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC---YGKAQRTDDV 465
           T++++I   S  G+  EA  +F EM      P++  L  L+     YGK +   DV
Sbjct: 295 TYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDV 350



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 2/183 (1%)

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           + P   TY  L+D   RA RP      + ++   GL  +      LL+ +  A+  ++ L
Sbjct: 111 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 170

Query: 361 SVY-REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMI 418
            +      E G    V  Y+ LL    D G + +A ++   M +    C PD   ++++I
Sbjct: 171 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVI 230

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 G V++A  +F EM++ G  P+L   +S++    KA+        L ++   G+ 
Sbjct: 231 DCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVL 290

Query: 479 PDD 481
           PD+
Sbjct: 291 PDN 293


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 158/317 (49%), Gaps = 1/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI Y++ +    K  + ++A  LF++M+D+GV+P+ VTFS LI          KA +  E
Sbjct: 237 VISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLE 296

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  P+  TY+S+I  +   G++  A  L+    ++ +  D  +++ LI  Y    
Sbjct: 297 MMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTL 356

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +  + ++ EM  +G+ P++ T   LL  +  A +    K +++ +    +  +     
Sbjct: 357 KVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICC 416

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
             L    +  Y  + + ++ E++   M+L +  +  L+      G  + A+E+FE +   
Sbjct: 417 IFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKL-YE 475

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           E  QPD+  +SSMI     +G+V +A  +F +M E G  P+L   + L++ + ++ + + 
Sbjct: 476 EGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEK 535

Query: 465 VVRALNRLPELGITPDD 481
           VV+ L+R+ E  + PDD
Sbjct: 536 VVQLLHRMIEKDVWPDD 552



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 141/314 (44%), Gaps = 7/314 (2%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           ++ RG  PD VTF+TLI    + +   +A + F RM   GC P+ +TY ++I      GN
Sbjct: 152 IMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGN 211

Query: 251 VEMAFGLYDRARNEK----WRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPN 304
           + +A   +    N+     +   PN  S  I + G    GN++  + ++ EM   GV+PN
Sbjct: 212 INIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPN 271

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           ++T++ L+D + +  +  + K + + M   G+ PN  TY SL++ +           ++ 
Sbjct: 272 VVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFV 331

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
            M  KG +  V  YN L+         +EA ++F +M       PD  T   ++      
Sbjct: 332 SMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHV-GMWPDVKTSGVLLKALFLA 390

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
           GKV +A+ +F  +       +L +    +    K     + ++  N L    +  D    
Sbjct: 391 GKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETF 450

Query: 485 GCLLNVMTQTPKEE 498
           GCL++ + +  K E
Sbjct: 451 GCLIDGLCKAGKLE 464



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 140/340 (41%), Gaps = 44/340 (12%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMPS------FGCDPD 234
           +A +LF  M   G  P+ VT+ TLI   CA  N   N A++W + M +      F C P+
Sbjct: 179 EATKLFMRMQKLGCTPNVVTYGTLIKGLCALGN--INIALKWHQEMLNDTSPYVFNCRPN 236

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
            ++YS +ID   + GN E A  L++   ++  + +   FS LI +    G       + E
Sbjct: 237 VISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLE 296

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
            M  IG+ PN+ TY +L+            K ++  M   G  P+  +Y  L+  Y +  
Sbjct: 297 MMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTL 356

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE------------------ 396
             E+ + ++ EM   GM   V     LL      G  D+A E                  
Sbjct: 357 KVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICC 416

Query: 397 -----------IFEDMK-----SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
                      IFE MK      S N + D  TF  +I      GK+  A  +F ++ E 
Sbjct: 417 IFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEE 476

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           G +P+    +S+I  + K  + D       ++ E G +PD
Sbjct: 477 GIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPD 516



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 106/238 (44%), Gaps = 17/238 (7%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI YN+ +  + K   +++A +LF++ML  G+ PD  T   L+    +    + A E F
Sbjct: 341 DVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELF 400

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             +  +    D       +D   + G +  A  L++   +   ++D   F  LI     A
Sbjct: 401 RVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKA 460

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +    ++E++   G++P+ + Y++++    +  +  +   ++++M +NG SP+  TY
Sbjct: 461 GKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITY 520

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           + L+R +  +   E  + +   M EK                 DV   D  + I EDM
Sbjct: 521 SILMRGFYESNKLEKVVQLLHRMIEK-----------------DVWPDDGIYAIVEDM 561



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSE 429
           M  S+  +N LLA  A + +  + F +++ M  +    PD  T + +I  C C   +++E
Sbjct: 87  MMRSIFSFNRLLAGLAKIEHYSQVFSLYKQMHLA-GLWPDLLTLNILIN-CLCNVNRINE 144

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
             A    ++  G+ P++   T+LI+      R  +  +   R+ +LG TP+    G L+
Sbjct: 145 GLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLI 203


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 191/409 (46%), Gaps = 15/409 (3%)

Query: 159 LKASKEVILYNVTMKVFRKCRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
           ++   +V +Y  T+ +   C++  L +A  +FD+M++RG +P+ VT + L+    +    
Sbjct: 247 IRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNV 306

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           + A E F+ +  +G   D  TY+  I  Y + G V  A  ++D    E    +   +++L
Sbjct: 307 DMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSL 366

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           I     AG   G   + + M   G+ P+++T   LLD + ++KR  Q   ++ ++ ++GL
Sbjct: 367 IDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGL 426

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
           +P+  +Y  L+     +R   + +++ R+M  K +   +  Y+ L+      G    A+ 
Sbjct: 427 TPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWR 486

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           +  +M   +   PD+ T+S ++     +  + EA  +FN+M++ G EP++   T +I  Y
Sbjct: 487 LLNEMHV-KGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGY 545

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECVEKSN---SK 512
            K++R D+ +     +    + PD      L N + ++       K V  +   N     
Sbjct: 546 CKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSGSNSYEWKFVNVIRDINPPPRV 605

Query: 513 LGYVVKLL----LEEQDIEGDFKKEATELFNSISKDVKKA----YCNCL 553
           L Y+  L     L+ + +  +F   A  L  S+S+ +K      Y +CL
Sbjct: 606 LKYLAALCKSEHLDYKCLASEFASYAGSLQTSVSQHIKATMEMMYMHCL 654



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 141/294 (47%), Gaps = 1/294 (0%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           L D+M+ RG+      F+ LI     N +  +A E F+ M + G +P+ +T ++++  Y 
Sbjct: 242 LVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYC 301

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
             GNV+MA  L+D      ++ D   ++  I  Y   G     + V++EM   GV PN++
Sbjct: 302 LKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIV 361

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TYN+L+D + +A        I K M  +GL+P+  T   LL    +++  +  + ++ ++
Sbjct: 362 TYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQL 421

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
            E G+   V  Y  L+  C       EA  +  DM   +N  P   T+S +I      G+
Sbjct: 422 VESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMH-LKNLVPHIVTYSCLIDGLCRSGR 480

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +S A  + NEM   G  P+    + L+    K Q  D+ V   N++ + G+ PD
Sbjct: 481 ISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPD 534



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 127/301 (42%), Gaps = 1/301 (0%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           VK + V +S +I C   N   ++  E++  M   G  P+  TY S+I      G     F
Sbjct: 181 VKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGF 240

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
           GL D        +    F+ LI      G       +++EM   G +PN++T   L+   
Sbjct: 241 GLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGY 300

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
                    + ++  + + G   +  TY   +  Y +     D + V+ EM  +G+  ++
Sbjct: 301 CLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNI 360

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YN+L+      G    A+EI + M  S    PD  T   ++       ++ +A  +FN
Sbjct: 361 VTYNSLIDCLCKAGEVSGAWEIVKTMHRS-GLTPDIVTCCILLDGLCKSKRLDQAILLFN 419

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
           +++E+G  P+++  T LI     ++R  + +  L  +    + P      CL++ + ++ 
Sbjct: 420 QLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSG 479

Query: 496 K 496
           +
Sbjct: 480 R 480



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 130/318 (40%), Gaps = 9/318 (2%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           +F  +L RG   D V  +T++    +N    KA+E+ + + + G   + ++Y  +I+   
Sbjct: 94  IFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLC 153

Query: 247 RAGNVEMAFGLY------DRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKA 298
             G V  A  L            + + +  N   +S +I      G  D     Y EM  
Sbjct: 154 ENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMG 213

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
            GV PN  TY +L+  +    +  +   +  EM   GL  +   +  L+    +     +
Sbjct: 214 NGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVE 273

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
              ++ EM  +G + ++     L+      G  D A E+F D       + D WT++  I
Sbjct: 274 AREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELF-DAIGEWGFKRDVWTYNVFI 332

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 G+V +A  +F+EM   G  PN+    SLI C  KA         +  +   G+T
Sbjct: 333 HGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLT 392

Query: 479 PDDRFCGCLLNVMTQTPK 496
           PD   C  LL+ + ++ +
Sbjct: 393 PDIVTCCILLDGLCKSKR 410



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 104/239 (43%), Gaps = 8/239 (3%)

Query: 99  YNSLVKLAADLDSCSATEDDVFSVLRC-LGDDFLEQDCVIILNNMTNPDTAALALTYFTN 157
           YNSL+         S   + V ++ R  L  D +   C I+L+ +        A+  F  
Sbjct: 363 YNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVT--CCILLDGLCKSKRLDQAILLFNQ 420

Query: 158 KLKASKEVILYNVTMKVFRKC--RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
            +++     +++ T+ +   C  R + +A  L  DM  + + P  VT+S LI     +  
Sbjct: 421 LVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGR 480

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
            + A      M   G  PD +TYS ++DA  +  +++ A  L+++        D   ++ 
Sbjct: 481 ISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTI 540

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQVKTIYKEM 331
           +I  Y  +   D  +N++ EM    + P+++TY  L + +   G     W+   + +++
Sbjct: 541 MIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSGSNSYEWKFVNVIRDI 599


>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
          Length = 528

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 140/279 (50%), Gaps = 1/279 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +++  +  FR   +  KA  +  +M   GV+PD   ++ +I      N    A++ F+RM
Sbjct: 231 VFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRM 290

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G +PD +T++++IDA+ + G  + A  L+D  R     +    ++ +I L G    +
Sbjct: 291 REEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRW 350

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           +G   +  EMK  G+ PN+ITY  L+D  GR+ R  +     + M  +GL P+   Y +L
Sbjct: 351 EGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHAL 410

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + AY +    +  L+V + M+  G++ S  + N+L+    +     EAF + + MK +  
Sbjct: 411 VNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKEN-G 469

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            +PD  T+++++       +  +   ++ EM+ +G  P+
Sbjct: 470 LRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPD 508



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 148/315 (46%), Gaps = 1/315 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +  + +    + A  L  +M   GVKP +  FS +++  R      KA      M 
Sbjct: 197 YSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMH 256

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  PD   Y+ MID +G+   +  A   +DR R E    D   ++TLI  +   G  D
Sbjct: 257 ASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHD 316

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + +++EM+         TYN +++ +G  +R   V+ +  EM + GL PN  TY +L+
Sbjct: 317 RAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLV 376

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YGR+   ++ +     MK  G++ S T+Y+ L+   A  G  D A  + + M+ ++  
Sbjct: 377 DVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMR-ADGL 435

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +  +   +S+I       +++EA ++   M E G  P++   T+L++   + ++ + V  
Sbjct: 436 EASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPV 495

Query: 468 ALNRLPELGITPDDR 482
               +   G  PD +
Sbjct: 496 IYEEMITSGCAPDRK 510



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 143/336 (42%), Gaps = 41/336 (12%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           ++PD   FS LIS      LP+ A+E      + G  P +   +++I + G A  V  A 
Sbjct: 84  LEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAE 143

Query: 256 GLYDR---ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            L+     A   K R    A++ L+K Y   G+      V +EM   GV P+  TY+ L+
Sbjct: 144 ALFLEFFLAGEIKPRT--RAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLV 201

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM------ 366
           D   RA R    + + KEM  +G+ P+   ++ +L  +      +   +V REM      
Sbjct: 202 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVR 261

Query: 367 -----------------------------KEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
                                        +E+G++  V  +NTL+      G  D A E+
Sbjct: 262 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIEL 321

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           F++M+ S NC   + T++ MI +     +    EAM  EM E G  PN+   T+L+  YG
Sbjct: 322 FDEMRES-NCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYG 380

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           ++ R  + V  +  +   G+ P       L+N   Q
Sbjct: 381 RSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQ 416



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 149/340 (43%), Gaps = 39/340 (11%)

Query: 178 CRDLDKAERLFDDMLDRG-VKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDA 235
            R + +AE LF +    G +KP    ++ L+    ++ +L N A +  + M   G  PD 
Sbjct: 136 ARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKN-AEQVLDEMSQCGVAPDE 194

Query: 236 LTYSSMIDAYGRAGNVEMA-----------------------FGLYDRARNEKW------ 266
            TYS ++DAY RAG  E A                        G  DR   +K       
Sbjct: 195 ATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLRE 254

Query: 267 ------RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
                 R D + ++ +I  +G        ++ ++ M+  G++P+++T+N L+D   +  R
Sbjct: 255 MHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGR 314

Query: 321 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 380
             +   ++ EM ++       TY  ++   G  +  E   ++  EMKE+G+  ++  Y T
Sbjct: 315 HDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTT 374

Query: 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
           L+ +    G   EA +  E MK ++  +P S  + +++   + RG    A  +   M   
Sbjct: 375 LVDVYGRSGRFKEAVDCIEAMK-ADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRAD 433

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           G E +  VL SLI  +G+ +R  +    L  + E G+ PD
Sbjct: 434 GLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPD 473



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 99/213 (46%), Gaps = 12/213 (5%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW- 222
           +V+ +N  +    K    D+A  LFD+M +        T++ +I      NL  +   W 
Sbjct: 298 DVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMI------NLLGEEQRWE 351

Query: 223 -----FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
                   M   G  P+ +TY++++D YGR+G  + A    +  + +  +     +  L+
Sbjct: 352 GVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALV 411

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             Y   G  D  LNV + M+A G++ + +  N+L++  G  +R  +  ++ + M +NGL 
Sbjct: 412 NAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLR 471

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           P+  TY +L++A  R    E    +Y EM   G
Sbjct: 472 PDVITYTTLMKALIRVEQFEKVPVIYEEMITSG 504



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 91/182 (50%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ + +  + +  +  E +  +M ++G+ P+ +T++TL+     +    +AV+  E M 
Sbjct: 337 YNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMK 396

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  P +  Y ++++AY + G  + A  +    R +         ++LI  +G      
Sbjct: 397 ADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIA 456

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              +V + MK  G++P++ITY  L+  + R ++  +V  IY+EM  +G +P+    A L 
Sbjct: 457 EAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLR 516

Query: 348 RA 349
            A
Sbjct: 517 SA 518



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 110/267 (41%), Gaps = 45/267 (16%)

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +V ++Y    ++ L P+   ++ L+ A+ RAR  +  L                    LL
Sbjct: 71  EVPSMYCGGGESRLEPDAPLFSDLISAFARARLPDAALE-------------------LL 111

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG- 441
           A    +G T                 P S   +++I+      +V+EAEA+F E   AG 
Sbjct: 112 ASAQAIGLT-----------------PRSNAVTALISSLGSARRVAEAEALFLEFFLAGE 154

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
            +P      +L++ Y K     +  + L+ + + G+ PD+     L++  T+  + E  +
Sbjct: 155 IKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESAR 214

Query: 502 -LVECVEKSNSK-LGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK--KAYCNCLIDLC 557
            L++ +E    K   YV   +L      G+++K    L    +  V+  + + N +ID  
Sbjct: 215 ILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTF 274

Query: 558 VNLNLLENAC----KLLELGLTLEVYT 580
              N L +A     ++ E G+  +V T
Sbjct: 275 GKYNCLGHAMDAFDRMREEGIEPDVVT 301


>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g02060, chloroplastic; Flags: Precursor
 gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 171/365 (46%), Gaps = 26/365 (7%)

Query: 91  KEKSYDTRYNSLVKLAADLDSCSATEDDVF-SVLRCLGDDFLEQDCVIILNNMTNPDTAA 149
           + ++ +   N L  +    + C   +D  F S++R  G+  L Q+ V +   M       
Sbjct: 112 RARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTM------- 164

Query: 150 LALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLIS 208
                   ++  S  V+ +N  + +  K      A  LFD+M    GV PD+ TF+TLI+
Sbjct: 165 -------KQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLIN 217

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               N++ ++A   F+ M  + C+PD +TY+++ID   RAG V++A  +      +   +
Sbjct: 218 GFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDV 277

Query: 269 DPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
            PN  +++TL++ Y      D  + V+ +M + G+KPN +TYN L+  +  A R  ++K 
Sbjct: 278 HPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKD 337

Query: 327 IYKEMTD--NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
           I     D     +P+  T+  L++A+  A + +  + V++EM    +      Y+ L+  
Sbjct: 338 ILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRT 397

Query: 385 CADVGYTDEAFEIFEDMKSSE------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
                  D A  +F ++   E       C+P +  ++ M       GK  +AE +F +++
Sbjct: 398 LCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLM 457

Query: 439 EAGFE 443
           + G +
Sbjct: 458 KRGVQ 462



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 137/270 (50%), Gaps = 5/270 (1%)

Query: 201 VTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL--- 257
           ++ +T++   R+  +P   + +F+ + + G      ++  M++  GRA N+ +A      
Sbjct: 66  ISRTTVLQTLRLIKVPADGLRFFDWVSNKGFSHKEQSFFLMLEFLGRARNLNVARNFLFS 125

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
            +R  N   ++    F++LI+ YG AG F   + +++ MK +G+ P+++T+N+LL  + +
Sbjct: 126 IERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLK 185

Query: 318 AKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
             R      ++ EM    G++P+  T+ +L+  + +    ++   ++++M+       V 
Sbjct: 186 RGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVV 245

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
            YNT++      G    A  +   M K + +  P+  ++++++     + ++ EA  +F+
Sbjct: 246 TYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFH 305

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           +ML  G +PN     +LI+   +A R D++
Sbjct: 306 DMLSRGLKPNAVTYNTLIKGLSEAHRYDEI 335



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 139/300 (46%), Gaps = 10/300 (3%)

Query: 154 YFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG---VKPDNVTFSTLISCA 210
           + +NK  + KE   + + ++   + R+L+ A      +  R    VK  +  F++LI   
Sbjct: 90  WVSNKGFSHKEQSFF-LMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSY 148

Query: 211 RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP 270
               L  ++V+ F+ M   G  P  LT++S++    + G   MA  L+D  R   + + P
Sbjct: 149 GNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMR-RTYGVTP 207

Query: 271 NA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           ++  F+TLI  +      D    ++++M+     P+++TYN ++D + RA +      + 
Sbjct: 208 DSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVL 267

Query: 329 KEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
             M      + PN  +Y +L+R Y   +  ++ + V+ +M  +G++ +   YNTL+   +
Sbjct: 268 SGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLS 327

Query: 387 DVGYTDEAFEIFEDMKSS-ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
           +    DE  +I      +     PD+ TF+ +I      G +  A  +F EML     P+
Sbjct: 328 EAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPD 387



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 143/351 (40%), Gaps = 48/351 (13%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV----EWF 223
           +N+ +K       LD A ++F +ML+  + PD+ ++S LI    M N  ++A     E F
Sbjct: 356 FNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELF 415

Query: 224 ERMPSFG---CDPDALTYSSMID---AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           E+    G   C P A  Y+ M +   A G+    E  F    R   ++   DP ++ TLI
Sbjct: 416 EKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVF----RQLMKRGVQDPPSYKTLI 471

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             +   G F     +   M      P++ TY  L+D + +           + M  +   
Sbjct: 472 TGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTLQRMLRSSYL 531

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P   T+ S+L    + ++  ++  +   M EK ++ ++ L   ++ +       ++AF I
Sbjct: 532 PVATTFHSVLAELAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVRLLFSSAQKEKAFLI 591

Query: 398 FEDMKSS--------------ENCQ-PDSWTF-------SSMITICSCRGKV-------- 427
              +  +              EN +  D+ T        S M+ I +C   +        
Sbjct: 592 VRLLYDNGYLVKMEELLGYLCENRKLLDAHTLVLFCLEKSQMVDIDTCNTVIEGLCKHKR 651

Query: 428 -SEAEAMFNEMLEAGFEPNL---FVLTSLIQCYGKAQRTDDVVRALNRLPE 474
            SEA +++NE++E G    L    VL + ++  GK +    V + +  L E
Sbjct: 652 HSEAFSLYNELVELGNHQQLSCHVVLRNALEAAGKWEELQFVSKRMATLRE 702


>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 690

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 167/378 (44%), Gaps = 42/378 (11%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++  YN+ +    K   LD++ ++F DM  +   PD  T++ +I          +++  F
Sbjct: 273 DIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALF 332

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL---- 279
           E M + GC P+ + Y++MI A  ++G V+ A  L+        R  PN F+  I L    
Sbjct: 333 EEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCR--PNEFTYSIILNVLV 390

Query: 280 -YGTAGNFDGCLNVYEEMKAIGVKPNMI-----------------------------TYN 309
             G  G  D  L V  +     +   ++                              Y 
Sbjct: 391 AEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYI 450

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
           ++L+++ R  +  +   +  ++ + G+S +   Y ++L   G+ +       +Y +MK+ 
Sbjct: 451 SMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQD 510

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G    +  YN L++    VG   EA E+FE+++SS+ C+PD  +++S+I      G V E
Sbjct: 511 GPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSD-CKPDIISYNSLINCLGKNGDVDE 569

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           A   F EM + G  P++   ++LI+C+GK  + +      +R+   G  P+      LL+
Sbjct: 570 AHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLD 629

Query: 490 VMTQTPKEELGKLVECVE 507
            +     E  G+  E V+
Sbjct: 630 CL-----ERAGRTAETVD 642



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 99/187 (52%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + ++YN  +    K + +     L++ M   G  PD  T++ LIS         +AVE
Sbjct: 478 STDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVE 537

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            FE + S  C PD ++Y+S+I+  G+ G+V+ A   +   +++    D   +STLI+ +G
Sbjct: 538 VFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFG 597

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                +   ++++ M   G  PN++TYN LLD + RA R  +   +Y ++ + GL+P+  
Sbjct: 598 KTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSI 657

Query: 342 TYASLLR 348
           TYA L R
Sbjct: 658 TYAILDR 664



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 117/249 (46%), Gaps = 1/249 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y   ++   K     +A RLF +M       D   + +++          +A+E   ++
Sbjct: 413 IYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKV 472

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G   D + Y++++   G+   V     LY++ + +    D   ++ LI   G  G  
Sbjct: 473 HEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKV 532

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              + V+EE+++   KP++I+YN+L++ +G+     +    + EM D GL+P+  TY++L
Sbjct: 533 KEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTL 592

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  +G+    E   S++  M  +G   ++  YN LL      G T E  +++  ++  + 
Sbjct: 593 IECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLR-EQG 651

Query: 407 CQPDSWTFS 415
             PDS T++
Sbjct: 652 LTPDSITYA 660



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 140/302 (46%), Gaps = 52/302 (17%)

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYE 294
           T + +I  +    ++E+  GL      +KW +  NA++   L++ +  + + D   NVY 
Sbjct: 209 TVNILIKIFSSNEDLELCTGLI-----KKWDLRLNAYTYRCLLQAHIRSRDSDRAFNVYM 263

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           EM + G + ++  YN LLD + + ++  +   ++K+M     +P+  TY  ++R  G+  
Sbjct: 264 EMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMG 323

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             E++L+++ EM  KG   ++  YNT++   +  G  D+A  +F +M  + NC+P+ +T+
Sbjct: 324 RAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKN-NCRPNEFTY 382

Query: 415 SSMITICSCRGKV--------------------------------SEAEAMFNEM--LEA 440
           S ++ +    G++                                SEA  +F  M     
Sbjct: 383 SIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHD 442

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
           G + + ++  S+++   +  +T + +  L+++ E GI+ D         +M  T    LG
Sbjct: 443 GGDRDAYI--SMLESLCRGGKTVEAIELLSKVHEKGISTD--------TMMYNTVLSTLG 492

Query: 501 KL 502
           KL
Sbjct: 493 KL 494



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/342 (20%), Positives = 151/342 (44%), Gaps = 18/342 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ +K+F    DL+    L        ++ +  T+  L+     +   ++A   +  M S
Sbjct: 211 NILIKIFSSNEDLELCTGLIKKW---DLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWS 267

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G   D   Y+ ++DA  +   ++ ++ ++   + +    D   ++ +I++ G  G  + 
Sbjct: 268 KGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEE 327

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L ++EEM   G  PN+I YN ++  + ++    +   ++  M  N   PN  TY+ +L 
Sbjct: 328 SLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILN 387

Query: 349 ---AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
              A G+    ++ L V  +   K      ++Y  L+   + +G++ EA  +F +M S  
Sbjct: 388 VLVAEGQLGRLDEVLEVSNKFINK------SIYAYLVRTLSKLGHSSEAHRLFCNMWSFH 441

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           +        S + ++C   GK  EA  + +++ E G   +  +  +++   GK ++   +
Sbjct: 442 DGGDRDAYISMLESLCRG-GKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHL 500

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
                ++ + G  PD      L++ + +     +GK+ E VE
Sbjct: 501 HDLYEKMKQDGPFPDIFTYNILISSLGR-----VGKVKEAVE 537



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 61/116 (52%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I YN  +    K  D+D+A   F +M D+G+ PD VT+STLI C    +    A   F
Sbjct: 550 DIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLF 609

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           +RM + GC P+ +TY+ ++D   RAG       LY + R +    D   ++ L +L
Sbjct: 610 DRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITYAILDRL 665


>gi|168000162|ref|XP_001752785.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695948|gb|EDQ82289.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 482

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 154/330 (46%), Gaps = 11/330 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERM 226
           +N+ +  + K      AE  F +M + G++P+   F++L+   AR  N   +A   ++ M
Sbjct: 110 FNLMIAAYGKLGQPGIAELSFTEMREVGLEPNVACFTSLLEAHARTGNFV-RAESIYQEM 168

Query: 227 PSFGCDPDALTYSSMIDAYGRA---GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
              G  P  +TY   I+A  +A    + E  F   D +   K   D   ++ ++  YG A
Sbjct: 169 LKTGPAPTEVTYQVYINALCKAERFNDAERIFKCLDESAEAK--PDARLYNLMLHTYGKA 226

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G F     ++ +MK  GV   ++T+N+L   M   K     +   + M    + P+  TY
Sbjct: 227 GKFSEQQALFRQMKGAGVPMTVVTFNSL---MAFQKTVADAEACLRHMQAAKIKPDVITY 283

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             L+ AY +AR  E+   V+REM   G++ S   YNTLL   A     + A  +F+ M  
Sbjct: 284 TGLINAYSKARRVEEAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVEGAESLFKSM-G 342

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            + C+PD  ++++++   +  G + +AE +   M +AG EPN+    +L+Q Y      +
Sbjct: 343 QDRCRPDIRSYTTLLAAYANTGNMKKAERLLKRMKQAGLEPNVVTYGTLMQGYTSVHDIN 402

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
            +++    L + GI P+      L+    Q
Sbjct: 403 AMLQTFEDLQKAGIKPNSTIFTLLVRTFGQ 432



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 168/362 (46%), Gaps = 7/362 (1%)

Query: 140 NNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD 199
             +  P  A L+ T    ++     V  +   ++   +  +  +AE ++ +ML  G  P 
Sbjct: 118 GKLGQPGIAELSFTEM-REVGLEPNVACFTSLLEAHARTGNFVRAESIYQEMLKTGPAPT 176

Query: 200 NVTFSTLISCARMNNLPNKAVEWFERM-PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
            VT+   I+        N A   F+ +  S    PDA  Y+ M+  YG+AG       L+
Sbjct: 177 EVTYQVYINALCKAERFNDAERIFKCLDESAEAKPDARLYNLMLHTYGKAGKFSEQQALF 236

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
            + +     +    F++L+    T  + + CL     M+A  +KP++ITY  L++   +A
Sbjct: 237 RQMKGAGVPMTVVTFNSLMAFQKTVADAEACLR---HMQAAKIKPDVITYTGLINAYSKA 293

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
           +R  +   +++EM  +GL P+   Y +LL AY + +  E   S+++ M +   +  +  Y
Sbjct: 294 RRVEEAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVEGAESLFKSMGQDRCRPDIRSY 353

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
            TLLA  A+ G   +A  + + MK +   +P+  T+ +++   +    ++     F ++ 
Sbjct: 354 TTLLAAYANTGNMKKAERLLKRMKQA-GLEPNVVTYGTLMQGYTSVHDINAMLQTFEDLQ 412

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV-MTQTPKE 497
           +AG +PN  + T L++ +G+ +  +  +    ++ + G   D R    L++   T   K+
Sbjct: 413 KAGIKPNSTIFTLLVRTFGQQEDFESALSWFKKMLDSGCPADQRSRAALMDACQTSEQKQ 472

Query: 498 EL 499
           E+
Sbjct: 473 EV 474



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 125/260 (48%), Gaps = 9/260 (3%)

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEE 295
           ++ MI AYG+ G   +A   +   R     ++PN   F++L++ +   GNF    ++Y+E
Sbjct: 110 FNLMIAAYGKLGQPGIAELSFTEMREVG--LEPNVACFTSLLEAHARTGNFVRAESIYQE 167

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRAR 354
           M   G  P  +TY   ++ + +A+R    + I+K + ++    P+   Y  +L  YG+A 
Sbjct: 168 MLKTGPAPTEVTYQVYINALCKAERFNDAERIFKCLDESAEAKPDARLYNLMLHTYGKAG 227

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
              +  +++R+MK  G+ ++V  +N+L+A    V    +A      M++++  +PD  T+
Sbjct: 228 KFSEQQALFRQMKGAGVPMTVVTFNSLMAFQKTVA---DAEACLRHMQAAK-IKPDVITY 283

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + +I   S   +V EA  +F EM+ +G  P+     +L+  Y K +  +        + +
Sbjct: 284 TGLINAYSKARRVEEAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVEGAESLFKSMGQ 343

Query: 475 LGITPDDRFCGCLLNVMTQT 494
               PD R    LL     T
Sbjct: 344 DRCRPDIRSYTTLLAAYANT 363



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 102/234 (43%), Gaps = 3/234 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ +N  M   +   D   AE     M    +KPD +T++ LI+         +A   F 
Sbjct: 248 VVTFNSLMAFQKTVAD---AEACLRHMQAAKIKPDVITYTGLINAYSKARRVEEAHVVFR 304

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M + G  P  + Y++++DAY +   VE A  L+     ++ R D  +++TL+  Y   G
Sbjct: 305 EMVASGLRPSRIAYNTLLDAYAKCKEVEGAESLFKSMGQDRCRPDIRSYTTLLAAYANTG 364

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N      + + MK  G++PN++TY  L+           +   ++++   G+ PN   + 
Sbjct: 365 NMKKAERLLKRMKQAGLEPNVVTYGTLMQGYTSVHDINAMLQTFEDLQKAGIKPNSTIFT 424

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
            L+R +G+    E  LS +++M + G          L+  C       E  E F
Sbjct: 425 LLVRTFGQQEDFESALSWFKKMLDSGCPADQRSRAALMDACQTSEQKQEVLEYF 478



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 102/206 (49%), Gaps = 4/206 (1%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K   +VI Y   +  + K R +++A  +F +M+  G++P  + ++TL+           A
Sbjct: 275 KIKPDVITYTGLINAYSKARRVEEAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVEGA 334

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLI 277
              F+ M    C PD  +Y++++ AY   GN++ A  L  R +     ++PN   + TL+
Sbjct: 335 ESLFKSMGQDRCRPDIRSYTTLLAAYANTGNMKKAERLLKRMKQAG--LEPNVVTYGTLM 392

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           + Y +  + +  L  +E+++  G+KPN   +  L+ T G+ +      + +K+M D+G  
Sbjct: 393 QGYTSVHDINAMLQTFEDLQKAGIKPNSTIFTLLVRTFGQQEDFESALSWFKKMLDSGCP 452

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVY 363
            +  + A+L+ A   +   ++ L  +
Sbjct: 453 ADQRSRAALMDACQTSEQKQEVLEYF 478


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 161/363 (44%), Gaps = 36/363 (9%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  V+ YN  +  F K  ++DKA  LF +M+ +G+ PD VT+++LI         +KAV 
Sbjct: 197 SPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVA 256

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + M   G  PD  TY+ MI  Y   G +E A  L  +      + D   +S LI+ Y 
Sbjct: 257 ILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYC 316

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G      +V++ M   G KPN   Y+ LL           V+ +   M  +G+     
Sbjct: 317 KIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHR 376

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            +  L+ AY +    +  ++ + EM++ G++  V  Y+T++ +    G  ++A   F  M
Sbjct: 377 AFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQM 436

Query: 402 KSSENCQPDSWTFSSMIT-ICS---------------------------------CR-GK 426
             SE   P+  +F+S+I  +CS                                 C+ G+
Sbjct: 437 -VSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGR 495

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
           V EA+  F+ ++  G +P++    +LI  Y    + D+ ++ L+R+  +G+ PD      
Sbjct: 496 VVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNS 555

Query: 487 LLN 489
           LLN
Sbjct: 556 LLN 558



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 168/360 (46%), Gaps = 11/360 (3%)

Query: 147 TAALALTYFTNKLKASKEVI--LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFS 204
           +AALA++ F   +++   ++  +  + ++ F     LD A   F   L  G +  NVT +
Sbjct: 71  SAALAVSLFNTMVRSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLN 130

Query: 205 TLISCARMNNLPNKAVEW-FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL-YDRAR 262
            LI      N  + A++  F RMP  G  PD  +Y+++I         + A  L      
Sbjct: 131 QLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTA 190

Query: 263 NEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
           +  +   PN  +++T+I  +   G  D    ++ EM   G+ P+++TYN+L+D + +A+ 
Sbjct: 191 DGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQA 250

Query: 321 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 380
             +   I + M D G+ P+  TY  ++R Y      E+ + + ++M   G+Q  V  Y+ 
Sbjct: 251 MDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSL 310

Query: 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
           L+     +G   EA  +F+ M   +  +P+S  +  ++   + +G + +   + + M+  
Sbjct: 311 LIQYYCKIGRCAEARSVFDSM-VRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRD 369

Query: 441 G--FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
           G  FE   F +  LI  Y K    D  + A   + + G+ PD      +++++ +T + E
Sbjct: 370 GIPFEHRAFNI--LICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVE 427



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 160/365 (43%), Gaps = 52/365 (14%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG---CDPDALTY 238
           D  + +F  M + G  PD  +++ LI    +     +A+E    M + G   C P+ ++Y
Sbjct: 144 DAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSY 203

Query: 239 SSMIDAYGRAGNVEMAFGLYD------------------------RARNEKWRI------ 268
           +++ID + + G V+ A+ L+                         +A ++   I      
Sbjct: 204 NTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFD 263

Query: 269 -----DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
                D   ++ +I+ Y + G  +  + + ++M   G++P+++TY+ L+    +  R  +
Sbjct: 264 KGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAE 323

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
            ++++  M   G  PN   Y  LL  Y       D   +   M   G+      +N L+ 
Sbjct: 324 ARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILIC 383

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
             A  G  D+A   F +M+ +   +PD  ++S++I I    G+V +A   FN+M+  G  
Sbjct: 384 AYAKHGAVDKAMTAFTEMRQN-GLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLS 442

Query: 444 PNLFVLTSLIQ---CYGKAQRTDDVV-RALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 499
           PN+   TSLI      G+ ++ +++    +NR    GI PD  F      +M    KE  
Sbjct: 443 PNIISFTSLIHGLCSIGEWKKVEELAFEMINR----GIHPDAIFMN---TIMDNLCKE-- 493

Query: 500 GKLVE 504
           G++VE
Sbjct: 494 GRVVE 498



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 125/274 (45%), Gaps = 36/274 (13%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           K E L  +M++RG+ PD +  +T++          +A ++F+ +   G  PD ++Y+++I
Sbjct: 463 KVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLI 522

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
           D Y   G ++ +    DR  +   R D   +++L+  Y   G  +  L +Y EM    VK
Sbjct: 523 DGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVK 582

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
              IT N +L  + +A R    + +Y +M D                             
Sbjct: 583 FCAITSNIMLHGLFQAGRIVAARELYMKMVD----------------------------- 613

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
                 +G QL +  YNT+L    +    DEA  +FED++S E  + D  TFS +I    
Sbjct: 614 ------RGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKE-FELDVRTFSIVINALL 666

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
             G++ EA+++F+ M+  G  P++   + +I+ +
Sbjct: 667 KVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSH 700



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 132/305 (43%), Gaps = 39/305 (12%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I  N  M    K   + +A+  FD ++  GVKPD V+++TLI         +++++  
Sbjct: 479 DAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQL 538

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           +RM S G  PD+ TY+S+++ Y + G VE A  LY     E +R D              
Sbjct: 539 DRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALY----REMFRKD-------------- 580

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                            VK   IT N +L  + +A R    + +Y +M D G      TY
Sbjct: 581 -----------------VKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETY 623

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            ++L         ++ L ++ +++ K  +L V  ++ ++     VG  DEA  +F  M  
Sbjct: 624 NTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAM-V 682

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                PD  T+S MI      G + E++ +F  M + G   +  +L  +++   +     
Sbjct: 683 LRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVR---RLLEKG 739

Query: 464 DVVRA 468
           DV RA
Sbjct: 740 DVRRA 744


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 155/323 (47%), Gaps = 11/323 (3%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++Y + +  F +   + +A R+ D+M+  G  PD VT++TL++     +    A +    
Sbjct: 333 VIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNE 392

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  PD  T++++I  Y R GN E A  L+D    ++ R D   +++LI      G+
Sbjct: 393 MEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGD 452

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 ++++M A  + PN ITY+ L+D+     +         EM   G  PN  TY S
Sbjct: 453 LAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNS 512

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE-----AFEIFED 400
           +++ Y R+   +      ++M++  +   +  +NTL+      GY  E     AF +F  
Sbjct: 513 IIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIH-----GYIKEENMHGAFNVFNI 567

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M+  E  +PD+ T++ +I   S +G + +A  +F  M ++G EP+ +   SLI  +  A 
Sbjct: 568 MEK-EMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAG 626

Query: 461 RTDDVVRALNRLPELGITPDDRF 483
            +    +  + +   G  PDD+F
Sbjct: 627 NSKQAFQLHDEMIHRGFAPDDKF 649



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 162/353 (45%), Gaps = 38/353 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +NV +    +  D+D A  L D M +RG+KP  VT+++++     +   +KA E F
Sbjct: 191 DVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVF 250

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M      PD  +++ +I  + R G V+ A   Y   ++     D  +FS LI L+   
Sbjct: 251 RTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRR 310

Query: 284 GNFDG-----------------------------------CLNVYEEMKAIGVKPNMITY 308
           G  D                                     L V +EM   G  P+++TY
Sbjct: 311 GEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTY 370

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N LL+ + +  R    + +  EM + G++P+  T+ +L+  Y R    E+ L ++  +  
Sbjct: 371 NTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLR 430

Query: 369 KGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
           + ++  V  YN+L+  MC   G   +A E+++DM + E   P+  T+S +I     +G+V
Sbjct: 431 QRLRPDVVTYNSLIDGMCRK-GDLAKANELWDDMHARE-ILPNHITYSILIDSHCEKGQV 488

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +A    +EM++ G  PN+    S+I+ Y ++       + L ++ +  + PD
Sbjct: 489 EDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPD 541



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 146/320 (45%), Gaps = 1/320 (0%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
            + +V+ ++  + +F +  ++D A     +M   G+ PD V ++ +I         ++A+
Sbjct: 293 VTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEAL 352

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
              + M  FGC PD +TY+++++   +   +  A  L +         D   F+TLI  Y
Sbjct: 353 RVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGY 412

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              GNF+  L +++ +    ++P+++TYN+L+D M R     +   ++ +M    + PN 
Sbjct: 413 CRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNH 472

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY+ L+ ++      ED      EM +KG   ++  YN+++      G   +  +  + 
Sbjct: 473 ITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQK 532

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M+  +N  PD  TF+++I        +  A  +FN M +    P+      +I  + +  
Sbjct: 533 MRQ-DNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQG 591

Query: 461 RTDDVVRALNRLPELGITPD 480
              D  R    + + GI PD
Sbjct: 592 NMQDAGRVFKGMGDSGIEPD 611



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 2/222 (0%)

Query: 151 ALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL  F   L+     +V+ YN  +    +  DL KA  L+DDM  R + P+++T+S LI 
Sbjct: 421 ALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILID 480

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                     A  + + M   G  P+  TY+S+I  Y R+GNV+       + R +    
Sbjct: 481 SHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFP 540

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   F+TLI  Y    N  G  NV+  M+   V+P+ +TYN +++             ++
Sbjct: 541 DLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVF 600

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           K M D+G+ P+  TY SL+  +  A   +    ++ EM  +G
Sbjct: 601 KGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRG 642



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 167/392 (42%), Gaps = 14/392 (3%)

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           P    F  LI     +  P +A E F  +        A   ++++    RAG   +A   
Sbjct: 85  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEA 144

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
           Y    +    ++    + ++  Y     FDG   V  EM+   V P+++T+N L+D   R
Sbjct: 145 YRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFR 204

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
           A        +   M + GL P   TY S+L+   + R  +    V+R M +  +   V  
Sbjct: 205 AGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRS 264

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           +N L+     VG   EA + +++M+      PD  +FS +I + S RG++  A A   EM
Sbjct: 265 FNILIGGFCRVGEVKEAVKFYKEMQ-HRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREM 323

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK- 496
              G  P+  + T +I  + +A    + +R  + +   G  PD      LLN + +  + 
Sbjct: 324 KGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRL 383

Query: 497 ---EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCL 553
              E+L  L E  E+  +        L+     +G+F+  A +LF+++ +   +      
Sbjct: 384 LDAEKL--LNEMEERGVTPDLCTFTTLIHGYCRQGNFEN-ALQLFDTLLRQRLRP----- 435

Query: 554 IDLCVNLNLLENACKLLELGLTLEVYTDIQSR 585
            D+    +L++  C+  +L    E++ D+ +R
Sbjct: 436 -DVVTYNSLIDGMCRKGDLAKANELWDDMHAR 466


>gi|357159762|ref|XP_003578551.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Brachypodium distachyon]
          Length = 534

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 151/330 (45%), Gaps = 13/330 (3%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           LY   M +  K      A  L D+M  R +   +     LI       + ++A + F  M
Sbjct: 136 LYASMMDLLAKHHHFPLARHLLDEMRKRSIPISSQVILALIRRYVRAGMSSEASDLFRSM 195

Query: 227 PSFGCD-PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
             +G   PD    +S++ A  +      A  L+D  ++  +  D   ++TL+  +  +G 
Sbjct: 196 EEYGGGVPDPAVLASLLGALSKKRLASEAQALFDSYKS-VFTPDVVLYTTLVHAWCRSGC 254

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D    V+ EM+  G+ PN+ TY  ++D M RA +  + + +  +M D+G  PN  T+ +
Sbjct: 255 LDKAEQVFAEMQQAGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNA 314

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT--DEAFEIFEDMKS 403
           ++RA+ +A   E  L V+ +M++ G    +  YN L+      G +  D A ++   M  
Sbjct: 315 IMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSNLDAAMKLLLKM-I 373

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           ++ C PD  TF+ M+ +    G V  A  ++  M E   +PN+     L++ +GK +  D
Sbjct: 374 AKGCTPDCHTFNPMLKLVVVLGNVDAAHKLYERMQELQCKPNVITYNLLMKLFGKDKSMD 433

Query: 464 DVVRALNRLPELGITPD--------DRFCG 485
            V+R    +   G+ P+        + FCG
Sbjct: 434 MVLRIKKDMDAQGVEPNVNTYGALIETFCG 463



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 116/241 (48%), Gaps = 5/241 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  Y   +    +   + +A+ L   M+D G  P+  TF+ ++          + ++   
Sbjct: 274 VYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHN 333

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAG--NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           +M   GCDPD +TY+ +++ +   G  N++ A  L  +   +    D + F+ ++KL   
Sbjct: 334 QMRQLGCDPDIITYNFLMETHCGKGQSNLDAAMKLLLKMIAKGCTPDCHTFNPMLKLVVV 393

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            GN D    +YE M+ +  KPN+ITYN L+   G+ K    V  I K+M   G+ PN NT
Sbjct: 394 LGNVDAAHKLYERMQELQCKPNVITYNLLMKLFGKDKSMDMVLRIKKDMDAQGVEPNVNT 453

Query: 343 YASLLRAY-GRARYGEDTLSVYREMKE-KGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
           Y +L+  + GR  + +   +  REM E K ++    +Y+ +L +    G   +  E+ E 
Sbjct: 454 YGALIETFCGRGNW-KRAYATLREMLEVKSLKPKKPVYDMVLVLLRKAGQLRKHEELVEL 512

Query: 401 M 401
           M
Sbjct: 513 M 513



 Score = 42.4 bits (98), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 136 VIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           V++L N+     AA  L     +L+    VI YN+ MK+F K + +D   R+  DM  +G
Sbjct: 391 VVVLGNVD----AAHKLYERMQELQCKPNVITYNLLMKLFGKDKSMDMVLRIKKDMDAQG 446

Query: 196 VKPDNVTFSTLIS--CARMN 213
           V+P+  T+  LI   C R N
Sbjct: 447 VEPNVNTYGALIETFCGRGN 466


>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 163/367 (44%), Gaps = 24/367 (6%)

Query: 138 ILNNMTNPDTAALALTYF-----TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDML 192
           +L  +       LAL +F     +N  K +   + + V ++       +D  + L   M 
Sbjct: 45  VLKRLRQESCVPLALHFFKSIANSNLFKHTP--LTFEVMIRKLAMDGQVDSVQYLLQQMK 102

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
            +G       F ++IS  R   L  +AVE F R+  FGCDP    Y+ ++D       ++
Sbjct: 103 LQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQ 162

Query: 253 MAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
           M + +Y   + + +  +PN F+   L+K        DG   +  EM   G  PN ++Y  
Sbjct: 163 MIYMVYRDMKRDGF--EPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTT 220

Query: 311 LLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           ++ +M   G  K   Q+   ++        P  + Y +L+    + R  +  + +  EM 
Sbjct: 221 VISSMCEVGMVKEGRQLAERFE--------PVVSVYNALINGLCKERDYKGGVELMSEMV 272

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
           EKG+  +V  Y+TL+   ++ G  + AF +   M     C P+  T SS++  C  RG  
Sbjct: 273 EKGISPNVISYSTLINELSNSGQIELAFSLLAQM-LKRGCHPNIHTLSSLVKGCFVRGTT 331

Query: 428 SEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            +A  M+N+M+   G +PN+    +L+Q +      D  V     + E+G +P+ R  G 
Sbjct: 332 FDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGS 391

Query: 487 LLNVMTQ 493
           L+N  T+
Sbjct: 392 LINGFTK 398



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 147/319 (46%), Gaps = 3/319 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V +YN  +    K RD      L  +M+++G+ P+ +++STLI+    +     A     
Sbjct: 245 VSVYNALINGLCKERDYKGGVELMSEMVEKGISPNVISYSTLINELSNSGQIELAFSLLA 304

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGT 282
           +M   GC P+  T SS++      G    A  ++++     + + PN  A++TL++ + +
Sbjct: 305 QMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQMI-RGFGLQPNVVAYNTLVQGFCS 363

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            GN D  ++V+  M+ IG  PN+ TY +L++   +         I+ +M  +G  PN   
Sbjct: 364 HGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVV 423

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y S++ A  R    ++  S+   M ++    SV  +N  +    D G  D A ++F  M+
Sbjct: 424 YTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQME 483

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
               C P+  T++ ++   +   ++ EA  +  E+   G E +     +L+     A   
Sbjct: 484 QQYRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSTSTYNTLLHGSCNAGLP 543

Query: 463 DDVVRALNRLPELGITPDD 481
              ++ + ++   G +PD+
Sbjct: 544 GIALQLVGKMMVNGKSPDE 562



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 139/308 (45%), Gaps = 13/308 (4%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  ++ F    ++DKA  +F  M + G  P+  T+ +LI+          AV  + 
Sbjct: 351 VVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWN 410

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M + GC P+ + Y+SM++A  R    + A  L +    E        F+  IK    AG
Sbjct: 411 KMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAG 470

Query: 285 NFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
             D    V+ +M +     PN++TYN LLD + +A R  +   + +E+   G+  + +TY
Sbjct: 471 RLDWAEKVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSTSTY 530

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
            +LL     A      L +  +M   G     +T+   +LA C   G  + A ++ + + 
Sbjct: 531 NTLLHGSCNAGLPGIALQLVGKMMVNGKSPDEITMNMIILAYCKQ-GKAERAVQMLDLVS 589

Query: 403 -SSENCQPDSWTFSSMI-TIC--SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
                 +PD  +++++I  +C  +CR    +   +F  M+     P   +L S+ Q   +
Sbjct: 590 CGRRKWRPDVISYTNVIWGLCRSNCR---EDGVILFERMISERIIP---ILRSVCQEAAR 643

Query: 459 AQRTDDVV 466
               +DV+
Sbjct: 644 MTIPNDVL 651



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 2/134 (1%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A         + +    ++ YN  +    K   +++A  L  ++  RGV+    T++T
Sbjct: 473 DWAEKVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSTSTYNT 532

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR--N 263
           L+  +    LP  A++   +M   G  PD +T + +I AY + G  E A  + D      
Sbjct: 533 LLHGSCNAGLPGIALQLVGKMMVNGKSPDEITMNMIILAYCKQGKAERAVQMLDLVSCGR 592

Query: 264 EKWRIDPNAFSTLI 277
            KWR D  +++ +I
Sbjct: 593 RKWRPDVISYTNVI 606


>gi|255583688|ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527686|gb|EEF29795.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 553

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 153/318 (48%), Gaps = 7/318 (2%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           + K  +   AE++   M   G  P+ V+ + L+         N A   F RM S G  P 
Sbjct: 150 YGKQGNFSAAEKVLSYMNKMGYVPNVVSHTALMEAYGRGARYNNAEAIFRRMQSSGPKPS 209

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEK---WRIDPNAFSTLIKLYGTAGNFDGCLN 291
           A+TY  ++  +      + A  +++   +E+    + D   F  +I ++  AGN++    
Sbjct: 210 AVTYQIILKNFVEGNKFKEAEEVFETLLDEEKSPLKPDQKMFHMMIYMHRKAGNYEKARQ 269

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           ++  M   GV  + +TYN+L+      K   +V  IY +M  +GL P+  +YA L+ AYG
Sbjct: 270 IFALMTQRGVPKSTVTYNSLMSFETNYK---EVSKIYDQMQRSGLQPDVISYALLINAYG 326

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           +AR  ++ L+V+ EM + G++ +   YN LL   A  G  ++A  +F+ M+  +   PD 
Sbjct: 327 KARREDEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQARTVFKSMRR-DRYTPDL 385

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            ++++M++       ++ AE  FN + + G EPN+    +LI+ Y K    D ++     
Sbjct: 386 CSYTTMLSAYVNASDMAGAENFFNRLKQDGLEPNVVTYGALIKGYAKTNNLDKMMEKYEE 445

Query: 472 LPELGITPDDRFCGCLLN 489
           +   G+  +      +++
Sbjct: 446 MQLRGVKANQTIFTTIMD 463



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 168/382 (43%), Gaps = 12/382 (3%)

Query: 129 DFLEQDCVIIL---NNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAE 185
           DF E D ++++       N   A   L+Y  NK+     V+ +   M+ + +    + AE
Sbjct: 137 DFNEMDSLMLITAYGKQGNFSAAEKVLSYM-NKMGYVPNVVSHTALMEAYGRGARYNNAE 195

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM---PSFGCDPDALTYSSMI 242
            +F  M   G KP  VT+  ++      N   +A E FE +         PD   +  MI
Sbjct: 196 AIFRRMQSSGPKPSAVTYQIILKNFVEGNKFKEAEEVFETLLDEEKSPLKPDQKMFHMMI 255

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
             + +AGN E A  ++        R  P +  T   L     N+     +Y++M+  G++
Sbjct: 256 YMHRKAGNYEKARQIFALMTQ---RGVPKSTVTYNSLMSFETNYKEVSKIYDQMQRSGLQ 312

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P++I+Y  L++  G+A+R  +   +++EM D G+ P    Y  LL A+  +   E   +V
Sbjct: 313 PDVISYALLINAYGKARREDEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQARTV 372

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
           ++ M+       +  Y T+L+   +      A   F  +K  +  +P+  T+ ++I   +
Sbjct: 373 FKSMRRDRYTPDLCSYTTMLSAYVNASDMAGAENFFNRLK-QDGLEPNVVTYGALIKGYA 431

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
               + +    + EM   G + N  + T+++  YGK +     V     + + G+ PD +
Sbjct: 432 KTNNLDKMMEKYEEMQLRGVKANQTIFTTIMDAYGKNKDFGSAVIWYKEMEQYGVPPDQK 491

Query: 483 FCGCLLNVM-TQTPKEELGKLV 503
               LL++  T   ++E  ++V
Sbjct: 492 AKNILLSLAKTADEQKEANQMV 513


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 145/296 (48%), Gaps = 6/296 (2%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V  + + ++ F K     +     D ML+ G+ P+ + ++ LISC     +  +A  
Sbjct: 26  SPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLCKAGMLAEAES 85

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
           + +RMP   C P+ ++Y+ +ID Y +A N+E A               P+A+S++++ + 
Sbjct: 86  YLKRMPQH-CAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFC 144

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             GN    ++V+ EM A G +P+++ +N LL  + RA++  + + +++ M   G  P+  
Sbjct: 145 KTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVV 204

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +++    + +  ++ + +   MK++ +  +   Y TL+          +A+E+FE M
Sbjct: 205 TYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKM 264

Query: 402 KSSENCQPDSWTFSSMITI---CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
                C      +S +I I   C  R +  EA+ MF EM   G  P +    +L++
Sbjct: 265 AEGP-CPCTEPAYSVLILINGLCKAR-RPGEAKEMFQEMRGRGISPTVVTYNTLLE 318



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 152/313 (48%), Gaps = 6/313 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ +NV +    + R + +A  LF  M  RG KPD VT++T+I+        ++AV   
Sbjct: 167 DIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLL 226

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG-- 281
           ERM      P  +TY+++ID   +   ++ A+ ++++           A+S LI + G  
Sbjct: 227 ERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLC 286

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A        +++EM+  G+ P ++TYN LL+ +    +      +   M D   +PN  
Sbjct: 287 KARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMF 346

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY  L+ +  +    E+   +   M++KG   S+ ++  LL+  A  G  D+AFE++++M
Sbjct: 347 TYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEM 406

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ--CY-GK 458
            S  NCQ    + + ++     RG V EA+    +M + G  P+ F    L+   C+ GK
Sbjct: 407 -SRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGK 465

Query: 459 AQRTDDVVRALNR 471
           A +   +V  L R
Sbjct: 466 ADQARKLVEELVR 478



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 145/303 (47%), Gaps = 5/303 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWF 223
           V+ YN+ +  + K R+++KA     +M + G  P    +S+++ S  +  N+ +KA++ F
Sbjct: 98  VVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNV-SKAMDVF 156

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             MP+ GC+PD + ++ ++    RA  +  A  L+    +   + D   ++T+I      
Sbjct: 157 AEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKW 216

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D  + + E MK   V P  +TY  L+D + +  R  Q   ++++M +         Y
Sbjct: 217 KKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAY 276

Query: 344 ASLLRAYG--RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           + L+   G  +AR   +   +++EM+ +G+  +V  YNTLL          +A E+   M
Sbjct: 277 SVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFM 336

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
              +   P+ +T+  +I+      +V EA  + + M + GF P+L +   L+    +A R
Sbjct: 337 -LDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGR 395

Query: 462 TDD 464
            DD
Sbjct: 396 LDD 398



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 111/229 (48%), Gaps = 2/229 (0%)

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
           V  A  + +  +   +  D  +   LI+ +  +G+F    +  + M   G+ PN I YNN
Sbjct: 10  VAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNN 69

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L+  + +A    + ++  K M  +  +PN  +Y  ++  Y +AR  E  L+  REM+E G
Sbjct: 70  LISCLCKAGMLAEAESYLKRMPQH-CAPNVVSYNIIIDGYCKARNIEKALAFLREMEELG 128

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
              +   Y++++      G   +A ++F +M  ++ C+PD   F+ +++      K+ EA
Sbjct: 129 HPPTPHAYSSIVQSFCKTGNVSKAMDVFAEM-PAKGCEPDIVNFNVLLSGLWRARKIHEA 187

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             +F  M   G +P++    ++I    K ++ D+ V  L R+ +  ++P
Sbjct: 188 RELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSP 236



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 113/263 (42%), Gaps = 6/263 (2%)

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA- 272
           +L  +A    E M   G  PD  ++  +I  + ++G+ +      DR       + PNA 
Sbjct: 8   DLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAG--LFPNAI 65

Query: 273 -FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
            ++ LI     AG      +  + M      PN+++YN ++D   +A+   +     +EM
Sbjct: 66  LYNNLISCLCKAGMLAEAESYLKRMPQ-HCAPNVVSYNIIIDGYCKARNIEKALAFLREM 124

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
            + G  P  + Y+S+++++ +       + V+ EM  KG +  +  +N LL+        
Sbjct: 125 EELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKI 184

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
            EA E+F  M +S  C+PD  T+++MI       K+ EA  +   M +    P     T+
Sbjct: 185 HEARELFRSM-NSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTT 243

Query: 452 LIQCYGKAQRTDDVVRALNRLPE 474
           LI    K  R         ++ E
Sbjct: 244 LIDHLCKFARLQQAYEVFEKMAE 266



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 4/159 (2%)

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           Q + I +EM   G SP+  ++  L+R + ++   +   S    M E G+  +  LYN L+
Sbjct: 12  QAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLI 71

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAG 441
           +     G   EA    + M   ++C P+  +++ +I   C  R  + +A A   EM E G
Sbjct: 72  SCLCKAGMLAEAESYLKRM--PQHCAPNVVSYNIIIDGYCKARN-IEKALAFLREMEELG 128

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             P     +S++Q + K       +     +P  G  PD
Sbjct: 129 HPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPD 167


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 144/316 (45%), Gaps = 36/316 (11%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++YN  +  F    +LD A    D+ML +G+ P   T+++LI    M    ++A    + 
Sbjct: 327 VIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKE 386

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +   G  PDA+TY+ +I+ Y R  N + AF L+D                          
Sbjct: 387 IQEKGISPDAITYNILINGYCRCANAKKAFLLHD-------------------------- 420

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                    EM A G+KP   TY +LL  + +  R  +   ++K++T  G+ P+   + +
Sbjct: 421 ---------EMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNA 471

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  +      +    + ++M    +      +NT++      G  +EA E+F++MK   
Sbjct: 472 LIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKR-R 530

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +PD  +F+++I+  S RG + +A  + NEML+ GF P +    +L+Q   K Q  D  
Sbjct: 531 GIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLA 590

Query: 466 VRALNRLPELGITPDD 481
              L  +   G+TPDD
Sbjct: 591 EELLKEMVSKGMTPDD 606



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 154/357 (43%), Gaps = 36/357 (10%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           +L+    V  +N+ + V  K   L KA+     M   GVKP+ VT++T++     +    
Sbjct: 214 RLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVE 273

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
            A      M     +PD+ TY S+I    + G +E A  +++    +  R     ++TLI
Sbjct: 274 AADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLI 333

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             +   GN D      +EM   G+ P M TYN+L+  +   +R  + + + KE+ + G+S
Sbjct: 334 DGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGIS 393

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P+  TY  L+  Y R    +    ++ EM   G++ +   Y +LL + +      EA ++
Sbjct: 394 PDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDL 453

Query: 398 FEDMKSSENCQPDSWTFSSMI-TICS---------------------------------C 423
           F+ + +SE   PD   F+++I   CS                                 C
Sbjct: 454 FKKI-TSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHC 512

Query: 424 R-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           R GKV EA  +F+EM   G +P+     +LI  Y +     D  R  N + + G  P
Sbjct: 513 REGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNP 569



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 147/314 (46%), Gaps = 3/314 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  + +F K    + A  L+ +M    +K    TF+ +I+         KA ++   M +
Sbjct: 190 NSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMET 249

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  P+ +TY++++  Y  +G VE A  +    + +K   D   + +LI      G  + 
Sbjct: 250 SGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEE 309

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK-EMTDNGLSPNWNTYASLL 347
              ++EEM   G++P+ + YN L+D     K    + + YK EM   G+SP  +TY SL+
Sbjct: 310 ASKIFEEMVQKGLRPSAVIYNTLIDGFCN-KGNLDMASAYKDEMLKKGISPTMSTYNSLI 368

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A    +  ++   + +E++EKG+      YN L+          +AF + ++M +S   
Sbjct: 369 HALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLAS-GI 427

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P   T++S++ + S + ++ EA+ +F ++   G  P++ +  +LI  +           
Sbjct: 428 KPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFE 487

Query: 468 ALNRLPELGITPDD 481
            L  +  + + PD+
Sbjct: 488 LLKDMDRMKVPPDE 501



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 116/232 (50%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + I YN+ +  + +C +  KA  L D+ML  G+KP   T+++L+      N   +A +
Sbjct: 393 SPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADD 452

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F+++ S G  PD + ++++ID +    NV+ AF L       K   D   F+T+++ + 
Sbjct: 453 LFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHC 512

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G  +    +++EMK  G+KP+ I++N L+    R         +  EM D G +P   
Sbjct: 513 REGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVL 572

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
           TY +L++   + + G+    + +EM  KGM    T Y TL+   A V   DE
Sbjct: 573 TYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDE 624



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 128/302 (42%), Gaps = 3/302 (0%)

Query: 193 DRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
           DR     ++ F  LI SC  MN   ++A E F  M   G  P   T +S++  + +    
Sbjct: 144 DRLGFKSSIVFDYLIKSCCDMNR-ADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRT 202

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           E A+ LY      + +     F+ +I +    G      +    M+  GVKPN++TYN +
Sbjct: 203 EAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTI 262

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +     + R      I   M    + P+  TY SL+    +    E+   ++ EM +KG+
Sbjct: 263 VHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGL 322

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
           + S  +YNTL+    + G  D A   ++D    +   P   T++S+I       +  EAE
Sbjct: 323 RPSAVIYNTLIDGFCNKGNLDMA-SAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAE 381

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            M  E+ E G  P+      LI  Y +           + +   GI P  +    LL+V+
Sbjct: 382 CMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVL 441

Query: 492 TQ 493
           ++
Sbjct: 442 SK 443



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 71/150 (47%), Gaps = 2/150 (1%)

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            ++    +  MKEKG+  ++   N+LL++   +  T+ A+ ++ +M      +   +TF+
Sbjct: 167 ADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEM-FRLRIKSSVYTFN 225

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
            MI +    GK+ +A+     M  +G +PN+    +++  Y  + R +     L  +   
Sbjct: 226 IMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQ 285

Query: 476 GITPDDRFCGCLLNVMTQTPK-EELGKLVE 504
            I PD    G L++ M +  + EE  K+ E
Sbjct: 286 KIEPDSFTYGSLISGMCKQGRLEEASKIFE 315


>gi|15219388|ref|NP_178067.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200795|sp|Q9SAK0.1|PP132_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g79490, mitochondrial; AltName: Full=Protein EMBRYO
           DEFECTIVE 2217; Flags: Precursor
 gi|4835759|gb|AAD30226.1|AC007202_8 T8K14.9 [Arabidopsis thaliana]
 gi|332198129|gb|AEE36250.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 836

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 121/535 (22%), Positives = 237/535 (44%), Gaps = 47/535 (8%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  ++   K   L+ A   F    + G K D  T++ L+       LP KA E +E M 
Sbjct: 246 YNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESME 305

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                 D  TY  +I +  ++G ++ AF L+ + +  K R   + FS+L+   G AG  D
Sbjct: 306 KTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLD 365

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + VY EM+  G +P+   + +L+D+  +A +      ++ EM  +G  PN+  Y  ++
Sbjct: 366 TSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMII 425

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            ++ ++   E  ++V+++M++ G   + + Y+ LL M A  G  D A +I+  M ++   
Sbjct: 426 ESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSM-TNAGL 484

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P   ++ S++T+ + +  V  A  +  EM   G+  ++   + ++  Y K    D  ++
Sbjct: 485 RPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDV-CASDVLMIYIKDASVDLALK 543

Query: 468 ALNRLPELGITPDD-----RFCGCLLNVMTQTPKEELGKLVECVEKSN-----SKLGYVV 517
            L  +   GI  ++      F  C+ N +  + +  L  LV    K +     S L ++V
Sbjct: 544 WLRFMGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKVDLVLYTSILAHLV 603

Query: 518 KLLLEEQDIE-----------------GDF-----KKEAT-----ELFNSISKDVKKA-- 548
           +   E+++ +                 G F     +K+       E +  I  ++++   
Sbjct: 604 RCQDEDKERQLMSILSATKHKAHAFMCGLFTGPEQRKQPVLTFVREFYQGIDYELEEGAA 663

Query: 549 --YCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTA 605
             + N L++  V +  +  A  + ++    +++   I       WSL +++LS+GAAL A
Sbjct: 664 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIA 723

Query: 606 LHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASV---FESHLKELNAP 657
           +   ++   K +      P  + + TG        + L+SV   FE     L AP
Sbjct: 724 VVHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVLRAP 778



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 109/220 (49%), Gaps = 1/220 (0%)

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
           NA++ +I+    A   +     +++ +  G K +  TYNNL+        P++   IY+ 
Sbjct: 244 NAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYES 303

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           M       + +TY  ++ +  ++   +    ++++MKE+ ++ S +++++L+      G 
Sbjct: 304 MEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGR 363

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
            D + +++ +M+   + +P +  F S+I   +  GK+  A  +++EM ++GF PN  + T
Sbjct: 364 LDTSMKVYMEMQGFGH-RPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYT 422

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
            +I+ + K+ + +  +     + + G  P      CLL +
Sbjct: 423 MIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEM 462



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 126/273 (46%), Gaps = 16/273 (5%)

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP---NWNTYASLLRAYGRARYGEDTLSVYR 364
           Y  L D + + +    ++++++EM  +  S    ++N Y  +++   +A   E     ++
Sbjct: 208 YVVLFDGLNQGRDFVGIQSLFEEMVQDSSSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFK 267

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           + +E G ++    YN L+ +  + G   +AFEI+E M+ +++   D  T+  +I   +  
Sbjct: 268 KAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLL-DGSTYELIIPSLAKS 326

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
           G++  A  +F +M E    P+  V +SL+   GKA R D  ++    +   G  P     
Sbjct: 327 GRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMF 386

Query: 485 GCLLNVMTQTPKEELG-KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543
             L++   +  K +   +L + ++KS    G+     L    IE   K    E+  ++ K
Sbjct: 387 VSLIDSYAKAGKLDTALRLWDEMKKS----GFRPNFGLYTMIIESHAKSGKLEVAMTVFK 442

Query: 544 DVKKA-------YCNCLIDLCVNLNLLENACKL 569
           D++KA         +CL+++      +++A K+
Sbjct: 443 DMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 475


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 145/301 (48%), Gaps = 5/301 (1%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D   ++  +M+ R + PD VTFS LI          +A E +  M + G  PD +TY+S+
Sbjct: 326 DDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSL 385

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           ID + +   +  A  ++D   ++    D   +S LI  Y  A   D  + ++ E+ + G+
Sbjct: 386 IDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGL 445

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE--DT 359
            PN ITYN L+    ++ +    K +++EM   G+ P+  TY  LL   G    GE    
Sbjct: 446 IPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLD--GLCDNGELNKA 503

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           L ++ +M++  M L + +YN ++    +    D+A+ +F  + S +  +PD  T++ MI 
Sbjct: 504 LEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSL-SDKGVKPDVVTYNVMIG 562

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
               +G +SEA+ +F +M E G  P+ F    LI+ +         V  +  +   G + 
Sbjct: 563 GLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSA 622

Query: 480 D 480
           D
Sbjct: 623 D 623



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 157/329 (47%), Gaps = 5/329 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           + +A  L D M++   +PD VT STLI+   +    ++A+   +RM  +G  PD +TY  
Sbjct: 185 VSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGP 244

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +++   ++GN  +A  L+ +      +     +S +I      G+FD  L+++ EM+  G
Sbjct: 245 VLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKG 304

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           +K +++TY++L+  +    +      + +EM    + P+  T+++L+  + +     +  
Sbjct: 305 IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAK 364

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            +Y EM  +G+      YN+L+          EA ++F D+  S+ C+PD  T+S +I  
Sbjct: 365 ELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMF-DLMVSKGCEPDIVTYSILIN- 422

Query: 421 CSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             C+ K V +   +F E+   G  PN     +L+  + ++ + +        +   G+ P
Sbjct: 423 SYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPP 482

Query: 480 DDRFCGCLLNVMTQTPKEELGKLVECVEK 508
                G LL+ +      EL K +E  EK
Sbjct: 483 SVVTYGILLDGLCDNG--ELNKALEIFEK 509



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 140/313 (44%), Gaps = 11/313 (3%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           ++ A  LF+ M+     P  + F+ L S        +  + + + M   G + D  T + 
Sbjct: 80  VNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTI 139

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           MI+ Y R   +  AF +  RA    +  D   FSTL+  +   G     + + + M  + 
Sbjct: 140 MINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMK 199

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
            +P+++T + L++ +    R  +   +   M + G  P+  TY  +L    ++      L
Sbjct: 200 QRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALAL 259

Query: 361 SVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
            ++R+M+E+ ++ SV  Y+ ++ ++C D G  D+A  +F +M+  +  + D  T+SS+I 
Sbjct: 260 DLFRKMEERNIKASVVQYSIVIDSLCKD-GSFDDALSLFNEME-MKGIKADVVTYSSLIG 317

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                GK  +   M  EM+     P++   ++LI  + K  +  +     N +   GI P
Sbjct: 318 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAP 377

Query: 480 D--------DRFC 484
           D        D FC
Sbjct: 378 DTITYNSLIDGFC 390


>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
 gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
          Length = 941

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 159/355 (44%), Gaps = 3/355 (0%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           C+I +       + AL ++     +     +  Y++ +  F K +D   A  +F+D++  
Sbjct: 474 CLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKD 533

Query: 195 GVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           G+KPD V ++ +I     M N+ ++A+   + M    C P + T+  +I  + RAG +  
Sbjct: 534 GLKPDVVLYNNIIKAFCGMGNM-DRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRR 592

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  ++D  R        + F+ L+         +  + + +EM   GV P+  TY  ++ 
Sbjct: 593 ALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMH 652

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
                    +    + +M + GL  +  TY +LL+A  ++   +  L+V REM  + +  
Sbjct: 653 GYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPR 712

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           +  +YN L+   A  G   EA ++ + M + E  QPD  T++S I  C   G +  A   
Sbjct: 713 NTFVYNILIDGWARRGDIWEAADLMQQM-NQEGVQPDIHTYTSFINACCKAGDMLRATKT 771

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
             EM  AG +PN+   T+LI  +  A   +  +     L   G+ PD     CL+
Sbjct: 772 MEEMEAAGVKPNVKTYTTLIHGWANASLPEKALSCFEELKLAGLKPDKAVYHCLM 826



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 159/375 (42%), Gaps = 10/375 (2%)

Query: 93  KSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALAL 152
           K+Y    N  +KL    ++ +  ED +   L+   D  L  + +     M N D A + +
Sbjct: 505 KTYSMLINGFLKLKDWTNAFAVFEDVIKDGLK--PDVVLYNNIIKAFCGMGNMDRA-IHM 561

Query: 153 TYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARM 212
                K +       +   +  F +  ++ +A  +FD M   G  P   TF+ L+     
Sbjct: 562 VKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVE 621

Query: 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
                KAVE  + M   G  PD  TY++++  Y   G+   AF  + + RNE  ++D   
Sbjct: 622 KRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFT 681

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           +  L+K    +G     L V  EM A  +  N   YN L+D   R    W+   + ++M 
Sbjct: 682 YEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMN 741

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             G+ P+ +TY S + A  +A           EM+  G++ +V  Y TL+   A+    +
Sbjct: 742 QEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWANASLPE 801

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE------AMFNEMLEAGFEPNL 446
           +A   FE++K +   +PD   +  ++T    R  V+EA       ++  EM+E     ++
Sbjct: 802 KALSCFEELKLA-GLKPDKAVYHCLMTSLLSRATVAEAYIYSGILSICREMIEFELTVDM 860

Query: 447 FVLTSLIQCYGKAQR 461
                  +C  K +R
Sbjct: 861 GTAVYWSKCLRKIER 875



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/375 (20%), Positives = 163/375 (43%), Gaps = 38/375 (10%)

Query: 143 TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVT 202
           T P+     ++ F    K S+    + + +  + +  D+ +A + F+ M  RG+ P +  
Sbjct: 274 TQPENWQAVVSAFERIKKPSRRE--FGLMVGYYARRGDMHRARQTFESMRARGIDPSSHV 331

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           +++LI    +     +A+    +M   G +   +TYS ++  + + GN E A   + +A+
Sbjct: 332 YTSLIHAYAVGRDMEEALSCVRKMNEEGIEMSLVTYSIVVGGFAKFGNAEAADCWFKKAK 391

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNFD----------------------------------- 287
                ++   +  +I  Y  A N D                                   
Sbjct: 392 ERHTNLNAYIYGNIIYAYCQACNMDRAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEE 451

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
            CL V++ +K  G  P++ITY  L++   +  +  +   + K M   G+  N  TY+ L+
Sbjct: 452 KCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLI 511

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             + + +   +  +V+ ++ + G++  V LYN ++     +G  D A  + ++M+  E C
Sbjct: 512 NGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQ-KERC 570

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P S TF  +I   +  G++  A  +F+ M  +G  P +    +L+    + ++ +  V 
Sbjct: 571 RPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVE 630

Query: 468 ALNRLPELGITPDDR 482
            L+ +   G++PD+ 
Sbjct: 631 ILDEMALAGVSPDEH 645



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 146/316 (46%), Gaps = 5/316 (1%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y+  M  +   R+ +K   +F  + + G  P  +T+  LI+        +KA+E  + M
Sbjct: 436 IYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEVSKMM 495

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            S G   +  TYS +I+ + +  +   AF +++    +  + D   ++ +IK +   GN 
Sbjct: 496 KSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNM 555

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  +++ +EM+    +P   T+  ++    RA    +   I+  M  +G  P  +T+ +L
Sbjct: 556 DRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNAL 615

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +      R  E  + +  EM   G+      Y T++   A +G T +AFE F  M+ +E 
Sbjct: 616 VLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMR-NEG 674

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD--D 464
            Q D +T+ +++  C   G++  A A+  EM       N FV   LI   G A+R D  +
Sbjct: 675 LQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILID--GWARRGDIWE 732

Query: 465 VVRALNRLPELGITPD 480
               + ++ + G+ PD
Sbjct: 733 AADLMQQMNQEGVQPD 748


>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 685

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 167/378 (44%), Gaps = 42/378 (11%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++  YN+ +    K   LD++ ++F DM  +   PD  T++ +I          +++  F
Sbjct: 268 DIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALF 327

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL---- 279
           E M + GC P+ + Y++MI A  ++G V+ A  L+        R  PN F+  I L    
Sbjct: 328 EEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCR--PNEFTYSIILNVLV 385

Query: 280 -YGTAGNFDGCLNVYEEMKAIGVKPNMI-----------------------------TYN 309
             G  G  D  L V  +     +   ++                              Y 
Sbjct: 386 AEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYI 445

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
           ++L+++ R  +  +   +  ++ + G+S +   Y ++L   G+ +       +Y +MK+ 
Sbjct: 446 SMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQD 505

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G    +  YN L++    VG   EA E+FE+++SS+ C+PD  +++S+I      G V E
Sbjct: 506 GPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSD-CKPDIISYNSLINCLGKNGDVDE 564

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           A   F EM + G  P++   ++LI+C+GK  + +      +R+   G  P+      LL+
Sbjct: 565 AHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLD 624

Query: 490 VMTQTPKEELGKLVECVE 507
            +     E  G+  E V+
Sbjct: 625 CL-----ERAGRTAETVD 637



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 99/187 (52%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + ++YN  +    K + +     L++ M   G  PD  T++ LIS         +AVE
Sbjct: 473 STDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVE 532

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            FE + S  C PD ++Y+S+I+  G+ G+V+ A   +   +++    D   +STLI+ +G
Sbjct: 533 VFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFG 592

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                +   ++++ M   G  PN++TYN LLD + RA R  +   +Y ++ + GL+P+  
Sbjct: 593 KTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSI 652

Query: 342 TYASLLR 348
           TYA L R
Sbjct: 653 TYAILDR 659



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 117/249 (46%), Gaps = 1/249 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y   ++   K     +A RLF +M       D   + +++          +A+E   ++
Sbjct: 408 IYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKV 467

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G   D + Y++++   G+   V     LY++ + +    D   ++ LI   G  G  
Sbjct: 468 HEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKV 527

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              + V+EE+++   KP++I+YN+L++ +G+     +    + EM D GL+P+  TY++L
Sbjct: 528 KEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTL 587

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  +G+    E   S++  M  +G   ++  YN LL      G T E  +++  ++  + 
Sbjct: 588 IECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLR-EQG 646

Query: 407 CQPDSWTFS 415
             PDS T++
Sbjct: 647 LTPDSITYA 655



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 109/206 (52%), Gaps = 12/206 (5%)

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYE 294
           T + +I  +    ++E+  GL      +KW +  NA++   L++ +  + + D   NVY 
Sbjct: 204 TVNILIKIFSSNEDLELCTGLI-----KKWDLRLNAYTYRCLLQAHIRSRDSDRAFNVYM 258

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           EM + G + ++  YN LLD + + ++  +   ++K+M     +P+  TY  ++R  G+  
Sbjct: 259 EMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMG 318

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             E++L+++ EM  KG   ++  YNT++   +  G  D+A  +F +M  + NC+P+ +T+
Sbjct: 319 RAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKN-NCRPNEFTY 377

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEA 440
           S ++ +    G++       +E+LE 
Sbjct: 378 SIILNVLVAEGQLGR----LDEVLEV 399



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/342 (20%), Positives = 151/342 (44%), Gaps = 18/342 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ +K+F    DL+    L        ++ +  T+  L+     +   ++A   +  M S
Sbjct: 206 NILIKIFSSNEDLELCTGLIKKW---DLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWS 262

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G   D   Y+ ++DA  +   ++ ++ ++   + +    D   ++ +I++ G  G  + 
Sbjct: 263 NGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEE 322

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L ++EEM   G  PN+I YN ++  + ++    +   ++  M  N   PN  TY+ +L 
Sbjct: 323 SLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILN 382

Query: 349 ---AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
              A G+    ++ L V  +   K      ++Y  L+   + +G++ EA  +F +M S  
Sbjct: 383 VLVAEGQLGRLDEVLEVSNKFINK------SIYAYLVRTLSKLGHSSEAHRLFCNMWSFH 436

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           +        S + ++C   GK  EA  + +++ E G   +  +  +++   GK ++   +
Sbjct: 437 DGGDRDAYISMLESLCR-GGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHL 495

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
                ++ + G  PD      L++ + +     +GK+ E VE
Sbjct: 496 HDLYEKMKQDGPFPDIFTYNILISSLGR-----VGKVKEAVE 532



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 61/116 (52%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I YN  +    K  D+D+A   F +M D+G+ PD VT+STLI C    +    A   F
Sbjct: 545 DIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLF 604

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           +RM + GC P+ +TY+ ++D   RAG       LY + R +    D   ++ L +L
Sbjct: 605 DRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITYAILDRL 660


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 177/384 (46%), Gaps = 46/384 (11%)

Query: 138 ILNNMTNPDTAALALTYFTN----KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           +LN +     +ALAL  F       +KAS  V+ Y++ +    K    D A  LF++M  
Sbjct: 216 VLNRLCKSGNSALALDLFRKMEERNIKAS--VVQYSIVIDSLCKDGSFDDALSLFNEMEM 273

Query: 194 RGVKPDNVTFSTLIS--C--------ARM-------NNLPN------------------K 218
           +G+K D VT+S+LI   C        A+M       N +P+                  +
Sbjct: 274 KGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLE 333

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A E +  M + G  PD +TY+S+ID + +   +  A  ++D   ++    D   +S LI 
Sbjct: 334 AKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILIN 393

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            Y  A   D  + ++ E+ + G+ PN ITYN L+    ++ +    K +++EM   G+ P
Sbjct: 394 SYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPP 453

Query: 339 NWNTYASLLRAYGRARYGE--DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
           +  TY  LL   G    GE    L ++ +M++  M L + +YN ++    +    D+A+ 
Sbjct: 454 SVVTYGILLD--GLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWS 511

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           +F  + S +  +PD  T++ MI     +G +SEA+ +F +M E G  P+ F    LI+ +
Sbjct: 512 LFCSL-SDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAH 570

Query: 457 GKAQRTDDVVRALNRLPELGITPD 480
                    V  +  +   G + D
Sbjct: 571 LGGSGLISSVELIEEMKVCGFSAD 594



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 157/329 (47%), Gaps = 5/329 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           + +A  L D M++   +PD VT STLI+   +    ++A+   +RM  +G  PD +TY  
Sbjct: 156 VSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGP 215

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +++   ++GN  +A  L+ +      +     +S +I      G+FD  L+++ EM+  G
Sbjct: 216 VLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKG 275

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           +K +++TY++L+  +    +      + +EM    + P+  T+++L+  + +     +  
Sbjct: 276 IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAK 335

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            +Y EM  +G+      YN+L+          EA ++F D+  S+ C+PD  T+S +I  
Sbjct: 336 ELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMF-DLMVSKGCEPDIVTYSILIN- 393

Query: 421 CSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             C+ K V +   +F E+   G  PN     +L+  + ++ + +        +   G+ P
Sbjct: 394 SYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPP 453

Query: 480 DDRFCGCLLNVMTQTPKEELGKLVECVEK 508
                G LL+ +      EL K +E  EK
Sbjct: 454 SVVTYGILLDGLCDNG--ELNKALEIFEK 480



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 140/313 (44%), Gaps = 11/313 (3%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           ++ A  LF+ M+     P  + F+ L S        +  + + + M   G + D  T + 
Sbjct: 51  VNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTI 110

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           MI+ Y R   +  AF +  RA    +  D   FSTL+  +   G     + + + M  + 
Sbjct: 111 MINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMK 170

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
            +P+++T + L++ +    R  +   +   M + G  P+  TY  +L    ++      L
Sbjct: 171 QRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALAL 230

Query: 361 SVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
            ++R+M+E+ ++ SV  Y+ ++ ++C D G  D+A  +F +M+  +  + D  T+SS+I 
Sbjct: 231 DLFRKMEERNIKASVVQYSIVIDSLCKD-GSFDDALSLFNEME-MKGIKADVVTYSSLIG 288

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                GK  +   M  EM+     P++   ++LI  + K  +  +     N +   GI P
Sbjct: 289 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAP 348

Query: 480 D--------DRFC 484
           D        D FC
Sbjct: 349 DTITYNSLIDGFC 361


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 154/307 (50%), Gaps = 7/307 (2%)

Query: 178 CR--DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           CR  +LDK  +L D++  +G+KPD   ++ +I     N    +A +    M  +G  PD 
Sbjct: 288 CRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDN 347

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           + Y+++I  + + GNV  A  L+D  R +K   D   ++++I     +G       ++ E
Sbjct: 348 VVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNE 407

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M   G++P+ +TY  L+D   +A    +  +++ +M   GL+PN  TY +L  A G  + 
Sbjct: 408 MLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTAL--ADGLCKN 465

Query: 356 GEDTLS--VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
           GE  ++  +  EM  KG+Q +V  YNT++     +G  ++  ++ E+M  +    PD+ T
Sbjct: 466 GEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLA-GFYPDTIT 524

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           +++++      G++++A  +   ML    +P L     L+  +  +   +D  R +  + 
Sbjct: 525 YTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWML 584

Query: 474 ELGITPD 480
           E GI P+
Sbjct: 585 EKGIMPN 591



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 157/361 (43%), Gaps = 38/361 (10%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++Y   +  F K  ++  A +LFD+M  + + PD VT++++I     +    +A E F  
Sbjct: 348 VVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNE 407

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR------------------------- 260
           M   G +PD +TY+++ID Y +AG ++ AF ++++                         
Sbjct: 408 MLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGE 467

Query: 261 --ARNE------KWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
               NE      +  + PN ++  T++      GN +  + + EEM   G  P+ ITY  
Sbjct: 468 IDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTT 527

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L+D   +     +   + + M +  L P   T+  L+  +  +   ED   +   M EKG
Sbjct: 528 LMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKG 587

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSE 429
           +  + T +N+L+             EI++ M       PDS T++ +I    C+ + + E
Sbjct: 588 IMPNATTFNSLMKQYCIKNNMRATTEIYKAMH-DRGVMPDSNTYNILIK-GHCKARNMKE 645

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           A  +  EM+E G+        +LI+ + K ++  +  +    + + G+  +       ++
Sbjct: 646 AWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVD 705

Query: 490 V 490
           V
Sbjct: 706 V 706



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 119/254 (46%), Gaps = 41/254 (16%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           ++D A  L  +M  +G++P+  T++T+++   ++ N+  + V+  E M   G  PD +TY
Sbjct: 467 EIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNI-EQTVKLMEEMDLAGFYPDTITY 525

Query: 239 SSMIDAYGRAGNVE-----------------------------MAFGLYDRARNEKWRID 269
           ++++DAY + G +                              M+  L D  R  +W ++
Sbjct: 526 TTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLE 585

Query: 270 ----PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
               PNA  F++L+K Y    N      +Y+ M   GV P+  TYN L+    +A+   +
Sbjct: 586 KGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKE 645

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
              ++KEM + G S    TY +L+R + + +   +   ++ EM++ G+     +Y+  + 
Sbjct: 646 AWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFV- 704

Query: 384 MCADVGYTDEAFEI 397
              DV Y +  +EI
Sbjct: 705 ---DVNYEEGNWEI 715



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 102/233 (43%), Gaps = 37/233 (15%)

Query: 285 NFDG---CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
           NF+G    + V+EE   +GV  N ++ N +L  + +  +  +   +  +MTD G  P+  
Sbjct: 219 NFEGIKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVV 278

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           +Y  ++  Y R    +  L +  E+K KG++    +YN ++ +    G   EA ++   M
Sbjct: 279 SYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGM 338

Query: 402 KS-----------------------SENCQ-----------PDSWTFSSMITICSCRGKV 427
           +                        S  C+           PD  T++S+I      GK+
Sbjct: 339 RKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKM 398

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            EA  MFNEML  G EP+    T+LI  Y KA    +     N++ + G+TP+
Sbjct: 399 VEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPN 451


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 165/337 (48%), Gaps = 3/337 (0%)

Query: 147 TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           +AAL L    +       V++YN  +    K + +++A  L+ +M+ +G+ PD VT+S L
Sbjct: 178 SAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSAL 237

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
           IS   +    N A+  F +M S   +PD  T+S ++D + + G V+ A  +      +  
Sbjct: 238 ISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGI 297

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           + D   + +L+  Y      +   +++  M   GV  N+ +YN +++   + K+  +   
Sbjct: 298 KPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMN 357

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMC 385
           ++KEM    + P+  TY SL+    ++      L +  EM ++G+      YN++L A+C
Sbjct: 358 LFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALC 417

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            +    D+A  +   MK  E  QPD +T++ +I      G++ +A+ +F ++L  G+   
Sbjct: 418 KN-HQVDKAIALLTKMK-DEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNIT 475

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           ++  T +IQ +      D  +  L+++ + G  P+ +
Sbjct: 476 VYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAK 512



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 154/346 (44%), Gaps = 3/346 (0%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR--DLDKAERLFDDMLDR 194
           I++N  +       + + F N LK   E     +T  +   C    + +A    D ++  
Sbjct: 96  ILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVAL 155

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G   + V + TLI+        + A++   R+      P+ + Y+++ID+  +   V  A
Sbjct: 156 GFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEA 215

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
           F LY    ++    D   +S LI  +   G  +  + ++ +M +  + P++ T++ L+D 
Sbjct: 216 FDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDG 275

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
             +  R  + K +   M   G+ P+  TY SL+  Y   +      S++  M + G+  +
Sbjct: 276 FCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTAN 335

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           V  YN ++     +   DEA  +F++M   +N  PD  T++S+I      GK+S A  + 
Sbjct: 336 VQSYNIMINGFCKIKKVDEAMNLFKEMH-CKNIIPDVVTYNSLIDGLCKSGKISYALKLV 394

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +EM + G   +     S++    K  + D  +  L ++ + GI PD
Sbjct: 395 DEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPD 440



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 134/297 (45%), Gaps = 1/297 (0%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
           A  L  +M   G+  D VTF+ LI+C       + +   F  +   G +P+A+T +++I 
Sbjct: 75  AISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIK 134

Query: 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
                G +  A   +D+     + ++   + TLI      G     L +   +    V+P
Sbjct: 135 GLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQP 194

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           N++ YN ++D+M + K   +   +Y EM   G+SP+  TY++L+  +       D + ++
Sbjct: 195 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLF 254

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
            +M  + +   V  ++ L+      G   EA  +   M   +  +PD  T+ S++     
Sbjct: 255 NKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLA-MMMKQGIKPDVVTYCSLMDGYCL 313

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             +V++A+++FN M + G   N+     +I  + K ++ D+ +     +    I PD
Sbjct: 314 VKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPD 370



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/309 (19%), Positives = 137/309 (44%), Gaps = 1/309 (0%)

Query: 188 FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
           F+ +L+    P    F  ++      N    A+     M   G   D +T++ +I+ + +
Sbjct: 44  FNRILNINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQ 103

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
            G+   +F ++     + +  +    +TLIK     G     L+ ++++ A+G   N + 
Sbjct: 104 LGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVC 163

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           Y  L++ + +  +      + + +    + PN   Y +++ +  + +   +   +Y EM 
Sbjct: 164 YGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMV 223

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
            KG+   V  Y+ L++    +G  ++A  +F  M  SE   PD +TFS ++      G+V
Sbjct: 224 SKGISPDVVTYSALISGFCILGKLNDAIGLFNKM-ISEEINPDVYTFSILVDGFCKEGRV 282

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
            EA+ +   M++ G +P++    SL+  Y   ++ +      N + + G+T + +    +
Sbjct: 283 KEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIM 342

Query: 488 LNVMTQTPK 496
           +N   +  K
Sbjct: 343 INGFCKIKK 351



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 114/261 (43%), Gaps = 1/261 (0%)

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           V  F R+ +    P    +  ++ +  +    + A  L+          D   F+ LI  
Sbjct: 41  VSSFNRILNINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINC 100

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           +   G+     +V+  +   G +PN IT   L+  +    +  Q    + ++   G   N
Sbjct: 101 FSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLN 160

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
              Y +L+    +       L + R +  K +Q +V +YNT++     V   +EAF+++ 
Sbjct: 161 KVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYS 220

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +M  S+   PD  T+S++I+     GK+++A  +FN+M+     P+++  + L+  + K 
Sbjct: 221 EM-VSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKE 279

Query: 460 QRTDDVVRALNRLPELGITPD 480
            R  +    L  + + GI PD
Sbjct: 280 GRVKEAKNVLAMMMKQGIKPD 300



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 88/191 (46%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +    K   +  A +L D+M DRGV  D +T+++++     N+  +KA+   
Sbjct: 370 DVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALL 429

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M   G  PD  TY+ +ID   + G ++ A  +++    + + I    ++ +I+ +   
Sbjct: 430 TKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDN 489

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
             FD  L +  +M+  G  PN  TY  ++ ++         + + +EM   GL   W   
Sbjct: 490 DLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGLLFGWKKA 549

Query: 344 ASLLRAYGRAR 354
             L   + + R
Sbjct: 550 YCLFTRFFQRR 560


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 144/316 (45%), Gaps = 36/316 (11%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++YN  +  F    +LD A    D+ML +G+ P   T+++LI    M    ++A    + 
Sbjct: 327 VIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKE 386

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +   G  PDA+TY+ +I+ Y R  N + AF L+D                          
Sbjct: 387 IQEKGISPDAITYNILINGYCRCANAKKAFLLHD-------------------------- 420

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                    EM A G+KP   TY +LL  + +  R  +   ++K++T  G+ P+   + +
Sbjct: 421 ---------EMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNA 471

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  +      +    + ++M    +      +NT++      G  +EA E+F++MK   
Sbjct: 472 LIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKR-R 530

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +PD  +F+++I+  S RG + +A  + NEML+ GF P +    +L+Q   K Q  D  
Sbjct: 531 GIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLA 590

Query: 466 VRALNRLPELGITPDD 481
              L  +   G+TPDD
Sbjct: 591 EELLKEMVSKGMTPDD 606



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 155/357 (43%), Gaps = 36/357 (10%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           +L+    V  +N+ + V  K   L KA+     M   GVKP+ VT++T++     +    
Sbjct: 214 RLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVE 273

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
            A      M     +PD+ TY S+I    + G +E A  +++    +  R     ++TLI
Sbjct: 274 AADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLI 333

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             +   GN D      +EM   G+ P M TYN+L+  +   +R  + + + KE+ + G+S
Sbjct: 334 DGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGIS 393

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P+  TY  L+  Y R    +    ++ EM   G++ +   Y +LL + +      EA ++
Sbjct: 394 PDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDL 453

Query: 398 FEDMKSSENCQPDSWTFSSMI-TICS---------------------------------C 423
           F+ + +SE   PD+  F+++I   CS                                 C
Sbjct: 454 FKKI-TSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHC 512

Query: 424 R-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           R GKV EA  +F+EM   G +P+     +LI  Y +     D  R  N + + G  P
Sbjct: 513 REGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNP 569



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 117/232 (50%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + I YN+ +  + +C +  KA  L D+ML  G+KP   T+++L+      N   +A +
Sbjct: 393 SPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADD 452

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F+++ S G  PDA+ ++++ID +    NV+ AF L       K   D   F+T+++ + 
Sbjct: 453 LFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHC 512

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G  +    +++EMK  G+KP+ I++N L+    R         +  EM D G +P   
Sbjct: 513 REGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVL 572

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
           TY +L++   + + G+    + +EM  KGM    T Y TL+   A V   DE
Sbjct: 573 TYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDE 624



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 146/314 (46%), Gaps = 3/314 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  + +F K    + A  L+ +M    +K    TF+ +I+         KA ++   M +
Sbjct: 190 NSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMET 249

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  P+ +TY++++  Y  +G VE A  +    + +K   D   + +LI      G  + 
Sbjct: 250 SGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEE 309

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK-EMTDNGLSPNWNTYASLL 347
              ++EEM   G++P+ + YN L+D     K    + + YK EM   G+SP  +TY SL+
Sbjct: 310 ASKIFEEMVQKGLRPSAVIYNTLIDGFCN-KGNLDMASAYKDEMLKKGISPTMSTYNSLI 368

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A    +  ++   + +E++EKG+      YN L+          +AF + ++M +S   
Sbjct: 369 HALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLAS-GI 427

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P   T++S++ + S + ++ EA+ +F ++   G  P+  +  +LI  +           
Sbjct: 428 KPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFE 487

Query: 468 ALNRLPELGITPDD 481
            L  +  + + PD+
Sbjct: 488 LLKDMDRMKVPPDE 501



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 128/302 (42%), Gaps = 3/302 (0%)

Query: 193 DRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
           DR     ++ F  LI SC  MN   ++A E F  M   G  P   T +S++  + +    
Sbjct: 144 DRLGFKSSIVFDYLIKSCCDMNR-ADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRT 202

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           E A+ LY      + +     F+ +I +    G      +    M+  GVKPN++TYN +
Sbjct: 203 EAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTI 262

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +     + R      I   M    + P+  TY SL+    +    E+   ++ EM +KG+
Sbjct: 263 VHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGL 322

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
           + S  +YNTL+    + G  D A   ++D    +   P   T++S+I       +  EAE
Sbjct: 323 RPSAVIYNTLIDGFCNKGNLDMA-SAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAE 381

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            M  E+ E G  P+      LI  Y +           + +   GI P  +    LL+V+
Sbjct: 382 CMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVL 441

Query: 492 TQ 493
           ++
Sbjct: 442 SK 443



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 71/150 (47%), Gaps = 2/150 (1%)

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            ++    +  MKEKG+  ++   N+LL++   +  T+ A+ ++ +M      +   +TF+
Sbjct: 167 ADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEM-FRLRIKSSVYTFN 225

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
            MI +    GK+ +A+     M  +G +PN+    +++  Y  + R +     L  +   
Sbjct: 226 IMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQ 285

Query: 476 GITPDDRFCGCLLNVMTQTPK-EELGKLVE 504
            I PD    G L++ M +  + EE  K+ E
Sbjct: 286 KIEPDSFTYGSLISGMCKQGRLEEASKIFE 315


>gi|168023641|ref|XP_001764346.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684498|gb|EDQ70900.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 978

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 138/293 (47%), Gaps = 12/293 (4%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFG--CDP 233
           +   L KA   +  M+ + VKPD V F+TLI +C R   +  +A +    M +      P
Sbjct: 377 RAGQLPKAFGAYGIMISKNVKPDRVIFNTLINACTRAGAV-QRAFDVLTDMKAEATPIKP 435

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           D +TY ++I A  RAG V+ A  +Y   R    +  P  ++ ++      GN D  L VY
Sbjct: 436 DHVTYGALISACARAGEVDRALEVYQNMRESNVKGSPACYTAVVHACSQKGNVDYALLVY 495

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
           +++K  GVKP+ + ++ L+D  G A+   +  +I   M   GL P    Y+SL+      
Sbjct: 496 DDLKKDGVKPDEVFFSALVDAAGHAQDIEKAFSIIANMKKEGLKPGAVVYSSLMGVCSNL 555

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
              E  L VY++++  G+Q +V+ +N L+    +      A  I +D+K+S    P+  +
Sbjct: 556 GNWEKALEVYQDIRSSGLQPTVSTFNALMTALCEANQFTRALSILQDVKNS-GIMPNQIS 614

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL-------IQCYGKA 459
           +S ++  C        A  ++   L  G +PN+ +  S+       IQ Y  A
Sbjct: 615 YSILLRACEKEKMADMALDLYMTALSEGIKPNVGICDSITGLCLQQIQSYAAA 667



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 159/331 (48%), Gaps = 5/331 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFE 224
           + Y   +    K   +D   ++F +M   G++ +  TF  +I  CAR   LP KA   + 
Sbjct: 331 MFYTSLISACAKAGKVDLLFQIFHEMEVAGIEANVHTFGAMIDGCARAGQLP-KAFGAYG 389

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGT 282
            M S    PD + ++++I+A  RAG V+ AF +    + E   I P+   +  LI     
Sbjct: 390 IMISKNVKPDRVIFNTLINACTRAGAVQRAFDVLTDMKAEATPIKPDHVTYGALISACAR 449

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           AG  D  L VY+ M+   VK +   Y  ++    +         +Y ++  +G+ P+   
Sbjct: 450 AGEVDRALEVYQNMRESNVKGSPACYTAVVHACSQKGNVDYALLVYDDLKKDGVKPDEVF 509

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           +++L+ A G A+  E   S+   MK++G++    +Y++L+ +C+++G  ++A E+++D++
Sbjct: 510 FSALVDAAGHAQDIEKAFSIIANMKKEGLKPGAVVYSSLMGVCSNLGNWEKALEVYQDIR 569

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           SS   QP   TF++++T      + + A ++  ++  +G  PN    + L++   K +  
Sbjct: 570 SS-GLQPTVSTFNALMTALCEANQFTRALSILQDVKNSGIMPNQISYSILLRACEKEKMA 628

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           D  +         GI P+   C  +  +  Q
Sbjct: 629 DMALDLYMTALSEGIKPNVGICDSITGLCLQ 659



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 164/338 (48%), Gaps = 32/338 (9%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASK--------EVILYNVTMKVFRKCRDLDKAERLF 188
           +I N + N  T A A+    + L   K        + + Y   +    +  ++D+A  ++
Sbjct: 401 VIFNTLINACTRAGAVQRAFDVLTDMKAEATPIKPDHVTYGALISACARAGEVDRALEVY 460

Query: 189 DDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
            +M +  VK     ++ ++ +C++  N+ + A+  ++ +   G  PD + +S+++DA G 
Sbjct: 461 QNMRESNVKGSPACYTAVVHACSQKGNV-DYALLVYDDLKKDGVKPDEVFFSALVDAAGH 519

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
           A ++E AF +    + E  +     +S+L+ +    GN++  L VY+++++ G++P + T
Sbjct: 520 AQDIEKAFSIIANMKKEGLKPGAVVYSSLMGVCSNLGNWEKALEVYQDIRSSGLQPTVST 579

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           +N L+  +  A +  +  +I +++ ++G+ PN  +Y+ LLRA  + +  +  L +Y    
Sbjct: 580 FNALMTALCEANQFTRALSILQDVKNSGIMPNQISYSILLRACEKEKMADMALDLYMTAL 639

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
            +G++ +V + +++  +C             + ++S        W   SM+ + +    +
Sbjct: 640 SEGIKPNVGICDSITGLC------------LQQIQSYAAAPQKLW---SMLPVPADSNNL 684

Query: 428 SE-------AEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           S        A +++ + +EAG  P +  L+ L+ C  K
Sbjct: 685 SSTDQWSTWALSVYRQTIEAGTPPKIETLSQLLGCLRK 722



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 28/261 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +    +  ++D A  ++DD+   GVKPD V FS L+  A       KA      M 
Sbjct: 475 YTAVVHACSQKGNVDYALLVYDDLKKDGVKPDEVFFSALVDAAGHAQDIEKAFSIIANMK 534

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P A+ YSS++      GN E A  +Y   R+   +   + F+ L+     A  F 
Sbjct: 535 KEGLKPGAVVYSSLMGVCSNLGNWEKALEVYQDIRSSGLQPTVSTFNALMTALCEANQFT 594

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL- 346
             L++ +++K  G+ PN I+Y+ LL    + K       +Y      G+ PN     S+ 
Sbjct: 595 RALSILQDVKNSGIMPNQISYSILLRACEKEKMADMALDLYMTALSEGIKPNVGICDSIT 654

Query: 347 ------LRAYGRA---------------------RYGEDTLSVYREMKEKGMQLSVTLYN 379
                 +++Y  A                     ++    LSVYR+  E G    +   +
Sbjct: 655 GLCLQQIQSYAAAPQKLWSMLPVPADSNNLSSTDQWSTWALSVYRQTIEAGTPPKIETLS 714

Query: 380 TLLAMCADVGYTDEAFEIFED 400
            LL     +  + +A   F+D
Sbjct: 715 QLLGCLRKLETSTKALTTFDD 735



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 11/203 (5%)

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG----LSPNWNTYASLLRAY 350
           E+  + ++ N+  Y ++  +M +A R      +  EM   G    +  N + +    +A 
Sbjct: 217 ELLPLKLETNIKFYIDVYASMLKAGRIKDCLKLLGEMDKAGKLARMKVNHSKFYEACKAR 276

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
           G     ED  +  + M+E     ++  Y  LL++C      D A  +   ++S    + D
Sbjct: 277 GSV---EDAFAFAKLMREFS---TLQHYTMLLSVCCHAKDIDGALRVLALLES-RGLKAD 329

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
              ++S+I+ C+  GKV     +F+EM  AG E N+    ++I    +A +      A  
Sbjct: 330 CMFYTSLISACAKAGKVDLLFQIFHEMEVAGIEANVHTFGAMIDGCARAGQLPKAFGAYG 389

Query: 471 RLPELGITPDDRFCGCLLNVMTQ 493
            +    + PD      L+N  T+
Sbjct: 390 IMISKNVKPDRVIFNTLINACTR 412


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 174/369 (47%), Gaps = 13/369 (3%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +NV +    K  D+ +  +L D+M  +G  P+ VT++T+I+   +    +KAV   +R
Sbjct: 259 VTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDR 318

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M +  C P+ +TY ++I+   + G       L           +  A+STLI        
Sbjct: 319 MVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEK 378

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  + ++++M   G +PN++ Y+ L+D + R  +  + K I  EM + G +PN  TY+S
Sbjct: 379 SEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSS 438

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSS 404
           L++ + +    +  + V++EM +     +   Y+ L+  +C D G   EA  ++  M   
Sbjct: 439 LIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCED-GKLREAMMMWTHM-LG 496

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML--EAGFEPNLFVLTSLIQCYGKAQRT 462
              +PD   +SSMI      G V     +FNEML  E+  +P++     L++   K    
Sbjct: 497 RGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSI 556

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMT------QTPKEELGKLVECVEKSNSKLGY- 515
              +  LN + + G  PD   C   LN +       Q  +E L +LV  + K    +G  
Sbjct: 557 SHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAA 616

Query: 516 -VVKLLLEE 523
            +++++L++
Sbjct: 617 KIIEVMLQK 625



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 158/347 (45%), Gaps = 5/347 (1%)

Query: 138 ILNNMTNPDTAALALTYFT----NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           +LN +        AL ++      K   S  V+ +N+ +K   K   +D+A  +F +M  
Sbjct: 157 VLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAI 216

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           +  +PD  T+ TL+      +  ++AV   + M   GC P ++T++ +I+   + G++  
Sbjct: 217 QKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVR 276

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
              L D    +    +   ++T+I      G  D  +++ + M A    PN +TY  L++
Sbjct: 277 VTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLIN 336

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
            + +  R      +   + + G   N   Y++L+    +    E+ + ++++M EKG Q 
Sbjct: 337 GLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQP 396

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           ++ +Y+ L+      G  DEA EI  +M  ++ C P+++T+SS+I      G   +A  +
Sbjct: 397 NIVVYSALIDGLCREGKLDEAKEILCEM-VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRV 455

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           + EM +    PN    + LI    +  +  + +     +   G+ PD
Sbjct: 456 WKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPD 502



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/394 (20%), Positives = 173/394 (43%), Gaps = 7/394 (1%)

Query: 93  KSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTN---PDTAA 149
           KS D+ + SL++  A+      T   VF  ++     F+E++ +++         P+ A 
Sbjct: 77  KSGDSTFYSLIENYANSGD-FGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAI 135

Query: 150 LALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDML--DRGVKPDNVTFSTLI 207
                  ++ +  + V  +N  + V  +     +A   ++  +     + P+ ++F+ +I
Sbjct: 136 ELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVI 195

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                  L ++A+E F  M    C+PD  TY +++D   +   ++ A  L D  + E   
Sbjct: 196 KAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCF 255

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                F+ LI      G+      + + M   G  PN +TYN +++ +    +  +  ++
Sbjct: 256 PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSL 315

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
              M  +   PN  TY +L+    +     D + +   ++E+G   +   Y+TL++    
Sbjct: 316 LDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFK 375

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
              ++EA  +++ M   + CQP+   +S++I      GK+ EA+ +  EM+  G  PN F
Sbjct: 376 EEKSEEAMGLWKKM-VEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAF 434

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
             +SLI+ + K   +   +R    + +    P++
Sbjct: 435 TYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNE 468



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 131/295 (44%), Gaps = 4/295 (1%)

Query: 214 NLPNKAVEWFERM-PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN- 271
           +LP KA+E F RM   F C     +++S+++   + G    A   Y+     K  I PN 
Sbjct: 129 HLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNV 188

Query: 272 -AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
            +F+ +IK     G  D  + V+ EM     +P++ TY  L+D + +  R  +   +  E
Sbjct: 189 LSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDE 248

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           M   G  P+  T+  L+    +         +   M  KG   +   YNT++      G 
Sbjct: 249 MQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGK 308

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
            D+A  + + M +S+ C P+  T+ ++I     +G+  +   + + + E G   N +  +
Sbjct: 309 LDKAVSLLDRMVASK-CVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYS 367

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 505
           +LI    K +++++ +    ++ E G  P+      L++ + +  K +  K + C
Sbjct: 368 TLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILC 422



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 79/383 (20%), Positives = 160/383 (41%), Gaps = 18/383 (4%)

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           T+ S+I+ Y  +G+    F ++DR + E+       F  + + YG A   +  + ++  M
Sbjct: 82  TFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRM 141

Query: 297 -KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN--GLSPNWNTYASLLRAYGRA 353
                 +  + ++N++L+ + +     +    Y+        +SPN  ++  +++A  + 
Sbjct: 142 VDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKL 201

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
              +  + V+REM  +  +  V  Y TL+         DEA  + ++M+  E C P S T
Sbjct: 202 GLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQ-IEGCFPSSVT 260

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           F+ +I     +G +     + + M   G  PN     ++I       + D  V  L+R+ 
Sbjct: 261 FNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMV 320

Query: 474 ELGITPDDRFCGCLLNVMTQTPKEELGK--LVECVEKSNSKLGYVVKLLLEEQDIEGDFK 531
                P+D   G L+N + +  +   G   L    E+ +    Y    L     I G FK
Sbjct: 321 ASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTL-----ISGLFK 375

Query: 532 KEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWS 591
           +E +E    + K + +    C  ++ V   L++  C+  +L    E+  ++ ++  T  +
Sbjct: 376 EEKSEEAMGLWKKMVEK--GCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNA 433

Query: 592 LHLKSL-----SLGAALTALHIW 609
               SL       G +  A+ +W
Sbjct: 434 FTYSSLIKGFFKTGNSQKAIRVW 456


>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
          Length = 633

 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 163/365 (44%), Gaps = 33/365 (9%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++  YN+ +    K   +D+A ++F+DM      PD  T++ LI  +       K V   
Sbjct: 217 DIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDAYTYTILIRMSGKAGKTTKFVSLL 276

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M S GC  + + Y+++I+A G+   V+ A  +  +      R +   +S ++ +  T 
Sbjct: 277 EEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLDVLSTG 336

Query: 284 GNF----------DGCLN----------------------VYEEMKAIGVKPNMITYNNL 311
           G             GCLN                      V+  M     K +   + ++
Sbjct: 337 GQLHRLNEILDICSGCLNRPVYSYLIKALCKSGHASEAHSVFCRMWNSHEKGDRYAFVSM 396

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           L+ +  A++  +   +   M + G++ +   Y  +  A G+ +      S+Y  M+  G+
Sbjct: 397 LEALCNAEKTTEAIDLLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGV 456

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
              V  YN +++    VG  D+A E+FE+M+   +C+PD  T++SMI      G + EA 
Sbjct: 457 VPDVFTYNIMISSFGRVGLVDKASELFEEMEDG-SCKPDVVTYNSMINCLGKNGDLDEAH 515

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            +F +M E G++P++F  + LI+C+GK+ + D      + +   G  P+      LL+ +
Sbjct: 516 MLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCL 575

Query: 492 TQTPK 496
            +  K
Sbjct: 576 ERRGK 580



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 109/208 (52%)

Query: 147 TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           T A+ L +   +   + +V +YN+      K + +     L+D M   GV PD  T++ +
Sbjct: 407 TEAIDLLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIM 466

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
           IS      L +KA E FE M    C PD +TY+SMI+  G+ G+++ A  L+   + + +
Sbjct: 467 ISSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGY 526

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             D   +S LI+ +G +   D   ++++EM A G  PN++TYN LLD + R  +  +   
Sbjct: 527 DPDVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAHK 586

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRAR 354
            Y+ +   GL+P+  TY+ L R   R++
Sbjct: 587 FYETLKQQGLTPDSITYSILERLESRSQ 614



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 137/313 (43%), Gaps = 19/313 (6%)

Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFT--------NKLKASKEVI------ 166
           +V+  LG + +  + + +L+ M   D      TY           +L    E++      
Sbjct: 293 TVIEALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLDVLSTGGQLHRLNEILDICSGC 352

Query: 167 ----LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
               +Y+  +K   K     +A  +F  M +   K D   F +++          +A++ 
Sbjct: 353 LNRPVYSYLIKALCKSGHASEAHSVFCRMWNSHEKGDRYAFVSMLEALCNAEKTTEAIDL 412

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
              MP  G   D   Y+ +  A G+   V     LYD  R      D   ++ +I  +G 
Sbjct: 413 LHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGR 472

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G  D    ++EEM+    KP+++TYN++++ +G+     +   ++K+M + G  P+  T
Sbjct: 473 VGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFT 532

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y+ L+  +G++   +   S++ EM  +G   ++  YN LL      G T EA + +E +K
Sbjct: 533 YSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAHKFYETLK 592

Query: 403 SSENCQPDSWTFS 415
             +   PDS T+S
Sbjct: 593 -QQGLTPDSITYS 604



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 158/342 (46%), Gaps = 18/342 (5%)

Query: 145 PDTAALALTYF----TNKLKASKEVILYN-VTMKVFRKCRDLDKAERLFDDMLDRGVKPD 199
           PDT+ LAL++F    T+      +   YN + + +F    D  +A RL  +M   GV  +
Sbjct: 95  PDTS-LALSFFRFAATSLPGFRHDAFSYNRILVLLFSNRADPAEAMRLIAEMERDGVPGN 153

Query: 200 NVTFSTLISCA-RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
             T + L+     +    + A +W  R+  +       TY  ++ A+ R+  V   F +Y
Sbjct: 154 ISTVNLLVGMGVEVGRCLDLASKWGLRLNGY-------TYKCLVQAHLRSREVWKGFEVY 206

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
           ++ R + +++D  A++ L+     AG  D    V+E+MK     P+  TY  L+   G+A
Sbjct: 207 EKMRRKGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDAYTYTILIRMSGKA 266

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
            +  +  ++ +EM   G   N   Y +++ A G+ +  ++ + +  +M E   + +   Y
Sbjct: 267 GKTTKFVSLLEEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQFTY 326

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           + +L + +  G      EI +      N +P    +S +I      G  SEA ++F  M 
Sbjct: 327 SIMLDVLSTGGQLHRLNEILDICSGCLN-RP---VYSYLIKALCKSGHASEAHSVFCRMW 382

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +  + + +   S+++    A++T + +  L+ +PE GIT D
Sbjct: 383 NSHEKGDRYAFVSMLEALCNAEKTTEAIDLLHMMPEKGITTD 424



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 129/293 (44%), Gaps = 18/293 (6%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G++ +  T+  L+     +    K  E +E+M   G   D   Y+ +++A  +AG V+ A
Sbjct: 178 GLRLNGYTYKCLVQAHLRSREVWKGFEVYEKMRRKGYKLDIFAYNMLLNALAKAGMVDQA 237

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
           + +++  +      D   ++ LI++ G AG     +++ EEM + G   N+I YN +++ 
Sbjct: 238 YQVFEDMKQNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIEA 297

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +G+ K   +   +  +M ++   PN  TY+ +L          D LS   ++      L 
Sbjct: 298 LGKNKMVDEAIFMLSKMIESDCRPNQFTYSIML----------DVLSTGGQLHRLNEILD 347

Query: 375 V-------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
           +        +Y+ L+      G+  EA  +F  M +S   + D + F SM+       K 
Sbjct: 348 ICSGCLNRPVYSYLIKALCKSGHASEAHSVFCRMWNSHE-KGDRYAFVSMLEALCNAEKT 406

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +EA  + + M E G   ++ +   +    GK ++   +    + +   G+ PD
Sbjct: 407 TEAIDLLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPD 459



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 96/199 (48%), Gaps = 8/199 (4%)

Query: 187 LFDDMLDRGVKPD----NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           L   M ++G+  D    N+ FS L    +++ + +     ++ M + G  PD  TY+ MI
Sbjct: 412 LLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSS----LYDTMRANGVVPDVFTYNIMI 467

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            ++GR G V+ A  L++   +   + D   ++++I   G  G+ D    ++++M+  G  
Sbjct: 468 SSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYD 527

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P++ TY+ L++  G++ +     +++ EM   G  PN  TY  LL    R     +    
Sbjct: 528 PDVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAHKF 587

Query: 363 YREMKEKGMQLSVTLYNTL 381
           Y  +K++G+      Y+ L
Sbjct: 588 YETLKQQGLTPDSITYSIL 606


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 149/319 (46%), Gaps = 36/319 (11%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + + Y   ++   K + L++A      M+ +G  PD  T++ +I    + N  ++A +
Sbjct: 8   SADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARK 67

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
           + E M +    P+ +TY+ +ID   + G V+ A  L  + R +                 
Sbjct: 68  FLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK----------------- 110

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                  C+            P  +TYN+L+  + +A+R  +   + +EM  +G  P+  
Sbjct: 111 -------CV------------PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIF 151

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +L+  + +++  +D L V+ ++  +G +  V  Y+ L+      G   EA ++F  M
Sbjct: 152 TYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRM 211

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             S +C P++ T++S+I+     GK+ EA  +   M E G  P++   T+L+  + K  R
Sbjct: 212 IKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR 271

Query: 462 TDDVVRALNRLPELGITPD 480
            DD    LN++   G+TPD
Sbjct: 272 LDDAYDLLNQMTRKGLTPD 290



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 138/292 (47%), Gaps = 5/292 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++  Y   +  F K +  D A R+F+ ++ RG +PD VT+S LI          +A++ F
Sbjct: 149 DIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLF 208

Query: 224 ERMPSFG-CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            RM   G C P+ +TY+S+I  + R G ++ A  L +R        D   ++TL+  +  
Sbjct: 209 GRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCK 268

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
               D   ++  +M   G+ P+++T+ +L+D + R  R      I  EM     SP   T
Sbjct: 269 LARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYT 328

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y ++L  Y RA   E+       ++E     +V  +N ++     V  + EA E+ E+ +
Sbjct: 329 YNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR 386

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML-EAGFEPNLFVLTSLI 453
               C PD   ++++I       KV EA  ++ +ML E G  PN    ++LI
Sbjct: 387 -RRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLI 437



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 154/336 (45%), Gaps = 16/336 (4%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K     + YN  +    K     +A  L ++M+  G  PD  T++TLI+    +   + A
Sbjct: 110 KCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDA 169

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLI 277
           +  FE++ + G  PD +TYS +ID   + G ++ A  L+ R   +     PN   +++LI
Sbjct: 170 LRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRM-IKSGSCMPNTVTYNSLI 228

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             +   G  D  +N+ E M   G  P+++TY  L++   +  R      +  +MT  GL+
Sbjct: 229 SGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLT 288

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE- 396
           P+  T+ SL+    R     D + +  EM+ K    +V  YNT+L         +EA + 
Sbjct: 289 PDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKF 348

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           + E+M    +C P+  +F+ MI       + SEA  +  E       P++ + T++I   
Sbjct: 349 MLEEM----DCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGL 404

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            + ++ D+  R   ++ E    P     GCL N +T
Sbjct: 405 CREKKVDEACRVYRKMLE---EP-----GCLPNSIT 432



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 15/246 (6%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           +S +V+ Y   M  F K   LD A  L + M  +G+ PD VTF++L+      N  + AV
Sbjct: 252 SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAV 311

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA--FGLYDRARNEKWRIDPN--AFSTL 276
                M    C P   TY++++D Y RA  +E A  F L      E+    PN  +F+ +
Sbjct: 312 HILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFML------EEMDCPPNVVSFNIM 365

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-G 335
           I+           + + EE +     P+++ Y  ++D + R K+  +   +Y++M +  G
Sbjct: 366 IRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPG 425

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
             PN  TY++L+     A      L   R   EKG   ++  YN L+         ++A 
Sbjct: 426 CLPNSITYSTLITGLCNA----GMLDRARGYIEKGCVPNIGTYNLLIDAFRKANRDEDAR 481

Query: 396 EIFEDM 401
           E+ +DM
Sbjct: 482 ELLDDM 487



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 96/204 (47%), Gaps = 7/204 (3%)

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           + +TY +L+  + + KR  Q      +M   G  P+  TY +++ A        +     
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
            EM  + +  +V  Y  L+      G  DEA  +   M+  + C P + T++S+I+    
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR--KKCVPTAVTYNSLISGLCK 127

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
             + SEA  +  EM+ +G  P++F  T+LI  + K++++DD +R   +L   G  PD   
Sbjct: 128 AERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVT 187

Query: 484 CGCLLNVMTQTPKEELGKLVECVE 507
             CL++ + +      G+L E ++
Sbjct: 188 YSCLIDGLCKE-----GRLKEAID 206


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 96/419 (22%), Positives = 189/419 (45%), Gaps = 42/419 (10%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y   +    K + +D+A+ +F  M+DRGVKPDN T++ LI          + V+  E
Sbjct: 196 VVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLE 255

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M + G +PD +TY+ ++D   + G    A   +D    +  + D   ++ L+  Y T G
Sbjct: 256 EMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKG 315

Query: 285 ------------------------NFDGC-----------LNVYEEMKAIGVKPNMITYN 309
                                   N   C           ++++ +M+  G+ P+++++ 
Sbjct: 316 ALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFG 375

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG--EDTLSVYREMK 367
            L+D + +  R       + +M + G++PN   ++SL+  YG    G  E    ++ E+ 
Sbjct: 376 ALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLV--YGLCTVGKWEKAEELFFEVL 433

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
           ++G+ +    +NTL+    + G   EA  +  D+      +P+  ++++++      G++
Sbjct: 434 DQGICVDAVFFNTLMCNLCNEGRVMEAQRLI-DLMIRVGVRPNVISYNTLVAGHCLTGRI 492

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
            EA  + + M+  G +PN F  T L++ Y KA+R DD       +   G+TP       +
Sbjct: 493 DEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTI 552

Query: 488 LNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKD 544
           L+ + QT +  E  +L   +  S +K       ++     + +F  EA ++F  + SKD
Sbjct: 553 LHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKD 611



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 140/294 (47%), Gaps = 4/294 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKA-ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           VI+ +  +K     + +D+A + L   M + G  PD V ++T+I+         KA   F
Sbjct: 125 VIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLF 184

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  P+ +TY+++ID   +A  V+ A G++ +  +   + D   ++ LI  Y + 
Sbjct: 185 LEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLST 244

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G +   + + EEM   G++P+ ITY  LLD + +  R  + +  +  M   G+ P+   Y
Sbjct: 245 GKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIY 304

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           A LL  Y       +  S    M   G+  +  ++N +    A     +EA  IF  M+ 
Sbjct: 305 AILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMR- 363

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            +   PD  +F ++I      G+V +A   FN+M+  G  PN+FV +SL+  YG
Sbjct: 364 QQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLV--YG 415



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 149/319 (46%), Gaps = 14/319 (4%)

Query: 181 LDKAERLFDDMLDRGVKPDNV----TFSTLISCARMNNLPNKAVEWFERMP---SFGCDP 233
           LD+A +LFD++L    +P +V       T++S A  ++   + V  F RM    S    P
Sbjct: 30  LDEALKLFDELL-HCARPASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAP 88

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV- 292
           +A TYS +I  + R G +E  F  +       WR++    S L+K    A   D   ++ 
Sbjct: 89  NACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDIL 148

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
              M   G  P+++ YN +++   R  +  +   ++ EM D G+ PN  TY +++    +
Sbjct: 149 LLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCK 208

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
           A+  +    V+++M ++G++     YN L+      G   E  ++ E+M S+   +PD  
Sbjct: 209 AQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEM-STHGLEPDCI 267

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T++ ++      G+  EA   F+ M   G +P++ +   L+  Y       ++   L+ +
Sbjct: 268 TYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLM 327

Query: 473 PELGITPDDRFCGCLLNVM 491
              G++P+ R    + N+M
Sbjct: 328 VGNGVSPNRR----IFNIM 342



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/455 (23%), Positives = 187/455 (41%), Gaps = 47/455 (10%)

Query: 118 DVFSVLRCLGDDFLEQDCV---IILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTM 172
           +V  +L  +    LE DC+   ++L+ +        A  +F +  +     +V +Y + +
Sbjct: 249 EVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILL 308

Query: 173 KVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCD 232
             +     L +     D M+  GV P+   F+ +        +  +A+  F +M   G  
Sbjct: 309 HGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLS 368

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           PD +++ ++IDA  + G V+ A   +++  NE    +   FS+L+    T G ++    +
Sbjct: 369 PDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEEL 428

Query: 293 YEE-----------------------------------MKAIGVKPNMITYNNLLDTMGR 317
           + E                                   M  +GV+PN+I+YN L+     
Sbjct: 429 FFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCL 488

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
             R  +   +   M  NGL PN  TY  LLR Y +AR  +D  S++REM  KG+   V  
Sbjct: 489 TGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVAT 548

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           YNT+L      G   EA E++ +M +S   + D +T++ ++        V EA  MF  +
Sbjct: 549 YNTILHGLFQTGRFSEANELYLNMINSRT-KCDIYTYNIILNGLCKNNFVDEAFKMFRRL 607

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQTPK 496
                + +      +I    K  R +D +     +   G+ PD      +  N++ +   
Sbjct: 608 CSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSL 667

Query: 497 EELGKLVECVEKSNSK-----LGYVVKLLLEEQDI 526
            E   L   +EKS +      L  +V+ LL   DI
Sbjct: 668 GEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGDI 702



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 153/372 (41%), Gaps = 74/372 (19%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           ++N+    + K   +++A  +F+ M  +G+ PD V+F  LI         + AV  F +M
Sbjct: 338 IFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQM 397

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            + G  P+   +SS++      G  E A  L+    ++   +D   F+TL+      G  
Sbjct: 398 INEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRV 457

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                + + M  +GV+PN+I+YN L+       R  +   +   M  NGL PN  TY  L
Sbjct: 458 MEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTIL 517

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG----------------- 389
           LR Y +AR  +D  S++REM  KG+   V  YNT+L      G                 
Sbjct: 518 LRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRT 577

Query: 390 ------------------YTDEAFEIFEDMKSSENCQPDSWTFSSMI------------- 418
                             + DEAF++F  +  S++ Q DS TF+ MI             
Sbjct: 578 KCDIYTYNIILNGLCKNNFVDEAFKMFRRL-CSKDPQLDSVTFNIMIGALLKGGRKEDAM 636

Query: 419 ----TICSC------------------RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
               TI +                    G + E + +F+ M ++G  PN  +L +L++  
Sbjct: 637 DLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVR-- 694

Query: 457 GKAQRTDDVVRA 468
            +     D+ RA
Sbjct: 695 -RLLHRGDISRA 705



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 110/231 (47%), Gaps = 8/231 (3%)

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA---KRPWQVKTIYKEMT---DN 334
           G+ G  D  L +++E+       ++  +N LL  + RA       +V +++  M     +
Sbjct: 26  GSLG-LDEALKLFDELLHCARPASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSS 84

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
            ++PN  TY+ L+  + R    E   + +  + + G +++V + + LL    D    DEA
Sbjct: 85  KVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEA 144

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            +I     S   C PD   ++++I      G+V +A  +F EM++ G  PN+   T++I 
Sbjct: 145 TDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVID 204

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 504
              KAQ  D       ++ + G+ PD+    CL++    T K +E+ +++E
Sbjct: 205 GLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLE 255


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 149/319 (46%), Gaps = 36/319 (11%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + + Y   ++   K + L++A      M+ +G  PD  T++ +I    + N  ++A +
Sbjct: 8   SADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARK 67

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
           + E M +    P+ +TY+ +ID   + G V+ A  L  + R +                 
Sbjct: 68  FLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK----------------- 110

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                  C+            P  +TYN+L+  + +A+R  +   + +EM  +G  P+  
Sbjct: 111 -------CV------------PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIF 151

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +L+  + +++  +D L V+ ++  +G +  V  Y+ L+      G   EA ++F  M
Sbjct: 152 TYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRM 211

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             S +C P++ T++S+I+     GK+ EA  +   M E G  P++   T+L+  + K  R
Sbjct: 212 IKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR 271

Query: 462 TDDVVRALNRLPELGITPD 480
            DD    LN++   G+TPD
Sbjct: 272 LDDAYDLLNQMTRKGLTPD 290



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 138/292 (47%), Gaps = 5/292 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++  Y   +  F K +  D A R+F+ ++ RG +PD VT+S LI          +A++ F
Sbjct: 149 DIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLF 208

Query: 224 ERMPSFG-CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            RM   G C P+ +TY+S+I  + R G ++ A  L +R        D   ++TL+  +  
Sbjct: 209 GRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCK 268

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
               D   ++  +M   G+ P+++T+ +L+D + R  R      I  EM     SP   T
Sbjct: 269 LARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYT 328

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y ++L  Y RA   E+       ++E     +V  +N ++     V  + EA E+ E+ +
Sbjct: 329 YNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR 386

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML-EAGFEPNLFVLTSLI 453
               C PD   ++++I       KV EA  ++ +ML E G  PN    ++L+
Sbjct: 387 -RRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLV 437



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 154/336 (45%), Gaps = 16/336 (4%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K     + YN  +    K     +A  L ++M+  G  PD  T++TLI+    +   + A
Sbjct: 110 KCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDA 169

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLI 277
           +  FE++ + G  PD +TYS +ID   + G ++ A  L+ R   +     PN   +++LI
Sbjct: 170 LRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRM-IKSGSCMPNTVTYNSLI 228

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             +   G  D  +N+ E M   G  P+++TY  L++   +  R      +  +MT  GL+
Sbjct: 229 SGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLT 288

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE- 396
           P+  T+ SL+    R     D + +  EM+ K    +V  YNT+L         +EA + 
Sbjct: 289 PDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKF 348

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           + E+M    +C P+  +F+ MI       + SEA  +  E       P++ + T++I   
Sbjct: 349 MLEEM----DCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGL 404

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            + ++ D+  R   ++ E    P     GCL N +T
Sbjct: 405 CREKKVDEACRVYRKMLE---EP-----GCLPNSIT 432



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 15/246 (6%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           +S +V+ Y   M  F K   LD A  L + M  +G+ PD VTF++L+      N  + AV
Sbjct: 252 SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAV 311

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA--FGLYDRARNEKWRIDPN--AFSTL 276
                M    C P   TY++++D Y RA  +E A  F L      E+    PN  +F+ +
Sbjct: 312 HILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFML------EEMDCPPNVVSFNIM 365

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-G 335
           I+           + + EE +     P+++ Y  ++D + R K+  +   +Y++M +  G
Sbjct: 366 IRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPG 425

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
             PN  TY++L+     A      L   R   EKG   ++  YN L+         ++A 
Sbjct: 426 CLPNSITYSTLVTGLCNA----GMLDRARGYIEKGCVPNIGTYNLLIDAFRKANRDEDAR 481

Query: 396 EIFEDM 401
           E+ +DM
Sbjct: 482 ELLDDM 487



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 2/186 (1%)

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           + +TY +L+  + + KR  Q      +M   G  P+  TY +++ A        +     
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
            EM  + +  +V  Y  L+      G  DEA  +   M+  + C P + T++S+I+    
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR--KKCVPTAVTYNSLISGLCK 127

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
             + SEA  +  EM+ +G  P++F  T+LI  + K++++DD +R   +L   G  PD   
Sbjct: 128 AERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVT 187

Query: 484 CGCLLN 489
             CL++
Sbjct: 188 YSCLID 193


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 159/324 (49%), Gaps = 15/324 (4%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPN----KA 219
           V L+N+ M  F K  D+  A  +FD++  RG++P  V+F+TLIS   R  N+      K+
Sbjct: 226 VYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKS 285

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           V   ER+      PD  TYS++I+   +   VE A GL+D         +   F+TLI  
Sbjct: 286 VMESERI-----SPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDG 340

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
               G  D  L  +E MK  G++P++ITYN L++ + R     + + +  EM  NG  P+
Sbjct: 341 QCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPD 400

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIF 398
             T+ +L+    +    +  L +   M E+G++L    +  L++ +C D G   +A  + 
Sbjct: 401 KITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRD-GRVRDAERML 459

Query: 399 EDMKSSENCQPDSWTFSSMITICSC-RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           +DM S+ + +PD  T+ +M+  C C +G V     +  EM   G  P +    +L+  + 
Sbjct: 460 KDMLSAGH-KPDDPTY-TMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFC 517

Query: 458 KAQRTDDVVRALNRLPELGITPDD 481
           K  +  +    L+ +  + + P+D
Sbjct: 518 KQGQMKNAKMLLHAMLNMEVVPND 541



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 136/274 (49%), Gaps = 7/274 (2%)

Query: 211 RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP 270
           ++N  P    E++  +  +G  P+   ++ ++  + + G+V  A  ++D       R   
Sbjct: 202 KLNQQPGHCWEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSV 261

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
            +F+TLI  Y  + N +    +   M++  + P++ TY+ L++ + +  R  +   ++ E
Sbjct: 262 VSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDE 321

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSV--YREMKEKGMQLSVTLYNTLL-AMCAD 387
           M + GL PN  T+ +L+   G+ ++G+  L++  +  MK++G++  +  YN L+  +C D
Sbjct: 322 MCEMGLVPNGVTFTTLID--GQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRD 379

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G   EA ++  +M  +   +PD  TF++++  C   G +  A  + + M+E G E +  
Sbjct: 380 -GDLKEARKLLNEMIGN-GFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDV 437

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
             T+LI    +  R  D  R L  +   G  PDD
Sbjct: 438 AFTALISGLCRDGRVRDAERMLKDMLSAGHKPDD 471



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 121/262 (46%), Gaps = 7/262 (2%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           + S +V  Y+  +    K   +++A  LFD+M + G+ P+ VTF+TLI     +   + A
Sbjct: 291 RISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLA 350

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           +  FE M   G  PD +TY+++I+   R G+++ A  L +      ++ D   F+TL+  
Sbjct: 351 LRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDG 410

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
               G+ D  L + + M   G++ + + +  L+  + R  R    + + K+M   G  P+
Sbjct: 411 CCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPD 470

Query: 340 WNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
             TY  ++  +   G  + G   L   +EM+  G    V  YN L+      G    A  
Sbjct: 471 DPTYTMVIDCFCKKGDVKMGAKLL---KEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKM 527

Query: 397 IFEDMKSSENCQPDSWTFSSMI 418
           +   M + E   P+  TF+ ++
Sbjct: 528 LLHAMLNME-VVPNDITFNILL 548


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 153/316 (48%), Gaps = 1/316 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ YN+ ++     + +++A   +  + +RG+K D+ T+  LI+    N   NKA+   E
Sbjct: 359 IVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILE 418

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
              + G D D   YSSM+    + G +E A  L  + +  + +++ + F++LI  Y  A 
Sbjct: 419 EAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAF 478

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +  ++V  EMK+    P +++YN +++ + +A+R        KEM + GL P+  TY+
Sbjct: 479 KLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYS 538

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L+    R    +  L+++ +   K ++  + ++N ++         D A EIF  M+  
Sbjct: 539 LLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQV 598

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            NC PD  T ++++      G   EA  +++ +LEAG +P++       +      R  D
Sbjct: 599 -NCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSD 657

Query: 465 VVRALNRLPELGITPD 480
            +  L    + GI P+
Sbjct: 658 AIEFLYDALDRGILPN 673



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 166/369 (44%), Gaps = 41/369 (11%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A L  TYF      S  +  YN+ +K+  K R  +K + L   M + G+ PD +++ TLI
Sbjct: 133 AELFFTYFQTA-GMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLI 191

Query: 208 -SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK- 265
            + A+  NL + AVE F+ M   G +PD + Y+ +ID + R G+   A  ++ R   E  
Sbjct: 192 NALAKSGNLLD-AVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESS 250

Query: 266 ---------------------------W-RIDPN-------AFSTLIKLYGTAGNFDGCL 290
                                      W R+  N        FS++I     AGNF+   
Sbjct: 251 VYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAE 310

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            V++EM   G+ P++ TYN +L  + R  +  +   ++  M+ N    N  +Y  L++  
Sbjct: 311 KVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCC-NIVSYNMLIQGL 369

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
              +  E  +  ++ + E+G++   T Y  L+      GY ++A  I E+ + +E    D
Sbjct: 370 LDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAE-NEGADLD 428

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
           ++ +SSM+     +G + +A  + ++M +   + N  V  SLI  Y +A + ++ +  L 
Sbjct: 429 TFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLR 488

Query: 471 RLPELGITP 479
            +      P
Sbjct: 489 EMKSKDCAP 497



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 152/327 (46%), Gaps = 43/327 (13%)

Query: 186 RLFDDM-LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS-FGCDPDALTYSSMID 243
           R+ D M   R    ++V  S + + A+ + +P++A+  F+ M   FGC+P   +++SM++
Sbjct: 64  RIVDLMRAQRCTCSEDVALSAIKAYAKCS-MPDQALNLFQNMVDIFGCNPGIRSFNSMLN 122

Query: 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
           A+                 + +WR +   F T    + TA                G+ P
Sbjct: 123 AF---------------IESNQWR-EAELFFT---YFQTA----------------GMSP 147

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           N+ TYN L+    + ++  + K +   M +NGL+P+  +Y +L+ A  ++    D + ++
Sbjct: 148 NLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELF 207

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
            EM  +G+   V  YN L+      G   +A EI++ + +  +  P   T++ MI     
Sbjct: 208 DEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCK 267

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
            GK+ E+  M+N M +    P+LF  +S+I    KA   +   +    + E G++PD R 
Sbjct: 268 LGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRT 327

Query: 484 CGCLLNVMTQTPKEELGKLVECVEKSN 510
              +L+ + +T     GKL +C E  N
Sbjct: 328 YNAMLSGLFRT-----GKLNKCFELWN 349



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 120/277 (43%), Gaps = 36/277 (12%)

Query: 171 TMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
            +K + KC   D+A  LF +M+D  G  P   +F+++++    +N   +A  +F    + 
Sbjct: 84  AIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAFIESNQWREAELFFTYFQTA 143

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
           G  P+  TY+ +I    +    E   GL           D  ++ TLI     +GN    
Sbjct: 144 GMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDA 203

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           + +++EM   GV P+++ YN L+D   R     +   I+K                    
Sbjct: 204 VELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWK-------------------- 243

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
                         R + E  +  SV  YN ++     +G  DE+ E++  MK +E   P
Sbjct: 244 --------------RLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEK-SP 288

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           D +TFSSMI   S  G  + AE +F EM+E+G  P++
Sbjct: 289 DLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDV 325



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 101/221 (45%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           ++N  +  + +   L++A  +  +M  +   P  V+++T+I+        + A    + M
Sbjct: 466 VFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEM 525

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G  PD +TYS +ID   R   V+MA  L+ +  N++ + D    + +I    TA   
Sbjct: 526 LEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKV 585

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  L ++ +M+ +   P+++T+N +++ + +A    +   I+  + + GL P+  +Y   
Sbjct: 586 DVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNIT 645

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            +         D +    +  ++G+  +   +N L+    D
Sbjct: 646 FKGLCSCARVSDAIEFLYDALDRGILPNAPTWNVLVRAVVD 686


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 154/311 (49%), Gaps = 3/311 (0%)

Query: 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFS 204
           PD A L L     K K   +V++YN  +    K + +D A  LF+ M  +G+KPD  T++
Sbjct: 231 PDLA-LNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYN 289

Query: 205 TLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
            LISC       + A      M     +PD + ++++IDA+ + G +  A  LYD     
Sbjct: 290 PLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKS 349

Query: 265 KWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
           K    D  A++TLIK +      +  + V+ EM   G+  N +TY  L+    +A+    
Sbjct: 350 KHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDN 409

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
            + ++K+M  +G+ P+  TY  LL         E  L V+  M+++ M+L +  Y T++ 
Sbjct: 410 AQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIE 469

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
                G  ++ +++F  + S +  +P+  T+++M++    +G   EA+A+F EM E G  
Sbjct: 470 ALCKAGKVEDGWDLFCSL-SLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPL 528

Query: 444 PNLFVLTSLIQ 454
           PN     +LI+
Sbjct: 529 PNSGTYNTLIR 539



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 176/400 (44%), Gaps = 37/400 (9%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALA+     KL     ++  N  +  F     + +A  L D M++ G +PD VTF+TL+ 
Sbjct: 129 ALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVH 188

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               +N  ++AV   ERM   GC PD +TY ++I+   + G  ++A  L ++    K   
Sbjct: 189 GLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEA 248

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   ++T+I       + D   +++ +M+  G+KP++ TYN L+                
Sbjct: 249 DVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLI---------------- 292

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
                           S L  YGR     D   +  +M EK +   +  +N L+      
Sbjct: 293 ----------------SCLCNYGRW---SDASRLLSDMLEKNINPDLVFFNALIDAFVKE 333

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G   EA +++++M  S++C PD   ++++I       +V E   +F EM + G   N   
Sbjct: 334 GKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 393

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV-ECVE 507
            T+LI  + +A+  D+      ++   G+ PD      LL+ +      E   +V E ++
Sbjct: 394 YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQ 453

Query: 508 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVK 546
           K + KL  V    + E   +    ++  +LF S+S K VK
Sbjct: 454 KRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVK 493



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 121/234 (51%), Gaps = 5/234 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +K F K + +++   +F +M  RG+  + VT++TLI         + A   F
Sbjct: 355 DVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 414

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           ++M S G  PD +TY+ ++D     GNVE A  +++  +    ++D   ++T+I+    A
Sbjct: 415 KQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKA 474

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +   +++  +   GVKPN++TY  ++    R     +   ++ EM ++G  PN  TY
Sbjct: 475 GKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTY 534

Query: 344 ASLLRAYGRARYGEDTLS--VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
            +L+RA  R R G++  S  + +EM+  G     + +  +  M  D G  D++F
Sbjct: 535 NTLIRA--RLRDGDEAASAELIKEMRSCGFAGDASTFGLVTNMLHD-GRLDKSF 585



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 152/315 (48%), Gaps = 11/315 (3%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMP 227
           N++ KV +  + LD A  LF DM+     P  V FS L+S  A+MN   +  +   E+M 
Sbjct: 45  NLSRKVLQDLK-LDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKF-DLVISLGEQMQ 102

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G   +  TYS  I+ + R   + +A  +  +     +       ++L+  +       
Sbjct: 103 NLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRIS 162

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + + ++M  +G +P+ +T+  L+  + +  +  +   + + M   G  P+  TY +++
Sbjct: 163 EAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVI 222

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +    +  L++  +M++  ++  V +YNT++       + D+AF++F  M+ ++  
Sbjct: 223 NGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKME-TKGI 281

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT----- 462
           +PD +T++ +I+     G+ S+A  + ++MLE    P+L    +LI  + K  +      
Sbjct: 282 KPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEK 341

Query: 463 --DDVVRALNRLPEL 475
             D++V++ +  P++
Sbjct: 342 LYDEMVKSKHCFPDV 356



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 134/318 (42%), Gaps = 13/318 (4%)

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           FS L+        FD  +++ E+M+ +G+  N+ TY+  ++   R  +      I  +M 
Sbjct: 78  FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMM 137

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             G  P+  T  SLL  +       + +++  +M E G Q     + TL+          
Sbjct: 138 KLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKAS 197

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           EA  + E M   + CQPD  T+ ++I     RG+   A  + N+M +   E ++ +  ++
Sbjct: 198 EAVALVERM-VVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTI 256

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPD----DRFCGCLLNVMTQTPKEELGKLVECVEK 508
           I    K +  DD     N++   GI PD    +    CL N    +    L  L + +EK
Sbjct: 257 IDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRL--LSDMLEK 314

Query: 509 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 568
           + +        L++    EG    EA +L++ + K       +C  D+     L++  CK
Sbjct: 315 NINPDLVFFNALIDAFVKEGKL-VEAEKLYDEMVKSK-----HCFPDVVAYNTLIKGFCK 368

Query: 569 LLELGLTLEVYTDIQSRS 586
              +   +EV+ ++  R 
Sbjct: 369 YKRVEEGMEVFREMSQRG 386



 Score = 43.5 bits (101), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 2/145 (1%)

Query: 137 IILNNMTNPDTAALALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+L+ + N      AL  F    K     +++ Y   ++   K   ++    LF  +  +
Sbjct: 431 ILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLK 490

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           GVKP+ VT++T++S      L  +A   F  M   G  P++ TY+++I A  R G+   +
Sbjct: 491 GVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAAS 550

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKL 279
             L    R+  +  D + F  +  +
Sbjct: 551 AELIKEMRSCGFAGDASTFGLVTNM 575


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 166/347 (47%), Gaps = 9/347 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEW 222
           +++ YN  +  + +  ++ +A  LF ++  RG+ P  VT++TLI    RM +L + A+  
Sbjct: 329 DLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDL-DVAMRL 387

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG- 281
            + M   G DPD  T++ ++  + + GN+ MA  L+D   N    + P+ F+ + ++ G 
Sbjct: 388 KDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRG--LQPDRFAYITRIVGE 445

Query: 282 -TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G+      + EEM A G  P++ITYN  +D + +     +   + K+M  NGL P+ 
Sbjct: 446 LKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDH 505

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY S++ A+  A +     +V+ EM  KG+  SV  Y  L+   A  G    A   F +
Sbjct: 506 VTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFE 565

Query: 401 MKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           M   +   P+  T++++I  +C  R K+ +A   F EM   G  PN +  T LI      
Sbjct: 566 M-HEKGVHPNVITYNALINGLCKVR-KMDQAYKFFTEMQAKGISPNKYTYTILINENCNL 623

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 506
               + +R    + +  I PD      LL  + +  K  + + +E V
Sbjct: 624 GHWQEALRLYKDMLDREIQPDSCTHSALLKHLNKDYKSHVVRHLENV 670



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 136/285 (47%), Gaps = 5/285 (1%)

Query: 173 KVFRKCRD----LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           +V R  RD    +D A  +++ M++ G++P  VT++T++          +A++   +M  
Sbjct: 159 RVLRLLRDRDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQK 218

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            GC P+ +TY+ +++    +G +E A  L          +    +  LI+ Y   G  D 
Sbjct: 219 MGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDE 278

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
              + EEM + G  P ++TYN ++  + +  R    + +   M +  L P+  +Y +L+ 
Sbjct: 279 ASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIY 338

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            Y R     +   ++ E++ +G+  SV  YNTL+     +G  D A  + ++M       
Sbjct: 339 GYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEM-IKHGPD 397

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           PD +TF+ ++      G +  A+ +F+EML  G +P+ F   + I
Sbjct: 398 PDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRI 442



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 103/440 (23%), Positives = 179/440 (40%), Gaps = 50/440 (11%)

Query: 100 NSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTN------PDTAALALT 153
           N +++L  D DS      +V++V+   G     +  V+  N M +          AL L 
Sbjct: 158 NRVLRLLRDRDSSIDVAREVYNVMVECGI----RPTVVTYNTMLDSFCKQGKVQEALQLL 213

Query: 154 YFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
               K+      + YNV +       +L++A+ L  +ML  G++    T+  LI      
Sbjct: 214 LQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEK 273

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
              ++A    E M S G  P  +TY++++    + G V  A  L D   N+    D  ++
Sbjct: 274 GQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSY 333

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-------------- 319
           +TLI  Y   GN      ++ E++  G+ P+++TYN L+D + R                
Sbjct: 334 NTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIK 393

Query: 320 --------------RPW-------QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
                         R +         K ++ EM + GL P  + +A + R  G  + G+ 
Sbjct: 394 HGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQP--DRFAYITRIVGELKLGDP 451

Query: 359 T--LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           +    +  EM  +G    +  YN  +     +G   EA E+ + M  +    PD  T++S
Sbjct: 452 SKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYN-GLVPDHVTYTS 510

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I      G + +A A+F EML  G  P++   T LI  Y    R    +     + E G
Sbjct: 511 IIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKG 570

Query: 477 ITPDDRFCGCLLNVMTQTPK 496
           + P+      L+N + +  K
Sbjct: 571 VHPNVITYNALINGLCKVRK 590


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 149/324 (45%), Gaps = 2/324 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  V++Y   +    K  ++  A+ LF  M   G+ P+  T+S L++      L  +  +
Sbjct: 190 SPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQ 249

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            +E M   G  P+A  Y+ +I  Y   G V+ AF ++   R +        ++ LI    
Sbjct: 250 MYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLC 309

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
               F   + +  ++  +G+ PN++TYN L++      +      ++ ++  +GLSP   
Sbjct: 310 RGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLV 369

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +L+  Y +       L + +EM+E+ +  S   Y  L+   A + YT++A E+   M
Sbjct: 370 TYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLM 429

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           + S    PD +T+S +I      G + EA  +F  + E   +PN  +  ++I  Y K   
Sbjct: 430 EKS-GLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGS 488

Query: 462 TDDVVRALNRLPELGITPD-DRFC 484
           +   +R LN +   G+ P+   FC
Sbjct: 489 SYRALRLLNEMVHSGMVPNVASFC 512



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 168/383 (43%), Gaps = 39/383 (10%)

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           + T+++    ++  ++A+ +   M   G  P + T+++++    R+   + A+ +++  +
Sbjct: 92  YDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNELK 151

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
           + K  +D  +F  +IK    AG F     +   ++  G+ PN++ Y  L+D   +     
Sbjct: 152 S-KVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVM 210

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
             K ++ +M   GL PN +TY+ L+  + +     +   +Y  MK  G+  +   YN L+
Sbjct: 211 LAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLI 270

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAG 441
           +   + G  D+AF++F +M+  +       T++ +I    CRGK   EA  + +++ + G
Sbjct: 271 SEYCNGGMVDKAFKVFAEMRE-KGIACGVMTYNILIG-GLCRGKKFGEAVKLVHKVNKVG 328

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
             PN+     LI  +    + D  VR  N+L   G++P       L+   ++   E L  
Sbjct: 329 LSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKV--ENLAG 386

Query: 502 LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLN 561
            ++ V++            +EE+ I                    K     LID    LN
Sbjct: 387 ALDLVKE------------MEERCIAPS-----------------KVTYTILIDAFARLN 417

Query: 562 LLENACKLLEL----GLTLEVYT 580
             E AC++  L    GL  +VYT
Sbjct: 418 YTEKACEMHSLMEKSGLVPDVYT 440



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 113/241 (46%), Gaps = 2/241 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L +  NK+  S  ++ YN+ +  F     +D A RLF+ +   G+ P  VT++TLI+
Sbjct: 317 AVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIA 376

Query: 209 C-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
             +++ NL   A++  + M      P  +TY+ +IDA+ R    E A  ++         
Sbjct: 377 GYSKVENLAG-ALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLV 435

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   +S LI      GN      +++ +  + ++PN + YN ++    +    ++   +
Sbjct: 436 PDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRL 495

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
             EM  +G+ PN  ++ S +    R    ++   +  +M   G++ SV+LY  +  +  D
Sbjct: 496 LNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMVHKVKGD 555

Query: 388 V 388
           V
Sbjct: 556 V 556



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 6/188 (3%)

Query: 306 ITYNNLLDTMGRA----KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           +TY  L DT+  A        Q  T    M   G  P  NT+ +L+    R+ Y +    
Sbjct: 86  LTYTPLYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWW 145

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           ++ E+K K + L    +  ++  C + GY  + F +   M       P+   ++++I  C
Sbjct: 146 IFNELKSK-VVLDAYSFGIMIKGCCEAGYFVKGFRLLA-MLEEFGLSPNVVIYTTLIDGC 203

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
              G V  A+ +F +M   G  PN    + L+  + K     +  +    +   GI P+ 
Sbjct: 204 CKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNA 263

Query: 482 RFCGCLLN 489
               CL++
Sbjct: 264 YAYNCLIS 271


>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1202

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 164/364 (45%), Gaps = 36/364 (9%)

Query: 165  VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
            +I +N  +K   K   ++ AE +  +M D+G  PD  TFS L      N+  + A+  +E
Sbjct: 657  LITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYE 716

Query: 225  -------RMPSFGCD----------------------------PDALTYSSMIDAYGRAG 249
                   +M ++ C                             P+ + Y++MID Y R G
Sbjct: 717  TAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKG 776

Query: 250  NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
            ++  A    D    +  + D  A++ LI+ +   G+ +       +MK  GV P++ TYN
Sbjct: 777  DLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYN 836

Query: 310  NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
             L+   GR     +   + KEM DNG  PN  +Y +L+    +     +   V R+M+++
Sbjct: 837  ILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDR 896

Query: 370  GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
            G+  +V +YN L+  C   G  ++AF   E+M   +  + +  T++++I   S  GK++E
Sbjct: 897  GVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEM-FKKGIELNLVTYNTLIDGLSMNGKLAE 955

Query: 430  AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
            AE M  E+   G +P++F   SLI  Y  A      +     +   GI P  +    L++
Sbjct: 956  AEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLLIS 1015

Query: 490  VMTQ 493
            + T+
Sbjct: 1016 LCTK 1019



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 154/355 (43%), Gaps = 40/355 (11%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           + S  V +YNV +    K R +  AE+LFD+ML R + P  +T++TLI     +  P K+
Sbjct: 582 RISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKS 641

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
            +  ERM +   +P  +T+++++    +AG VE A  +    +++ +  D   FS L   
Sbjct: 642 FKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDG 701

Query: 280 YGTAGNFDGCLNVYE------------------------------------EMKAIGVKP 303
           Y +    D  L VYE                                    EM A G+ P
Sbjct: 702 YSSNDKADAALGVYETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREM-AKGLVP 760

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           N + YN ++D   R       +     M   G+ P+   Y  L+R +      E+     
Sbjct: 761 NEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEV 820

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
            +MK KG+  SV  YN L+         D+ F++ ++M+ +    P+  ++ ++I  C C
Sbjct: 821 NKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDN-GTMPNVVSYGTLIN-CLC 878

Query: 424 RG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           +G K+ EA+ +  +M + G  PN+ +   LI       + +D  R    + + GI
Sbjct: 879 KGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGI 933



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 134/294 (45%), Gaps = 3/294 (1%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           +F ++L+   +P    +   I  A   +   K +E F RM      P    Y+ +ID   
Sbjct: 539 VFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLC 598

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           +   ++ A  L+D     +       ++TLI  Y   GN +    V E MKA  ++P++I
Sbjct: 599 KVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLI 658

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           T+N LL  + +A      + +  EM D G  P+  T++ L   Y      +  L VY   
Sbjct: 659 TFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETA 718

Query: 367 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
            + G++++    + LL A+C + G  ++A EI    + ++   P+   +++MI   S +G
Sbjct: 719 VDSGLKMNAYTCSILLNALCKE-GQIEKAEEIL-GREMAKGLVPNEVLYNTMIDGYSRKG 776

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
            +  A    + M + G +P+      LI+ + +    ++  + +N++   G++P
Sbjct: 777 DLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSP 830



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 145/310 (46%), Gaps = 10/310 (3%)

Query: 165  VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
            V+ Y   +    K   L +A+ +  DM DRGV P+   ++ LI           A  + E
Sbjct: 867  VVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSE 926

Query: 225  RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
             M   G + + +TY+++ID     G +  A  +      +  + D   +++LI  Y  AG
Sbjct: 927  EMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRFAG 986

Query: 285  NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            N   C+ +YEEMK  G+KP + TY +LL ++   +     K I+ EM+   L P+   Y 
Sbjct: 987  NVQRCIALYEEMKTSGIKPTLKTY-HLLISLCTKEGIELTKKIFGEMS---LQPDLLVYN 1042

Query: 345  SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
             +L  Y      +   ++ ++M EK + L  T YN+L+     VG   E   + ++MK+ 
Sbjct: 1043 GVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMKAR 1102

Query: 405  ENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFV---LTSLIQCYGKAQ 460
            E  +P++ T+  +I    C  K    A   + EM E G   ++ +   L S ++   +++
Sbjct: 1103 E-MEPEADTY-DIIVKGHCEMKDYMGAYVWYREMQEKGLLLDVCIGDELVSGLKEEWRSK 1160

Query: 461  RTDDVVRALN 470
              ++V+  +N
Sbjct: 1161 EAENVISEMN 1170



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/281 (19%), Positives = 120/281 (42%), Gaps = 3/281 (1%)

Query: 203 FSTLISCARMN--NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR 260
           FS L+    +N   + ++A + F  + + G  P + + + ++D   +     +   ++  
Sbjct: 483 FSYLLLSVLLNESKMISEAADLFFALRNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLN 542

Query: 261 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
                +R     +   I+      +    L ++  MK   + P +  YN L+D + + ++
Sbjct: 543 ILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQ 602

Query: 321 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 380
               + ++ EM    L P+  TY +L+  Y +    E +  V   MK   ++ S+  +NT
Sbjct: 603 MKDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNT 662

Query: 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
           LL      G  ++A  +  +MK  +   PD++TFS +    S   K   A  ++   +++
Sbjct: 663 LLKGLFKAGMVEDAENVLTEMK-DQGFVPDAFTFSILFDGYSSNDKADAALGVYETAVDS 721

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           G + N +  + L+    K  + +     L R    G+ P++
Sbjct: 722 GLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNE 762


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 150/314 (47%), Gaps = 2/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAER-LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           + + +  + K   LD+A   L+D M+  G +PD  TF+TLI       L   AV+    M
Sbjct: 347 FTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDM 406

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            + GC P+ +TY++++D + +   +E A  + +    + + ++   ++ L++     G  
Sbjct: 407 SANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKV 466

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              L++  EM   G KP++ T+N L+  + +  R      +Y++M  +G+  N  TY +L
Sbjct: 467 PKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTL 526

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           + A+ R    ++ L +  +M  +G  L    YN L+     +G T++A  +F++M   ++
Sbjct: 527 IHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEM-VRKD 585

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             P + + + +I      GKV  A  +  +M+  G  P++    SLI    K     +  
Sbjct: 586 LVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAF 645

Query: 467 RALNRLPELGITPD 480
              N+L   GI PD
Sbjct: 646 NLFNKLQAEGIQPD 659



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 175/394 (44%), Gaps = 52/394 (13%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVI----LYNVTMKVFRKCRDLDKAERLFDDML 192
           ++L+ + + +  ++A   F   L  SK VI     + V MK      ++D A  L  DM 
Sbjct: 178 VVLDILVSANCPSVAANVFYEML--SKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMT 235

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
             G  P++V + TLI      +  N+A++  E M   GC PD  T++ +I    R   + 
Sbjct: 236 KHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIH 295

Query: 253 MAFGLYDRARNEKW------------------RID-----------PN--AFSTLIKLYG 281
               L DR     +                  ++D           PN   F+ LI  Y 
Sbjct: 296 EGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFTILINGYV 355

Query: 282 TAGNFD-GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
            +G  D     +Y++M   G +P++ T+N L+  + +         +  +M+ NG +PN 
Sbjct: 356 KSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNL 415

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFE 399
            TY +LL  + +    E+   V  EM  KG +L++  YN LL A+C + G   +A ++  
Sbjct: 416 ITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKN-GKVPKALDMLG 474

Query: 400 DMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           +M S + C+PD +TF+++I  +C    K  +A A++ +ML  G   N     +LI  + +
Sbjct: 475 EM-SDKGCKPDIFTFNTLIFGLCKVDRK-EDALALYRDMLLDGVIANTVTYNTLIHAFLR 532

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
                + ++ +N         D  F GC L+ +T
Sbjct: 533 GGAIQEALKLVN---------DMLFRGCPLDEIT 557



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 133/314 (42%), Gaps = 6/314 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YNV + +         A  +F +ML +GV P   TF  ++    M N  + A      M 
Sbjct: 176 YNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMT 235

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P+++ Y ++I A  +   V  A  L +         D + F+ +I          
Sbjct: 236 KHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIH 295

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + + M   G  PN ITY  L++ + R  +  + + +  ++     +PN   +  L+
Sbjct: 296 EGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVP----TPNDVHFTILI 351

Query: 348 RAYGRA-RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
             Y ++ R  E    +Y +M + G +  V  +NTL+      G    A ++  DM S+  
Sbjct: 352 NGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDM-SANG 410

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
           C P+  T+++++     + ++ EA  + NEM   GFE N+     L++   K  +    +
Sbjct: 411 CTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKAL 470

Query: 467 RALNRLPELGITPD 480
             L  + + G  PD
Sbjct: 471 DMLGEMSDKGCKPD 484



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 130/270 (48%), Gaps = 6/270 (2%)

Query: 154 YFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA 210
           Y  N++ A      ++ YNV ++   K   + KA  +  +M D+G KPD  TF+TLI   
Sbjct: 436 YVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGL 495

Query: 211 RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP 270
              +    A+  +  M   G   + +TY+++I A+ R G ++ A  L +        +D 
Sbjct: 496 CKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDE 555

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
             ++ LIK +   G  +  L +++EM    + P+ I+ N L++ + R  +      + ++
Sbjct: 556 ITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRD 615

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           M   GL+P+  TY SL+    +     +  +++ +++ +G+Q     YNTL+      G 
Sbjct: 616 MIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGM 675

Query: 391 TDEAFEIFEDMKSSENC-QPDSWTFSSMIT 419
            D+A+ +   ++  EN   P+  T+  +++
Sbjct: 676 FDDAYLLL--LRGVENAFIPNDVTWYILVS 703



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 110/254 (43%), Gaps = 6/254 (2%)

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            Y  +ID  G A   ++   L  + + E      + F  ++K YG A        +  +M
Sbjct: 104 VYHVLIDKLGAAKEFKVIDKLLLQIKEEGIAFRESLFICIMKYYGRANLPGQATRMLLDM 163

Query: 297 KAI-GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           K +   +P   +YN +LD +  A  P     ++ EM   G+ P   T+  +++A      
Sbjct: 164 KGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNE 223

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            ++  S+ R+M + G   +  +Y TL+   +     +EA ++ E+M     C PD  TF+
Sbjct: 224 VDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEM-FLMGCLPDVDTFN 282

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
            +I       ++ E   + + ML  GF PN      L+    +  + D+    LN++P  
Sbjct: 283 DVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVP-- 340

Query: 476 GITPDDRFCGCLLN 489
             TP+D     L+N
Sbjct: 341 --TPNDVHFTILIN 352



 Score = 43.5 bits (101), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 33/174 (18%), Positives = 73/174 (41%), Gaps = 1/174 (0%)

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
           +  G    ++ Y  L+   G A+  +    +  ++KE+G+    +L+  ++         
Sbjct: 94  SQKGYCHTFDVYHVLIDKLGAAKEFKVIDKLLLQIKEEGIAFRESLFICIMKYYGRANLP 153

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
            +A  +  DMK    C+P   +++ ++ I       S A  +F EML  G  P ++    
Sbjct: 154 GQATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGV 213

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 504
           +++        D+    L  + + G  P+      L++ +++  +  E  KL+E
Sbjct: 214 VMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLE 267


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 174/369 (47%), Gaps = 13/369 (3%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +NV +    K  D+ +  +L D+M  +G  P+ VT++T+I+   +    +KAV   +R
Sbjct: 243 VTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDR 302

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M +  C P+ +TY ++I+   + G       L           +  A+STLI        
Sbjct: 303 MVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEK 362

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  + ++++M   G +PN++ Y+ L+D + R  +  + K I  EM + G +PN  TY+S
Sbjct: 363 SEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSS 422

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSS 404
           L++ + +    +  + V++EM +     +   Y+ L+  +C D G   EA  ++  M   
Sbjct: 423 LIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCED-GKLREAMMMWTHM-LG 480

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML--EAGFEPNLFVLTSLIQCYGKAQRT 462
              +PD   +SSMI      G V     +FNEML  E+  +P++     L++   K    
Sbjct: 481 RGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSI 540

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMT------QTPKEELGKLVECVEKSNSKLGY- 515
              +  LN + + G  PD   C   LN +       Q  +E L +LV  + K    +G  
Sbjct: 541 SHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAA 600

Query: 516 -VVKLLLEE 523
            +++++L++
Sbjct: 601 KIIEVMLQK 609



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 158/347 (45%), Gaps = 5/347 (1%)

Query: 138 ILNNMTNPDTAALALTYFT----NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           +LN +        AL ++      K   S  V+ +N+ +K   K   +D+A  +F +M  
Sbjct: 141 VLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAI 200

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           +  +PD  T+ TL+      +  ++AV   + M   GC P ++T++ +I+   + G++  
Sbjct: 201 QKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVR 260

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
              L D    +    +   ++T+I      G  D  +++ + M A    PN +TY  L++
Sbjct: 261 VTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLIN 320

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
            + +  R      +   + + G   N   Y++L+    +    E+ + ++++M EKG Q 
Sbjct: 321 GLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQP 380

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           ++ +Y+ L+      G  DEA EI  +M  ++ C P+++T+SS+I      G   +A  +
Sbjct: 381 NIVVYSALIDGLCREGKLDEAKEILCEM-VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRV 439

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           + EM +    PN    + LI    +  +  + +     +   G+ PD
Sbjct: 440 WKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPD 486



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/394 (20%), Positives = 173/394 (43%), Gaps = 7/394 (1%)

Query: 93  KSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTN---PDTAA 149
           KS D+ + SL++  A+      T   VF  ++     F+E++ +++         P+ A 
Sbjct: 61  KSGDSTFYSLIENYANSGD-FGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAI 119

Query: 150 LALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDML--DRGVKPDNVTFSTLI 207
                  ++ +  + V  +N  + V  +     +A   ++  +     + P+ ++F+ +I
Sbjct: 120 ELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVI 179

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                  L ++A+E F  M    C+PD  TY +++D   +   ++ A  L D  + E   
Sbjct: 180 KAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCF 239

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                F+ LI      G+      + + M   G  PN +TYN +++ +    +  +  ++
Sbjct: 240 PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSL 299

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
              M  +   PN  TY +L+    +     D + +   ++E+G   +   Y+TL++    
Sbjct: 300 LDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFK 359

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
              ++EA  +++ M   + CQP+   +S++I      GK+ EA+ +  EM+  G  PN F
Sbjct: 360 EEKSEEAMGLWKKM-VEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAF 418

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
             +SLI+ + K   +   +R    + +    P++
Sbjct: 419 TYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNE 452



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 131/295 (44%), Gaps = 4/295 (1%)

Query: 214 NLPNKAVEWFERM-PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN- 271
           +LP KA+E F RM   F C     +++S+++   + G    A   Y+     K  I PN 
Sbjct: 113 HLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNV 172

Query: 272 -AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
            +F+ +IK     G  D  + V+ EM     +P++ TY  L+D + +  R  +   +  E
Sbjct: 173 LSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDE 232

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           M   G  P+  T+  L+    +         +   M  KG   +   YNT++      G 
Sbjct: 233 MQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGK 292

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
            D+A  + + M +S+ C P+  T+ ++I     +G+  +   + + + E G   N +  +
Sbjct: 293 LDKAVSLLDRMVASK-CVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYS 351

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 505
           +LI    K +++++ +    ++ E G  P+      L++ + +  K +  K + C
Sbjct: 352 TLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILC 406



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 79/383 (20%), Positives = 160/383 (41%), Gaps = 18/383 (4%)

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           T+ S+I+ Y  +G+    F ++DR + E+       F  + + YG A   +  + ++  M
Sbjct: 66  TFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRM 125

Query: 297 -KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN--GLSPNWNTYASLLRAYGRA 353
                 +  + ++N++L+ + +     +    Y+        +SPN  ++  +++A  + 
Sbjct: 126 VDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKL 185

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
              +  + V+REM  +  +  V  Y TL+         DEA  + ++M+  E C P S T
Sbjct: 186 GLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQ-IEGCFPSSVT 244

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           F+ +I     +G +     + + M   G  PN     ++I       + D  V  L+R+ 
Sbjct: 245 FNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMV 304

Query: 474 ELGITPDDRFCGCLLNVMTQTPKEELGK--LVECVEKSNSKLGYVVKLLLEEQDIEGDFK 531
                P+D   G L+N + +  +   G   L    E+ +    Y    L     I G FK
Sbjct: 305 ASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTL-----ISGLFK 359

Query: 532 KEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWS 591
           +E +E    + K + +    C  ++ V   L++  C+  +L    E+  ++ ++  T  +
Sbjct: 360 EEKSEEAMGLWKKMVEK--GCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNA 417

Query: 592 LHLKSL-----SLGAALTALHIW 609
               SL       G +  A+ +W
Sbjct: 418 FTYSSLIKGFFKTGNSQKAIRVW 440


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 150/318 (47%), Gaps = 2/318 (0%)

Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
           D ++ +  +P  VT++TL++    + +   A+   E M   G  PD +T++S++D   + 
Sbjct: 462 DFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKE 521

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
             +  A  ++ RA     R +   +STLI         D  L +  +M  +G + N +TY
Sbjct: 522 QRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTY 581

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           + ++D + +  R      + ++M D G  P+  TY +L+  + + +   + + + REM E
Sbjct: 582 STVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLE 641

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G   SV  Y TL       G  DEA EI + M ++  C P++ T+SS++      G+V+
Sbjct: 642 AGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYM-AARGCAPNAITYSSIVDGLCKAGRVT 700

Query: 429 EAEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
           EA   F +M  +    P++   ++LI    KA R D+    L R+   G  PD      L
Sbjct: 701 EALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSIL 760

Query: 488 LNVMTQTPKEELGKLVEC 505
           +N +    + + G  + C
Sbjct: 761 INGLCDAGRIDTGLELFC 778



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 165/392 (42%), Gaps = 19/392 (4%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEW 222
           ++ YN  +    K   +  A  L + M++ G+ PD +TF++++   C     L    V  
Sbjct: 473 LVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNV-- 530

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F+R    GC P+ +TYS++ID   +   ++ A  L  +      R +   +ST++     
Sbjct: 531 FKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLK 590

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G  +  + V  +M+  G  P+ +TYN L+D   + +R  +   + +EM + G  P+  T
Sbjct: 591 VGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVT 650

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +L     R+   ++ + +   M  +G   +   Y++++      G   EA   FE M 
Sbjct: 651 YTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMA 710

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
             E   P    +S++I      G++ EA      M+ AG  P++   + LI     A R 
Sbjct: 711 RDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRI 770

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--------EELGKLVECVEKSNSKLG 514
           D  +     + E G   D      ++N      +        EE+      + K+    G
Sbjct: 771 DTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMK--THGIAKNTVTHG 828

Query: 515 YVVKLLLEEQDIEGDFKKEATELFNSISKDVK 546
            V+K L     I+     EA   F+SI +D +
Sbjct: 829 IVIKALCGNDRID-----EAVSYFHSIPEDCR 855



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 154/362 (42%), Gaps = 37/362 (10%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L  F  +   S +VI +N  +    K + +  A  +F   L+RG +P+ VT+STLI 
Sbjct: 492 ALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLID 551

Query: 209 --------------CARMNNLPNK---------------------AVEWFERMPSFGCDP 233
                          A+M  L  +                     AV    +M   GC P
Sbjct: 552 GLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLP 611

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           DA+TY+++ID + +   +  A GL        +      ++TL      +G FD  + + 
Sbjct: 612 DAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEIL 671

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT-DNGLSPNWNTYASLLRAYGR 352
           + M A G  PN ITY++++D + +A R  +    +++M  D  ++P+   Y++L+    +
Sbjct: 672 DYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCK 731

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
           A   ++       M   G    V  ++ L+    D G  D   E+F  M +   C+ D +
Sbjct: 732 AGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGM-AERGCKADIY 790

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
            +++MI     +G+ S A A+  EM   G   N      +I+      R D+ V   + +
Sbjct: 791 AYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSI 850

Query: 473 PE 474
           PE
Sbjct: 851 PE 852



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 150/328 (45%), Gaps = 34/328 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           E+I + + +K   K  +++ A R+ D+M+DRG  PD    + L+         ++A  +F
Sbjct: 105 ELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFF 164

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG-- 281
           +++   G  PDA+TY++M+D   +AG +E A G+  +   E +   P  F+  I + G  
Sbjct: 165 QQVLLIGFTPDAVTYNTMVDGLYKAGRLEAA-GMVLQLLAESFS-SPTVFTFTIAVDGLS 222

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA-KRPWQVKTIYKEMTDNGL---- 336
            AGN  G    ++ M   GV PN +TY+ L+D + +A K    +  +  + +  G+    
Sbjct: 223 KAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFS 282

Query: 337 ------------------------SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                                    PN   + SL+    +AR  ++   ++  MKE G  
Sbjct: 283 SLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCS 342

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
             V  YN LL     +    EA+   E M+ +E C P+  TFS++I      G+V++A  
Sbjct: 343 ADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWE 402

Query: 433 MFNEMLEA-GFEPNLFVLTSLIQCYGKA 459
           ++  M+   G  PN F    L++   KA
Sbjct: 403 VYERMVAVEGISPNRFTYAFLLEGLCKA 430



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 146/346 (42%), Gaps = 9/346 (2%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD--LDKAERLFDDMLDR 194
           +++N +        A T F   ++      +   +  +   CRD  +DK  +L ++M  R
Sbjct: 6   VLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGR 65

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G  P+ VT++TL++         +A    ERM + GC P+ +T+  +I    + G +E A
Sbjct: 66  GCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAA 125

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
           F + D   +  +  D    + L+      G  D     ++++  IG  P+ +TYN ++D 
Sbjct: 126 FRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDG 185

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           + +A R      + + + ++  SP   T+   +    +A         +  M + G+  +
Sbjct: 186 LYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPN 245

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
              Y+ L+      G  D A  +  D    +N Q   + FSS++       ++ EA  + 
Sbjct: 246 TVTYDALIDGLCKAGKLDIALGLLRD----KNSQAGMFAFSSLLHGLCQAHRLEEAIQLL 301

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             M      PN+    SL+    +A+R D+     + + E G + D
Sbjct: 302 KAM---PCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSAD 344



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 155/342 (45%), Gaps = 30/342 (8%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAV 220
           + + + YN  +    K   L+ A  +   + +    P   TF+  +   ++  NL   A 
Sbjct: 173 TPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTG-AY 231

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E+F+ MP  G  P+ +TY ++ID   +AG +++A GL    R++  +    AFS+L+   
Sbjct: 232 EFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLL---RDKNSQAGMFAFSSLLHGL 288

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
             A   +  + +   +KA+   PN++ +N+L++ + +A+R  +   ++  M ++G S + 
Sbjct: 289 CQAHRLEEAIQL---LKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADV 345

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKE-KGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
            TY  LL+   + R   +       M+  +G   +V  ++TL+    + G  ++A+E++E
Sbjct: 346 ITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYE 405

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF----------------- 442
            M + E   P+ +T++ ++      G     E  F +MLE  +                 
Sbjct: 406 RMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLM 465

Query: 443 ----EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
                P L    +L+    K+    D +  L  + E G++PD
Sbjct: 466 VQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPD 507



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 148/372 (39%), Gaps = 42/372 (11%)

Query: 138  ILNNMTNPDTAALALTYFTNKLK---ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
            I++ +        AL YF    +    +  VI Y+  +    K   +D+A    + M+  
Sbjct: 689  IVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRA 748

Query: 195  GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
            G  PD VTFS LI+        +  +E F  M   GC  D   Y++MI+AY   G    A
Sbjct: 749  GRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAA 808

Query: 255  FGLYDRARNEKW------------------RIDPN---------------AFSTLIKLYG 281
            + L +  +                      RID                 +++TLI    
Sbjct: 809  YALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEISYNTLITSLV 868

Query: 282  TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             +   +  L +   M A G  P+   Y  ++D + +A  P     + +EM   G SP+  
Sbjct: 869  ASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLR 928

Query: 342  TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            TY  ++    +A+        + EM  K ++    +Y++L+         D+A+++    
Sbjct: 929  TYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLR-- 986

Query: 402  KSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
              S   +P    +S+M+ ++C  RG   +A  +  EM     EP + + TSL   Y    
Sbjct: 987  --SSGIEPTITMYSTMVDSLCKNRG-TDKALEVIREMKSKNCEPGIHIWTSLATAYVAEG 1043

Query: 461  RTDDVVRALNRL 472
            R D+ V+ +N L
Sbjct: 1044 RVDEAVKLVNDL 1055



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 145/335 (43%), Gaps = 8/335 (2%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDML-DRGVKPDNVTFS 204
           D A   L Y   +   +   I Y+  +    K   + +A   F+ M  D  V P  + +S
Sbjct: 665 DEAVEILDYMAAR-GCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYS 723

Query: 205 TLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
            LI         ++A E+ ERM   G  PD +T+S +I+    AG ++    L+      
Sbjct: 724 ALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAER 783

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
             + D  A++ +I  Y   G F     + EEMK  G+  N +T+  ++  +    R  + 
Sbjct: 784 GCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEA 843

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
            + +  + ++    +  +Y +L+ +   +R  E  L + R M   G       Y T++  
Sbjct: 844 VSYFHSIPED--CRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDG 901

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
               G  + A ++ ++M+S  +  PD  T++ MI+  S   ++  A   F EML    +P
Sbjct: 902 LFKAGSPEVAAKLLQEMRSRGH-SPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKP 960

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           +  V +SLI  + KA + DD   A   L   GI P
Sbjct: 961 DAIVYSSLIDAFCKADKVDD---AWKLLRSSGIEP 992



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 112/248 (45%), Gaps = 7/248 (2%)

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           +TY+ +I+   +AG V  AF  + +A    +R     +ST+I         D    + EE
Sbjct: 2   VTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEE 61

Query: 296 MKAIGVKPNMITYNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           M   G  PN +TYN L++ +   GRAK  +   ++ + M  NG  P   T+  +++   +
Sbjct: 62  MAGRGCAPNAVTYNTLVNALLGQGRAKEAF---SLLERMAANGCPPELITFGLIIKGLCK 118

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
               E    V  EM ++G    V ++  LL    ++G  DEA+  F+ +       PD+ 
Sbjct: 119 EGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLI-GFTPDAV 177

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T+++M+      G++  A  +   + E+   P +F  T  +    KA          + +
Sbjct: 178 TYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSM 237

Query: 473 PELGITPD 480
           P+ G++P+
Sbjct: 238 PQTGVSPN 245



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 135/312 (43%), Gaps = 10/312 (3%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ YNV +    K   +  A   F   +  G +P  VT+ST+I     +N  +K  +  E
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   GC P+A+TY+++++A    G  + AF L +R        +   F  +IK     G
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEG 120

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDT---MGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             +    V +EM   G  P++  +  LL     +GR    W     ++++   G +P+  
Sbjct: 121 EIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAW---FFFQQVLLIGFTPDAV 177

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +++    +A   E    V + + E     +V  +   +   +  G    A+E F+ M
Sbjct: 178 TYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSM 237

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             +    P++ T+ ++I      GK+  A  +     +   +  +F  +SL+    +A R
Sbjct: 238 PQT-GVSPNTVTYDALIDGLCKAGKLDIALGLLR---DKNSQAGMFAFSSLLHGLCQAHR 293

Query: 462 TDDVVRALNRLP 473
            ++ ++ L  +P
Sbjct: 294 LEEAIQLLKAMP 305



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 118/256 (46%), Gaps = 5/256 (1%)

Query: 147  TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
            +AA AL         +K  + + + +K       +D+A   F  + +     D ++++TL
Sbjct: 806  SAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDC--RDEISYNTL 863

Query: 207  ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
            I+    +    +A+E    M + G  PDA  Y +++D   +AG+ E+A  L    R+   
Sbjct: 864  ITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGH 923

Query: 267  RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
              D   ++ +I     A       + +EEM    +KP+ I Y++L+D   +A +   V  
Sbjct: 924  SPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADK---VDD 980

Query: 327  IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
             +K +  +G+ P    Y++++ +  + R  +  L V REMK K  +  + ++ +L     
Sbjct: 981  AWKLLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYV 1040

Query: 387  DVGYTDEAFEIFEDMK 402
              G  DEA ++  D++
Sbjct: 1041 AEGRVDEAVKLVNDLQ 1056



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 96/214 (44%), Gaps = 3/214 (1%)

Query: 137  IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV 196
            I++  +   D    A++YF +  +  ++ I YN  +      R  ++A  L   M+  G 
Sbjct: 829  IVIKALCGNDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGG 888

Query: 197  KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256
             PD   + T++        P  A +  + M S G  PD  TY+ MI    +A  + +A  
Sbjct: 889  SPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACD 948

Query: 257  LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
             ++    +  + D   +S+LI  +  A   D   + ++ +++ G++P +  Y+ ++D++ 
Sbjct: 949  YFEEMLRKNLKPDAIVYSSLIDAFCKADKVD---DAWKLLRSSGIEPTITMYSTMVDSLC 1005

Query: 317  RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            + +   +   + +EM      P  + + SL  AY
Sbjct: 1006 KNRGTDKALEVIREMKSKNCEPGIHIWTSLATAY 1039


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 148/324 (45%), Gaps = 2/324 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  V++Y   +    K  D+  A+ LF  M   G+ P+  T+S L++      L  +  +
Sbjct: 190 SPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQ 249

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            +E M   G  P+A  Y+ +I  Y   G V+ AF ++   R +        ++ LI    
Sbjct: 250 MYENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLC 309

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
               F   + +  ++  +G+ PN++TYN L++      +      ++ ++  +GLSP   
Sbjct: 310 RGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLV 369

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +L+  Y +       L + +EM+E+ +  S   Y  L+   A + YTD+A E+   M
Sbjct: 370 TYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEMHSLM 429

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           + S    PD +T+S +I      G + EA   F  + E   +PN  +  ++I  Y K   
Sbjct: 430 EKS-GLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGS 488

Query: 462 TDDVVRALNRLPELGITPD-DRFC 484
           +   +R LN +   G+ P+   FC
Sbjct: 489 SYRALRLLNEMVHSGMVPNVASFC 512



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 129/271 (47%), Gaps = 3/271 (1%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           C D  +DKA ++F +M ++G+    +T++ LI          +AV+   ++   G  P+ 
Sbjct: 274 CNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNI 333

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           +TY+ +I+ +   G ++ A  L+++ ++         ++TLI  Y    N  G L++ +E
Sbjct: 334 VTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKE 393

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M+   +  + +TY  L+D   R     +   ++  M  +GL P+  TY+ L+        
Sbjct: 394 MEERCIARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGN 453

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            ++    ++ + E  +Q +  +YNT++      G +  A  +  +M  S    P+  +F 
Sbjct: 454 MKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHS-GMVPNVASFC 512

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           S + +     K  EAE +  +M+ +G +P++
Sbjct: 513 STMGLLCRDEKWKEAELLLGQMINSGLKPSV 543



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 127/266 (47%), Gaps = 8/266 (3%)

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           ++A+ +   M   G  P + T+++++    R+   + A+ +++  ++   ++  NA+S  
Sbjct: 106 DQALTFLHHMIHEGHAPLSNTFNNLLCLLIRSNYFDKAWWIFNVLKS---KVVLNAYSFG 162

Query: 277 IKLYGT--AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
           I + G   AG F     +   ++  G+ PN++ Y  L+D   +       K ++ +M   
Sbjct: 163 IMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRL 222

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           GL PN +TY+ L+  + +     +   +Y  M   G+  +   YN L++   + G  D+A
Sbjct: 223 GLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLISEYCNDGMVDKA 282

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           F++F +M+  +       T++ +I    CRG K  EA  + +++ + G  PN+     LI
Sbjct: 283 FKVFAEMR-EKGIACGVMTYNILIG-GLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILI 340

Query: 454 QCYGKAQRTDDVVRALNRLPELGITP 479
             +    + D  VR  N+L   G++P
Sbjct: 341 NGFCDVGKMDTAVRLFNQLKSSGLSP 366



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 2/241 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L +  NK+  S  ++ YN+ +  F     +D A RLF+ +   G+ P  VT++TLI+
Sbjct: 317 AVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIA 376

Query: 209 C-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
             +++ NL   A++  + M         +TY+ +IDA+ R    + A  ++         
Sbjct: 377 GYSKVENLAG-ALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGLV 435

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   +S LI      GN       ++ +  + ++PN + YN ++    +    ++   +
Sbjct: 436 PDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRL 495

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
             EM  +G+ PN  ++ S +    R    ++   +  +M   G++ SV+LY  +  +  D
Sbjct: 496 LNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMVHKVKGD 555

Query: 388 V 388
           V
Sbjct: 556 V 556


>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 952

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 144/290 (49%), Gaps = 13/290 (4%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC---ARMNNLP---- 216
           +V+ Y   +  F K  D DKA   + +MLDRG+ PD VT+S++I+     +  + P    
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHC 254

Query: 217 --NKAVE---WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
              + +E    F+ M   G  PD +TYS++ID Y  AG ++ A  L     +   + +  
Sbjct: 255 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTV 314

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
            +STLI  Y      +  L +++EM++ GV P++ITYN +L  + + +R    K +Y  +
Sbjct: 315 TYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI 374

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
           T++G     +TY  +L    + +  +D L +++ +    ++L    +N ++     VG  
Sbjct: 375 TESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRN 434

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           DEA ++F    SS    P+ WT+  M      +G + E + +F  M + G
Sbjct: 435 DEAKDLFVAF-SSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 483



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 150/340 (44%), Gaps = 23/340 (6%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFS-TLISCARMNNLPNKAVEWFERMPSFGCD---PDALT 237
           + A  +FD++L RG        +  L   AR +  P  AV  + RM   G D   PD  T
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARHS--PAAAVSRYNRMARAGADEVTPDLCT 89

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEM 296
           Y  +I    RAG +++ F        + +R++   F+ L+K L       D    V   M
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN---GLSPNWNTYASLLRAYGRA 353
             +G  PN+ +YNNLL+ +    R  +   +   M D+   G  P+  +Y +++  + + 
Sbjct: 150 TELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKE 209

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLA-MCADV-----------GYTDEAFEIFEDM 401
              +   S Y EM ++G+   V  Y++++A +C              G   E+ ++F D+
Sbjct: 210 GDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLF-DL 268

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
                 +PD  T+S++I      GK+ EA  + + M+  G +PN    ++LI  Y K  R
Sbjct: 269 MVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISR 328

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
            +D +     +   G++PD      +L  + QT +    K
Sbjct: 329 MEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 368



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 125/263 (47%), Gaps = 13/263 (4%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA---------- 244
           G  PD V+++T+I+        +KA   +  M   G  PD +TYSS+I A          
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKP 250

Query: 245 --YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
             + + G V  +  L+D       + D   +STLI  Y  AG  D  + +   M ++G+K
Sbjct: 251 WSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLK 310

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           PN +TY+ L++   +  R      ++KEM  +G+SP+  TY  +L+   + R       +
Sbjct: 311 PNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 370

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
           Y  + E G Q+ ++ YN +L        TD+A ++F+++    + + ++ TF+ MI    
Sbjct: 371 YVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNL-CLMDLKLEARTFNIMIDALL 429

Query: 423 CRGKVSEAEAMFNEMLEAGFEPN 445
             G+  EA+ +F      G  PN
Sbjct: 430 KVGRNDEAKDLFVAFSSNGLVPN 452



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/383 (19%), Positives = 174/383 (45%), Gaps = 20/383 (5%)

Query: 178 CR--DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW-FERMPSFGCDPD 234
           CR   LD       +++ +G + + +TF+ L+     +   + A++    RM   GC P+
Sbjct: 98  CRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPN 157

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN---AFSTLIKLYGTAGNFDGCLN 291
             +Y+++++        + A  L     +++    P    +++T+I  +   G+ D   +
Sbjct: 158 VFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYS 217

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAK---RPW---------QVKTIYKEMTDNGLSPN 339
            Y EM   G+ P+++TY++++  + + +   +PW         + + ++  M   G+ P+
Sbjct: 218 TYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPD 277

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY++L+  Y  A   ++ + +   M   G++ +   Y+TL+     +   ++A  +F+
Sbjct: 278 IITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFK 337

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +M+SS    PD  T++ ++       + + A+ ++  + E+G +  L     ++    K 
Sbjct: 338 EMESS-GVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKN 396

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL-GYVVK 518
           + TDD ++    L  + +  + R    +++ + +  + +  K +     SN  +  Y   
Sbjct: 397 KLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 456

Query: 519 LLLEEQDIEGDFKKEATELFNSI 541
            L+ E  I     +E  +LF S+
Sbjct: 457 RLMAENIIGQGLLEELDQLFLSM 479



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 96/192 (50%), Gaps = 12/192 (6%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS----CARMN 213
           ++    ++I Y+  +  +     +D+A +L   M+  G+KP+ VT+STLI+     +RM 
Sbjct: 271 RIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRME 330

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           +    A+  F+ M S G  PD +TY+ ++    +      A  LY R      +I+ + +
Sbjct: 331 D----ALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTY 386

Query: 274 STLIKLYGTAGN--FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           +  I L+G   N   D  L +++ +  + +K    T+N ++D + +  R  + K ++   
Sbjct: 387 N--IILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 444

Query: 332 TDNGLSPNWNTY 343
           + NGL PN+ TY
Sbjct: 445 SSNGLVPNYWTY 456


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 151/322 (46%), Gaps = 5/322 (1%)

Query: 178 CR--DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           CR  DL +A+ +FD+M  +G+ P  + ++ LI     +N   +A      M   G  P+ 
Sbjct: 193 CRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNV 252

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
            TY++++D Y +  N + A  LY     E    D   F  LI      G      N++  
Sbjct: 253 YTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVN 312

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M    V PN+  YN+L+D   +     +   ++ E+    +SP+  TY+ L+R       
Sbjct: 313 MIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSR 372

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            E+  +++ +M ++G+  +   YN+L+  C   G  D+A EI   M +    +P+  TFS
Sbjct: 373 TEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQM-TENGVEPNVITFS 431

Query: 416 SMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           ++I   C  R  +  A  +++EM+     P++   T++I  + K     + ++  + + +
Sbjct: 432 TLIDGYCKIR-NLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLD 490

Query: 475 LGITPDDRFCGCLLNVMTQTPK 496
            GITP+     CLL+ + +  K
Sbjct: 491 NGITPNCYTISCLLDGLCKDGK 512



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 153/341 (44%), Gaps = 30/341 (8%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+++ +        A   F N +K S    + +YN  +  + K  D+ +A  LF ++   
Sbjct: 292 ILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERF 351

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
            V PD  T+S LI      +   +A   FE+M   G   +++TY+S+ID   + G ++ A
Sbjct: 352 EVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKA 411

Query: 255 FGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
             +  +       ++PN   FSTLI  Y    N    + +Y EM    + P+++TY  ++
Sbjct: 412 LEICSQMTENG--VEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMI 469

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE---- 368
           D   +     +   +Y +M DNG++PN  T + LL    +     D L ++ E  E    
Sbjct: 470 DGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTP 529

Query: 369 ------KGMQLSVT---LYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
                  G + S+T    Y  L+  +C D G   +A ++F DM+     QPD   +  M+
Sbjct: 530 RCNVDAGGSKPSLTNHVAYTALIHGLCQD-GQFSKAVKLFSDMRRY-GLQPDEVIYVVML 587

Query: 419 TICSCRG--KVSEAEAMFN-EMLEAGFEPNLFVLTSLIQCY 456
                RG  +V     M + +ML+ G  PN  V   L +CY
Sbjct: 588 -----RGLFQVKYILMMLHADMLKFGVIPNSAVHVILCECY 623



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/311 (20%), Positives = 132/311 (42%), Gaps = 62/311 (19%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI- 207
           A+AL     + + S +V  Y++ ++        ++A  +F+ M   G+  ++VT+++LI 
Sbjct: 341 AMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLID 400

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
            C +   + +KA+E   +M   G +P+ +T+S++ID Y +  N++ A G+Y     +   
Sbjct: 401 GCCKEGKM-DKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLS 459

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQV 324
            D   ++ +I  +   G+    L +Y +M   G+ PN  T + LLD +   G+     ++
Sbjct: 460 PDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALEL 519

Query: 325 KT---------------------------------------------IYKEMTDNGLSPN 339
            T                                             ++ +M   GL P+
Sbjct: 520 FTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPD 579

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
              Y  +LR   + +Y    + ++ +M + G+ +  +  + +L  C    Y +  F    
Sbjct: 580 EVIYVVMLRGLFQVKY--ILMMLHADMLKFGV-IPNSAVHVILCEC----YQESGF---- 628

Query: 400 DMKSSENCQPD 410
            +KS++NC  D
Sbjct: 629 -LKSAQNCSKD 638


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 159/357 (44%), Gaps = 43/357 (12%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A  +VI YNV +  + K  ++D A ++ D M    V PD VT++T++     +    +A+
Sbjct: 180 AVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAM 236

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E  +R     C PD +TY+ +I+A  +   V  A  L D  RN+  + D   ++ LI   
Sbjct: 237 EVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGI 296

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW------------------ 322
              G  D  +     M + G +PN+IT+N +L +M    R W                  
Sbjct: 297 CKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR-WMDAEKLLSDMLRKGCSPS 355

Query: 323 ------------------QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
                             +   I ++M  +G +PN  +Y  LL  + + +  +  +    
Sbjct: 356 VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLD 415

Query: 365 EMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
            M  +G    +  YNTLL A+C D G  D A EI   + SS+ C P   T++++I   S 
Sbjct: 416 IMVSRGCYPDIVTYNTLLTALCKD-GKVDVAVEILNQL-SSKGCSPVLITYNTVIDGLSK 473

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            GK   A  + +EM   G +P++   +SL+    +  + D+ ++  + L  LGI P+
Sbjct: 474 VGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPN 530



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 132/278 (47%), Gaps = 1/278 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI +N+ ++          AE+L  DML +G  P  VTF+ LI+      L  +A++  E
Sbjct: 321 VITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILE 380

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +MP  GC P++L+Y+ ++  + +   ++ A    D   +     D   ++TL+      G
Sbjct: 381 KMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDG 440

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  + +  ++ + G  P +ITYN ++D + +  +  +   +  EM   GL P+  TY+
Sbjct: 441 KVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYS 500

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL+    R    ++ +  + +++  G++ +   YN+++        TD A +    M  S
Sbjct: 501 SLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYM-IS 559

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
           + C+P   T++ +I   +  G   EA  + NE+   G 
Sbjct: 560 KRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 597



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 141/335 (42%), Gaps = 10/335 (2%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           +L+   +  + M+ RG  PD +  ++LI          KA    E +   G  PD +TY+
Sbjct: 129 ELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYN 188

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMK 297
            +I  Y ++G ++ A  + DR       + P+   ++T+++    +G     + V +   
Sbjct: 189 VLISGYCKSGEIDNALQVLDR-----MNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 243

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
                P++ITY  L++   +     Q   +  EM + G  P+  TY  L+    +    +
Sbjct: 244 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 303

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           + +     M   G Q +V  +N +L      G   +A ++  DM   + C P   TF+ +
Sbjct: 304 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDM-LRKGCSPSVVTFNIL 362

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I     +G +  A  +  +M   G  PN      L+  + K ++ D  +  L+ +   G 
Sbjct: 363 INFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGC 422

Query: 478 TPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSK 512
            PD      LL  + +  K ++   VE + + +SK
Sbjct: 423 YPDIVTYNTLLTALCKDGKVDVA--VEILNQLSSK 455



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 76/156 (48%), Gaps = 1/156 (0%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A   L   ++K   S  +I YN  +    K    ++A +L D+M  +G+KPD +T+S+
Sbjct: 443 DVAVEILNQLSSK-GCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSS 501

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           L+S        ++A+++F  +   G  P+A+TY+S++    ++   + A        +++
Sbjct: 502 LVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKR 561

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
            +     ++ LI+     G     L++  E+ + G+
Sbjct: 562 CKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 597


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 152/337 (45%), Gaps = 5/337 (1%)

Query: 146 DTAALALTYFTNKLKASK----EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNV 201
           D   L L    N    S+    +V  +N+ +K   +   +  A  + ++M   G+ PD  
Sbjct: 188 DGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEK 247

Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
           TF+TL+         N A+   E+M + GC    +T + ++  Y + G +E      D  
Sbjct: 248 TFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEM 307

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
            NE +R D   F++L+      G+    L + + M   G  P++ TYN+L+  + +    
Sbjct: 308 SNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEV 367

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
            +   I  +M     SPN  TY +L+    +    E+   + R +  KG+   V  +N+L
Sbjct: 368 EEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSL 427

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           +           A E+FE+MK ++ C PD +T++ +I     RG++ EA ++  EM  +G
Sbjct: 428 IQGLCLTNNHRLAMELFEEMK-TKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSG 486

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
              N+    +LI  + K +R ++     + +   GI+
Sbjct: 487 CSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGIS 523



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 151/317 (47%), Gaps = 1/317 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++  YN  +    K  ++++A  + + M+ R   P+ VT++TLIS     N   +A E  
Sbjct: 350 DIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELA 409

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             + S G  PD  T++S+I       N  +A  L++  + +    D   ++ LI    + 
Sbjct: 410 RVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSR 469

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +  L++ +EM++ G   N++TYN L+D   + KR  + + I+ EM   G+S N  TY
Sbjct: 470 GRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTY 529

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+    + R  E+   +  +M  +G++     YN+LL      G   +A +I + M +
Sbjct: 530 NTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTM-T 588

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S  C+PDS T+ ++I   S  G+V  A  +   +   G          +I+   + +RT 
Sbjct: 589 SNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTS 648

Query: 464 DVVRALNRLPELGITPD 480
           + VR    + E G  PD
Sbjct: 649 EAVRLFREMMEKGDPPD 665



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 103/413 (24%), Positives = 185/413 (44%), Gaps = 14/413 (3%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWF-ER 225
           + + ++ + K    D+A  + D M +  G+K D  T++ L++     N   K VE    R
Sbjct: 143 FLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGN-KLKLVEIVNSR 201

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S G  PD  T++ +I A  RA  +  A  + +   +     D   F+TL++ +   GN
Sbjct: 202 MVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGN 261

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +G L + E+M A G   + +T N L+    +  R  +V +   EM++ G  P+  T+ S
Sbjct: 262 MNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNS 321

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+    R  + +  L +   M ++G    +  YN+L+     +G  +EA EI   M    
Sbjct: 322 LVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQM-ILR 380

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           +  P++ T++++I+      +V EA  +   +   G  P++    SLIQ           
Sbjct: 381 DFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLA 440

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQ 524
           +     +   G  PD+     L++ +    + EE   L++ +E S      V    L + 
Sbjct: 441 MELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDG 500

Query: 525 DIEGDFKKEATELFN-----SISKDVKKAYCNCLID-LCVNLNLLENACKLLE 571
             +    +EA E+F+      IS++V     N LID LC N   +E A +L++
Sbjct: 501 FCKNKRIEEAEEIFDEMELQGISRNV--VTYNTLIDGLCKN-RRVEEAAQLMD 550



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 102/211 (48%), Gaps = 3/211 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S+ V+ YN  +  F K + +++AE +FD+M  +G+  + VT++TLI     N    +A +
Sbjct: 488 SRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQ 547

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             ++M   G  PD  TY+S++  + RAG+++ A  +     +     D   + TLI    
Sbjct: 548 LMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLS 607

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AG  +    +   ++  G+     TYN ++  + R KR  +   +++EM + G  P+  
Sbjct: 608 KAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAV 667

Query: 342 TYASLLRAY--GRARYGEDTLSVYREMKEKG 370
           TY  + R    G    GE  +    EM +KG
Sbjct: 668 TYKVVFRGLCSGGGPIGE-AVDFLVEMTDKG 697



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 89/439 (20%), Positives = 164/439 (37%), Gaps = 78/439 (17%)

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCD--------PDALTYSSMIDAYGRAGNVEMA 254
           FS LIS    ++   +AV      PSF           P   T   + DA  R  + +  
Sbjct: 34  FSKLISFTSTHHHDQQAVS-----PSFSTLSPSPTTQLPQNFTPKQLRDALRRQSDEDSI 88

Query: 255 FGLYDRARNEKWRIDPNA-FSTLIKLYGTAGNFDGCLNVYEEMK---------------- 297
             L D A  +   +  +  +  +++  G  G+F     V +EMK                
Sbjct: 89  LDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIE 148

Query: 298 --------------------AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
                                 G+K +  TYN LL+ +    +   V+ +   M   G+ 
Sbjct: 149 SYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIK 208

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P+  T+  L++A  RA      + +  EM   G+      + TL+    + G  + A  I
Sbjct: 209 PDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRI 268

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            E M ++  C   + T + ++      G++ E  +  +EM   GF P+ F   SL+    
Sbjct: 269 REQMVAA-GCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLC 327

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL---- 513
           +       +  L+ + + G  PD      L+  + +     LG++ E VE  N  +    
Sbjct: 328 RIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCK-----LGEVEEAVEILNQMILRDF 382

Query: 514 -------GYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENA 566
                    ++  L +E  +E     EATEL   ++          L D+C   +L++  
Sbjct: 383 SPNTVTYNTLISTLCKENQVE-----EATELARVLTSK------GILPDVCTFNSLIQGL 431

Query: 567 CKLLELGLTLEVYTDIQSR 585
           C      L +E++ +++++
Sbjct: 432 CLTNNHRLAMELFEEMKTK 450


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 163/364 (44%), Gaps = 36/364 (9%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +    K R +DKAE +   M+D+GV PDN T+++LI          +AV   ++M 
Sbjct: 254 YNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMT 313

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR--ARNEKWRI----------------- 268
           S G  PD +T +S++ +  + G ++ A  ++D    + +K  I                 
Sbjct: 314 SQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLV 373

Query: 269 ----------------DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
                           D + F+ LIK Y   G  D    ++ EM+  GV+P+++TY+ ++
Sbjct: 374 DLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVI 433

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
             + R  +       + +M D G++P+ +TY  L++ +           +  +M  KGM+
Sbjct: 434 AALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMR 493

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
             +  +N ++     +G   +A  IF D   S    P+   +++++      GK+  A  
Sbjct: 494 PDIGCFNFIINNLCKLGRVMDAQNIF-DFTISIGLHPNVMVYNTLMDGYCLVGKMENALR 552

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           +F+ M+ AG +PN+ V  +L+  Y K  R D+ +     +   GI P       +L+ + 
Sbjct: 553 VFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLF 612

Query: 493 QTPK 496
           Q  +
Sbjct: 613 QAGR 616



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 163/356 (45%), Gaps = 2/356 (0%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LF+ ML  G+ PD+  F+ LI       + ++A   F  M   G +PD +TYS++I A  
Sbjct: 378 LFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALC 437

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           R G ++ A   +++  ++      + +  LI+ + T G+     ++  +M   G++P++ 
Sbjct: 438 RIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIG 497

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
            +N +++ + +  R    + I+      GL PN   Y +L+  Y      E+ L V+  M
Sbjct: 498 CFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVM 557

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
              G+Q +V +Y TL+     VG  DE   +F ++   +  +P +  ++ ++      G+
Sbjct: 558 VSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREIL-HKGIKPSTTLYNIILHGLFQAGR 616

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
              A+  F+EM E+G   + +  + ++    K   +D+ +     L  + +  D      
Sbjct: 617 TVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNI 676

Query: 487 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 541
           ++  M Q  + EE   L   + +S      V   ++    I+    +EA ++F+S+
Sbjct: 677 MIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSM 732



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 101/442 (22%), Positives = 189/442 (42%), Gaps = 33/442 (7%)

Query: 146 DTAALALTYFTNKLKASKEVIL------YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD 199
           D  ALA+  F    +A    +L      Y + M    +          F  +L  G+  D
Sbjct: 83  DGPALAVALFNRVSRAHGPRVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGID 142

Query: 200 NVTFSTLISCARMNNLPNKAVE-WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
            +  S L+          +A++    RMP  GC PD  +Y  ++ +         A  L 
Sbjct: 143 TIMISNLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELL 202

Query: 259 DRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
                      PN  A++T+I  +   G+ +   +++ EM   G+ P++ TYN +++ + 
Sbjct: 203 RMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALC 262

Query: 317 RAKRPWQVKTIYKEMTDNGLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           +A+   + + I ++M D G+ P NW TY SL+  Y      ++ + V ++M  +G+   V
Sbjct: 263 KARAMDKAEAILRQMVDKGVLPDNW-TYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDV 321

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
              N+L+A     G   +A ++F+ M + +  + D +++  M+   + +G + +   +FN
Sbjct: 322 VTLNSLMASLCKHGKIKDARDVFDSM-AMKGQKTDIFSYKIMLNGYATKGCLVDLTELFN 380

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
            ML  G  P+  +   LI+ Y K    D      N + E G+ PD      ++  + +  
Sbjct: 381 LMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCR-- 438

Query: 496 KEELGKLVECVEKSNSKLGYVV-------KLLLEEQDIEGDFKKEATELFNSISKDVKKA 548
              +GK+ + VEK N  +   V         L++     GD  K    +   ++K ++  
Sbjct: 439 ---IGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRP- 494

Query: 549 YCNCLIDL-CVNLNLLENACKL 569
                 D+ C N  ++ N CKL
Sbjct: 495 ------DIGCFNF-IINNLCKL 509



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 163/352 (46%), Gaps = 16/352 (4%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK--PDNVTFSTLISCARMNNLP 216
           L    +V  Y + +K     R   +A+ L   M + G    P+ V ++T+I         
Sbjct: 173 LGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDV 232

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           NKA + F  M   G  PD  TY+ +++A  +A  ++ A  +  +  ++    D   +++L
Sbjct: 233 NKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSL 292

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           I  Y + G +   + V ++M + G+ P+++T N+L+ ++ +  +    + ++  M   G 
Sbjct: 293 IYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQ 352

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
             +  +Y  +L  Y       D   ++  M   G+     ++N L+   A  G  D A  
Sbjct: 353 KTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATI 412

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ-- 454
           IF +M+  +  +PD  T+S++I      GK+ +A   FN+M++ G  P++     LIQ  
Sbjct: 413 IFNEMR-EQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGF 471

Query: 455 -CYGKAQRTDD-VVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVE 504
             +G   +  D V++ +N+    G+ PD    GC   ++    K  LG++++
Sbjct: 472 CTHGDLLKAKDLVLQMMNK----GMRPD---IGCFNFIINNLCK--LGRVMD 514



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/342 (20%), Positives = 149/342 (43%), Gaps = 45/342 (13%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN-----KAVEW 222
           Y+  ++ F    DL KA+ L   M+++G++PD   F+ +I     NNL        A   
Sbjct: 464 YHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFII-----NNLCKLGRVMDAQNI 518

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F+   S G  P+ + Y++++D Y   G +E A  ++D   +   + +   + TL+  Y  
Sbjct: 519 FDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCK 578

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G  D  L+++ E+   G+KP+   YN +L  + +A R    K  + EMT++G++ +  T
Sbjct: 579 VGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYT 638

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV-------------- 388
           Y+ +L    +    ++ + +++E+    +++ +T  N ++A    +              
Sbjct: 639 YSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQIRRVEEAKDLFASIS 698

Query: 389 ---------------------GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
                                G  +EA ++F  M+++   QP+S   + ++     + ++
Sbjct: 699 RSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSMENAGCEQPNSQLLNHVVRELLEKREI 758

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
             A    +++ E  F  +    T LI  +       + +R L
Sbjct: 759 VRAGTYLSKIDERSFSLDHSTTTLLIDLFSSKGTCREHIRFL 800



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/216 (19%), Positives = 97/216 (44%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
           FT  +     V++YN  M  +     ++ A R+FD M+  G++P+ V + TL++      
Sbjct: 521 FTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVG 580

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
             ++ +  F  +   G  P    Y+ ++    +AG    A   +         +D   +S
Sbjct: 581 RIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYS 640

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            ++         D  + +++E+ A+ VK ++ T N ++  M + +R  + K ++  ++ +
Sbjct: 641 IVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQIRRVEEAKDLFASISRS 700

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           GL P+  TY+ ++    +    E+   ++  M+  G
Sbjct: 701 GLVPSVVTYSIMMTNLIKEGLVEEADDMFSSMENAG 736


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 146/317 (46%), Gaps = 2/317 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++YN  +  + +  D+D+A    + M  RG++P+ + F+++I       + +KA EW ++
Sbjct: 278 VIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKK 337

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P   TY+ +ID YGR       F + +       + +  ++ +LI      G 
Sbjct: 338 MVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGK 397

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 V  +M   GV PN   YN L+D      +  +    + EM+ NG+     TY S
Sbjct: 398 ILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNS 457

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L++   +    ++   ++  +   G    V  YN+L++  ++ G + +  E++E MK   
Sbjct: 458 LIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKL- 516

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +P   TF  +I+ CS  G +   E +FNEML+    P+  V  ++I CY +       
Sbjct: 517 GLKPTINTFHPLISGCSKEG-IKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKA 575

Query: 466 VRALNRLPELGITPDDR 482
                 + ++G+ PD++
Sbjct: 576 FSLQKEMVDMGVRPDNK 592



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 140/278 (50%), Gaps = 6/278 (2%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           C+D  + +AE +  DM+ RGV P+   ++ LI  +       +A+ +F+ M   G     
Sbjct: 393 CKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATI 452

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           +TY+S+I    + G ++ A  ++    +     D   +++LI  Y  AGN   CL +YE 
Sbjct: 453 VTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYET 512

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           MK +G+KP + T++ L+   G +K   ++K T++ EM    LSP+   Y +++  Y    
Sbjct: 513 MKKLGLKPTINTFHPLIS--GCSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETG 570

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
           + +   S+ +EM + G++     YN+L+      G   E  ++ +DMK ++   P++ T+
Sbjct: 571 HVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMK-AKGLIPEADTY 629

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           S +I         + A   + EMLE GF PN+ +   L
Sbjct: 630 SLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNEL 667



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 142/332 (42%), Gaps = 2/332 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++Y   M    K  DL  A  LF+ M  R V P+   ++ LI           A + F  
Sbjct: 67  LVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGE 126

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M      P+ +T++++ID Y +AG V++A GL +R + EK       F++L+     A  
Sbjct: 127 MSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARR 186

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA-KRPWQVKTIYKEMTDNGLSPNWNTYA 344
            +    +  E+K  G  P+  TY+ + D + ++         +Y+E    G+  +  T +
Sbjct: 187 IEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCS 246

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            LL    +    E    V + + E G+     +YNT++     +G  D A    E M+ S
Sbjct: 247 ILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQME-S 305

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              +P+   F+S+I        + +AE    +M+  G  P++     LI  YG+      
Sbjct: 306 RGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSR 365

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
             + L  + E G  P+    G L+N + +  K
Sbjct: 366 CFQILEEMEENGEKPNVISYGSLINCLCKDGK 397



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 151/335 (45%), Gaps = 6/335 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     + K    V +YNV +    K + +  AE+LF +M  R + P+ VTF+TLI 
Sbjct: 85  AMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLID 144

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   + A+   ERM     +P  +T++S++    +A  +E A  + +  +   +  
Sbjct: 145 GYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFV- 203

Query: 269 DPNAFSTLIKLYGTAGNFDG---CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
            P+ F+  I   G   + DG    L++Y E    GVK +  T + LL+ + +  +  + +
Sbjct: 204 -PDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAE 262

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + K + ++GL P    Y +++  Y +    +  +    +M+ +G++ +   +N+++   
Sbjct: 263 EVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKF 322

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            ++   D+A E  + M   +   P   T++ +I         S    +  EM E G +PN
Sbjct: 323 CEMQMIDKAEEWVKKM-VGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPN 381

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +    SLI C  K  +  +    L  +   G+ P+
Sbjct: 382 VISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPN 416



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 128/278 (46%), Gaps = 4/278 (1%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFER 225
           +YN+ +        L +A R FD+M   G+    VT+++LI    +M  L  +A E F  
Sbjct: 419 IYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKL-KEAEEMFFL 477

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           + S G  PD +TY+S+I  Y  AGN +    LY+  +    +   N F  LI      G 
Sbjct: 478 ITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEG- 536

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 ++ EM  + + P+ + YN ++          +  ++ KEM D G+ P+  TY S
Sbjct: 537 IKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNS 596

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  + +     +T  +  +MK KG+      Y+ L+    D+   + A+  + +M  + 
Sbjct: 597 LILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLEN- 655

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
              P+    + + T     G++ EA+++ +EM+  G +
Sbjct: 656 GFLPNVCICNELSTGLRKDGRLQEAQSICSEMIANGMD 693



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 112/253 (44%), Gaps = 3/253 (1%)

Query: 151 ALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL +F   +K      ++ YN  +K   K   L +AE +F  +   G  PD +T+++LIS
Sbjct: 436 ALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLIS 495

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    K +E +E M   G  P   T+  +I    + G +++   L++         
Sbjct: 496 GYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEG-IKLKETLFNEMLQMNLSP 554

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   ++ +I  Y   G+     ++ +EM  +GV+P+  TYN+L+    +  +  + K + 
Sbjct: 555 DRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLV 614

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            +M   GL P  +TY+ L++ +   +        YREM E G   +V + N L       
Sbjct: 615 DDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELSTGLRKD 674

Query: 389 GYTDEAFEIFEDM 401
           G   EA  I  +M
Sbjct: 675 GRLQEAQSICSEM 687



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 1/169 (0%)

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           LL     +K   QV  +Y  M   G  P++     ++ +   ++  ++ L +++EM   G
Sbjct: 2   LLSVCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLG 61

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
            +    +Y   +     +G    A E+FE MK  +   P+ + ++ +I       ++ +A
Sbjct: 62  FRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRK-VVPNVFVYNVLIGGLCKEKRIRDA 120

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           E +F EM      PN     +LI  Y KA   D  +    R+ +  + P
Sbjct: 121 EKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEP 169


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 147/317 (46%), Gaps = 2/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAER-LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           V+ +N  +  F +   L++A   ++D M++ G  PD  TFSTL++      L   A+E  
Sbjct: 346 VVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELV 405

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M + GC P+  TY+ +ID + + G +E A  +      + + ++   ++ LI      
Sbjct: 406 NDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKH 465

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     L+++ EM + G KP++ T+N+L+  + R         +Y++M   G+  N  T+
Sbjct: 466 GKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTF 525

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ A+ R    ++ L +  +M  +G  L    YN L+      G  ++   +FE+M  
Sbjct: 526 NTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEM-I 584

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +   P   T + +I      GKV  A     +M+  GF P++    SLI    K  R  
Sbjct: 585 RKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQ 644

Query: 464 DVVRALNRLPELGITPD 480
           + +    +L   GI PD
Sbjct: 645 EALNLFEKLQAEGIQPD 661



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 136/296 (45%), Gaps = 1/296 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +  F K   L++A  +  +ML +G   + V ++ LIS    +   ++A++ F  M 
Sbjct: 420 YTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMS 479

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S GC PD  T++S+I    R   +E A  LY     E    +   F+TLI  +   G   
Sbjct: 480 SKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQ 539

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L +  +M   G   + ITYN L+  + +     +   +++EM   GL+P+  T   L+
Sbjct: 540 EALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILI 599

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             +  A    + L   R+M  +G    +  YN+L+      G   EA  +FE +++ E  
Sbjct: 600 NGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQA-EGI 658

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           QPDS T++++I      G   +A  +    +E GF PN      L+  +GK   ++
Sbjct: 659 QPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNFGKQSNSE 714



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 163/376 (43%), Gaps = 35/376 (9%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           + + MK      ++D A  L  DM   G  P+++ + TLI      +  ++A++  E M 
Sbjct: 213 FGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMF 272

Query: 228 SFGCDPDALTYSSMIDAYGRAGNV------------------EMAFGLYDRARNEKWRID 269
             GC PD  T++++I  + R   V                  +M +G       +  RID
Sbjct: 273 LMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRID 332

Query: 270 -----------PNA--FSTLIKLYGTAGNF-DGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
                      PN   F+TL+  +   G   +    VY++M   G  P++ T++ L++ +
Sbjct: 333 EAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGL 392

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +         +  +M   G  PN NTY  L+  + +    E+   + REM  KG  L+ 
Sbjct: 393 CKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNT 452

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YN L++     G   EA ++F +M SS+ C+PD +TF+S+I       ++ +A A++ 
Sbjct: 453 VGYNALISALCKHGKIHEALDMFGEM-SSKGCKPDIFTFNSLIFGLCRVDEMEDALALYR 511

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
           +M+  G   N     +LI  + +     + ++ +N +   G   D+     L+  + +T 
Sbjct: 512 DMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTG 571

Query: 496 KEE--LGKLVECVEKS 509
             E  LG   E + K 
Sbjct: 572 AVEKGLGLFEEMIRKG 587



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 134/314 (42%), Gaps = 6/314 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YNV + V         A  +F DML +GV P++ TF  ++    M N  + A      M 
Sbjct: 178 YNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMT 237

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P+++ Y ++IDA  +   V+ A  L +         D N F+T+I  +       
Sbjct: 238 KHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVL 297

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + + M   G  PN +TY  L+  + +  R  + + +  ++      PN   + +L+
Sbjct: 298 EGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVP----GPNVVHFNTLV 353

Query: 348 RAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
             + R  R  E T  VY +M   G    V  ++TL+      G    A E+  DM  ++ 
Sbjct: 354 NGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDM-DAKG 412

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
           C+P+  T++ +I     +G++ EA  +  EML  GF  N     +LI    K  +  + +
Sbjct: 413 CKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEAL 472

Query: 467 RALNRLPELGITPD 480
                +   G  PD
Sbjct: 473 DMFGEMSSKGCKPD 486



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 106/238 (44%), Gaps = 2/238 (0%)

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            Y  +ID  G A   ++   L  + + E      + F  ++K YG AG       +  +M
Sbjct: 106 VYYLLIDKLGAAAGFKVIDRLLLQMKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDM 165

Query: 297 KAI-GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           K +   +P+  +YN +LD +     P     ++ +M   G+SPN  T+  +++A      
Sbjct: 166 KGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNE 225

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            ++   + R+M + G   +  +Y TL+   +     DEA ++ E+M     C PD  TF+
Sbjct: 226 VDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEM-FLMGCPPDVNTFN 284

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           ++I       +V E   + + M+  GF PN      L+    K  R D+    L+++P
Sbjct: 285 TVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVP 342



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 90/200 (45%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +N  +  F +  ++ +A +L +DML RG   D +T++ LI          K +  FE 
Sbjct: 523 VTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEE 582

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P  +T + +I+ +  AG V  A        +  +  D   +++LI      G 
Sbjct: 583 MIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGR 642

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               LN++E+++A G++P+ ITYN L+  + R         +     +NG  PN  T+  
Sbjct: 643 IQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNI 702

Query: 346 LLRAYGRARYGEDTLSVYRE 365
           L+  +G+    E     Y +
Sbjct: 703 LVYNFGKQSNSEGQTITYAQ 722



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 59/124 (47%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I  N+ +  F     +  A     DM+ RG  PD VT+++LI+         +A+  FE
Sbjct: 592 IITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFE 651

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           ++ + G  PD++TY+++I    R G  + A  L  R     +  +   ++ L+  +G   
Sbjct: 652 KLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNFGKQS 711

Query: 285 NFDG 288
           N +G
Sbjct: 712 NSEG 715



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 2/175 (1%)

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
            Y  L+D +G A     +  +  +M + G+    + +  +++ YGRA        +  +M
Sbjct: 106 VYYLLIDKLGAAAGFKVIDRLLLQMKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDM 165

Query: 367 KE-KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           K     + S   YN +L +         A  +F DM  S+   P+ +TF  ++       
Sbjct: 166 KGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYDM-LSKGVSPNDYTFGLVMKALCMVN 224

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +V  A  +  +M + G  PN  +  +LI    K  R D+ ++ L  +  +G  PD
Sbjct: 225 EVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPD 279



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 74/171 (43%), Gaps = 1/171 (0%)

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G   +++ Y  L+   G A   +    +  +MKE+G+    +L+  ++      G   +A
Sbjct: 99  GYCHSFSVYYLLIDKLGAAAGFKVIDRLLLQMKEEGIVFRESLFILIMKYYGRAGLPGQA 158

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
             +  DMK    C+P   +++ ++ +       S A  +F +ML  G  PN +    +++
Sbjct: 159 TRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMK 218

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 504
                   D+    L  + + G  P+      L++ +++  + +E  KL+E
Sbjct: 219 ALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLE 269


>gi|298706415|emb|CBJ29411.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 416

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 155/343 (45%), Gaps = 8/343 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDML-DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           Y++ +    K     +A  L  +M  D  +K D V +S  I+         +AV     M
Sbjct: 13  YSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGGRWQEAVAILSDM 72

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
           P+ G  P+ ++ ++ I A+G AG  + A  +           D  +++T I   G AG  
Sbjct: 73  PNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAISYNTAISALGVAGQS 132

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-PW-QVKTIYKEMTDNGLSPNWNTYA 344
           +    +  EM  +G++P ++TYN+ +  + R     W Q   + K M+  G++P+  TY 
Sbjct: 133 EQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMSLAGVTPDSITYN 192

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL+ A G+    +  LSV + MK++G+   +  Y+  ++ C + G  + +  +  + KS 
Sbjct: 193 SLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWEYSVGLLAEAKSL 252

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               PD   +++ +T C+   +  +A  +  EML AG  P+    TSLI   G   +   
Sbjct: 253 -GITPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPDAAAFTSLIAALGHDGQWTQ 311

Query: 465 VVRALNRLPELGITPDDRFCGCLL----NVMTQTPKEELGKLV 503
            V  L  +P++G   +      L+    N      +EE G L+
Sbjct: 312 AVEILESMPKMGAPRNAMVYNALITSWANAEVAKGEEEGGALL 354



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 146/334 (43%), Gaps = 24/334 (7%)

Query: 133 QDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDML 192
           Q+ +++L  M   D   L             +V+ Y+  +          +A  +  DM 
Sbjct: 27  QEALVLLREMEEDDEIKL-------------DVVAYSAAITACANGGRWQEAVAILSDMP 73

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           + GV+P+ ++ +  I           A+     M   G  PDA++Y++ I A G AG  E
Sbjct: 74  NVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAISYNTAISALGVAGQSE 133

Query: 253 MAFGLYDRARNEKWRIDP------NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
            A  L   +   +  I+P      +A + + +  G  G +   + + + M   GV P+ I
Sbjct: 134 QAQELM--SEMSRLGIEPTVVTYNSAIAAIAR--GGGGQWRQAVALVKHMSLAGVTPDSI 189

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TYN+L+   G+  +  Q  ++ K M   GLS +   Y++ + A G A   E ++ +  E 
Sbjct: 190 TYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWEYSVGLLAEA 249

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           K  G+   +  Y   +  CAD    D+A  + ++M S+   +PD+  F+S+I      G+
Sbjct: 250 KSLGITPDLVAYTAAVTACADANQRDKATFLLKEMLSA-GIRPDAAAFTSLIAALGHDGQ 308

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
            ++A  +   M + G   N  V  +LI  +  A+
Sbjct: 309 WTQAVEILESMPKMGAPRNAMVYNALITSWANAE 342



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 121/258 (46%), Gaps = 4/258 (1%)

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY-DRARNEKWRIDPNAFSTLIKLYGTAG 284
           MP  G  P   +YS  + A  + G  + A  L  +   +++ ++D  A+S  I      G
Sbjct: 1   MPGLGIRPSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGG 60

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            +   + +  +M  +GV+PN+I+ N  +   G A +     +I + M+  GLSP+  +Y 
Sbjct: 61  RWQEAVAILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAISYN 120

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD--EAFEIFEDMK 402
           + + A G A   E    +  EM   G++ +V  YN+ +A  A  G     +A  + + M 
Sbjct: 121 TAISALGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHM- 179

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           S     PDS T++S+I  C   G+  +A ++   M + G   ++   ++ I   G+A + 
Sbjct: 180 SLAGVTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQW 239

Query: 463 DDVVRALNRLPELGITPD 480
           +  V  L     LGITPD
Sbjct: 240 EYSVGLLAEAKSLGITPD 257



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 121/295 (41%), Gaps = 8/295 (2%)

Query: 191 MLDRGVKPDNVTFST-LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
           M   G++P   ++S  L +CA+        V   E         D + YS+ I A    G
Sbjct: 1   MPGLGIRPSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGG 60

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
             + A  +     N   R  PN  S    IK +G AG +   L++   M   G+ P+ I+
Sbjct: 61  RWQEAVAILSDMPNVGVR--PNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAIS 118

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE--DTLSVYRE 365
           YN  +  +G A +  Q + +  EM+  G+ P   TY S + A  R   G+    +++ + 
Sbjct: 119 YNTAISALGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKH 178

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M   G+      YN+L+  C   G   +A  + + MK  +    D   +S+ I+ C   G
Sbjct: 179 MSLAGVTPDSITYNSLIVACGKGGQWKQALSVLKGMKK-QGLSCDIIGYSAAISACGEAG 237

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +   +  +  E    G  P+L   T+ +     A + D     L  +   GI PD
Sbjct: 238 QWEYSVGLLAEAKSLGITPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPD 292


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 159/357 (44%), Gaps = 43/357 (12%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A  +VI YNV +  + K  ++D A ++ D M    V PD VT++T++     +    +A+
Sbjct: 123 AVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAM 179

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E  +R     C PD +TY+ +I+A  +   V  A  L D  RN+  + D   ++ LI   
Sbjct: 180 EVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGI 239

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW------------------ 322
              G  D  +     M + G +PN+IT+N +L +M    R W                  
Sbjct: 240 CKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR-WMDAEKLLSDMLRKGCSPS 298

Query: 323 ------------------QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
                             +   I ++M  +G +PN  +Y  LL  + + +  +  +    
Sbjct: 299 VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLD 358

Query: 365 EMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
            M  +G    +  YNTLL A+C D G  D A EI   + SS+ C P   T++++I   S 
Sbjct: 359 IMVSRGCYPDIVTYNTLLTALCKD-GKVDVAVEILNQL-SSKGCSPVLITYNTVIDGLSK 416

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            GK   A  + +EM   G +P++   +SL+    +  + D+ ++  + L  LGI P+
Sbjct: 417 VGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPN 473



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 132/278 (47%), Gaps = 1/278 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI +N+ ++          AE+L  DML +G  P  VTF+ LI+      L  +A++  E
Sbjct: 264 VITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILE 323

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +MP  GC P++L+Y+ ++  + +   ++ A    D   +     D   ++TL+      G
Sbjct: 324 KMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDG 383

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  + +  ++ + G  P +ITYN ++D + +  +  +   +  EM   GL P+  TY+
Sbjct: 384 KVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYS 443

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL+    R    ++ +  + +++  G++ +   YN+++        TD A +    M  S
Sbjct: 444 SLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYM-IS 502

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
           + C+P   T++ +I   +  G   EA  + NE+   G 
Sbjct: 503 KRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 540



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 139/333 (41%), Gaps = 6/333 (1%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           +L+   +  + M+ RG  PD +  ++LI          KA    E +   G  PD +TY+
Sbjct: 72  ELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYN 131

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +I  Y ++G ++ A  + DR        D   ++T+++    +G     + V +     
Sbjct: 132 VLISGYCKSGEIDNALQVLDRMNVAP---DVVTYNTILRTLCDSGKLKQAMEVLDRQLQK 188

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
              P++ITY  L++   +     Q   +  EM + G  P+  TY  L+    +    ++ 
Sbjct: 189 ECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEA 248

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           +     M   G Q +V  +N +L      G   +A ++  DM   + C P   TF+ +I 
Sbjct: 249 IKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDM-LRKGCSPSVVTFNILIN 307

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
               +G +  A  +  +M   G  PN      L+  + K ++ D  +  L+ +   G  P
Sbjct: 308 FLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYP 367

Query: 480 DDRFCGCLLNVMTQTPKEELGKLVECVEKSNSK 512
           D      LL  + +  K ++   VE + + +SK
Sbjct: 368 DIVTYNTLLTALCKDGKVDVA--VEILNQLSSK 398



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 76/156 (48%), Gaps = 1/156 (0%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A   L   ++K   S  +I YN  +    K    ++A +L D+M  +G+KPD +T+S+
Sbjct: 386 DVAVEILNQLSSK-GCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSS 444

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           L+S        ++A+++F  +   G  P+A+TY+S++    ++   + A        +++
Sbjct: 445 LVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKR 504

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
            +     ++ LI+     G     L++  E+ + G+
Sbjct: 505 CKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 540


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 149/312 (47%), Gaps = 8/312 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I YN+ +  F      D   +L  DM+ R + P+ VTFS LI          +A E  +
Sbjct: 396 IITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHK 455

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGT 282
            M   G  PD +TY+S+ID + +  +++ A  + D   ++    DPN   F+ LI  Y  
Sbjct: 456 EMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG--CDPNIRTFNILINGYCK 513

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           A   D  L ++ +M   GV  + +TYN L+       +    K +++EM    + PN  T
Sbjct: 514 ANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVT 573

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y  LL         E  L ++ ++++  M+L + +YN ++    +    D+A+++F  + 
Sbjct: 574 YKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL- 632

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKA 459
             +  +P   T++ MI     +G +SEAE +F +M E G  P+ +    LI+ +   G A
Sbjct: 633 PLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDA 692

Query: 460 QRTDDVVRALNR 471
            ++  ++  L R
Sbjct: 693 TKSVKLIEELKR 704



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 161/368 (43%), Gaps = 45/368 (12%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           + +A  L D M++ G KPD +T +TL++   ++    +A+   ++M  +GC P+A+TY  
Sbjct: 272 VSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGP 331

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +++   ++G   +A  L  +      ++D   +S +I      G+ D   N++ EM+  G
Sbjct: 332 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 391

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGE 357
           +  N+ITYN L+     A R      + ++M    ++PN  T++ L+ ++   G+ R  E
Sbjct: 392 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 451

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           +   +++EM  +G+                                     PD+ T++S+
Sbjct: 452 E---LHKEMIHRGI------------------------------------APDTITYTSL 472

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I        + +A  M + M+  G +PN+     LI  Y KA R DD +    ++   G+
Sbjct: 473 IDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGV 532

Query: 478 TPDDRFCGCLLNVMTQTPKEELGK--LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT 535
             D      L+    +  K  + K    E V +         K+LL+     G+ +K A 
Sbjct: 533 VADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEK-AL 591

Query: 536 ELFNSISK 543
           E+F  I K
Sbjct: 592 EIFEKIEK 599



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 138/343 (40%), Gaps = 36/343 (10%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D A  LF DM+     P  + FS L S        +  +   ++M   G   +  T S M
Sbjct: 168 DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIM 227

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I+ + R   + +AF    +     +  +   FSTLI      G     L + + M  +G 
Sbjct: 228 INCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH 287

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY----------- 350
           KP++IT N L++ +  + +  +   +  +M + G  PN  TY  +L              
Sbjct: 288 KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAME 347

Query: 351 ----------------------GRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
                                 G  ++G  ++  +++ EM+ KG+  ++  YN L+    
Sbjct: 348 LLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFC 407

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           + G  D+  ++  DM       P+  TFS +I      GK+ EAE +  EM+  G  P+ 
Sbjct: 408 NAGRWDDGAKLLRDM-IKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDT 466

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
              TSLI  + K    D   + ++ +   G  P+ R    L+N
Sbjct: 467 ITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILIN 509



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 2/145 (1%)

Query: 137 IILNNMTNPDTAALALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+L+ + +   +  AL  F    K K   ++ +YN+ +        +D A  LF  +  +
Sbjct: 576 ILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK 635

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           GVKP   T++ +I         ++A   F +M   G  PD  TY+ +I A+   G+   +
Sbjct: 636 GVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKS 695

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKL 279
             L +  +   + +D +    +I +
Sbjct: 696 VKLIEELKRCGFSVDASTIKMVIDM 720


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 173/381 (45%), Gaps = 15/381 (3%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D+++A  LF++   + +KPD V +++L+       L   A++    M   GC PD  TY+
Sbjct: 365 DIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYN 424

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +I+   + GN+  A  + + A  + +  D   F+TLI  Y      D  L + E M   
Sbjct: 425 IIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTY 484

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G+ P++ITYN++L+ + +A +  +V   ++EM   G  PN  TY  L+  + +    E+ 
Sbjct: 485 GIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEA 544

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
             V   M + G+      +NTL+      G  D A+ +F+ +   +     + TF+ +I 
Sbjct: 545 SGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKL-DEKGYSATADTFNILIG 603

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             S +  +  AE +F EM+  G++P+L+    L+    KA   D     L  +   G  P
Sbjct: 604 AYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVP 663

Query: 480 DDRFCGCLLNVMTQTPKEE--------------LGKLVECVEKSNSKLGYVVKLLLEEQD 525
                G +LN++    +                + ++V+ +  ++ K     K+L+EE  
Sbjct: 664 SMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVPEVVDTILSTDKKEIAAPKILVEELM 723

Query: 526 IEGDFKKEATELFNSISKDVK 546
            +G     A E+ +   +D K
Sbjct: 724 KKGHISYRAYEVLHEGVRDNK 744



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 132/285 (46%), Gaps = 1/285 (0%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V PD VT++TL+     ++   +A ++  RM + GC PD  TY+++ID Y ++G ++ A 
Sbjct: 276 VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEAT 335

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L   A  + +  D   + +LI      G+ +  L ++ E +A  +KP+++ YN+L+  +
Sbjct: 336 ELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGL 395

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            R         +  EM + G  P+  TY  ++    +     D   V  +   KG    V
Sbjct: 396 CRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDV 455

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             +NTL+         D A ++ E M +     PD  T++S++      GK  E    F 
Sbjct: 456 FTFNTLIDGYCKRLKLDSALQLVERMWTY-GIAPDVITYNSVLNGLCKAGKAKEVNETFE 514

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           EM+  G  PN      LI+ + K  + ++    + R+ + G+ PD
Sbjct: 515 EMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPD 559



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 141/315 (44%), Gaps = 1/315 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           + +V+ YN  M+   K   + +A +    M+++G  PD+ T++T+I     + +  +A E
Sbjct: 277 APDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATE 336

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             +     G  PD +TY S+I+     G++E A  L++ A+ +  + D   +++L+K   
Sbjct: 337 LLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLC 396

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G     L V  EM   G  P++ TYN +++ + +         +  +    G  P+  
Sbjct: 397 RQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVF 456

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+ +L+  Y +    +  L +   M   G+   V  YN++L      G   E  E FE+M
Sbjct: 457 TFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEM 516

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
              + C+P++ T++ +I       ++ EA  +   M + G  P+     +LI  + +   
Sbjct: 517 -ILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGD 575

Query: 462 TDDVVRALNRLPELG 476
            D       +L E G
Sbjct: 576 LDGAYLLFQKLDEKG 590



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 106/238 (44%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  +N  +  + K   LD A +L + M   G+ PD +T++++++         +  E F
Sbjct: 454 DVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETF 513

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   GC P+A+TY+ +I+ + +   +E A G+  R   +    D  +F+TLI  +   
Sbjct: 514 EEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRN 573

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+ DG   +++++   G      T+N L+            + I+ EM   G  P+  TY
Sbjct: 574 GDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTY 633

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
             L+    +A   +   +   EM  KG   S+  +  +L + A      EA  I   M
Sbjct: 634 RILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIM 691



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 101/211 (47%), Gaps = 2/211 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAV 220
           + +VI YN  +    K     +    F++M+ +G +P+ +T++ LI +  ++N L  +A 
Sbjct: 487 APDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQL-EEAS 545

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
               RM   G  PDA++++++I  + R G+++ A+ L+ +   + +    + F+ LI  Y
Sbjct: 546 GVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAY 605

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
            +  N      ++ EM + G KP++ TY  L+D + +A    +      EM   G  P+ 
Sbjct: 606 SSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSM 665

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
            T+  +L          + +++   M   G+
Sbjct: 666 ATFGRMLNLLAMNHRVSEAVAIIHIMVRMGV 696



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/348 (19%), Positives = 133/348 (38%), Gaps = 35/348 (10%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           LY  +++ + +   L  A   F+ M      P    ++ ++         ++A + + RM
Sbjct: 73  LYVASIQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRM 132

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            + G  PDA T++  + ++   G   +A  L            P A+ T+++     G+ 
Sbjct: 133 LAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHG 192

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS--------- 337
               ++++EM    V P++ T+NN+L  + +     +   +  ++   G+S         
Sbjct: 193 YNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIW 252

Query: 338 -------------------------PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                                    P+  TY +L+R   +    ++       M  +G  
Sbjct: 253 IRGLCEDGRLEEAVALVERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCI 312

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
                YNT++      G   EA E+ +D    +   PD  T+ S+I      G +  A  
Sbjct: 313 PDDFTYNTIIDGYCKSGMLQEATELLKD-AVFKGFVPDRVTYCSLINGLCAEGDIERALE 371

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +FNE      +P+L V  SL++   +       ++ +N + E G  PD
Sbjct: 372 LFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPD 419



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 79/173 (45%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I YN+ ++ F K   L++A  +   M   G+ PD V+F+TLI     N   + A   F++
Sbjct: 526 ITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQK 585

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +   G    A T++ +I AY    N++MA  ++    ++ ++ D   +  L+     A N
Sbjct: 586 LDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAAN 645

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            D       EM + G  P+M T+  +L+ +    R  +   I   M   G+ P
Sbjct: 646 VDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVP 698


>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Brachypodium distachyon]
          Length = 556

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 167/358 (46%), Gaps = 5/358 (1%)

Query: 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF 203
           N D  A  L    N+      V  Y + +    +  D+ K E ++D+M  + V  D   +
Sbjct: 198 NDDAVAGLLKEMENR-GVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFY 256

Query: 204 STLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           S +I+   R  N+  +A E F+     G +P+  TY ++I+ + + G +E A  L    +
Sbjct: 257 SAVINAYCRGGNV-RRASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQ 315

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
                 +   F+T+I  Y   G  +  L +   M+ +G++ ++ TYN L   + R  R  
Sbjct: 316 LRGVGHNQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRME 375

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
             K +   M + G++PN+ +Y +L+  + +     +   ++R+M+ KG + SV  YN ++
Sbjct: 376 DAKKLLHIMAEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMI 435

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
                 G   EA E F+     +   PD +T++ ++      GKV  A  +F EM   G 
Sbjct: 436 DGYIKNGSIREA-ERFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGT 494

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM-TQTPKEEL 499
           +PN+   T+L+    K  R+++  +  + +   G+TPDD     L+  + T + K+ L
Sbjct: 495 KPNVVAYTALVSGLAKEGRSEEAFQLYDDMLAAGLTPDDTLYSVLVGSLHTDSRKDPL 552



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 139/312 (44%), Gaps = 1/312 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           +V +  F K   +D A  L D++   GV  +   +++L+         +      + M +
Sbjct: 152 SVVVDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTRQRNDDAVAGLLKEMEN 211

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G +P   TY+ ++D   RAG++     +YD  + +    D   +S +I  Y   GN   
Sbjct: 212 RGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGGNVRR 271

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
              V++E    GV+PN  TY  L++   +  +    + +  +M   G+  N   + +++ 
Sbjct: 272 ASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMID 331

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            Y R    E  L +   M++ G++L +  YNTL      V   ++A ++   M + +   
Sbjct: 332 GYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIM-AEKGVA 390

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           P+  +++++I+I +  G + EA  +F +M   G  P++     +I  Y K     +  R 
Sbjct: 391 PNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERF 450

Query: 469 LNRLPELGITPD 480
              + + G+ PD
Sbjct: 451 KKEMEKKGLVPD 462



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 114/245 (46%), Gaps = 1/245 (0%)

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           L+ S ++D + ++G+V+ A GL D        ++   +++L+  Y    N D    + +E
Sbjct: 149 LSASVVVDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTRQRNDDAVAGLLKE 208

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M+  GV+P + TY  L+D + RA    +V+ +Y EM    ++ +   Y++++ AY R   
Sbjct: 209 MENRGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGGN 268

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
                 V+ E    G++ +   Y  L+     +G  + A  +  DM+       +   F+
Sbjct: 269 VRRASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQ-LRGVGHNQIVFN 327

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           +MI      G V +A  +   M + G E +++   +L     +  R +D  + L+ + E 
Sbjct: 328 TMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMAEK 387

Query: 476 GITPD 480
           G+ P+
Sbjct: 388 GVAPN 392


>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
          Length = 861

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 144/290 (49%), Gaps = 13/290 (4%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC---ARMNNLP---- 216
           +V+ Y   +  F K  D DKA   + +MLDRG+ PD VT+S++I+     +  + P    
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHC 254

Query: 217 --NKAVE---WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
              + +E    F+ M   G  PD +TYS++ID Y  AG ++ A  L     +   + +  
Sbjct: 255 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTV 314

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
            +STLI  Y      +  L +++EM++ GV P++ITYN +L  + + +R    K +Y  +
Sbjct: 315 TYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI 374

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
           T++G     +TY  +L    + +  +D L +++ +    ++L    +N ++     VG  
Sbjct: 375 TESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRN 434

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           DEA ++F    SS    P+ WT+  M      +G + E + +F  M + G
Sbjct: 435 DEAKDLFVAF-SSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 483



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 150/340 (44%), Gaps = 23/340 (6%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFS-TLISCARMNNLPNKAVEWFERMPSFGCD---PDALT 237
           + A  +FD++L RG        +  L   AR +  P  AV  + RM   G D   PD  T
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARHS--PAAAVSRYNRMARAGADEVTPDLCT 89

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEM 296
           Y  +I    RAG +++ F        + +R++   F+ L+K L       D    V   M
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN---GLSPNWNTYASLLRAYGRA 353
             +G  PN+ +YNNLL+ +    R  +   +   M D+   G  P+  +Y +++  + + 
Sbjct: 150 TELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKE 209

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLA-MCADV-----------GYTDEAFEIFEDM 401
              +   S Y EM ++G+   V  Y++++A +C              G   E+ ++F D+
Sbjct: 210 GDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLF-DL 268

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
                 +PD  T+S++I      GK+ EA  + + M+  G +PN    ++LI  Y K  R
Sbjct: 269 MVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISR 328

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
            +D +     +   G++PD      +L  + QT +    K
Sbjct: 329 MEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 368



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/391 (18%), Positives = 176/391 (45%), Gaps = 18/391 (4%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW-FERM 226
           Y + +    +   LD       +++ +G + + +TF+ L+     +   + A++    RM
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN---AFSTLIKLYGTA 283
              GC P+  +Y+++++        + A  L     +++    P    +++T+I  +   
Sbjct: 150 TELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKE 209

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK---RPW---------QVKTIYKEM 331
           G+ D   + Y EM   G+ P+++TY++++  + + +   +PW         + + ++  M
Sbjct: 210 GDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLM 269

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G+ P+  TY++L+  Y  A   ++ + +   M   G++ +   Y+TL+     +   
Sbjct: 270 VRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRM 329

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           ++A  +F++M+SS    PD  T++ ++       + + A+ ++  + E+G +  L     
Sbjct: 330 EDALVLFKEMESS-GVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNI 388

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 511
           ++    K + TDD ++    L  + +  + R    +++ + +  + +  K +     SN 
Sbjct: 389 ILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNG 448

Query: 512 KL-GYVVKLLLEEQDIEGDFKKEATELFNSI 541
            +  Y    L+ E  I     +E  +LF S+
Sbjct: 449 LVPNYWTYRLMAENIIGQGLLEELDQLFLSM 479



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 96/192 (50%), Gaps = 12/192 (6%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS----CARMN 213
           ++    ++I Y+  +  +     +D+A +L   M+  G+KP+ VT+STLI+     +RM 
Sbjct: 271 RIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRME 330

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           +    A+  F+ M S G  PD +TY+ ++    +      A  LY R      +I+ + +
Sbjct: 331 D----ALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTY 386

Query: 274 STLIKLYGTAGN--FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           +  I L+G   N   D  L +++ +  + +K    T+N ++D + +  R  + K ++   
Sbjct: 387 N--IILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 444

Query: 332 TDNGLSPNWNTY 343
           + NGL PN+ TY
Sbjct: 445 SSNGLVPNYWTY 456


>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
          Length = 552

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 173/384 (45%), Gaps = 10/384 (2%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D  AL      + + A++    +N  ++   +  D+  A +LF+ M  +G  P   T++ 
Sbjct: 137 DAVALVHEMVADGVVAAEA---FNPVLRAMLRAGDVKGAAKLFEFMQLKGCVPTAATYNV 193

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           L+    +      A+    RM   G  P  +TY +++D   R G V+ A+ + +      
Sbjct: 194 LVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNG 253

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
              +   +ST+I  +  +G  D  L V+E M A  V+PN++ Y+ ++  +    +  + +
Sbjct: 254 LARNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAE 313

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            +++EM D+  +PN  TY S+++ Y +       LSV+ EM   G   +   Y+ L+   
Sbjct: 314 LLFREMIDSKCAPNIITYGSMIQGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGL 373

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EP 444
            +VG   +A  +++ M     C PD+  ++SMI      G V     +F +ML +G  +P
Sbjct: 374 CNVGRLKDAMMVWKHML-DRGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADP 432

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL---NVMTQTPKEELGK 501
           ++     L+     A+     +  LNR+ + G  PD   C   L       +  +E L  
Sbjct: 433 DVISYNVLLDGLLLAKDLPRAMDLLNRMLDQGCDPDTVTCNIFLREFGAGERKGREFLEG 492

Query: 502 LVE--CVEKSNSKLGYVVKLLLEE 523
           LV   C  + N   G V+ ++L +
Sbjct: 493 LVVRLCDRRRNMAAGEVLMVMLAK 516



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 133/293 (45%), Gaps = 10/293 (3%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWF--------ERMPSFGCDPDALTYSSMIDAYGR 247
           + P  ++F+ L+ C   + +P     +         E +P +   PD  TYS+++ A   
Sbjct: 72  LAPTLLSFNLLLKCVCSSLVPRDPRRYLDVALRILHEIIPGWDLAPDKFTYSTVVSALAD 131

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
           AG V+ A  L      +   +   AF+ +++    AG+  G   ++E M+  G  P   T
Sbjct: 132 AGRVDDAVALVHEMVADG-VVAAEAFNPVLRAMLRAGDVKGAAKLFEFMQLKGCVPTAAT 190

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           YN L+  +    R      + + M   G+ P   TY +++    R    +D   V  EM+
Sbjct: 191 YNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEME 250

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
             G+  +  +Y+T++      G  D A +++E M +S   +P+   +S+MI   +  GK+
Sbjct: 251 RNGLARNEFVYSTVITGFCKSGEIDCALKVWEAMVASP-VRPNVVLYSAMIGGLANFGKM 309

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +EAE +F EM+++   PN+    S+IQ Y K   T   +     +   G  P+
Sbjct: 310 TEAELLFREMIDSKCAPNIITYGSMIQGYFKIGDTSRALSVWEEMIGAGCMPN 362


>gi|414591629|tpg|DAA42200.1| TPA: hypothetical protein ZEAMMB73_531547 [Zea mays]
          Length = 462

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 163/353 (46%), Gaps = 52/353 (14%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++  +NV +K +  C  LDKA  +F++M D GVKP  VT+ T+I+        + A+E F
Sbjct: 63  DIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKF 122

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI----KL 279
            +M   G  PD   Y  +I  +   G++  A  L     N   R+D   F ++I    KL
Sbjct: 123 NQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKL 182

Query: 280 -------------------------------YGTAGNFDGCLNVYEEMKAIGVKPNM--- 305
                                          Y   G  +  L V++ M + G++PN+   
Sbjct: 183 GRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGE 242

Query: 306 ----------ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
                     I YN ++D +  A R    K  + EMT++G++ N  TY+ +LR   + R 
Sbjct: 243 MLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRC 302

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            ++ + +++E++   +++ +   NT++A        +EA ++F  + S     P + T+S
Sbjct: 303 FDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASI-SRSGLVPCAVTYS 361

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
            MIT     G V EAE MF+ M  AG EP+  +L  +++   +  + +++VRA
Sbjct: 362 IMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVR---ELLKKNEIVRA 411



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           + F+ M   G +PD  +Y+ M++ Y   G +     L+D    +    D   F+ LIK Y
Sbjct: 15  DVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAY 74

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G  D  + ++ EM+  GVKP+++TY  ++  + R  +       + +M D G+ P+ 
Sbjct: 75  ANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDK 134

Query: 341 NTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
             Y  L++ +   G     ++ +S   E+   GM+L +  + +++     +G   +A  I
Sbjct: 135 YAYHCLIQGFCTHGSLLKAKELIS---EIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNI 191

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           F D+  +    PD+  ++ ++      GK+ +A  +F+ M+ AG EPN+
Sbjct: 192 F-DLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNV 239



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 156/363 (42%), Gaps = 28/363 (7%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LFD ML  G+ PD  TF+ LI       + +KA+  F  M   G  P  +TY ++I A  
Sbjct: 51  LFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALC 110

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           R G ++ A   +++  ++    D  A+  LI+ + T G+      +  E+   G++ +++
Sbjct: 111 RIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIV 170

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR-- 364
            + ++++ + +  R    + I+    + GL P+   Y  L+  Y      E  L V+   
Sbjct: 171 FFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAM 230

Query: 365 -----------EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
                      EM +KG++ S  LYN ++    + G T  A   F +M  S     +  T
Sbjct: 231 VSAGIEPNVVGEMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTES-GIAMNKCT 289

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           +S ++          EA  +F E+     + ++  L ++I    + +R ++       + 
Sbjct: 290 YSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASIS 349

Query: 474 ELGITPDDRFCGCLLNVM-TQTPKEELGKLVECV---------EKSNSKLGYVVKLLLEE 523
             G+ P    C    ++M T   KE L +  E +         E  +  L +VV+ LL++
Sbjct: 350 RSGLVP----CAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKK 405

Query: 524 QDI 526
            +I
Sbjct: 406 NEI 408



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 101/216 (46%), Gaps = 7/216 (3%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCL----NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
           +P+ FS  I L G A    GCL    ++++ M   G+ P++ T+N L+          + 
Sbjct: 26  NPDVFSYTIMLNGYATK--GCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKA 83

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
             I+ EM D+G+ P+  TY +++ A  R    +D +  + +M ++G+      Y+ L+  
Sbjct: 84  MIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQG 143

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
               G   +A E+  ++ ++   + D   F S+I      G+V +A+ +F+  +  G  P
Sbjct: 144 FCTHGSLLKAKELISEIMNN-GMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHP 202

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  V   L+  Y    + +  +R  + +   GI P+
Sbjct: 203 DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 238


>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
           [Vitis vinifera]
 gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 160/348 (45%), Gaps = 11/348 (3%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
           IL     P  A L     T +      +I Y   +    + +       L   +   G+K
Sbjct: 80  ILIEKGKPQEAQLIFNSLTEE-GHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLK 138

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           PD+V F+ +I+    +    +A++ F +M   GC P   T++++I  YG AG  E    L
Sbjct: 139 PDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKL 198

Query: 258 YDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            D    E+  + PN   F++LI+ +          NV  +M A G++P+++TYN L    
Sbjct: 199 LDLMSQEE-NVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARAY 257

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +     + + +  EM +N + PN  T   ++  Y +    +D L     M+  G+  ++
Sbjct: 258 AQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNL 317

Query: 376 TLYNTLLAMCADVGYT---DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            ++N+L+    D+  T   DEA  + E+       +PD  TFS+++   S  G + + + 
Sbjct: 318 VIFNSLIKGFLDITDTDGVDEALTLMEEF----GVKPDVVTFSTIMNAWSSVGLMDKCQE 373

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +F++M++AG EP++   + L + Y +A   +     L  + + G+ P+
Sbjct: 374 IFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPN 421



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 105/198 (53%)

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           ++  +   G +P +ITY  LL  + R KR   + ++  ++  NGL P+   + +++ A+ 
Sbjct: 93  IFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFS 152

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
            +   ++ + ++R+MK++G + + + +NTL+    + G  +E  ++ + M   EN +P+ 
Sbjct: 153 ESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPND 212

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            TF+S+I     + +++EA  +  +M  +G +P++    +L + Y +   T      +  
Sbjct: 213 RTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILE 272

Query: 472 LPELGITPDDRFCGCLLN 489
           +    + P++R CG ++N
Sbjct: 273 MQNNRVMPNERTCGIIIN 290



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 11/246 (4%)

Query: 99  YNSLVKLAADLDSCSATEDDVFSVL--RCLGDDFLEQDCVIILNNMTNPDTA--ALALTY 154
           YN+L +  A     S  E  +  +   R + +   E+ C II+N          AL   Y
Sbjct: 250 YNTLARAYAQNGETSRAEGMILEMQNNRVMPN---ERTCGIIINGYCKEGKMKDALRFLY 306

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
                     ++++N  +K F    D D  +     M + GVKPD VTFST+++      
Sbjct: 307 RMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVG 366

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA-- 272
           L +K  E F+ M   G +PD   +S +   Y RAG  E A  L       K  + PN   
Sbjct: 367 LMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAM--GKSGVQPNVVI 424

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           F+T+I  + +AG  +    VYE+M  +G+ PN+ T+  L+   G AK P + + + + M 
Sbjct: 425 FTTIISGWCSAGKMEYASRVYEKMCEMGICPNLKTFETLIWGYGEAKEPQKAEELLQIME 484

Query: 333 DNGLSP 338
             G++P
Sbjct: 485 QKGVAP 490



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 107/228 (46%), Gaps = 8/228 (3%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +  A R    M + GV P+ V F++LI         +   E    M  FG  PD +T+S+
Sbjct: 298 MKDALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFST 357

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +++A+   G ++    ++D         D +AFS L K Y  AG  +   ++   M   G
Sbjct: 358 IMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSG 417

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           V+PN++ +  ++     A +      +Y++M + G+ PN  T+ +L+  YG A+  +   
Sbjct: 418 VQPNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGICPNLKTFETLIWGYGEAKEPQKAE 477

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAFEIFEDMKSS 404
            + + M++KG    V    + + + AD    +G  +EA  I  D++ +
Sbjct: 478 ELLQIMEQKG----VAPVKSTIQLVADAWHALGLANEAKRIKNDVEEA 521



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 42/80 (52%)

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + ++ I   +GK  EA+ +FN + E G  P L   T+L+    + +R   +   +++L +
Sbjct: 75  TKLMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEK 134

Query: 475 LGITPDDRFCGCLLNVMTQT 494
            G+ PD  F   ++N  +++
Sbjct: 135 NGLKPDSVFFNAMINAFSES 154


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 160/333 (48%), Gaps = 3/333 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERM 226
           Y + +      RD+ K E +F++M  + +  D   +S++I+   R  N+  +A E F+  
Sbjct: 216 YTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNV-RRASEVFDEC 274

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G +P+  TY ++I+ + + G +E A  L    +     I+   F+T+I  Y      
Sbjct: 275 VGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMV 334

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  L +   M+ +G++ ++ TYN L   + RA R  + K + + M + G+ PN  +Y +L
Sbjct: 335 DKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTL 394

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  +       +   ++REM   G + S+  YN ++      G   EA E F++    + 
Sbjct: 395 ISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREA-ERFKNEMEKKG 453

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             PD +++++++      GKV  A  +F EM + G +PNL   T+LI    K  R+++  
Sbjct: 454 LVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAF 513

Query: 467 RALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 499
           +  + +   G+TPDD     L+  +    K+ +
Sbjct: 514 QLYDNMLGDGLTPDDALYSALVGSLHTDKKQNV 546



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 150/335 (44%), Gaps = 1/335 (0%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           DTAA  L         S   +  +V +  + K   +  A +L D+M   GVK + + +++
Sbjct: 124 DTAADLLKQAATSCPDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNS 183

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           L+         ++  E  + M + G +P   TY+ ++D    A ++     +++  +++ 
Sbjct: 184 LLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKN 243

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
              D   +S++I  Y  AGN      V++E    G++PN  TY  L++   +  +    +
Sbjct: 244 LSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAE 303

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            +  +M   G+  N   + +++  Y R    +  L +   M++ G++L V  YNTL    
Sbjct: 304 MLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGL 363

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
                 DEA  +   M   +  +P+  +++++I+I    G + EA  +F EM   G EP+
Sbjct: 364 RRANRMDEAKNLLRIM-IEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPS 422

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           L     ++  Y K     +  R  N + + G+ PD
Sbjct: 423 LVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPD 457



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 58/117 (49%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A   ++ YNV M  + K   + +AER  ++M  +G+ PD  +++ L+    +N   + A+
Sbjct: 419 AEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVAL 478

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
             FE M   G  P+ + Y+++I    + G  E AF LYD    +    D   +S L+
Sbjct: 479 RLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALV 535


>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
          Length = 790

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 164/347 (47%), Gaps = 35/347 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +++  K    D++  LF +M ++G  P+ + ++T+I     N + +K +  F +M 
Sbjct: 330 YTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMV 389

Query: 228 SFGCDPDALTYSSMID---AYGRAGNVEMAFGLYDRARN------------------EKW 266
              C P+  T+S +++   A G+ G ++    + ++  N                  E  
Sbjct: 390 ENNCRPNGFTFSVILNVLVAEGQLGRLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASEAH 449

Query: 267 RI-------------DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           R+             D +A+ ++++    AG     L++  ++    +  + + YN +L 
Sbjct: 450 RLLHLQYDWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLS 509

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
            +G+ K+   +  +Y++M  +G SP+  +Y  L+ ++GRA   E+ + ++ E++    + 
Sbjct: 510 ALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKP 569

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
            +  +N+L+      G  DEA   F++M+  E   PD  T+S++I       KV  A  +
Sbjct: 570 DIISFNSLINCLGKNGDIDEAHMRFKEMRE-EGLSPDVVTYSTLIECFGKTDKVEMACRL 628

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           F+EML  G  PN+     L+ C  ++ RT + V    +L + G+TPD
Sbjct: 629 FDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPD 675



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 104/202 (51%)

Query: 147 TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           T AL L    ++ + S + ++YN  +    K +       L++ M   G  PD  +++ L
Sbjct: 483 TEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNIL 542

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
           IS         +AV+ FE + +  C PD ++++S+I+  G+ G+++ A   +   R E  
Sbjct: 543 ISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGL 602

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             D   +STLI+ +G     +    +++EM A G  PN++TYN LLD + R+ R  +   
Sbjct: 603 SPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVD 662

Query: 327 IYKEMTDNGLSPNWNTYASLLR 348
           +Y ++   GL+P+  TYA L R
Sbjct: 663 LYAKLKQQGLTPDSITYAVLER 684



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 99/195 (50%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           L   + ++ +  D V ++T++S        +   + +E+M   G  PD  +Y+ +I ++G
Sbjct: 488 LLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFG 547

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           RAG VE A  +++   N   + D  +F++LI   G  G+ D     ++EM+  G+ P+++
Sbjct: 548 RAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVV 607

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TY+ L++  G+  +      ++ EM   G SPN  TY  LL    R+    + + +Y ++
Sbjct: 608 TYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKL 667

Query: 367 KEKGMQLSVTLYNTL 381
           K++G+      Y  L
Sbjct: 668 KQQGLTPDSITYAVL 682



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 43/266 (16%)

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           + ++M+  GV+ ++ T N L+   G       V+  +  +    L  N  TY  LL+A+ 
Sbjct: 180 ILDDMERCGVRGSISTINILIGIFGGGA---DVERCFDLVKKWDLQMNCYTYKCLLQAHL 236

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT------------------- 391
           R+        VY E++ +G +L +  YN LL A+  D   T                   
Sbjct: 237 RSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKLTWNLLLVCLQIAELLDCLTV 296

Query: 392 ------------DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
                       D+ + +F+DMK  ++C+PD +T++ MI +    GK  E+  +F EM E
Sbjct: 297 ALDNDKIISVEVDQVYMVFKDMKR-KHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTE 355

Query: 440 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 499
            G+ PNL    ++IQ     +  D  +   +++ E    P+      +LNV+    + +L
Sbjct: 356 KGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVL--VAEGQL 413

Query: 500 GKLVECVEKSN-----SKLGYVVKLL 520
           G+L E VE SN     S   Y+V+ L
Sbjct: 414 GRLDEVVEVSNKFMNKSIYAYLVRTL 439



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 102/225 (45%), Gaps = 40/225 (17%)

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYE 294
           T + +I  +G   +VE  F L      +KW +  N ++   L++ +  + N +    VY 
Sbjct: 195 TINILIGIFGGGADVERCFDLV-----KKWDLQMNCYTYKCLLQAHLRSNNSNKAFEVYV 249

Query: 295 EMKAIGVKPNMITYNNLLDTMGR-AKRPW------------------------------- 322
           E++  G K ++  YN LLD + +  K  W                               
Sbjct: 250 ELRRRGYKLDIFAYNMLLDALAKDNKLTWNLLLVCLQIAELLDCLTVALDNDKIISVEVD 309

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           QV  ++K+M      P+  TY  ++R  G+    +++L++++EM EKG   ++  YNT++
Sbjct: 310 QVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMI 369

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
              A+    D+   +F  M  + NC+P+ +TFS ++ +    G++
Sbjct: 370 QALANNRMVDKTIFLFSKMVEN-NCRPNGFTFSVILNVLVAEGQL 413



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 60/116 (51%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I +N  +    K  D+D+A   F +M + G+ PD VT+STLI C    +    A   F
Sbjct: 570 DIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLF 629

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           + M + GC P+ +TY+ ++D   R+G    A  LY + + +    D   ++ L +L
Sbjct: 630 DEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLERL 685


>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
 gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 287

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 139/279 (49%), Gaps = 1/279 (0%)

Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
           T++T+IS    +    +A+E    M S G D +  TYS++++   +A  +++A  +Y + 
Sbjct: 2   TYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQM 61

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
             E    +   ++ LI +  +         +   +   G++  + TYN ++    ++ +P
Sbjct: 62  LEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQP 121

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
            Q   +Y++M   G+ P+  TY +L+ AYG+    E  L ++R+M  +G + +V  Y++L
Sbjct: 122 EQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSL 181

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           ++ C   G  + A E+F  M   ENC+P+  T++S+I  CS  G   +A  +F +M   G
Sbjct: 182 ISACEKAGRWEMALELFSKMHK-ENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQG 240

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +P+      LI  Y +  +    ++A  ++   G  PD
Sbjct: 241 CKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHPD 279



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 141/276 (51%), Gaps = 3/276 (1%)

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALT 237
           + L +A  L  +M  RG+  +  T+S L++ C + N L + A + +++M   GC P+ +T
Sbjct: 14  QQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANEL-DLAQDVYKQMLEEGCSPNLVT 72

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           Y+ +ID             L         + +   ++T+I     +G  +  L VYE+M 
Sbjct: 73  YNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQPEQALKVYEKML 132

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
           A GVKP+  TY  L+   G+  +  +   I+++M   G   N  TY+SL+ A  +A   E
Sbjct: 133 AAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSLISACEKAGRWE 192

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
             L ++ +M ++  + +V  YN+L+A C+  G+ ++A E+FE M+ ++ C+PDS T+  +
Sbjct: 193 MALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQ-TQGCKPDSITYCGL 251

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           IT     G+   A   F +M   G  P+  V  SL+
Sbjct: 252 ITAYERGGQWRRALKAFEQMQSQGCHPDAAVFNSLM 287



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 110/221 (49%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  ++ YN+ + V    R   +  RL   ++  G++ +  T++T+IS    +  P +A++
Sbjct: 67  SPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQPEQALK 126

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            +E+M + G  P A TY+++I AYG+ G VE A  ++          +   +S+LI    
Sbjct: 127 VYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSLISACE 186

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AG ++  L ++ +M     KPN++TYN+L+          +   ++++M   G  P+  
Sbjct: 187 KAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQGCKPDSI 246

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           TY  L+ AY R       L  + +M+ +G      ++N+L+
Sbjct: 247 TYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAAVFNSLM 287



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 117/254 (46%), Gaps = 1/254 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  Y+  M V  K  +LD A+ ++  ML+ G  P+ VT++ LI          +      
Sbjct: 35  VHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVEASKRKTTERRRLAV 94

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G   +  TY+++I A  ++G  E A  +Y++      +     ++ LI  YG  G
Sbjct: 95  ALVRSGIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKG 154

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +  L+++ +M   G + N+ITY++L+    +A R      ++ +M      PN  TY 
Sbjct: 155 QVEKALDIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTYN 214

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL+ A     + E    ++ +M+ +G +     Y  L+      G    A + FE M+ S
Sbjct: 215 SLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQ-S 273

Query: 405 ENCQPDSWTFSSMI 418
           + C PD+  F+S++
Sbjct: 274 QGCHPDAAVFNSLM 287



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 2/129 (1%)

Query: 151 ALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL  F + ++    + VI Y+  +    K    + A  LF  M     KP+ VT+++LI+
Sbjct: 159 ALDIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIA 218

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    KA E FE+M + GC PD++TY  +I AY R G    A   +++ +++    
Sbjct: 219 ACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHP 278

Query: 269 DPNAFSTLI 277
           D   F++L+
Sbjct: 279 DAAVFNSLM 287



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 150 LALTYFT--NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           +AL  F+  +K      V+ YN  +         +KA  LF+ M  +G KPD++T+  LI
Sbjct: 193 MALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLI 252

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +         +A++ FE+M S GC PDA  ++S++
Sbjct: 253 TAYERGGQWRRALKAFEQMQSQGCHPDAAVFNSLM 287



 Score = 42.7 bits (99), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           Y T+++ C        A E+  +M+S      +  T+S+++ +C    ++  A+ ++ +M
Sbjct: 3   YTTMISQCGSHQQLRRALELVAEMRS-RGIDCNVHTYSALMNVCIKANELDLAQDVYKQM 61

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           LE G  PNL     LI      ++T +  R    L   GI  + R
Sbjct: 62  LEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVR 106


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 154/292 (52%), Gaps = 2/292 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV-KPDNVTFSTLISCARMNNLPNKAVEW 222
           E I+Y+  ++ F    +L KA+ L  +M+ RG+ +P+ V F+++I+         +A + 
Sbjct: 471 EGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDI 530

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F+ +   G  PD +T++S+ID YG  G +E AFG+ D   +     D  +++TLI  Y  
Sbjct: 531 FDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCR 590

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G  D  L ++ EM + GVKP  ITY  +L  +    R    K +  EM ++G + + +T
Sbjct: 591 NGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDIST 650

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
              +L    R    ++ +++++++    ++ ++ + NT++     V   +EA E+F+ + 
Sbjct: 651 CGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSI- 709

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           S+    P++ T+  MI      G V EA+ MF+ M ++G  P+  +L  +I+
Sbjct: 710 SATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNYIIR 761



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 162/357 (45%), Gaps = 9/357 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF- 223
           V  YN+ M    + R       LF   L  G+K D +  S L+ C       +  V    
Sbjct: 119 VCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNLLL 178

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYG 281
            RMP  G +PD ++Y++++         + A  L      +     PN   ++T+I    
Sbjct: 179 HRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLF 238

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G      N++ EM   GV P+++TY +++D + +A+   + + + ++M  NG  PN  
Sbjct: 239 REGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKV 298

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY  ++  Y  +   ++T  ++REM  +G+  ++   N+ ++     G + EA E F+ M
Sbjct: 299 TYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSM 358

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
            +++  +P+  T+S ++   +  G   +   +FN M   G   +  V   +I  YGK   
Sbjct: 359 -AAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGM 417

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVK 518
            D+ +    ++ E G+ PD    G ++   ++     +G+L + ++K N  +   +K
Sbjct: 418 MDETMLIFTQMQEQGVIPDACTYGIVIAAFSR-----MGRLADAMDKFNQMIAMGLK 469



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 148/317 (46%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y   +    K R +DKAE +   M+  G +P+ VT++ +I    ++    +    F
Sbjct: 261 DVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMF 320

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M S G  P+ +T +S + +  + G  + A   +D    +  + +   +S L+  Y T 
Sbjct: 321 REMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATE 380

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G F   LN++  M+  G+  +   +N ++D  G+     +   I+ +M + G+ P+  TY
Sbjct: 381 GCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTY 440

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++ A+ R     D +  + +M   G++    +Y++L+      G   +A E+  +M S
Sbjct: 441 GIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMS 500

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               +P+   F+S+I      G+V EA  +F+ ++  G  P++    SLI  YG   + +
Sbjct: 501 RGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIE 560

Query: 464 DVVRALNRLPELGITPD 480
                L+ +   GI PD
Sbjct: 561 KAFGVLDAMISAGIEPD 577



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 158/365 (43%), Gaps = 9/365 (2%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A   FD M  +G KP+ VT+S L+            +  F  M   G   D   ++ +I
Sbjct: 350 EAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVI 409

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
           DAYG+ G ++    ++ + + +    D   +  +I  +   G     ++ + +M A+G+K
Sbjct: 410 DAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLK 469

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAY---GRARYGED 358
           P  I Y++L+          + K +  EM   G+  PN   + S++ +    GR     D
Sbjct: 470 PEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHD 529

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
                  + E+     V  +N+L+     VG  ++AF + + M S+   +PD  +++++I
Sbjct: 530 IFDFVIHIGERP---DVITFNSLIDGYGLVGKIEKAFGVLDAMISA-GIEPDVVSYNTLI 585

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 G++ +   +F EML  G +P       ++       RT    +  + + E G T
Sbjct: 586 DGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTT 645

Query: 479 PDDRFCGCLLNVMTQTP-KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 537
            D   CG +L  + +    +E   + + +   N K    +   + +   +   ++EA EL
Sbjct: 646 MDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKEL 705

Query: 538 FNSIS 542
           F+SIS
Sbjct: 706 FDSIS 710



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 93/198 (46%), Gaps = 2/198 (1%)

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
           EE +     P + TYN L+D   R +RP     ++      GL  +    + LL+    A
Sbjct: 108 EEARPRVALPTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHA 167

Query: 354 RYGEDTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDS 411
           +  +D ++ +   M E G++     YNT++    +   +  A ++   M K S  C P+ 
Sbjct: 168 KRSDDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNV 227

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            T++++I      G+VS+A  +F+EM++ G  P++   TS+I    KA+  D     L +
Sbjct: 228 VTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQ 287

Query: 472 LPELGITPDDRFCGCLLN 489
           +   G  P+     C+++
Sbjct: 288 MISNGFQPNKVTYNCMIH 305



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 117/262 (44%), Gaps = 39/262 (14%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ +N  +    K   + +A  +FD ++  G +PD +TF++LI    +     KA    +
Sbjct: 508 IVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLD 567

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG--- 281
            M S G +PD ++Y+++ID Y R G ++    L+    ++   + P   +  I L+G   
Sbjct: 568 AMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKG--VKPTTITYGIILHGLFN 625

Query: 282 ------------------------TAGNFDG--CLN--------VYEEMKAIGVKPNMIT 307
                                   T G   G  C N        +++++ A+ VK N+  
Sbjct: 626 DGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAI 685

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
            N ++D M + ++  + K ++  ++  GL PN +TY  +++   +    E+  +++  M+
Sbjct: 686 INTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLME 745

Query: 368 EKGMQLSVTLYNTLLAMCADVG 389
           + G   S  L N ++ +  + G
Sbjct: 746 KSGCAPSSRLLNYIIRVLLEKG 767


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 139/331 (41%), Gaps = 36/331 (10%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y++ +    K R+ D A  L  +M+  G   D + +   I          KA   F+ 
Sbjct: 316 VAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDG 375

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M +FG  P A  Y+S+I+ + R  NV   + L    +     I P  + T +K   ++G+
Sbjct: 376 MITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGD 435

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            DG  N+ +EM A G +PN++ Y  L+ T  +  R      + KEM + G++P+   Y S
Sbjct: 436 LDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNS 495

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+    +A+  ++  S   EM E G                                   
Sbjct: 496 LIIGLSKAKKMDEARSFLLEMVENGF---------------------------------- 521

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +PD++T+ + I+     G+ + A+    EMLE G  PN  + T LI  Y K  +  + 
Sbjct: 522 --KPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEA 579

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
             A   + E GI  D +    L+N + +  K
Sbjct: 580 CSAFRSMVEQGILGDAKTYTVLMNGLVKNGK 610



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 137/305 (44%), Gaps = 4/305 (1%)

Query: 188 FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
           F  M+++G+  D  T++ L++    N   N A E F  M   G  PD  +Y ++ID + +
Sbjct: 583 FRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSK 642

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
            GN++ A  ++D         +   ++ L+  +  +G  +    + +EM   G  PN +T
Sbjct: 643 LGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVT 702

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           Y  ++D   ++    +   ++ EM   GL P+   Y +L+    R    E  ++++ E  
Sbjct: 703 YCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-ETN 761

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE---DMKSSENCQPDSWTFSSMITICSCR 424
           EKG   S   +N L+      G T+   ++     D    +  +P+  T++ MI      
Sbjct: 762 EKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKE 821

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
           G +  A+ +F+ M +A   P +   TSL+  Y K  R  ++    + +   GI PD+   
Sbjct: 822 GNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMY 881

Query: 485 GCLLN 489
             ++N
Sbjct: 882 SVIIN 886



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 154/331 (46%), Gaps = 14/331 (4%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERM 226
           Y V M    K   ++ AE +F +M  +G+ PD  ++ TLI   +++ N+  KA   F+ M
Sbjct: 598 YTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNM-QKASSIFDEM 656

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G   + + Y+ ++  + R+G +E A  L D    + +  +   + T+I  Y  +G+ 
Sbjct: 657 VQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDL 716

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                +++EMK  G+ P+   Y  L+D   R     +  TI+ E  + G + +   + +L
Sbjct: 717 AEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-ETNEKGCASSSAPFNAL 775

Query: 347 LR---AYGRARYGEDTLSVYRE--MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           +     +G+     D ++   +    + G    VT YN ++      G  + A E+F  M
Sbjct: 776 INWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVT-YNIMIDYLCKEGNLEAAKELFHHM 834

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           + + N  P   T++S++      G+ SE  ++F+E++ AG EP+  + + +I  + K   
Sbjct: 835 QKA-NLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGM 893

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           T   +  L+++       D    GC L++ T
Sbjct: 894 TTKALVLLDQMFAKNAVDD----GCKLSIST 920



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 141/315 (44%), Gaps = 27/315 (8%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI+YN+ +  F +  +++KA+ L D+M  +G  P+ VT+ T+I     +    +A + F+
Sbjct: 665 VIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFD 724

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA-FSTLIKLYGTA 283
            M   G  PD+  Y++++D   R  +VE A  +++   NEK     +A F+ LI      
Sbjct: 725 EMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFET--NEKGCASSSAPFNALINWVFKF 782

Query: 284 GN-----------FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           G             DG  + +        KPN +TYN ++D + +       K ++  M 
Sbjct: 783 GKTELTTDMINRLMDGSFDKFG-------KPNDVTYNIMIDYLCKEGNLEAAKELFHHMQ 835

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
              L P   TY SLL  Y +     +  SV+ E+   G++    +Y+ ++      G T 
Sbjct: 836 KANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTT 895

Query: 393 EAFEIFEDMKSS----ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           +A  + + M +     + C+    T  ++++  +  G++  AE +   M+   + P+   
Sbjct: 896 KALVLLDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVVENMVRLKYIPDSST 955

Query: 449 LTSLIQ--CYGKAQR 461
           +  LI   C    QR
Sbjct: 956 VIELINESCISSNQR 970



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 119/265 (44%), Gaps = 3/265 (1%)

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           ++A+E  + M   G  P   +Y+ +ID   +   +E A  L     +     D  A+S L
Sbjct: 262 DEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSIL 321

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           I       N D    +  EM + G   + + Y+  +  M +     + K ++  M   G+
Sbjct: 322 IDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGV 381

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAF 395
           +P    YASL+  + R +       +  E+K++ + +S   Y T +  MC+  G  D A+
Sbjct: 382 TPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSS-GDLDGAY 440

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            I ++M +S  C+P+   ++++I     + +  +A  +  EM E G  P+ F   SLI  
Sbjct: 441 NIVKEMGAS-GCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIG 499

Query: 456 YGKAQRTDDVVRALNRLPELGITPD 480
             KA++ D+    L  + E G  PD
Sbjct: 500 LSKAKKMDEARSFLLEMVENGFKPD 524



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 146/364 (40%), Gaps = 57/364 (15%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDM--LDRGVKPDNVTFSTLISCARMNNLPN 217
           K+   V+L+ + +  + +   LD+A  +F     LD  + P     + L+      N  +
Sbjct: 147 KSDDRVLLFGILIDGYIEKGFLDEAVFVFSSTKDLDLDLVPSLARCNHLLDALLKRNRLD 206

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
              + ++ M       D  +Y  +I A+ R GNV++A  +  +   E             
Sbjct: 207 LFWDVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEE------------- 253

Query: 278 KLYGTAG-NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
              GTA  N D  L + + M   G+ P+  +YN L+D + + KR    K++  EM   GL
Sbjct: 254 --LGTATLNVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGL 311

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
             +   Y+ L+    + R  +    +  EM   G  +   +Y+  + + +  G  ++A  
Sbjct: 312 FADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKA 371

Query: 397 IFEDMKSSENCQPDSWTFSSMIT------------------------------------I 420
           +F+ M +     P +  ++S+I                                     +
Sbjct: 372 LFDGMITF-GVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGM 430

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           CS  G +  A  +  EM  +G  PN+ + T+LI+ + +  R  D VR L  + E GI P 
Sbjct: 431 CS-SGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAP- 488

Query: 481 DRFC 484
           D FC
Sbjct: 489 DTFC 492


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 151/313 (48%), Gaps = 1/313 (0%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D+++A  LF++   +G+KPD V +++L+    +  L   A++    M   GC PD  TY+
Sbjct: 341 DVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYN 400

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +I+   + GN+  A  + + A  + +  D   F+TLI  Y      D  L + E M   
Sbjct: 401 IVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEY 460

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G+ P+ ITYN++L+ + +A +  +V   ++EM   G  PN  TY  L+  + R+   E+ 
Sbjct: 461 GIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEA 520

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
             V  +M ++G+      +NTL+      G  + A+ +F+ ++  +     + TF+++I 
Sbjct: 521 SKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLE-EKGYSATADTFNTLIG 579

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             S +  +  AE +F+EML  G   + +    LI    K    D     L  + + G  P
Sbjct: 580 AFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIP 639

Query: 480 DDRFCGCLLNVMT 492
                G ++N +T
Sbjct: 640 SMSTFGRVINSLT 652



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 136/303 (44%), Gaps = 3/303 (0%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A  +V+ YN  ++   K     +A      M+++G  PD+ T++T+I      ++  +A 
Sbjct: 252 AVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEAT 311

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E  +     G  PD +TY S+I+     G+VE A  L++ A+ +  + D   +++L+K  
Sbjct: 312 ELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGL 371

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G     L V  EM   G  P++ TYN +++ + +         +  +    G  P+ 
Sbjct: 372 CLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDV 431

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            T+ +L+  Y +    +  L +   M E G+      YN++L      G  +E  E F++
Sbjct: 432 FTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQE 491

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M   + C P+  T++ +I       K+ EA  +  +M + G  P+     +LI  YG  +
Sbjct: 492 M-ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLI--YGFCR 548

Query: 461 RTD 463
             D
Sbjct: 549 NGD 551



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/395 (20%), Positives = 155/395 (39%), Gaps = 68/395 (17%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD---------------------------- 199
           YN  M         D+A +++  ML  GV PD                            
Sbjct: 89  YNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALP 148

Query: 200 ---NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256
               V + T++     +   + A + F++M      P+   ++ ++ A  + G+V  A  
Sbjct: 149 HRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGL 208

Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           L  +       I+   ++  I+    AG     + + + M+A  V P+++TYN L+  + 
Sbjct: 209 LLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLC 267

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-------------------------- 350
           +   P +     + M + G  P+  TY +++  Y                          
Sbjct: 268 KKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQV 327

Query: 351 -------GRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
                  G    G  E  L ++ E + KG++  + +YN+L+      G    A ++  +M
Sbjct: 328 TYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEM 387

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
            + E C PD  T++ +I      G +S+A  + N+ +  G+ P++F   +LI  Y K  +
Sbjct: 388 -AEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLK 446

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
            D  ++ + R+ E GI PD      +LN + +  K
Sbjct: 447 LDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGK 481



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 7/221 (3%)

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
           R+R     I P  +   I+ Y  AG     ++ +E M      P    YN ++D +  A 
Sbjct: 42  RSRLSPATIHP-LYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAA 100

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
              Q   +Y  M   G+SP+ +T+   LR++         L + R +  +G     T+  
Sbjct: 101 YHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVC 160

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
            L A     G+T +A ++F+ M  + +  P+   F+ ++     RG V EA  +  ++++
Sbjct: 161 GLYAH----GHTHDARQLFDQMLHT-HVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQ 215

Query: 440 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            G   NLF     I+   +A R  + VR ++ +    + PD
Sbjct: 216 RGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PD 255



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/336 (20%), Positives = 124/336 (36%), Gaps = 66/336 (19%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR------------------ 260
           AV+ FERM  F C P A  Y++++DA   A   + A  +Y R                  
Sbjct: 70  AVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLR 129

Query: 261 -----ARNEK----WRIDPN----AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
                AR        R  P+    A+ T++      G+      ++++M    V PN+  
Sbjct: 130 SFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAA 189

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLS------------------------------ 337
           +N +L  + +     +   +  ++   G+S                              
Sbjct: 190 FNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMR 249

Query: 338 ----PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
               P+  TY +L+R   +    ++ +   R M  +G       YNT++     +    E
Sbjct: 250 AYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQE 309

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A E+ +D    +   PD  T+ S+I      G V  A  +FNE    G +P++ V  SL+
Sbjct: 310 ATELLKD-AVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLV 368

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           +           ++ +N + E G  PD +    ++N
Sbjct: 369 KGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVIN 404



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 79/173 (45%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I YN+ ++ F +   +++A ++   M   G+ PD V+F+TLI     N     A   F++
Sbjct: 502 ITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQK 561

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +   G    A T++++I A+    N+ MA  ++D   ++  R D   +  LI       N
Sbjct: 562 LEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTAN 621

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            D       EM   G  P+M T+  +++++    R +Q   I   M   G+ P
Sbjct: 622 VDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 674



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 15/178 (8%)

Query: 144 NPDTAALALTYF--TNKLKASKEVIL-------------YNVTMKVFRKCRDLDKAERLF 188
           NP T  + +  F  +NK++ + +VI+             +N  +  F +  DL+ A  LF
Sbjct: 500 NPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 559

Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
             + ++G      TF+TLI         + A + F+ M S G   D+ TY  +ID   + 
Sbjct: 560 QKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKT 619

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
            NV+ A+        + +    + F  +I            + +   M  IGV P ++
Sbjct: 620 ANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVV 677


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 197/469 (42%), Gaps = 43/469 (9%)

Query: 43  KRSVSLQETQSSNPTKHSQNPQYPHG--KTGSSPKSYIWVNPKSPRASKLKEKSYDTRYN 100
           KR +++  T+  NP     N    HG    G    +Y   N  +   S     +Y+    
Sbjct: 326 KRIINMMMTEGCNPNPSLFN-SLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIG 384

Query: 101 SLVKLAADLDSCSATE---DDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTN 157
           S+         C   E    ++  ++  + ++ L   CV+   N  N       +  F  
Sbjct: 385 SI---------CGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEK 435

Query: 158 KLKASKEVI---------LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
             +  KE++          Y   +    + + ++K+  LF +M   GV PD  T++ LI 
Sbjct: 436 AFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILID 495

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 L  +A  WF+ M S GC P+ +TY++++ AY ++  +  A  ++ R  +     
Sbjct: 496 SFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYP 555

Query: 269 DPNAFSTLI-----------------KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           +   +S LI                 KL GT+GN +     +E      + PN++TY  L
Sbjct: 556 NAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDF-YFEGNDTCTIAPNVVTYGAL 614

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +D + +A++      +   M   G  PN   Y +L+  + +    ++   V+  M + G 
Sbjct: 615 IDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGY 674

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
             SV  Y +L+      G  D A ++  +M  +++C P+  T+++MI   S  G++ +A 
Sbjct: 675 LPSVHTYTSLIDRMFKDGRLDLAMKVLSEML-NDSCNPNVVTYTAMIDGLSKVGEIEKAL 733

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            + + M E G  PN+   T+LI   GK  + D  ++   ++   G  P+
Sbjct: 734 NLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPN 782



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 121/283 (42%), Gaps = 9/283 (3%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           + P+ VT+  LI         + A E  + M + GC+P+ + Y ++ID + + G ++ A 
Sbjct: 604 IAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQ 663

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            ++ R     +    + +++LI      G  D  + V  EM      PN++TY  ++D +
Sbjct: 664 EVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGL 723

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +     +   +   M + G SPN  TY +L+   G+    + +L ++++M  KG   + 
Sbjct: 724 SKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNY 783

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG---KVSEAEA 432
             Y  L+  C   G  DEA  + ++MK +       W        C+ +G   K   +  
Sbjct: 784 VTYRVLINHCCAAGLLDEAHLLLDEMKHTH------WPKHLQGYHCAVQGFSKKFIASLG 837

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           +  EM      P   V   LI  + KA R +  +     L E+
Sbjct: 838 LLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEV 880



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 133/304 (43%), Gaps = 4/304 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y+  +  F K   +D A+ +F  M   G  P   T+++LI     +   + A++    
Sbjct: 644 IVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSE 703

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M +  C+P+ +TY++MID   + G +E A  L      +    +   ++ LI   G  G 
Sbjct: 704 MLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGK 763

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D  L ++++M + G  PN +TY  L++    A    +   +  EM       +   Y  
Sbjct: 764 ADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHC 823

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM--KS 403
            ++ + +      +L +  EM+         +Y  L+   +  G  + A E+ +++   S
Sbjct: 824 AVQGFSKKFIA--SLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVS 881

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S      +  ++S+I       +V EA  ++ EM   G  P+L V  SL++   +  + D
Sbjct: 882 SSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWD 941

Query: 464 DVVR 467
           + ++
Sbjct: 942 EALQ 945



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 114/236 (48%), Gaps = 5/236 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y   +    K  +++KA  L   M ++G  P+ VT++ LI         + +++ F+
Sbjct: 713 VVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFK 772

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M S GC P+ +TY  +I+    AG ++ A  L D  ++  W      +   ++  G + 
Sbjct: 773 QMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQ--GFSK 830

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT-- 342
            F   L + EEM++    P    Y  L+D+  +A R      ++KE+ +   S N  +  
Sbjct: 831 KFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTG 890

Query: 343 -YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
            YASL++A   A   E+  ++Y EM  KG+   + ++ +L+    +V   DEA ++
Sbjct: 891 MYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQL 946



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 135/346 (39%), Gaps = 77/346 (22%)

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF------------- 255
           C R + L ++A+E   R+  FG  P A+TY++++     AG VEM F             
Sbjct: 179 CCR-HGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCM 237

Query: 256 -----GLYDRA--------------RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
                G + +A                E + +D    + +I     A  F+  ++    M
Sbjct: 238 DRSTIGYFAQALCKVGRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRM 297

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY------ 350
           +     PN++TY  LL    + K+    K I   M   G +PN + + SL+  Y      
Sbjct: 298 RCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDY 357

Query: 351 -----------------GRARY--------GEDTL----------SVYREMKEKGMQLS- 374
                            G   Y        G++ L           VY EM      L+ 
Sbjct: 358 AYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNK 417

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           V   N    +C  VG  ++AF+I ++M   +   PD+ T++ +IT      KV ++  +F
Sbjct: 418 VNTANFSRCLCG-VGKFEKAFQILKEMM-RKGFVPDTSTYTKVITFLCQAKKVEKSFLLF 475

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            EM  AG  P+++  T LI  + KA   +      + +  +G +P+
Sbjct: 476 QEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPN 521


>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 924

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 158/357 (44%), Gaps = 1/357 (0%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           C+I L       + AL ++           +  Y++ +  F K +D   A  +F+D++  
Sbjct: 486 CLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKD 545

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G+KPD V ++ +I         ++A+   + M      P + T+  +I  + RAG ++ A
Sbjct: 546 GLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRA 605

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             ++D  R        + F+ LI         +  + + +EM   GV PN  TY  ++  
Sbjct: 606 LDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHG 665

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
                   +    + ++ D GL  +  TY +LL+A  ++   +  L+V +EM  + +  +
Sbjct: 666 YAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRN 725

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
             +YN L+   A  G   EA ++ + MK     +PD  T++S I  C   G +  A  M 
Sbjct: 726 TFVYNILIDGWARRGDVWEAADLMQQMKQG-GVKPDIHTYTSFINACCKAGDMLRASKMM 784

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            EM  +G +PN+   T+LI  + +A   +  +R    +   G+ PD     CL+  +
Sbjct: 785 EEMETSGVKPNVKTYTTLIHGWARASLPEKALRCFQEMKLAGLKPDKAVYHCLMTAL 841



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 152/316 (48%), Gaps = 3/316 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFER 225
           +Y   +  +   RD+++A      M + GV+   VT+S ++   A++ N  + A  WF+ 
Sbjct: 343 VYTSLIHAYAVGRDMEEALSCARKMKEEGVEMSLVTYSIIVGGFAKIGN-ADAADRWFKE 401

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
                   +A+ Y +MI AY +  N++ A  L      E      + + T++  Y   GN
Sbjct: 402 AKDRHSHMNAIIYGNMIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGN 461

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            + CL V+E +K  G  P++++Y  L++   +  +  +   + K M   G+  N  TY+ 
Sbjct: 462 EEKCLTVFERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSM 521

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  + + +   +  +++ ++ + G++  V LYN ++     +G  D A  + ++M+  E
Sbjct: 522 LINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQ-KE 580

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +P S TF  +I   +  G++  A  +F+ M  +G  P +    +LI    + ++ +  
Sbjct: 581 RHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKA 640

Query: 466 VRALNRLPELGITPDD 481
           +  L+ +   G++P++
Sbjct: 641 IEILDEMALAGVSPNE 656



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 133/294 (45%), Gaps = 7/294 (2%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F +  ++ +A  +FD M   G  P   TF+ LI          KA+E  + M   G  P+
Sbjct: 596 FARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPN 655

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
             TY++++  Y   G+   AF  + + R+E  ++D   +  L+K    +G     L V +
Sbjct: 656 EHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTK 715

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           EM A  +  N   YN L+D   R    W+   + ++M   G+ P+ +TY S + A  +A 
Sbjct: 716 EMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAG 775

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
                  +  EM+  G++ +V  Y TL+   A     ++A   F++MK +   +PD   +
Sbjct: 776 DMLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLPEKALRCFQEMKLA-GLKPDKAVY 834

Query: 415 SSMITICSCRGKVSEAE------AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
             ++T    R  V+EA       ++  EM+E+G   ++       +   K +RT
Sbjct: 835 HCLMTALLSRATVTEAYVRPGILSICKEMIESGLIVDMGTAVHWSKSLRKIERT 888



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 179/412 (43%), Gaps = 7/412 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ Y++ +  F K  + D A+R F +  DR    + + +  +I         ++A     
Sbjct: 376 LVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQAEALVR 435

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G D     Y +M+D Y   GN E    +++R +   +     ++  LI LY   G
Sbjct: 436 EMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAKVG 495

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                L V + M++ G+K NM TY+ L++   + K       I++++  +GL P+   Y 
Sbjct: 496 KISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYN 555

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +++RA+      +  + + +EM+++  + +   +  ++   A  G    A ++F+ M+ S
Sbjct: 556 NIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRS 615

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
             C P   TF+++I     + ++ +A  + +EM  AG  PN    T+++  Y     T  
Sbjct: 616 -GCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGK 674

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE--LGKLVECVEKSNSKLGYVVKLLLE 522
                 +L + G+  D      LL    ++ + +  L    E   ++  +  +V  +L++
Sbjct: 675 AFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILID 734

Query: 523 EQDIEGDFKKEATELFNSISKDVKKAYCNC---LIDLCVNLNLLENACKLLE 571
                GD   EA +L   + +   K   +     I+ C     +  A K++E
Sbjct: 735 GWARRGDV-WEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMME 785



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 126/266 (47%), Gaps = 3/266 (1%)

Query: 192 LDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
            +R  KP    +  ++S  AR  ++ ++A + FE M + G +P +  Y+S+I AY    +
Sbjct: 298 FERIKKPSRREYGLMVSYYARRGDM-HRARQTFESMRARGIEPTSHVYTSLIHAYAVGRD 356

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
           +E A     + + E   +    +S ++  +   GN D     ++E K      N I Y N
Sbjct: 357 MEEALSCARKMKEEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGN 416

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           ++    +     Q + + +EM   G+    + Y +++  Y      E  L+V+  +KE G
Sbjct: 417 MIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECG 476

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
              SV  Y  L+ + A VG   +A E+ + M+S+   + +  T+S +I         + A
Sbjct: 477 FAPSVVSYGCLINLYAKVGKISKALEVSKMMESA-GIKHNMKTYSMLINGFLKLKDWANA 535

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCY 456
            A+F ++++ G +P++ +  ++I+ +
Sbjct: 536 FAIFEDVVKDGLKPDVVLYNNIIRAF 561


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 151/313 (48%), Gaps = 1/313 (0%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D+++A  LF++   +G+KPD V +++L+    +  L   A++    M   GC PD  TY+
Sbjct: 340 DVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYN 399

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +I+   + GN+  A  + + A  + +  D   F+TLI  Y      D  L + E M   
Sbjct: 400 IVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEY 459

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G+ P+ ITYN++L+ + +A +  +V   ++EM   G  PN  TY  L+  + R+   E+ 
Sbjct: 460 GIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEA 519

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
             V  +M ++G+      +NTL+      G  + A+ +F+ ++  +     + TF+++I 
Sbjct: 520 SKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLE-EKGYSATADTFNTLIG 578

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             S +  +  AE +F+EML  G   + +    LI    K    D     L  + + G  P
Sbjct: 579 AFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIP 638

Query: 480 DDRFCGCLLNVMT 492
                G ++N +T
Sbjct: 639 SMSTFGRVINSLT 651



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 136/303 (44%), Gaps = 3/303 (0%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A  +V+ YN  ++   K     +A      M+++G  PD+ T++T+I      ++  +A 
Sbjct: 251 AVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEAT 310

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E  +     G  PD +TY S+I+     G+VE A  L++ A+ +  + D   +++L+K  
Sbjct: 311 ELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGL 370

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G     L V  EM   G  P++ TYN +++ + +         +  +    G  P+ 
Sbjct: 371 CLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDV 430

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            T+ +L+  Y +    +  L +   M E G+      YN++L      G  +E  E F++
Sbjct: 431 FTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQE 490

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M   + C P+  T++ +I       K+ EA  +  +M + G  P+     +LI  YG  +
Sbjct: 491 M-ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLI--YGFCR 547

Query: 461 RTD 463
             D
Sbjct: 548 NGD 550



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/395 (20%), Positives = 155/395 (39%), Gaps = 68/395 (17%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD---------------------------- 199
           YN  M         D+A +++  ML  GV PD                            
Sbjct: 88  YNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALP 147

Query: 200 ---NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256
               V + T++     +   + A + F++M      P+   ++ ++ A  + G+V  A  
Sbjct: 148 HRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGL 207

Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           L  +       I+   ++  I+    AG     + + + M+A  V P+++TYN L+  + 
Sbjct: 208 LLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLC 266

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-------------------------- 350
           +   P +     + M + G  P+  TY +++  Y                          
Sbjct: 267 KKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQV 326

Query: 351 -------GRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
                  G    G  E  L ++ E + KG++  + +YN+L+      G    A ++  +M
Sbjct: 327 TYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEM 386

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
            + E C PD  T++ +I      G +S+A  + N+ +  G+ P++F   +LI  Y K  +
Sbjct: 387 -AEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLK 445

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
            D  ++ + R+ E GI PD      +LN + +  K
Sbjct: 446 LDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGK 480



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 7/221 (3%)

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
           R+R     I P  +   I+ Y  AG     ++ +E M      P    YN ++D +  A 
Sbjct: 41  RSRLSPATIHP-LYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAA 99

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
              Q   +Y  M   G+SP+ +T+   LR++         L + R +  +G     T+  
Sbjct: 100 YHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVC 159

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
            L A     G+T +A ++F+ M  + +  P+   F+ ++     RG V EA  +  ++++
Sbjct: 160 GLYAH----GHTHDARQLFDQMLHT-HVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQ 214

Query: 440 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            G   NLF     I+   +A R  + VR ++ +    + PD
Sbjct: 215 RGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PD 254



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/336 (20%), Positives = 124/336 (36%), Gaps = 66/336 (19%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR------------------ 260
           AV+ FERM  F C P A  Y++++DA   A   + A  +Y R                  
Sbjct: 69  AVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLR 128

Query: 261 -----ARNEK----WRIDPN----AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
                AR        R  P+    A+ T++      G+      ++++M    V PN+  
Sbjct: 129 SFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAA 188

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLS------------------------------ 337
           +N +L  + +     +   +  ++   G+S                              
Sbjct: 189 FNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMR 248

Query: 338 ----PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
               P+  TY +L+R   +    ++ +   R M  +G       YNT++     +    E
Sbjct: 249 AYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQE 308

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A E+ +D    +   PD  T+ S+I      G V  A  +FNE    G +P++ V  SL+
Sbjct: 309 ATELLKD-AVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLV 367

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           +           ++ +N + E G  PD +    ++N
Sbjct: 368 KGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVIN 403



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 79/173 (45%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I YN+ ++ F +   +++A ++   M   G+ PD V+F+TLI     N     A   F++
Sbjct: 501 ITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQK 560

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +   G    A T++++I A+    N+ MA  ++D   ++  R D   +  LI       N
Sbjct: 561 LEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTAN 620

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            D       EM   G  P+M T+  +++++    R +Q   I   M   G+ P
Sbjct: 621 VDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 673



 Score = 41.6 bits (96), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 15/178 (8%)

Query: 144 NPDTAALALTYF--TNKLKASKEVIL-------------YNVTMKVFRKCRDLDKAERLF 188
           NP T  + +  F  +NK++ + +VI+             +N  +  F +  DL+ A  LF
Sbjct: 499 NPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 558

Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
             + ++G      TF+TLI         + A + F+ M S G   D+ TY  +ID   + 
Sbjct: 559 QKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKT 618

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
            NV+ A+        + +    + F  +I            + +   M  IGV P ++
Sbjct: 619 ANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVV 676


>gi|413921612|gb|AFW61544.1| hypothetical protein ZEAMMB73_526638 [Zea mays]
          Length = 456

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 146/323 (45%), Gaps = 1/323 (0%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           L  DM   G+     TFS +IS    + LP++AVE F R+P FGC      Y++++DA  
Sbjct: 131 LASDMRGLGLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLDALC 190

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
             GN   A+ L  R   +    D   FSTL+  +  AG         ++M   G++P + 
Sbjct: 191 ANGNFTGAYKLLRRMARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMAGRGLRPPVR 250

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
             + L+D + RA    Q K     MT  G+ P+  T+ SL  A   A   +  +S+  + 
Sbjct: 251 GRDLLVDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDVDFAVSLLADA 310

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
             +G+   ++ Y  +L   A VG  +EAF +F      +  +P    ++++I      G+
Sbjct: 311 SSRGLCPDISTYKVMLPAVAKVGKIEEAFRLFY-AAVEDGHRPFPSLYAAIIKALCKAGR 369

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            ++A A F +M   G  PN  V   L++   +  R  +    L  + E G TP       
Sbjct: 370 FADAFAFFGDMKTKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSEAGFTPRAPTFSA 429

Query: 487 LLNVMTQTPKEELGKLVECVEKS 509
           +++ +    K +L + +E +E S
Sbjct: 430 VVDGLRHCGKHDLARRLEQLEVS 452



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 1/252 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +YN  +       +   A +L   M  +GV PD  TFSTL+          +A  + + M
Sbjct: 181 VYNALLDALCANGNFTGAYKLLRRMARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDM 240

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G  P       ++D   RAG++E A     R   E    D   F++L +    AG+ 
Sbjct: 241 AGRGLRPPVRGRDLLVDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDV 300

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  +++  +  + G+ P++ TY  +L  + +  +  +   ++    ++G  P  + YA++
Sbjct: 301 DFAVSLLADASSRGLCPDISTYKVMLPAVAKVGKIEEAFRLFYAAVEDGHRPFPSLYAAI 360

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           ++A  +A    D  + + +MK KG   +  +Y  L+ MC   G   EA     +M S   
Sbjct: 361 IKALCKAGRFADAFAFFGDMKTKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEM-SEAG 419

Query: 407 CQPDSWTFSSMI 418
             P + TFS+++
Sbjct: 420 FTPRAPTFSAVV 431



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 3/156 (1%)

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AM 384
           ++  +M   GL  +  T+++++ +YG +R  +  + V+  +   G   +  +YN LL A+
Sbjct: 130 SLASDMRGLGLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLDAL 189

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
           CA+  +T  A+++   M + +   PD  TFS+++      GK+ EA+A  ++M   G  P
Sbjct: 190 CANGNFTG-AYKLLRRM-ARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMAGRGLRP 247

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +     L+    +A   +       R+ + GI PD
Sbjct: 248 PVRGRDLLVDGLVRAGHLEQAKAFALRMTKEGILPD 283



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 75/194 (38%), Gaps = 40/194 (20%)

Query: 159 LKASKEVIL-----YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
           L+ +KE IL     +N   +      D+D A  L  D   RG+ PD       IS     
Sbjct: 273 LRMTKEGILPDVATFNSLAEALCNAGDVDFAVSLLADASSRGLCPD-------IS----- 320

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
                                  TY  M+ A  + G +E AF L+  A  +  R  P+ +
Sbjct: 321 -----------------------TYKVMLPAVAKVGKIEEAFRLFYAAVEDGHRPFPSLY 357

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           + +IK    AG F      + +MK  G  PN   Y  L+    R  R  +      EM++
Sbjct: 358 AAIIKALCKAGRFADAFAFFGDMKTKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSE 417

Query: 334 NGLSPNWNTYASLL 347
            G +P   T+++++
Sbjct: 418 AGFTPRAPTFSAVV 431


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 158/326 (48%), Gaps = 3/326 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST-LISCARMNNLPNKAVEWF 223
           V  YN  +    K     +A+ + D+ML  G+ PD  T++  L+ C R +N+ + A   F
Sbjct: 428 VFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMD-AERIF 486

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + MPS G  PD +++S++I    + G ++ A   +   +N     D   ++ LI  +   
Sbjct: 487 DEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRN 546

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     L V +EM   G   +++TYN +L+ + + K   +   ++ EMT+ G+ P++ T+
Sbjct: 547 GVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTF 606

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+  Y +       ++++  M ++ ++  V  YNTL+         ++  E++ DM  
Sbjct: 607 TTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM-I 665

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S    P+  ++  +I      G VSEA  +++EM+E GFE  +    ++++ Y +A    
Sbjct: 666 SRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAV 725

Query: 464 DVVRALNRLPELGITPDDRFCGCLLN 489
                L+ +   GI PD      L+N
Sbjct: 726 KADEFLSNMLLKGIVPDGITYNTLIN 751



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 169/396 (42%), Gaps = 71/396 (17%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K+  S +   YN+ +    +  ++  AER+FD+M  +GV PD V+FS LI     N   +
Sbjct: 456 KIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 515

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID-------- 269
           +A+++F  M + G  PD + Y+ +I  + R G +  A  + D    +   +D        
Sbjct: 516 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTIL 575

Query: 270 -------------------------PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
                                    P+   F+TLI  Y   GN +  + ++E M    +K
Sbjct: 576 NGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLK 635

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P+++TYN L+D   +     +V  ++ +M    + PN  +Y  L+  Y       +   +
Sbjct: 636 PDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRL 695

Query: 363 YREMKEKGMQLSVTLYNTLL--------AMCAD---------------VGYT-------- 391
           + EM EKG + ++   NT++        A+ AD               + Y         
Sbjct: 696 WDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIK 755

Query: 392 ----DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
               D AF +   M++S    PD  T++ ++   S +G++ EAE +  +M+E G  P+  
Sbjct: 756 EENMDRAFALVNKMENS-GLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRS 814

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
             TSLI  +       +  R  + + + G  PDD+F
Sbjct: 815 TYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDDKF 850



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/425 (23%), Positives = 184/425 (43%), Gaps = 26/425 (6%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCL 126
           +G  GS+P  +  +     +A KL+E                   C A     F VL+  
Sbjct: 281 YGNCGSNPLVFDLLVRTYVQARKLRE------------------GCEA-----FRVLKSK 317

Query: 127 GDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD--LDKA 184
           G       C  +L  +       LA   +   +++  +V +Y + + +   C++  ++  
Sbjct: 318 GLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENT 377

Query: 185 ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244
           +    DM ++GV PD VT++TLI+      L  +A E  + M   G  P   TY+++I+ 
Sbjct: 378 KSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIING 437

Query: 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
             + G    A G+ D         D   ++ L+       N      +++EM + GV P+
Sbjct: 438 LCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPD 497

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           +++++ L+  + +     Q    +++M + GL+P+   Y  L+  + R     + L V  
Sbjct: 498 LVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRD 557

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           EM E+G  L V  YNT+L          EA E+F +M +     PD +TF+++I      
Sbjct: 558 EMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEM-TERGVFPDFYTFTTLINGYXKD 616

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
           G +++A  +F  M++   +P++    +LI  + K    + V    N +    I P+    
Sbjct: 617 GNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISY 676

Query: 485 GCLLN 489
           G L+N
Sbjct: 677 GILIN 681



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 110/506 (21%), Positives = 197/506 (38%), Gaps = 72/506 (14%)

Query: 177 KCRD-LDKAERLFDDMLDR--GVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCD 232
           KCR+ L   +R  D +       K    +FS +I    R   LP+        +   G  
Sbjct: 210 KCRENLQLGQRFIDSITSNCPNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVS 269

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGL----YDRARN-----EKWRI--------DPNAFST 275
              +   S++  YG  G+  + F L    Y +AR      E +R+          NA ++
Sbjct: 270 RVEIV-ESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNS 328

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           L+      G  D    +Y+E+   GV+ N+ T N +++ + + ++    K+   +M + G
Sbjct: 329 LLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKG 388

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           + P+  TY +L+ AY R    E+   +   M  KG++  V  YN ++      G    A 
Sbjct: 389 VFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAK 448

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            + ++M       PD+ T++ ++  C     + +AE +F+EM   G  P+L   ++LI  
Sbjct: 449 GVLDEMLKI-GMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGL 507

Query: 456 YGKAQRTDDVVRALNRLPELGITPDD--------RFC------------------GCLLN 489
             K    D  ++    +   G+ PD+         FC                  GC L+
Sbjct: 508 LSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLD 567

Query: 490 VMTQTP------KEELGK-----LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 538
           V+T         KE++         E  E+      Y    L+     +G+  K  T   
Sbjct: 568 VVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFE 627

Query: 539 NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRS--PTQWSLHL-- 594
             I +++K        D+     L++  CK  E+    E++ D+ SR   P   S  +  
Sbjct: 628 MMIQRNLKP-------DVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILI 680

Query: 595 -KSLSLGAALTALHIWINDLSKALES 619
               ++G    A  +W   + K  E+
Sbjct: 681 NGYCNMGCVSEAFRLWDEMVEKGFEA 706


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 194/434 (44%), Gaps = 28/434 (6%)

Query: 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD---LDKAERLFDDMLDRGVKPDNV 201
           P++ AL      + L + ++ + YN  +     CR    LD A  L   M     +P  V
Sbjct: 63  PESPAL-----LSSLPSVRDAVSYNTVLAAL--CRQGGCLDAALFLLRVMAHE-TRPTAV 114

Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
           +++TL+          +AV     M + G  PD +TY ++I     A +V+ A  L  R 
Sbjct: 115 SYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELL-RE 173

Query: 262 RNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
             E   I+PN   +S L++ Y  AG ++    V+EEM   G++P+++ Y  L+D++ R  
Sbjct: 174 MCESG-IEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREG 232

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
           +  +   +  +M + GL PN  TY  L+ +  +    ++ +S+   M EKG+ L    YN
Sbjct: 233 KVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYN 292

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           TL+   + V   DEA  + E+M   E   +P+  TF+S+I      G++ +A  + + M 
Sbjct: 293 TLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMA 352

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN---VMTQTP 495
           E G   NL     LI    +  +    +  ++ +   G+ PD      L+N    M Q  
Sbjct: 353 ENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVD 412

Query: 496 KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID 555
           + E   L+  + +   +   V  + L     E    ++A   F+ + K       NC +D
Sbjct: 413 RAE--SLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHK-------NCKLD 463

Query: 556 LCVNLNLLENACKL 569
           +     ++  AC+L
Sbjct: 464 VVAYSTMIHGACRL 477



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 158/347 (45%), Gaps = 45/347 (12%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           CR+  + KA ++ D M++RG++P+ VT++ LI+         +A+     M   G   DA
Sbjct: 229 CREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDA 288

Query: 236 LTYSSMIDAYGRAGNVEM--AFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLN 291
           +TY+++I   G +G +EM  A GL +   + +  ++PN   F+++I      G       
Sbjct: 289 VTYNTLIT--GLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQ 346

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           V + M   G   N++T+N L+  + R  +  +   +  EM  +GL P+  TY+ L+  + 
Sbjct: 347 VRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFC 406

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ--- 408
           +    +   S+  +M+  G++  +  Y  LLA   + G  ++A   F++M   +NC+   
Sbjct: 407 KMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMH--KNCKLDV 464

Query: 409 --------------------------------PDSWTFSSMITICSCRGKVSEAEAMFNE 436
                                           PDS T+S +I + +  G +  AE +  +
Sbjct: 465 VAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQ 524

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
           M  +GF P++ V  SLI+ YG    T+ V+  +  +    I  D + 
Sbjct: 525 MTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMTAKDIALDSKI 571



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 102/217 (47%), Gaps = 1/217 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ +N+ +    +   + KA  L D+M   G++PD+ T+S LI+        ++A     
Sbjct: 360 LVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLS 419

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M   G +P+ + Y  ++ A    G +E A   +D   ++  ++D  A+ST+I       
Sbjct: 420 KMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEM-HKNCKLDVVAYSTMIHGACRLR 478

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           +        + M   G+ P+ +TY+ L++    +      + + K+MT +G  P+   + 
Sbjct: 479 DRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFD 538

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
           SL++ YG     E  L + REM  K + L   + +T+
Sbjct: 539 SLIKGYGAKGDTEKVLELIREMTAKDIALDSKIISTI 575



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 51/113 (45%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y+  +    + RD   AE     MLD G+ PD+VT+S LI+    +     A    
Sbjct: 463 DVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVL 522

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           ++M + G  PD   + S+I  YG  G+ E    L      +   +D    ST+
Sbjct: 523 KQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMTAKDIALDSKIISTI 575


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 168/369 (45%), Gaps = 5/369 (1%)

Query: 133 QDCVIILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDD 190
             C  +L+ M N ++     T+++  L+     +V  YN+ +  F K   +  A+ +F++
Sbjct: 189 HGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNE 248

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           +  RG++P  V+F+TLI+    +   ++     + M      PD  TYS +I    + G 
Sbjct: 249 IRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGR 308

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
           +++A  L+D  +    R +   F+ LI     +   D  +N Y +M  +GVKP+++ YN 
Sbjct: 309 LDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNT 368

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           LL+ + +     + + +  EM   G+ P+  TY +L+  Y +    E  + + + M E+G
Sbjct: 369 LLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEG 428

Query: 371 MQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           + L    +  L++  C D G   +A     +M  +   +PD  T++ +I     +G V  
Sbjct: 429 VVLDNVAFTALISGFCRD-GRVRDAERTLREMVEA-GMKPDDATYTMVIDGYCKKGNVKM 486

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
              +  EM   G +P +     L+    K  +  +    L  +  LG+TPDD     LL 
Sbjct: 487 GFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLE 546

Query: 490 VMTQTPKEE 498
              +  K E
Sbjct: 547 GHCKNGKAE 555



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 135/296 (45%), Gaps = 4/296 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y+V +    K   LD AE+LFD+M  RG++P+ +TF+ LI     +   + A+  +
Sbjct: 292 DVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTY 351

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M + G  PD + Y+++++   + G+V  A  L D  R    + D   ++TLI  Y   
Sbjct: 352 HQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKE 411

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+ +  + + + M   GV  + + +  L+    R  R    +   +EM + G+ P+  TY
Sbjct: 412 GDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATY 471

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++  Y +    +    + +EM+  G +  V  YN L+      G    A  + E M +
Sbjct: 472 TMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLN 531

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
                PD  T++ ++      GK   AE +     E G   +    TSL+  Y K+
Sbjct: 532 L-GVTPDDITYNILLEGHCKNGK---AEDLLKLRNEKGLIVDYAYYTSLVSEYNKS 583


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 1/351 (0%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AAL L      L      + Y   +  F +  D D+A  LFD+ML+  + PD  TF+ L+
Sbjct: 243 AALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLV 302

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                     ++   F+++   G  P+  T++  I    + G+++ A  L      E  R
Sbjct: 303 HALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLR 362

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   ++T+I                 +M   G +PN  TYN+++D   +         I
Sbjct: 363 PDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRI 422

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
            K+    G  P+  TY SL+  + +    +  ++V+++   KG++ S+ +YNTL+     
Sbjct: 423 LKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQ 482

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G    A ++  +M + + C+PD WT++ +I      G +S+A  +  + +  G  P++F
Sbjct: 483 QGLILPALQLMNEM-AEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIF 541

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
              +L+  Y +  + D  +  +NR+   G+TPD      LLN + +T K E
Sbjct: 542 TYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSE 592



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 157/331 (47%), Gaps = 2/331 (0%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D D+A  +F D L +G++P  + ++TLI       L   A++    M   GC PD  TY+
Sbjct: 450 DPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYN 509

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +I+   + G +  A  L   A  +    D   ++TL+  Y      D  + +   M + 
Sbjct: 510 LIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQ 569

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G+ P++ITYN LL+ + +  +  +V  I+K MT+ G +PN  TY +++ +   ++   + 
Sbjct: 570 GMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEA 629

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           + +  EMK KG+   V  + TL+     VG  D A+ +F  M+   +    + T++ +I+
Sbjct: 630 VDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIIS 689

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             S +  +  A  +F+EM + G +P+ +    LI  + K    +   + L    E G  P
Sbjct: 690 AFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIP 749

Query: 480 DDRFCGCLLNVMTQTPK--EELGKLVECVEK 508
                G +LN +    K  E +G +   V+K
Sbjct: 750 SLTTFGRVLNCLCVEHKVQEAVGIIHLMVQK 780



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 121/264 (45%), Gaps = 1/264 (0%)

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +AV+ FERM  F CDP   +Y+++++     G    A  +Y R +++K   D   ++  I
Sbjct: 173 EAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRI 232

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           K +   G     L +   M  +G   N + Y  ++          + + ++ EM +  L 
Sbjct: 233 KSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLC 292

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P+  T+  L+ A  +  +  ++  ++ ++ ++G+  ++  +N  +      G  D A  +
Sbjct: 293 PDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRL 352

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
              + S E  +PD  T++++I     + +V EAE   ++M+  GFEPN F   S+I  Y 
Sbjct: 353 LGCV-SREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYC 411

Query: 458 KAQRTDDVVRALNRLPELGITPDD 481
           K     D  R L      G  PD+
Sbjct: 412 KKGMVVDANRILKDAVFKGFKPDE 435



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 2/246 (0%)

Query: 236 LTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
            TY SM+   G  G   EM   L +   N    +    +   ++ YG  G     ++ +E
Sbjct: 120 FTYKSMLQKLGFHGKFNEMENLLSEMRSNLDNTLLEGVYVEAMRFYGRKGKIQEAVDTFE 179

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
            M      P++ +YN +++ +       Q   +Y  M D  +  +  TY   ++++ R  
Sbjct: 180 RMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTG 239

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
                L + R M   G   +   Y T++    + G  D A E+F++M     C PD  TF
Sbjct: 240 RPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLC-PDVTTF 298

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + ++     +G V E+E +F+++L+ G  PNLF     IQ   K    D  VR L  +  
Sbjct: 299 NKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSR 358

Query: 475 LGITPD 480
            G+ PD
Sbjct: 359 EGLRPD 364



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 2/226 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++  YN  +  + +   LD A  L + M  +G+ PD +T++TL++         + +E F
Sbjct: 539 DIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIF 598

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   GC P+ +TY+++I++   +  V  A  L    +++    D  +F TLI  +   
Sbjct: 599 KAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKV 658

Query: 284 GNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           G+ DG   ++  M K   V     TYN ++              ++ EM  NG  P+  T
Sbjct: 659 GDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYT 718

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD 387
           Y  L+  + +            E  EKG   S+T +  +L  +C +
Sbjct: 719 YRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVE 764



 Score = 46.6 bits (109), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 44/219 (20%), Positives = 85/219 (38%), Gaps = 41/219 (18%)

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT---DNGLSPNWNTYASLLRAYGRARYG 356
           G K  + TY ++L  +G   +  +++ +  EM    DN L      Y   +R YGR    
Sbjct: 114 GFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSNLDNTLLEG--VYVEAMRFYGRKGKI 171

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT--- 413
           ++ +  +  M       SV  YN ++ +  + GY ++A +++  MK  +  + D +T   
Sbjct: 172 QEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKK-VESDVYTYTI 230

Query: 414 --------------------------FSSMITICSCR------GKVSEAEAMFNEMLEAG 441
                                     FS+ +  C+        G    A  +F+EMLE  
Sbjct: 231 RIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECC 290

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             P++     L+    K     +  R  +++ + G+ P+
Sbjct: 291 LCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPN 329


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 160/333 (48%), Gaps = 3/333 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERM 226
           Y + +      RD+ K E +F++M  + +  D   +S++I+   R  N+  +A E F+  
Sbjct: 140 YTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNV-RRASEVFDEC 198

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G +P+  TY ++I+ + + G +E A  L    +     I+   F+T+I  Y      
Sbjct: 199 VGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMV 258

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  L +   M+ +G++ ++ TYN L   + RA R  + K + + M + G+ PN  +Y +L
Sbjct: 259 DKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTL 318

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  +       +   ++REM   G + S+  YN ++      G   EA E F++    + 
Sbjct: 319 ISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREA-ERFKNEMEKKG 377

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             PD +++++++      GKV  A  +F EM + G +PNL   T+LI    K  R+++  
Sbjct: 378 LVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAF 437

Query: 467 RALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 499
           +  + +   G+TPDD     L+  +    K+ +
Sbjct: 438 QLYDNMLGDGLTPDDALYSALVGSLHTDKKQNV 470



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 137/297 (46%), Gaps = 1/297 (0%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
           A +L D+M   GVK + + +++L+         ++  E  + M + G +P   TY+ ++D
Sbjct: 86  ARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVD 145

Query: 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
               A ++     +++  +++    D   +S++I  Y  AGN      V++E    G++P
Sbjct: 146 GLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEP 205

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           N  TY  L++   +  +    + +  +M   G+  N   + +++  Y R    +  L + 
Sbjct: 206 NEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIK 265

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
             M++ G++L V  YNTL          DEA  +   M   +  +P+  +++++I+I   
Sbjct: 266 MIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIM-IEKGVRPNHVSYTTLISIHCN 324

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            G + EA  +F EM   G EP+L     ++  Y K     +  R  N + + G+ PD
Sbjct: 325 EGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPD 381



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 58/117 (49%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A   ++ YNV M  + K   + +AER  ++M  +G+ PD  +++ L+    +N   + A+
Sbjct: 343 AEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVAL 402

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
             FE M   G  P+ + Y+++I    + G  E AF LYD    +    D   +S L+
Sbjct: 403 RLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALV 459


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 159/354 (44%), Gaps = 42/354 (11%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI---------------- 207
           +++ Y+  +    K R +DKAE     M+++GV PDN T++ LI                
Sbjct: 255 DLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVF 314

Query: 208 -SCARMNNLPN------------------KAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
               R + LP+                  +A + F+ M   G +PD  +Y+ M++ Y   
Sbjct: 315 KEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATK 374

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           G +     L+D    +    D   F+ LIK Y   G  D  + ++ EM+  GVKP+++TY
Sbjct: 375 GCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTY 434

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYRE 365
             ++  + R  +       + +M D G+ P+   Y  L++ +   G     ++ +S   E
Sbjct: 435 MTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELIS---E 491

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           +   GM+L +  + +++     +G   +A  IF D+  +    PD+  ++ ++      G
Sbjct: 492 IMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIF-DLTVNVGLHPDAVVYNMLMDGYCLVG 550

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           K+ +A  +F+ M+ AG EPN+    +L+  Y K  R D+ +     + + GI P
Sbjct: 551 KMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 604



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 169/375 (45%), Gaps = 15/375 (4%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           + ++  +NV +K +  C  LDKA  +F++M D GVKP  VT+ T+I+        + A+E
Sbjct: 393 APDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAME 452

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F +M   G  PD   Y  +I  +   G++  A  L     N   R+D   F ++I    
Sbjct: 453 KFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLC 512

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G      N+++    +G+ P+ + YN L+D      +  +   ++  M   G+ PN  
Sbjct: 513 KLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV 572

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            Y +L+  Y +    ++ LS++REM +KG++ S  LYN ++    + G T  A   F +M
Sbjct: 573 GYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEM 632

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             S     +  T+S ++          EA  +F E+     + ++  L ++I    + +R
Sbjct: 633 TES-GIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRR 691

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVM-TQTPKEELGKLVECV---------EKSNS 511
            ++       +   G+ P    C    ++M T   KE L +  E +         E  + 
Sbjct: 692 VEEAKDLFASISRSGLVP----CAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSR 747

Query: 512 KLGYVVKLLLEEQDI 526
            L +VV+ LL++ +I
Sbjct: 748 LLNHVVRELLKKNEI 762



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 156/346 (45%), Gaps = 3/346 (0%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV--KPDNVTF 203
           D A   L + T +L    +V  YN+ +K         +A+ L   M + G    PD V +
Sbjct: 165 DEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAY 224

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
           +T+I         NKA + F+ M   G  PD +TYSS++ A  +A  ++ A     +  N
Sbjct: 225 NTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVN 284

Query: 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
           +    D   ++ LI  Y + G +   + V++EM+   + P+++  N L+ ++ +  +  +
Sbjct: 285 KGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKE 344

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
            + ++  M   G +P+  +Y  +L  Y       D   ++  M   G+   +  +N L+ 
Sbjct: 345 ARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIK 404

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
             A+ G  D+A  IF +M+     +P   T+ ++I      GK+ +A   FN+M++ G  
Sbjct: 405 AYANCGMLDKAMIIFNEMR-DHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVV 463

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           P+ +    LIQ +            ++ +   G+  D  F G ++N
Sbjct: 464 PDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIIN 509



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 160/356 (44%), Gaps = 2/356 (0%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LFD ML  G+ PD  TF+ LI       + +KA+  F  M   G  P  +TY ++I A  
Sbjct: 383 LFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALC 442

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           R G ++ A   +++  ++    D  A+  LI+ + T G+      +  E+   G++ +++
Sbjct: 443 RIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIV 502

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
            + ++++ + +  R    + I+    + GL P+   Y  L+  Y      E  L V+  M
Sbjct: 503 FFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAM 562

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
              G++ +V  Y TL+     +G  DE   +F +M   +  +P +  ++ +I      G+
Sbjct: 563 VSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREM-LQKGIKPSTILYNIIIDGLFEAGR 621

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
              A+  F+EM E+G   N    + +++   K +  D+ +     L  + +  D      
Sbjct: 622 TVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNT 681

Query: 487 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 541
           ++  M QT + EE   L   + +S      V   ++    ++    +EA ++F+S+
Sbjct: 682 MIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSM 737



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 138/344 (40%), Gaps = 46/344 (13%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL---- 236
           LD+ +R    +LDR +       +   S A   + P  AV  F R  S    P  L    
Sbjct: 54  LDELQRRGTPVLDRDLNGFLAALARAPSSAACGSGPALAVALFNRAASRAQGPRVLSPTS 113

Query: 237 -TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID-------------------------- 269
            TY+ ++D   RA   E+A   + +      R+D                          
Sbjct: 114 YTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLH 173

Query: 270 --------PNAFSTLIKL-----YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
                   P+ FS  I L      G +G  D  L +  E   +   P+++ YN ++D   
Sbjct: 174 RTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTV-CSPDVVAYNTVIDGFF 232

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +     +   ++KEM   G+ P+  TY+S++ A  +AR  +   +  R+M  KG+     
Sbjct: 233 KEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNW 292

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            YN L+   +  G   EA  +F++M+  ++  PD    ++++      GK+ EA  +F+ 
Sbjct: 293 TYNNLIYGYSSTGQWKEAVRVFKEMR-RQSILPDVVALNTLMGSLCKYGKIKEARDVFDT 351

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           M   G  P++F  T ++  Y       D+    + +   GI PD
Sbjct: 352 MAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 395


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 167/373 (44%), Gaps = 44/373 (11%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A  +FD ++ +G+KPD +               ++AV  F++M   G  P+ + Y ++I
Sbjct: 427 EARNIFDSVIRKGIKPDAMI--------------DEAVCIFDKMRQQGLSPNVVNYGALI 472

Query: 243 DAYGRAGNVEMAFGLYDRARNE--------KW---------------RIDPNAFSTLIKL 279
           DA  + G V+ A   +++  NE        KW               R+D   F+TL+  
Sbjct: 473 DALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCD 532

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
               G       + E M  +GV+P++I+YN L+D      R  +   +   M   GL PN
Sbjct: 533 LCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPN 592

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY +LL  Y +AR  +D  S+ REM   G    V  YNT+L      G   EA E++ 
Sbjct: 593 EFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYL 652

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +M +S   Q D +T++ ++        V EA  MF  +   G + ++     +I    K 
Sbjct: 653 NMINSRT-QWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKG 711

Query: 460 QRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPKEELGKLVECVEKS----NSK-L 513
            + +D +     +   G+ PD + +C    N++ +   EELG L   +E++    NS+ L
Sbjct: 712 GKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRML 771

Query: 514 GYVVKLLLEEQDI 526
             +V+  L   DI
Sbjct: 772 NALVRRFLHRGDI 784



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 156/361 (43%), Gaps = 38/361 (10%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           L    +V+ YN  +  F +   +DKA  LF  M+DRG+ PD VT++T+I       + ++
Sbjct: 298 LSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDR 357

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A   F++M   G  P   TY+ +I  Y   G  +    L +         D   ++ L+ 
Sbjct: 358 AKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLD 417

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
                G      N+++ +   G+KP+      ++D         +   I+ +M   GLSP
Sbjct: 418 YLCKNGRCTEARNIFDSVIRKGIKPDA-----MID---------EAVCIFDKMRQQGLSP 463

Query: 339 NWNTYASLLRA---YGRAR-------------YG-------EDTLSVYREMKEKGMQLSV 375
           N   Y +L+ A    GR               YG       E    +  EM ++G++L V
Sbjct: 464 NVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDV 523

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
            ++NTL+      G   EA  + E M      +PD  ++++++      G+  EA  + +
Sbjct: 524 VVFNTLMCDLCREGRVMEAQRLIELMLRV-GVRPDVISYNTLVDGHCLTGRTDEAAKLLD 582

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
            M+  G +PN F   +L+  Y KA+R DD    L  +   G TPD      +L+ + QT 
Sbjct: 583 VMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTG 642

Query: 496 K 496
           +
Sbjct: 643 R 643



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 149/320 (46%), Gaps = 25/320 (7%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS----CARMNNL 215
           K + +   Y++ +  F +   L+    +F  +L  G + +++ F+ L+       R++  
Sbjct: 190 KVAPDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEA 249

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL-YDRARNEKWRIDPN--A 272
            N  + W  RMP FGC P+ ++Y++++  +      E A  L +  A ++     P+  +
Sbjct: 250 TNILL-W--RMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVS 306

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           ++T+I  +   G  D   N++ +M   G+ P+++TYN ++D + +A+   + K ++++M 
Sbjct: 307 YNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQML 366

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
           D G+ P+  TY  L+  Y      ++ + +  EM    ++    +Y  LL      G   
Sbjct: 367 DKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCT 426

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           EA  IF D    +  +PD+               + EA  +F++M + G  PN+    +L
Sbjct: 427 EARNIF-DSVIRKGIKPDAM--------------IDEAVCIFDKMRQQGLSPNVVNYGAL 471

Query: 453 IQCYGKAQRTDDVVRALNRL 472
           I    K  R DD +   N++
Sbjct: 472 IDALCKLGRVDDAILKFNQM 491



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 112/251 (44%), Gaps = 5/251 (1%)

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA-RYGEDT 359
           V P+  TY+ L+    R  R      ++  +   G   N   +  LL+    A R  E T
Sbjct: 191 VAPDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEAT 250

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE--NCQPDSWTFSSM 417
             +   M E G   +V  YNTL+    +    +EA E+   M   +  +C PD  +++++
Sbjct: 251 NILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTV 310

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I      G+V +A  +F +M++ G  P++    ++I    KAQ  D       ++ + G+
Sbjct: 311 INGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGV 370

Query: 478 TPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536
            P +    CL++    T K +E+ +L+E +   + +    +  LL +   +     EA  
Sbjct: 371 KPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARN 430

Query: 537 LFNS-ISKDVK 546
           +F+S I K +K
Sbjct: 431 IFDSVIRKGIK 441



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 11/143 (7%)

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE------IFEDM 401
           RA   +    D L ++  +       SVT +N LL   +         E      +F+ M
Sbjct: 124 RAQSGSLASHDALKLFDLLLPHARPASVTAFNHLLTAVSRASGRHSTLESQLGISLFDRM 183

Query: 402 --KSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
             + S+   PD  T+S +I  C CR G++    A+F  +L+ G+  N  V   L++    
Sbjct: 184 VRECSDKVAPDRCTYSILIG-CFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCD 242

Query: 459 AQRTDDVVRALN-RLPELGITPD 480
           A+R D+    L  R+PE G TP+
Sbjct: 243 AKRLDEATNILLWRMPEFGCTPN 265


>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
 gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 143/315 (45%), Gaps = 1/315 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +  +      + A  L   M  R V+P+   FS +++  R      K  E    M 
Sbjct: 389 YGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMK 448

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           +    PD   Y+ MID +G+   ++ A   YDR  +E    D   ++TLI  +   G  D
Sbjct: 449 NSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHD 508

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++EEM+  G  P   TYN +++++G  ++  +VK +  +M   GL PN  TY +L+
Sbjct: 509 RAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLV 568

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YG +    D +     MK  G++ S T+YN L+   A  G +++A   +  M  S+  
Sbjct: 569 DIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVM-ISDGL 627

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P     +S+I       +  EA ++   M E   +P++   T+L++   +  + D V  
Sbjct: 628 RPSLLALNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKALIRVDKFDKVPA 687

Query: 468 ALNRLPELGITPDDR 482
               +   G TPD +
Sbjct: 688 VYEEMILSGCTPDGK 702



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 149/330 (45%), Gaps = 5/330 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           +L N  +  F K  D ++A      +   G+ P   TF  +IS    +    +A   FE 
Sbjct: 282 LLLNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEE 341

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P    +++++  Y R G+++ A  +           D + +  L+  Y   G 
Sbjct: 342 MKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGR 401

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT--IYKEMTDNGLSPNWNTY 343
           ++   ++ ++M+A  V+PN   ++ +L +  R +  WQ KT  + +EM ++ + P+ + Y
Sbjct: 402 WESARHLLKQMEARNVQPNTFIFSRILASY-RDRGEWQ-KTFEVLREMKNSNVKPDRHFY 459

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++  +G+    +  +  Y  M  +G++  V  +NTL+      GY D A E+FE+M+ 
Sbjct: 460 NVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQ- 518

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                P   T++ MI     + K  E + +  +M   G  PN+   T+L+  YG + R +
Sbjct: 519 ERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFN 578

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           D +  L  +   G+ P       L+N   Q
Sbjct: 579 DAIDCLEAMKSAGLKPSATMYNALINAFAQ 608



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 149/335 (44%), Gaps = 7/335 (2%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVE-WF 223
           + YN  +    +  DL+KA  L   M   G + D + +S +I S  R N +    ++  +
Sbjct: 210 LTYNALIGACARNNDLEKALNLMSRMRQDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLY 269

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E + S   + D L  + +I  + +AG+   A       +        + F  +I   G  
Sbjct: 270 EEIESDKIELDGLLLNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNH 329

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +    ++EEMK  G+KP +  +N LL    R     + ++I  EM  +GLSP+ +TY
Sbjct: 330 GRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTY 389

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             L+ AY      E    + ++M+ + +Q +  +++ +LA   D G   + FE+  +MK+
Sbjct: 390 GLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKN 449

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S N +PD   ++ MI        +  A   ++ ML  G EP++    +LI C+ K    D
Sbjct: 450 S-NVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHD 508

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
                   + E G  P    C    N+M  +  E+
Sbjct: 509 RAAELFEEMQERGYLP----CPTTYNIMINSLGEQ 539



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 151/329 (45%), Gaps = 1/329 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N  +K + +   L +AE +  +M   G+ PD  T+  L+           A    ++M 
Sbjct: 354 FNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQME 413

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           +    P+   +S ++ +Y   G  +  F +    +N   + D + ++ +I  +G     D
Sbjct: 414 ARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLD 473

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             +  Y+ M + G++P+++T+N L+D   +     +   +++EM + G  P   TY  ++
Sbjct: 474 HAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMI 533

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            + G     ++   +  +M+ +G+  +V  Y TL+ +    G  ++A +  E MKS+   
Sbjct: 534 NSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSA-GL 592

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P +  ++++I   + RG   +A   +  M+  G  P+L  L SLI  +G+ +R  +   
Sbjct: 593 KPSATMYNALINAFAQRGLSEQAVNAYRVMISDGLRPSLLALNSLINAFGEDRRDIEAFS 652

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK 496
            L  + E  + PD      L+  + +  K
Sbjct: 653 ILQYMKENDVKPDVVTYTTLMKALIRVDK 681



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 3/195 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ +    +    D+ + L   M  +G+ P+ VT++TL+     +   N A++  E M 
Sbjct: 529 YNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMK 588

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S G  P A  Y+++I+A+ + G  E A   Y    ++  R    A ++LI  +G      
Sbjct: 589 SAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMISDGLRPSLLALNSLINAFGEDRRDI 648

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              ++ + MK   VKP+++TY  L+  + R  +  +V  +Y+EM  +G +P+    A L 
Sbjct: 649 EAFSILQYMKENDVKPDVVTYTTLMKALIRVDKFDKVPAVYEEMILSGCTPDGKARAMLR 708

Query: 348 RAYGRARYGEDTLSV 362
            A    RY + TLS+
Sbjct: 709 SAL---RYMKRTLSL 720



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 59/140 (42%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y   + ++      + A    + M   G+KP    ++ LI+      L  +AV  + 
Sbjct: 561 VVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYR 620

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M S G  P  L  +S+I+A+G       AF +    +    + D   ++TL+K      
Sbjct: 621 VMISDGLRPSLLALNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKALIRVD 680

Query: 285 NFDGCLNVYEEMKAIGVKPN 304
            FD    VYEEM   G  P+
Sbjct: 681 KFDKVPAVYEEMILSGCTPD 700


>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
          Length = 378

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 142/316 (44%), Gaps = 3/316 (0%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           +   ++F +M  RG +PD    +T + C        K    FE +  +G  PD  +YS +
Sbjct: 6   EDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSIL 65

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I    +AG       ++   +   + +D  A++ ++  +  +G  D      EEMK   V
Sbjct: 66  IHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHV 125

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            P + TY +++D + +  R  +   +++E    G+  N   Y+SL+  +G+    ++   
Sbjct: 126 PPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYL 185

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-I 420
           +  EM +KG+  +V  +N+L+         +EA   F+ MK  + C P+++T+S +I  +
Sbjct: 186 ILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMK-CSPNTYTYSILINGL 244

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           C  + K ++A   + EM + G  PN+   T++I    K     D      R    G  PD
Sbjct: 245 CRVQ-KYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANGGIPD 303

Query: 481 DRFCGCLLNVMTQTPK 496
                 L+  M+   +
Sbjct: 304 AASFNALIEGMSHANR 319



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 140/293 (47%), Gaps = 1/293 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y++ +    K     +   +F  M  RG   D   ++ ++     +   +KA E  E M 
Sbjct: 62  YSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMK 121

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                P   TY S+ID   +   ++ A+ L++ A+++   ++   +S+LI  +G  G  D
Sbjct: 122 VKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRID 181

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + EEM   G+ PN+ T+N+L+D + +A+   +    ++ M +   SPN  TY+ L+
Sbjct: 182 EAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILI 241

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               R +        ++EM+++G+  +V  Y T+++  A VG   +A  +FE  K++   
Sbjct: 242 NGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANGGI 301

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
            PD+ +F+++I   S   +  EA  +F E    G   N+    SL+    KA+
Sbjct: 302 -PDAASFNALIEGMSHANRAIEAYHVFEETRLRGCRINVKACISLLDALNKAE 353



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 94/204 (46%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI+Y+  +  F K   +D+A  + ++M+ +G+ P+  T+++L+         N+A+  F+
Sbjct: 164 VIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQ 223

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M    C P+  TYS +I+   R      AF  +   + +    +   ++T+I      G
Sbjct: 224 SMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVG 283

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N     +++E  KA G  P+  ++N L++ M  A R  +   +++E    G   N     
Sbjct: 284 NITDACSLFERFKANGGIPDAASFNALIEGMSHANRAIEAYHVFEETRLRGCRINVKACI 343

Query: 345 SLLRAYGRARYGEDTLSVYREMKE 368
           SLL A  +A   E    V   ++E
Sbjct: 344 SLLDALNKAECIEQAAVVGAVLRE 367


>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Brachypodium distachyon]
          Length = 496

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 154/336 (45%), Gaps = 14/336 (4%)

Query: 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF 203
            PD A           + ++++ L+N  +    K R   KA  L    L+R   PD VT+
Sbjct: 149 RPDIAVRLFLSLHRSHRVAQDLPLFNSLLDALGKSRHASKAASLVR-ALERRFPPDVVTY 207

Query: 204 STLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR-- 260
           +TL     R+ +  ++A++   +M   G  P   TY+ ++  + RAG ++ A+  + +  
Sbjct: 208 NTLADGWCRVKDT-SRALDLLRQMAESGIAPTKTTYNVILKGFFRAGQLQHAWNFFLQMK 266

Query: 261 ---ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
              +++E  + D  +++T+I   G AG  D    +++EM   G  P + TYN L+  + +
Sbjct: 267 KRGSKDENCKPDVVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIATYNALIQVICK 326

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
                   T++ +M      PN  TY  L+R        +  + +   MK +G +  V  
Sbjct: 327 KGNVEDAVTVFDDMIRKDYIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQT 386

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE---AEAMF 434
           YN L+    + G  D+A  +FE M   E C P+  T++ +I+    R +  +   A  M 
Sbjct: 387 YNVLIRYSFEEGEMDKALHLFERMSKGEECLPNQDTYNIVISAMFVRKRAEDMAIAARMV 446

Query: 435 NEMLEAGFEPNLFVLTSL---IQCYGKAQRTDDVVR 467
            EM+E G+ P  F+L  +   +   G  Q + D++R
Sbjct: 447 MEMVERGYLPRRFMLNRVLNGLMLTGNQQLSRDLLR 482



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 94/182 (51%), Gaps = 6/182 (3%)

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P+++TYN L D   R K   +   + ++M ++G++P   TY  +L+ + RA   +   + 
Sbjct: 202 PDVVTYNTLADGWCRVKDTSRALDLLRQMAESGIAPTKTTYNVILKGFFRAGQLQHAWNF 261

Query: 363 YREMKEKGMQ-----LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           + +MK++G +       V  Y T++      G  D+A ++F++M S E C P   T++++
Sbjct: 262 FLQMKKRGSKDENCKPDVVSYTTIIHGLGVAGQLDKARKLFDEM-SKEGCPPTIATYNAL 320

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I +   +G V +A  +F++M+   + PN+   T LI+      + D  ++ + R+   G 
Sbjct: 321 IQVICKKGNVEDAVTVFDDMIRKDYIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGC 380

Query: 478 TP 479
            P
Sbjct: 381 EP 382


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 165/338 (48%), Gaps = 8/338 (2%)

Query: 131 LEQDC---VIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD--LDKAE 185
           +EQD     I++N   +       L+  +  LK   E  +   T  +   C +  +D+  
Sbjct: 93  IEQDIHSLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVM 152

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
            L+DDML RG++P+  T++ +I+    +   N+A+ + ++M   GC P+ + YS++ID Y
Sbjct: 153 MLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGY 212

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
              G ++ A  ++D   ++    +   +++L+  Y      +  + + +E    G+ P++
Sbjct: 213 CLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDI 272

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           +T+  ++  + RA RP   + +++ +  +G +PN  TY  LL    +    E+  ++++E
Sbjct: 273 VTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQE 332

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M+   ++ ++ +Y  L+      G   +  E+F  +   E  +P+ +T+++++      G
Sbjct: 333 MQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRL-IDEGLKPNVYTYTALVGALCKEG 391

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            + EA  +F +M E G  P+      +IQ  G  Q  D
Sbjct: 392 LIIEAHKLFRKMEEDGCTPDKCAYNVIIQ--GFLQHKD 427



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 158/328 (48%), Gaps = 11/328 (3%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           ++ +  F     +D    +   +L  G++P  VTF+TL++   M    ++ +  ++ M  
Sbjct: 101 SILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLV 160

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
            G  P+  TY+ +I++  ++G    A G   +   EK    PN   +STLI  Y   G  
Sbjct: 161 RGLQPNVYTYNVIINSLSKSGKANEALGFLKQM--EKVGCVPNVVNYSTLIDGYCLRGQM 218

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D   +V++ M + G  PN+ TY +L++   + +R  +   +  E    GL P+  T+ ++
Sbjct: 219 DEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTI 278

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +    RA        ++R +   G   ++  Y  LL      G  +EAF +F++M+ S  
Sbjct: 279 ISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRS-T 337

Query: 407 CQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
            +P+   ++ +I ++C C GK+ + + +F+ +++ G +PN++  T+L+    K     + 
Sbjct: 338 VKPNLVIYTILIDSLCKC-GKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEA 396

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQ 493
            +   ++ E G TPD     C  NV+ Q
Sbjct: 397 HKLFRKMEEDGCTPDK----CAYNVIIQ 420



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 131/286 (45%), Gaps = 1/286 (0%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G++ D  + S LI+C    +  +  +    ++   G +P  +T++++++     G ++  
Sbjct: 92  GIEQDIHSLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQV 151

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             LYD       + +   ++ +I     +G  +  L   ++M+ +G  PN++ Y+ L+D 
Sbjct: 152 MMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDG 211

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
                +  + ++++  M   G +PN  TY SL+  Y +    E+ + +  E   KG+   
Sbjct: 212 YCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPD 271

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           +  + T+++     G    A ++F  +  +    P+  T+  ++      G + EA A+F
Sbjct: 272 IVTFTTIISGLCRAGRPLAAQQLFRYI-CAHGHTPNIMTYGVLLDGLCKHGNLEEAFALF 330

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            EM  +  +PNL + T LI    K  +  D     +RL + G+ P+
Sbjct: 331 QEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPN 376



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 109/208 (52%), Gaps = 5/208 (2%)

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           FS+++++    G+++  + + +E++ +G++ ++ + + L++      R     ++  ++ 
Sbjct: 69  FSSIVRM----GHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSVLSKIL 124

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             GL P+  T+ +LL         +  + +Y +M  +G+Q +V  YN ++   +  G  +
Sbjct: 125 KLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKAN 184

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           EA    + M+    C P+   +S++I     RG++ EA ++F+ M+  G  PN++  TSL
Sbjct: 185 EALGFLKQMEKV-GCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSL 243

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  Y K +R ++ V+ L+     G+ PD
Sbjct: 244 MNGYCKIERIEEAVQLLDETLRKGLVPD 271



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 54/121 (44%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A AL     +      +++Y + +    KC  +   + LF  ++D G+KP+  T++ L+ 
Sbjct: 326 AFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVG 385

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 L  +A + F +M   GC PD   Y+ +I  + +  +  MA  L +   N  +  
Sbjct: 386 ALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSA 445

Query: 269 D 269
           D
Sbjct: 446 D 446


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 168/349 (48%), Gaps = 9/349 (2%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           +++N +       LA     NK++  K    V++YN  +    K + +D A  LF +M  
Sbjct: 21  VVVNGLCKRGDTDLAFNLL-NKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 79

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           +G++P+ VT+S+LISC       + A      M     +PD  T+S++IDA+ + G +  
Sbjct: 80  KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 139

Query: 254 AFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           A  LYD     K  IDP+   +S+LI  +      D    ++E M +    P+++TYN L
Sbjct: 140 AEKLYDEMV--KRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 197

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           +    + KR  +   +++EM+  GL  N  TY  L++   +A   +    +++EM   G+
Sbjct: 198 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 257

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
             ++  YNTLL      G  ++A  +FE ++ S+  +P  +T++ MI      GKV +  
Sbjct: 258 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK-MEPTIYTYNIMIEGMCKAGKVEDGW 316

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +F  +   G +P++    ++I  + +    ++       + E G  P+
Sbjct: 317 DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 365



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 145/283 (51%), Gaps = 1/283 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K + +V  ++  +  F K   L +AE+L+D+M+ R + P  VT+S+LI+   M++  ++A
Sbjct: 116 KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEA 175

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
            + FE M S  C PD +TY+++I  + +   VE    ++          +   ++ LI+ 
Sbjct: 176 KQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQG 235

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
              AG+ D    +++EM + GV PN++TYN LLD + +  +  +   +++ +  + + P 
Sbjct: 236 LFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 295

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY  ++    +A   ED   ++  +  KG++  V  YNT+++     G  +EA  +F+
Sbjct: 296 IYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFK 355

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
           +MK  +   P+S  ++++I      G    +  +  EM   GF
Sbjct: 356 EMK-EDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGF 397



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 147/317 (46%), Gaps = 1/317 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ Y V +    K  D D A  L + M    ++P  + ++T+I         + A+  F
Sbjct: 15  DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLF 74

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M + G  P+ +TYSS+I      G    A  L       K   D   FS LI  +   
Sbjct: 75  KEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKE 134

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       +Y+EM    + P+++TY++L++      R  + K +++ M      P+  TY
Sbjct: 135 GKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTY 194

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L++ + + +  E+ + V+REM ++G+  +   YN L+      G  D A EIF++M  
Sbjct: 195 NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM-V 253

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S+   P+  T+++++      GK+ +A  +F  +  +  EP ++    +I+   KA + +
Sbjct: 254 SDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 313

Query: 464 DVVRALNRLPELGITPD 480
           D       L   G+ PD
Sbjct: 314 DGWDLFCNLSLKGVKPD 330



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 142/283 (50%), Gaps = 5/283 (1%)

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLY 280
            +RM + GC PD +TY  +++   + G+ ++AF L ++   E+ +++P    ++T+I   
Sbjct: 4   IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM--EQGKLEPGVLIYNTIIDGL 61

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
               + D  LN+++EM+  G++PN++TY++L+  +    R      +  +M +  ++P+ 
Sbjct: 62  CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 121

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            T+++L+ A+ +     +   +Y EM ++ +  S+  Y++L+         DEA ++FE 
Sbjct: 122 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 181

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M  S++C PD  T++++I       +V E   +F EM + G   N      LIQ   +A 
Sbjct: 182 M-VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 240

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 503
             D        +   G+ P+      LL+ + +  K E   +V
Sbjct: 241 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVV 283



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 114/232 (49%), Gaps = 1/232 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +K F K + +++   +F +M  RG+  + VT++ LI         + A E F
Sbjct: 190 DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIF 249

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M S G  P+ +TY++++D   + G +E A  +++  +  K       ++ +I+    A
Sbjct: 250 KEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 309

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +   +++  +   GVKP+++ YN ++    R     +   ++KEM ++G  PN   Y
Sbjct: 310 GKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCY 369

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
            +L+RA  R    E +  + +EM+  G     +    +  M  D G  D++F
Sbjct: 370 NTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD-GRLDKSF 420



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 55/115 (47%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ +  +  + K    +  YN+ ++   K   ++    LF ++  +GVKPD V ++T+IS
Sbjct: 280 AMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMIS 339

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
                    +A   F+ M   G  P++  Y+++I A  R G+ E +  L    R+
Sbjct: 340 GFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRS 394


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 149/312 (47%), Gaps = 4/312 (1%)

Query: 151 ALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI- 207
           A   + N LK     +V+L N  + +  +   L +A  LF++M      P+ VT++T+I 
Sbjct: 320 AYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIK 379

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           S       P++A  W ERM   G  P + TYS +ID + +   VE A  L +    + + 
Sbjct: 380 SLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFP 439

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
             P A+ +LI   G A  ++    +++E+K      ++  Y  ++   G+  R  +   +
Sbjct: 440 PCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGL 499

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           + EM   G  P+   Y +L+    RA   ++  S++R M+E G    +  +N +L   A 
Sbjct: 500 FNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLAR 559

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G    A E+F  MKSS   +PD+ ++++++   S  G   EA  +  EM   GFE +L 
Sbjct: 560 TGGPKRAMEMFAKMKSS-TIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYDLI 618

Query: 448 VLTSLIQCYGKA 459
             +S+++  GK 
Sbjct: 619 TYSSILEAVGKV 630



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 180/435 (41%), Gaps = 63/435 (14%)

Query: 120 FSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVF---- 175
            +++RCL ++ L  +    + +M      A+  +  +  +K    V + N  + +F    
Sbjct: 129 MALIRCLDENRLVGELWRTIQDMVK-SPCAIGPSELSEIVKILGRVKMVNKALSIFYQVK 187

Query: 176 -RKCRDL-----------------DKAERLFDDMLDRG-VKPDNVTFSTLISCARMNNLP 216
            RKCR                   +K   L+++M   G   PD VT+S LIS     N  
Sbjct: 188 GRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRD 247

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           + AV  F+ M   G  P A  Y++++  Y + G VE A  L    R  +       ++ L
Sbjct: 248 DSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTEL 307

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE------ 330
           I+  G +G  +    VY+ M   G KP+++  NNL++ +GR+ R  +   +++E      
Sbjct: 308 IRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNC 367

Query: 331 ------------------------------MTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
                                         M  +G+ P+  TY+ L+  + +    E  L
Sbjct: 368 TPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKAL 427

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW-TFSSMIT 419
            +  EM EKG       Y +L+         + A E+F+++K  ENC   S   ++ MI 
Sbjct: 428 LLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELK--ENCGSSSVRVYAVMIK 485

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                G+ +EA  +FNEM + G  P+++   +LI    +A   D+       + E G  P
Sbjct: 486 HFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNP 545

Query: 480 DDRFCGCLLNVMTQT 494
           D      +LN + +T
Sbjct: 546 DINSHNIILNGLART 560



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 152/328 (46%), Gaps = 12/328 (3%)

Query: 113 SATEDDVFSVLRCLGDDFLEQDCVIILNNMTN----PDTAALALTYFTNK--LKASKEVI 166
           S   +D + V + +  D  + D V+++NN+ N     D    A+  F     L  +  V+
Sbjct: 314 SGRVEDAYGVYKNMLKDGCKPD-VVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVV 372

Query: 167 LYNVTMK-VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
            YN  +K +F       +A    + M   GV P + T+S LI      N   KA+   E 
Sbjct: 373 TYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEE 432

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P    Y S+I++ G+A   E A  L+   +          ++ +IK +G  G 
Sbjct: 433 MDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKHFGKCGR 492

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F+  + ++ EMK +G  P++  YN L+  M RA    +  ++++ M +NG +P+ N++  
Sbjct: 493 FNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNI 552

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +L    R    +  + ++ +MK   ++     YNT+L   +  G  +EA ++ ++M +S+
Sbjct: 553 ILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEM-NSK 611

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAM 433
             + D  T+SS   I    GKV E   M
Sbjct: 612 GFEYDLITYSS---ILEAVGKVDEDRNM 636



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 168/394 (42%), Gaps = 13/394 (3%)

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
           R   DM+           S ++       + NKA+  F ++    C P A TY+S+I   
Sbjct: 146 RTIQDMVKSPCAIGPSELSEIVKILGRVKMVNKALSIFYQVKGRKCRPTAGTYNSVILML 205

Query: 246 GRAGNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
            + G+ E    LY+   +E     D   +S LI  +G     D  + +++EMK  G++P 
Sbjct: 206 MQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPT 265

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
              Y  L+    +  +  +   +  EM      P   TY  L+R  G++   ED   VY+
Sbjct: 266 AKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYK 325

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSC 423
            M + G +  V L N L+ +        EA E+FE+M+   NC P+  T++++I ++   
Sbjct: 326 NMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLL-NCTPNVVTYNTIIKSLFED 384

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
           +   SEA +    M + G  P+ F  + LI  + K  R +  +  L  + E G  P    
Sbjct: 385 KAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAA 444

Query: 484 CGCLLNVMTQTPKEELGK--LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 541
              L+N + +  + E       E  E   S    V  ++++     G F  EA  LFN +
Sbjct: 445 YCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKHFGKCGRF-NEAMGLFNEM 503

Query: 542 SK-----DVKKAYCNCLIDLCVNLNLLENACKLL 570
            K     DV  AY N LI   V  ++++ A  L 
Sbjct: 504 KKLGCIPDV-YAY-NALITGMVRADMMDEAFSLF 535


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 182/375 (48%), Gaps = 2/375 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +   ++ + K R+ D A+++  +M +RG   + VT++ LI+    +    +A  + + M 
Sbjct: 225 HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 284

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
            +G  PD  TY ++I+   ++     A  L D     + + +   ++ LI  +   GN D
Sbjct: 285 DYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD 344

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + +EM A GV+PN ITY+NL+  + +  +  +   + K+M  +   P+  TY  ++
Sbjct: 345 EAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLII 404

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             + R    +D   +  EM+  G+  +V  Y+ ++      G  ++A ++ E+M +++  
Sbjct: 405 EGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEM-TTKGL 463

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+++ ++ +I+     G VS A  +F++M +    P+L+   SLI    K  R ++  +
Sbjct: 464 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 523

Query: 468 ALNRLPELGITPDD-RFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI 526
              ++ E G+ P++  + G +   +     E   +LV+ +  +  K   V+ + L E   
Sbjct: 524 YFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYF 583

Query: 527 EGDFKKEATELFNSI 541
           + D  ++ +  F S+
Sbjct: 584 KSDDIEKVSSTFKSM 598



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 162/345 (46%), Gaps = 2/345 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +    K R  ++A+ L D+M    +KP+ V ++ LI         ++A +  + M 
Sbjct: 295 YGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMV 354

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  P+ +TY +++    + G ++ A  L  +   +  R D   ++ +I+ +    +  
Sbjct: 355 AAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKK 414

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +  EM+  G+ PN+ TY+ ++  + ++  P +   + +EMT  GL PN   YA L+
Sbjct: 415 DAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLI 474

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             Y R         ++ +M +  +   +  YN+L+   + VG  +E+ + F  M+     
Sbjct: 475 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQ-ERGL 533

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+ +T+S +I      G +  AE +   ML+ G +PN  +   L++ Y K+   + V  
Sbjct: 534 LPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSS 593

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECVEKSNS 511
               + + G+  D+R  G L++ ++ +   E   +++  +EK+ S
Sbjct: 594 TFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGS 638



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 156/377 (41%), Gaps = 37/377 (9%)

Query: 139 LNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKP 198
           L  M   D A+L L           + I YN+ ++   +      A RL  +M + G+ P
Sbjct: 372 LCKMGQMDRASLLLKQMVRD-SHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISP 430

Query: 199 DNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
           +  T+S +I     +  P KA +  E M + G  P+A  Y+ +I  Y R GNV +A  ++
Sbjct: 431 NVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIF 490

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
           D+        D   +++LI      G  +     + +M+  G+ PN  TY+ L+    + 
Sbjct: 491 DKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKN 550

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
                 + + + M D GL PN   Y  LL +Y ++   E   S ++ M ++G+ L   +Y
Sbjct: 551 GDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIY 610

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICS--------------- 422
             L+   +  G  + AF +   ++ + +  PD   +SS+I+ +C                
Sbjct: 611 GILIHNLSSSGNMEAAFRVLSGIEKNGSV-PDVHVYSSLISGLCKTADREKAFGILDEMS 669

Query: 423 ------------------CR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                             C+ G +S A  +FN +L  G  PN    TSLI    K     
Sbjct: 670 KKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDIS 729

Query: 464 DVVRALNRLPELGITPD 480
           +     N +   GITPD
Sbjct: 730 NAFYLYNEMLATGITPD 746



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 145/316 (45%), Gaps = 1/316 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YNV +    +   +++A     DM D G+ PD  T+  LI+    +   N+A    + 
Sbjct: 258 VTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDE 317

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M      P+ + Y+++ID + R GN + AF +         + +   +  L++     G 
Sbjct: 318 MSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 377

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D    + ++M     +P+ ITYN +++   R         +  EM + G+SPN  TY+ 
Sbjct: 378 MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSI 437

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++    ++   E    +  EM  KG++ +  +Y  L++     G    A EIF+ M +  
Sbjct: 438 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKM-TKV 496

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           N  PD + ++S+I   S  G+V E+   F +M E G  PN F  + LI  Y K    +  
Sbjct: 497 NVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESA 556

Query: 466 VRALNRLPELGITPDD 481
            + + R+ + G+ P+D
Sbjct: 557 EQLVQRMLDTGLKPND 572



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 2/298 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  + K  DL+ AE+L   MLD G+KP++V +  L+     ++   K    F+ M 
Sbjct: 540 YSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSML 599

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G   D   Y  +I     +GN+E AF +           D + +S+LI       + +
Sbjct: 600 DQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADRE 659

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + +EM   GV PN++ YN L+D + ++      + ++  +   GL PN  TY SL+
Sbjct: 660 KAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLI 719

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +     +   +Y EM   G+     +Y+ L   C+  G  ++A  + E+M    + 
Sbjct: 720 DGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA 779

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              S  F++++     RGK+ E   + + ++  G  PN   + ++I    +A +  +V
Sbjct: 780 SISS--FNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEV 835



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/323 (20%), Positives = 147/323 (45%), Gaps = 2/323 (0%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K+    ++  YN  +    K   ++++ + F  M +RG+ P+  T+S LI     N    
Sbjct: 495 KVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLE 554

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
            A +  +RM   G  P+ + Y  ++++Y ++ ++E     +    ++   +D   +  LI
Sbjct: 555 SAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILI 614

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
               ++GN +    V   ++  G  P++  Y++L+  + +     +   I  EM+  G+ 
Sbjct: 615 HNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVD 674

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           PN   Y +L+    ++       +V+  +  KG+  +   Y +L+     VG    AF +
Sbjct: 675 PNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYL 734

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           + +M ++    PD++ +S + T CS  G + +A  +  EM   G   ++    +L+  + 
Sbjct: 735 YNEMLAT-GITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFC 792

Query: 458 KAQRTDDVVRALNRLPELGITPD 480
           K  +  + ++ L+ +   G+ P+
Sbjct: 793 KRGKMQETLKLLHVIMGRGLVPN 815



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 131/305 (42%), Gaps = 34/305 (11%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI--SCARMNNLPNKAVEW 222
           ++ YN  +    K  D+  A  +F+ +L +G+ P+ VT+++LI  SC ++ ++ N A   
Sbjct: 677 IVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSC-KVGDISN-AFYL 734

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           +  M + G  PDA  YS +      AG++E A  L +     +     ++F+ L+  +  
Sbjct: 735 YNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMF-LRGHASISSFNNLVDGFCK 793

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G     L +   +   G+ PN +T  N++  +  A +  +V TI+ E+           
Sbjct: 794 RGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARH 853

Query: 343 YASLLRAYGRARYGEDTLSVYREM-----KEKGMQLSVTLYNTLLAMCADVGYT------ 391
           ++SL         G+  L V  +M     KE  +  ++ L + ++A  A +G +      
Sbjct: 854 FSSLF--MDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIV 911

Query: 392 ---------DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
                     EA  + ++M    N QP   T  +++ I   R        + N+++   F
Sbjct: 912 DNLCRKGKLSEALNLLKEMDKRGNLQP---TLVALLGIFWFR----RHHHILNKVVFTVF 964

Query: 443 EPNLF 447
            P+L 
Sbjct: 965 APSLM 969


>gi|399216092|emb|CCF72780.1| unnamed protein product [Babesia microti strain RI]
          Length = 1520

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 122/240 (50%), Gaps = 3/240 (1%)

Query: 181  LDKAERLFDDML-DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
            LD+A  L  DM  +  +KP+ + +STLI         NKA+  +  M   G  P+ +TY+
Sbjct: 994  LDEALSLLKDMKKNSNIKPNTIIYSTLIKGFGQTKQLNKALNIYLTMLDEGVVPNTITYN 1053

Query: 240  SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            S+IDA  R G++  A  L +   N     D   FST+IK Y    N D  L +   M   
Sbjct: 1054 SIIDACARVGDMNKAANLLEDMLNNNIEPDLITFSTVIKGYCVQSNMDRSLQLLRAMSER 1113

Query: 300  GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
            G+KP+ I YN+LLD   ++ RPW  + ++ EM +NG++P+  T   L++ YGR    +  
Sbjct: 1114 GIKPDGILYNSLLDGCVKSGRPWLCQQLWDEMQENGIAPSNFTLTILIKMYGRLGQLDKA 1173

Query: 360  LSVYREMKEK-GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
              +  E+  K  +Q +  +Y  L++ C   G    A ++F  M  +    PDS T+ ++I
Sbjct: 1174 FQLMDELPRKYNIQTNTHVYTCLMSACITNGKYKMALDVFNCMNGN-GIVPDSKTYETII 1232



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 140/335 (41%), Gaps = 75/335 (22%)

Query: 204  STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV------------ 251
            + L +C R+N+ P+  +E   +   FG  PD  TY  +I  +  + NV            
Sbjct: 912  AILDACIRINS-PDHLLESVNKYKKFGFHPDLQTYGLLIKFFSSSDNVMECFHLWNEMTS 970

Query: 252  -------EMAFG------------------LYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
                   E+ +G                  L D  +N   + +   +STLIK +G     
Sbjct: 971  LYGYELNEVTYGCMFDALVSNNMLDEALSLLKDMKKNSNIKPNTIIYSTLIKGFGQTKQL 1030

Query: 287  DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
            +  LN+Y  M   GV PN ITYN+++D   R     +   + ++M +N + P+  T++++
Sbjct: 1031 NKALNIYLTMLDEGVVPNTITYNSIIDACARVGDMNKAANLLEDMLNNNIEPDLITFSTV 1090

Query: 347  LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
            ++ Y      + +L + R M E+G++    LYN+LL  C   G                 
Sbjct: 1091 IKGYCVQSNMDRSLQLLRAMSERGIKPDGILYNSLLDGCVKSG----------------- 1133

Query: 407  CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             +P  W       +C         + +++EM E G  P+ F LT LI+ YG+  + D   
Sbjct: 1134 -RP--W-------LC---------QQLWDEMQENGIAPSNFTLTILIKMYGRLGQLDKAF 1174

Query: 467  RALNRLP-ELGITPDDRFCGCLLNVMTQTPKEELG 500
            + ++ LP +  I  +     CL++      K ++ 
Sbjct: 1175 QLMDELPRKYNIQTNTHVYTCLMSACITNGKYKMA 1209



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 96/195 (49%), Gaps = 11/195 (5%)

Query: 166  ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
            I YN  +    +  D++KA  L +DML+  ++PD +TFST+I    + +  +++++    
Sbjct: 1050 ITYNSIIDACARVGDMNKAANLLEDMLNNNIEPDLITFSTVIKGYCVQSNMDRSLQLLRA 1109

Query: 226  MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTA 283
            M   G  PD + Y+S++D   ++G   +   L+D  +     I P+ F  + LIK+YG  
Sbjct: 1110 MSERGIKPDGILYNSLLDGCVKSGRPWLCQQLWDEMQENG--IAPSNFTLTILIKMYGRL 1167

Query: 284  GNFDGCLNVYEEM-KAIGVKPNMITYNNLLD---TMGRAKRPWQVKTIYKEMTDNGLSPN 339
            G  D    + +E+ +   ++ N   Y  L+    T G+ K    V   +  M  NG+ P+
Sbjct: 1168 GQLDKAFQLMDELPRKYNIQTNTHVYTCLMSACITNGKYKMALDV---FNCMNGNGIVPD 1224

Query: 340  WNTYASLLRAYGRAR 354
              TY +++    + R
Sbjct: 1225 SKTYETIIFGAIKGR 1239


>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
           [Vitis vinifera]
          Length = 990

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 163/345 (47%), Gaps = 33/345 (9%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +++  K    D++  LF +M ++G  P+ + ++T+I     N + +K +  F +M 
Sbjct: 115 YTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMV 174

Query: 228 SFGCDPDALTYSSMID---AYGRAGNVEMAFGLYDRARNEK------------------- 265
              C P+  T+S +++   A G+ G ++    + ++  N+                    
Sbjct: 175 ENNCRPNGFTFSVILNVLVAEGQLGRLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASEAH 234

Query: 266 ------WRI----DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
                 W      D +A+ ++++    AG     L++  ++    +  + + YN +L  +
Sbjct: 235 RLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSAL 294

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           G+ K+   +  +Y++M  +G SP+  +Y  L+ ++GRA   E+ + ++ E++    +  +
Sbjct: 295 GKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDI 354

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             +N+L+      G  DEA   F++M+  E   PD  T+S++I       KV  A  +F+
Sbjct: 355 ISFNSLINCLGKNGDIDEAHMRFKEMRE-EGLSPDVVTYSTLIECFGKTDKVEMACRLFD 413

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           EML  G  PN+     L+ C  ++ RT + V    +L + G+TPD
Sbjct: 414 EMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPD 458



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 164/376 (43%), Gaps = 38/376 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++  YN+ +    K   +D+   +F DM  +  +PD  T++ +I         ++++  F
Sbjct: 76  DIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLF 135

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY--- 280
           + M   G  P+ + Y++MI A      V+    L+ +      R +   FS ++ +    
Sbjct: 136 QEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAE 195

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMI-----------------------------TYNNL 311
           G  G  D  + V  +     +   ++                              Y ++
Sbjct: 196 GQLGRLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSM 255

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           L+++  A +  +   +  ++ +  +S +   Y ++L A G+ +   D   +Y +MK+ G 
Sbjct: 256 LESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGP 315

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
              +  YN L++     G  +EA +IFE++++S +C+PD  +F+S+I      G + EA 
Sbjct: 316 SPDIFSYNILISSFGRAGRVEEAVKIFEELENS-SCKPDIISFNSLINCLGKNGDIDEAH 374

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
             F EM E G  P++   ++LI+C+GK  + +   R  + +   G +P+      LL+ +
Sbjct: 375 MRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCL 434

Query: 492 TQTPKEELGKLVECVE 507
                E  G+  E V+
Sbjct: 435 -----ERSGRTAEAVD 445



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 104/202 (51%)

Query: 147 TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           T AL L    ++ + S + ++YN  +    K +       L++ M   G  PD  +++ L
Sbjct: 266 TEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNIL 325

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
           IS         +AV+ FE + +  C PD ++++S+I+  G+ G+++ A   +   R E  
Sbjct: 326 ISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGL 385

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             D   +STLI+ +G     +    +++EM A G  PN++TYN LLD + R+ R  +   
Sbjct: 386 SPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVD 445

Query: 327 IYKEMTDNGLSPNWNTYASLLR 348
           +Y ++   GL+P+  TYA L R
Sbjct: 446 LYAKLKQQGLTPDSITYAVLER 467



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 160/348 (45%), Gaps = 14/348 (4%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + +F    D+   ER FD +    ++ +  T+  L+     +N  NKA E +  +  
Sbjct: 14  NILIGIFGGGADV---ERCFDLVKKWDLQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRR 70

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G   D   Y+ ++DA  +   V+  + ++   + +    D   ++ +I++ G  G  D 
Sbjct: 71  RGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADE 130

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L +++EM   G  PN+I YN ++  +   +   +   ++ +M +N   PN  T++ +L 
Sbjct: 131 SLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILN 190

Query: 349 ---AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
              A G+    ++ + V  +   K      ++Y  L+   + +G+  EA  +F +M S  
Sbjct: 191 VLVAEGQLGRLDEVVEVSNKFMNK------SIYAYLVRTLSKLGHASEAHRLFCNMWSFH 244

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           + + D   + SM+      GK +EA  + +++ E     +  +  +++   GK ++T D+
Sbjct: 245 D-EGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDL 303

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 512
                ++ + G +PD      L++   +  + EE  K+ E +E S+ K
Sbjct: 304 HDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCK 351



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 99/195 (50%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           L   + ++ +  D V ++T++S        +   + +E+M   G  PD  +Y+ +I ++G
Sbjct: 271 LLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFG 330

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           RAG VE A  +++   N   + D  +F++LI   G  G+ D     ++EM+  G+ P+++
Sbjct: 331 RAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVV 390

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TY+ L++  G+  +      ++ EM   G SPN  TY  LL    R+    + + +Y ++
Sbjct: 391 TYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKL 450

Query: 367 KEKGMQLSVTLYNTL 381
           K++G+      Y  L
Sbjct: 451 KQQGLTPDSITYAVL 465



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 60/116 (51%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I +N  +    K  D+D+A   F +M + G+ PD VT+STLI C    +    A   F
Sbjct: 353 DIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLF 412

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           + M + GC P+ +TY+ ++D   R+G    A  LY + + +    D   ++ L +L
Sbjct: 413 DEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLERL 468



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 95/209 (45%), Gaps = 7/209 (3%)

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           R   +  + LI ++G   + + C ++   +K   ++ N  TY  LL    R+    +   
Sbjct: 7   RGSISTINILIGIFGGGADVERCFDL---VKKWDLQMNCYTYKCLLQAHLRSNNSNKAFE 63

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +Y E+   G   +   Y  LL A  +    +    V+++MK K  +     Y  ++ M  
Sbjct: 64  VYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTG 123

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
            +G  DE+  +F++M + +   P+   +++MI   +    V +   +F++M+E    PN 
Sbjct: 124 KIGKADESLTLFQEM-TEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNG 182

Query: 447 F---VLTSLIQCYGKAQRTDDVVRALNRL 472
           F   V+ +++   G+  R D+VV   N+ 
Sbjct: 183 FTFSVILNVLVAEGQLGRLDEVVEVSNKF 211


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 159/363 (43%), Gaps = 36/363 (9%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  V+ Y+  +  F K  ++DKA  LFD+M+ +G  PD VT+S+LI         NKA  
Sbjct: 200 SPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEA 259

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + M   G  P+  TY+ MI  Y   G +E A  L  +      + D   +  LI+ Y 
Sbjct: 260 ILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYC 319

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G      +V++ M   G KPN   Y+ LL           V+ +   M  +G+     
Sbjct: 320 KIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHR 379

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            +  L+ AY +    +  ++ + EM++ G++  V  Y+T++ +   +G  ++A   F  M
Sbjct: 380 AFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQM 439

Query: 402 KSSENCQPDSWTFSSMI-TICS---------------------------------CR-GK 426
             SE   P+  +F+S+I  +CS                                 C+ G+
Sbjct: 440 -VSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGR 498

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
           V EA+  F+ ++  G +PN+    +LI  Y    + D+ ++  +R+  +G+ PD      
Sbjct: 499 VVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNA 558

Query: 487 LLN 489
           LLN
Sbjct: 559 LLN 561



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 159/365 (43%), Gaps = 52/365 (14%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG---CDPDALTY 238
           D  + +F  M + G  PD  +++ LI    +     +A+E    M + G   C P+ ++Y
Sbjct: 147 DAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSY 206

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRID----------------------------- 269
           S++ID + + G V+ A+ L+D    + +  D                             
Sbjct: 207 STIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFD 266

Query: 270 ----PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
               PN   ++ +I+ Y + G  +  + + ++M   G++P+++TY  L+    +  R  +
Sbjct: 267 KGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAE 326

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
            ++++  M   G  PN   Y  LL  Y       D   +   M   G+      +N L+ 
Sbjct: 327 ARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILIC 386

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
             A  G  D+A   F +M+ +   +PD  ++S++I I    G+V +A   FN+M+  G  
Sbjct: 387 AYAKHGAVDKAMTAFTEMRQN-GLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLS 445

Query: 444 PNLFVLTSLIQ---CYGKAQRTDDVV-RALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 499
           PN+   TSLI      G+ ++ +++    +NR    GI PD  F      +M    KE  
Sbjct: 446 PNIISFTSLIHGLCSIGEWKKVEELAFEMINR----GIHPDAIFMN---TIMDNLCKE-- 496

Query: 500 GKLVE 504
           G++VE
Sbjct: 497 GRVVE 501



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 134/292 (45%), Gaps = 39/292 (13%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           K E L  +M++RG+ PD +  +T++          +A ++F+ +   G  P+ ++Y+++I
Sbjct: 466 KVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLI 525

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
           D Y   G ++ +   +DR  +   R D   ++ L+  Y   G  +  L +Y EM    VK
Sbjct: 526 DGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVK 585

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
              IT N +L  + +A R    + +Y +M D                             
Sbjct: 586 FCAITSNIILHGLFQAGRIVAARELYMKMVD----------------------------- 616

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
                 +G QL +  YNT+L    +    DEA  +FED++S E  + D WTF+ +I    
Sbjct: 617 ------RGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKE-FELDVWTFNIVINALL 669

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNR 471
             G++ EA+++F+ M+  G  P++   + +I+     G  + +DD+  ++ +
Sbjct: 670 KVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEK 721



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 132/305 (43%), Gaps = 39/305 (12%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I  N  M    K   + +A+  FD ++  GVKP+ V+++TLI         +++++ F
Sbjct: 482 DAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQF 541

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           +RM S G  PD+ TY+++++ Y + G VE A  LY     E +R D              
Sbjct: 542 DRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALY----REMFRKD-------------- 583

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                            VK   IT N +L  + +A R    + +Y +M D G      TY
Sbjct: 584 -----------------VKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETY 626

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            ++L         ++ L ++ +++ K  +L V  +N ++     VG  DEA  +F  M  
Sbjct: 627 NTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAM-V 685

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                P   T+S MI      G + E++ +F  M + G   +  +L  +I+   +     
Sbjct: 686 LRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGCAADSHMLNVIIR---RLLEKG 742

Query: 464 DVVRA 468
           DV RA
Sbjct: 743 DVRRA 747



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 117/277 (42%), Gaps = 35/277 (12%)

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEM 331
              LI+ + T G  D     +     +G +   +T N L+  +   KR    +  +++ M
Sbjct: 97  IGILIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQLIKGLCDGKRTDDAMDMVFRRM 156

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
            + G +P+  +Y +L++     +  ++ L +                  LL M AD GY 
Sbjct: 157 PELGYTPDVFSYNALIKGLCVEKKSQEALEL------------------LLHMTADGGY- 197

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
                         NC P+  ++S++I      G+V +A  +F+EM+  GF P++   +S
Sbjct: 198 --------------NCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSS 243

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 510
           LI    KAQ  +     L  + + G+ P+ R    ++       + EE  +L++ +  S 
Sbjct: 244 LIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSG 303

Query: 511 SKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKK 547
            +   V  +LL +   +     EA  +F+S+ +  +K
Sbjct: 304 LQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQK 340



 Score = 38.9 bits (89), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 50/112 (44%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N+ +    K   +D+A+ LF  M+ RG  P  +T+S +I       L  ++ + F  M 
Sbjct: 661 FNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSME 720

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
             GC  D+   + +I      G+V  A     +   + + ++ +  + LI +
Sbjct: 721 KNGCAADSHMLNVIIRRLLEKGDVRRAGTYLTKIDEKNFSVEASTAALLIPI 772


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 165/367 (44%), Gaps = 36/367 (9%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           KL     ++ +N  +    K     +A  LFDDM+ RG +PD  T++T+I+         
Sbjct: 185 KLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETV 244

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE------------- 264
            A   F +M   GC PD +TYS++ID+  +   V  A  ++   + +             
Sbjct: 245 AAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLI 304

Query: 265 -------KWR-------------IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
                  +WR             I PN   FS LI ++   GN      V + M  +GV+
Sbjct: 305 QGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVE 364

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           PN++TY++L++         + + ++  M   G  P+  +Y  L+  Y +A+   +   +
Sbjct: 365 PNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQL 424

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
           + EM  +G+   +  YNTL+     +G   EA ++F++M ++ N  PD  T+S ++    
Sbjct: 425 FNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNL-PDLCTYSILLDGFC 483

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
            +G +++A  +F  M     +PN+ +   LI    K++   +  +  + L   G+ P+ +
Sbjct: 484 KQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQ 543

Query: 483 FCGCLLN 489
               ++N
Sbjct: 544 IYTTIIN 550



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 144/301 (47%), Gaps = 7/301 (2%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +A  + ++M+   + P+ VTFS LI+  C   N    + V   + M   G +P+ +TYSS
Sbjct: 315 EASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGV--LKTMTEMGVEPNVVTYSS 372

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +++ Y     V  A  L+D    +  + D  +++ LI  Y  A        ++ EM   G
Sbjct: 373 LMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQG 432

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           + P++++YN L+D + +  R  +   ++K M  NG  P+  TY+ LL  + +  Y     
Sbjct: 433 LTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAF 492

Query: 361 SVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
            ++R M+   ++ ++ +YN L+ AMC       EA ++F ++   +  QP+   ++++I 
Sbjct: 493 RLFRAMQSTYLKPNMVMYNILIDAMCKSRN-LKEARKLFSEL-FVQGLQPNVQIYTTIIN 550

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                G + EA   F  M E G  PN F    +I+ + + +     V+ +  + E G   
Sbjct: 551 GLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVA 610

Query: 480 D 480
           D
Sbjct: 611 D 611



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 143/280 (51%), Gaps = 5/280 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ +++ + +F K  ++ +A  +   M + GV+P+ VT+S+L++   +     +A + F+
Sbjct: 332 IVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFD 391

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M + GC PD  +Y+ +I+ Y +A  +  A  L++   ++    D  +++TLI      G
Sbjct: 392 VMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLG 451

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT--IYKEMTDNGLSPNWNT 342
                 ++++ M   G  P++ TY+ LLD  G  K+ +  K   +++ M    L PN   
Sbjct: 452 RLREAHDLFKNMLTNGNLPDLCTYSILLD--GFCKQGYLAKAFRLFRAMQSTYLKPNMVM 509

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y  L+ A  ++R  ++   ++ E+  +G+Q +V +Y T++      G  DEA E F +M+
Sbjct: 510 YNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNME 569

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
             + C P+ ++++ +I         S A  +  EM E GF
Sbjct: 570 -EDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGF 608



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 103/219 (47%), Gaps = 35/219 (15%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  YN+ +  + K + + +A++LF++M+ +G+ PD V+++TLI          +A + F
Sbjct: 401 DVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLF 460

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M + G  PD  TYS ++D + + G +  AF L                          
Sbjct: 461 KNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRL-------------------------- 494

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                    +  M++  +KPNM+ YN L+D M +++   + + ++ E+   GL PN   Y
Sbjct: 495 ---------FRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIY 545

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
            +++    +    ++ L  +R M+E G   +   YN ++
Sbjct: 546 TTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVII 584


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 152/329 (46%), Gaps = 3/329 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  ++ YNV +    +  ++D+A  L   M  +G+  D  T+S LI          +A  
Sbjct: 268 SPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKL 327

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             E M S G  P  + Y+++ID + R G+   AF + +       +++   ++ L+K   
Sbjct: 328 MLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVC 387

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G+ +    +  EM  +G+KP+  TYNN+++   + +   +VK +  EM  + L P   
Sbjct: 388 KFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAY 447

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T   ++    R    ED   V+  M   G++ +  +Y TL+      G   EA  I + M
Sbjct: 448 TCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVM 507

Query: 402 KSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
              +  QPD   ++S+I  +C  R K+ EA+    EM+E G +PN++   +LI  Y K+ 
Sbjct: 508 -DKKGVQPDVLCYNSVIIGLCKSR-KMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSG 565

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLN 489
                 R    +   GI P+D  C  L++
Sbjct: 566 EMQVADRYFKEMLGCGIAPNDVVCTALID 594



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 162/362 (44%), Gaps = 37/362 (10%)

Query: 164  EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
            +V  YN  +  F K   + KA +L + M  +G+ P+ +T++ LI+         +A E F
Sbjct: 655  DVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELF 714

Query: 224  ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            + +P  G   +A+TY+++ID Y ++GN+  AF L+D    +    D   +S LI      
Sbjct: 715  DGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKE 774

Query: 284  GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            GN +  L+++ E    G      + N L+D   ++ +  +   + ++M D  + P+  TY
Sbjct: 775  GNTEKALSLFLESVQKGFASTS-SLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTY 833

Query: 344  ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
              L+  + +  + ++    + +M+++ +  +   Y  LL+     G   E F +F++M  
Sbjct: 834  TILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEM-I 892

Query: 404  SENCQPDSWTFSSMI----------------------------TICS------CRGK-VS 428
            +++ +PD  T+S MI                             +C       CR + VS
Sbjct: 893  AKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVS 952

Query: 429  EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
            E   +  ++ E G   +L   ++L++C+ KA + D   R L  +      PD      L+
Sbjct: 953  EVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPDSTELNDLI 1012

Query: 489  NV 490
            NV
Sbjct: 1013 NV 1014



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 145/350 (41%), Gaps = 35/350 (10%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  Y   +  + K  ++  A+R F +ML  G+ P++V  + LI          +A   F 
Sbjct: 551 VYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFR 610

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M      PD  TYS++I    R G ++ A  L      +    D   ++++I  +   G
Sbjct: 611 CMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQG 670

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  ++E M   G+ PN+ITYN L++ + +A    + + ++  +   GL+ N  TYA
Sbjct: 671 GIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYA 730

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF------ 398
           +++  Y ++        ++ EM  KG+     +Y+ L+  C   G T++A  +F      
Sbjct: 731 TIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQK 790

Query: 399 ----------------------------EDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
                                       EDM   ++ +PD  T++ +I      G + EA
Sbjct: 791 GFASTSSLNALMDGFCKSGKVIEANQLLEDM-VDKHVKPDHVTYTILIDYHCKTGFLKEA 849

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           E  F +M +    PN    T+L+  Y  A R  ++    + +    I PD
Sbjct: 850 EQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPD 899



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 148/329 (44%), Gaps = 9/329 (2%)

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCA-RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244
           R ++ ML+  V  D  T++ LI+   R  N        FE M   GC P  +TY+ +I  
Sbjct: 222 RFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFE-MEEKGCSPSLVTYNVVIGG 280

Query: 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
             RAG V+ AF L      +    D   +S LI  +G          + EEM + G+KP 
Sbjct: 281 LCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPG 340

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG--EDTLSV 362
            + Y  L+D   R     +   + +EM   G+  N  TY +L++  G  ++G  E   ++
Sbjct: 341 HVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVK--GVCKFGDMEKADAL 398

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
             EM   G++     YN ++        T    ++  +MK S N  P ++T   +I    
Sbjct: 399 LNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKS-NLVPTAYTCGMIINGLC 457

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
             G + +A  +F  M+  G +PN  + T+LI+ + +  R  + VR L  + + G+ PD  
Sbjct: 458 RHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVL 517

Query: 483 FCGCLLNVMTQTPKEELGK--LVECVEKS 509
               ++  + ++ K E  K  LVE +E+ 
Sbjct: 518 CYNSVIIGLCKSRKMEEAKDYLVEMIERG 546



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 177/397 (44%), Gaps = 16/397 (4%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           DRGV      F  LI   +   L ++AV +F      G     L  + ++    +A  +E
Sbjct: 164 DRGV-----VFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLE 218

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
           + +  Y+         D   ++ LI  +  AGN      +  EM+  G  P+++TYN ++
Sbjct: 219 LFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVI 278

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
             + RA    +   + K M   GL  +  TY+ L+  +G+ +   +   +  EM  KG++
Sbjct: 279 GGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLK 338

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
                Y  L+      G + EAF + E+M  +   + + +T+++++      G + +A+A
Sbjct: 339 PGHVAYTALIDGFMRQGDSGEAFRVKEEM-LARGVKLNLFTYNALVKGVCKFGDMEKADA 397

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           + NEM+  G +P+     ++I+ Y K Q T  V   L+ + +  + P    CG ++N + 
Sbjct: 398 LLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLC 457

Query: 493 QTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDVKK--- 547
           +    E+  ++ E +     K   V+   L +  + EG F +EA  +   + K   +   
Sbjct: 458 RHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRF-QEAVRILKVMDKKGVQPDV 516

Query: 548 -AYCNCLIDLCVNLNLLENA---CKLLELGLTLEVYT 580
             Y + +I LC +  + E      +++E GL   VYT
Sbjct: 517 LCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYT 553



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 147/348 (42%), Gaps = 36/348 (10%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-------SCARMNNLPNK-- 218
           YN  +K   K  D++KA+ L ++M+  G+KPD  T++ +I       + +R+ +L ++  
Sbjct: 379 YNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMK 438

Query: 219 --------------------------AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
                                     A   FE M S G  P+A+ Y+++I  + + G  +
Sbjct: 439 KSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQ 498

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  +      +  + D   ++++I     +   +   +   EM   G+KPN+ TY  L+
Sbjct: 499 EAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALI 558

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
               ++         +KEM   G++PN     +L+  Y +     +  S++R M  + + 
Sbjct: 559 HGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVH 618

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
             V  Y+ L+      G    A E+  +    +   PD +T++S+I+    +G + +A  
Sbjct: 619 PDVRTYSALIHGLLRNGKLQGAMELLSEF-LEKGLVPDVFTYNSIISGFCKQGGIGKAFQ 677

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +   M + G  PN+    +LI    KA   +      + +P  G+  +
Sbjct: 678 LHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHN 725



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 110/240 (45%)

Query: 169  NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
            N  M  F K   + +A +L +DM+D+ VKPD+VT++ LI          +A ++F  M  
Sbjct: 799  NALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQK 858

Query: 229  FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
                P+ALTY++++  Y  AG     F L+D    +    D   +S +I  +   G+   
Sbjct: 859  RNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVK 918

Query: 289  CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
             L + ++M   G   +    + L+D + R +   +V  + +++ + GL+ +  T ++L+R
Sbjct: 919  TLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVR 978

Query: 349  AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
             + +A   +    V + M         T  N L+ +  D   ++ A +  + M     CQ
Sbjct: 979  CFHKAGKMDGAARVLKSMVRFKWVPDSTELNDLINVEQDSTDSENAGDFLKQMAWEVACQ 1038


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 168/369 (45%), Gaps = 5/369 (1%)

Query: 133 QDCVIILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDD 190
             C  +L+ M N ++     T+++  L+     +V  YN+ +  F K   +  A+ +F++
Sbjct: 189 HGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNE 248

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           +  RG++P  V+F+TLI+    +   ++     + M      PD  TYS +I    + G 
Sbjct: 249 IRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGR 308

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
           +++A  L+D  +    R +   F+ LI     +   D  +N Y +M  +GVKP+++ YN 
Sbjct: 309 LDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNT 368

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           LL+ + +     + + +  EM   G+ P+  TY +L+  Y +    E  + + + M E+G
Sbjct: 369 LLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEG 428

Query: 371 MQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           + L    +  L++  C D G   +A     +M  +   +PD  T++ +I     +G V  
Sbjct: 429 VVLDNVAFTALISGFCRD-GRVRDAERTLREMVEA-GMKPDDATYTMVIDGYCKKGNVKM 486

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
              +  EM   G +P +     L+    K  +  +    L  +  LG+TPDD     LL 
Sbjct: 487 GFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLE 546

Query: 490 VMTQTPKEE 498
              +  K E
Sbjct: 547 GHCKNGKAE 555



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 161/367 (43%), Gaps = 30/367 (8%)

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
           N P     ++  +  +G  P    Y+ +I+ + + G++  A  +++  R    R    +F
Sbjct: 202 NSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSF 261

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           +TLI     + N D    + + M+   + P++ TY+ L+  + +  R    + ++ EM  
Sbjct: 262 NTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQ 321

Query: 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
            GL PN  T+ +L+    R+R  +  ++ Y +M   G++  + +YNTLL     VG  ++
Sbjct: 322 RGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNK 381

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A ++ ++MK     +PD  T++++I      G +  A  +   M E G   +    T+LI
Sbjct: 382 ARKLVDEMKMV-GMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALI 440

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL 513
             + +  R  D  R L  + E G+ PDD     +++                 +K N K+
Sbjct: 441 SGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVID--------------GYCKKGNVKM 486

Query: 514 GYVVKLLLEEQDIEGDFKKEATE--LFNSISKDVKKAYCNCLIDLCVNLN---------- 561
           G+    LL+E  I G      T   L N + K  +    N L++  +NL           
Sbjct: 487 GFK---LLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNI 543

Query: 562 LLENACK 568
           LLE  CK
Sbjct: 544 LLEGHCK 550



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 135/296 (45%), Gaps = 4/296 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y+V +    K   LD AE+LFD+M  RG++P+ +TF+ LI     +   + A+  +
Sbjct: 292 DVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTY 351

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M + G  PD + Y+++++   + G+V  A  L D  +    + D   ++TLI  Y   
Sbjct: 352 HQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKE 411

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+ +  + + + M   GV  + + +  L+    R  R    +   +EM + G+ P+  TY
Sbjct: 412 GDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATY 471

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++  Y +    +    + +EM+  G +  V  YN L+      G    A  + E M +
Sbjct: 472 TMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLN 531

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
                PD  T++ ++      GK   AE +     E G   +    TSL+  Y K+
Sbjct: 532 L-GVTPDDITYNILLEGHCKNGK---AEDLLKLRNEKGLIVDYAYYTSLVSEYNKS 583



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 141/306 (46%), Gaps = 7/306 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N  +    K R+LD+  RL   M +  + PD  T+S LI         + A + F+ M 
Sbjct: 261 FNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQ 320

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P+ +T++++ID   R+  ++ A   Y +      + D   ++TL+      G+ +
Sbjct: 321 QRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVN 380

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + +EMK +G+KP+ ITY  L+D   +         I K M + G+  +   + +L+
Sbjct: 381 KARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALI 440

Query: 348 RAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
             +   GR R  E TL   REM E GM+     Y  ++      G     F++ ++M+ +
Sbjct: 441 SGFCRDGRVRDAERTL---REMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQIN 497

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            + +P   T++ ++     +G++  A  +   ML  G  P+      L++ + K  + +D
Sbjct: 498 GH-KPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAED 556

Query: 465 VVRALN 470
           +++  N
Sbjct: 557 LLKLRN 562


>gi|167998294|ref|XP_001751853.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696951|gb|EDQ83288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 657

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 163/369 (44%), Gaps = 39/369 (10%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L  +  K    + +  +N  M    +C   D A  LF++M + G+ PDN+TF  L+S
Sbjct: 227 ALKLFRWMEKQGIERPIYTFNALMVACGRCGAGDTAVELFEEMKELGLAPDNITFRGLVS 286

Query: 209 ------------------------------------CARMNNLPNKAVEWFERMPSFGCD 232
                                               CAR  N   +++   + M   GC+
Sbjct: 287 ATTAAGKWKAAQSFINLMQAGGFSFAIGEFTEMQWACARARN-SRESLGLLQAMIEQGCE 345

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           P    Y++++ AY +  N E A       + + +  D   +S+L+     AG  +  + V
Sbjct: 346 PRLENYNALLCAYEKTANWEEAVRTVVWIQEKGFTPDFITWSSLLGACANAGQAEKAVAV 405

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
            E+MK     PN++++  LL    +     + + I+  M ++G  PN   + SLL AY +
Sbjct: 406 MEKMKENNFTPNVVSWCYLLKAYQKTGNWEKTEEIFHSMLNSGCPPNEVAWNSLLSAYEK 465

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
            R  +  L    + +E G++L V  ++T ++  A  G    A +    MK S  CQP+  
Sbjct: 466 GRQWKRVLYTIEKQEELGVKLDVVAWSTTISALAKAGQWQLAEKKIRQMKQS-GCQPNIV 524

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR- 471
           T+SS+I      G  ++AE++F  ML  G  P+     +L++ Y K ++ D V+   +  
Sbjct: 525 TYSSLIKAYGDVGLWNKAESVFKSMLLEGIRPDSKACCALLRAYAKGRQLDKVMFFFDSM 584

Query: 472 LPELGITPD 480
           +P  GI PD
Sbjct: 585 MPRYGIKPD 593



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 139/306 (45%), Gaps = 2/306 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +  + K  + ++A R    + ++G  PD +T+S+L+          KAV   E+M 
Sbjct: 351 YNALLCAYEKTANWEEAVRTVVWIQEKGFTPDFITWSSLLGACANAGQAEKAVAVMEKMK 410

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                P+ +++  ++ AY + GN E    ++    N     +  A+++L+  Y     + 
Sbjct: 411 ENNFTPNVVSWCYLLKAYQKTGNWEKTEEIFHSMLNSGCPPNEVAWNSLLSAYEKGRQWK 470

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV-KTIYKEMTDNGLSPNWNTYASL 346
             L   E+ + +GVK +++ ++  +  + +A + WQ+ +   ++M  +G  PN  TY+SL
Sbjct: 471 RVLYTIEKQEELGVKLDVVAWSTTISALAKAGQ-WQLAEKKIRQMKQSGCQPNIVTYSSL 529

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           ++AYG         SV++ M  +G++        LL   A     D+    F+ M     
Sbjct: 530 IKAYGDVGLWNKAESVFKSMLLEGIRPDSKACCALLRAYAKGRQLDKVMFFFDSMMPRYG 589

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            +PD + ++++   C   G+   A      M  AG  P+  + T+LI  Y    + D  +
Sbjct: 590 IKPDKYAYAAIFWACWTCGEWQRAADYMENMEAAGCTPDTMIYTTLITMYEAHGQVDKAM 649

Query: 467 RALNRL 472
             L ++
Sbjct: 650 EILKKM 655



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 136/312 (43%), Gaps = 1/312 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           NV +    + R+ D A R+F       V+P+    +TLI+         +A++ F  M  
Sbjct: 177 NVVVWQLGQMRNWDAASRVFRAFRSASVEPNAHVCTTLIAVLGYGRRLPEALKLFRWMEK 236

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G +    T+++++ A GR G  + A  L++  +      D   F  L+     AG +  
Sbjct: 237 QGIERPIYTFNALMVACGRCGAGDTAVELFEEMKELGLAPDNITFRGLVSATTAAGKWKA 296

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
             +    M+A G    +  +  +     RA+   +   + + M + G  P    Y +LL 
Sbjct: 297 AQSFINLMQAGGFSFAIGEFTEMQWACARARNSRESLGLLQAMIEQGCEPRLENYNALLC 356

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           AY +    E+ +     ++EKG       +++LL  CA+ G  ++A  + E MK + N  
Sbjct: 357 AYEKTANWEEAVRTVVWIQEKGFTPDFITWSSLLGACANAGQAEKAVAVMEKMKEN-NFT 415

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           P+  ++  ++      G   + E +F+ ML +G  PN     SL+  Y K ++   V+  
Sbjct: 416 PNVVSWCYLLKAYQKTGNWEKTEEIFHSMLNSGCPPNEVAWNSLLSAYEKGRQWKRVLYT 475

Query: 469 LNRLPELGITPD 480
           + +  ELG+  D
Sbjct: 476 IEKQEELGVKLD 487



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 117/277 (42%), Gaps = 4/277 (1%)

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           R+D  + + ++   G   N+D    V+   ++  V+PN      L+  +G  +R  +   
Sbjct: 170 RVDVRSMNVVVWQLGQMRNWDAASRVFRAFRSASVEPNAHVCTTLIAVLGYGRRLPEALK 229

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +++ M   G+     T+ +L+ A GR   G+  + ++ EMKE G+      +  L++   
Sbjct: 230 LFRWMEKQGIERPIYTFNALMVACGRCGAGDTAVELFEEMKELGLAPDNITFRGLVSATT 289

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G    A + F ++  +         F+ M   C+      E+  +   M+E G EP L
Sbjct: 290 AAGKWKAA-QSFINLMQAGGFSFAIGEFTEMQWACARARNSRESLGLLQAMIEQGCEPRL 348

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 506
               +L+  Y K    ++ VR +  + E G TPD      LL       + E    V   
Sbjct: 349 ENYNALLCAYEKTANWEEAVRTVVWIQEKGFTPDFITWSSLLGACANAGQAEKAVAVMEK 408

Query: 507 EKSNSKLGYVVKL--LLEEQDIEGDFKKEATELFNSI 541
            K N+    VV    LL+     G+++K   E+F+S+
Sbjct: 409 MKENNFTPNVVSWCYLLKAYQKTGNWEK-TEEIFHSM 444



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 142/347 (40%), Gaps = 53/347 (15%)

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFD 287
           G   D  + + ++   G+  N + A  ++   R+    ++PNA   +TLI + G      
Sbjct: 168 GLRVDVRSMNVVVWQLGQMRNWDAASRVFRAFRSAS--VEPNAHVCTTLIAVLGYGRRLP 225

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN-------- 339
             L ++  M+  G++  + T+N L+   GR         +++EM + GL+P+        
Sbjct: 226 EALKLFRWMEKQGIERPIYTFNALMVACGRCGAGDTAVELFEEMKELGLAPDNITFRGLV 285

Query: 340 --------W---NTYASLLRAYG----------------RARYGEDTLSVYREMKEKGMQ 372
                   W    ++ +L++A G                RAR   ++L + + M E+G +
Sbjct: 286 SATTAAGKWKAAQSFINLMQAGGFSFAIGEFTEMQWACARARNSRESLGLLQAMIEQGCE 345

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
             +  YN LL         +EA      ++  +   PD  T+SS++  C+  G+  +A A
Sbjct: 346 PRLENYNALLCAYEKTANWEEAVRTVVWIQ-EKGFTPDFITWSSLLGACANAGQAEKAVA 404

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN--- 489
           +  +M E  F PN+     L++ Y K    +      + +   G  P++     LL+   
Sbjct: 405 VMEKMKENNFTPNVVSWCYLLKAYQKTGNWEKTEEIFHSMLNSGCPPNEVAWNSLLSAYE 464

Query: 490 --------VMTQTPKEELGKLVECVEKSN--SKLGYVVKLLLEEQDI 526
                   + T   +EELG  ++ V  S   S L    +  L E+ I
Sbjct: 465 KGRQWKRVLYTIEKQEELGVKLDVVAWSTTISALAKAGQWQLAEKKI 511



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 9/206 (4%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +N  +  + K R   +     +   + GVK D V +ST IS          A +   +
Sbjct: 454 VAWNSLLSAYEKGRQWKRVLYTIEKQEELGVKLDVVAWSTTISALAKAGQWQLAEKKIRQ 513

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   GC P+ +TYSS+I AYG  G    A  ++     E  R D  A   L++ Y     
Sbjct: 514 MKQSGCQPNIVTYSSLIKAYGDVGLWNKAESVFKSMLLEGIRPDSKACCALLRAYAKGRQ 573

Query: 286 FDGCLNVYEEMKA-IGVKPNMITYNNLL---DTMGRAKRPWQVKTIYKE-MTDNGLSPNW 340
            D  +  ++ M    G+KP+   Y  +     T G     WQ    Y E M   G +P+ 
Sbjct: 574 LDKVMFFFDSMMPRYGIKPDKYAYAAIFWACWTCGE----WQRAADYMENMEAAGCTPDT 629

Query: 341 NTYASLLRAYGRARYGEDTLSVYREM 366
             Y +L+  Y      +  + + ++M
Sbjct: 630 MIYTTLITMYEAHGQVDKAMEILKKM 655



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 172 MKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
           ++ + K R LDK    FD M+ R G+KPD   ++ +           +A ++ E M + G
Sbjct: 565 LRAYAKGRQLDKVMFFFDSMMPRYGIKPDKYAYAAIFWACWTCGEWQRAADYMENMEAAG 624

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
           C PD + Y+++I  Y   G V+ A  +  +  N
Sbjct: 625 CTPDTMIYTTLITMYEAHGQVDKAMEILKKMDN 657



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 3/157 (1%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           +L    +V+ ++ T+    K      AE+    M   G +P+ VT+S+LI       L N
Sbjct: 481 ELGVKLDVVAWSTTISALAKAGQWQLAEKKIRQMKQSGCQPNIVTYSSLIKAYGDVGLWN 540

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFST 275
           KA   F+ M   G  PD+    +++ AY +   ++     +D +   ++ I P+  A++ 
Sbjct: 541 KAESVFKSMLLEGIRPDSKACCALLRAYAKGRQLDKVMFFFD-SMMPRYGIKPDKYAYAA 599

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
           +     T G +    +  E M+A G  P+ + Y  L+
Sbjct: 600 IFWACWTCGEWQRAADYMENMEAAGCTPDTMIYTTLI 636


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 145/283 (51%), Gaps = 3/283 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +    K +    A+ LF++M++RG+ PD  TF+TLI     +   +KA+  F
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLF 525

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M      PD +TY+++ID + +AG +  A  L+D    +    D  ++ T++  + ++
Sbjct: 526 EAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSS 585

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     LN+ ++M   G++PN++T N L+    R+    +      +M  NG+ P+  +Y
Sbjct: 586 GLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSY 645

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMK 402
            +L+  Y +    E    +  EM+++G+Q ++  YN +L   CA+ G   EA ++   M 
Sbjct: 646 NTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAE-GKMQEAEQVLRKMI 704

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
                 PD  T+SS+I     +  + EA    +EML+ G  P+
Sbjct: 705 EI-GINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 165/352 (46%), Gaps = 44/352 (12%)

Query: 178 CR--DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           CR  ++ +A+ +FD+M  RGV PD V+FS+LI     N    +A+  F  M   G  PD 
Sbjct: 373 CRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDN 432

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDR--ARN------------------------------ 263
           + Y+ +ID + R G +  A  + D   AR                               
Sbjct: 433 VIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNE 492

Query: 264 --EKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
             E+  + D   F+TLI+ Y   GN D  LN++E M    +KP+ +TYN L+D   +A  
Sbjct: 493 MVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGE 552

Query: 321 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 380
             + K ++ +M    + P+  +Y ++L  +  +    + L++  +M EKG++ ++   NT
Sbjct: 553 MGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNT 612

Query: 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
           L+      G   +A+E    M S+    PDS++++++I        + +A  + NEM + 
Sbjct: 613 LIKGYCRSGDMPKAYEYLSKMISN-GIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKR 671

Query: 441 GFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           G + N+     ++  +   GK Q  + V+R   ++ E+GI PD      L+N
Sbjct: 672 GLQFNIITYNLILNGFCAEGKMQEAEQVLR---KMIEIGINPDGATYSSLIN 720



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 152/318 (47%), Gaps = 5/318 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEW 222
           ++ YN  +    K    D+A+ +  +ML  G+ P+  T++TL+   C R N L  +A E 
Sbjct: 327 LLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNIL--EAQEI 384

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F+ M   G  PD +++SS+I    R G++  A   +          D   ++ LI  +  
Sbjct: 385 FDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCR 444

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G     L + +EM A G   +++TYN  L+ + + K       ++ EM + G+ P++ T
Sbjct: 445 NGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYT 504

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           + +L+R Y +    +  L+++  M    ++     YNTL+      G    A E+++DM 
Sbjct: 505 FTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM- 563

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
             ++  PD  ++ +++      G + EA  + ++MLE G  PNL    +LI+ Y ++   
Sbjct: 564 IRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDM 623

Query: 463 DDVVRALNRLPELGITPD 480
                 L+++   GI PD
Sbjct: 624 PKAYEYLSKMISNGIIPD 641



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 159/377 (42%), Gaps = 46/377 (12%)

Query: 118 DVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRK 177
           + F +LR  G       C  +L  +       LA   +   ++   E+ +Y + + V   
Sbjct: 208 EAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNAL 267

Query: 178 CRDLDKAERLF--DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           C+D      +F   DM  +GV  D VT++TLI+      L  +A +      S G +P  
Sbjct: 268 CKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGL 327

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           LTY++++  YG         G YDRA+                            +V  E
Sbjct: 328 LTYNAIL--YGLC-----KIGKYDRAK----------------------------DVLIE 352

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M  +G+ PN  TYN LL  + R     + + I+ EM+  G+ P+  +++SL+    R  +
Sbjct: 353 MLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGH 412

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
               L  +REM+  G+     +Y  L+      G   +A ++ ++M  +  C  D  T++
Sbjct: 413 LYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEML-ARGCFMDVVTYN 471

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           + +     +   ++A+ +FNEM+E G  P+ +  T+LI+ Y K    D  +     +   
Sbjct: 472 TFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRT 531

Query: 476 GITPD--------DRFC 484
            + PD        D FC
Sbjct: 532 NLKPDKVTYNTLIDGFC 548



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 92/211 (43%), Gaps = 7/211 (3%)

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           +  L++ Y  A         ++ ++  GV  ++   N LL  + R         IY E+ 
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             G+  N  T   ++ A  + R  E+ +    +M+ KG+   +  YNTL+      G  +
Sbjct: 250 RGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVE 309

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           EAF++     SS   +P   T+++++      GK   A+ +  EML+ G  PN     +L
Sbjct: 310 EAFQLLNSF-SSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTL 368

Query: 453 IQCYGKAQRTDDVVRALNRLPEL---GITPD 480
           +    +  R D+++ A     E+   G+ PD
Sbjct: 369 LV---EICRRDNILEAQEIFDEMSRRGVLPD 396


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 149/312 (47%), Gaps = 8/312 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I YN+ +  F      D   +L  DM+ R + P+ VTFS LI          +A E  +
Sbjct: 298 IITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHK 357

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGT 282
            M   G  PD +TY+S+ID + +  +++ A  + D   ++    DPN   F+ LI  Y  
Sbjct: 358 EMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGC--DPNIRTFNILINGYCK 415

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           A   D  L ++ +M   GV  + +TYN L+       +    K +++EM    + PN  T
Sbjct: 416 ANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVT 475

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y  LL         E  L ++ ++++  M+L + +YN ++    +    D+A+++F  + 
Sbjct: 476 YKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL- 534

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKA 459
             +  +P   T++ MI     +G +SEAE +F +M E G  P+ +    LI+ +   G A
Sbjct: 535 PLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDA 594

Query: 460 QRTDDVVRALNR 471
            ++  ++  L R
Sbjct: 595 TKSVKLIEELKR 606



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 137/303 (45%), Gaps = 42/303 (13%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           + +A  L D M++ G KPD +T +TL++   ++    +A+   ++M  +GC P+A+TY  
Sbjct: 174 VSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGP 233

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +++   ++G   +A  L  +      ++D   +S +I      G+ D   N++ EM+  G
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 293

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGE 357
           +  N+ITYN L+     A R      + ++M    ++PN  T++ L+ ++   G+ R  E
Sbjct: 294 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 353

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           +   +++EM  +G+                                     PD+ T++S+
Sbjct: 354 E---LHKEMIHRGI------------------------------------APDTITYTSL 374

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I        + +A  M + M+  G +PN+     LI  Y KA R DD +    ++   G+
Sbjct: 375 IDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGV 434

Query: 478 TPD 480
             D
Sbjct: 435 VAD 437



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 138/343 (40%), Gaps = 36/343 (10%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D A  LF DM+     P  + FS L S        +  +   ++M   G   +  T S M
Sbjct: 70  DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIM 129

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I+ + R   + +AF    +     +  +   FSTLI      G     L + + M  +G 
Sbjct: 130 INCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH 189

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY----------- 350
           KP++IT N L++ +  + +  +   +  +M + G  PN  TY  +L              
Sbjct: 190 KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAME 249

Query: 351 ----------------------GRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
                                 G  ++G  ++  +++ EM+ KG+  ++  YN L+    
Sbjct: 250 LLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFC 309

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           + G  D+  ++  DM       P+  TFS +I      GK+ EAE +  EM+  G  P+ 
Sbjct: 310 NAGRWDDGAKLLRDM-IKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDT 368

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
              TSLI  + K    D   + ++ +   G  P+ R    L+N
Sbjct: 369 ITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILIN 411



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 103/220 (46%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N+ +  + K   +D    LF  M  RGV  D VT++TLI         N A E F+ M 
Sbjct: 406 FNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMV 465

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S    P+ +TY  ++D     G  E A  ++++    K  +D   ++ +I     A   D
Sbjct: 466 SRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVD 525

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              +++  +   GVKP + TYN ++  + +     + + ++++M ++G +P+  TY  L+
Sbjct: 526 DAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILI 585

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           RA+        ++ +  E+K  G  +  +    ++ M +D
Sbjct: 586 RAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSD 625



 Score = 40.4 bits (93), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 2/145 (1%)

Query: 137 IILNNMTNPDTAALALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+L+ + +   +  AL  F    K K   ++ +YN+ +        +D A  LF  +  +
Sbjct: 478 ILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK 537

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           GVKP   T++ +I         ++A   F +M   G  PD  TY+ +I A+   G+   +
Sbjct: 538 GVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKS 597

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKL 279
             L +  +   + +D +    +I +
Sbjct: 598 VKLIEELKRCGFSVDASTIKMVIDM 622


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 148/307 (48%), Gaps = 3/307 (0%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           ++LN +        A+ +  N      E   + YN+ +K        + AE+L ++M  +
Sbjct: 21  VVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHK 80

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G  P+ VTF+ LIS      L   A+E  E++P +GC P++L+Y+ ++ A+ +   ++ A
Sbjct: 81  GCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKA 140

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
               +   +     D  +++TL+      G  D  +++  ++K  G  P +I+YN ++D 
Sbjct: 141 MAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDG 200

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           + +A +  +   +  EM   GL P+  TY ++     R    E+ +  + ++++ G++ +
Sbjct: 201 LTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKVQDMGIRPT 260

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           V LYN +L        T  A ++F  M S+  C P+  T++ ++   +  G V EA  + 
Sbjct: 261 VVLYNAILLGLCKRRETHNAIDLFSYMISN-GCMPNESTYTILVEGLAYEGLVKEARDLL 319

Query: 435 NEMLEAG 441
            ++   G
Sbjct: 320 GQLCSRG 326



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 141/296 (47%), Gaps = 1/296 (0%)

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
           +L D+M D+G  PD +T++ +++        + A+E+ E +PS+G +P+ ++Y+ ++   
Sbjct: 2   KLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGL 61

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
             A   E A  L +   ++    +   F+ LI      G  +  + V E++   G  PN 
Sbjct: 62  FTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNS 121

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           ++YN LL    + K+  +     + M   G  P+  +Y +LL A  R    +  + +  +
Sbjct: 122 LSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQ 181

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           +K KG    +  YNT++      G T EA E+ ++M  S+  QPD  T++++ +      
Sbjct: 182 LKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEM-ISKGLQPDIITYTTIASGLCRED 240

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           K+ EA   F ++ + G  P + +  +++    K + T + +   + +   G  P++
Sbjct: 241 KIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNE 296



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 1/190 (0%)

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           + + +EM+  G  P++ITYN +L+ + +  R        + +   G  PN  +Y  +L+ 
Sbjct: 1   MKLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKG 60

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
              A   ED   +  EM  KG   +V  +N L++     G  + A E+ E +     C P
Sbjct: 61  LFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKY-GCTP 119

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           +S +++ ++     + K+ +A A    M+  G  P++    +L+    +    D  +  L
Sbjct: 120 NSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLL 179

Query: 470 NRLPELGITP 479
           ++L   G +P
Sbjct: 180 HQLKGKGCSP 189


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 116/458 (25%), Positives = 198/458 (43%), Gaps = 49/458 (10%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+AL     K      VI Y   ++      D D A RLF+ M   G+KPD   ++ L  
Sbjct: 516 AMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTD 575

Query: 209 --CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
             C        +A E +  +   G     + Y+++ID + +AGN + A  L +R  +E  
Sbjct: 576 ALCK-----AGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGC 630

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             D   +S L+         +  L + ++M   G+K  +  Y  L+D M R  +    K 
Sbjct: 631 TPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKR 690

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +Y EMT +G  P+  TY   + +Y +    ED   +  +M+ +G+   V  YN L+  C 
Sbjct: 691 MYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCG 750

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS-----EAEAMFN------ 435
            +GY D AF   + M  + +C+P+ WT+  ++     +G ++     +   M+N      
Sbjct: 751 HMGYIDRAFSTLKRMVGA-SCEPNYWTYCLLLKHL-LKGNLAYVRSVDTSGMWNLIELDI 808

Query: 436 ------EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
                  M++ G  P +   +SLI  + KA R ++    L+ +   G++P++     L+ 
Sbjct: 809 TWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIK 868

Query: 490 VMTQTPKEE-----LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 544
               T   E     +  + EC  +   +     +LL+     EGDF+K            
Sbjct: 869 CCCDTKFFEKALSFVSIMSECGFQPQLE---SYRLLVVGLCNEGDFEK------------ 913

Query: 545 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 582
           VK  +C+ L++L  N +  E A K+L  GL    Y DI
Sbjct: 914 VKSLFCD-LLELGYNHD--EVAWKILNDGLLKAGYVDI 948



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 146/351 (41%), Gaps = 39/351 (11%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L     +   S  V  +   +    K   +  A  LFD M   GV P  +T++ +I 
Sbjct: 272 ALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIV 331

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN-VEMAFGLYDRARNEKWR 267
                   N A++  E M   GC PD  TY+++I  YG      E A  L + A  E + 
Sbjct: 332 GYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLI--YGLCDQKTEEAEELLNNAVKEGFT 389

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                F+ LI  Y  A  FD  L +  +M +   K ++  +  L++++ +  R  + K +
Sbjct: 390 PTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKEL 449

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
             E++ NGL PN  TY S++  Y ++                                  
Sbjct: 450 LNEISANGLVPNVITYTSIIDGYCKS---------------------------------- 475

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G  D A E+ + M   + CQP++WT++S++       K+ +A A+  +M + G  PN+ 
Sbjct: 476 -GKVDIALEVLK-MMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVI 533

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
             T+L+Q        D+  R    + + G+ PD+     L + + +  + E
Sbjct: 534 TYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAE 584



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 151/332 (45%), Gaps = 5/332 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +  + K   ++ A ++ + M   G  PD+ T++TLI     +    +A E   
Sbjct: 323 VMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIY-GLCDQKTEEAEELLN 381

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
                G  P  +T++++I+ Y  A   + A  + ++  + K ++D   F  LI       
Sbjct: 382 NAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKD 441

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  +  E+ A G+ PN+ITY +++D   ++ +      + K M  +G  PN  TY 
Sbjct: 442 RLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYN 501

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL+    + +     +++  +M++ G+  +V  Y TLL    D    D AF +FE M+ +
Sbjct: 502 SLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQN 561

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              +PD   + +++T   C  K   AE  ++ ++  G        T+LI  + KA  TD 
Sbjct: 562 -GLKPDEHAY-AVLTDALC--KAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDF 617

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
               + R+ + G TPD      LL+ + +  +
Sbjct: 618 AATLIERMIDEGCTPDSYTYSVLLHALCKQKR 649



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 140/320 (43%), Gaps = 8/320 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + YN  +K + K  DL  A R F  +L+ G++P+  T + L+          KA   F
Sbjct: 182 DTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLF 241

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             MP  GC  +  +Y+ +I     A  V  A  L+   + +    +  AF+ LI     +
Sbjct: 242 LMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKS 301

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLL---DTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           G       +++ M   GV P+++TYN ++     +GR     ++K +   M  NG  P+ 
Sbjct: 302 GRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKEL---MEKNGCHPDD 358

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY +L+      +  E    +   +KE      VT  N +   C    + D+A  +   
Sbjct: 359 WTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKF-DDALRMKNK 417

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M SS+ C+ D   F  +I     + ++ EA+ + NE+   G  PN+   TS+I  Y K+ 
Sbjct: 418 MMSSK-CKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSG 476

Query: 461 RTDDVVRALNRLPELGITPD 480
           + D  +  L  +   G  P+
Sbjct: 477 KVDIALEVLKMMERDGCQPN 496



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 140/329 (42%), Gaps = 37/329 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  ++   +    +   R++  ++  G+ PD VT++T+I           A   F  + 
Sbjct: 151 YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLL 210

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G +P+  T ++++  Y R G +          R   W                     
Sbjct: 211 EGGLEPETFTCNALVLGYCRTGEL----------RKACW--------------------- 239

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++  M  +G + N  +Y  L+  +  AK   +   ++  M  +G SPN   +  L+
Sbjct: 240 ----LFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLI 295

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               ++    D   ++  M + G+  SV  YN ++   + +G  ++A +I E M+ +  C
Sbjct: 296 SGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKN-GC 354

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD WT++++I    C  K  EAE + N  ++ GF P +   T+LI  Y  A++ DD +R
Sbjct: 355 HPDDWTYNTLI-YGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALR 413

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK 496
             N++       D +  G L+N + +  +
Sbjct: 414 MKNKMMSSKCKLDLQVFGKLINSLIKKDR 442


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 156/324 (48%), Gaps = 4/324 (1%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  +    K  +    E ++ +M+ R + P+ +TF+T+I+        NKA +  + M  
Sbjct: 199 NPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKV 258

Query: 229 FGCDPDALTYSSMIDAY---GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +G  P+ +TY+++ID Y   GR G +  A  +       K   +   F+ LI  +    N
Sbjct: 259 WGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDEN 318

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               L V+EEM++ G+KP ++TYN+L++ +    +  + K +  EM  + L PN  TY +
Sbjct: 319 LSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNA 378

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  Y + +  E+   ++  + ++G+  +V  +NTLL      G  +EAF + + +   +
Sbjct: 379 LINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAF-LLQKVMLEK 437

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              P++ T++ +I      GK+ E + + NEM   G + +      LI  + + +     
Sbjct: 438 GFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKA 497

Query: 466 VRALNRLPELGITPDDRFCGCLLN 489
            R ++ + + G+ P       LLN
Sbjct: 498 ARLIDEMLDKGLKPSHLTYNILLN 521



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 136/286 (47%), Gaps = 1/286 (0%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K S   + +NV +  F K  +L  A ++F++M  +G+KP  VT+++L++        N+A
Sbjct: 298 KVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEA 357

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
               + M S    P+ +TY+++I+ Y +   +E A  L+D    +    +   F+TL+  
Sbjct: 358 KVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHG 417

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           Y   G  +    + + M   G  PN  TYN L+    R  +  +VK +  EM   G+  +
Sbjct: 418 YCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKAD 477

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY  L+ A+   +  +    +  EM +KG++ S   YN LL      G    A  + +
Sbjct: 478 TVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRK 537

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            M+  E    +  T++ +I     +GK+ +A  + NEMLE G  PN
Sbjct: 538 QME-KEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPN 582



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 140/298 (46%), Gaps = 1/298 (0%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           KA+ +  +M++  V P++VTF+ LI     +   + A++ FE M S G  P  +TY+S++
Sbjct: 286 KADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLV 345

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
           +     G +  A  L D   +   + +   ++ LI  Y      +    +++ +   G+ 
Sbjct: 346 NGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLT 405

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           PN+IT+N LL    +  +  +   + K M + G  PN +TY  L+  + R    E+  ++
Sbjct: 406 PNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNL 465

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
             EM+ +G++     YN L++   +     +A  + ++M   +  +P   T++ ++    
Sbjct: 466 LNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEM-LDKGLKPSHLTYNILLNGYC 524

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             G +  A  +  +M + G   N+     LIQ Y +  + +D    LN + E G+ P+
Sbjct: 525 MEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPN 582



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 122/251 (48%), Gaps = 6/251 (2%)

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           +++    ++ AY       +    + RA + ++++   + + L+        F G   VY
Sbjct: 159 NSIIADMLVLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVY 218

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY--- 350
           +EM    + PN+IT+N +++ + +  +  +   +  +M   G  PN  TY +L+  Y   
Sbjct: 219 KEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKM 278

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQP 409
           GR        ++ +EM E  +  +   +N L+   C D   +  A ++FE+M+ S+  +P
Sbjct: 279 GRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLS-AALKVFEEMQ-SQGLKP 336

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
              T++S++      GK++EA+ + +EML +  +PN+    +LI  Y K +  ++     
Sbjct: 337 TVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELF 396

Query: 470 NRLPELGITPD 480
           + + + G+TP+
Sbjct: 397 DNIGKQGLTPN 407


>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
          Length = 551

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 159/333 (47%), Gaps = 3/333 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERM 226
           Y + +      RD+ K E +F++M  + +  D   +S++I+   R  N+  +A E F+  
Sbjct: 216 YTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNV-RRASEVFDEC 274

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G +P+  TY ++I+ + + G +E A  L    +     I+   F+T+I  Y      
Sbjct: 275 VGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMV 334

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D  L +   M+ +G++ ++ TYN L   + RA R  + K + + M + G+ PN  +Y +L
Sbjct: 335 DKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTL 394

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  +       +   ++REM   G + S+  YN ++      G   EA E F+     + 
Sbjct: 395 ISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREA-ERFKKEMEKKG 453

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             PD +++++++      GKV  A  +F EM + G +PNL   T+LI    K  R+++  
Sbjct: 454 LVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAF 513

Query: 467 RALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 499
           +  + +   G+TPDD     L+  +    K+ +
Sbjct: 514 QLYDNMLGDGLTPDDALYSALVGSLHTDKKQNV 546



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 149/335 (44%), Gaps = 1/335 (0%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           DTAA  L         S   +  +V +  + K   +  A +L D+M   GVK + + +++
Sbjct: 124 DTAADLLKQAATSCPDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNS 183

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           L+         ++  E  + M + G +P   TY+ ++D    A ++     +++  +++ 
Sbjct: 184 LLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKN 243

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
              D   +S++I  Y  AGN      V++E    G++PN  TY  L++   +  +    +
Sbjct: 244 LSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAE 303

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            +  +M   G+  N   + +++  Y R    +  L +   M++ G++L V  YNTL    
Sbjct: 304 MLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGL 363

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
                 DEA  +   M   +  +P+  +++++I+I    G + EA  +F EM   G EP+
Sbjct: 364 RRANRMDEAKNLLRIM-IEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPS 422

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           L     ++  Y K     +  R    + + G+ PD
Sbjct: 423 LVTYNVMMDGYIKKGSIREAERFKKEMEKKGLVPD 457



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A   ++ YNV M  + K   + +AER   +M  +G+ PD  +++ L+    +N   + A+
Sbjct: 419 AEPSLVTYNVMMDGYIKKGSIREAERFKKEMEKKGLVPDIYSYAALVHGHCVNGKVDVAL 478

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
             FE M   G  P+ + Y+++I    + G  E AF LYD    +    D   +S L+
Sbjct: 479 RLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALV 535


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 145/283 (51%), Gaps = 3/283 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +    K +    A+ LF++M++RG+ PD  TF+TLI     +   +KA+  F
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLF 525

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M      PD +TY+++ID + +AG +  A  L+D    +    D  ++ T++  + ++
Sbjct: 526 EAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSS 585

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     LN+ ++M   G++PN++T N L+    R+    +      +M  NG+ P+  +Y
Sbjct: 586 GLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSY 645

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMK 402
            +L+  Y +    E    +  EM+++G+Q ++  YN +L   CA+ G   EA ++   M 
Sbjct: 646 NTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAE-GKMQEAEQVLRKMI 704

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
                 PD  T+SS+I     +  + EA    +EML+ G  P+
Sbjct: 705 EI-GINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 165/352 (46%), Gaps = 44/352 (12%)

Query: 178 CR--DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           CR  ++ +A+ +FD+M  RGV PD V+FS+LI     N    +A+  F  M   G  PD 
Sbjct: 373 CRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDN 432

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDR--ARN------------------------------ 263
           + Y+ +ID + R G +  A  + D   AR                               
Sbjct: 433 VIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNE 492

Query: 264 --EKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
             E+  + D   F+TLI+ Y   GN D  LN++E M    +KP+ +TYN L+D   +A  
Sbjct: 493 MVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGE 552

Query: 321 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 380
             + K ++ +M    + P+  +Y ++L  +  +    + L++  +M EKG++ ++   NT
Sbjct: 553 MGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNT 612

Query: 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
           L+      G   +A+E    M S+    PDS++++++I        + +A  + NEM + 
Sbjct: 613 LIKGYCRSGDMPKAYEYLSKMISN-GIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKR 671

Query: 441 GFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           G + N+     ++  +   GK Q  + V+R   ++ E+GI PD      L+N
Sbjct: 672 GLQFNIITYNLILNGFCAEGKMQEAEQVLR---KMIEIGINPDGATYSSLIN 720



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 152/318 (47%), Gaps = 5/318 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEW 222
           ++ YN  +    K    D+A+ +  +ML  G+ P+  T++TL+   C R N L  +A E 
Sbjct: 327 LLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNIL--EAQEI 384

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F+ M   G  PD +++SS+I    R G++  A   +          D   ++ LI  +  
Sbjct: 385 FDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCR 444

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G     L + +EM A G   +++TYN  L+ + + K       ++ EM + G+ P++ T
Sbjct: 445 NGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYT 504

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           + +L+R Y +    +  L+++  M    ++     YNTL+      G    A E+++DM 
Sbjct: 505 FTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM- 563

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
             ++  PD  ++ +++      G + EA  + ++MLE G  PNL    +LI+ Y ++   
Sbjct: 564 IRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDM 623

Query: 463 DDVVRALNRLPELGITPD 480
                 L+++   GI PD
Sbjct: 624 PKAYEYLSKMISNGIIPD 641



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 159/377 (42%), Gaps = 46/377 (12%)

Query: 118 DVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRK 177
           + F +LR  G       C  +L  +       LA   +   ++   E+ +Y + + V   
Sbjct: 208 EAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNAL 267

Query: 178 CRDLDKAERLF--DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           C+D      +F   DM  +GV  D VT++TLI+      L  +A +      S G +P  
Sbjct: 268 CKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGL 327

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           LTY++++  YG         G YDRA+                            +V  E
Sbjct: 328 LTYNAIL--YGLC-----KIGKYDRAK----------------------------DVLIE 352

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M  +G+ PN  TYN LL  + R     + + I+ EM+  G+ P+  +++SL+    R  +
Sbjct: 353 MLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGH 412

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
               L  +REM+  G+     +Y  L+      G   +A ++ ++M  +  C  D  T++
Sbjct: 413 LYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEML-ARGCFMDVVTYN 471

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           + +     +   ++A+ +FNEM+E G  P+ +  T+LI+ Y K    D  +     +   
Sbjct: 472 TFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRT 531

Query: 476 GITPD--------DRFC 484
            + PD        D FC
Sbjct: 532 NLKPDKVTYNTLIDGFC 548



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 92/211 (43%), Gaps = 7/211 (3%)

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           +  L++ Y  A         ++ ++  GV  ++   N LL  + R         IY E+ 
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             G+  N  T   ++ A  + R  E+ +    +M+ KG+   +  YNTL+      G  +
Sbjct: 250 RGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVE 309

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           EAF++     SS   +P   T+++++      GK   A+ +  EML+ G  PN     +L
Sbjct: 310 EAFQLLNSF-SSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTL 368

Query: 453 IQCYGKAQRTDDVVRALNRLPEL---GITPD 480
           +    +  R D+++ A     E+   G+ PD
Sbjct: 369 LV---EICRRDNILEAQEIFDEMSRRGVLPD 396


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 145/308 (47%), Gaps = 3/308 (0%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDP 233
            RK  ++++AE LF DM +RG+  D+V ++TL+    +  N+P  A++  + +      P
Sbjct: 514 LRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMP-AALKVGQELMERNLSP 572

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           DA+ Y+  I+   R G    A       RN     D   ++T+I      GN    L + 
Sbjct: 573 DAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLL 632

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
            EMK   +KPN+ITY  L+  +  A    + K +  EM   G +P   TY  +L+A   +
Sbjct: 633 NEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSGS 692

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
           R     L V+  M   G+   +T+YNTL+ +    G T +A  + ++M       PD+ T
Sbjct: 693 RSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLG-RGIAPDTIT 751

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           F+++I        +  A A + +ML  G  PN+    +L+     A R  +    +  + 
Sbjct: 752 FNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMK 811

Query: 474 ELGITPDD 481
           ++G+ P++
Sbjct: 812 KMGLEPNN 819



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 143/346 (41%), Gaps = 5/346 (1%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           ILN +      A A  Y   K+K S     V+ Y   +  F KC+  + A  ++ DML  
Sbjct: 440 ILNGLVKRGCIAKAAGYM-RKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHE 498

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           GV+ +N    +L++  R N    +A   F+ M   G   D + Y++++D   + GN+  A
Sbjct: 499 GVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAA 558

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             +           D   ++  I      G F    +  +EM+  G++P+  TYN ++  
Sbjct: 559 LKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISA 618

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
             R     +   +  EM  + + PN  TY +L+     A   E    +  EM   G   +
Sbjct: 619 QCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPT 678

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
              Y  +L  C+         E+ E M  +     D   +++++ +  C G   +A  + 
Sbjct: 679 PLTYRRVLQACSGSRSPYVILEVHELMMGA-GLHADITVYNTLVHVLCCHGMTRKATIVL 737

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +EML  G  P+     +LI  + K+   D+      ++   G++P+
Sbjct: 738 DEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPN 783



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 153/335 (45%), Gaps = 7/335 (2%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A AL    +K+  +   + Y   +    K + ++++  L  +M+ RGV  D V ++T++ 
Sbjct: 313 AYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMD 372

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    +A +      S    P+ +TY+ ++DA+ RAGN++ A  +    + E+  +
Sbjct: 373 RLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQML--LQMEEKSV 430

Query: 269 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
            PN   FS+++      G          +MK  G+ PN++TY  L+D   + +       
Sbjct: 431 SPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALD 490

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +Y++M   G+  N     SL+    +    E+  +++++M E+G+ L    Y TL+    
Sbjct: 491 VYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLF 550

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPN 445
             G    A ++ +++    N  PD+  ++  I  C CR GK SEA++   EM   G EP+
Sbjct: 551 KTGNMPAALKVGQELM-ERNLSPDAVVYNVFIN-CLCRLGKFSEAKSFLKEMRNTGLEPD 608

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
                ++I    +   T   ++ LN +    I P+
Sbjct: 609 QATYNTMISAQCREGNTSKALKLLNEMKWSSIKPN 643



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 144/327 (44%), Gaps = 5/327 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ +   +  + K + +++A  L++ M+  GV PD VT S L+     +   ++A   F 
Sbjct: 259 VVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFR 318

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  P+ +TY + ID+  +   V  + GL     +    +D   ++T++   G  G
Sbjct: 319 EMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEG 378

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +   +V     +  + PN +TY  L+D   RA      + +  +M +  +SPN  T++
Sbjct: 379 KIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFS 438

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           S+L    +           R+MK+ G+  +V  Y TL+         + A +++ DM   
Sbjct: 439 SILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDML-H 497

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           E  + +++   S++      G + EAEA+F +M E G   +     +L+    K      
Sbjct: 498 EGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPA 557

Query: 465 VVRALNRLPELGITPD----DRFCGCL 487
            ++    L E  ++PD    + F  CL
Sbjct: 558 ALKVGQELMERNLSPDAVVYNVFINCL 584



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/405 (22%), Positives = 176/405 (43%), Gaps = 49/405 (12%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           + AALA      +      V+ +N  +  + K +D+  A  + + M  +G+  D V ++T
Sbjct: 170 EAAALAEMLVRGRGIDGLGVVGWNALIDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNT 229

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           L++    +   + A E  ERM + G +P  +T++++I  Y +   +E AF LY       
Sbjct: 230 LVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLY------- 282

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
                                       E M   GV P+++T + L+D + R  R  +  
Sbjct: 283 ----------------------------EGMVRSGVLPDVVTLSALVDGLCRDGRFSEAY 314

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            +++EM   G++PN  TY + + +  + +   ++L +  EM  +G+ + + +Y T++   
Sbjct: 315 ALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRL 374

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEP 444
              G  +EA ++      S+N  P+  T++ ++    CR G +  AE M  +M E    P
Sbjct: 375 GKEGKIEEAKDVLRH-ALSDNITPNCVTYTVLVD-AHCRAGNIDGAEQMLLQMEEKSVSP 432

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG---- 500
           N+   +S++    K          + ++ + GI P+    G L++   +   +E      
Sbjct: 433 NVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVY 492

Query: 501 --KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543
              L E VE +N  +  +V  L +  +IE     EA  LF  + +
Sbjct: 493 RDMLHEGVEANNFIVDSLVNGLRKNGNIE-----EAEALFKDMGE 532



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 148/328 (45%), Gaps = 1/328 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + ++YNV +    +     +A+    +M + G++PD  T++T+IS        +KA++
Sbjct: 571 SPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALK 630

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
               M      P+ +TY++++     AG VE A  L +   +  +   P  +  +++   
Sbjct: 631 LLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACS 690

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            + +    L V+E M   G+  ++  YN L+  +       +   +  EM   G++P+  
Sbjct: 691 GSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTI 750

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+ +L+  + ++ + ++  + Y +M  +G+  ++  +NTLL      G   EA  +  +M
Sbjct: 751 TFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEM 810

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K     +P++ T+  ++T  + +    EA  ++ EM+  GF P      SLI  + KA  
Sbjct: 811 KKM-GLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDFAKAGM 869

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
            +      + +   G+         LLN
Sbjct: 870 MNQAKELFSEMKRRGVLHTSSTYDILLN 897



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 133/308 (43%), Gaps = 1/308 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I Y   +    +   ++KA+ L ++M   G  P  +T+  ++     +  P   +E  E
Sbjct: 644 LITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSGSRSPYVILEVHE 703

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G   D   Y++++      G    A  + D         D   F+ LI  +  + 
Sbjct: 704 LMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSS 763

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           + D     Y +M   G+ PN+ T+N LL  +  A R  +  T+  EM   GL PN  TY 
Sbjct: 764 HLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYD 823

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L+  Y +     + L +Y EM  KG     + YN+L++  A  G  ++A E+F +MK  
Sbjct: 824 ILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRR 883

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
                 S T+  ++   S     +E   +  +M E GF+P+   ++S+ + + K   T +
Sbjct: 884 GVLHTSS-TYDILLNGWSKLRNGTEVRILLKDMKELGFKPSKGTISSMSRAFSKPGMTWE 942

Query: 465 VVRALNRL 472
             R L  L
Sbjct: 943 ARRLLKTL 950



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 153/337 (45%), Gaps = 5/337 (1%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           + + + + YN+ +    +      A  +  +M  RGV  D VT ST +       L  +A
Sbjct: 112 QVAADTVSYNIFLAGLSEQGHGRLAPPVLSEMCKRGVPWDGVTMSTALVGLSRTGLVGEA 171

Query: 220 VEWFERMPSFGCDPDALT---YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
               E M   G   D L    ++++ID Y +  ++  A  + +R   +   +D   ++TL
Sbjct: 172 AALAE-MLVRGRGIDGLGVVGWNALIDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNTL 230

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           +  +  +G+ D    V E MKA GV+P+++T+  L+    + KR  +  T+Y+ M  +G+
Sbjct: 231 VAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGV 290

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            P+  T ++L+    R     +  +++REM + G+  +   Y T +   A V   +E+  
Sbjct: 291 LPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLG 350

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           +  +M  S     D   +++++      GK+ EA+ +    L     PN    T L+  +
Sbjct: 351 LLGEM-VSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAH 409

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
            +A   D   + L ++ E  ++P+      +LN + +
Sbjct: 410 CRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVK 446



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 136/293 (46%), Gaps = 2/293 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y V +    +  ++D AE++   M ++ V P+ VTFS++++         KA  +  +
Sbjct: 400 VTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRK 459

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P+ +TY ++ID + +    E A  +Y    +E    +     +L+      GN
Sbjct: 460 MKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGN 519

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +    ++++M   G+  + + Y  L+D + +         + +E+ +  LSP+   Y  
Sbjct: 520 IEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNV 579

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
            +    R     +  S  +EM+  G++     YNT+++     G T +A ++  +MK S 
Sbjct: 580 FINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWS- 638

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ-CYG 457
           + +P+  T+++++      G V +A+ + NEM  AGF P       ++Q C G
Sbjct: 639 SIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSG 691



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 152/337 (45%), Gaps = 9/337 (2%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AALA+         S +V+ YN  +  F    D D A  + + M   GV+P  VT +TLI
Sbjct: 207 AALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLI 266

Query: 208 S-CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
               +M  +  +A   +E M   G  PD +T S+++D   R G    A+ L+     +K 
Sbjct: 267 GEYCKMKRI-EEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREM--DKI 323

Query: 267 RIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
            + PN   + T I         +  L +  EM + GV  +++ Y  ++D +G+  +  + 
Sbjct: 324 GVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEA 383

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
           K + +    + ++PN  TY  L+ A+ RA   +    +  +M+EK +  +V  ++++L  
Sbjct: 384 KDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNG 443

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFE 443
               G   +A      MK S    P+  T+ ++I     C+G+   A  ++ +ML  G E
Sbjct: 444 LVKRGCIAKAAGYMRKMKDS-GIAPNVVTYGTLIDGFFKCQGQ-EAALDVYRDMLHEGVE 501

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            N F++ SL+    K    ++       + E G+  D
Sbjct: 502 ANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLD 538



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 153/322 (47%), Gaps = 9/322 (2%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAV 220
           + ++++Y   M    K   +++A+ +    L   + P+ VT++ L+    R  N+ + A 
Sbjct: 361 AMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNI-DGAE 419

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIK 278
           +   +M      P+ +T+SS+++   + G +  A G   + ++    I PN   + TLI 
Sbjct: 420 QMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSG--IAPNVVTYGTLID 477

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            +      +  L+VY +M   GV+ N    ++L++ + +     + + ++K+M + GL  
Sbjct: 478 GFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLL 537

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +   YA+L+    +       L V +E+ E+ +     +YN  +     +G   EA    
Sbjct: 538 DHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFL 597

Query: 399 EDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
           ++M+++   +PD  T+++MI+   CR G  S+A  + NEM  +  +PNL   T+L+    
Sbjct: 598 KEMRNT-GLEPDQATYNTMIS-AQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLL 655

Query: 458 KAQRTDDVVRALNRLPELGITP 479
           +A   +     LN +   G TP
Sbjct: 656 EAGVVEKAKYLLNEMASAGFTP 677


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 178/414 (42%), Gaps = 38/414 (9%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YNV +    +  +L+KA +L D M     K    TF+ LI+         KA      
Sbjct: 269 VTYNVVINGLARKGELEKAAQLVDRM-RMSKKASAFTFNPLITGYFARGSVEKAGALQLE 327

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M + G  P  +TY+++I    R+GNVE A   +   R      D   +++LI  Y  AGN
Sbjct: 328 MENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGN 387

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               L ++ ++K  G+ P+++TYN LLD   R     + +   +EM + G  P+ +TY  
Sbjct: 388 LKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTI 447

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS-- 403
           L+    + R        + EM  KG+Q     YNT ++    +G T EAF++ E M S  
Sbjct: 448 LMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRG 507

Query: 404 --------------------------------SENCQPDSWTFSSMITICSCRGKVSEAE 431
                                           S+  QPD  T++ +I     RG++ EA 
Sbjct: 508 ISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREAR 567

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            +F+ ML +G  P+    T  I  Y +            ++ E G+ P++     L++ +
Sbjct: 568 DIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHAL 627

Query: 492 TQTPKEELG--KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543
            +  +  L      E +E+  S   Y   LL++    EG++ +EA  L++ + +
Sbjct: 628 CRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNW-EEAIRLYSEMHQ 680



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 138/287 (48%), Gaps = 4/287 (1%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ ++  R     D    ++ +ML  G++P  VT++TL+         ++A +    M +
Sbjct: 200 NLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEA 259

Query: 229 --FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              GC P  +TY+ +I+   R G +E A  L DR R  K +     F+ LI  Y   G+ 
Sbjct: 260 RPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSK-KASAFTFNPLITGYFARGSV 318

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           +    +  EM+  G+ P ++TYN ++  M R+      +  + EM   GL P+  TY SL
Sbjct: 319 EKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSL 378

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  Y +A   ++ L ++ ++K  G+  SV  YN LL     +G  +EA    ++M   + 
Sbjct: 379 INGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEM-VEQG 437

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           CQPD  T++ ++        ++     F+EML  G +P+ F   + I
Sbjct: 438 CQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRI 484



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 148/321 (46%), Gaps = 9/321 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEW 222
           ++I YN  +  + K  +L +A  LF D+   G+ P  +T++ L+    R+ +L  +A  +
Sbjct: 371 DLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDL-EEARRF 429

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            + M   GC PD  TY+ +++   +  N+ M    +D   ++  + D  A++T I     
Sbjct: 430 KQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELI 489

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G+      + E M + G+  + +TYN  LD + ++        ++ +M  +GL P+  T
Sbjct: 490 LGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCIT 549

Query: 343 YASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
           Y  L+ A+   GR R   D   ++  M   G+  S   Y   +      G    A+  F+
Sbjct: 550 YTCLIHAHCERGRLREARD---IFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQ 606

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
            M   E  +P+  T++ +I      G+ + A   F+EMLE G  PN +  T LI    K 
Sbjct: 607 KML-EEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKE 665

Query: 460 QRTDDVVRALNRLPELGITPD 480
              ++ +R  + + + GI PD
Sbjct: 666 GNWEEAIRLYSEMHQHGIHPD 686



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 142/320 (44%), Gaps = 9/320 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           V+ YN  +    +  +++ A   F +M   G+ PD +T+++LI+   +  NL  +A+  F
Sbjct: 337 VVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNL-KEALWLF 395

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             +   G  P  LTY+ ++D Y R G++E A         +  + D + ++ L+      
Sbjct: 396 GDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKV 455

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDT---MGRAKRPWQVKTIYKEMTDNGLSPNW 340
            N       ++EM + G++P+   YN  +     +G     +Q+  +   M   G+S + 
Sbjct: 456 RNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEV---MISRGISSDT 512

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY   L    ++   +D   ++ +M   G+Q     Y  L+    + G   EA +IF+ 
Sbjct: 513 VTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDG 572

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M  S    P + T++  I     RG +  A   F +MLE G  PN      LI    +  
Sbjct: 573 MLVS-GLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMG 631

Query: 461 RTDDVVRALNRLPELGITPD 480
           RT+   +  + + E G++P+
Sbjct: 632 RTNLAYQHFHEMLERGLSPN 651



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 118/255 (46%), Gaps = 1/255 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y + M   RK R+L      FD+ML +G++PD   ++T IS   +    ++A +  
Sbjct: 441 DVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLT 500

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M S G   D +TY+  +D   ++GN++ A+ L+ +  ++  + D   ++ LI  +   
Sbjct: 501 EVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCER 560

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G      ++++ M   G+ P+ +TY   +    R    +     +++M + G+ PN  TY
Sbjct: 561 GRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTY 620

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             L+ A  R          + EM E+G+  +   Y  L+      G  +EA  ++ +M  
Sbjct: 621 NVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMH- 679

Query: 404 SENCQPDSWTFSSMI 418
                PD  T +++ 
Sbjct: 680 QHGIHPDHCTHNALF 694



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 92/202 (45%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A  LT        S + + YN+ +    K  +L  A  L+  M+  G++PD +T++ LI 
Sbjct: 496 AFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIH 555

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    +A + F+ M   G  P A+TY+  I AY R GN+  A+G + +   E  R 
Sbjct: 556 AHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRP 615

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           +   ++ LI      G  +     + EM   G+ PN  TY  L+D   +     +   +Y
Sbjct: 616 NEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLY 675

Query: 329 KEMTDNGLSPNWNTYASLLRAY 350
            EM  +G+ P+  T+ +L + +
Sbjct: 676 SEMHQHGIHPDHCTHNALFKGF 697



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 4/194 (2%)

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
           CL  + EM   GV P +   N +L  +    R   ++++Y EM   G+ P+  TY +LL 
Sbjct: 180 CLAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLD 239

Query: 349 AYGRARYGEDTLSVYREMKEK--GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           ++ R    +    + REM+ +  G   S   YN ++   A  G  ++A ++ + M+ S+ 
Sbjct: 240 SFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSK- 298

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            +  ++TF+ +IT    RG V +A A+  EM   G  P +    ++I    ++   +   
Sbjct: 299 -KASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAAR 357

Query: 467 RALNRLPELGITPD 480
                +  +G+ PD
Sbjct: 358 MKFVEMRAMGLLPD 371



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 4/196 (2%)

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM--TDNGLSPNWNTY 343
           +D   +VY EM  +G++P+++TYN LLD+  R  R  Q   + +EM     G  P+  TY
Sbjct: 212 WDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTY 271

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++    R    E    +   M+    + S   +N L+      G  ++A  +  +M+ 
Sbjct: 272 NVVINGLARKGELEKAAQLVDRMR-MSKKASAFTFNPLITGYFARGSVEKAGALQLEME- 329

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +E   P   T++++I      G V  A   F EM   G  P+L    SLI  Y KA    
Sbjct: 330 NEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLK 389

Query: 464 DVVRALNRLPELGITP 479
           + +     L   G+ P
Sbjct: 390 EALWLFGDLKRAGLAP 405


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 116/458 (25%), Positives = 198/458 (43%), Gaps = 49/458 (10%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+AL     K      VI Y   ++      D D A RLF+ M   G+KPD   ++ L  
Sbjct: 516 AMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTD 575

Query: 209 --CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
             C        +A E +  +   G     + Y+++ID + +AGN + A  L +R  +E  
Sbjct: 576 ALCK-----AGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGC 630

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             D   +S L+         +  L + ++M   G+K  +  Y  L+D M R  +    K 
Sbjct: 631 TPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKR 690

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +Y EMT +G  P+  TY   + +Y +    ED   +  +M+ +G+   V  YN L+  C 
Sbjct: 691 MYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCG 750

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS-----EAEAMFN------ 435
            +GY D AF   + M  + +C+P+ WT+  ++     +G ++     +   M+N      
Sbjct: 751 HMGYIDRAFSTLKRMVGA-SCEPNYWTYCLLLKHL-LKGNLAYVRSVDTSGMWNLIELDI 808

Query: 436 ------EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
                  M++ G  P +   +SLI  + KA R ++    L+ +   G++P++     L+ 
Sbjct: 809 TWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIK 868

Query: 490 VMTQTPKEE-----LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 544
               T   E     +  + EC  +   +     +LL+     EGDF+K            
Sbjct: 869 CCCDTKFFEKALSFVSIMSECGFQPQLE---SYRLLVVGLCNEGDFEK------------ 913

Query: 545 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 582
           VK  +C+ L++L  N +  E A K+L  GL    Y DI
Sbjct: 914 VKSLFCD-LLELGYNHD--EVAWKILNDGLLKAGYVDI 948



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 146/351 (41%), Gaps = 39/351 (11%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L     +   S  V  +   +    K   +  A  LFD M   GV P  +T++ +I 
Sbjct: 272 ALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIV 331

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN-VEMAFGLYDRARNEKWR 267
                   N A++  E M   GC PD  TY+++I  YG      E A  L + A  E + 
Sbjct: 332 GYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLI--YGLCDQKTEEAEELLNNAVKEGFT 389

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                F+ LI  Y  A  FD  L +  +M +   K ++  +  L++++ +  R  + K +
Sbjct: 390 PTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKEL 449

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
             E++ NGL PN  TY S++  Y ++                                  
Sbjct: 450 LNEISANGLVPNVITYTSIIDGYCKS---------------------------------- 475

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G  D A E+ + M   + CQP++WT++S++       K+ +A A+  +M + G  PN+ 
Sbjct: 476 -GKVDIALEVLK-MMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVI 533

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
             T+L+Q        D+  R    + + G+ PD+     L + + +  + E
Sbjct: 534 TYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAE 584



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 151/332 (45%), Gaps = 5/332 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +  + K   ++ A ++ + M   G  PD+ T++TLI     +    +A E   
Sbjct: 323 VMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIY-GLCDQKTEEAEELLN 381

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
                G  P  +T++++I+ Y  A   + A  + ++  + K ++D   F  LI       
Sbjct: 382 NAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKD 441

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  +  E+ A G+ PN+ITY +++D   ++ +      + K M  +G  PN  TY 
Sbjct: 442 RLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYN 501

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL+    + +     +++  +M++ G+  +V  Y TLL    D    D AF +FE M+ +
Sbjct: 502 SLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQN 561

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              +PD   + +++T   C  K   AE  ++ ++  G        T+LI  + KA  TD 
Sbjct: 562 -GLKPDEHAY-AVLTDALC--KAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDF 617

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
               + R+ + G TPD      LL+ + +  +
Sbjct: 618 AATLIERMIDEGCTPDSYTYSVLLHALCKQKR 649



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 140/320 (43%), Gaps = 8/320 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + YN  +K + K  DL  A R F  +L+ G++P+  T + L+          KA   F
Sbjct: 182 DTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLF 241

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             MP  GC  +  +Y+ +I     A  V  A  L+   + +    +  AF+ LI     +
Sbjct: 242 LMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKS 301

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLL---DTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           G       +++ M   GV P+++TYN ++     +GR     ++K +   M  NG  P+ 
Sbjct: 302 GRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKEL---MEKNGCHPDD 358

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY +L+      +  E    +   +KE      VT  N +   C    + D+A  +   
Sbjct: 359 WTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKF-DDALRMKNK 417

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M SS+ C+ D   F  +I     + ++ EA+ + NE+   G  PN+   TS+I  Y K+ 
Sbjct: 418 MMSSK-CKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSG 476

Query: 461 RTDDVVRALNRLPELGITPD 480
           + D  +  L  +   G  P+
Sbjct: 477 KVDIALEVLKMMERDGCQPN 496



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 137/329 (41%), Gaps = 37/329 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  ++   +    +   R++  ++  G+ PD VT++T+I           A  +F  + 
Sbjct: 151 YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLL 210

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G +P+  T ++++  Y R G +  A  L+        + +  +++ LI+    A    
Sbjct: 211 EGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVR 270

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L ++  MK  G  PN+  +  L+  + ++ R    + ++  M  NG+ P+  TY +++
Sbjct: 271 KALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMI 330

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             Y +     D L +   M++ G                                    C
Sbjct: 331 VGYSKLGRMNDALKIKELMEKNG------------------------------------C 354

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD WT++++I    C  K  EAE + N  ++ GF P +   T+LI  Y  A++ DD +R
Sbjct: 355 HPDDWTYNTLI-YGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALR 413

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK 496
             N++       D +  G L+N + +  +
Sbjct: 414 MKNKMMSSKCKLDLQVFGKLINSLIKKDR 442


>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Brachypodium distachyon]
          Length = 746

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 170/383 (44%), Gaps = 9/383 (2%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D  AL      + + A++    +N  +    +  D+  A +LF  M  +G  P   T++ 
Sbjct: 332 DAVALVHEMVVDGVVAAEA---FNPVLGAMLRTGDVTGAAKLFSFMQLKGCAPSAATYNV 388

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           L+    +      A+    RM      P  +TY +++D   R G +E A  + +  R++ 
Sbjct: 389 LLHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVVDGLVRCGRLEDACKVIEEMRSKG 448

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
              +   FS +I  +   G  D    V++ M A G+KPN++ Y+ ++D + R  +  + +
Sbjct: 449 LVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIKPNVVLYSAMIDGLARCGKMTEAE 508

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            +++EM +    PN  TY+S++R Y +       LS + +M   G   +   Y+ L+   
Sbjct: 509 LLFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFWEDMLRIGCTPNAVTYSVLINGL 568

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEP 444
            +VG + +A  +++ M     C PD+  ++SMI      G V     +F +ML  G   P
Sbjct: 569 CNVGRSKDAMMVWKHML-GRGCVPDTIAYTSMIKGFCVSGMVDAGLRLFYDMLARGDTHP 627

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM--TQTPKEELGKL 502
           ++     L+    +A+     +  LN++ +    PD   C   L  +   Q  +E L  L
Sbjct: 628 DVICYNVLLDGLLRAKDLPRAMDLLNQMLDQACDPDTVTCNTFLREIEVGQKGQEFLEGL 687

Query: 503 VE--CVEKSNSKLGYVVKLLLEE 523
           V   C  K N   G V+ ++L +
Sbjct: 688 VVRLCNRKRNKAAGEVLMVMLAK 710



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 140/305 (45%), Gaps = 16/305 (5%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFE--------RMPSFGCDPDALTYSSMIDAYGR 247
           + P  ++F+ L+ C   + +P     + E         +P++   PD  TYS+++ A   
Sbjct: 267 LAPTLLSFNLLLKCVCSSLVPRNHQLYLELALRVVHRSIPAWKLVPDKFTYSTVVSALAD 326

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
           AG V+ A  L      +   +   AF+ ++      G+  G   ++  M+  G  P+  T
Sbjct: 327 AGRVDDAVALVHEMVVDGV-VAAEAFNPVLGAMLRTGDVTGAAKLFSFMQLKGCAPSAAT 385

Query: 308 YNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           YN LL  +   GRAK       + + M    + P   TY +++    R    ED   V  
Sbjct: 386 YNVLLHGLLLCGRAK---AAMGVMRRMERAEVVPGVMTYGAVVDGLVRCGRLEDACKVIE 442

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           EM+ KG+  +  +++ ++     +G  D A  +++ M ++   +P+   +S+MI   +  
Sbjct: 443 EMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAA-GIKPNVVLYSAMIDGLARC 501

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
           GK++EAE +F EM+EA   PN+   +S+++ Y +   +   +     +  +G TP+    
Sbjct: 502 GKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFWEDMLRIGCTPNAVTY 561

Query: 485 GCLLN 489
             L+N
Sbjct: 562 SVLIN 566


>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
          Length = 579

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 163/342 (47%), Gaps = 5/342 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +++  K     K    FD+M+ +G   + + F+T+I     N + +K +    +M 
Sbjct: 201 YTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMV 260

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C P+  TYS  +D     G +     + D       R   + +S L+K    +G+  
Sbjct: 261 ENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNR---SIYSYLVKSLCKSGHAS 317

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              NV+  M     K +   + ++L+ +  A++  +   +   M + G+  +   Y  + 
Sbjct: 318 EAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVF 377

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A G+ +      +++ +MK  G+   V  YN +++    VG  D+A E+FE M++S +C
Sbjct: 378 SALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEAS-SC 436

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD  T++S+I      G + EA  +F EM E G++P++F  + LI+C+GK+ + +    
Sbjct: 437 KPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACS 496

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 508
             + +   G TP+      LL+ + +  K EE  KL E +++
Sbjct: 497 LFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQ 538



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 103/191 (53%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V +YN+      K + +     LFD M   G+ PD  T++ +IS      L +KA E F
Sbjct: 369 DVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELF 428

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M +  C PD +TY+S+I+  G+ G+++ A  L+   + + +  D   +S LI+ +G +
Sbjct: 429 EVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKS 488

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              +   ++++EM + G  PN++TYN LLD + R  +  +   +Y+ M   GL P+  TY
Sbjct: 489 NKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITY 548

Query: 344 ASLLRAYGRAR 354
           + L R   R++
Sbjct: 549 SILERLESRSQ 559



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 139/313 (44%), Gaps = 19/313 (6%)

Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFT--------NKLKASKEVI------ 166
           +++  LG + +    + +L+ M   D      TY           +L    EV+      
Sbjct: 238 TIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRF 297

Query: 167 ----LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
               +Y+  +K   K     +A  +F  M +   K D   F +++          +A++ 
Sbjct: 298 MNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDL 357

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
              MP  G   D   Y+ +  A G+   V     L+D+ +      D   ++ +I  YG 
Sbjct: 358 LHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGR 417

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G  D    ++E M+A   KP+++TYN+L++ +G+     +   ++KEM + G  P+  T
Sbjct: 418 VGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFT 477

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y+ L+  +G++   E   S++ EM  +G   ++  YN LL      G T+EA +++E MK
Sbjct: 478 YSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMK 537

Query: 403 SSENCQPDSWTFS 415
             +   PDS T+S
Sbjct: 538 -QQGLIPDSITYS 549



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 130/289 (44%), Gaps = 10/289 (3%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G++    T+  ++     +   +K  + +E M   G   D   Y+ ++DA  +AG V+ A
Sbjct: 123 GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQA 182

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
           F +++  + +    D   ++ LI++ G AG     L+ ++EM + G   N+I +N +++ 
Sbjct: 183 FQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEA 242

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYA---SLLRAYGRARYGEDTLSVYREMKEKGM 371
           +G+ K   +V  +  +M +N   PN  TY+    +L   G+     + L +      +  
Sbjct: 243 LGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNR-- 300

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
               ++Y+ L+      G+  EA  +F  M +S   + D   F SM+ +     K  EA 
Sbjct: 301 ----SIYSYLVKSLCKSGHASEAHNVFCRMWNSHE-KGDRDAFVSMLEVLCNAEKTLEAI 355

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            + + M E G   ++ +   +    GK ++   +    +++   GI PD
Sbjct: 356 DLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPD 404



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 99/199 (49%), Gaps = 8/199 (4%)

Query: 187 LFDDMLDRGVKPD----NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           L   M ++G+  D    N+ FS L    +++ + N     F++M + G  PD  TY+ MI
Sbjct: 357 LLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISN----LFDKMKTNGIIPDVFTYNIMI 412

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            +YGR G V+ A  L++       + D   +++LI   G  G+ D    +++EM+  G  
Sbjct: 413 SSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYD 472

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P++ TY+ L++  G++ +     +++ EM   G +PN  TY  LL    R    E+   +
Sbjct: 473 PDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKL 532

Query: 363 YREMKEKGMQLSVTLYNTL 381
           Y  MK++G+      Y+ L
Sbjct: 533 YETMKQQGLIPDSITYSIL 551



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 130/308 (42%), Gaps = 9/308 (2%)

Query: 174 VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDP 233
           +FR      +A RL  DM   GV  +    ST+     M     +     E    +G   
Sbjct: 70  LFRTRAGPSEALRLVADMERDGVAGN---ISTINLLVGMGGGGVEMERCLELASKWGLRL 126

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
              TY  ++ A+ R+  V   F +Y+  R + +++D  A++ L+     AG  D    V+
Sbjct: 127 SGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVF 186

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
           E+MK     P+  TY  L+   G+A R  +  + + EM   G   N   + +++ A G+ 
Sbjct: 187 EDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKN 246

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
           +  +  + V  +M E   Q +   Y+  L + A  G      E+ +      N    S+ 
Sbjct: 247 KMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYL 306

Query: 414 FSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
             S+     C+ G  SEA  +F  M  +  + +     S+++    A++T + +  L+ +
Sbjct: 307 VKSL-----CKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMM 361

Query: 473 PELGITPD 480
           PE GI  D
Sbjct: 362 PEKGIVTD 369


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 165/352 (46%), Gaps = 8/352 (2%)

Query: 131 LEQDCVII---LNNMTNPDTAALALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAE 185
           +E  C+++   LN +   D    A+  F   L+  +  +   +N+ ++        +KA 
Sbjct: 167 VEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKAL 226

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG-CDPDALTYSSMIDA 244
            L   M   G +PD VT++TLI     +N  NKA E F+ + S   C PD +TY+SMI  
Sbjct: 227 ELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISG 286

Query: 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
           Y +AG +  A  L D             F+ L+  Y  AG       +  +M + G  P+
Sbjct: 287 YCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPD 346

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           ++T+ +L+D   R  +  Q   +++EM   G+ PN  TY+ L+ A            +  
Sbjct: 347 VVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLG 406

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           ++  K +     +YN ++      G  +EA  I E+M+  + C+PD  TF+ +I     +
Sbjct: 407 QLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKK-CKPDKITFTILIIGHCMK 465

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           G++ EA ++F++M+  G  P+   ++SL+ C  KA    +    LN++   G
Sbjct: 466 GRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYH-LNQIARKG 516



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 160/395 (40%), Gaps = 19/395 (4%)

Query: 102 LVKLAADLDSCSATEDDV-FSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLK 160
           LVK+ + L      + D+ F  L    + F+  + V  L+N  NP        +   KL 
Sbjct: 41  LVKIVSTLFVYRVPDSDLCFCYLSKNLNPFISFEVVKKLDN--NPHIGFRFWEFSRFKLN 98

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKA 219
                  YN+  +   K    D A ++F+ M   GV P+N     L+S  A    L    
Sbjct: 99  IRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFAT 158

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
               +     GC    +  +S+++   +   VE A  L+D     +   D   F+ LI+ 
Sbjct: 159 ALLLQSFEVEGC---CMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRG 215

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SP 338
               G  +  L +   M   G +P+++TYN L+    ++    +   ++K++    + SP
Sbjct: 216 LCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSP 275

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  TY S++  Y +A    +  S+  +M   G+  +   +N L+   A  G    A EI 
Sbjct: 276 DVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIR 335

Query: 399 EDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
             M S   C PD  TF+S+I    CR G+VS+   ++ EM   G  PN F  + LI    
Sbjct: 336 GKMISF-GCFPDVVTFTSLID-GYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALC 393

Query: 458 KAQRTDDVVRALNRLPELGITPD--------DRFC 484
              R       L +L    I P         D FC
Sbjct: 394 NENRLLKARELLGQLASKDIIPQPFMYNPVIDGFC 428



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 86/178 (48%), Gaps = 3/178 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   +  + +   + +  RL+++M  RG+ P+  T+S LI+     N   KA E  
Sbjct: 346 DVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELL 405

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            ++ S    P    Y+ +ID + +AG V  A  + +    +K + D   F+ LI  +   
Sbjct: 406 GQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMK 465

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSP 338
           G     ++++ +M AIG  P+ IT ++LL  +   G AK  + +  I ++   N + P
Sbjct: 466 GRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIARKGQSNNVVP 523


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 165/352 (46%), Gaps = 8/352 (2%)

Query: 131 LEQDCVII---LNNMTNPDTAALALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAE 185
           +E  C+++   LN +   D    A+  F   L+  +  +   +N+ ++        +KA 
Sbjct: 167 VEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKAL 226

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG-CDPDALTYSSMIDA 244
            L   M   G +PD VT++TLI     +N  NKA E F+ + S   C PD +TY+SMI  
Sbjct: 227 ELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISG 286

Query: 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
           Y +AG +  A  L D             F+ L+  Y  AG       +  +M + G  P+
Sbjct: 287 YCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPD 346

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           ++T+ +L+D   R  +  Q   +++EM   G+ PN  TY+ L+ A            +  
Sbjct: 347 VVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLG 406

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           ++  K +     +YN ++      G  +EA  I E+M+  + C+PD  TF+ +I     +
Sbjct: 407 QLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKK-CKPDKITFTILIIGHCMK 465

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           G++ EA ++F++M+  G  P+   ++SL+ C  KA    +    LN++   G
Sbjct: 466 GRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYH-LNQIARKG 516



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 160/395 (40%), Gaps = 19/395 (4%)

Query: 102 LVKLAADLDSCSATEDDV-FSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLK 160
           LVK+ + L      + D+ F  L    + F+  + V  L+N  NP        +   KL 
Sbjct: 41  LVKIVSTLFVYRVPDSDLCFCYLSKNLNPFISFEVVKKLDN--NPHIGFRFWEFSRFKLN 98

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKA 219
                  YN+  +   K    D A ++F+ M   GV P+N     L+S  A    L    
Sbjct: 99  IRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFAT 158

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
               +     GC    +  +S+++   +   VE A  L+D     +   D   F+ LI+ 
Sbjct: 159 ALLLQSFEVEGC---CMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRG 215

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SP 338
               G  +  L +   M   G +P+++TYN L+    ++    +   ++K++    + SP
Sbjct: 216 LCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSP 275

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           +  TY S++  Y +A    +  S+  +M   G+  +   +N L+   A  G    A EI 
Sbjct: 276 DVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIR 335

Query: 399 EDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
             M S   C PD  TF+S+I    CR G+VS+   ++ EM   G  PN F  + LI    
Sbjct: 336 GKMISF-GCFPDVVTFTSLID-GYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALC 393

Query: 458 KAQRTDDVVRALNRLPELGITPD--------DRFC 484
              R       L +L    I P         D FC
Sbjct: 394 NENRLLKARELLGQLASKDIIPQPFMYNPVIDGFC 428



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 86/178 (48%), Gaps = 3/178 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   +  + +   + +  RL+++M  RG+ P+  T+S LI+     N   KA E  
Sbjct: 346 DVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELL 405

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            ++ S    P    Y+ +ID + +AG V  A  + +    +K + D   F+ LI  +   
Sbjct: 406 GQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMK 465

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSP 338
           G     ++++ +M AIG  P+ IT ++LL  +   G AK  + +  I ++   N + P
Sbjct: 466 GRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIARKGQSNNVVP 523


>gi|255661198|gb|ACU25768.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 426

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 151/305 (49%), Gaps = 14/305 (4%)

Query: 185 ERLFDDML--------DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           E LFDD L        DR V+ D V +S LI  +R     +KA+  F R+   G  PD +
Sbjct: 22  EGLFDDALSWLQKMEQDR-VRGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGIMPDLV 80

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            Y+SMI+ +G+A     A  L    R      D  +++ L+ +Y     F   L+V+ EM
Sbjct: 81  VYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLTMYVENKKFLEALSVFAEM 140

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           + I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LLR YG A   
Sbjct: 141 REIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVVSYNTLLRVYGDAELF 200

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ S   +P++ T+S+
Sbjct: 201 GEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNAITYST 259

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R L+ L    
Sbjct: 260 IISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLHELK--- 316

Query: 477 ITPDD 481
            TPD+
Sbjct: 317 -TPDN 320



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 172/381 (45%), Gaps = 39/381 (10%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           +   +++LY+  +++ RK  D  KA  +F  +   G+ PD V ++++I+      L  +A
Sbjct: 39  RVRGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGIMPDLVVYNSMINVFGKAKLFREA 98

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
                 M + G  PD ++Y++++  Y        A  ++   R  K  +D    + +I +
Sbjct: 99  RSLISEMRTAGVMPDTVSYTALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDV 158

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           YG  G       ++  M+ +G++PN+++YN LL   G A+   +   +++ M    +  N
Sbjct: 159 YGQLGMAKEADKLFWSMRKLGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQN 218

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY S++  YG+    E   ++ +EM+ +G++ +   Y+T++++   VG  D A  +FE
Sbjct: 219 VVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYSTIISIWGKVGKLDRAAILFE 278

Query: 400 DMKSS------------------------------ENCQPDSWTFSSMITICSCRGKVSE 429
            ++SS                              E   PD+    + I I +  G++ E
Sbjct: 279 KLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLHELKTPDNIPRDTAIHILARAGRIEE 338

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           A  +F + ++AG   ++ V   +I  + K ++  ++V   +++  L    D      +LN
Sbjct: 339 ATWVFRQAIDAGEVKDITVFERMIDLFSKYKKYSNIVEVFDKMRGLEYFSDSYVIALVLN 398

Query: 490 VMTQTPKEELGKLVECVEKSN 510
                     GKL E  EK+N
Sbjct: 399 A--------YGKLHE-FEKAN 410



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 128/283 (45%), Gaps = 36/283 (12%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           PD  TYS++I  +G+ G  + A     +   ++ R D   +S LI+L     ++   +++
Sbjct: 7   PDRYTYSTLITYFGKEGLFDDALSWLQKMEQDRVRGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           +  +K  G+ P+++ YN++++  G+AK   + +++  EM   G+ P+  +Y +LL  Y  
Sbjct: 67  FSRLKRSGIMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLTMYVE 126

Query: 353 ARYGEDTLSVYREMKEK-----------------------------------GMQLSVTL 377
            +   + LSV+ EM+E                                    G++ +V  
Sbjct: 127 NKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVVS 186

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           YNTLL +  D     EA  +F  M+  ++ + +  T++SM+ I     +  +A  +  EM
Sbjct: 187 YNTLLRVYGDAELFGEAIHLFRLMQ-RKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              G EPN    +++I  +GK  + D       +L   GI  D
Sbjct: 246 QSRGIEPNAITYSTIISIWGKVGKLDRAAILFEKLRSSGIEID 288



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 22/252 (8%)

Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD 180
           ++LR  GD  L  + + +   M   D                + V+ YN  M ++ K  +
Sbjct: 189 TLLRVYGDAELFGEAIHLFRLMQRKDI--------------EQNVVTYNSMMMIYGKTLE 234

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
            +KA  L  +M  RG++P+ +T+ST+IS        ++A   FE++ S G + D + Y +
Sbjct: 235 HEKANNLIQEMQSRGIEPNAITYSTIISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQT 294

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           MI AY RAG V  A     R  +E    D     T I +   AG  +    V+ +    G
Sbjct: 295 MIVAYERAGLVSHA----KRLLHELKTPDNIPRDTAIHILARAGRIEEATWVFRQAIDAG 350

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY--ASLLRAYGRARYGED 358
              ++  +  ++D   + K+   +  ++ +M   GL    ++Y  A +L AYG+    E 
Sbjct: 351 EVKDITVFERMIDLFSKYKKYSNIVEVFDKM--RGLEYFSDSYVIALVLNAYGKLHEFEK 408

Query: 359 TLSVYREMKEKG 370
              VY EM+++G
Sbjct: 409 ANDVYTEMQDEG 420



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 130/278 (46%), Gaps = 15/278 (5%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   G++P+ V+++TL+       L  +A+  F  M  
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    ++    I+PNA  +ST+I ++G  G  
Sbjct: 213 KDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG--IEPNAITYSTIISIWGKVGKL 270

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    ++E++++ G++ + + Y  ++    RA      K +  E+      P       L
Sbjct: 271 DRAAILFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLHELKTPDNIPRDTAIHIL 330

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
            RA GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+  E 
Sbjct: 331 ARA-GRI---EEATWVFRQAIDAGEVKDITVFERMIDLFSKYKKYSNIVEVFDKMRGLEY 386

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEA---MFNEMLEAG 441
              DS+  +    + +  GK+ E E    ++ EM + G
Sbjct: 387 F-SDSYVIA---LVLNAYGKLHEFEKANDVYTEMQDEG 420


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 158/326 (48%), Gaps = 3/326 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST-LISCARMNNLPNKAVEWF 223
           V  YN  +    K     +A+ + D+ML  G+ PD  T++  L+ C R +N+ + A   F
Sbjct: 324 VFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMD-AERIF 382

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + MPS G  PD +++S++I    + G ++ A   +   +N     D   ++ LI  +   
Sbjct: 383 DEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRN 442

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     L V +EM   G   +++TYN +L+ + + K   +   ++ EMT+ G+ P++ T+
Sbjct: 443 GVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTF 502

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+  Y +       ++++  M ++ ++  V  YNTL+         ++  E++ DM  
Sbjct: 503 TTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM-I 561

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S    P+  ++  +I      G VSEA  +++EM+E GFE  +    ++++ Y +A    
Sbjct: 562 SRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAV 621

Query: 464 DVVRALNRLPELGITPDDRFCGCLLN 489
                L+ +   GI PD      L+N
Sbjct: 622 KADEFLSNMLLKGIVPDGITYNTLIN 647



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 169/396 (42%), Gaps = 71/396 (17%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K+  S +   YN+ +    +  ++  AER+FD+M  +GV PD V+FS LI     N   +
Sbjct: 352 KIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 411

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID-------- 269
           +A+++F  M + G  PD + Y+ +I  + R G +  A  + D    +   +D        
Sbjct: 412 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTIL 471

Query: 270 -------------------------PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
                                    P+   F+TLI  Y   GN +  + ++E M    +K
Sbjct: 472 NGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLK 531

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P+++TYN L+D   +     +V  ++ +M    + PN  +Y  L+  Y       +   +
Sbjct: 532 PDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRL 591

Query: 363 YREMKEKGMQLSVTLYNTLL--------AMCAD---------------VGYT-------- 391
           + EM EKG + ++   NT++        A+ AD               + Y         
Sbjct: 592 WDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIK 651

Query: 392 ----DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
               D AF +   M++S    PD  T++ ++   S +G++ EAE +  +M+E G  P+  
Sbjct: 652 EENMDRAFALVNKMENS-GLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRS 710

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
             TSLI  +       +  R  + + + G  PDD+F
Sbjct: 711 TYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDDKF 746



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/425 (23%), Positives = 185/425 (43%), Gaps = 26/425 (6%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCL 126
           +G  GS+P  +  +     +A KL+E                   C A     F VL+  
Sbjct: 177 YGNCGSNPLVFDLLVRTYVQARKLRE------------------GCEA-----FRVLKSK 213

Query: 127 GDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD--LDKA 184
           G       C  +L  +       LA   +   +++  +V +Y + + +   C++  ++  
Sbjct: 214 GLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENT 273

Query: 185 ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244
           +    DM ++GV PD VT++TLI+      L  +A E  + M   G  P   TY+++I+ 
Sbjct: 274 KSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIING 333

Query: 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
             + G    A G+ D         D   ++ L+       N      +++EM + GV P+
Sbjct: 334 LCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPD 393

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           +++++ L+  + +     Q    +++M + GL+P+   Y  L+  + R     + L V  
Sbjct: 394 LVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRD 453

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           EM E+G  L V  YNT+L          EA E+F +M +     PD +TF+++I   S  
Sbjct: 454 EMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEM-TERGVFPDFYTFTTLINGYSKD 512

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
           G +++A  +F  M++   +P++    +LI  + K    + V    N +    I P+    
Sbjct: 513 GNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISY 572

Query: 485 GCLLN 489
           G L+N
Sbjct: 573 GILIN 577



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 112/500 (22%), Positives = 200/500 (40%), Gaps = 60/500 (12%)

Query: 177 KCRD-LDKAERLFDDMLDR--GVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCD 232
           KCR+ L   +R  D +       K    +FS +I    R   LP+        +   G  
Sbjct: 106 KCRENLQLGQRFIDSITSNCPNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVS 165

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGL----YDRARN-----EKWRI--------DPNAFST 275
              +   S++  YG  G+  + F L    Y +AR      E +R+          NA ++
Sbjct: 166 RVEIV-ESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNS 224

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           L+      G  D    +Y+E+   GV+ N+ T N +++ + + ++    K+   +M + G
Sbjct: 225 LLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKG 284

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           + P+  TY +L+ AY R    E+   +   M  KG++  V  YN ++      G    A 
Sbjct: 285 VFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAK 344

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            + ++M       PD+ T++ ++  C     + +AE +F+EM   G  P+L   ++LI  
Sbjct: 345 GVLDEMLKI-GMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGL 403

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLL------NVMTQTPKE-----ELGKLVE 504
             K    D  ++    +   G+ PD+     L+       VM++  K      E G +++
Sbjct: 404 LSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLD 463

Query: 505 CVEKSNSKLGYVVKLLLEEQD----------IEGDFKKEATELFNSISKDVKKAYCNCLI 554
            V  +    G   + +L E D          +  DF    T L N  SKD        L 
Sbjct: 464 VVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYT-FTTLINGYSKDGNMNKAVTLF 522

Query: 555 DLCVNLN----------LLENACKLLELGLTLEVYTDIQSRS--PTQWSLHL---KSLSL 599
           ++ +  N          L++  CK  E+    E++ D+ SR   P   S  +      ++
Sbjct: 523 EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNM 582

Query: 600 GAALTALHIWINDLSKALES 619
           G    A  +W   + K  E+
Sbjct: 583 GCVSEAFRLWDEMVEKGFEA 602


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 153/326 (46%), Gaps = 1/326 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  YN  +    K  +   A  L   M + G +P+ VT+STLI     + L N+A++ F
Sbjct: 197 DVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIF 256

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M + G  PD  TY+S+I    +    + A  L +   +     D   F+ L+  +   
Sbjct: 257 SYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKE 316

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     L V + M  +GV+PN++TY++L+          + + ++  M   G  PN  +Y
Sbjct: 317 GKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSY 376

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             L+  Y +A+  ++ + ++ EM  +G+  +   YNTL+     +G   EA ++F +M +
Sbjct: 377 NILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCT 436

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           + N  PD +T+S ++     +G + +A  +F  M     +PNL + T L+    K+    
Sbjct: 437 NGNL-PDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHK 495

Query: 464 DVVRALNRLPELGITPDDRFCGCLLN 489
           D  +  + L   G+ P  +    ++N
Sbjct: 496 DARKLFSELFVQGLQPHVQLYTTIIN 521



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 156/343 (45%), Gaps = 41/343 (11%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  +   ++ M  F + + +D    +   ++  G++P  VTF+TLI+         +AVE
Sbjct: 125 SPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVE 184

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F+ M + GC PD  TY+++I+   + G    A GL                        
Sbjct: 185 LFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGL------------------------ 220

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                       ++M+  G +PNM+TY+ L+D++ R +   +   I+  M   G+SP+  
Sbjct: 221 -----------LKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIF 269

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY SL++   +    ++  ++  EM    +   +  +N L+      G   EA  + + M
Sbjct: 270 TYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTM 329

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
            +    +P+  T+SS++   S    V EA  +F+ M+  G +PN+F    LI  Y KA+R
Sbjct: 330 -TEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKR 388

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVE 504
            D+ ++  N +   G+TP++     L++   Q     LGKL E
Sbjct: 389 IDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQ-----LGKLRE 426



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 154/328 (46%), Gaps = 5/328 (1%)

Query: 118 DVFSVLRCLG---DDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKV 174
           D+FS ++  G   D F     +  L   +    A+  L   T+ L    +++ +NV +  
Sbjct: 254 DIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTS-LNIMPDIVTFNVLVDT 312

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F K   + +A  +   M + GV+P+ VT+S+L+    +     +A + F  M + GC P+
Sbjct: 313 FCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPN 372

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
             +Y+ +I+ Y +A  ++ A  L++   ++    +  +++TLI  +   G      +++ 
Sbjct: 373 IFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFR 432

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
            M   G  P++ TY+ LLD   +     +   +++ M    L PN   Y  L+ A  ++ 
Sbjct: 433 NMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSG 492

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             +D   ++ E+  +G+Q  V LY T++      G  DEA E F +M+ ++ C PD  ++
Sbjct: 493 NHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNME-ADGCPPDEISY 551

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGF 442
           + +I         S A  +  EM + GF
Sbjct: 552 NVIIRGLLQHKDESRALLLVGEMRDRGF 579



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 120/258 (46%), Gaps = 12/258 (4%)

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF-DGCLNVYEE 295
           TY    DA     N++ A   ++   + K       F+ L+      G + D  +++ ++
Sbjct: 59  TYQHKNDASSSFRNIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQ 118

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M+ +G+ PN+ T +  ++   + +R     ++  ++   GL P   T+ +L+    +   
Sbjct: 119 MELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGE 178

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
               + ++ +M  KG Q  V  YNT++     +G T  A  + + M+ +  CQP+  T+S
Sbjct: 179 FAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEA-GCQPNMVTYS 237

Query: 416 SMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           ++I ++C  R  V+EA  +F+ M   G  P++F  TSLIQ   K  R  +    LN +  
Sbjct: 238 TLIDSLCRDR-LVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTS 296

Query: 475 LGITPD--------DRFC 484
           L I PD        D FC
Sbjct: 297 LNIMPDIVTFNVLVDTFC 314


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 157/318 (49%), Gaps = 2/318 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I Y V + ++ K  ++ +A++    ML+RG   DN TF+ +IS         +A+ +F R
Sbjct: 206 ISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFRR 265

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +   G +P+ + ++ MI+   + G+++ AF + +    + W+ +    ++LI      G 
Sbjct: 266 LVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGW 325

Query: 286 FDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            +    ++ ++ ++   KPN++TY  ++    R  +  + + +   M + GL PN NTY 
Sbjct: 326 TEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYT 385

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+  + +A   E    +   M  +G   ++  YN ++      G   EA+++ ED    
Sbjct: 386 TLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLED-GFQ 444

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              +PD +T++ +++    +  + +A A+FN+ML+ G +P++   T+LI  + +  R  +
Sbjct: 445 NGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKE 504

Query: 465 VVRALNRLPELGITPDDR 482
                     +GI P ++
Sbjct: 505 SEMFFEEAVRIGIIPTNK 522



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 158/346 (45%), Gaps = 4/346 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR--DLDKAERLFDDMLDR 194
           +I++  +       AL YF   +    E  L N T  +   C+   + +A  + ++M+ +
Sbjct: 245 LIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGK 304

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMP-SFGCDPDALTYSSMIDAYGRAGNVEM 253
           G KP+  T ++LI          KA   F ++  S    P+ LTY++MI  Y R   +  
Sbjct: 305 GWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNR 364

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  L  R + +    + N ++TLI  +  AGNF+   ++   M + G  PN+ TYN +++
Sbjct: 365 AEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVN 424

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
            + +  R  +   + ++   NGL P+  TY  L+  + +       L+++ +M + G+Q 
Sbjct: 425 GLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQP 484

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
            +  Y TL+A+        E+ E+F +        P + T++SMI      G ++ A   
Sbjct: 485 DIHSYTTLIAVFCRENRMKES-EMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKF 543

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           F+ + + G  P+     ++I    K  + D+     + + E G+ P
Sbjct: 544 FHRLSDHGCAPDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVP 589



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 149/348 (42%), Gaps = 49/348 (14%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F +   L +A  +  +M ++G+ P+  T + +I       L   A   FE M   G  PD
Sbjct: 145 FSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRGVQPD 204

Query: 235 ALTYSSMIDAYGRAGNV-----------EMAF-----------------GLYDRA----- 261
           +++Y  M+  Y + GN+           E  F                 G   RA     
Sbjct: 205 SISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFR 264

Query: 262 RNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
           R     ++PN   F+ +I+     G+      + EEM   G KPN+ T+ +L+D  G  K
Sbjct: 265 RLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLID--GLCK 322

Query: 320 RPWQVKT---IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS----VYREMKEKGMQ 372
           + W  K      K +      PN  TY +++  Y R    ED L+    +   MKE+G+ 
Sbjct: 323 KGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCR----EDKLNRAEMLLSRMKEQGLV 378

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +   Y TL+      G  + A+++  ++ SSE   P+  T+++++     RG+V EA  
Sbjct: 379 PNTNTYTTLIDGHCKAGNFERAYDLM-NLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYK 437

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           M  +  + G +P+ F    L+  + K +     +   N++ ++GI PD
Sbjct: 438 MLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPD 485



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 119/275 (43%), Gaps = 35/275 (12%)

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           M++++   G ++ A  +     N+    +    + +IK+    G  +    ++EEM   G
Sbjct: 141 MVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRG 200

Query: 301 VKPNMITY----------NNLLDT----------------------MGR-AKRPWQVKTI 327
           V+P+ I+Y           N+L+                       + R + + +  + +
Sbjct: 201 VQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRAL 260

Query: 328 --YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
             ++ + D GL PN   +  ++    +    +    +  EM  KG + +V  + +L+   
Sbjct: 261 WYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGL 320

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G+T++AF +F  +  SEN +P+  T+++MI+      K++ AE + + M E G  PN
Sbjct: 321 CKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPN 380

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               T+LI  + KA   +     +N +   G +P+
Sbjct: 381 TNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPN 415



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 37/196 (18%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
           F N LK  K    YN+ M    K  ++ +A  LF+ ML  G++PD  +++TLI+     N
Sbjct: 443 FQNGLKPDK--FTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCREN 500

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
              ++  +FE     G  P   TY+SMI  Y R GN+ +A   + R  +           
Sbjct: 501 RMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDH---------- 550

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
                                    G  P+ ITY  ++  + +  +  + +++Y  M + 
Sbjct: 551 -------------------------GCAPDSITYGAIISGLCKQSKRDEARSLYDSMIEK 585

Query: 335 GLSPNWNTYASLLRAY 350
           GL P   T  +L   Y
Sbjct: 586 GLVPCEVTRITLAYEY 601


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 154/306 (50%), Gaps = 4/306 (1%)

Query: 152 LTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           +T   N++  SK   +V++++  +    K   + +A  + D M+ RGV+PD VT++TL+ 
Sbjct: 250 VTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMD 309

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
              + +  ++AV+ F+ M   G  PD ++Y+++I+ Y +   ++ A  L++    ++W  
Sbjct: 310 GHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIP 369

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   ++TL+      G     + ++ EM A G  P+++TY+ LLD++ +     +   + 
Sbjct: 370 DTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALL 429

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           K +  + L+P+   Y  ++    RA   E    ++  +  KG+  SV  YN ++      
Sbjct: 430 KAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKR 489

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G  +EA ++F +M  ++ C PD  T++++        +   A  +  EML  GF  ++  
Sbjct: 490 GLLNEANKLFMEMDGND-CSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVST 548

Query: 449 LTSLIQ 454
            T L++
Sbjct: 549 TTLLVE 554



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 164/367 (44%), Gaps = 3/367 (0%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD--LDKAERLFDDMLDR 194
           I++N+  + +    A +     LK   +      T  +   C +  + +A  LFD M+D 
Sbjct: 96  ILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE 155

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G +P+ VT+ TLI+        + A+     M    C PD + Y+S+ID+  +   V  A
Sbjct: 156 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEA 215

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
           F L+ +   +    D   +++L+        +     +  +M    + P+++ ++ ++D 
Sbjct: 216 FNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDA 275

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           + +  +  +   I   M   G+ P+  TY +L+  +      ++ + V+  M  KG    
Sbjct: 276 LCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPD 335

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           V  Y TL+     +   D+A  +FE+M   E   PD+ T+++++      G++ +A A+F
Sbjct: 336 VISYTTLINGYCKIHKIDKAMYLFEEMCRKEWI-PDTKTYNTLMHGLCHVGRLQDAIALF 394

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           +EM+  G  P+L   + L+    K    ++ +  L  +    + PD +    +++ M + 
Sbjct: 395 HEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRA 454

Query: 495 PKEELGK 501
            + E  +
Sbjct: 455 GELEAAR 461



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 139/301 (46%), Gaps = 3/301 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           LD A   F+ +L     P  V F+ L+ S A+M +  +  +    +M SFG  P+  T +
Sbjct: 37  LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHY-STVLSLSTQMDSFGVPPNVYTLN 95

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +I+++     V  AF +  +      + DP  F+TLI+     G     L+++++M   
Sbjct: 96  ILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE 155

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G +PN++TY  L++ + +         + + M      P+   Y S++ +  + R   + 
Sbjct: 156 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEA 215

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
            +++ +M  +G+   +  Y +L+    ++        +   M +S+   PD   FS+++ 
Sbjct: 216 FNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSK-ILPDVVIFSTVVD 274

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                GKV+EA  + + M++ G EP++   T+L+  +      D+ V+  + +   G  P
Sbjct: 275 ALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAP 334

Query: 480 D 480
           D
Sbjct: 335 D 335



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/405 (20%), Positives = 182/405 (44%), Gaps = 14/405 (3%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           GV P+  T + LI+     N    A     ++   G  PD  T++++I      G +  A
Sbjct: 86  GVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEA 145

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             L+D+  +E ++ +   + TLI      GN    + +   M+    +P+++ Y +++D+
Sbjct: 146 LHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDS 205

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           + + ++  +   ++ +M   G+SP+  TY SL+ A       +   ++  +M    +   
Sbjct: 206 LCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPD 265

Query: 375 VTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           V +++T++ A+C + G   EA EI  DM      +PD  T+++++     + ++ EA  +
Sbjct: 266 VVIFSTVVDALCKE-GKVTEAHEIV-DMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 323

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           F+ M+  GF P++   T+LI  Y K  + D  +     +      PD +    L++ +  
Sbjct: 324 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCH 383

Query: 494 TPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCN 551
             +  + +    E V +          +LL+    +    +EA  L  +I         N
Sbjct: 384 VGRLQDAIALFHEMVARGQMPDLVTYSILLDSL-CKNCHLEEAMALLKAIEAS------N 436

Query: 552 CLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRS--PTQWSLHL 594
              D+ V   +++  C+  EL    ++++++ S+   P+ W+ ++
Sbjct: 437 LNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNI 481



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 155/365 (42%), Gaps = 2/365 (0%)

Query: 147 TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           +  L+L+   +       V   N+ +  F     +  A  +   +L  G +PD  TF+TL
Sbjct: 73  STVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTL 132

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
           I    +     +A+  F++M   G  P+ +TY ++I+   + GN   A  L         
Sbjct: 133 IRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNC 192

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           + D   ++++I             N++ +M   G+ P++ TY +L+  +        V T
Sbjct: 193 QPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTT 252

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +  +M ++ + P+   +++++ A  +     +   +   M ++G++  V  Y TL+    
Sbjct: 253 LLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHC 312

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
                DEA ++F DM   +   PD  +++++I       K+ +A  +F EM    + P+ 
Sbjct: 313 LQSEMDEAVKVF-DMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDT 371

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 505
               +L+       R  D +   + +   G  PD      LL+ + +    EE   L++ 
Sbjct: 372 KTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKA 431

Query: 506 VEKSN 510
           +E SN
Sbjct: 432 IEASN 436



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 103/228 (45%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           + +VI Y   +  + K   +DKA  LF++M  +   PD  T++TL+           A+ 
Sbjct: 333 APDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIA 392

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F  M + G  PD +TYS ++D+  +  ++E A  L           D   ++ +I    
Sbjct: 393 LFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMC 452

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AG  +   +++  + + G+ P++ TYN ++  + +     +   ++ EM  N  SP+  
Sbjct: 453 RAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGC 512

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           TY ++ R + +       + +  EM  +G    V+    L+ M +D G
Sbjct: 513 TYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVEMLSDDG 560



 Score = 42.7 bits (99), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 59/136 (43%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+AL         + ++ +YN+ +    +  +L+ A  LF ++  +G+ P   T++ +I 
Sbjct: 425 AMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIH 484

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 L N+A + F  M    C PD  TY+++   + +      A  L +      +  
Sbjct: 485 GLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSA 544

Query: 269 DPNAFSTLIKLYGTAG 284
           D +  + L+++    G
Sbjct: 545 DVSTTTLLVEMLSDDG 560


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 158/371 (42%), Gaps = 71/371 (19%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A+ +F DML RGV PD ++FS+LI  +  N   ++A+ +F  M + G  PD + Y+ +I
Sbjct: 308 EAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILI 367

Query: 243 DAYGRAGNVEMAFGLYDRARNE-------------------KWRIDPNA----------- 272
           + Y R G +  A  + D+   +                   K   D NA           
Sbjct: 368 NGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVV 427

Query: 273 -----FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                F+TLI  +   GN    L+++  M    +KP+++TYN L+D   +     +   +
Sbjct: 428 PDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANEL 487

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL---------- 377
           + EM    + PN  +YA L+  Y    +  +   ++ EM  KG++ ++            
Sbjct: 488 WNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCR 547

Query: 378 -------------------------YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
                                    YNTL+       Y D+AF +   M++ +  QPD  
Sbjct: 548 SGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMET-KGLQPDVV 606

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           T++ ++     +G++ EAE +  +M+E G +P+    T+LI  Y       +  R  + +
Sbjct: 607 TYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEM 666

Query: 473 PELGITPDDRF 483
            + G  PDD F
Sbjct: 667 LQRGFVPDDDF 677



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 132/282 (46%), Gaps = 1/282 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN  +    K + L  A  LFD+M++RGV PD  TF+TLI          KA+  F
Sbjct: 394 DVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLF 453

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M      PD +TY+ +ID + +   +E A  L++   + K   +  +++ L+  Y   
Sbjct: 454 GIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNL 513

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       +++EM   G+KP ++T N ++    R+    +      +M   G+ P+  TY
Sbjct: 514 GFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITY 573

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+  + +  Y +    +  +M+ KG+Q  V  YN +L      G   EA  I   M  
Sbjct: 574 NTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKM-I 632

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
                PD  T++++I     +  + EA    +EML+ GF P+
Sbjct: 633 ERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPD 674



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 153/322 (47%), Gaps = 1/322 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +    K     +A+ +F++ML  G+ PD  T++TL+  +  NN   +A + F  M 
Sbjct: 258 YNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDML 317

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD +++SS+I    R G+++ A   +   +      D   ++ LI  Y   G   
Sbjct: 318 HRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMS 377

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L + ++M   G   +++ YN +L+ + + K       ++ EM + G+ P++ T+ +L+
Sbjct: 378 EALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLI 437

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             + +       LS++  M +K ++  +  YN L+         ++A E++ +M S +  
Sbjct: 438 HGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRK-I 496

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+  +++ ++      G VSEA  +++EM+  G +P L    ++I+ Y ++        
Sbjct: 497 FPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADE 556

Query: 468 ALNRLPELGITPDDRFCGCLLN 489
            L ++   G+ PD      L+N
Sbjct: 557 FLGKMISEGVGPDSITYNTLIN 578



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 161/374 (43%), Gaps = 3/374 (0%)

Query: 118 DVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRK 177
           D F +LR  G       C  +L  +       LA   +    ++  E+ +Y + + V   
Sbjct: 136 DTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNAL 195

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           C+D  +D  +    DM  +G+  D VT++TLI+      L  +A E    M   G  P  
Sbjct: 196 CKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTL 255

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
            TY+++I+   + G    A G+++   +     D   ++TL+       NF    +++ +
Sbjct: 256 FTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSD 315

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M   GV P++I++++L+    R     Q    +++M  +GL P+   Y  L+  Y R   
Sbjct: 316 MLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGM 375

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
             + L +  +M E+G  L V  YNT+L          +A  +F++M       PD  TF+
Sbjct: 376 MSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEM-VERGVVPDFCTFT 434

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           ++I      G + +A ++F  M +   +P++     LI  + K    +      N +   
Sbjct: 435 TLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISR 494

Query: 476 GITPDDRFCGCLLN 489
            I P+      L+N
Sbjct: 495 KIFPNHISYAILVN 508



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 114/222 (51%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL+L     +     +++ YN+ +  F K  +++KA  L+++M+ R + P++++++ L++
Sbjct: 449 ALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVN 508

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   ++ M   G  P  +T +++I  Y R+G++  A     +  +E    
Sbjct: 509 GYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGP 568

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   ++TLI  +      D    +  +M+  G++P+++TYN +L+   R  R  + + I 
Sbjct: 569 DSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELIL 628

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           ++M + G+ P+ +TY +L+  Y      ++    + EM ++G
Sbjct: 629 RKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRG 670



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 158/369 (42%), Gaps = 22/369 (5%)

Query: 220 VEWFERMPSFG--CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           VE  E + S    C  D L +  +I +Y +A  +      +   R + + +  NA ++L+
Sbjct: 98  VEIVESLISMSSTCGVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLL 157

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
                 G  D    VY E+   G++ N+ T N +++ + +  +   VK    +M   G+ 
Sbjct: 158 GGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIF 217

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
            +  TY +L+ AY R     +   V   M  KG++ ++  YN ++      G    A  +
Sbjct: 218 ADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGV 277

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           F +M S     PD+ T+++++ + SCR     EA+ +F++ML  G  P+L   +SLI   
Sbjct: 278 FNEMLSI-GLSPDTTTYNTLL-VESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVS 335

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL--G 514
            +    D  +     +   G+ PD+     L+N   +      G + E +E  +  L  G
Sbjct: 336 SRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRN-----GMMSEALEIRDKMLEQG 390

Query: 515 YVVKLLLEEQDIEGDFKK----EATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLL 570
             + ++     + G  KK    +A  LF+ + +         + D C    L+   CK  
Sbjct: 391 CALDVVAYNTILNGLCKKKLLADANALFDEMVER------GVVPDFCTFTTLIHGHCKEG 444

Query: 571 ELGLTLEVY 579
            +G  L ++
Sbjct: 445 NMGKALSLF 453


>gi|359477372|ref|XP_002280003.2| PREDICTED: pentatricopeptide repeat-containing protein At3g23020
           [Vitis vinifera]
          Length = 881

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 142/301 (47%), Gaps = 24/301 (7%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI YN+ +++  K R     E L+D+M+ RG+ P N T+ TLI       L  +A+ W +
Sbjct: 196 VIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLIDVYSKGGLTEEALHWLD 255

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMA------FGLYDRARNEKWRIDPNAFSTLIK 278
           RM   G +PD +T   ++  Y +AG  + A      + L    ++E    +P A S +  
Sbjct: 256 RMNKQGMEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLGKTLKDEGKTSEPTATSAV-- 313

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
              +A     CL+ Y             TYN L+DT G+A +  +    +  M   G+ P
Sbjct: 314 --ESASQPHVCLSSY-------------TYNTLIDTYGKAGQLREASDTFAWMLREGIIP 358

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N  T+ +++   G     E+  S+ ++M+E         YN L+++ A     D A   F
Sbjct: 359 NTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRAASYF 418

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           + MK +   +PD  ++ +++   S R  V EAE + +EM E G E + F  ++L + Y +
Sbjct: 419 KKMKEA-RLEPDLVSYRTLLYAFSIRHLVGEAEILVSEMDERGLEIDEFTQSALTRMYIE 477

Query: 459 A 459
           A
Sbjct: 478 A 478



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 167/404 (41%), Gaps = 78/404 (19%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A +L     +L+   +   YN+ + +  K  ++D+A   F  M +  ++PD V++ TL+ 
Sbjct: 379 AASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRAASYFKKMKEARLEPDLVSYRTLLY 438

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALT------------------------------- 237
              + +L  +A      M   G + D  T                               
Sbjct: 439 AFSIRHLVGEAEILVSEMDERGLEIDEFTQSALTRMYIEAGMLKKSWLWFRRFHLEGNMS 498

Query: 238 ---YSSMIDAYGRAGNV---EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
              YS+ IDAYG  G++   E AF     +R    ++    F+ +IK YG +  ++    
Sbjct: 499 SECYSANIDAYGERGHILEAEKAFLCCKESR----KLSVLEFNVMIKAYGISNRYEKACQ 554

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-------------------------- 325
           + + M+  GV P+  +YN+L+  +  A  P + K                          
Sbjct: 555 LIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLMKMQETQLVSDCIPYCAVISSFI 614

Query: 326 ---------TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
                     ++KEM    + P+   Y  L+ A+       + ++    ++  G+ ++  
Sbjct: 615 KLGQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVREAVNYVNALRNAGLPMNAV 674

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
           +YN+L+ +   VGY +EA E ++ +++SE   PD ++ + MI + S R  V +AE +F  
Sbjct: 675 IYNSLIKLYTKVGYLEEAQEAYKMLQASE-VGPDVYSSNCMIDLYSERSMVKQAEEIFES 733

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +   G + N F    ++  Y +  +  +  + + ++ ELG+  D
Sbjct: 734 LKRKG-DANEFSFAMMLCMYKRIGKLKEAFQIVQKMRELGLVTD 776



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 145/341 (42%), Gaps = 41/341 (12%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ +NV +K +      +KA +L D M + GV PD  ++++LI      +LP+KA  +  
Sbjct: 533 VLEFNVMIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLM 592

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M       D + Y ++I ++ + G +EMA GL+        + D   +  LI  +   G
Sbjct: 593 KMQETQLVSDCIPYCAVISSFIKLGQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVG 652

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N    +N    ++  G+  N + YN                                   
Sbjct: 653 NVREAVNYVNALRNAGLPMNAVIYN----------------------------------- 677

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL++ Y +  Y E+    Y+ ++   +   V   N ++ + ++     +A EIFE +K  
Sbjct: 678 SLIKLYTKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVKQAEEIFESLKRK 737

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            +   + ++F+ M+ +    GK+ EA  +  +M E G   +L    +++  Y    R  D
Sbjct: 738 GDA--NEFSFAMMLCMYKRIGKLKEAFQIVQKMRELGLVTDLLSYNNVLGFYAMDGRFKD 795

Query: 465 VVRALNRLPELGITPDD---RFCGCLLNVMTQTPKEELGKL 502
            V     + E  I PDD   +  G +L V    PK+ +GKL
Sbjct: 796 AVGTFKEMIEAAIQPDDCTFKSLGVVL-VKCGIPKQAVGKL 835



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 119/299 (39%), Gaps = 39/299 (13%)

Query: 126 LGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAE 185
           L D F     + IL +   P  A   L         S + I Y   +  F K   L+ AE
Sbjct: 565 LPDKFSYNSLIQILASADLPHKAKFYLMKMQETQLVS-DCIPYCAVISSFIKLGQLEMAE 623

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
            LF +M+   V+PD V +  L                                   I+A+
Sbjct: 624 GLFKEMIGYNVQPDVVVYGIL-----------------------------------INAF 648

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
              GNV  A    +  RN    ++   +++LIKLY   G  +     Y+ ++A  V P++
Sbjct: 649 ADVGNVREAVNYVNALRNAGLPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQASEVGPDV 708

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
            + N ++D         Q + I++ +   G   N  ++A +L  Y R    ++   + ++
Sbjct: 709 YSSNCMIDLYSERSMVKQAEEIFESLKRKG-DANEFSFAMMLCMYKRIGKLKEAFQIVQK 767

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM-ITICSC 423
           M+E G+   +  YN +L   A  G   +A   F++M  +   QPD  TF S+ + +  C
Sbjct: 768 MRELGLVTDLLSYNNVLGFYAMDGRFKDAVGTFKEMIEAA-IQPDDCTFKSLGVVLVKC 825



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 104/229 (45%), Gaps = 24/229 (10%)

Query: 286 FDGCLNVYEEMKAIGV-KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           ++  L ++E +K  G  + N+I YN +L  +G+A++   V++++ EM   G++P  +TY 
Sbjct: 176 WERALEIFEWLKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYG 235

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF------ 398
           +L+  Y +    E+ L     M ++GM+        ++      G   +A + F      
Sbjct: 236 TLIDVYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLG 295

Query: 399 ----EDMKSSE---------NCQP----DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
               ++ K+SE           QP     S+T++++I      G++ EA   F  ML  G
Sbjct: 296 KTLKDEGKTSEPTATSAVESASQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLREG 355

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
             PN     ++I   G   + ++    + ++ EL   PD R    L+++
Sbjct: 356 IIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISL 404



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 112/264 (42%), Gaps = 13/264 (4%)

Query: 218 KAVEWFERMPSFGC-DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           +A+E FE +   GC + + + Y+ M+   G+A        L+D   +       + + TL
Sbjct: 178 RALEIFEWLKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTL 237

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           I +Y   G  +  L+  + M   G++P+ +T   ++ T  +A    + +  +K       
Sbjct: 238 IDVYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAGEFKKAEQFFK------- 290

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
             NW +    L+  G+      T +V     +  + LS   YNTL+      G   EA +
Sbjct: 291 --NW-SLGKTLKDEGKTSEPTATSAV-ESASQPHVCLSSYTYNTLIDTYGKAGQLREASD 346

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
            F  M   E   P++ TF++MI IC   G++ EA ++  +M E    P+      LI  +
Sbjct: 347 TFAWM-LREGIIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISLH 405

Query: 457 GKAQRTDDVVRALNRLPELGITPD 480
            K    D       ++ E  + PD
Sbjct: 406 AKHNNIDRAASYFKKMKEARLEPD 429


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 154/326 (47%), Gaps = 12/326 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y+  +  F K  DLDK       MLD+ + P+ VT++++I+        +KA+E  
Sbjct: 87  DVVSYSTVINGFFKEGDLDK-------MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVL 139

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  PD +TY+S++  +  +G  + A     + R++    D   +++L+      
Sbjct: 140 TTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKN 199

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       +++ M   G+KP++ TY  LL          ++  +   M  NG+ PN   +
Sbjct: 200 GRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 259

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+ AY +    E+ + V+ +M+++G+  +   Y T++ +    G  ++A   FE M  
Sbjct: 260 SILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQM-I 318

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            E  +PDS  ++S+I       K  +AE +F EML+ G   +     S+I  + K  R  
Sbjct: 319 DEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVI 378

Query: 464 DVVRALNRLPELGITPD----DRFCG 485
           +  +  + +  +G+ PD     RF G
Sbjct: 379 ESGKLFDLMVRIGVKPDIITLGRFLG 404



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 148/303 (48%), Gaps = 15/303 (4%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG--CDPDALTYS 239
           + A  +FD++L RG+ PD  +++ L++     N   +A+E    M   G  C PD ++YS
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMK 297
           ++I+ + + G++       D+  ++  RI PN   ++++I     A   D  + V   M 
Sbjct: 93  TVINGFFKEGDL-------DKMLDQ--RISPNVVTYNSIIAALCKAQTVDKAMEVLTTMV 143

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
             GV P+ +TYN+++     + +P +     K+M  +G+ P+  TY SL+    +     
Sbjct: 144 KSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCT 203

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           +   ++  M ++G++  +T Y TLL   A  G   E   +  D+       P+ + FS +
Sbjct: 204 EARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIHPNHYVFSIL 262

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           +   + + KV EA  +F++M + G  PN     ++I    K+ R +D +    ++ + G+
Sbjct: 263 VCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGL 322

Query: 478 TPD 480
            PD
Sbjct: 323 RPD 325



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 92/216 (42%), Gaps = 23/216 (10%)

Query: 151 ALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ YF   +      + I+YN  +         +KAE LF +MLDRG+    + F+++I 
Sbjct: 310 AMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIID 369

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA----YGRAGNVEMAF-GLYDRARN 263
                    ++ + F+ M   G  PD +T    + +    Y    N+   F  + +    
Sbjct: 370 SHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFLGSARRDYSLFVNIYFIFTNMSNTGDK 429

Query: 264 EKWR-IDPNAFSTL-------------IKLYGTAGN--FDGCLNVYEEMKAIGVKPNMIT 307
           EK   ++ N  +T              I L+G   N   D  L +++ +  + +K    T
Sbjct: 430 EKETPVNTNGGNTASNSSGGPFLGTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEART 489

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           +N ++D + +  R  + K ++   + NGL PN+ TY
Sbjct: 490 FNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 525


>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like, partial [Cucumis sativus]
          Length = 564

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 162/345 (46%), Gaps = 5/345 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           VI Y   + ++ K   + KA  +  +M   G+K +  T+S LI+   ++ +  N A   F
Sbjct: 88  VITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWAN-AFAIF 146

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E +   G  PD + Y+++I A+   G ++ A       + ++ +     F  +I  +   
Sbjct: 147 EDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARK 206

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     L+V++ M+  G  P + TYN L+  +   ++  + + I  EMT  G+SPN +TY
Sbjct: 207 GEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTY 266

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +++  Y          + + +++++G+QL V  Y  LL  C   G    A  + ++M S
Sbjct: 267 TTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEM-S 325

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           ++N   +++ ++ +I   + RG V EA  +  +M   G +P++   TS I    KA    
Sbjct: 326 AQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQ 385

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 508
              + +  +  +G+ P+ +    L+N   +    E  K + C E+
Sbjct: 386 RATKTIEEMKSVGVKPNVKTYTTLINGWARASLPE--KALSCFEE 428



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 134/304 (44%), Gaps = 8/304 (2%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F +  ++ KA  +FD M   G  P   T++ LI          KA +  + M   G  P+
Sbjct: 203 FARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPN 262

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
             TY++++  Y   G+   AF  + + R+E  ++D   +  L+K    +G     L V +
Sbjct: 263 EHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTK 322

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           EM A  +  N   YN L+D   R    W+   + ++M   G+ P+ +TY S + A  +A 
Sbjct: 323 EMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAG 382

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             +       EMK  G++ +V  Y TL+   A     ++A   FE+MK S   +PD   +
Sbjct: 383 DMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLS-GLKPDRAVY 441

Query: 415 SSMITICSCRGKVSEA------EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT-DDVVR 467
             ++T    R  V+         ++  EM++     ++       +C  K +RT  ++  
Sbjct: 442 HCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDMGTAVHWSKCLLKIERTGGEITE 501

Query: 468 ALNR 471
           AL +
Sbjct: 502 ALQK 505



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 149/353 (42%), Gaps = 41/353 (11%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I  N+     ++C ++DKAE L  +M + G+      + T++    M    +K +  FE
Sbjct: 19  IIYGNIIYAYCQRC-NMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFE 77

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           R    G +P  +TY  +I+ Y + G V  A  +     +   + +   +S LI  +    
Sbjct: 78  RFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLK 137

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDT---MGRAKRP-WQVKTIYKE---------- 330
           ++     ++E++   G+KP+++ YNN++     MG+  R    VK + K+          
Sbjct: 138 DWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFM 197

Query: 331 ---------------------MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
                                M  +G  P  +TY +L+      R  E    +  EM   
Sbjct: 198 PIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLA 257

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G+  +   Y T++   A +G T +AF  F  ++  E  Q D +T+ +++  C   G++  
Sbjct: 258 GVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLR-DEGLQLDVYTYEALLKACCKSGRMQS 316

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD--DVVRALNRLPELGITPD 480
           A A+  EM       N F+   LI   G A+R D  +    + ++   G+ PD
Sbjct: 317 ALAVTKEMSAQNIPRNTFIYNILID--GWARRGDVWEAADLMQQMKREGVQPD 367



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 128/264 (48%), Gaps = 1/264 (0%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A  WF+         +A+ Y ++I AY +  N++ A  L      E      + + T++ 
Sbjct: 2   ADHWFQEAKEKHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMD 61

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            Y   G+ D CL V+E  K  G+ P++ITY  L++   +  +  +   + KEM   G+  
Sbjct: 62  GYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKH 121

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N  TY+ L+  + + +   +  +++ ++ + G++  V LYN ++     +G  D A    
Sbjct: 122 NMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTV 181

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           ++M+   + +P + TF  +I   + +G++ +A  +F+ M  +G  P +    +LI    +
Sbjct: 182 KEMQKQRH-KPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVE 240

Query: 459 AQRTDDVVRALNRLPELGITPDDR 482
            ++ +   + L+ +   G++P++ 
Sbjct: 241 KRKMEKAEQILDEMTLAGVSPNEH 264



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 133/299 (44%), Gaps = 5/299 (1%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           A+  F +  ++    + + +  +I   C R N   +KA      M   G D     Y +M
Sbjct: 2   ADHWFQEAKEKHSSLNAIIYGNIIYAYCQRCN--MDKAEALVREMEEEGIDAPIDIYHTM 59

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           +D Y   G+ +    +++R +          +  LI LY   G     L V +EM+  G+
Sbjct: 60  MDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGI 119

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           K NM TY+ L++   + K       I++++  +G+ P+   Y +++ A+      +  + 
Sbjct: 120 KHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVC 179

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
             +EM+++  + +   +  ++   A  G   +A ++F+ M+ S  C P   T++++I   
Sbjct: 180 TVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMS-GCIPTVHTYNALILGL 238

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             + K+ +AE + +EM  AG  PN    T+++  Y     T        +L + G+  D
Sbjct: 239 VEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLD 297



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 41/243 (16%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  YN  +    + R ++KAE++ D+M   GV P+  T++T++          KA  +F 
Sbjct: 228 VHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFT 287

Query: 225 RMPSFGCDPDALTYSSM-----------------------------------IDAYGRAG 249
           ++   G   D  TY ++                                   ID + R G
Sbjct: 288 KLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRG 347

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
           +V  A  L  + + E  + D + +++ I     AG+        EEMK++GVKPN+ TY 
Sbjct: 348 DVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYT 407

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGE-----DTLSVY 363
            L++   RA  P +  + ++EM  +GL P+   Y  L+ +   RA           LSV 
Sbjct: 408 TLINGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVC 467

Query: 364 REM 366
           REM
Sbjct: 468 REM 470


>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 196/418 (46%), Gaps = 78/418 (18%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWF 223
           VI+    MK +    D++ A +LFD++++ GV PD V FS LI+ C+++ ++  KA E +
Sbjct: 325 VIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDM-EKAYELY 383

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            RM   G  P+    +S+++ +     +E A+GL+D A  E    +   ++ L+K  G  
Sbjct: 384 TRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAV-EHGITNVVTYNILLKWLGEL 442

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK--TIYKEMTDNGLSPNWN 341
           G  +   N++E+M + G+ P++++YNNL+  +G  K+    K  ++ K + + GL PN  
Sbjct: 443 GKVNEACNLWEKMVSKGITPSLVSYNNLI--LGHCKKGCMDKAYSMLKSILERGLKPNAV 500

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY  L+  + +                                    G ++ AF +FE M
Sbjct: 501 TYTLLIDGFFKK-----------------------------------GDSERAFVVFEQM 525

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
            ++ N  P   TF+++I      G+VSE +   N  ++ GF        S+I  + K   
Sbjct: 526 MAA-NIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGA 584

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLL 521
            D  + A   + E GI+PD         V+T T       L++ + KSN K+G  +    
Sbjct: 585 VDSALLAYREMCESGISPD---------VITYT------SLIDGLCKSN-KIGLAL---- 624

Query: 522 EEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK----LLELGLT 575
              ++  D K +  +L      DV  AY + LID    ++ +E+A K    LL++GLT
Sbjct: 625 ---EMHSDMKYKGMKL------DV-VAY-SALIDGFCKMHDMESASKFFTELLDIGLT 671



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 202/462 (43%), Gaps = 55/462 (11%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGV----------------------------- 196
           I+ N+   + R+    D A +L+D+M++RG+                             
Sbjct: 187 IMNNLLTAMVRRNMVCD-ARQLYDEMVERGIYGDCYTLHVVMRACMKEGKFEEVEKFFKE 245

Query: 197 ------KPDNVTFSTLIS--CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
                 + D   +S L+   C R++   N A E  + M  FG  P   TY+++I A  + 
Sbjct: 246 AKGRGLEVDAAAYSILVQAVCRRLD--LNLACELLKEMREFGWVPSKGTYTAVIVACVKQ 303

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           GN   A  L D   +    ++     +L+K Y   G+ +  L +++E+   GV P+++ +
Sbjct: 304 GNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIF 363

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           + L++   +     +   +Y  M   G+ PN     SLL  +      E    ++ E  E
Sbjct: 364 SVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVE 423

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G+   VT YN LL    ++G  +EA  ++E M  S+   P   +++++I     +G + 
Sbjct: 424 HGITNVVT-YNILLKWLGELGKVNEACNLWEKM-VSKGITPSLVSYNNLILGHCKKGCMD 481

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           +A +M   +LE G +PN    T LI  + K   ++       ++    I P D     ++
Sbjct: 482 KAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVI 541

Query: 489 NVMTQTPKEELGKLVECVEKSNS--KLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 546
           N + +T     G++ E  +K N+  K G+V   +     I+G FK+ A +     +    
Sbjct: 542 NGLGKT-----GRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVD----SALLAY 592

Query: 547 KAYCNCLI--DLCVNLNLLENACKLLELGLTLEVYTDIQSRS 586
           +  C   I  D+    +L++  CK  ++GL LE+++D++ + 
Sbjct: 593 REMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKG 634



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/344 (20%), Positives = 144/344 (41%), Gaps = 36/344 (10%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +DKA  +   +L+RG+KP+ VT++ LI          +A   FE+M +    P   T+++
Sbjct: 480 MDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNT 539

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I+  G+ G V       +    + +      ++++I  +   G  D  L  Y EM   G
Sbjct: 540 VINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESG 599

Query: 301 VKPNMITYNNLLDTMGRAKRPW-----------------------------------QVK 325
           + P++ITY +L+D + ++ +                                        
Sbjct: 600 ISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESAS 659

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
             + E+ D GL+PN   Y S++  +      E  L++++EM +  +   + +Y +++   
Sbjct: 660 KFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGL 719

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G    A +++ +M  S++  PD   ++ +I   S  G++  A  +  EM      P+
Sbjct: 720 LKEGKLSLALDLYSEM-LSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPS 778

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           + V   LI    +     +  R  + + + G+ PDD     L+N
Sbjct: 779 VLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVN 822



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 131/292 (44%), Gaps = 2/292 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V + N  ++ F +   L+ A  LFD+ ++ G+  + VT++ L+         N+A   +E
Sbjct: 395 VFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGI-TNVVTYNILLKWLGELGKVNEACNLWE 453

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M S G  P  ++Y+++I  + + G ++ A+ +         + +   ++ LI  +   G
Sbjct: 454 KMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKG 513

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           + +    V+E+M A  + P   T+N +++ +G+  R  + +         G      TY 
Sbjct: 514 DSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYN 573

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           S++  + +    +  L  YREM E G+   V  Y +L+           A E+  DMK  
Sbjct: 574 SIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMK-Y 632

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           +  + D   +S++I        +  A   F E+L+ G  PN  V  S+I  +
Sbjct: 633 KGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGF 684



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/278 (19%), Positives = 125/278 (44%), Gaps = 1/278 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N  +    K   + + +   ++ + +G    ++T++++I         + A+  +  M 
Sbjct: 537 FNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMC 596

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD +TY+S+ID   ++  + +A  ++   + +  ++D  A+S LI  +    + +
Sbjct: 597 ESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDME 656

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
                + E+  IG+ PN + YN+++              +++EM  N +  +   Y S++
Sbjct: 657 SASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSII 716

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +       L +Y EM  K +   + +Y  L+   ++ G  + A +I ++M  + N 
Sbjct: 717 GGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGN-NI 775

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            P    ++ +I      G + EA  + +EML+ G  P+
Sbjct: 776 TPSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPD 813



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 151/362 (41%), Gaps = 43/362 (11%)

Query: 34  SFYSKTSLQKRSVSLQETQSSN--PTKHSQNPQYPH-GKTGSSPKSYIWVNPKSPRASKL 90
            F+ K   ++  V  ++  ++N  PT H+ N      GKTG              R S+ 
Sbjct: 508 GFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTG--------------RVSET 553

Query: 91  KEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAAL 150
           ++K      N+ +K      S S T + +        D F ++  V         D+A L
Sbjct: 554 QDK-----LNNFIK--QGFVSTSITYNSII-------DGFFKEGAV---------DSALL 590

Query: 151 ALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SC 209
           A          S +VI Y   +    K   +  A  +  DM  +G+K D V +S LI   
Sbjct: 591 AYREMCES-GISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGF 649

Query: 210 ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
            +M+++ + A ++F  +   G  P+ + Y+SMI  +    N+E A  L+      K   D
Sbjct: 650 CKMHDMES-ASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCD 708

Query: 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
              ++++I      G     L++Y EM +  + P+++ Y  L++ +    +      I K
Sbjct: 709 LQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILK 768

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
           EM  N ++P+   Y  L+    R    ++   ++ EM +KG+    T Y+ L+     V 
Sbjct: 769 EMDGNNITPSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVNGKLKVS 828

Query: 390 YT 391
           +T
Sbjct: 829 HT 830



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 100/222 (45%), Gaps = 3/222 (1%)

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   F+ L+K +         +  +  M    + P +   NNLL  M R       + +Y
Sbjct: 149 DSRVFNYLLKSFVRVNKITDAVECFRTMLEHDLVPWVPIMNNLLTAMVRRNMVCDARQLY 208

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD 387
            EM + G+  +  T   ++RA  +    E+    ++E K +G+++    Y+ L+ A+C  
Sbjct: 209 DEMVERGIYGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCRR 268

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           +   + A E+ ++M+      P   T++++I  C  +G   EA  + +EM+  G   N+ 
Sbjct: 269 LDL-NLACELLKEMREF-GWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVI 326

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           V  SL++ Y      +  ++  + + E G+ PD      L+N
Sbjct: 327 VTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLIN 368


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 159/340 (46%), Gaps = 6/340 (1%)

Query: 137 IILNNMTNPDTAALALTYFTN-KLKASK-EVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           II++ +    +   A   F   ++K  K ++I+Y   ++ F      D   +L  DM+ R
Sbjct: 252 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR 311

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
            + PD V FS LI C        +A E  + M   G  PD +TY+S+ID + +   ++ A
Sbjct: 312 KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKA 371

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             + D   ++    +   F+ LI  Y  A   D  L ++ +M   GV  + +TYN L+  
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
                +    K +++EM    + P+  +Y  LL         E  L ++ ++++  M+L 
Sbjct: 432 FCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELD 491

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           + +YN ++    +    D+A+++F  +   +  +PD  T++ MI     +G +SEA+ +F
Sbjct: 492 IGIYNIIIHGMCNASKVDDAWDLFCSL-PLKGVKPDVKTYNIMIGGLCKKGSLSEADLLF 550

Query: 435 NEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNR 471
            +M E G  PN      LI+ +   G A ++  ++  + R
Sbjct: 551 RKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKR 590



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 138/315 (43%), Gaps = 1/315 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   +KV  K      A  L   M +R +K D V +S +I     +   + A   F  
Sbjct: 213 VTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 272

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G   D + Y+++I  +  AG  +    L       K   D  AFS LI  +   G 
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGK 332

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 +++EM   G+ P+ +TY +L+D   +  +  +   +   M   G  PN  T+  
Sbjct: 333 LREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNI 392

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  Y +A   +D L ++R+M  +G+      YNTL+    ++G  + A E+F++M  S 
Sbjct: 393 LINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEM-VSR 451

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +PD  ++  ++      G+  +A  +F ++ ++  E ++ +   +I     A + DD 
Sbjct: 452 RVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDA 511

Query: 466 VRALNRLPELGITPD 480
                 LP  G+ PD
Sbjct: 512 WDLFCSLPLKGVKPD 526



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 163/369 (44%), Gaps = 4/369 (1%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           +CR L  A      ++  G +PD VTFSTLI+   +    ++A+E  +RM   G  P  +
Sbjct: 119 RCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLI 178

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           T +++++     G V  A  L DR     ++ +   +  ++K+   +G     + +  +M
Sbjct: 179 TLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKM 238

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           +   +K + + Y+ ++D + +         ++ EM   G   +   Y +L+R +  A   
Sbjct: 239 EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           +D   + R+M ++ +   V  ++ L+      G   EA E+ ++M       PD+ T++S
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEM-IQRGISPDTVTYTS 357

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I       ++ +A  M + M+  G  PN+     LI  Y KA   DD +    ++   G
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRG 417

Query: 477 ITPDDRFCGCLLNVMTQTPKEELGK--LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEA 534
           +  D      L+    +  K E+ K    E V +         K+LL+     G+ +K A
Sbjct: 418 VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEK-A 476

Query: 535 TELFNSISK 543
            E+F  I K
Sbjct: 477 LEIFEKIEK 485



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 136/343 (39%), Gaps = 36/343 (10%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D A  LF +M     +P  + FS L S        +  ++  ++M   G   +  T S M
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I+   R   + +AF    +     +  D   FSTLI      G     L + + M  +G 
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           KP +IT N L++ +    +      +   M + G  PN  TY  +L+   ++      + 
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAME 233

Query: 362 VYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMK------------------ 402
           + R+M+E+ ++L    Y+ ++  +C D G  D AF +F +M+                  
Sbjct: 234 LLRKMEERKIKLDAVKYSIIIDGLCKD-GSLDNAFNLFNEMEIKGFKADIIIYTTLIRGF 292

Query: 403 ----------------SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
                                 PD   FS++I      GK+ EAE +  EM++ G  P+ 
Sbjct: 293 CYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDT 352

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
              TSLI  + K  + D     L+ +   G  P+ R    L+N
Sbjct: 353 VTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILIN 395



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 101/220 (45%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N+ +  + K   +D    LF  M  RGV  D VT++TLI           A E F+ M 
Sbjct: 390 FNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMV 449

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S    PD ++Y  ++D     G  E A  ++++    K  +D   ++ +I     A   D
Sbjct: 450 SRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVD 509

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              +++  +   GVKP++ TYN ++  + +     +   ++++M ++G SPN  TY  L+
Sbjct: 510 DAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILI 569

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           RA+        +  +  E+K  G  +  +    ++ M +D
Sbjct: 570 RAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDMLSD 609



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 64/145 (44%), Gaps = 2/145 (1%)

Query: 137 IILNNMTNPDTAALALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+L+ + +      AL  F    K K   ++ +YN+ +        +D A  LF  +  +
Sbjct: 462 ILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK 521

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           GVKPD  T++ +I         ++A   F +M   G  P+  TY+ +I A+   G+   +
Sbjct: 522 GVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKS 581

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKL 279
             L +  +   + +D +    ++ +
Sbjct: 582 AKLIEEIKRCGFSVDASTVKMVVDM 606


>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
          Length = 579

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 163/344 (47%), Gaps = 5/344 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +++  K     K    FD+M+ +G   + + F+T+I     N + +K +    +M 
Sbjct: 201 YTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMV 260

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C P+  TYS  +D     G +     + D       R   + +S L+K    +G+  
Sbjct: 261 ENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNR---SIYSYLVKSLCKSGHAS 317

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              NV+  M     K +   + ++L+ +  A++  +   +   M + G+  +   Y  + 
Sbjct: 318 EAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVF 377

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A G+ +      +++ +MK  G+   V  YN +++    VG  D+A E+FE M++S +C
Sbjct: 378 SALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEAS-SC 436

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD  T++S+I      G + EA  +F EM E G++P++F  + LI+C+GK+ + +    
Sbjct: 437 KPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACS 496

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 510
             + +   G TP+      LL+ + +  K EE  KL E +++  
Sbjct: 497 LFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQG 540



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 103/191 (53%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V +YN+      K + +     LFD M   G+ PD  T++ +IS      L +KA E F
Sbjct: 369 DVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELF 428

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M +  C PD +TY+S+I+  G+ G+++ A  L+   + + +  D   +S LI+ +G +
Sbjct: 429 EVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKS 488

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              +   ++++EM + G  PN++TYN LLD + R  +  +   +Y+ M   GL P+  TY
Sbjct: 489 NKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITY 548

Query: 344 ASLLRAYGRAR 354
           + L R   R++
Sbjct: 549 SILERLESRSQ 559



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 139/313 (44%), Gaps = 19/313 (6%)

Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFT--------NKLKASKEVI------ 166
           +++  LG + +    + +L+ M   D      TY           +L    EV+      
Sbjct: 238 TIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRF 297

Query: 167 ----LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
               +Y+  +K   K     +A  +F  M +   K D   F +++          +A++ 
Sbjct: 298 MNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDL 357

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
              MP  G   D   Y+ +  A G+   V     L+D+ +      D   ++ +I  YG 
Sbjct: 358 LHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGR 417

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G  D    ++E M+A   KP+++TYN+L++ +G+     +   ++KEM + G  P+  T
Sbjct: 418 VGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFT 477

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y+ L+  +G++   E   S++ EM  +G   ++  YN LL      G T+EA +++E MK
Sbjct: 478 YSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMK 537

Query: 403 SSENCQPDSWTFS 415
             +   PDS T+S
Sbjct: 538 -QQGLIPDSITYS 549



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 130/289 (44%), Gaps = 10/289 (3%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G++    T+  ++     +   +K  + +E M   G   D   Y+ ++DA  +AG V+ A
Sbjct: 123 GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQA 182

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
           F +++  + +    D   ++ LI++ G AG     L+ ++EM + G   N+I +N +++ 
Sbjct: 183 FQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEA 242

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYA---SLLRAYGRARYGEDTLSVYREMKEKGM 371
           +G+ K   +V  +  +M +N   PN  TY+    +L   G+     + L +      +  
Sbjct: 243 LGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNR-- 300

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
               ++Y+ L+      G+  EA  +F  M +S   + D   F SM+ +     K  EA 
Sbjct: 301 ----SIYSYLVKSLCKSGHASEAHNVFCRMWNSHE-KGDRDAFVSMLEVLCNAEKTLEAI 355

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            + + M E G   ++ +   +    GK ++   +    +++   GI PD
Sbjct: 356 DLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPD 404



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 99/199 (49%), Gaps = 8/199 (4%)

Query: 187 LFDDMLDRGVKPD----NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           L   M ++G+  D    N+ FS L    +++ + N     F++M + G  PD  TY+ MI
Sbjct: 357 LLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISN----LFDKMKTNGIIPDVFTYNIMI 412

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            +YGR G V+ A  L++       + D   +++LI   G  G+ D    +++EM+  G  
Sbjct: 413 SSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYD 472

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P++ TY+ L++  G++ +     +++ EM   G +PN  TY  LL    R    E+   +
Sbjct: 473 PDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKL 532

Query: 363 YREMKEKGMQLSVTLYNTL 381
           Y  MK++G+      Y+ L
Sbjct: 533 YETMKQQGLIPDSITYSIL 551


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 143/320 (44%), Gaps = 4/320 (1%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A  +VI YNV +  + K  ++DKA  + + M    V PD VT++T++     +    +A+
Sbjct: 172 AVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEAM 228

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E  +R     C PD +TY+ +I+A      V  A  L D  R +  + D   ++ LI   
Sbjct: 229 EVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGI 288

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G  D  +     M + G KPN+IT+N +L +M    R    + +  +M   G SP+ 
Sbjct: 289 CKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSV 348

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            T+  L+    R R     + V  +M + G   +   YN LL         D A E  E 
Sbjct: 349 VTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEI 408

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M  S  C PD  T+++++T     GKV  A  + N++   G  P L    ++I    K  
Sbjct: 409 M-VSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVG 467

Query: 461 RTDDVVRALNRLPELGITPD 480
           +T+  V  L  +   G+ PD
Sbjct: 468 KTEYAVELLEEMRRKGLKPD 487



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 154/323 (47%), Gaps = 3/323 (0%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           ++  + +V+ YN  ++       L +A  + D  L R   PD +T++ LI     ++   
Sbjct: 201 RMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVG 260

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +A++  + M   GC PD +TY+ +I+   + G ++ A    +   +   + +    + ++
Sbjct: 261 QAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIIL 320

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           +   + G +     +  +M   G  P+++T+N L++ + R +   +   + ++M  +G  
Sbjct: 321 RSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCV 380

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFE 396
           PN  +Y  LL  + + +  +  +     M  +G    +  YNTLL A+C D G  D A E
Sbjct: 381 PNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD-GKVDAAVE 439

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           I   + SS+ C P   T++++I   +  GK   A  +  EM   G +P++   ++L++  
Sbjct: 440 ILNQL-SSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGL 498

Query: 457 GKAQRTDDVVRALNRLPELGITP 479
           G+  + D+ ++  + +  L I P
Sbjct: 499 GREGKVDEAIKIFHDMEGLSIKP 521



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 132/278 (47%), Gaps = 1/278 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI +N+ ++          AERL  DML +G  P  VTF+ LI+      L  +A++  E
Sbjct: 313 VITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLE 372

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +MP  GC P++L+Y+ ++  + +   ++ A    +   +     D   ++TL+      G
Sbjct: 373 KMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDG 432

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  + +  ++ + G  P +ITYN ++D + +  +      + +EM   GL P+  TY+
Sbjct: 433 KVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYS 492

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +LLR  GR    ++ + ++ +M+   ++ S   YN ++        T  A +    M   
Sbjct: 493 TLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYM-VE 551

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
           + C+P   T++ +I   +  G   EA  + NE+   GF
Sbjct: 552 KGCKPTEATYTILIEGIADEGLAEEALELLNELCSRGF 589



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 126/290 (43%), Gaps = 36/290 (12%)

Query: 164 EVILYNVTMKVFRKCRDLDK-----------------------------------AERLF 188
           +V+ YNV +    K   LD+                                   AERL 
Sbjct: 277 DVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLL 336

Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
            DML +G  P  VTF+ LI+      L  +A++  E+MP  GC P++L+Y+ ++  + + 
Sbjct: 337 SDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQE 396

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
             ++ A    +   +     D   ++TL+      G  D  + +  ++ + G  P +ITY
Sbjct: 397 KKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITY 456

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N ++D + +  +      + +EM   GL P+  TY++LLR  GR    ++ + ++ +M+ 
Sbjct: 457 NTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEG 516

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
             ++ S   YN ++        T  A +    M   + C+P   T++ +I
Sbjct: 517 LSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYM-VEKGCKPTEATYTILI 565



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 124/253 (49%), Gaps = 2/253 (0%)

Query: 137 IILNNMTNPDTAALALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           IIL +M +      A    ++ L+   S  V+ +N+ +    + R L +A  + + M   
Sbjct: 318 IILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKH 377

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G  P++++++ L+         ++A+E+ E M S GC PD +TY++++ A  + G V+ A
Sbjct: 378 GCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAA 437

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             + ++  ++        ++T+I      G  +  + + EEM+  G+KP++ITY+ LL  
Sbjct: 438 VEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRG 497

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           +GR  +  +   I+ +M    + P+  TY +++    +A+     +     M EKG + +
Sbjct: 498 LGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPT 557

Query: 375 VTLYNTLLAMCAD 387
              Y  L+   AD
Sbjct: 558 EATYTILIEGIAD 570



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/343 (20%), Positives = 135/343 (39%), Gaps = 33/343 (9%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ ++   +  +L++  +  + M+ +G  PD +  ++LI     +    KA    E + +
Sbjct: 110 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILEN 169

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAF--------------------------------G 256
            G  PD +TY+ +I  Y ++G ++ A                                  
Sbjct: 170 SGAVPDVITYNVLIGGYCKSGEIDKALEVLERMSVAPDVVTYNTILRSLCDSGKLKEAME 229

Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           + DR    +   D   ++ LI+           + + +EM+  G KP+++TYN L++ + 
Sbjct: 230 VLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGIC 289

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +  R  +       M   G  PN  T+  +LR+        D   +  +M  KG   SV 
Sbjct: 290 KEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVV 349

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            +N L+           A ++ E M     C P+S +++ ++       K+  A      
Sbjct: 350 TFNILINFLCRKRLLGRAIDVLEKM-PKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEI 408

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           M+  G  P++    +L+    K  + D  V  LN+L   G +P
Sbjct: 409 MVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSP 451


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 147/311 (47%), Gaps = 4/311 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I+Y   ++ F      D   +L  DM+ R + PD V FS LI C        +A E  
Sbjct: 281 DIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELH 340

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   G  PD +TY+S+ID + +   ++ A  + D   ++    +   F+ LI  Y  A
Sbjct: 341 KEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKA 400

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D  L ++ +M   GV  + +TYN L+       +    K +++EM    + P+  +Y
Sbjct: 401 NLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSY 460

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             LL         E  L ++ ++++  M+L + +YN ++    +    D+A+++F  +  
Sbjct: 461 KILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL-P 519

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQ 460
            +  +PD  T++ MI     +G +SEA+ +F +M E G  PN      LI+ +   G A 
Sbjct: 520 LKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDAT 579

Query: 461 RTDDVVRALNR 471
           ++  ++  + R
Sbjct: 580 KSAKLIEEIKR 590



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 138/315 (43%), Gaps = 1/315 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   +KV  K      A  L   M +R +K D V +S +I     +   + A   F  
Sbjct: 213 VTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 272

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G   D + Y+++I  +  AG  +    L       K   D  AFS LI  +   G 
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGK 332

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 +++EM   G+ P+ +TY +L+D   +  +  +   +   M   G  PN  T+  
Sbjct: 333 LREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNI 392

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  Y +A   +D L ++R+M  +G+      YNTL+    ++G  + A E+F++M  S 
Sbjct: 393 LINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEM-VSR 451

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +PD  ++  ++      G+  +A  +F ++ ++  E ++ +   +I     A + DD 
Sbjct: 452 RVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDA 511

Query: 466 VRALNRLPELGITPD 480
                 LP  G+ PD
Sbjct: 512 WDLFCSLPLKGVKPD 526



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 163/369 (44%), Gaps = 4/369 (1%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           +CR L  A      ++  G +PD VTFSTLI+   +    ++A+E  +RM   G  P  +
Sbjct: 119 RCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLI 178

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           T +++++     G V  A  L DR     ++ +   +  ++K+   +G     + +  +M
Sbjct: 179 TLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKM 238

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           +   +K + + Y+ ++D + +         ++ EM   G   +   Y +L+R +  A   
Sbjct: 239 EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           +D   + R+M ++ +   V  ++ L+      G   EA E+ ++M       PD+ T++S
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEM-IQRGISPDTVTYTS 357

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I       ++ +A  M + M+  G  PN+     LI  Y KA   DD +    ++   G
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRG 417

Query: 477 ITPDDRFCGCLLNVMTQTPKEELGK--LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEA 534
           +  D      L+    +  K E+ K    E V +         K+LL+     G+ +K A
Sbjct: 418 VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEK-A 476

Query: 535 TELFNSISK 543
            E+F  I K
Sbjct: 477 LEIFEKIEK 485



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 136/343 (39%), Gaps = 36/343 (10%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D A  LF +M     +P  + FS L S        +  ++  ++M   G   +  T S M
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I+   R   + +AF    +     +  D   FSTLI      G     L + + M  +G 
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           KP +IT N L++ +    +      +   M + G  PN  TY  +L+   ++      + 
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAME 233

Query: 362 VYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMK------------------ 402
           + R+M+E+ ++L    Y+ ++  +C D G  D AF +F +M+                  
Sbjct: 234 LLRKMEERKIKLDAVKYSIIIDGLCKD-GSLDNAFNLFNEMEIKGFKADIIIYTTLIRGF 292

Query: 403 ----------------SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
                                 PD   FS++I      GK+ EAE +  EM++ G  P+ 
Sbjct: 293 CYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDT 352

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
              TSLI  + K  + D     L+ +   G  P+ R    L+N
Sbjct: 353 VTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILIN 395



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 111/258 (43%), Gaps = 28/258 (10%)

Query: 137 IILNNMTNPDTAALALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+L+ + +      AL  F    K K   ++ +YN+ +        +D A  LF  +  +
Sbjct: 462 ILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK 521

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV--- 251
           GVKPD  T++ +I         ++A   F +M   G  P+  TY+ +I A+   G+    
Sbjct: 522 GVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKS 581

Query: 252 -----------------EMAFGLYDRARNEKWRIDPNA--FSTLIK---LYGTAGNFDGC 289
                             + F L   AR  K   +P+   F+TL++   L   A  +D  
Sbjct: 582 AKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAP 641

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
             +++ MKA+G KPN++TYN ++  +       QV  +  +M + G  PN  T ++ +  
Sbjct: 642 -TLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISG 700

Query: 350 YGRARYGEDTLSVYREMK 367
             +       + + R+M+
Sbjct: 701 LCKQDLHGSAILLLRKME 718


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 173/393 (44%), Gaps = 50/393 (12%)

Query: 137 IILNNMTNPDTAALALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           ++L+ + + D   +A   F + L    S  V  + V MK      ++D A  L  DM   
Sbjct: 175 VVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKH 234

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G  P++V + TLI     NN  ++A++  E M    C+PD  T++ +I    RAG +  A
Sbjct: 235 GCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEA 294

Query: 255 FGLYDRARNEKWRID-----------------------------PNA--FSTLIKLYGTA 283
             L DR     +  D                             PN   ++TLI  Y  +
Sbjct: 295 AKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTVLYNTLISGYVAS 354

Query: 284 GNFDGCLNV-YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI--YKEMTDNGLSPNW 340
           G F+   ++ Y  M   G +P+  T+N ++D  G  K+ + V  +    EM      PN 
Sbjct: 355 GRFEEAKDLLYNNMVIAGYEPDAYTFNIMID--GLVKKGYLVSALELLNEMVAKRFEPNV 412

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFE 399
            TY  L+  + +    E+   +   M  KG+ L+   YN L+ A+C D G  +EA ++F 
Sbjct: 413 ITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKD-GNIEEALQLFG 471

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +M S + C+PD +TF+S+I       K+ EA +++++M   G   N     +L+  +   
Sbjct: 472 EM-SGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAF--- 527

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
              D + +A   + E+       F GC L+ +T
Sbjct: 528 LMRDSIQQAFKLVDEM------LFRGCPLDNIT 554



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 153/344 (44%), Gaps = 20/344 (5%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKA-ERLFDDMLDRGV 196
           +LN + NP+T                  +LYN  +  +      ++A + L+++M+  G 
Sbjct: 332 LLNKIPNPNT------------------VLYNTLISGYVASGRFEEAKDLLYNNMVIAGY 373

Query: 197 KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256
           +PD  TF+ +I           A+E    M +   +P+ +TY+ +I+ + + G +E A  
Sbjct: 374 EPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAE 433

Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           + +    +   ++   ++ LI      GN +  L ++ EM   G KP++ T+N+L++ + 
Sbjct: 434 IVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLC 493

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +  +  +  ++Y +M   G+  N  TY +L+ A+      +    +  EM  +G  L   
Sbjct: 494 KNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNI 553

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            YN L+      G  ++   +FE+M   +   P   + + +I+     GKV++A     +
Sbjct: 554 TYNGLIKALCKTGAVEKGLGLFEEML-GKGIFPTIISCNILISGLCRTGKVNDALKFLQD 612

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           M+  G  P++    SLI    K     +     N+L   GI PD
Sbjct: 613 MIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPD 656



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 144/320 (45%), Gaps = 6/320 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + + Y   M    +   +D+A  L    L++   P+ V ++TLIS    +    +A +
Sbjct: 307 STDALTYGYLMHGLCRMGQVDEARAL----LNKIPNPNTVLYNTLISGYVASGRFEEAKD 362

Query: 222 W-FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
             +  M   G +PDA T++ MID   + G +  A  L +    +++  +   ++ LI  +
Sbjct: 363 LLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGF 422

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G  +    +   M A G+  N + YN L+  + +     +   ++ EM+  G  P+ 
Sbjct: 423 CKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDI 482

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            T+ SL+    +    E+ LS+Y +M  +G+  +   YNTL+          +AF++ ++
Sbjct: 483 YTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDE 542

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M     C  D+ T++ +I      G V +   +F EML  G  P +     LI    +  
Sbjct: 543 MLF-RGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTG 601

Query: 461 RTDDVVRALNRLPELGITPD 480
           + +D ++ L  +   G+TPD
Sbjct: 602 KVNDALKFLQDMIHRGLTPD 621



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 142/326 (43%), Gaps = 1/326 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N+ +    K   L  A  L ++M+ +  +P+ +T++ LI+         +A E    M 
Sbjct: 380 FNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMS 439

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G   + + Y+ +I A  + GN+E A  L+     +  + D   F++LI         +
Sbjct: 440 AKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKME 499

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L++Y +M   GV  N +TYN L+          Q   +  EM   G   +  TY  L+
Sbjct: 500 EALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLI 559

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           +A  +    E  L ++ EM  KG+  ++   N L++     G  ++A +  +DM      
Sbjct: 560 KALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDM-IHRGL 618

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD  T++S+I      G V EA  +FN++   G  P+     +LI  +      +D   
Sbjct: 619 TPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACL 678

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQ 493
            L +  + G  P++     L+N + +
Sbjct: 679 LLYKGVDSGFIPNEVTWSILINYIVK 704



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 133/321 (41%), Gaps = 39/321 (12%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YNV + +         A  +F DML RGV P   TF  ++    M +  + A      M 
Sbjct: 173 YNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMA 232

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P+++ Y ++I A      V  A                                 
Sbjct: 233 KHGCVPNSVIYQTLIHALCENNRVSEA--------------------------------- 259

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L + E+M  +  +P++ T+N+++  + RA R  +   +   M   G S +  TY  L+
Sbjct: 260 --LQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLM 317

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             +G  R G+  +   R +  K    +  LYNTL++     G  +EA ++  +       
Sbjct: 318 --HGLCRMGQ--VDEARALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGY 373

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD++TF+ MI     +G +  A  + NEM+   FEPN+   T LI  + K  R ++   
Sbjct: 374 EPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAE 433

Query: 468 ALNRLPELGITPDDRFCGCLL 488
            +N +   G++ +     CL+
Sbjct: 434 IVNSMSAKGLSLNTVGYNCLI 454



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 103/234 (44%), Gaps = 2/234 (0%)

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI- 299
           +ID  G  G+ ++   L  + ++E      + F  ++K YG AG       +  +M  + 
Sbjct: 105 LIDKLGAVGDFKVIEKLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVY 164

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
              P   +YN +LD +     P     ++ +M   G+SP   T+  +++A       +  
Sbjct: 165 SCDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSA 224

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
            S+ R+M + G   +  +Y TL+    +     EA ++ EDM     C+PD  TF+ +I 
Sbjct: 225 CSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDM-FLMCCEPDVQTFNDVIH 283

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
                G++ EA  + + ML  GF  +      L+    +  + D+    LN++P
Sbjct: 284 GLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIP 337



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 90/161 (55%), Gaps = 3/161 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I YN  +K   K   ++K   LF++ML +G+ P  ++ + LIS        N A+++ + 
Sbjct: 553 ITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQD 612

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  PD +TY+S+I+   + G+V+ A  L+++ ++E  R D   ++TLI  +   G 
Sbjct: 613 MIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGM 672

Query: 286 F-DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           F D CL +Y+ + + G  PN +T++ L++ + + K PW  +
Sbjct: 673 FNDACLLLYKGVDS-GFIPNEVTWSILINYIVK-KIPWGAR 711


>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 942

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 165/356 (46%), Gaps = 5/356 (1%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           C+I L       + AL ++    +      +  Y++ +  F K +D   A  +F+DM+  
Sbjct: 490 CLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKE 549

Query: 195 GVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           G+KPD + ++ +I+  C  M N+ ++A++  + M      P   T+  +I+ + ++G++ 
Sbjct: 550 GMKPDVILYNNIIAAFCG-MGNM-DRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGDMR 607

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            +  ++D  R        + F+ LI         +  + + +EM   GV  N  TY  ++
Sbjct: 608 RSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIM 667

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                     +    +  + + GL  +  TY +LL+A  ++   +  L+V +EM  + + 
Sbjct: 668 QGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIP 727

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +  +YN L+   A  G   EA ++ + MK  E  +PD  T++S I+ CS  G ++ A  
Sbjct: 728 RNSFVYNILIDGWARRGDVWEAADLIQQMKK-EGVKPDIHTYTSFISACSKAGDMNRATQ 786

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
              EM   G +PN+   T+LI+ + +A   +  +     +  +G+ PD     CLL
Sbjct: 787 TIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAVGLKPDKAVYHCLL 842



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 157/374 (41%), Gaps = 10/374 (2%)

Query: 93  KSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALAL 152
           K+Y    N  VKL    ++ +  ED V   ++   D  L  + +     M N D A   +
Sbjct: 521 KTYSMMINGFVKLKDWANAFAVFEDMVKEGMKP--DVILYNNIIAAFCGMGNMDRAIQTV 578

Query: 153 TYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARM 212
                KL+       +   +  F K  D+ ++  +FD M   G  P   TF+ LI+    
Sbjct: 579 KEM-QKLRHRPTTRTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVE 637

Query: 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
                KAVE  + M   G   +  TY+ ++  Y   G+   AF  + R +NE   +D   
Sbjct: 638 KRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFT 697

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           +  L+K    +G     L V +EM A  +  N   YN L+D   R    W+   + ++M 
Sbjct: 698 YEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK 757

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             G+ P+ +TY S + A  +A           EM+  G++ ++  Y TL+   A     +
Sbjct: 758 KEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPE 817

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA------EAMFNEMLEAGFEPNL 446
           +A   +E+MK+    +PD   +  ++T    R  ++EA        +  EM+EAG   ++
Sbjct: 818 KALSCYEEMKAV-GLKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDM 876

Query: 447 FVLTSLIQCYGKAQ 460
                  +C  K +
Sbjct: 877 GTAVHWSRCLCKIE 890



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 151/350 (43%), Gaps = 12/350 (3%)

Query: 143 TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVT 202
           TN D     ++ F    K S+    + + +K + +  D+ +A   F+ M  RG+ P +  
Sbjct: 290 TNGDNWQAVISAFEKINKPSR--TEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRI 347

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           +++LI    +     +A+    +M   G +   +TYS ++  + +AGN E A   +D A+
Sbjct: 348 YTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGNAEAADHWFDEAK 407

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
                ++ + +  +I  +    N +    +  EM+  G+   +  Y+ ++D         
Sbjct: 408 RIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEK 467

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +   ++K + + G +P   TY  L+  Y +       L V R MKE+G++ ++  Y+ ++
Sbjct: 468 KGLIVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMI 527

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
                +     AF +FEDM   E  +PD   ++++I      G +  A     EM +   
Sbjct: 528 NGFVKLKDWANAFAVFEDM-VKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRH 586

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            P       +I  + K   + D+ R+L     +      R CGC+  V T
Sbjct: 587 RPTTRTFMPIINGFAK---SGDMRRSLEVFDMM------RRCGCVPTVHT 627



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 83/404 (20%), Positives = 166/404 (41%), Gaps = 41/404 (10%)

Query: 117 DDVFSVLRCLGDDFLEQDCV---IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMK 173
           ++  S +R + ++ +E   V   +I+   +    A  A  +F    +  K +        
Sbjct: 362 EEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGNAEAADHWFDEAKRIHKTLNASIYGKI 421

Query: 174 VFRKCR--DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
           ++  C+  ++++AE L  +M + G+      + T++    M     K +  F+R+   G 
Sbjct: 422 IYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLIVFKRLKECGF 481

Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
            P  +TY  +I+ Y + G +  A  +    + E  + +   +S +I  +    ++     
Sbjct: 482 TPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFA 541

Query: 292 VYEEMKAIGVKPNMITYNNLLDT---MGRAKRPWQ-VKT--------------------- 326
           V+E+M   G+KP++I YNN++     MG   R  Q VK                      
Sbjct: 542 VFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFA 601

Query: 327 ----------IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
                     ++  M   G  P  +T+ +L+      R  E  + +  EM   G+  +  
Sbjct: 602 KSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEH 661

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            Y  ++   A VG T +AFE F  ++ +E  + D +T+ +++  C   G++  A A+  E
Sbjct: 662 TYTKIMQGYASVGDTGKAFEYFTRLQ-NEGLEVDIFTYEALLKACCKSGRMQSALAVTKE 720

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           M       N FV   LI  + +     +    + ++ + G+ PD
Sbjct: 721 MSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPD 764


>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
 gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
          Length = 637

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 163/342 (47%), Gaps = 5/342 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +++  K     K    FD+M+ +G   + + F+T+I     N + +K +    +M 
Sbjct: 259 YTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMV 318

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C P+  TYS  +D     G +     + D       R   + +S L+K    +G+  
Sbjct: 319 ENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNR---SIYSYLVKSLCKSGHAS 375

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              NV+  M     K +   + ++L+ +  A++  +   +   M + G+  +   Y  + 
Sbjct: 376 EAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVF 435

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A G+ +      +++ +MK  G+   V  YN +++    VG  D+A E+FE M++S +C
Sbjct: 436 SALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEAS-SC 494

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD  T++S+I      G + EA  +F EM E G++P++F  + LI+C+GK+ + +    
Sbjct: 495 KPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACS 554

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 508
             + +   G TP+      LL+ + +  K EE  KL E +++
Sbjct: 555 LFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQ 596



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 103/191 (53%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V +YN+      K + +     LFD M   G+ PD  T++ +IS      L +KA E F
Sbjct: 427 DVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELF 486

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M +  C PD +TY+S+I+  G+ G+++ A  L+   + + +  D   +S LI+ +G +
Sbjct: 487 EVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKS 546

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              +   ++++EM + G  PN++TYN LLD + R  +  +   +Y+ M   GL P+  TY
Sbjct: 547 NKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITY 606

Query: 344 ASLLRAYGRAR 354
           + L R   R++
Sbjct: 607 SILERLESRSQ 617



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 139/313 (44%), Gaps = 19/313 (6%)

Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFT--------NKLKASKEVI------ 166
           +++  LG + +    + +L+ M   D      TY           +L    EV+      
Sbjct: 296 TIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRF 355

Query: 167 ----LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
               +Y+  +K   K     +A  +F  M +   K D   F +++          +A++ 
Sbjct: 356 MNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDL 415

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
              MP  G   D   Y+ +  A G+   V     L+D+ +      D   ++ +I  YG 
Sbjct: 416 LHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGR 475

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G  D    ++E M+A   KP+++TYN+L++ +G+     +   ++KEM + G  P+  T
Sbjct: 476 VGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFT 535

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y+ L+  +G++   E   S++ EM  +G   ++  YN LL      G T+EA +++E MK
Sbjct: 536 YSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMK 595

Query: 403 SSENCQPDSWTFS 415
             +   PDS T+S
Sbjct: 596 -QQGLIPDSITYS 607



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 130/289 (44%), Gaps = 10/289 (3%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G++    T+  ++     +   +K  + +E M   G   D   Y+ ++DA  +AG V+ A
Sbjct: 181 GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQA 240

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
           F +++  + +    D   ++ LI++ G AG     L+ ++EM + G   N+I +N +++ 
Sbjct: 241 FQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEA 300

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYA---SLLRAYGRARYGEDTLSVYREMKEKGM 371
           +G+ K   +V  +  +M +N   PN  TY+    +L   G+     + L +      +  
Sbjct: 301 LGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNR-- 358

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
               ++Y+ L+      G+  EA  +F  M +S   + D   F SM+ +     K  EA 
Sbjct: 359 ----SIYSYLVKSLCKSGHASEAHNVFCRMWNSHE-KGDRDAFVSMLEVLCNAEKTLEAI 413

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            + + M E G   ++ +   +    GK ++   +    +++   GI PD
Sbjct: 414 DLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPD 462



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 99/199 (49%), Gaps = 8/199 (4%)

Query: 187 LFDDMLDRGVKPD----NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           L   M ++G+  D    N+ FS L    +++ + N     F++M + G  PD  TY+ MI
Sbjct: 415 LLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISN----LFDKMKTNGIIPDVFTYNIMI 470

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            +YGR G V+ A  L++       + D   +++LI   G  G+ D    +++EM+  G  
Sbjct: 471 SSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYD 530

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P++ TY+ L++  G++ +     +++ EM   G +PN  TY  LL    R    E+   +
Sbjct: 531 PDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKL 590

Query: 363 YREMKEKGMQLSVTLYNTL 381
           Y  MK++G+      Y+ L
Sbjct: 591 YETMKQQGLIPDSITYSIL 609



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 132/308 (42%), Gaps = 9/308 (2%)

Query: 174 VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDP 233
           +FR      +A RL  DM   GV  +  T + L+          + +E   +   +G   
Sbjct: 128 LFRTRAGPSEALRLVADMERDGVAGNISTINLLVGMGGGGVEMERCLELASK---WGLRL 184

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
              TY  ++ A+ R+  V   F +Y+  R + +++D  A++ L+     AG  D    V+
Sbjct: 185 SGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVF 244

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
           E+MK     P+  TY  L+   G+A R  +  + + EM   G   N   + +++ A G+ 
Sbjct: 245 EDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKN 304

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
           +  +  + V  +M E   Q +   Y+  L + A  G      E+ +      N    S+ 
Sbjct: 305 KMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYL 364

Query: 414 FSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
             S+     C+ G  SEA  +F  M  +  + +     S+++    A++T + +  L+ +
Sbjct: 365 VKSL-----CKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMM 419

Query: 473 PELGITPD 480
           PE GI  D
Sbjct: 420 PEKGIVTD 427


>gi|255661194|gb|ACU25766.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 426

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 173/378 (45%), Gaps = 39/378 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++LY+  +++ RK  D  KA  +F  +   G  PD V ++++I+      L  +A    
Sbjct: 43  DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFAPDLVAYNSMINVFXKAKLFREARSLI 102

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M + G  PD ++Y++++  +        A  ++   R  K  +D    + +I +YG  
Sbjct: 103 NEMRTAGVMPDTVSYTTLLTMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQL 162

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       ++  M+ IG++PN+++YN LL   G A+   +   +++ M    +  N  TY
Sbjct: 163 GMAKEADKLFWGMRKIGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S++  YG+    E   ++ +EM+ +G++ +   Y+T++++   VG  D A  +F+ +++
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWVKVGKLDRAAMLFQKLRN 282

Query: 404 S------------------------------ENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           S                              E  +PD+    + I I +  G++ EA  +
Sbjct: 283 SGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAAAGRLEEATWV 342

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           F + ++AG   ++ V   LI  + K ++  +VV   +++ E    PD      +LN    
Sbjct: 343 FRQAIDAGEVKDITVFERLIHLFSKYKKYSNVVEVFDKMRERRYFPDSNVIALVLNA--- 399

Query: 494 TPKEELGKLVECVEKSNS 511
                 GKL E  EK+NS
Sbjct: 400 -----YGKLHE-FEKANS 411



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y+SMI+ + +A     A  L +  R      D  +++TL+ ++     F 
Sbjct: 72  RSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVENKRFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWVKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 151/317 (47%), Gaps = 8/317 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y+  +  F K  DLDK       MLD+ + P+ VT++++I+        +KA+E  
Sbjct: 87  DVVSYSTVINGFFKEGDLDK-------MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVL 139

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  PD +TY+S++  +  +G  + A     + R++    D   +++L+      
Sbjct: 140 TTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKN 199

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       +++ M   G+KP++ TY  LL          ++  +   M  NG+ PN   +
Sbjct: 200 GRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 259

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+ AY +    E+ + V+ +M+++G+  +   Y T++ +    G  ++A   FE M  
Sbjct: 260 SILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQM-I 318

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            E  +PDS  ++S+I       K  +AE +F EML+ G   +     S+I  + K  R  
Sbjct: 319 DEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVI 378

Query: 464 DVVRALNRLPELGITPD 480
           +  +  + +  +G+ PD
Sbjct: 379 ESGKLFDLMVRIGVKPD 395



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 145/303 (47%), Gaps = 15/303 (4%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG--CDPDALTYS 239
           + A  +FD++L RG+ PD  +++ L++     N   +A+E    M   G  C PD ++YS
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMK 297
           ++I+ + + G+++              RI PN   ++++I     A   D  + V   M 
Sbjct: 93  TVINGFFKEGDLDKML---------DQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMV 143

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
             GV P+ +TYN+++     + +P +     K+M  +G+ P+  TY SL+    +     
Sbjct: 144 KSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCT 203

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           +   ++  M ++G++  +T Y TLL   A  G   E   +  D+       P+ + FS +
Sbjct: 204 EARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIHPNHYVFSIL 262

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           +   + + KV EA  +F++M + G  PN     ++I    K+ R +D +    ++ + G+
Sbjct: 263 VCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGL 322

Query: 478 TPD 480
            PD
Sbjct: 323 RPD 325


>gi|359487410|ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Vitis vinifera]
          Length = 538

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 139/278 (50%), Gaps = 6/278 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC---ARMNNLPNKAV 220
           +V  Y++ +K        D  ER+F +M   G++   VT++T+I     A M  L   ++
Sbjct: 198 DVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELMESSL 257

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
              E + S  C PD  T +S I AYG +G +E     YD  +    R D   F+ LI+ Y
Sbjct: 258 T--EMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRSY 315

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           G A  ++  ++V E MK     P ++T+N +++  GR     +++  + +M   G+ PN 
Sbjct: 316 GKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNS 375

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY SL+ AY +A Y +   S+ R+++   + L    +N +L+     G  +   E+F  
Sbjct: 376 ITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLV 435

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           MK    C+PD+ TF++MI   + +G +  A+ +   M+
Sbjct: 436 MK-ERKCKPDNITFATMIQAYNAQGMIEAAQNLEVNMI 472



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 139/309 (44%), Gaps = 4/309 (1%)

Query: 197 KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF- 255
           +P   T++ L+        P +A   FE M S G  P    Y++++ AYG +G ++ AF 
Sbjct: 125 EPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGHSGQLDKAFC 184

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            + D       + D   +S LIK   T G FD    ++ EM  +G++ + +TYN ++D  
Sbjct: 185 TVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVTYNTIIDGY 244

Query: 316 GRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           G+A     +++   EM ++G   P+  T  S + AYG +   E     Y E +  G++  
Sbjct: 245 GKADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQLMGIRPD 304

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           +  +N L+         ++   + E MK      P   TF+ +I +    G + + E  F
Sbjct: 305 IKTFNILIRSYGKACMYEKMVSVMEFMKK-RFYSPTIVTFNIVIEMFGRVGNIEKMEEFF 363

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
            +M   G +PN     SL+  Y KA     V   L ++    +T D  F  C+L+   Q 
Sbjct: 364 LKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQA 423

Query: 495 PK-EELGKL 502
              E +G+L
Sbjct: 424 GDVERMGEL 432


>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 163/345 (47%), Gaps = 27/345 (7%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +++  +     K    FD+M+ +G   + + ++TLI     N + +K +    +M 
Sbjct: 259 YTILIRMSGRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVIFVLSKMI 318

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEM---AFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
             GC P+  TYS  +D   + G +        + DR  N+      + +S L+K    +G
Sbjct: 319 EGGCQPNQFTYSITLDILAKEGQLHRLNEVLDICDRYMNK------SIYSYLVKSLSKSG 372

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           +     NV+ +M       +   + ++L+ +  + +  +   +   M + G++ +   Y 
Sbjct: 373 HVSEAHNVFCQMWNSYETGDRDAFVSMLEVLCNSGKTLEAIDLLHMMPEKGVATDVGMYN 432

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            +  A G+ +      S++ +MK  G+   +  YN +++    VG  D+A  +FEDM +S
Sbjct: 433 MVFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNAS 492

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            +C+PD  T++S+I      G + EA  +F EM E G+ P++F  + LI+C+GK+ + D 
Sbjct: 493 -SCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDM 551

Query: 465 VVRA-LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 508
                L+ + E          GC+ NV+T         L++C+E+
Sbjct: 552 ACNLFLDMIAE----------GCIPNVVTYN------ILLDCLER 580



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 168/348 (48%), Gaps = 10/348 (2%)

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL-YGTAGNFDGCLNVYEEMK 297
           S ++ A      + +AF  +  A    +R D  +++ ++ L + T  +    L +  EM+
Sbjct: 87  SEIVKALSPNPALALAFFRFAPASFPGFRHDAFSYNRILALLFRTRADPSEALRIVSEME 146

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
             GV  N+ T N L+   G      +   +  +    GL  N  TY  +L+A+ R+R   
Sbjct: 147 RDGVSGNISTVNLLVGIGGGGVEVTKCLELAMKW---GLRLNGYTYKCILQAHLRSREVS 203

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
               VY EM+ KG  L +  YN LL   A  G  D+A+++FEDMK  + C+PD++T++ +
Sbjct: 204 KGFEVYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQ-KYCEPDAYTYTIL 262

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I +    GK S+  + F+EM+  G   NL    +LI+  GK +  D V+  L+++ E G 
Sbjct: 263 IRMSGRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVIFVLSKMIEGGC 322

Query: 478 TPDDRFCGCLLNVMTQTPK-EELGKLVECVEK--SNSKLGYVVKLLLEEQDIEGDFKKEA 534
            P+       L+++ +  +   L ++++  ++  + S   Y+VK L +   +  +     
Sbjct: 323 QPNQFTYSITLDILAKEGQLHRLNEVLDICDRYMNKSIYSYLVKSLSKSGHVS-EAHNVF 381

Query: 535 TELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 582
            +++NS     + A+ + L  LC +   LE A  LL +     V TD+
Sbjct: 382 CQMWNSYETGDRDAFVSMLEVLCNSGKTLE-AIDLLHMMPEKGVATDV 428



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 106/206 (51%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L +   +   + +V +YN+      K + +     LFD M   G+ PD  T++ +IS
Sbjct: 412 AIDLLHMMPEKGVATDVGMYNMVFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMIS 471

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 L +KA   FE M +  C PD +TY+S+I+  G+ G+++ A  L+   + + +  
Sbjct: 472 SYGRVGLVDKASGLFEDMNASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGP 531

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   +S LI+ +G +   D   N++ +M A G  PN++TYN LLD + R  +  +    Y
Sbjct: 532 DVFTYSILIECFGKSNKVDMACNLFLDMIAEGCIPNVVTYNILLDCLERHGKTAEAHKHY 591

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRAR 354
           + M   GL+P+  T + L R   R++
Sbjct: 592 ETMKQQGLTPDSITCSILERLESRSQ 617



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 117/249 (46%), Gaps = 1/249 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y+  +K   K   + +A  +F  M +     D   F +++     +    +A++    M
Sbjct: 360 IYSYLVKSLSKSGHVSEAHNVFCQMWNSYETGDRDAFVSMLEVLCNSGKTLEAIDLLHMM 419

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
           P  G   D   Y+ +  A G+   V     L+D+ +      D   ++ +I  YG  G  
Sbjct: 420 PEKGVATDVGMYNMVFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMISSYGRVGLV 479

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    ++E+M A   KP++ITYN+L++ +G+     +   ++KEM + G  P+  TY+ L
Sbjct: 480 DKASGLFEDMNASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSIL 539

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  +G++   +   +++ +M  +G   +V  YN LL      G T EA + +E MK  + 
Sbjct: 540 IECFGKSNKVDMACNLFLDMIAEGCIPNVVTYNILLDCLERHGKTAEAHKHYETMK-QQG 598

Query: 407 CQPDSWTFS 415
             PDS T S
Sbjct: 599 LTPDSITCS 607



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 132/289 (45%), Gaps = 10/289 (3%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G++ +  T+  ++     +   +K  E +E M   G   D   Y+ ++DA  ++G V+ A
Sbjct: 181 GLRLNGYTYKCILQAHLRSREVSKGFEVYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQA 240

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
           + +++  + +    D   ++ LI++ G AG     L+ ++EM + G   N+I YN L++ 
Sbjct: 241 YQVFEDMKQKYCEPDAYTYTILIRMSGRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEA 300

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYA---SLLRAYGRARYGEDTLSVYREMKEKGM 371
           +G+ K   +V  +  +M + G  PN  TY+    +L   G+     + L +      K  
Sbjct: 301 LGKNKMVDKVIFVLSKMIEGGCQPNQFTYSITLDILAKEGQLHRLNEVLDICDRYMNK-- 358

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
               ++Y+ L+   +  G+  EA  +F  M +S     D   F SM+ +    GK  EA 
Sbjct: 359 ----SIYSYLVKSLSKSGHVSEAHNVFCQMWNSYETG-DRDAFVSMLEVLCNSGKTLEAI 413

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            + + M E G   ++ +   +    GK ++   +    +++   GI PD
Sbjct: 414 DLLHMMPEKGVATDVGMYNMVFSALGKLKQVSFITSLFDKMKANGIAPD 462



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 134/307 (43%), Gaps = 7/307 (2%)

Query: 174 VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDP 233
           +FR   D  +A R+  +M   GV  +  T + L+          K +E   +   +G   
Sbjct: 128 LFRTRADPSEALRIVSEMERDGVSGNISTVNLLVGIGGGGVEVTKCLELAMK---WGLRL 184

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           +  TY  ++ A+ R+  V   F +Y+  R + + +D   ++ L+     +G  D    V+
Sbjct: 185 NGYTYKCILQAHLRSREVSKGFEVYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVF 244

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
           E+MK    +P+  TY  L+   GRA +  +  + + EM   G + N   Y +L+ A G+ 
Sbjct: 245 EDMKQKYCEPDAYTYTILIRMSGRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEALGKN 304

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
           +  +  + V  +M E G Q +   Y+  L + A  G      E+ +      N       
Sbjct: 305 KMVDKVIFVLSKMIEGGCQPNQFTYSITLDILAKEGQLHRLNEVLDICDRYMN----KSI 360

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           +S ++   S  G VSEA  +F +M  +    +     S+++    + +T + +  L+ +P
Sbjct: 361 YSYLVKSLSKSGHVSEAHNVFCQMWNSYETGDRDAFVSMLEVLCNSGKTLEAIDLLHMMP 420

Query: 474 ELGITPD 480
           E G+  D
Sbjct: 421 EKGVATD 427


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 174/397 (43%), Gaps = 49/397 (12%)

Query: 144 NPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDN 200
           +P ++A A  +  + L A     +   +N  +    +  DL    +LF  M D  V+P+ 
Sbjct: 113 SPSSSADAARFLRDSLAAGAPPPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNV 172

Query: 201 VTFSTLIS----------------------------CARMNNLPN---------KAVEWF 223
           VT+  L+                                +NN+ +         +AV++ 
Sbjct: 173 VTYGILVKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFV 232

Query: 224 -ERMPSF-GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKL 279
            ERM S  GC P+ +TY+ +  A+ RAGNV MA  L   A+ EK R+ PNA   +T++  
Sbjct: 233 EERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELV--AKMEKERVTPNAVTLNTIVGG 290

Query: 280 YGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
               G     L  + E + +    + N +TY+ L+              ++ EM D G S
Sbjct: 291 LCWVGRVGAALEFFREKRTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNS 350

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P+   Y +++    +A   +D  S+   MK+ G QL    YN L+         +EA+E+
Sbjct: 351 PDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYEL 410

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
             +MK +   QPD +T++++++     G     + +  +M++ G  P++    +LI  Y 
Sbjct: 411 LGEMKEA-GLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYC 469

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           K  + D+ +R    + E GI P+      L++ + ++
Sbjct: 470 KVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKS 506



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 124/254 (48%), Gaps = 1/254 (0%)

Query: 201 VTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR 260
           VT+STL+      N    A+E F  M   G  PDA+ Y +MI    +AG ++ A+ +   
Sbjct: 319 VTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATS 378

Query: 261 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
            +   +++D  A++ LI  +      +    +  EMK  G++P++ TYN LL  + +A  
Sbjct: 379 MKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGD 438

Query: 321 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 380
              V  +  +M D G  P+  T+ +L+  Y +    ++ L ++R M E G+Q +  +YNT
Sbjct: 439 FLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNT 498

Query: 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
           L+        T  A E+F++M+  ++   +  TF++++     +    +A  + + M E 
Sbjct: 499 LIDFLCKSRDTSLAIELFDEMR-EKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREG 557

Query: 441 GFEPNLFVLTSLIQ 454
              P+   +  L++
Sbjct: 558 RCTPDYVTIDILME 571



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 159/359 (44%), Gaps = 19/359 (5%)

Query: 136 VIILNNMTNP--DTAAL--ALTYFTNKLKA----SKEVILYNVTMKVFRKCRDLDKAERL 187
           V++LNN+ +    T  L  A+ +   ++++    +   + YN     F +  ++  A  L
Sbjct: 209 VVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACEL 268

Query: 188 FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDP--DALTYSSMIDAY 245
              M    V P+ VT +T++           A+E+F    +   +   +A+TYS+++ A+
Sbjct: 269 VAKMEKERVTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWPEARGNAVTYSTLVGAF 328

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
               NV +A  L+    +E    D   + T+I     AG  D   ++   MK  G + + 
Sbjct: 329 LHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDA 388

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV--- 362
             YN L+    R KR  +   +  EM + GL P+  TY +LL    +A    D L+V   
Sbjct: 389 KAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKA---GDFLAVDEL 445

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-IC 421
             +M + G + SV  + TL+     VG  DEA  IF  M  S   QP++  ++++I  +C
Sbjct: 446 LGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDES-GIQPNTVIYNTLIDFLC 504

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             R   S A  +F+EM E     N+    +L++        +     ++ + E   TPD
Sbjct: 505 KSR-DTSLAIELFDEMREKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREGRCTPD 562



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++YN  +    K RD   A  LFD+M ++ V  +  TF+ L+   R  N+P KA E  + 
Sbjct: 494 VIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVTTFNALLKGLRDKNMPEKAFELMDL 553

Query: 226 MPSFGCDPDALTYSSMID 243
           M    C PD +T   +++
Sbjct: 554 MREGRCTPDYVTIDILME 571



 Score = 40.4 bits (93), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 54/123 (43%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ +   +  + K   +D+A R+F  M + G++P+ V ++TLI     +   + A+E F+
Sbjct: 458 VVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFD 517

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M       +  T+++++         E AF L D  R  +   D      L++     G
Sbjct: 518 EMREKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREGRCTPDYVTIDILMEWLPVIG 577

Query: 285 NFD 287
             D
Sbjct: 578 ETD 580


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 151/317 (47%), Gaps = 8/317 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y+  +  F K  DLDK       MLD+ + P+ VT++++I+        +KA+E  
Sbjct: 87  DVVSYSTVINGFFKEGDLDK-------MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVL 139

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  PD +TY+S++  +  +G  + A     + R++    D   +++L+      
Sbjct: 140 TTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKN 199

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       +++ M   G+KP++ TY  LL          ++  +   M  NG+ PN   +
Sbjct: 200 GRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 259

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+ AY +    E+ + V+ +M+++G+  +   Y T++ +    G  ++A   FE M  
Sbjct: 260 SILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQM-I 318

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            E  +PDS  ++S+I       K  +AE +F EML+ G   +     S+I  + K  R  
Sbjct: 319 DEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVI 378

Query: 464 DVVRALNRLPELGITPD 480
           +  +  + +  +G+ PD
Sbjct: 379 ESGKLFDLMVRIGVKPD 395



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 148/303 (48%), Gaps = 15/303 (4%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG--CDPDALTYS 239
           + A  +FD++L RG+ PD  +++ L++     N   +A+E    M   G  C PD ++YS
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMK 297
           ++I+ + + G++       D+  ++  RI PN   ++++I     A   D  + V   M 
Sbjct: 93  TVINGFFKEGDL-------DKMLDQ--RISPNVVTYNSIIAALCKAQTVDKAMEVLTTMV 143

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
             GV P+ +TYN+++     + +P +     K+M  +G+ P+  TY SL+    +     
Sbjct: 144 KSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCT 203

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           +   ++  M ++G++  +T Y TLL   A  G   E   +  D+       P+ + FS +
Sbjct: 204 EARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIHPNHYVFSIL 262

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           +   + + KV EA  +F++M + G  PN     ++I    K+ R +D +    ++ + G+
Sbjct: 263 VCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGL 322

Query: 478 TPD 480
            PD
Sbjct: 323 RPD 325


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 150/322 (46%), Gaps = 1/322 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N+ M+   +   L  A  +FD+ML RGV P  VTF+TL+S     +  N A      M 
Sbjct: 247 FNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLMA 306

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD  TY + +    +AG ++ A  +++  R      +   F+TLI  +   GN  
Sbjct: 307 KAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVA 366

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L ++ EM   G+K +++ YN L + + R +       I +EM +NGL P+  TY +L+
Sbjct: 367 AGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLI 426

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             + +    +  + + +EM ++G+ L    Y TL++  +  G + ++  I  +M  +   
Sbjct: 427 DGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEA-GL 485

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD+ T++ +I        V     +  EM   G +P +     ++  +    +  +   
Sbjct: 486 EPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADM 545

Query: 468 ALNRLPELGITPDDRFCGCLLN 489
            LN +  +G+ PDD     LL+
Sbjct: 546 LLNAMLNIGVCPDDITYNILLD 567



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 142/315 (45%), Gaps = 4/315 (1%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           +A AL     K   + +V  Y   M+   K   +  A  +F++M +RGV P+ V F+TLI
Sbjct: 297 SANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLI 356

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
                       +E    M + G   D + Y+++ +   R  +++ A  + +  RN   +
Sbjct: 357 DAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLK 416

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   ++TLI  +   G  D  + + +EM   GV  + +TY  L+  + ++ R    + I
Sbjct: 417 PDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERI 476

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
             EM + GL P+  TY  ++ A+ +    +    + +EM+ KG +  V  YN ++     
Sbjct: 477 LCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCI 536

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           +G    A  +   M +   C PD  T++ ++      GKV +AE + +     G   +  
Sbjct: 537 LGQMKNADMLLNAMLNIGVC-PDDITYNILLDGHCKHGKVRDAEELKS---AKGMVSDFG 592

Query: 448 VLTSLIQCYGKAQRT 462
           + TSLI  + K + T
Sbjct: 593 LYTSLINEFVKKKST 607



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 157/349 (44%), Gaps = 12/349 (3%)

Query: 137 IILNNMTNPDTAALALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           +++ +M      A A   F   L+      V+ +N  M    K  DL+ A  L   M   
Sbjct: 249 MLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLMAKA 308

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           GV PD  T+   +           AVE FE M   G +P+ + ++++IDA+ + GNV   
Sbjct: 309 GVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAG 368

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             L+        + D  A++ L        +     ++ EEM+  G+KP+ +TY  L+D 
Sbjct: 369 LELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDG 428

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
             +         + +EM+D G++ +  TY +L+    ++    D+  +  EM E G++  
Sbjct: 429 FCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPD 488

Query: 375 VTLYNTLL-AMC--ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
            T Y  ++ A C  +DV      F++ ++M+ ++  +P   T++ ++      G++  A+
Sbjct: 489 NTTYTMVIDAFCKNSDV---KTGFKLLKEMQ-NKGRKPGVVTYNVVMNGFCILGQMKNAD 544

Query: 432 AMFNEMLEAGFEPNLFVLTSLI--QC-YGKAQRTDDVVRALNRLPELGI 477
            + N ML  G  P+      L+   C +GK +  +++  A   + + G+
Sbjct: 545 MLLNAMLNIGVCPDDITYNILLDGHCKHGKVRDAEELKSAKGMVSDFGL 593



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/346 (20%), Positives = 149/346 (43%), Gaps = 11/346 (3%)

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
           D   R  +V  A+  Y +  +     +   F+ L++    +G      N+++EM   GV 
Sbjct: 217 DLMNRLPSVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVP 276

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P ++T+N L+  M +A        +   M   G++P+  TY + ++   +A   +D + +
Sbjct: 277 PTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEM 336

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-IC 421
           + EM+E+G+  +  ++ TL+      G      E+  +M ++   + D   ++++   +C
Sbjct: 337 FEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREM-ATRGIKTDLVAYNALANGLC 395

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
             R  +  A  +  EM   G +P+    T+LI  + K    D  +     + + G+  D+
Sbjct: 396 RVR-DLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDE 454

Query: 482 RFCGCLLNVMTQTPKEELGKLVEC------VEKSNSKLGYVVKLLLEEQDIEGDFKKEAT 535
                L++ ++++ +    + + C      +E  N+    V+    +  D++  FK    
Sbjct: 455 VTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKL-LK 513

Query: 536 ELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 581
           E+ N   K     Y   +   C+ L  ++NA  LL   L + V  D
Sbjct: 514 EMQNKGRKPGVVTYNVVMNGFCI-LGQMKNADMLLNAMLNIGVCPD 558


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 156/332 (46%), Gaps = 1/332 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L Y    +  S  V+ YN  +          +A  LF +ML+  +KPD VTFS L+ 
Sbjct: 263 AVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVD 322

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 +  +A+  F +M     +PD +TYSS+I    ++   + +  L +   +   R 
Sbjct: 323 ALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRP 382

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   FS  + ++   G      ++   M   G++PN++TYN+L+D      +  + + ++
Sbjct: 383 DVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVF 442

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             M + G +P+  +Y  L++ Y ++   ++   ++ EM  KG+  +   + TL++     
Sbjct: 443 DIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQA 502

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G    A E+F+ M  S  C PD  T+S++++     G + EA A+F  + ++  +PN  +
Sbjct: 503 GRPYAAKELFKKM-GSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVI 561

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
              L+    KA + +D     + L    + PD
Sbjct: 562 CKILLGGMCKAGKLEDAKELFSSLSIEELQPD 593



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 170/354 (48%), Gaps = 4/354 (1%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           M++   +P+ V++S +I     N L N+AV+ F  M S G  P  +TY+S+I     +G 
Sbjct: 235 MVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQ 294

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
            + A  L+        + D   FS L+      G     L+V+ +M  I ++P+++TY++
Sbjct: 295 WKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSS 354

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L+  + ++    +  T+  EM    + P+  T++  +  + +     +  S+   M E+G
Sbjct: 355 LIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERG 414

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 430
           ++ +V  YN+L+         DEA ++F D+  ++ C PD  +++ +I       ++ EA
Sbjct: 415 LRPNVVTYNSLMDGYCLHSQMDEARKVF-DIMVNKGCAPDVLSYNILIKGYCKSERIDEA 473

Query: 431 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
           + +F+EM   G  PN    T+LI    +A R         ++   G  PD      LL+ 
Sbjct: 474 KQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSG 533

Query: 491 MTQTPK-EELGKLVECVEKSNSKLGYVV-KLLLEEQDIEGDFKKEATELFNSIS 542
             +    +E   L E ++KS  K  +V+ K+LL      G   ++A ELF+S+S
Sbjct: 534 FCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKL-EDAKELFSSLS 586



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 138/276 (50%), Gaps = 3/276 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+++ +        AL+ F   ++ + E  ++ Y+  +    K     ++  L ++ML R
Sbjct: 319 ILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSR 378

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
            ++PD VTFS  +       + ++A      M   G  P+ +TY+S++D Y     ++ A
Sbjct: 379 NIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEA 438

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             ++D   N+    D  +++ LIK Y  +   D    +++EM   G+ PN IT+  L+  
Sbjct: 439 RKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISG 498

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           + +A RP+  K ++K+M  +G  P+  TY++LL  + +  + ++ L+++  +K+  ++ +
Sbjct: 499 LCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPN 558

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
             +   LL      G  ++A E+F  + S E  QPD
Sbjct: 559 HVICKILLGGMCKAGKLEDAKELFSSL-SIEELQPD 593



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/369 (20%), Positives = 148/369 (40%), Gaps = 42/369 (11%)

Query: 151 ALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL YF   +  +    +  +N  +    + +  D    ++  M   GV     T + LI+
Sbjct: 88  ALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILIN 147

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           C    +L         ++   G  P  +T++++I+     G +  A    D   +  ++ 
Sbjct: 148 CLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQP 207

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
                + ++      G     +   ++M  +  +P +++Y+ ++D++ + +   +   ++
Sbjct: 208 TVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLF 267

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGE--DTLSVYREMKEKGMQLSVTLYNTLL-AMC 385
             M   G+SP   TY SL+  YG    G+      +++EM E  M+  V  ++ L+ A+C
Sbjct: 268 YHMRSIGISPTVVTYNSLI--YGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALC 325

Query: 386 ADVGYTDEAFEIFEDMKS----------------------------------SENCQPDS 411
            + G   EA  +F  M                                    S N +PD 
Sbjct: 326 KE-GVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDV 384

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            TFS  + +   +G VSEA+++ N M+E G  PN+    SL+  Y    + D+  +  + 
Sbjct: 385 VTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDI 444

Query: 472 LPELGITPD 480
           +   G  PD
Sbjct: 445 MVNKGCAPD 453



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 3/200 (1%)

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           G+  NFD  L  + +M  +   P +  +N LL  + R K    V +IY++M   G+S + 
Sbjct: 80  GSFSNFDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSV 139

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFE 399
            T   L+             SV  ++ + G + S+  +NTL+  +C + G   EA E   
Sbjct: 140 YTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIE-GRIVEAMEQL- 197

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           D   S   QP  +T + ++      GK S A     +M+E   EP +   + +I    K 
Sbjct: 198 DYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKN 257

Query: 460 QRTDDVVRALNRLPELGITP 479
           +  ++ V     +  +GI+P
Sbjct: 258 RLVNEAVDLFYHMRSIGISP 277


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 149/308 (48%), Gaps = 3/308 (0%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDP 233
            +K   ++KAE LF +M +RGV  D+V ++TLI    +  NLP  A +  + +      P
Sbjct: 499 LKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLP-AAFKVGQELTEKNLLP 557

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           DA+ Y+  I+     G  + A    +  ++   + D   ++T+I      G     L + 
Sbjct: 558 DAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLL 617

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
             MK   +KPN+ITY+ L+  +  A    + K +  EM+ +G SP   T+  +L+A  + 
Sbjct: 618 NGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQG 677

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
           R  +  L ++  M   G+   +T+YNTL+ +    G T +A  + E+M S     PD+ T
Sbjct: 678 RRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEM-SGRGIAPDTIT 736

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           F+++I      G +  A + +++ML  G  PN+    +L+     A R  +    LN + 
Sbjct: 737 FNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMK 796

Query: 474 ELGITPDD 481
           + GI P +
Sbjct: 797 KRGIEPSN 804



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 153/329 (46%), Gaps = 7/329 (2%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y V +    K  ++D AE++  +M ++ + P+ VTFS++I+         KA ++   
Sbjct: 385 VTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMRE 444

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G DP+ +TY ++ID   +    E A  +Y     E   ++     +L+      G 
Sbjct: 445 MKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGK 504

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNT 342
            +    ++ EM   GV  + + Y  L+D + +         + +E+T+  L P+   +N 
Sbjct: 505 IEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNV 564

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           + + L   G+++  E   S   EM+  G++     YNT++A  +  G T +A ++   MK
Sbjct: 565 FINCLCMLGKSKEAE---SFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMK 621

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
            S + +P+  T+S++I      G V +A+ + NEM  +GF P       ++Q   + +R+
Sbjct: 622 RS-SIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRS 680

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVM 491
           D ++     +   G+  D      L+ V+
Sbjct: 681 DLILEIHEWMMNAGLCADITVYNTLVRVL 709



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S + + YNV M  F +   L   E L  +M  RGV  D VT +T++     +   ++A  
Sbjct: 100 SVDTVSYNVVMSGFSEQGGL-APEALLAEMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAA 158

Query: 222 WFERMPSFGC--DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
             E M   G     D + ++S++D Y + G++E AF + +R + +   +D   +++L+  
Sbjct: 159 LAEVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAG 218

Query: 280 YGTAGNFDGC-----------------------------------LNVYEEMKAIGVKPN 304
              AG  D                                      ++YEEM   GV P+
Sbjct: 219 LCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPD 278

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           ++T + L+  + +  R  +   +++EM   G +PN  TY  L+    +A+ G ++LS+  
Sbjct: 279 VVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLG 338

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           E+  +G+ + + +Y  L+      G  DEA ++F     S+N  P+  T++ +I      
Sbjct: 339 EVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRH-ALSDNHTPNGVTYTVLIDALCKA 397

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           G V  AE + +EM E    PN+   +S+I    K          +  + E GI P+
Sbjct: 398 GNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPN 453



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 151/334 (45%), Gaps = 5/334 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A AL     K+ A+   + Y + +    K +  +++  L  +++ RGV  D + ++ L+ 
Sbjct: 298 AYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMD 357

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A + F    S    P+ +TY+ +IDA  +AGNV+ A  +   +  E+  I
Sbjct: 358 WLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVL--SEMEEKSI 415

Query: 269 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
            PN   FS++I      G      +   EMK  G+ PN++TY  ++D   +         
Sbjct: 416 SPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALD 475

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +Y EM   G+  N     SL+    +    E   +++REM E+G+ L    Y TL+    
Sbjct: 476 VYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLF 535

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
             G    AF++ +++ + +N  PD+  ++  I      GK  EAE+   EM   G +P+ 
Sbjct: 536 KTGNLPAAFKVGQEL-TEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQ 594

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               ++I    +  +T   ++ LN +    I P+
Sbjct: 595 VTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPN 628



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 141/323 (43%), Gaps = 7/323 (2%)

Query: 171 TMKVFRKCRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           TM +   CR   +D A  L+++M+ +GV PD VT S L+     +   ++A   F  M  
Sbjct: 248 TMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEK 307

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  P+ +TY  +ID   +A     +  L     +    +D   ++ L+      G  D 
Sbjct: 308 IGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDE 367

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
             +++    +    PN +TY  L+D + +A      + +  EM +  +SPN  T++S++ 
Sbjct: 368 AKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIIN 427

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
              +  +        REMKE+G+  +V  Y T++         + A +++ +M   E  +
Sbjct: 428 GLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEML-CEGVE 486

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
            + +   S++      GK+ +AEA+F EM E G   +    T+LI    K        + 
Sbjct: 487 VNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKV 546

Query: 469 LNRLPELGITPD----DRFCGCL 487
              L E  + PD    + F  CL
Sbjct: 547 GQELTEKNLLPDAVVYNVFINCL 569



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 139/316 (43%), Gaps = 1/316 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + ++YNV +          +AE   ++M   G+KPD VT++T+I+         KA++  
Sbjct: 558 DAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLL 617

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M      P+ +TYS++I     AG VE A  L +   +  +         +++     
Sbjct: 618 NGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQG 677

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D  L ++E M   G+  ++  YN L+  +       +   + +EM+  G++P+  T+
Sbjct: 678 RRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITF 737

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+  + ++ + ++  S Y +M   G+  +V  +NTLL      G   E+  +  +MK 
Sbjct: 738 NALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKK 797

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               +P + T+  ++T    +    EA  ++ EM+  GF P +    +LI  + K     
Sbjct: 798 -RGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMS 856

Query: 464 DVVRALNRLPELGITP 479
                 N +   G+ P
Sbjct: 857 QAKELFNEMQNRGVLP 872



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 149/324 (45%), Gaps = 17/324 (5%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++I+Y   M    K   +D+A+ +F   L     P+ VT++ LI         + A +  
Sbjct: 348 DLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVL 407

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR-IDPNAFSTLIKLYGT 282
             M      P+ +T+SS+I+   + G V  A    D  R  K R IDPN  +     YGT
Sbjct: 408 SEMEEKSISPNVVTFSSIINGLVKRGWVGKA---TDYMREMKERGIDPNVVT-----YGT 459

Query: 283 A--GNF-----DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
              G+F     +  L+VY EM   GV+ N    ++L++ + +  +  + + +++EM + G
Sbjct: 460 VIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERG 519

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           +  +   Y +L+    +         V +E+ EK +     +YN  +     +G + EA 
Sbjct: 520 VLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAE 579

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
              E+M+S+   +PD  T+++MI   S  GK ++A  + N M  +  +PNL   ++LI  
Sbjct: 580 SFLEEMQST-GLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVG 638

Query: 456 YGKAQRTDDVVRALNRLPELGITP 479
             +A   +     LN +   G +P
Sbjct: 639 LFEAGAVEKAKYLLNEMSSSGFSP 662



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 138/308 (44%), Gaps = 1/308 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I Y+  +    +   ++KA+ L ++M   G  P ++T   ++         +  +E  E
Sbjct: 629 LITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHE 688

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M + G   D   Y++++      G    A  + +         D   F+ LI  +  +G
Sbjct: 689 WMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSG 748

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           + D   + Y++M   G+ PN+ T+N LL  +  A R  +   +  EM   G+ P+  TY 
Sbjct: 749 HLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYD 808

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L+  YG+     + + +Y EM  KG    V+ YN L++  + VG   +A E+F +M+ +
Sbjct: 809 ILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQ-N 867

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               P S T+  +++  S     +E      +M E GF P+   L+S+ + + K   + +
Sbjct: 868 RGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAFSKPGMSWE 927

Query: 465 VVRALNRL 472
             R L  L
Sbjct: 928 ARRLLKNL 935



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 142/320 (44%), Gaps = 5/320 (1%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AALA            +V+ +N  +  + K  D++ A  + + M  +GV  D V +++L+
Sbjct: 157 AALAEVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLV 216

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +        + A +  + M   G +P+ +TY+  I  Y R   V+ AF LY+    +   
Sbjct: 217 AGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVL 276

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D    S L+      G F     ++ EM+ IG  PN +TY  L+DT+ +A+R  +  ++
Sbjct: 277 PDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSL 336

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
             E+   G+  +   Y +L+    +    ++   ++R         +   Y  L+     
Sbjct: 337 LGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCK 396

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G  D A ++  +M+  ++  P+  TFSS+I     RG V +A     EM E G +PN+ 
Sbjct: 397 AGNVDGAEQVLSEME-EKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVV 455

Query: 448 VLTSLI----QCYGKAQRTD 463
              ++I    +C G+    D
Sbjct: 456 TYGTVIDGSFKCLGQEAALD 475


>gi|255661196|gb|ACU25767.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 426

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 164/360 (45%), Gaps = 30/360 (8%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           +   ++ LY+  +++ RK  D  KA  +F  +   G+ PD V ++++I+      L  +A
Sbjct: 39  RVRGDLXLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDLVVYNSMINVFGKAKLFREA 98

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
                 M + G  PD ++Y++++  Y        A  ++   R  K  +D    + +I +
Sbjct: 99  RSLICEMRTXGVMPDTVSYTTLLTMYVENKKFIEALSVFAEMREIKCLLDLTTCNIMIDV 158

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           YG  G       ++  M+ +GV+PN+++YN LL     A+   +   +++ M    +  N
Sbjct: 159 YGQLGMAKEADKLFWSMRKLGVEPNVVSYNTLLRVYSDAELFGEAXHLFRLMQRKDIEQN 218

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY S++  YG+    E   ++ +EM+ +G++ +   Y+T++++   VG  D A  +FE
Sbjct: 219 VVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYSTIISIWGKVGKLDRAAMLFE 278

Query: 400 DMKSS------------------------------ENCQPDSWTFSSMITICSCRGKVSE 429
            ++SS                              E   PD+    + I I +  G++ E
Sbjct: 279 KLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLHELKTPDNIPRDTAIQILAGSGRMEE 338

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           A  +F + ++AG   ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 339 ATWVFRQAIDAGEVKDITVFEQMIDLFSKYRKYSNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 149/305 (48%), Gaps = 14/305 (4%)

Query: 185 ERLFDDML--------DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           E LFDD L        DR V+ D   +S LI  +R     +KA+  F R+   G  PD +
Sbjct: 22  EGLFDDALSWLQKMEHDR-VRGDLXLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDLV 80

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
            Y+SMI+ +G+A     A  L    R      D  +++TL+ +Y     F   L+V+ EM
Sbjct: 81  VYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLLTMYVENKKFIEALSVFAEM 140

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           + I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LLR Y  A   
Sbjct: 141 REIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGVEPNVVSYNTLLRVYSDAELF 200

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            +   ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ S   +P++ T+S+
Sbjct: 201 GEAXHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNAITYST 259

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I+I    GK+  A  +F ++  +G E +  +  ++I  Y +A       R L+ L    
Sbjct: 260 IISIWGKVGKLDRAAMLFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLHELK--- 316

Query: 477 ITPDD 481
            TPD+
Sbjct: 317 -TPDN 320



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 124/248 (50%), Gaps = 1/248 (0%)

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           PD  TYS++I  +G+ G  + A     +  +++ R D   +S LI+L     ++   +++
Sbjct: 7   PDKYTYSTLITHFGKEGLFDDALSWLQKMEHDRVRGDLXLYSNLIELSRKLCDYSKAISI 66

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           +  +K  G+ P+++ YN++++  G+AK   + +++  EM   G+ P+  +Y +LL  Y  
Sbjct: 67  FSRLKRSGITPDLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLLTMYVE 126

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
            +   + LSV+ EM+E    L +T  N ++ +   +G   EA ++F  M+     +P+  
Sbjct: 127 NKKFIEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKL-GVEPNVV 185

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           ++++++ + S      EA  +F  M     E N+    S++  YGK    +     +  +
Sbjct: 186 SYNTLLRVYSDAELFGEAXHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 473 PELGITPD 480
              GI P+
Sbjct: 246 QSRGIEPN 253



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 4/208 (1%)

Query: 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
           + V+ YN  M ++ K  + +KA  L  +M  RG++P+ +T+ST+IS        ++A   
Sbjct: 217 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYSTIISIWGKVGKLDRAAML 276

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           FE++ S G + D + Y +MI AY RAG V  A     R  +E    D     T I++   
Sbjct: 277 FEKLRSSGIEIDQVLYQTMIVAYERAGLVSHA----KRLLHELKTPDNIPRDTAIQILAG 332

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           +G  +    V+ +    G   ++  +  ++D   + ++   V  ++ +M   G  P+ N 
Sbjct: 333 SGRMEEATWVFRQAIDAGEVKDITVFEQMIDLFSKYRKYSNVVEVFDKMRGLGYFPDSNV 392

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKG 370
            A +L AYG+    E    VY EM+++G
Sbjct: 393 IALVLNAYGKLHDFEKANDVYLEMQDEG 420



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 126/275 (45%), Gaps = 9/275 (3%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ + V+ +     +A++LF  M   GV+P+ V+++TL+       L  +A   F  M  
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWSMRKLGVEPNVVSYNTLLRVYSDAELFGEAXHLFRLMQR 212

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNF 286
              + + +TY+SM+  YG+    E A  L    ++    I+PNA  +ST+I ++G  G  
Sbjct: 213 KDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG--IEPNAITYSTIISIWGKVGKL 270

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D    ++E++++ G++ + + Y  ++    RA      K +  E+      P  +T   +
Sbjct: 271 DRAAMLFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLHELKTPDNIPR-DTAIQI 329

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L   GR    E+   V+R+  + G    +T++  ++ + +         E+F+ M+    
Sbjct: 330 LAGSGRM---EEATWVFRQAIDAGEVKDITVFEQMIDLFSKYRKYSNVVEVFDKMRGL-G 385

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
             PDS   + ++          +A  ++ EM + G
Sbjct: 386 YFPDSNVIALVLNAYGKLHDFEKANDVYLEMQDEG 420


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 135/263 (51%), Gaps = 1/263 (0%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F +  +++ A+ LF +M+  GV PD VT +TL++    N    KA+E F+       D D
Sbjct: 241 FCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLD 300

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
             T + +I+   +   V+ A+ L++         D   ++ LI ++   GNF    ++Y 
Sbjct: 301 TATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYL 360

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           EM   G+ P+ +TYN+++D   +  R  + + +   M   G SP+  T+++L++ Y +A 
Sbjct: 361 EMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAG 420

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             +D L ++ EM ++G+      YN L+     VG  + A +IFE+M SS  C PD+ TF
Sbjct: 421 RVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVC-PDTITF 479

Query: 415 SSMITICSCRGKVSEAEAMFNEM 437
            SM+     + ++ +   M  ++
Sbjct: 480 RSMLAGLCTKAELQKGLTMLEDL 502



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 181/403 (44%), Gaps = 25/403 (6%)

Query: 94  SYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVI---ILNNMTNPDTAAL 150
           +Y T  N + KL    D+ SA      ++LR + +  ++ + VI   I++ +        
Sbjct: 47  TYGTIVNGMCKLG---DTVSA-----LNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIK 98

Query: 151 ALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A   FT   +      V+ YN  +  +        AE+L  DM++R + PD VTFS LI+
Sbjct: 99  AQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALIN 158

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   + A E +  M      P  +TYSSMID + +   +E A  ++D   ++    
Sbjct: 159 AFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSP 218

Query: 269 DPNAFSTLIK---------LYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
           D    +TLI          ++G    GN +   ++++EM + GV P+++T N LL  +  
Sbjct: 219 DIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCE 278

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
             +  +   ++K    + +  +  T   ++    +    ++   ++  +   G++  V  
Sbjct: 279 NGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVT 338

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           YN L+ +    G    A +I+ +M   +   P + T++SM+     + ++ EA  M + M
Sbjct: 339 YNILIGVFVKEGNFLRAEDIYLEML-CKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSM 397

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  G  P++   ++LI+ Y KA R DD +   + + + G+  D
Sbjct: 398 VSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVAD 440



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 154/330 (46%), Gaps = 17/330 (5%)

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   GC  + +T++++++   R G V  A  L DR   E  + D   + T++      G+
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               LN+  +M    +K N++ Y+ ++D + +     + + I+ EM + G+ PN  TY  
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 346 LLRAYGRARYGE--DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           ++  Y    YG+  D   + R+M E+ +   V  ++ L+      G    A E++ +M  
Sbjct: 121 MIDGY--CSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREML- 177

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR-- 461
             N  P + T+SSMI       ++ +A+ MF+ M+  G  P++  L +LI    +A+R  
Sbjct: 178 RRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHL 237

Query: 462 ------TDDVVRALNRLPEL---GITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 511
                   +V  A +   E+   G++PD   C  LL  + +  K E+  ++ +  +KS  
Sbjct: 238 IHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKM 297

Query: 512 KLGYVVKLLLEEQDIEGDFKKEATELFNSI 541
            L      ++     +G+   EA +LFNS+
Sbjct: 298 DLDTATCNIIINGMCKGNKVDEAWDLFNSL 327



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 145/318 (45%), Gaps = 14/318 (4%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           M++ G   + VTF+TL++         +A+   +RM   G  PDA+TY ++++   + G+
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
              A  +  +    + + +   +S ++      GN     N++ EM   G+ PN++TYN 
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           ++D      +    + + ++M +  + P+  T+++L+ A+ +         +YREM  + 
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRN 180

Query: 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR------ 424
           +  +   Y++++         ++A  +F D+  S+ C PD  T +++I  C CR      
Sbjct: 181 IFPTTITYSSMIDGFCKHSRLEDAKHMF-DLMVSKGCSPDIITLNTLIDGC-CRAKRHLI 238

Query: 425 ------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 G V+ A+ +F EM+  G  P++    +L+    +  + +  +       +  + 
Sbjct: 239 HGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMD 298

Query: 479 PDDRFCGCLLNVMTQTPK 496
            D   C  ++N M +  K
Sbjct: 299 LDTATCNIIINGMCKGNK 316



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 4/181 (2%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKAS---KEVILYNVTMKVFRKCRDLDKAERLFDDM 191
           C II+N M   +    A   F N L  +    +V+ YN+ + VF K  +  +AE ++ +M
Sbjct: 304 CNIIINGMCKGNKVDEAWDLF-NSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEM 362

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
           L +G+ P  VT+++++      N   +A +  + M S GC PD +T+S++I  Y +AG V
Sbjct: 363 LCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRV 422

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
           +    L+          D   ++ LI  +   G+ +G  +++EEM + GV P+ IT+ ++
Sbjct: 423 DDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSM 482

Query: 312 L 312
           L
Sbjct: 483 L 483



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 147/336 (43%), Gaps = 25/336 (7%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALAL     +     + + Y   +    K  D   A  +   M +  +K + V +S ++ 
Sbjct: 29  ALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVD 88

Query: 209 --CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
             C   N++  KA   F  M   G  P+ LTY+ MID Y   G    A  L  R   E+ 
Sbjct: 89  RLCKDGNHI--KAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLL-RDMIER- 144

Query: 267 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
            IDP+   FS LI  +   G   G   +Y EM    + P  ITY++++D   +  R    
Sbjct: 145 NIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDA 204

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRAR---------YGEDTLS--VYREMKEKGMQL 373
           K ++  M   G SP+  T  +L+    RA+          G   ++  +++EM   G+  
Sbjct: 205 KHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSP 264

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEA 432
            +   NTLLA   + G  ++A E+F+  + S+    D+ T + +I    C+G KV EA  
Sbjct: 265 DIVTCNTLLAGLCENGKLEKALEMFKVFQKSKM-DLDTATCNIIIN-GMCKGNKVDEAWD 322

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDV 465
           +FN +   G E ++     LI  +   G   R +D+
Sbjct: 323 LFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDI 358


>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Cucumis sativus]
          Length = 962

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 155/326 (47%), Gaps = 3/326 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
           VI Y   + ++ K   + KA  +  +M   G+K +  T+S LI+   ++ +  N A   F
Sbjct: 486 VITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWAN-AFAIF 544

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E +   G  PD + Y+++I A+   G ++ A       + ++ +     F  +I  +   
Sbjct: 545 EDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARK 604

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     L+V++ M+  G  P + TYN L+  +   ++  + + I  EMT  G+SPN +TY
Sbjct: 605 GEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTY 664

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +++  Y          + + +++++G+QL V  Y  LL  C   G    A  + ++M S
Sbjct: 665 TTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEM-S 723

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           ++N   +++ ++ +I   + RG + EA  +  +M   G +P++   TS I    KA    
Sbjct: 724 AQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQ 783

Query: 464 DVVRALNRLPELGITPDDRFCGCLLN 489
              + +  +  +G+ P+ +    L+N
Sbjct: 784 RATKTIEEMKSVGVKPNVKTYTTLIN 809



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 150/316 (47%), Gaps = 1/316 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y   +  +   RD+++A      M + G++   VT+S L+S          A  WF+  
Sbjct: 348 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVSGFAKTGNAESADHWFQEA 407

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
                  +A+ Y ++I AY +  N++ A  L      E      + + T++  Y   G+ 
Sbjct: 408 KEKHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDE 467

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
           D CL V+E  K  G+ P++ITY  L++   +  +  +   + KEM   G+  N  TY+ L
Sbjct: 468 DKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSML 527

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  + + +   +  +++ ++ + G++  V LYN ++     +G  D A    ++M+   +
Sbjct: 528 INGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRH 587

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            +P + TF  +I   + +G++ +A  +F+ M  +G  P +    +LI    + ++ +   
Sbjct: 588 -KPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAE 646

Query: 467 RALNRLPELGITPDDR 482
           + L+ +   G++P++ 
Sbjct: 647 QILDEMTLAGVSPNEH 662



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 134/304 (44%), Gaps = 8/304 (2%)

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
           F +  ++ KA  +FD M   G  P   T++ LI          KA +  + M   G  P+
Sbjct: 601 FARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPN 660

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
             TY++++  Y   G+   AF  + + R+E  ++D   +  L+K    +G     L V +
Sbjct: 661 EHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTK 720

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           EM A  +  N   YN L+D   R    W+   + ++M   G+ P+ +TY S + A  +A 
Sbjct: 721 EMSAQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAG 780

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             +       EMK  G++ +V  Y TL+   A     ++A   FE+MK S   +PD   +
Sbjct: 781 DMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLS-GLKPDRAVY 839

Query: 415 SSMITICSCRGKVSEA------EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT-DDVVR 467
             ++T    R  V+         ++  EM++     ++       +C  K +RT  ++  
Sbjct: 840 HCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDMGTAVHWSKCLLKIERTGGEITE 899

Query: 468 ALNR 471
           AL +
Sbjct: 900 ALQK 903



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 172/407 (42%), Gaps = 47/407 (11%)

Query: 117 DDVFSVLRCLGDDFLEQDCV---IILNNMTNPDTAALALTYF--TNKLKASKEVILY-NV 170
           ++  S +R + ++ +E   V   I+++       A  A  +F    +  +S   I+Y N+
Sbjct: 363 EEALSCVRKMKEEGIEMSLVTYSILVSGFAKTGNAESADHWFQEAKEKHSSLNAIIYGNI 422

Query: 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230
                ++C ++DKAE L  +M + G+      + T++    M    +K +  FER    G
Sbjct: 423 IYAYCQRC-NMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKECG 481

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
            +P  +TY  +I+ Y + G V  A  +     +   + +   +S LI  +    ++    
Sbjct: 482 LNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAF 541

Query: 291 NVYEEMKAIGVKPNMITYNNLLDT---MGRAKRPW-QVKTIYKE---------------- 330
            ++E++   G+KP+++ YNN++     MG+  R    VK + K+                
Sbjct: 542 AIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGF 601

Query: 331 ---------------MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
                          M  +G  P  +TY +L+      R  E    +  EM   G+  + 
Sbjct: 602 ARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNE 661

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             Y T++   A +G T +AF  F  ++  E  Q D +T+ +++  C   G++  A A+  
Sbjct: 662 HTYTTIMHGYASLGDTGKAFTYFTKLR-DEGLQLDVYTYEALLKACCKSGRMQSALAVTK 720

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTD--DVVRALNRLPELGITPD 480
           EM       N F+   LI   G A+R D  +    + ++   G+ PD
Sbjct: 721 EMSAQNIPRNTFIYNILID--GWARRGDIWEAADLMQQMKREGVQPD 765



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 121/275 (44%), Gaps = 13/275 (4%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
            V  FER+      P    Y  M++ Y R G++  A   +++ R        + ++ LI 
Sbjct: 299 VVSAFERIKK----PSRKEYGLMVNYYTRRGDMHRARETFEKMRARGIEPSSHVYTNLIH 354

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            Y    + +  L+   +MK  G++ +++TY+ L+    +          ++E  +   S 
Sbjct: 355 AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVSGFAKTGNAESADHWFQEAKEKHSSL 414

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N   Y +++ AY +    +   ++ REM+E+G+   + +Y+T++     VG  D+   +F
Sbjct: 415 NAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVF 474

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           E  K      P   T+  +I + +  GKVS+A  +  EM  AG + N+   + LI  + K
Sbjct: 475 ERFKEC-GLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLK 533

Query: 459 AQRTDDVVRALNRLPELGITPD--------DRFCG 485
            +   +       L + GI PD          FCG
Sbjct: 534 LKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCG 568



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 111/225 (49%), Gaps = 10/225 (4%)

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N+   ++ +E +K    KP+   Y  +++   R     + +  +++M   G+ P+ + Y 
Sbjct: 295 NWQAVVSAFERIK----KPSRKEYGLMVNYYTRRGDMHRARETFEKMRARGIEPSSHVYT 350

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+ AY   R  E+ LS  R+MKE+G+++S+  Y+ L++  A  G  + A   F++ K  
Sbjct: 351 NLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVSGFAKTGNAESADHWFQEAKE- 409

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           ++   ++  + ++I     R  + +AEA+  EM E G +  + +  +++  Y      D 
Sbjct: 410 KHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDK 469

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 509
            +    R  E G+ P     GCL+N+  +     LGK+ + +E S
Sbjct: 470 CLLVFERFKECGLNPSVITYGCLINLYAK-----LGKVSKALEVS 509



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 41/243 (16%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  YN  +    + R ++KAE++ D+M   GV P+  T++T++          KA  +F 
Sbjct: 626 VHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFTYFT 685

Query: 225 RMPSFGCDPDALTYSSM-----------------------------------IDAYGRAG 249
           ++   G   D  TY ++                                   ID + R G
Sbjct: 686 KLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRG 745

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
           ++  A  L  + + E  + D + +++ I     AG+        EEMK++GVKPN+ TY 
Sbjct: 746 DIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYT 805

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGE-----DTLSVY 363
            L++   RA  P +  + ++EM  +GL P+   Y  L+ +   RA           LSV 
Sbjct: 806 TLINGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVC 865

Query: 364 REM 366
           REM
Sbjct: 866 REM 868


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 157/319 (49%), Gaps = 5/319 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y   +  +    +L K  +L  +M  +G+KP+  T+S++I     +    +  +  
Sbjct: 144 DVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVL 203

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  PD + Y+++ID + + GN + A+ L+      +   D  AFS LI     +
Sbjct: 204 REMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGS 263

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       ++ EM   G +P+ +TY  L+D   +     +   ++ +M   GL+PN  TY
Sbjct: 264 GKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTY 323

Query: 344 ASLLRAYGRARYGE-DTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            +L  A G  + GE DT + +  EM  KG+QL+++ YNT++      G   +A ++ E+M
Sbjct: 324 TAL--ADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEM 381

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           K +    PD+ T+++++      G++ +A  +  EML+ G +P +     L+     + +
Sbjct: 382 KEA-GLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGK 440

Query: 462 TDDVVRALNRLPELGITPD 480
            +D  R L  + E GI P+
Sbjct: 441 LEDGERLLKWMLEKGIMPN 459



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 150/315 (47%), Gaps = 37/315 (11%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFER 225
           +++V  +V  +   L++A + FD +L+ GV     + +  ++C +   ++    ++ F  
Sbjct: 41  VFDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTCLSSKRDMLGMVLKVFSE 100

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
            P  G   +  +Y+ ++++  R G +  A  L  R   +    D  +++T+I  Y   G 
Sbjct: 101 FPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGE 160

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               + + +EM+  G+KPN+ TY++++  + ++ +  + + + +EM   G+ P+   Y +
Sbjct: 161 LQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTT 220

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  + +                                   +G T  A+++F +M++ E
Sbjct: 221 LIDGFCK-----------------------------------LGNTQAAYKLFSEMEARE 245

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              PDS  FS++I   S  GKV EA+ +FNEM++ GFEP+    T+LI  Y K       
Sbjct: 246 -IVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKA 304

Query: 466 VRALNRLPELGITPD 480
               N++ ++G+TP+
Sbjct: 305 FFLHNQMVQIGLTPN 319



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 139/317 (43%), Gaps = 5/317 (1%)

Query: 167 LYNVTMKVFRKCRD--LDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWF 223
           LY  +  +   C+   + + E++  +M+ RGV PD+V ++TLI    ++ N    A + F
Sbjct: 180 LYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGN-TQAAYKLF 238

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M +    PD++ +S++I     +G V  A  L++    + +  D   ++ LI  Y   
Sbjct: 239 SEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKL 298

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       ++ +M  IG+ PN++TY  L D + ++        +  EM   GL  N +TY
Sbjct: 299 GEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTY 358

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +++    +A      + +  EMKE G+      Y TL+      G   +A E+  +M  
Sbjct: 359 NTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREM-L 417

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               QP   TF+ ++      GK+ + E +   MLE G  PN     S+++ Y       
Sbjct: 418 DRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMR 477

Query: 464 DVVRALNRLPELGITPD 480
                   +   G+ PD
Sbjct: 478 ISTEIYRGMCAQGVVPD 494



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 142/299 (47%), Gaps = 1/299 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++Y   +  F K  +   A +LF +M  R + PD++ FS LI     +    +A + F  
Sbjct: 216 VIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNE 275

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G +PD +TY+++ID Y + G ++ AF L+++        +   ++ L      +G 
Sbjct: 276 MIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGE 335

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D    +  EM   G++ N+ TYN +++ + +A    Q   + +EM + GL P+  TY +
Sbjct: 336 LDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTT 395

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ AY +         + REM ++G+Q +V  +N L+      G  ++   + + M   +
Sbjct: 396 LMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWM-LEK 454

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              P++ T++S++     R  +  +  ++  M   G  P+      LI+ + KA+   +
Sbjct: 455 GIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKE 513



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 119/249 (47%), Gaps = 14/249 (5%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +    K  ++ +A +L ++M + G+ PD +T++TL+          KA E    M 
Sbjct: 358 YNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREML 417

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID----PNA--FSTLIKLYG 281
             G  P  +T++ +++    +G +E      D  R  KW ++    PNA  +++++K Y 
Sbjct: 418 DRGLQPTVVTFNVLMNGLCMSGKLE------DGERLLKWMLEKGIMPNAATYNSIMKQYC 471

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
              N      +Y  M A GV P+  TYN L+    +A+   +   ++KEM +   +   +
Sbjct: 472 IRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTAS 531

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           +Y +L++ + + +   +   ++ EM+ +G+  S  +YN  + M  + G  +   E+ ++ 
Sbjct: 532 SYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDE- 590

Query: 402 KSSENCQPD 410
            + E C  D
Sbjct: 591 -AIEKCLLD 598



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 128/288 (44%), Gaps = 6/288 (2%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   +  + K  ++ KA  L + M+  G+ P+ VT++ L      +   + A E    
Sbjct: 286 VTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHE 345

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G   +  TY+++++   +AGN+  A  L +  +      D   ++TL+  Y   G 
Sbjct: 346 MCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGE 405

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 +  EM   G++P ++T+N L++ +  + +    + + K M + G+ PN  TY S
Sbjct: 406 MVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNS 465

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +++ Y        +  +YR M  +G+      YN L+          EA+ + ++M   +
Sbjct: 466 IMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEM-VEK 524

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-----NLFV 448
                + +++++I     R K+ EA  +F EM   G        NLFV
Sbjct: 525 RFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFV 572



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 96/217 (44%), Gaps = 4/217 (1%)

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW--Q 323
           W  DP+ F    ++   AG  +     ++++   GV  +  + N  L  +  +KR     
Sbjct: 35  WGSDPHVFDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTCLS-SKRDMLGM 93

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
           V  ++ E    G+  N  +Y  L+ +  R     +   +   M+ KG    V  Y T++ 
Sbjct: 94  VLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIID 153

Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
               VG   +  ++ ++M+  +  +P+ +T+SS+I +    GKV E E +  EM++ G  
Sbjct: 154 GYCHVGELQKVVQLVKEMQL-KGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVF 212

Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           P+  + T+LI  + K   T    +  + +    I PD
Sbjct: 213 PDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPD 249



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 76/149 (51%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ +NV M        L+  ERL   ML++G+ P+  T+++++    + N    + E + 
Sbjct: 425 VVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYR 484

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M + G  PD+ TY+ +I  + +A N++ A+ L+     +++ +  ++++ LIK +    
Sbjct: 485 GMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRK 544

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
                  ++EEM+  G+  +   YN  +D
Sbjct: 545 KLLEARQLFEEMRREGLVASAEIYNLFVD 573


>gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula]
 gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 738

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 143/323 (44%), Gaps = 7/323 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V +Y   +  +   R+ DKA  ++  M+ RG+K + V FS ++ C        + V+ F
Sbjct: 329 DVYVYCALVHGYCNSRNFDKALAVYKSMISRGIKTNCVIFSCILHCLDEMGRALEVVDMF 388

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E     G   D   Y+ + DA  + G V+ A G+ D  ++ +  +D   ++TLI  Y   
Sbjct: 389 EEFKESGLFIDRKAYNILFDALCKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQ 448

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G      ++++EM+  G KP+++ YN L     R +  ++   +   M   G+ PN  T+
Sbjct: 449 GKPIEAQSLFKEMEERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTH 508

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL------AMCADVGYTDEAFEI 397
             ++     A   E+    +  +K + +++SV +Y  L+      A+        EAF +
Sbjct: 509 KIIIEGLCSAGKVEEAEEFFNWLKGESVEISVEIYTALVNGYCEAALIEKSHELKEAFIL 568

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
              M    N +P    +S + T   C G +  A  +FN  +  GF P+    T +I  Y 
Sbjct: 569 LRTMLEM-NMKPSKVMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYC 627

Query: 458 KAQRTDDVVRALNRLPELGITPD 480
           K     +       + E GITPD
Sbjct: 628 KTNCLPEAHELFKDMKERGITPD 650



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 127/285 (44%), Gaps = 11/285 (3%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A+ LF +M +RG KPD V ++ L +    N    +A++    M S G +P++ T+  +I
Sbjct: 453 EAQSLFKEMEERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIII 512

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE------M 296
           +    AG VE A   ++  + E   I    ++ L+  Y  A   +    + E       M
Sbjct: 513 EGLCSAGKVEEAEEFFNWLKGESVEISVEIYTALVNGYCEAALIEKSHELKEAFILLRTM 572

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
             + +KP+ + Y+ +   +          T++      G +P+  TY  ++  Y +    
Sbjct: 573 LEMNMKPSKVMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNCL 632

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            +   ++++MKE+G+      Y  ++     +    EA E+F+DMK     +PD   ++ 
Sbjct: 633 PEAHELFKDMKERGITPDAVTYTIMINGYCKMNCLREAHELFKDMK-ERGIKPDVIAYTV 691

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           +I      G    A  ++NEM++ G  P      +L +C  KA +
Sbjct: 692 IIKGLLNSGHTEIAFQLYNEMIDMGMTPG----ATLKRCIQKANK 732



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/316 (20%), Positives = 138/316 (43%), Gaps = 1/316 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ +N  +    K  ++D A  LF      G+  +  T++ +I            V  F+
Sbjct: 190 ILSFNFLINRLVKHDEVDMALCLFVRFKSFGLIFNEYTYTIVIKALCKKGDWENVVRVFD 249

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G D D+  Y++ I+   +    ++ + +    R     +   A++ +I+ +    
Sbjct: 250 EMKEAGVDDDSYCYATFIEGLCKNNRSDLGYAVLQDYRTRNAHVHKYAYTAVIRGFCNET 309

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D   +V+ EM+  G+ P++  Y  L+     ++   +   +YK M   G+  N   ++
Sbjct: 310 KLDEAESVFLEMEKQGLVPDVYVYCALVHGYCNSRNFDKALAVYKSMISRGIKTNCVIFS 369

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            +L          + + ++ E KE G+ +    YN L      +G  D+A  + +++KS 
Sbjct: 370 CILHCLDEMGRALEVVDMFEEFKESGLFIDRKAYNILFDALCKLGKVDDAVGMLDELKSM 429

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +    D   ++++I     +GK  EA+++F EM E GF+P++     L   + + +   +
Sbjct: 430 Q-LDVDMKHYTTLINGYFLQGKPIEAQSLFKEMEERGFKPDVVAYNVLAAGFFRNRTDFE 488

Query: 465 VVRALNRLPELGITPD 480
            +  LN +   G+ P+
Sbjct: 489 AMDLLNYMESQGVEPN 504



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 111/238 (46%), Gaps = 7/238 (2%)

Query: 271 NAFSTLIKLYGTAGNFDGCLN-VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
           NAF+  +K   +   F   ++ + +  K + + PN++++N L++ + +         ++ 
Sbjct: 155 NAFNGFVKACVSQNMFVEAIDFLLQTRKNVVILPNILSFNFLINRLVKHDEVDMALCLFV 214

Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
                GL  N  TY  +++A  +    E+ + V+ EMKE G+      Y T +       
Sbjct: 215 RFKSFGLIFNEYTYTIVIKALCKKGDWENVVRVFDEMKEAGVDDDSYCYATFIEGLCKNN 274

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
            +D  + + +D + + N     + ++++I       K+ EAE++F EM + G  P+++V 
Sbjct: 275 RSDLGYAVLQDYR-TRNAHVHKYAYTAVIRGFCNETKLDEAESVFLEMEKQGLVPDVYVY 333

Query: 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
            +L+  Y  ++  D  +     +   GI  +     C+L+ +     +E+G+ +E V+
Sbjct: 334 CALVHGYCNSRNFDKALAVYKSMISRGIKTNCVIFSCILHCL-----DEMGRALEVVD 386



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 2/125 (1%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           +++ A  LF+  +  G  PD VT++ +I+   + N LP +A E F+ M   G  PDA+TY
Sbjct: 596 NMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNCLP-EAHELFKDMKERGITPDAVTY 654

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           + MI+ Y +   +  A  L+   +    + D  A++ +IK    +G+ +    +Y EM  
Sbjct: 655 TIMINGYCKMNCLREAHELFKDMKERGIKPDVIAYTVIIKGLLNSGHTEIAFQLYNEMID 714

Query: 299 IGVKP 303
           +G+ P
Sbjct: 715 MGMTP 719



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + Y + +  + K   L +A  LF DM +RG+ PD VT++ +I+     N   +A E F
Sbjct: 615 DAVTYTIMINGYCKTNCLPEAHELFKDMKERGITPDAVTYTIMINGYCKMNCLREAHELF 674

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD 259
           + M   G  PD + Y+ +I     +G+ E+AF LY+
Sbjct: 675 KDMKERGIKPDVIAYTVIIKGLLNSGHTEIAFQLYN 710



 Score = 38.9 bits (89), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 34/72 (47%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + Y + +  + K   L +A  LF DM +RG+KPD + ++ +I     +     A + +
Sbjct: 650 DAVTYTIMINGYCKMNCLREAHELFKDMKERGIKPDVIAYTVIIKGLLNSGHTEIAFQLY 709

Query: 224 ERMPSFGCDPDA 235
             M   G  P A
Sbjct: 710 NEMIDMGMTPGA 721


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 145/302 (48%), Gaps = 5/302 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           + +A    D+++  G + D V + TLI           A++   R+      P+ + YS+
Sbjct: 143 IHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYST 202

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKA 298
           +ID   +  +V  AF LY    ++   I PN   +S LI  + T G     ++++ +M  
Sbjct: 203 IIDGMCKDKHVNDAFDLYSEMVSKG--ISPNVVTYSALISGFFTVGQLKDAIDLFNKMIL 260

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
             +KP++ T+N L+D   +  +  + KT++  M   G+ PN  TY SL+  Y   +    
Sbjct: 261 ENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNK 320

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
             S+   M ++G+   +  YN L+     +   DEA  +F++M   ++  PD  T++S+I
Sbjct: 321 AKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEM-HHKHIIPDVVTYNSLI 379

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 GK+S A  + +EM + G  P++   +S++    K  + D  +  L +L + GI 
Sbjct: 380 DGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIR 439

Query: 479 PD 480
           P+
Sbjct: 440 PN 441



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 134/269 (49%), Gaps = 1/269 (0%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V+P+ V +ST+I     +   N A + +  M S G  P+ +TYS++I  +   G ++ A 
Sbjct: 193 VQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAI 252

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L+++   E  + D   F+ L+  +   G       V+  M   G+KPN++TY +L+D  
Sbjct: 253 DLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGY 312

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
              K   + K+I   M+  G++P+  +Y  L+  + + +  ++ +++++EM  K +   V
Sbjct: 313 CLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDV 372

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YN+L+     +G    A ++ ++M       PD  T+SS++       +V +A A+  
Sbjct: 373 VTYNSLIDGLCKLGKISYALKLVDEM-HDRGVPPDIITYSSILDALCKNHQVDKAIALLT 431

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           ++ + G  PN++  T LI    K  R +D
Sbjct: 432 KLKDQGIRPNMYTYTILIDGLCKGGRLED 460



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 136/279 (48%), Gaps = 2/279 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  +N+ +  F K   + + + +F  M+ +G+KP+ VT+ +L+    +    NKA    
Sbjct: 266 DVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSIL 325

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G +PD  +Y+ +ID + +   V+ A  L+    ++    D   +++LI      
Sbjct: 326 YTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKL 385

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     L + +EM   GV P++ITY+++LD + +  +  +   +  ++ D G+ PN  TY
Sbjct: 386 GKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTY 445

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             L+    +    ED  +++ ++  KG  ++V  Y  ++    + G  DEA  +   MK 
Sbjct: 446 TILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKD 505

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
           + +C PD+ T+  +I     + +  +AE +  EM+  G 
Sbjct: 506 N-SCIPDAVTYEIIIRSLFDKDENDKAEKL-REMITRGL 542



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 116/252 (46%), Gaps = 3/252 (1%)

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
           G  P+ +T++++I      G +  A   +D      +++D   + TLI      G     
Sbjct: 122 GYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAA 181

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           L++   +    V+PN++ Y+ ++D M + K       +Y EM   G+SPN  TY++L+  
Sbjct: 182 LDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 241

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQ 408
           +      +D + ++ +M  + ++  V  +N L+   C D G   E   +F  M   +  +
Sbjct: 242 FFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKD-GKMKEGKTVFA-MMMKQGIK 299

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           P+  T+ S++       +V++A+++   M + G  P++     LI  + K ++ D+ +  
Sbjct: 300 PNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNL 359

Query: 469 LNRLPELGITPD 480
              +    I PD
Sbjct: 360 FKEMHHKHIIPD 371



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 104/223 (46%), Gaps = 1/223 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A ++ Y  ++   + ++  YN+ +  F K + +D+A  LF +M  + + PD VT+++LI 
Sbjct: 321 AKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLID 380

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   + A++  + M   G  PD +TYSS++DA  +   V+ A  L  + +++  R 
Sbjct: 381 GLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRP 440

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           +   ++ LI      G  +   N++E++   G    + TY  ++          +   + 
Sbjct: 441 NMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALL 500

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
            +M DN   P+  TY  ++R+    +   D     REM  +G+
Sbjct: 501 SKMKDNSCIPDAVTYEIIIRSL-FDKDENDKAEKLREMITRGL 542



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 116/282 (41%), Gaps = 22/282 (7%)

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F  +P      + + YSS+   +    +V  AF L+ R   +        F+ ++     
Sbjct: 29  FNFIPYSSSKINFIPYSSISTTFHNNNDVVDAFSLFSRLLRQNPTPPAIEFNKILGSLVK 88

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           + ++   L++ ++M+  G+ P +  +          + P Q+          G  PN  T
Sbjct: 89  SKHYHTVLSLSQQMEFEGINPVLFHF----------QHPHQLM---------GYHPNTIT 129

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           + +L++           L  +  +   G QL    Y TL+     VG T  A ++   + 
Sbjct: 130 FTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVD 189

Query: 403 SSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
            +   QP+   +S++I    C+ K V++A  +++EM+  G  PN+   ++LI  +    +
Sbjct: 190 GNL-VQPNVVMYSTIID-GMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQ 247

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 503
             D +   N++    I PD      L++   +  K + GK V
Sbjct: 248 LKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTV 289


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 188/418 (44%), Gaps = 18/418 (4%)

Query: 137 IILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKC--RDLDKAERLFDDML 192
           I++N +   +    A++      KL    + I +N  +    +C   ++ +A  LF++M+
Sbjct: 132 ILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLIN--GRCIEGEIKEAVGLFNEMV 189

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
            RG +PD +++ST+I+    +   + A++   +M   GC P+ + Y+++ID+  +   V 
Sbjct: 190 RRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVN 249

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  L     +     D   +ST++  + + G+ +    ++ EM    V PN +T+  L+
Sbjct: 250 DAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILV 309

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           D + +     + + +++ MT  G  PN  TY +L+  Y      ++   V   M +KG  
Sbjct: 310 DGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCA 369

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
             V  YN L+         DEA  +  +M   E   PD+ T+S+++      G+  EA  
Sbjct: 370 PVVHSYNILINGYCKRRRLDEAKSLLVEMSEKE-LTPDTVTYSTLMQGLCQVGRPQEALN 428

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           +F EM  +G  P+L   ++L+    K    D+ ++ L  + E  I PD      L+  M 
Sbjct: 429 LFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMF 488

Query: 493 QTPKEELGK------LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 544
              K E+ K        + ++ +      ++K LL+E         EA ELF  +  D
Sbjct: 489 IAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKE-----GLSDEAYELFRKMEDD 541



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 154/309 (49%), Gaps = 1/309 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ Y+  +  F     L++A  LF++M+ R V P+ VTF+ L+       + ++A   F
Sbjct: 266 DVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVF 325

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G +P+A TY++++D Y     ++ A  + D   ++      ++++ LI  Y   
Sbjct: 326 EAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKR 385

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D   ++  EM    + P+ +TY+ L+  + +  RP +   ++KEM  +GL P+  TY
Sbjct: 386 RRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTY 445

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           ++LL    +  + ++ L + + M+E  ++  + LYN L+      G  + A E+F  +  
Sbjct: 446 STLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKL-F 504

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           ++  QP   T++ MI      G   EA  +F +M + GF PN      +IQ + + Q + 
Sbjct: 505 ADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSS 564

Query: 464 DVVRALNRL 472
             +R ++ +
Sbjct: 565 TAIRLIDEM 573



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 159/320 (49%), Gaps = 11/320 (3%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           C+D  ++ A  L  +M+DRG+ PD VT+ST++         N+A   F  M      P+ 
Sbjct: 243 CKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNT 302

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVY 293
           +T++ ++D   + G V  A  +++     K   +PNA++   L+  Y      D    V 
Sbjct: 303 VTFTILVDGLCKEGMVSEARCVFEAM--TKKGAEPNAYTYNALMDGYCLNNQMDEAQKVL 360

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
           + M   G  P + +YN L++   + +R  + K++  EM++  L+P+  TY++L++   + 
Sbjct: 361 DIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQV 420

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
              ++ L++++EM   G+   +  Y+TLL      G+ DEA ++ + M+ S+  +PD   
Sbjct: 421 GRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESK-IEPDIVL 479

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
           ++ +I      GK+  A+ +F+++   G +P +   T +I+   K   +D+      ++ 
Sbjct: 480 YNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKME 539

Query: 474 ELGITPDDRFCGCLLNVMTQ 493
           + G  P+     C  NV+ Q
Sbjct: 540 DDGFLPNS----CSYNVIIQ 555



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 165/354 (46%), Gaps = 5/354 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALA  Y   ++     V+ +   +    K +       L + M   GV  +  + + LI+
Sbjct: 76  ALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILIN 135

Query: 209 C-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           C  R+N++   A+    +M   G  PDA+T++++I+     G ++ A GL++       +
Sbjct: 136 CLCRLNHVV-FAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQ 194

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D  ++ST+I     +GN    L +  +M+  G KPN++ Y  ++D++ +         +
Sbjct: 195 PDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDL 254

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
             EM D G+ P+  TY+++L  +    +  +   ++ EM  + +  +   +  L+     
Sbjct: 255 LSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCK 314

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G   EA  +FE M + +  +P+++T+++++       ++ EA+ + + M++ G  P + 
Sbjct: 315 EGMVSEARCVFEAM-TKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVH 373

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT--PKEEL 499
               LI  Y K +R D+    L  + E  +TPD      L+  + Q   P+E L
Sbjct: 374 SYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEAL 427



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 108/215 (50%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ +  + K R LD+A+ L  +M ++ + PD VT+STL+        P +A+  F+ M 
Sbjct: 375 YNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMC 434

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S G  PD +TYS+++D   + G+++ A  L    +  K   D   ++ LI+    AG  +
Sbjct: 435 SSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLE 494

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++ ++ A G++P + TY  ++  + +     +   ++++M D+G  PN  +Y  ++
Sbjct: 495 VAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVII 554

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           + + + +     + +  EM  K      + +  LL
Sbjct: 555 QGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLL 589



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 86/191 (45%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           + + + Y+  M+   +     +A  LF +M   G+ PD +T+STL+     +   ++A++
Sbjct: 404 TPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALK 463

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + M     +PD + Y+ +I+    AG +E+A  L+ +   +  +     ++ +IK   
Sbjct: 464 LLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLL 523

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G  D    ++ +M+  G  PN  +YN ++    + +       +  EM     S + +
Sbjct: 524 KEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSS 583

Query: 342 TYASLLRAYGR 352
           T+  LL    R
Sbjct: 584 TFQMLLDLESR 594



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 62/131 (47%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L     + K   +++LYN+ ++       L+ A+ LF  +   G++P   T++ +I 
Sbjct: 461 ALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIK 520

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 L ++A E F +M   G  P++ +Y+ +I  + +  +   A  L D    +++  
Sbjct: 521 GLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSA 580

Query: 269 DPNAFSTLIKL 279
           D + F  L+ L
Sbjct: 581 DSSTFQMLLDL 591


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 147/316 (46%), Gaps = 3/316 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +N  MK   +   +  A  + ++M   GV PD  TF+TL+           A+   
Sbjct: 184 DVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVK 243

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            RM   GC P  +T + +I+ Y + G VE A G   +     +  D   ++T +      
Sbjct: 244 ARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQN 303

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+    L V + M   G  P++ TYN +++ + +  +  + K I  +M + G  P+  T+
Sbjct: 304 GHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTF 363

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ A       E+ L + R++  KG+   V  +N L+     VG    A  +FE+MKS
Sbjct: 364 NTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKS 423

Query: 404 SENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           S  C PD  T++++I  +CS  GK+ +A  +  EM  AG   +     ++I    K  R 
Sbjct: 424 S-GCTPDEVTYNTLIDNLCSL-GKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRI 481

Query: 463 DDVVRALNRLPELGIT 478
           ++     +++   GI+
Sbjct: 482 EEAEEVFDQMDLQGIS 497



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 142/314 (45%), Gaps = 2/314 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V  +N+ +    K  D   A RLF++M   G  PD VT++TLI          KA++
Sbjct: 392 SPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALD 451

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + M S GC    +TY+++ID   +   +E A  ++D+   +    +   F+TLI    
Sbjct: 452 LLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLC 511

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                D    +  +M + G++PN ITYN++L    +     +   I + MT NG   +  
Sbjct: 512 KDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVV 571

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +L+    +A   +  L + R M+ KGM+ +   YN ++        T +A  +F +M
Sbjct: 572 TYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREM 631

Query: 402 KSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
                  PD++T+  +   +C   G + EA     EM++ GF P       L +      
Sbjct: 632 TEVGE-PPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLG 690

Query: 461 RTDDVVRALNRLPE 474
             D  +RA+  + E
Sbjct: 691 MDDYFIRAIEIIIE 704



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 150/317 (47%), Gaps = 1/317 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  YN+ +    K   L++A+ + + M++RG  PD  TF+TLI      N   +A++  
Sbjct: 324 DVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLA 383

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            ++   G  PD  T++ +I+A  + G+ ++A  L++  ++     D   ++TLI    + 
Sbjct: 384 RQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSL 443

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     L++ +EM++ G   + +TYN ++D + +  R  + + ++ +M   G+S N  T+
Sbjct: 444 GKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITF 503

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+    + +  +D   +  +M  +G+Q +   YN++L      G   +A +I + M +
Sbjct: 504 NTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTM-T 562

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +   + D  T+ ++I      G+   A  +   M   G          +IQ   +   T 
Sbjct: 563 ANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTR 622

Query: 464 DVVRALNRLPELGITPD 480
           D +     + E+G  PD
Sbjct: 623 DAMNLFREMTEVGEPPD 639



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 154/334 (46%), Gaps = 7/334 (2%)

Query: 151 ALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL Y   ++    E   I YN  +    +   +  A ++ D M+  G  PD  T++ +++
Sbjct: 274 ALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVN 333

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           C   N    +A     +M   GC PD  T++++I A      +E A  L  +   +    
Sbjct: 334 CLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSP 393

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   F+ LI      G+    L ++EEMK+ G  P+ +TYN L+D +    +  +   + 
Sbjct: 394 DVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLL 453

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD 387
           KEM   G   +  TY +++    +    E+   V+ +M  +G+  +   +NTL+  +C D
Sbjct: 454 KEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKD 513

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
               D+A ++   M  SE  QP++ T++S++T    +G + +A  +   M   GFE ++ 
Sbjct: 514 -KRIDDANQLISQM-ISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVV 571

Query: 448 VLTSLIQCYGKAQRTDDVVRALN--RLPELGITP 479
              +LI    KA RT   ++ L   R+  +  TP
Sbjct: 572 TYGTLINGLCKAGRTQVALKLLRGMRIKGMRATP 605



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 156/352 (44%), Gaps = 1/352 (0%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AAL +     ++  S   +  NV +  + K   ++ A       +  G +PD +T++T +
Sbjct: 238 AALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFV 297

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N     A++  + M   G DPD  TY+ +++   + G +E A G+ ++       
Sbjct: 298 NGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCL 357

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            D   F+TLI    +    +  L++  ++   G+ P++ T+N L++ + +   P     +
Sbjct: 358 PDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRL 417

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           ++EM  +G +P+  TY +L+            L + +EM+  G   S   YNT++     
Sbjct: 418 FEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCK 477

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
               +EA E+F+ M   +    ++ TF+++I       ++ +A  + ++M+  G +PN  
Sbjct: 478 KMRIEEAEEVFDQM-DLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNI 536

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 499
              S++  Y K          L  +   G   D    G L+N + +  + ++
Sbjct: 537 TYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQV 588



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 140/340 (41%), Gaps = 20/340 (5%)

Query: 185 ERLFDDMLDR---------GVKPDNVTFS----TLISCARMNNLPNKAVEWFERMPSFGC 231
           ++LF D +D          G++ D V ++     L+  ++M  L     E  ER    G 
Sbjct: 126 QQLFVDAVDLVLNQLDPLFGIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGER----GI 181

Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
            PD +T+++++ A  RA  V  A  + +   +     D   F+TL++ +   G+    L 
Sbjct: 182 KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALR 241

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           V   M  +G  P  +T N L++   +  R        ++   NG  P+  TY + +    
Sbjct: 242 VKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLC 301

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           +  +    L V   M ++G    V  YN ++      G  +EA  I   M     C PD 
Sbjct: 302 QNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM-VERGCLPDI 360

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            TF+++I       ++ EA  +  ++   G  P+++    LI    K       +R    
Sbjct: 361 TTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEE 420

Query: 472 LPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 511
           +   G TPD+     L++ +    K  LGK ++ +++  S
Sbjct: 421 MKSSGCTPDEVTYNTLIDNLCSLGK--LGKALDLLKEMES 458



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 131/295 (44%), Gaps = 10/295 (3%)

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           VY EM   G+KP+++T+N L+  + RA +      + +EM+ +G++P+  T+ +L++ + 
Sbjct: 172 VYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFV 231

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
                +  L V   M E G   +    N L+     +G  ++A    +  + +   +PD 
Sbjct: 232 EEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQ-EIANGFEPDQ 290

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            T+++ +      G V  A  + + M++ G +P++F    ++ C  K  + ++    LN+
Sbjct: 291 ITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQ 350

Query: 472 LPELGITPDDRFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 529
           + E G  PD      L+  +    +  E L    +   K  S   Y   +L+      GD
Sbjct: 351 MVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGD 410

Query: 530 FKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQS 584
             + A  LF  +          C  D      L++N C L +LG  L++  +++S
Sbjct: 411 -PQLALRLFEEMKSS------GCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMES 458


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 144/329 (43%), Gaps = 1/329 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +  +       +  ++ ++M  RG+KPD  T+ +L++    N    +A  +F+ M 
Sbjct: 272 YNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMI 331

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  P   TY  +I  Y   G +       D         D + F+     Y   G  D
Sbjct: 332 RKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMID 391

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             ++++ +M+  G+ PN++ Y  L+D + +  R    +  + +M + G++PN   + SL+
Sbjct: 392 KAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLV 451

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
                    E    +  EM ++G+  +   +NTL+    +VG   E   +  D+      
Sbjct: 452 YGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLI-DLMEHVGV 510

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD+++++ +I+     G+  EAE +F+ M+  G  P      +L+  Y  A R DD   
Sbjct: 511 RPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYC 570

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK 496
               +   G+TP       +L+ + QT +
Sbjct: 571 LFREMLRKGVTPGVVTYNTILHGLFQTKR 599



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 156/339 (46%), Gaps = 14/339 (4%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD---RGVKPDNVTFSTLISCARMNN 214
           +L    + + Y + +K     +  ++A  L   M D   R   P+ V++S +I+      
Sbjct: 154 ELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEG 213

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
             +K    F  M   G  PD +TY+++ID   +A   + A G++ +  +  ++ +   ++
Sbjct: 214 QVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYN 273

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            LI  Y + G +   + + EEM A G+KP+  TY +LL+ + +  R  + +  +  M   
Sbjct: 274 CLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRK 333

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G+ P  +TY  L+  Y       +  S    M E G+     ++N   +  A  G  D+A
Sbjct: 334 GIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKA 393

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            +IF  M+      P+   + ++I      G+V +AE  FN+M+  G  PN+ V  SL+ 
Sbjct: 394 MDIFNKMR-QHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLV- 451

Query: 455 CYG-----KAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
            YG     K +R +++V     + + GI P+  F   L+
Sbjct: 452 -YGLCTVDKWERAEELVY---EMLDQGICPNAVFFNTLI 486



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 169/404 (41%), Gaps = 42/404 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y + +  +     L +     D M++ G+ PD+  F+   S      + +KA++ F
Sbjct: 338 KVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIF 397

Query: 224 ERMPSFGCDPDALTYSSMIDA---YGRAGNVEMAFG-----------------LYDRARN 263
            +M   G  P+ + Y ++IDA    GR  + E+ F                  +Y     
Sbjct: 398 NKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTV 457

Query: 264 EKWR-------------IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           +KW              I PNA  F+TLI      G       + + M+ +GV+P+  +Y
Sbjct: 458 DKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSY 517

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
             L+       R  + + ++  M   GLSP   TY +LL  Y  A   +D   ++REM  
Sbjct: 518 TPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLR 577

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
           KG+   V  YNT+L          EA E++ +M +S   + D +T++ ++        V 
Sbjct: 578 KGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINS-GTKCDIYTYNIILNGLCKSNCVD 636

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCL 487
           EA  MF  +   G + N+   T +I    K  R +D +     +P  G+ P+   +    
Sbjct: 637 EAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVA 696

Query: 488 LNVMTQTPKEELGKLVECVEKSNSK-----LGYVVKLLLEEQDI 526
            N++ +   EE   L   +EK+ +      L  +V+ LL   DI
Sbjct: 697 ENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDI 740



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 138/328 (42%), Gaps = 50/328 (15%)

Query: 181 LDKAERLFDDMLDRGVKPDNVT----FSTLISCARMNNLPNKAVEWFERMPSFGCD---P 233
           LD A +LFD++L    +P +V       T +S AR ++    AV  F RM     D   P
Sbjct: 30  LDDALKLFDELLHHA-RPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAP 88

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           +  TYS +I  + R G++E  F  +       WR+D  A + L+K           ++V 
Sbjct: 89  NLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVL 148

Query: 294 -EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG---LSPNWNTYASLLRA 349
            + M  +G  P+ ++Y  LL  +   KR  +   +   M D+      PN  +Y+ ++  
Sbjct: 149 LQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVING 208

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
           +      +   +++ EM ++G+                                     P
Sbjct: 209 FFTEGQVDKPYNLFLEMIDRGIP------------------------------------P 232

Query: 410 DSWTFSSMITICSCRGKV-SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           D  T++++I    C+ ++   AE +F +M++ GF+PN +    LI  Y    +  +VV+ 
Sbjct: 233 DVVTYTTVID-GLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQM 291

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPK 496
           L  +   G+ PD    G LLN + +  +
Sbjct: 292 LEEMSARGLKPDCYTYGSLLNYLCKNGR 319


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 154/319 (48%), Gaps = 1/319 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  V++Y   +    K  +++KA+ LF +M   G+  +  T++ LI     N +  +  E
Sbjct: 195 SPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFE 254

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            +E+M   G  P+  TY+ +++   + G  + AF ++D  R      +   ++TLI    
Sbjct: 255 MYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLC 314

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                +    V ++MK+ G+ PN+ITYN L+D     ++  +  ++ +++   GLSP+  
Sbjct: 315 REMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLV 374

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY  L+  + +         V +EM+E+G++ S   Y  L+   A     ++A ++   M
Sbjct: 375 TYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSM 434

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           +      PD  T+S +I     +G+++EA  +F  M+E  FEPN  +  +++  Y K   
Sbjct: 435 EEL-GLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGS 493

Query: 462 TDDVVRALNRLPELGITPD 480
           +   +R    + E  + P+
Sbjct: 494 SYRALRLFREMEEKELPPN 512



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 138/280 (49%), Gaps = 5/280 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFER 225
           YN  M    K      A ++FD+M +RGV  + VT++TLI   C  M    N+A E  ++
Sbjct: 271 YNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMK--ANEANEVMDQ 328

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S G +P+ +TY+++ID +     +  A  L    ++         ++ L+  +   G+
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGD 388

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
             G   V +EM+  G+KP+ +TY  L+DT  R+    +   +   M + GL+P+ +TY+ 
Sbjct: 389 TSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSV 448

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  +       +   +++ M EK  + +  +YNT++      G +  A  +F +M+  E
Sbjct: 449 LIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKE 508

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              P+  ++  MI +     K  EAE +  +M+++G  P+
Sbjct: 509 -LPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPS 547



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 161/339 (47%), Gaps = 14/339 (4%)

Query: 147 TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           T++  L Y T    +  +  LY V +  + + + LD +   F++M+D+G  P +  F+ L
Sbjct: 76  TSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNL 135

Query: 207 ISCARMNNLPNKAVEW--FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
           ++    ++  N   +W  F          D  ++  +I     AG +E +F L    R  
Sbjct: 136 LTFVVGSSSFN---QWWCFFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELR-- 190

Query: 265 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
           ++   PN   ++TLI      G  +   +++ EM   G+  N  TY  L+  + +     
Sbjct: 191 EFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKK 250

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           Q   +Y++M ++G+ PN +TY  ++    +    +D   V+ EM+E+G+  ++  YNTL+
Sbjct: 251 QGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLI 310

Query: 383 -AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEA 440
             +C ++   +EA E+ + MK S+   P+  T++++I   C  R K+ +A ++  ++   
Sbjct: 311 GGLCREMK-ANEANEVMDQMK-SDGINPNLITYNTLIDGFCGVR-KLGKALSLCRDLKSR 367

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
           G  P+L     L+  + K   T    + +  + E GI P
Sbjct: 368 GLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKP 406



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 101/194 (52%), Gaps = 6/194 (3%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAV 220
           S  ++ YN+ +  F K  D   A ++  +M +RG+KP  VT++ LI + AR +N+  KA+
Sbjct: 370 SPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNM-EKAI 428

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           +    M   G  PD  TYS +I  +   G +  A  L+     +K+  +   ++T++  Y
Sbjct: 429 QLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGY 488

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G+    L ++ EM+   + PN+ +Y  +++ + + ++  + + + ++M D+G+ P+ 
Sbjct: 489 CKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPS- 547

Query: 341 NTYASLLRAYGRAR 354
               S+L    RA+
Sbjct: 548 ---DSILNLISRAK 558



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 98/217 (45%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I YN  +  F   R L KA  L  D+  RG+ P  VT++ L+S        + A +  +
Sbjct: 338 LITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVK 397

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  P  +TY+ +ID + R+ N+E A  L           D + +S LI  +   G
Sbjct: 398 EMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKG 457

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +    +++ M     +PN + YN ++    +    ++   +++EM +  L PN  +Y 
Sbjct: 458 RMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYR 517

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
            ++    + R  ++   +  +M + G+  S ++ N +
Sbjct: 518 YMIEVLCKERKSKEAEGLVEKMIDSGIGPSDSILNLI 554


>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
 gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
          Length = 453

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 164/343 (47%), Gaps = 38/343 (11%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A  +F+ ++D G KP  +T++TL++      L    +    ++   G  PD++ ++S+I
Sbjct: 31  EAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNSII 90

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
           +A+  +GN++ A  L+ + +    +   + F+TLIK YG AG  +  L + E ++  GVK
Sbjct: 91  NAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVK 150

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG----------- 351
           PN  TYN L+      +   +   +  +M  +G+ P+  TY +L RAY            
Sbjct: 151 PNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEM 210

Query: 352 -------RARYGEDTLS------------------VYREMKEKGMQLSVTLYNTLLAMCA 386
                  R    E T S                  V+R MKE G+  ++ ++N+L+    
Sbjct: 211 ILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFR-MKELGVLPNLFVFNSLIKGFL 269

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           D   T+   E+   M+ +   +PD  TFS+++   S  G++ + + +FN+M++A  EP++
Sbjct: 270 DTMDTEGVDEVLTLMEEN-GVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDI 328

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
              + L + Y +A   +     L  + + G+ P+   C  +++
Sbjct: 329 HAFSILAKGYVRAGEPEKAESILTSMRKYGVHPNVVICTTVIS 371



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 159/385 (41%), Gaps = 71/385 (18%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I Y   +    + +      RL   + + G+KPD++ F+++I+    +    +A++ F 
Sbjct: 48  LITYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNSIINAFSESGNMKEAMKLFR 107

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M   GC P   T++++I  YG AG  E A  L +  ++   + +   ++ L++ +    
Sbjct: 108 KMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCNKE 167

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNL-----------------LDTMGRAKRPWQ---- 323
           N +   N+  +M A G++P+ +TYN L                 L+ + R   P +    
Sbjct: 168 NMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTCS 227

Query: 324 --VKTIYKE------------MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
             V    KE            M + G+ PN   + SL++ +      E    V   M+E 
Sbjct: 228 IIVNGYCKEGNMVDASRFVFRMKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEEN 287

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM------------ 417
           G++  V  ++T++   +  G  D+  EIF DM  +E  +PD   FS +            
Sbjct: 288 GVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAE-IEPDIHAFSILAKGYVRAGEPEK 346

Query: 418 ----------------ITICSC-------RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
                           + IC+         GK+  A  ++ +M E G  PNL    +LI 
Sbjct: 347 AESILTSMRKYGVHPNVVICTTVISGWCSAGKMEHAMKVYEKMCEIGVSPNLKTYETLIW 406

Query: 455 CYGKAQRTDDVVRALNRLPELGITP 479
            YG+A++       L  + E G+ P
Sbjct: 407 GYGEAKQPLKAEELLQVMEEKGVFP 431



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 120/261 (45%), Gaps = 12/261 (4%)

Query: 99  YNSLVKLAADLDSCSATEDDVFSVL-RCLGDDFLEQDCVIILNNMTNPDTAALA--LTYF 155
           YN+L +  A+       E+ +  +L R +  +  E+ C II+N          A    + 
Sbjct: 191 YNTLARAYAEKGETIRAEEMILEMLNRRVTPN--ERTCSIIVNGYCKEGNMVDASRFVFR 248

Query: 156 TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
             +L     + ++N  +K F    D +  + +   M + GV+PD VTFST+++       
Sbjct: 249 MKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGR 308

Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF-- 273
            +K  E F  M     +PD   +S +   Y RAG  E A  +    R  K+ + PN    
Sbjct: 309 MDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMR--KYGVHPNVVIC 366

Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333
           +T+I  + +AG  +  + VYE+M  IGV PN+ TY  L+   G AK+P + + + + M +
Sbjct: 367 TTVISGWCSAGKMEHAMKVYEKMCEIGVSPNLKTYETLIWGYGEAKQPLKAEELLQVMEE 426

Query: 334 NGLSPNWNT---YASLLRAYG 351
            G+ P   T    A   RA G
Sbjct: 427 KGVFPKKGTMQLIADAWRAIG 447



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 113/232 (48%), Gaps = 1/232 (0%)

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           G    A  +++   +E  +     ++TL+        F   L +  +++  G+KP+ I +
Sbjct: 27  GKPREAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILF 86

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N++++    +    +   ++++M ++G  P  +T+ +L++ YG A   E+ L +   +++
Sbjct: 87  NSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQD 146

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G++ +   YN L+    +    +EA+ +   M +S   QPD+ T++++    + +G+  
Sbjct: 147 GGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVAS-GMQPDAVTYNTLARAYAEKGETI 205

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            AE M  EML     PN    + ++  Y K     D  R + R+ ELG+ P+
Sbjct: 206 RAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPN 257



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 107/243 (44%), Gaps = 35/243 (14%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNN------- 214
           + + YN   + + +  +  +AE +  +ML+R V P+  T S +++  C   N        
Sbjct: 187 DAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFV 246

Query: 215 --------LPNKAV------------------EWFERMPSFGCDPDALTYSSMIDAYGRA 248
                   LPN  V                  E    M   G  PD +T+S++++A+  A
Sbjct: 247 FRMKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSA 306

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           G ++    +++     +   D +AFS L K Y  AG  +   ++   M+  GV PN++  
Sbjct: 307 GRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKYGVHPNVVIC 366

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
             ++     A +      +Y++M + G+SPN  TY +L+  YG A+       + + M+E
Sbjct: 367 TTVISGWCSAGKMEHAMKVYEKMCEIGVSPNLKTYETLIWGYGEAKQPLKAEELLQVMEE 426

Query: 369 KGM 371
           KG+
Sbjct: 427 KGV 429



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 17/80 (21%), Positives = 44/80 (55%)

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + ++ +   +GK  EA ++FN +++ G +P L   T+L+    + +    ++R ++++ E
Sbjct: 17  TKLMNVLIGKGKPREAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEE 76

Query: 475 LGITPDDRFCGCLLNVMTQT 494
            G+ PD      ++N  +++
Sbjct: 77  NGMKPDSILFNSIINAFSES 96


>gi|297736301|emb|CBI24939.3| unnamed protein product [Vitis vinifera]
          Length = 485

 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 139/278 (50%), Gaps = 6/278 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC---ARMNNLPNKAV 220
           +V  Y++ +K        D  ER+F +M   G++   VT++T+I     A M  L   ++
Sbjct: 198 DVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELMESSL 257

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
              E + S  C PD  T +S I AYG +G +E     YD  +    R D   F+ LI+ Y
Sbjct: 258 T--EMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRSY 315

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           G A  ++  ++V E MK     P ++T+N +++  GR     +++  + +M   G+ PN 
Sbjct: 316 GKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNS 375

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY SL+ AY +A Y +   S+ R+++   + L    +N +L+     G  +   E+F  
Sbjct: 376 ITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLV 435

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           MK    C+PD+ TF++MI   + +G +  A+ +   M+
Sbjct: 436 MK-ERKCKPDNITFATMIQAYNAQGMIEAAQNLEVNMI 472



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 143/319 (44%), Gaps = 4/319 (1%)

Query: 197 KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF- 255
           +P   T++ L+        P +A   FE M S G  P    Y++++ AYG +G ++ AF 
Sbjct: 125 EPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGHSGQLDKAFC 184

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            + D       + D   +S LIK   T G FD    ++ EM  +G++ + +TYN ++D  
Sbjct: 185 TVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVTYNTIIDGY 244

Query: 316 GRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           G+A     +++   EM ++G   P+  T  S + AYG +   E     Y E +  G++  
Sbjct: 245 GKADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQLMGIRPD 304

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           +  +N L+         ++   + E MK      P   TF+ +I +    G + + E  F
Sbjct: 305 IKTFNILIRSYGKACMYEKMVSVMEFMKK-RFYSPTIVTFNIVIEMFGRVGNIEKMEEFF 363

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
            +M   G +PN     SL+  Y KA     V   L ++    +T D  F  C+L+   Q 
Sbjct: 364 LKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQA 423

Query: 495 PK-EELGKLVECVEKSNSK 512
              E +G+L   +++   K
Sbjct: 424 GDVERMGELFLVMKERKCK 442


>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
 gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
 gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
 gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
 gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 148/307 (48%), Gaps = 1/307 (0%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           +++  +D GVK +  T S L++         KA E   R  + G  P+ + Y++MID Y 
Sbjct: 341 VYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYC 400

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           R G++  A    +    +  + D  A++ LI+ +   G  +       +MK  GV P++ 
Sbjct: 401 RKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVE 460

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TYN L+   GR     +   I KEM DNG  PN  +Y +L+    +     +   V R+M
Sbjct: 461 TYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDM 520

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
           +++G+   V +YN L+  C   G  ++AF   ++M   +  + +  T++++I   S  GK
Sbjct: 521 EDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEM-LKKGIELNLVTYNTLIDGLSMTGK 579

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
           +SEAE +  E+   G +P++F   SLI  YG A      +     +   GI P  +    
Sbjct: 580 LSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHL 639

Query: 487 LLNVMTQ 493
           L+++ T+
Sbjct: 640 LISLCTK 646



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 168/388 (43%), Gaps = 17/388 (4%)

Query: 118 DVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVF 175
           D+F  LR  G         ++L+++       + +  F N L++       +Y   ++  
Sbjct: 130 DLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAA 189

Query: 176 RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
            K  D+ K   LF+ M    + P    ++ LI         N A + F+ M +    P  
Sbjct: 190 VKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSL 249

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           +TY+++ID Y +AGN E +F + +R + +        F+TL+K    AG  +   NV +E
Sbjct: 250 ITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKE 309

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GR 352
           MK +G  P+  T++ L D     ++      +Y+   D+G+  N  T + LL A    G+
Sbjct: 310 MKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGK 369

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK----SSENCQ 408
               E+ L   REM  KG+  +  +YNT++      GY  +   +   MK      +  +
Sbjct: 370 IEKAEEILG--REMA-KGLVPNEVIYNTMID-----GYCRKGDLVGARMKIEAMEKQGMK 421

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD   ++ +I      G++  AE   N+M   G  P++     LI  YG+    D     
Sbjct: 422 PDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDI 481

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPK 496
           L  + + G  P+    G L+N + +  K
Sbjct: 482 LKEMEDNGTMPNVVSYGTLINCLCKGSK 509



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 132/279 (47%), Gaps = 7/279 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y   +    K   L +A+ +  DM DRGV P    ++ LI           A  + +
Sbjct: 494 VVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSK 553

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G + + +TY+++ID     G +  A  L      +  + D   +++LI  YG AG
Sbjct: 554 EMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAG 613

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N   C+ +YEEMK  G+KP + TY +LL ++   +     + ++ EM+   L P+   Y 
Sbjct: 614 NVQRCIALYEEMKRSGIKPTLKTY-HLLISLCTKEGIELTERLFGEMS---LKPDLLVYN 669

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            +L  Y      E   ++ ++M EK + L  T YN+L+     VG   E   + ++M + 
Sbjct: 670 GVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAR 729

Query: 405 ENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGF 442
           E  +P++ T++ ++   C  +  +S A   + EM E GF
Sbjct: 730 E-MEPEADTYNIIVKGHCEVKDYMS-AYVWYREMQEKGF 766



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/245 (20%), Positives = 104/245 (42%), Gaps = 1/245 (0%)

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A  L+   RNE      ++ + L+        F   +NV+  +     +P+   Y   + 
Sbjct: 128 AADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQ 187

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
              +     +   ++  M  + + P+   Y  L+    + +   D   ++ EM  + +  
Sbjct: 188 AAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLP 247

Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           S+  YNTL+      G  +++F++ E MK +++ +P   TF++++      G V +AE +
Sbjct: 248 SLITYNTLIDGYCKAGNPEKSFKVRERMK-ADHIEPSLITFNTLLKGLFKAGMVEDAENV 306

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
             EM + GF P+ F  + L   Y   ++ +  +       + G+  +   C  LLN + +
Sbjct: 307 LKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCK 366

Query: 494 TPKEE 498
             K E
Sbjct: 367 EGKIE 371


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 147/300 (49%), Gaps = 1/300 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
            + A R   +ML R ++P++   +TL+         + AVE + R+   G   + +T ++
Sbjct: 437 FESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNA 496

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I    + GN++ A  L  +     + +D   ++TLI      G  +    +  EM   G
Sbjct: 497 LIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQG 556

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           ++P+  TYN L+  M R  +  +   ++ E     L PN  TY  ++  Y +A   E+  
Sbjct: 557 IEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGE 616

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            ++ E+  + ++L+  +YNTL+      G T EAF++ +DM+ S+   P + T+SS+I  
Sbjct: 617 KLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMR-SKGIPPTTATYSSLIHG 675

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               G++ +A+ + +EM + G  PN+   T+LI  Y K  + D VV  L  +    I P+
Sbjct: 676 MCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPN 735



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 146/301 (48%), Gaps = 3/301 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWF 223
           +I Y+V +    K    ++A  +  + L++G  P+ V ++TLI    +M NL + A+   
Sbjct: 316 LITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGD-ALRIR 374

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M S G +P+++T +S+I  + + G +E A  + +   +  + I+P AF+T+I      
Sbjct: 375 GDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMN 434

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
             F+  L    EM    ++PN      L+  + +  +      ++  + + G   N  T 
Sbjct: 435 SRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTT 494

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+    +    ++ + + ++M E+G  L    YNTL++ C   G  +E F++  +M  
Sbjct: 495 NALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEM-V 553

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +  +PD++T++ +I      GK+ EA  ++NE       PN++    +I  Y KA + +
Sbjct: 554 KQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIE 613

Query: 464 D 464
           +
Sbjct: 614 E 614



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 135/305 (44%), Gaps = 4/305 (1%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K  +L+K+  +F+ M  +GV PD   FST I+          A++ F  M   G  P+ +
Sbjct: 224 KANELEKSYWVFETM-RQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVV 282

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           TY+++I    + GN++ AF   ++   +        +S LI        F+   +V +E 
Sbjct: 283 TYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKET 342

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
              G  PN + YN L+D   +         I  +M   G++PN  T  S+++ + +    
Sbjct: 343 LEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQM 402

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
           E    +  EM  +G  ++   + T++  +C +  + + A     +M    N +P+    +
Sbjct: 403 EQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRF-ESALRFLREM-LLRNMRPNDGLLT 460

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           +++      GK S+A  ++  +LE GF  NL    +LI    K     + VR L ++ E 
Sbjct: 461 TLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLER 520

Query: 476 GITPD 480
           G   D
Sbjct: 521 GFVLD 525



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 178/422 (42%), Gaps = 38/422 (9%)

Query: 133 QDCVIILNNMTNPDTAALALTYF-TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDM 191
           + C  +L+++   +    +   F T +   S +V L++  +  F K   ++ A +LF DM
Sbjct: 213 KTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDM 272

Query: 192 LDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
              GV P+ VT++ LI    +  NL ++A  + E+M   G +   +TYS +I+   +   
Sbjct: 273 EKLGVSPNVVTYNNLIHGLCKHGNL-DEAFRFKEKMVKDGVNATLITYSVLINGLMKLEK 331

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
              A  +      + +  +   ++TLI  Y   GN    L +  +M + G+ PN +T N+
Sbjct: 332 FNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNS 391

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           ++    +  +  Q + I +EM   G S N   + +++         E  L   REM  + 
Sbjct: 392 IIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRN 451

Query: 371 MQLSVTLYNTLL-AMCADVGYTDEA---FEIFE---------------DMKSSENCQP-- 409
           M+ +  L  TL+  +C +  ++D     F + E                +  + N Q   
Sbjct: 452 MRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAV 511

Query: 410 -------------DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
                        D  T++++I+ C   GKV E   +  EM++ G EP+ F    LI   
Sbjct: 512 RLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGM 571

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECVEKSNSKLGY 515
            +  + D+ V   N      + P+    G +++   +  K E G KL   +   N +L  
Sbjct: 572 CRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNS 631

Query: 516 VV 517
           VV
Sbjct: 632 VV 633



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 132/290 (45%), Gaps = 3/290 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFE 224
           I YN  +    K   +++  +L  +M+ +G++PD  T++ LI    R+  L ++AV  + 
Sbjct: 527 ITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKL-DEAVNLWN 585

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
              S    P+  TY  MID Y +A  +E    L+     +   ++   ++TLI+ Y   G
Sbjct: 586 ECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNG 645

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N      ++++M++ G+ P   TY++L+  M    R    K +  EM   GL PN   Y 
Sbjct: 646 NTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYT 705

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+  Y +    +  ++V +EM    +  +   Y  ++   +  G    A ++  +M   
Sbjct: 706 ALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEM-VG 764

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           +   PD+ T++ +       GK+ E   + + M + G   +    T+L+ 
Sbjct: 765 KGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVH 814



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 101/218 (46%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  Y V +  + K   +++ E+LF ++L + ++ ++V ++TLI     N    +A +  +
Sbjct: 596 VYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHD 655

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M S G  P   TYSS+I      G +E A  L D  R E    +   ++ LI  Y   G
Sbjct: 656 DMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLG 715

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  +NV +EM +  + PN ITY  ++D   ++        +  EM   G+ P+  TY 
Sbjct: 716 QMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYN 775

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
            L   + +    E+   +   M ++G+ L    Y TL+
Sbjct: 776 VLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLV 813



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           + + V+R +  KG+  +V     LL+        ++++ +FE M+  +   PD + FS+ 
Sbjct: 195 NAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMR--QGVSPDVYLFSTA 252

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I      GKV +A  +F +M + G  PN+    +LI    K    D+  R   ++ + G+
Sbjct: 253 INAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGV 312


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 151/324 (46%), Gaps = 2/324 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  V++Y   +    K  ++  A+ LF  M   G+ P+  T+S L++      L  +  +
Sbjct: 190 SPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQ 249

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            +E M   G  P+A  Y+ +I  Y   G V+ AF ++   R +        ++ LI    
Sbjct: 250 MYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLC 309

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
               F   + +  ++  +G+ PN++TYN L++     ++      ++ ++  +GLSP   
Sbjct: 310 RGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLV 369

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +L+  Y +       L + +EM+E+ +  S   Y  L+   A + +T++A E+   M
Sbjct: 370 TYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLM 429

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           + S    PD +T+S ++      G + EA  +F  + E   +PN  +  ++I  Y K   
Sbjct: 430 EKS-GLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGS 488

Query: 462 TDDVVRALNRLPELGITPD-DRFC 484
           +   +R LN + + G+ P+   FC
Sbjct: 489 SYRALRLLNEMVQSGMVPNVASFC 512



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 121/243 (49%), Gaps = 6/243 (2%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L +  NK+  S  ++ YN+ +  F   R +D A RLF+ +   G+ P  VT++TLI+
Sbjct: 317 AVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIA 376

Query: 209 C-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
             +++ NL   A++  + M      P  +TY+ +IDA+ R  + E A  ++     EK  
Sbjct: 377 GYSKVENLAG-ALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLM--EKSG 433

Query: 268 IDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           + P+ ++  + L+G    GN      +++ +  + ++PN + YN ++    +    ++  
Sbjct: 434 LVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRAL 493

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            +  EM  +G+ PN  ++ S +    R    ++   +  +M   G++ SV+LY  +  + 
Sbjct: 494 RLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMVHKVK 553

Query: 386 ADV 388
            DV
Sbjct: 554 GDV 556



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 6/187 (3%)

Query: 307 TYNNLLDTMGRA----KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           TY  L DT+  A        Q  T    M   G  P  NT+ +LL    R+ Y +    +
Sbjct: 87  TYTPLYDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWI 146

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
           + E+K K + L    +  ++  C + GY  + F +   M       P+   ++++I  C 
Sbjct: 147 FNELKSK-VVLDAYSFGIMIKGCCEAGYFVKGFRLLA-MLEEFGLSPNVVIYTTLIDGCC 204

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
             G V  A+ +F +M   G  PN    + L+  + K     +  +    +   GI P+  
Sbjct: 205 KDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAY 264

Query: 483 FCGCLLN 489
              CL++
Sbjct: 265 AYNCLIS 271


>gi|125563733|gb|EAZ09113.1| hypothetical protein OsI_31378 [Oryza sativa Indica Group]
          Length = 618

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 165/377 (43%), Gaps = 40/377 (10%)

Query: 136 VIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           VI L+ M  PD A   L+ F  +L+    +   N  +    K   L +   LFD+ML RG
Sbjct: 113 VIALSQMALPDEA---LSVF-GRLRELPALPACNAILDGLVKAHMLARVWELFDEMLGRG 168

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           + P  VT++TLI+  R      KA E +++M +   DP+ +TY++MI A      +  A 
Sbjct: 169 MVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMIYALCEEDCIGDAE 228

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
           GL+   +    R +   ++ L+  +    N    L  Y ++   G+ PN + +  L+D +
Sbjct: 229 GLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLIDGL 288

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE---------- 365
            +A R  + K I+ +M    ++P    Y SL+    R+ Y ++ L+ ++E          
Sbjct: 289 CKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKELRPDE 348

Query: 366 -------------------------MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
                                    M++ G+ L+   YN L+      G  DEA      
Sbjct: 349 FTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTR 408

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M S    +P+  T+SS+I   S  G++  A A++ EM+  G EPN+   T+LI  + K  
Sbjct: 409 M-SEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNG 467

Query: 461 RTDDVVRALNRLPELGI 477
             D        + E GI
Sbjct: 468 DMDAAFWLQKEMEEKGI 484



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 144/316 (45%), Gaps = 7/316 (2%)

Query: 146 DTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF 203
           D    AL ++ + LK       +++   +    K   + +A+ +F DM    V P    +
Sbjct: 257 DNIKHALVFYYDLLKCGLVPNDVIFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVY 316

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
           ++LI  A  +    +A+ +F+ +      PD  T S ++      G +++A    +  + 
Sbjct: 317 NSLIHGAFRSGYAQEALAFFQEIIRKELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQ 376

Query: 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
               ++  A++ LI  Y  +GN D  L     M  +GV+PN++TY++L+D   +      
Sbjct: 377 SGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEI 436

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL- 382
              IY EM   G+ PN  TY +L+  + +    +    + +EM+EKG+  +    + L+ 
Sbjct: 437 AMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVD 496

Query: 383 AMCADVGYTDEAFEIFE---DMKSSENCQ-PDSWTFSSMITICSCRGKVSEAEAMFNEML 438
            +C +    D    I E     KS +N    +S T+ ++I      G+ +EA   F+ M 
Sbjct: 497 GLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMR 556

Query: 439 EAGFEPNLFVLTSLIQ 454
           ++G  P+ F  T +I+
Sbjct: 557 DSGMVPDRFTYTLVIR 572



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%)

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L++A+  AR  E    ++ EM  +GM  SV  YNTL+  C   G   +A+E+++ M  +
Sbjct: 147 GLVKAHMLARVWE----LFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQM-VA 201

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               P+  T+++MI        + +AE +F EM EAG  PNL+   +L+  + K      
Sbjct: 202 RRIDPNVVTYTTMIYALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKH 261

Query: 465 VVRALNRLPELGITPDD 481
            +     L + G+ P+D
Sbjct: 262 ALVFYYDLLKCGLVPND 278



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 102/226 (45%), Gaps = 8/226 (3%)

Query: 292 VYEEMKAIGVKPNMITYNNLLDT---MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
           +++EM   G+ P+++TYN L++     G   + W+V   + +M    + PN  TY +++ 
Sbjct: 160 LFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEV---WDQMVARRIDPNVVTYTTMIY 216

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A        D   ++ EMKE GM+ ++  YN L++          A   + D+       
Sbjct: 217 ALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKC-GLV 275

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           P+   F+++I       +++EA+ +F +M      P + V  SLI    ++    + +  
Sbjct: 276 PNDVIFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAF 335

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECVEKSNSKL 513
              +    + PD+  C  ++  +    + ++  + +E +++S   L
Sbjct: 336 FQEIIRKELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIAL 381



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 47/236 (19%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           +  A R  + M   G+  +   ++ LI    +  NL ++A+    RM   G +P+ +TYS
Sbjct: 364 MQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNL-DEALVTCTRMSEVGVEPNVVTYS 422

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMK 297
           S+ID + + G +E+A  +Y     +   ++PN   ++ LI  +   G+ D    + +EM+
Sbjct: 423 SLIDGHSKNGEMEIAMAIYTEMVAKG--VEPNVVTYTALIHGHAKNGDMDAAFWLQKEME 480

Query: 298 AIGVKPNMITYNNLLDTMGRAKR--------------------PWQVKTI---------- 327
             G+  N IT + L+D + R  R                    P    ++          
Sbjct: 481 EKGIYSNAITVSVLVDGLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLY 540

Query: 328 ----YKE-------MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
               Y E       M D+G+ P+  TY  ++R      Y  + + +Y +M + G++
Sbjct: 541 IDGQYNEACHFFSCMRDSGMVPDRFTYTLVIRGLCMLGYVLNAMMLYADMVKVGVK 596


>gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/419 (21%), Positives = 188/419 (44%), Gaps = 42/419 (10%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ Y   +      +  D    +   + + G++PD++ F+ +I+    +    +A+++F 
Sbjct: 107 LVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFW 166

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD-RARNEKWRIDPNAFSTLIKLYGTA 283
           +M   G  P   T++++I  YG AG  E +  L +  +++E  R +   ++ L++ +   
Sbjct: 167 KMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNK 226

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            N     NV  +M A G++P+ +TYN +     +     Q + I  EM ++ + PN  T 
Sbjct: 227 KNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTC 286

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD---------------- 387
             ++  Y +    ++ L     MK+ G+Q ++ ++N+L+    D                
Sbjct: 287 CIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEE 346

Query: 388 -------------------VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
                               G+ D+  EIF+DM  +   QPD+  +S +       G+  
Sbjct: 347 FGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKA-RIQPDAHVYSILAKGYVRAGEPE 405

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           +AE + N M+++GF PN+ + T++I  +  A R +  ++   ++ E GI P+ +    L+
Sbjct: 406 KAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLI 465

Query: 489 ---NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 544
                  Q  K E  ++++ +E+ N +      LL+ E       KKEA  + +++  +
Sbjct: 466 WGYGEARQPWKSE--EVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVKNE 522



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 172/373 (46%), Gaps = 13/373 (3%)

Query: 117 DDVFSVLRCLGDDFLEQDCVI---ILNNMTNPDTAALALTYFTNKLKASKE---VILYNV 170
           D + S++  + ++ +E D +    ++N  +       A+ YF  K+K S        +N 
Sbjct: 124 DSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFW-KMKESGSKPTTSTFNT 182

Query: 171 TMKVFRKCRDLDKAERLFDDM-LDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMP 227
            +K +    + +++++L + M  D  V+P+  T++ L+   C + N +  KA     +M 
Sbjct: 183 LIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIM--KAWNVVYKMV 240

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  PDA+TY+++  AY + G    A G+    +N   + +      +I  Y   G   
Sbjct: 241 ASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIK 300

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L     MK +G++PN++ +N+L+     A     V  +   M + G+ P+  T+++++
Sbjct: 301 EALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIM 360

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A+  A + +    ++ +M +  +Q    +Y+ L       G  ++A EI   M  S   
Sbjct: 361 NAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKS-GF 419

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+   F+++I      G++  A  +F +M E G  PNL    +LI  YG+A++      
Sbjct: 420 HPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEE 479

Query: 468 ALNRLPELGITPD 480
            L  + E  + P+
Sbjct: 480 VLQIMEEFNVQPE 492



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 128/304 (42%), Gaps = 21/304 (6%)

Query: 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
           CR +    +L + M+++G                    P +     + +   G  P  +T
Sbjct: 69  CRTVRSRTKLMNIMIEKG-------------------RPQEVQSILDSIIEGGHKPSLVT 109

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           Y++++ A     + +    +  +        D   F+ +I  +  +GN    +  + +MK
Sbjct: 110 YTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMK 169

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT-DNGLSPNWNTYASLLRAYGRARYG 356
             G KP   T+N L+   G A  P + + + + M+ D  + PN  TY  L+RA+   +  
Sbjct: 170 ESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNI 229

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
               +V  +M   G+Q     YNT+    A  G   +A  I  +M++S N QP+  T   
Sbjct: 230 MKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNS-NVQPNERTCCI 288

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I      GK+ EA      M + G +PNL V  SLI+ +  A   D V   L  + E G
Sbjct: 289 IIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFG 348

Query: 477 ITPD 480
           + PD
Sbjct: 349 VKPD 352



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 106/238 (44%), Gaps = 5/238 (2%)

Query: 132 EQDCVIILNNMTNPDT--AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFD 189
           E+ C II+           AL   Y    L     ++++N  +K F    D D    +  
Sbjct: 283 ERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLT 342

Query: 190 DMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
            M + GVKPD +TFST+++        +K  E F+ M      PDA  YS +   Y RAG
Sbjct: 343 LMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAG 402

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
             E A  + +      +  +   F+T+I  + +AG  +  + ++E+M   G+ PN+ T+ 
Sbjct: 403 EPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFE 462

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT---YASLLRAYGRARYGEDTLSVYR 364
            L+   G A++PW+ + + + M +  + P   T    A   RA G  +     LS  +
Sbjct: 463 TLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVK 520



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 110/231 (47%), Gaps = 4/231 (1%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV-EWFERMPSFGCDPD 234
           C++  + +A +    M D G++P+ V F++LI    ++ +    V E    M  FG  PD
Sbjct: 294 CKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIK-GFIDAVDRDGVNEVLTLMEEFGVKPD 352

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
            +T+S++++A+  AG ++    ++D     + + D + +S L K Y  AG  +    +  
Sbjct: 353 VITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILN 412

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
            M   G  PN++ +  +++    A R      I+++M + G++PN  T+ +L+  YG AR
Sbjct: 413 AMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEAR 472

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
               +  V + M+E  +Q   T    +       G   EA  I   +K+ E
Sbjct: 473 QPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVKNEE 523



 Score = 40.0 bits (92), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 16/80 (20%), Positives = 43/80 (53%)

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + ++ I   +G+  E +++ + ++E G +P+L   T+L+      +  D +   ++++ E
Sbjct: 76  TKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEE 135

Query: 475 LGITPDDRFCGCLLNVMTQT 494
            G+ PD  F   ++N  +++
Sbjct: 136 NGMEPDSIFFNAVINAFSES 155


>gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa]
 gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 149/325 (45%), Gaps = 9/325 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +   + ++     ++    +F  M+  G+KP+ V+++TL+     + +  +A+  F
Sbjct: 311 DVVTFTSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYASHGMNKEALSVF 370

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             + + G  PD ++Y+S++++YGR+   + A  +++  + +K + +  +++ +I  YG+ 
Sbjct: 371 NAIKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMIDAYGSN 430

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     + V  EM+  G+ PN ++   LL   GR  R   +  + +      +  N   Y
Sbjct: 431 GLLAEAVEVLREMEQDGIYPNAVSICTLLAACGRCSRKVNIDVVLQAAERRHIKLNTIAY 490

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S + +Y      E   S+YR M++  +      +  L++ C  +    EA E   +M  
Sbjct: 491 NSAIGSYMNVGEFEKATSMYRSMRKSKVIPDAVTFTVLISGCCKMTKYCEALEFLSEMMD 550

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +           M       GK++EAE+MFN+M  AG  P++   T ++  Y  A+   
Sbjct: 551 LK---------IPMTKEAYSSGKITEAESMFNKMKMAGCSPDVVTYTMMLHAYNAAEHWK 601

Query: 464 DVVRALNRLPELGITPDDRFCGCLL 488
                L  + E  I PD   C  L+
Sbjct: 602 KACALLQEMEEYNIQPDTIACSALM 626



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 128/265 (48%), Gaps = 7/265 (2%)

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEE 295
           Y+ MI  + R    + A GL+     +KWR  P+A +   LI  +G +G +   +N+ E+
Sbjct: 138 YNMMIRLHARHNWTDQARGLFFEM--QKWRCKPDAETCNALINAHGRSGQWRWAMNIMED 195

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M    + P+  TYNNL++  G +    +   + K+MT+NG+ P+  T+  +L AY     
Sbjct: 196 MLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTENGVGPDLVTHNIILSAYKTGAQ 255

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTF 414
               LS +  MK   ++   T  N ++     +G  ++A  IF+ M+     C PD  TF
Sbjct: 256 YAKALSYFELMKGTNIRPDTTTLNIIIYCLTKLGQYEKAIGIFKSMREKRAECHPDVVTF 315

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +S+I + S  G++    A+F+ M+  G +PN+    +L+  Y       + +   N +  
Sbjct: 316 TSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYASHGMNKEALSVFNAIKN 375

Query: 475 LGITPDDRFCGCLLNVM--TQTPKE 497
            G+ PD      LLN    +Q PK+
Sbjct: 376 SGLRPDVVSYTSLLNSYGRSQQPKK 400



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 106/495 (21%), Positives = 212/495 (42%), Gaps = 20/495 (4%)

Query: 96  DTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNP---DTAALAL 152
           D   + +V+   +LD  S   DDV  +L      F  ++  +++  +T     + + L  
Sbjct: 66  DWSVSQVVQKVLELDHKS---DDVEGLLNRWVGRFARKNFPLLIKEITQKGSIEHSILVF 122

Query: 153 TYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARM 212
            +  N+        +YN+ +++  +    D+A  LF +M     KPD  T + LI+    
Sbjct: 123 RWMKNQRNYCARTDIYNMMIRLHARHNWTDQARGLFFEMQKWRCKPDAETCNALINAHGR 182

Query: 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
           +     A+   E M      P   TY+++I+A G +GN   A  L  +        D   
Sbjct: 183 SGQWRWAMNIMEDMLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTENGVGPDLVT 242

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
            + ++  Y T   +   L+ +E MK   ++P+  T N ++  + +  +  +   I+K M 
Sbjct: 243 HNIILSAYKTGAQYAKALSYFELMKGTNIRPDTTTLNIIIYCLTKLGQYEKAIGIFKSMR 302

Query: 333 DNGLS--PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           +      P+  T+ S++  Y      E+  +V+  M  +G++ ++  YNTL+   A  G 
Sbjct: 303 EKRAECHPDVVTFTSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYASHGM 362

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
             EA  +F  +K+S   +PD  +++S++       +  +A  +F  M     +PN+    
Sbjct: 363 NKEALSVFNAIKNS-GLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYN 421

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPKEELGKLVECVEKS 509
           ++I  YG      + V  L  + + GI P+    C  L      + K  +  +++  E+ 
Sbjct: 422 AMIDAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTLLAACGRCSRKVNIDVVLQAAERR 481

Query: 510 NSKLGYVV--KLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENAC 567
           + KL  +     +    ++ G+F+K AT ++ S+ K         + D      L+   C
Sbjct: 482 HIKLNTIAYNSAIGSYMNV-GEFEK-ATSMYRSMRKS------KVIPDAVTFTVLISGCC 533

Query: 568 KLLELGLTLEVYTDI 582
           K+ +    LE  +++
Sbjct: 534 KMTKYCEALEFLSEM 548



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 125/319 (39%), Gaps = 66/319 (20%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AL+ F N +K S    +V+ Y   +  + + +   KA  +F+ M    +KP+ V+++ +I
Sbjct: 366 ALSVF-NAIKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMI 424

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALT------------------------------ 237
                N L  +AVE    M   G  P+A++                              
Sbjct: 425 DAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTLLAACGRCSRKVNIDVVLQAAERRHIK 484

Query: 238 -----YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI--------------- 277
                Y+S I +Y   G  E A  +Y   R  K   D   F+ LI               
Sbjct: 485 LNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIPDAVTFTVLISGCCKMTKYCEALEF 544

Query: 278 ------------KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
                       K   ++G      +++ +MK  G  P+++TY  +L     A+   +  
Sbjct: 545 LSEMMDLKIPMTKEAYSSGKITEAESMFNKMKMAGCSPDVVTYTMMLHAYNAAEHWKKAC 604

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM +  + P+    ++L+RA+ +       L +   M+EK + LS  ++  +++ C
Sbjct: 605 ALLQEMEEYNIQPDTIACSALMRAFNKGGDPSKVLILAEFMREKEIPLSDAIFFEMVSAC 664

Query: 386 ADVGYTDEAFEIFEDMKSS 404
           + +       E+ + M+SS
Sbjct: 665 SLLRDWRTTIELIKLMESS 683



 Score = 43.9 bits (102), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 40/211 (18%), Positives = 91/211 (43%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           + +AE +F+ M   G  PD VT++ ++          KA    + M  +   PD +  S+
Sbjct: 565 ITEAESMFNKMKMAGCSPDVVTYTMMLHAYNAAEHWKKACALLQEMEEYNIQPDTIACSA 624

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           ++ A+ + G+      L +  R ++  +    F  ++       ++   + + + M++  
Sbjct: 625 LMRAFNKGGDPSKVLILAEFMREKEIPLSDAIFFEMVSACSLLRDWRTTIELIKLMESSF 684

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
              ++   N LL  +G++ +   +  ++ ++  +G   N NTY+ LL+           +
Sbjct: 685 SVVSIGLLNQLLHLLGKSGKIESMMKLFYKIIGSGAEINCNTYSILLKNLLAVGNWRKYI 744

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
            V   M+E  +Q S  +Y  +++     G T
Sbjct: 745 EVLEWMEEARVQPSNGMYFDIISFAQKSGAT 775


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 152/302 (50%), Gaps = 11/302 (3%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
            E ++ +M+ R ++P+  TF+ +I+        NKA +  E M  +GC P+ ++Y+++ID
Sbjct: 207 VEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLID 266

Query: 244 AYGR-AGNVEMAFG---LYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMK 297
            Y +  GN +M      L +   N+   + PN   F+ LI  +    N  G + V++EM 
Sbjct: 267 GYCKLGGNGKMYKADAVLKEMVEND---VSPNLTTFNILIDGFWKDDNLPGSMKVFKEML 323

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
              VKPN+I+YN+L++ +    +  +  ++  +M   G+ PN  TY +L+  + +    +
Sbjct: 324 DQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLK 383

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           + L ++  +K +G   +  +YN L+     +G  D+ F + E+M+  E   PD  T++ +
Sbjct: 384 EALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEME-REGIVPDVGTYNCL 442

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I      G +  A+ +F+++   G  P+L     L++ Y +   +      L  + ++G+
Sbjct: 443 IAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGL 501

Query: 478 TP 479
            P
Sbjct: 502 KP 503



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 139/285 (48%), Gaps = 1/285 (0%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
            S  +  +N+ +  F K  +L  + ++F +MLD+ VKP+ +++++LI+        ++A+
Sbjct: 292 VSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAI 351

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
              ++M S G  P+ +TY+++I+ + +   ++ A  ++   + +        ++ LI  Y
Sbjct: 352 SMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAY 411

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G  D    + EEM+  G+ P++ TYN L+  + R       K ++ ++T  GL P+ 
Sbjct: 412 CKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDL 470

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            T+  L+  Y R         + +EM + G++     YN ++      G    A  +   
Sbjct: 471 VTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQ 530

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
           M+     + +  +++ ++   S +GK+ +A  + NEMLE G  PN
Sbjct: 531 MEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPN 575



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 150/360 (41%), Gaps = 82/360 (22%)

Query: 221 EWFERMPSFGCDPDALTYSSMIDAY---GRAGNVEMAFGLYDRARNEKWRIDPNAFS--T 275
           E F+R   +G    AL+   ++ A     R+ +VE  +    R +     I PN F+   
Sbjct: 174 EAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRK-----IQPNVFTFNV 228

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAKRPWQVKTIYKEMT 332
           +I      G  +   +V E+MK  G  PN+++YN L+D    +G   + ++   + KEM 
Sbjct: 229 VINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMV 288

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
           +N +SPN  T+  L+  + +      ++ V++EM +                        
Sbjct: 289 ENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLD------------------------ 324

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
                       ++ +P+  +++S+I      GK+SEA +M ++M+ AG +PNL    +L
Sbjct: 325 ------------QDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNAL 372

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSK 512
           I  + K     + +     +   G  P  R    L++   +     LGK+ +        
Sbjct: 373 INGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCK-----LGKIDD-------- 419

Query: 513 LGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLI-DLCVNLNLLENACKLLE 571
            G+ +K   EE + EG            I  DV     NCLI  LC N N +E A KL +
Sbjct: 420 -GFALK---EEMEREG------------IVPDV--GTYNCLIAGLCRNGN-IEAAKKLFD 460



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 109/263 (41%), Gaps = 37/263 (14%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI YN  +        + +A  + D M+  GV+P+ +T++ LI+    N++  +A++ F 
Sbjct: 331 VISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFG 390

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G  P    Y+ +IDAY + G ++  F L +    E    D   ++ LI      G
Sbjct: 391 SVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNG 450

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP------ 338
           N +    +++++ + G+ P+++T++ L++   R     +   + KEM+  GL P      
Sbjct: 451 NIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYN 509

Query: 339 ------------------------------NWNTYASLLRAYGRARYGEDTLSVYREMKE 368
                                         N  +Y  LL+ Y +    ED   +  EM E
Sbjct: 510 IVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLE 569

Query: 369 KGMQLSVTLYNTLLAMCADVGYT 391
           KG+  +   Y  +     D G+ 
Sbjct: 570 KGLVPNRITYEIVKEEMVDQGFV 592



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 20/165 (12%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           CR+  ++ A++LFD +  +G+ PD VTF  L+          KA    + M   G  P  
Sbjct: 447 CRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRH 505

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEK-WRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
           LTY+ ++  Y + GN++ A  +  +   E+  R++  +++ L++ Y   G  +    +  
Sbjct: 506 LTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLN 565

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
           EM   G+ PN ITY                + + +EM D G  P+
Sbjct: 566 EMLEKGLVPNRITY----------------EIVKEEMVDQGFVPD 594


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 164/354 (46%), Gaps = 5/354 (1%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV---KPDNVTFSTLISCARMNN 214
           +L    + + YN+ +K     +  ++A  L   M D  V    P+ V++ST+I+      
Sbjct: 158 ELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEG 217

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
             +K    F  M   G  PD +TY+++ID   +A   + A  ++ +  +   + + + ++
Sbjct: 218 QVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYN 277

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            LI  Y + G +   + + EEM A G KPN  TY +LL+ + +  R  + +  +  M   
Sbjct: 278 CLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGK 337

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G+ P+  TY  +L  Y       +   +   M   G+  +  ++N   +  A  G  D+A
Sbjct: 338 GIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKA 397

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            +IF  M+  +   PD+ ++ ++I      G+V +AE  FN+M+  G  P++ V +SL+ 
Sbjct: 398 MDIFNKMR-QQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVY 456

Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQTPKEELGKLVECVE 507
                 + + V      +  +GI P+  F   +L N+  +    E  +LV+ +E
Sbjct: 457 GLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIE 510



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 149/294 (50%), Gaps = 4/294 (1%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           +K E LF +ML+ G+ P+ V F+T++          +     + +   G  PD ++Y+++
Sbjct: 465 EKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTL 524

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           ID +  AG ++ A  L +   +   + D  +++TL+  Y  AG  D   + + +M + G+
Sbjct: 525 IDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGI 584

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            P ++TYN +L  + + KR  + K +Y  M ++G   +  TY  +L    ++   ++ + 
Sbjct: 585 TPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIK 644

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           +++ +  KG+QL++  +N ++      G  ++A ++F  + ++   Q +  T+  ++   
Sbjct: 645 MFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQ-NVVTYRLVVENL 703

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
              G + E +++F+ M + G  PN  +L +L++   +     D+ RA   L +L
Sbjct: 704 IEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVR---RLLHRGDISRAGAYLSKL 754



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 170/403 (42%), Gaps = 42/403 (10%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  Y + +  +     L +   L + M+  G+ P++  F+   S      + +KA++ F 
Sbjct: 343 VTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFN 402

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M   G  PDA++Y ++IDA  + G V+ A   +++  NE    D   FS+L+    T  
Sbjct: 403 KMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVD 462

Query: 285 NFDGCLNVYEEM-----------------------------------KAIGVKPNMITYN 309
            ++    ++ EM                                   + +GV+P++I+YN
Sbjct: 463 KWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYN 522

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            L+D    A    +   + + M   GL P+  +Y +LL  Y +A   +   S +R+M   
Sbjct: 523 TLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSN 582

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G+   V  YNT+L          EA E++ +M +S   + D +T++ ++        V E
Sbjct: 583 GITPGVVTYNTILHGLFQTKRFSEAKELYLNMINS-GTKWDIYTYNIILNGLCKSNCVDE 641

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLL 488
           A  MF  +   G + N+     +I    K  R +D +     +P  G+  +   +   + 
Sbjct: 642 AIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVE 701

Query: 489 NVMTQTPKEELGKLVECVEKSNSK-----LGYVVKLLLEEQDI 526
           N++ +   EE   L   +EK+ +      L  +V+ LL   DI
Sbjct: 702 NLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDI 744



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/355 (20%), Positives = 141/355 (39%), Gaps = 56/355 (15%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN-------LPNKAVEWFERMPS---FG 230
           L  A +LFD++L        V F+ L++    ++            V  F RM       
Sbjct: 30  LGDALKLFDELLPHARPASVVAFNHLLAAVSRSSGRRSTTSESETVVSLFNRMVRDCYIK 89

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
             P+  TYS +I  + R G++E  F  +       WR+D    + L+            +
Sbjct: 90  VAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAM 149

Query: 291 NV-YEEMKAIGVKPNMITYNNLLD------------------------------------ 313
           +V  + M  +G  P+ ++YN LL                                     
Sbjct: 150 DVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTV 209

Query: 314 -----TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
                T G+  +P+    ++ EM D G+ P+  TY +++    +A+  +   +V+++M +
Sbjct: 210 INGFFTEGQVDKPYN---LFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMID 266

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G++ ++  YN L+     +G   E   + E+M S+   +P+  T+ S++      G+  
Sbjct: 267 NGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEM-SAGGPKPNCCTYGSLLNYLCKNGRCR 325

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
           EA   F+ M+  G +P++     ++  Y       ++   LN +   GI+P+   
Sbjct: 326 EARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHI 380



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 158/371 (42%), Gaps = 18/371 (4%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           ++  YN+ +    K   +D+A ++F ++  +G++ + +TF+ +I           A++ F
Sbjct: 622 DIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLF 681

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYG 281
             +P+ G   + +TY  +++     G++E    L+     EK    PN+   + L++   
Sbjct: 682 AAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAM--EKNGTAPNSQMLNALVRRLL 739

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G+         ++          T + L+      +     K++ K+     +    N
Sbjct: 740 HRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYR---ILNEAN 796

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           + A + +A    R  +D  S++REM  KG+   V  YNT+L      G   EA E++  M
Sbjct: 797 SSALIKKA----RRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSM 852

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
            +S   Q + +T++ ++        V EA  MF  +   G + N+     +I    K  R
Sbjct: 853 INSRT-QMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGR 911

Query: 462 TDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPKEELGKLVECVEKSNSK-----LGY 515
            +D +     +P  G+ PD   +     N++ +   EE   L   +EKS +      L  
Sbjct: 912 KEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNA 971

Query: 516 VVKLLLEEQDI 526
           +V+ LL+  DI
Sbjct: 972 LVRRLLQRGDI 982



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 145/336 (43%), Gaps = 14/336 (4%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI YN  +        +D+A +L + M+  G+KPD+ +++TL+         + A   F
Sbjct: 517 DVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHF 576

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M S G  P  +TY++++    +      A  LY    N   + D   ++ ++     +
Sbjct: 577 RKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKS 636

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D  + +++ + + G++ N+IT+N ++  + +  R      ++  +  NGL  N  TY
Sbjct: 637 NCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTY 696

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++         E+  S++  M++ G   +  + N L+      G    A      +  
Sbjct: 697 RLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKL-D 755

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAM---FNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
             N   ++ T S +I+I S       A+++   +  + EA         ++LI+   KA+
Sbjct: 756 ERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANS-------SALIK---KAR 805

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           R DD       +   G+TPD      +L+ + QT +
Sbjct: 806 RIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGR 841



 Score = 46.2 bits (108), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 49/245 (20%), Positives = 102/245 (41%), Gaps = 27/245 (11%)

Query: 39  TSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTR 98
           + L +R+ S++ + +S       + +Y H    S PK Y  +N  +  A           
Sbjct: 752 SKLDERNFSVEASTTSMLISIFSSDEYQH-HAKSLPKKYRILNEANSSA----------- 799

Query: 99  YNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVI---ILNNMTNPDTAALALTYF 155
              L+K A  +D       D +S+ R +    L  D V    IL+ +      + A   +
Sbjct: 800 ---LIKKARRID-------DAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELY 849

Query: 156 TNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213
            + + +  +  +  YN+ +    K   +D+A ++F  +  +G++ + +TF+ +I      
Sbjct: 850 LSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKG 909

Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
                A++ F  +P+ G  PD +TY  + +     G++E   GL+         +D    
Sbjct: 910 GRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLL 969

Query: 274 STLIK 278
           + L++
Sbjct: 970 NALVR 974


>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 884

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 154/315 (48%), Gaps = 3/315 (0%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           LY+V++        LD+A +  +DML++G+ P  V F+++I+        + A + ++ M
Sbjct: 455 LYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIM 514

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
             FG  P + T SSM+    + G ++ A  L  +  ++   ++  AF+ L+  Y   G+ 
Sbjct: 515 LMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDT 574

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
            G  +++ EM+A G+ P+ I ++  +D + +A    +    + EM+  G  PN   Y SL
Sbjct: 575 AGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSL 634

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +          + L + REM++KG+   +   N ++      G    AF+ F +M     
Sbjct: 635 IHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHI-G 693

Query: 407 CQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             PD+ T++++I   C     VS A+   N+M  +G++P++      IQ +  +Q+    
Sbjct: 694 VTPDTVTYNTLIGGYCKVLDMVS-ADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRA 752

Query: 466 VRALNRLPELGITPD 480
           V  L+ L  +G+ P+
Sbjct: 753 VTMLDELIAVGVVPN 767



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 147/320 (45%), Gaps = 3/320 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  V +YN  M  + K RD+ +A  L+++M D+G+ PD  TF+ L++          + E
Sbjct: 380 SPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVAGNYKYGKEADSYE 439

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F         PD   Y   +     AG ++ A    +    +       AF+++I  Y 
Sbjct: 440 LFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYS 499

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AG  D     Y+ M   G+ P+  T +++L  + +  R  + + +  +M D GL  N  
Sbjct: 500 RAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKV 559

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            +  LL  Y +        S++ EM+ +G+      ++  +   +  G  +EA+E F +M
Sbjct: 560 AFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEM 619

Query: 402 KSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
            S +   P+++ ++S+I  +C+C GK+ EA  +  EM + G  P++F    +I  + K  
Sbjct: 620 -SKKGFVPNNFVYNSLIHGLCNC-GKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEG 677

Query: 461 RTDDVVRALNRLPELGITPD 480
           R      A   +  +G+TPD
Sbjct: 678 RMKSAFDAFAEMHHIGVTPD 697



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 145/349 (41%), Gaps = 40/349 (11%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           ++  ++  +  D     +L   M+  G +P N  F+ +I C         A      MP 
Sbjct: 247 SILFRLLLRVGDYGSVWKLLRGMIRDGPRPCNHNFNIMILCFCQKGYLRVAESLLFVMPK 306

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
           F C+PD   Y+ +I+AY   G    A G          +     FST+I  +   GN   
Sbjct: 307 FCCEPDVYAYNILINAYRIRGRTSDALGFLHLMIKNGCKPSLITFSTIITAFCNEGNVVE 366

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
              ++E ++ +G+ PN+  YN L+    +A+   Q   +Y+EM D G++P+  T+  L+ 
Sbjct: 367 ARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVA 426

Query: 349 AYGRARYGE--DTLSVYR-----------------------------------EMKEKGM 371
             G  +YG+  D+  ++R                                   +M EKGM
Sbjct: 427 --GNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGM 484

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
             SV  +N+++A  +  G+ D A + ++ M       P S T SSM+   S +G++ EA 
Sbjct: 485 PPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMF-GLVPSSSTCSSMLLGLSKKGRLQEAR 543

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +  +M++ G   N    T L+  Y K   T         +   GI PD
Sbjct: 544 DLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPD 592



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 5/226 (2%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + + V +  + K  D   A  L+ +M  RG+ PD + FS  I       L  +A E F  
Sbjct: 559 VAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSE 618

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG--TA 283
           M   G  P+   Y+S+I      G +  A  L    R +   + P+ F+T I + G    
Sbjct: 619 MSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKG--LLPDIFTTNIIINGFCKE 676

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G      + + EM  IGV P+ +TYN L+    +            +M  +G  P+  TY
Sbjct: 677 GRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTY 736

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADV 388
              ++ +  ++     +++  E+   G+  +   YNT++ A+C D+
Sbjct: 737 NIRIQGFCSSQKISRAVTMLDELIAVGVVPNTVTYNTMMNAVCTDM 782



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 96/235 (40%), Gaps = 11/235 (4%)

Query: 261 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
           A + K+  D +  +TL++ +  +      L +   M+ +GV+P+    + L   + R   
Sbjct: 199 ANHHKYESDFSILNTLMRGFMNSEMAYESLEILSRMREVGVRPSSSAISILFRLLLRVGD 258

Query: 321 PWQVKTIYKEMTDNGLSP---NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
              V  + + M  +G  P   N+N         G  R  E  L V   M +   +  V  
Sbjct: 259 YGSVWKLLRGMIRDGPRPCNHNFNIMILCFCQKGYLRVAESLLFV---MPKFCCEPDVYA 315

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437
           YN L+      G T +A   F  +     C+P   TFS++IT     G V EA  +F  +
Sbjct: 316 YNILINAYRIRGRTSDALG-FLHLMIKNGCKPSLITFSTIITAFCNEGNVVEARKIFEGI 374

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            E G  PN+ +  +L+  Y KA+           + + GI PD    G   N++ 
Sbjct: 375 QEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPD----GATFNILV 425



 Score = 46.2 bits (108), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 39/154 (25%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVE 221
           ++   N+ +  F K   +  A   F +M   GV PD VT++TLI   C  ++ +   A E
Sbjct: 662 DIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMV--SADE 719

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
           +  +M + G DPD  TY+  I  +  +  +  A  + D                      
Sbjct: 720 FLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLD---------------------- 757

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
                        E+ A+GV PN +TYN +++ +
Sbjct: 758 -------------ELIAVGVVPNTVTYNTMMNAV 778



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 63/118 (53%), Gaps = 5/118 (4%)

Query: 155 FTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211
           F NK+ AS    ++  YN+ ++ F   + + +A  + D+++  GV P+ VT++T+++ A 
Sbjct: 720 FLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIAVGVVPNTVTYNTMMN-AV 778

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
             ++ ++A+    ++      P+ +T + ++  + + G  E A  ++ +  N+  R D
Sbjct: 779 CTDMLDRAMVLTAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKAL-IWGQKLNKLLRAD 835


>gi|302809414|ref|XP_002986400.1| hypothetical protein SELMODRAFT_123901 [Selaginella moellendorffii]
 gi|300145936|gb|EFJ12609.1| hypothetical protein SELMODRAFT_123901 [Selaginella moellendorffii]
          Length = 318

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 132/251 (52%), Gaps = 1/251 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ +K   K  +L K+ ++F       + PD  T+  ++S     N    A  +FE M 
Sbjct: 12  YNIMIKNLVKDSELTKSLKVFHMFETDQLSPDVGTYHYIVSGLCKANKTKMAAMYFEGMK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD +TYS+MID YGRAG V  A  L++  + +  R+D   F++L++  GT+    
Sbjct: 72  KLGLLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKNVRLDTRVFNSLLRAVGTSYKPS 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              N++ EM+  G  P++ +YN L   + R  R  +++ +Y+EM  +GL P+  TY +++
Sbjct: 132 LVYNIFREMQYFGHVPDIWSYNLLFYGLARRGRRKRLRKVYREMKRDGLKPDIYTYTAII 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
              G A   +   +  + +  KG++++V  +N LL         + AF ++ DMK +   
Sbjct: 192 LCLGNAGRTKSAYNFMQGLLRKGVEVNVKTWNALLRGLTKEDVIEVAFSVYNDMK-ARGF 250

Query: 408 QPDSWTFSSMI 418
           +PD+ T+S ++
Sbjct: 251 KPDNTTYSLLL 261



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 110/231 (47%), Gaps = 2/231 (0%)

Query: 264 EKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
            ++RI + ++++ +IK           L V+   +   + P++ TY+ ++  + +A +  
Sbjct: 2   RRYRISNVSSYNIMIKNLVKDSELTKSLKVFHMFETDQLSPDVGTYHYIVSGLCKANKTK 61

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
                ++ M   GL P+  TY++++  YGRA      L ++ EMK K ++L   ++N+LL
Sbjct: 62  MAAMYFEGMKKLGLLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKNVRLDTRVFNSLL 121

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
                       + IF +M+   +  PD W+++ +    + RG+      ++ EM   G 
Sbjct: 122 RAVGTSYKPSLVYNIFREMQYFGHV-PDIWSYNLLFYGLARRGRRKRLRKVYREMKRDGL 180

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           +P+++  T++I C G A RT      +  L   G+  + +    LL  +T+
Sbjct: 181 KPDIYTYTAIILCLGNAGRTKSAYNFMQGLLRKGVEVNVKTWNALLRGLTK 231



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 103/237 (43%), Gaps = 2/237 (0%)

Query: 138 ILNNMTNPDTAALALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           I++ +   +   +A  YF    KL    + + Y+  +  + +   +++A +LF++M  + 
Sbjct: 50  IVSGLCKANKTKMAAMYFEGMKKLGLLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKN 109

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V+ D   F++L+     +  P+     F  M  FG  PD  +Y+ +     R G  +   
Sbjct: 110 VRLDTRVFNSLLRAVGTSYKPSLVYNIFREMQYFGHVPDIWSYNLLFYGLARRGRRKRLR 169

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            +Y   + +  + D   ++ +I   G AG      N  + +   GV+ N+ T+N LL  +
Sbjct: 170 KVYREMKRDGLKPDIYTYTAIILCLGNAGRTKSAYNFMQGLLRKGVEVNVKTWNALLRGL 229

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
            +        ++Y +M   G  P+  TY+ LL      R  +    + R+ ++  ++
Sbjct: 230 TKEDVIEVAFSVYNDMKARGFKPDNTTYSLLLENSIALRDAKKVYRIQRDFRDSRLE 286


>gi|302813971|ref|XP_002988670.1| hypothetical protein SELMODRAFT_128601 [Selaginella moellendorffii]
 gi|300143491|gb|EFJ10181.1| hypothetical protein SELMODRAFT_128601 [Selaginella moellendorffii]
          Length = 318

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 132/251 (52%), Gaps = 1/251 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ +K   K  +L K+ ++F       + PD  T+  ++S     N    A  +FE M 
Sbjct: 12  YNIMIKNLVKDSELTKSLKVFHMFEADQLSPDVGTYHYIVSGLCKANKTKMAAMYFEGMK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD +TYS+MID YGRAG V  A  L++  + +  R+D   F++L++  GT+    
Sbjct: 72  KLGLLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKNVRLDTRVFNSLLRAVGTSYKPS 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              N++ EM+  G  P++ +YN L   + R  R  +++ +Y+EM  +GL P+  TY +++
Sbjct: 132 LVYNIFREMQYFGQVPDIWSYNLLFYGLARRGRRKRLRKVYREMKRDGLKPDIYTYTAII 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
              G A   +   +  + +  KG++++V  +N LL         + AF ++ DMK +   
Sbjct: 192 LCLGNAGRTKSAYNFMQGLLRKGVEVNVKTWNALLRGLTKEDVIEVAFSVYNDMK-ARGF 250

Query: 408 QPDSWTFSSMI 418
           +PD+ T+S ++
Sbjct: 251 KPDNTTYSLLL 261



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 110/231 (47%), Gaps = 2/231 (0%)

Query: 264 EKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
            ++RI + ++++ +IK           L V+   +A  + P++ TY+ ++  + +A +  
Sbjct: 2   RRYRISNVSSYNIMIKNLVKDSELTKSLKVFHMFEADQLSPDVGTYHYIVSGLCKANKTK 61

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
                ++ M   GL P+  TY++++  YGRA      L ++ EMK K ++L   ++N+LL
Sbjct: 62  MAAMYFEGMKKLGLLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKNVRLDTRVFNSLL 121

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
                       + IF +M+      PD W+++ +    + RG+      ++ EM   G 
Sbjct: 122 RAVGTSYKPSLVYNIFREMQYFGQV-PDIWSYNLLFYGLARRGRRKRLRKVYREMKRDGL 180

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
           +P+++  T++I C G A RT      +  L   G+  + +    LL  +T+
Sbjct: 181 KPDIYTYTAIILCLGNAGRTKSAYNFMQGLLRKGVEVNVKTWNALLRGLTK 231



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 103/237 (43%), Gaps = 2/237 (0%)

Query: 138 ILNNMTNPDTAALALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           I++ +   +   +A  YF    KL    + + Y+  +  + +   +++A +LF++M  + 
Sbjct: 50  IVSGLCKANKTKMAAMYFEGMKKLGLLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKN 109

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V+ D   F++L+     +  P+     F  M  FG  PD  +Y+ +     R G  +   
Sbjct: 110 VRLDTRVFNSLLRAVGTSYKPSLVYNIFREMQYFGQVPDIWSYNLLFYGLARRGRRKRLR 169

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            +Y   + +  + D   ++ +I   G AG      N  + +   GV+ N+ T+N LL  +
Sbjct: 170 KVYREMKRDGLKPDIYTYTAIILCLGNAGRTKSAYNFMQGLLRKGVEVNVKTWNALLRGL 229

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
            +        ++Y +M   G  P+  TY+ LL      R  +    + R+ K+  ++
Sbjct: 230 TKEDVIEVAFSVYNDMKARGFKPDNTTYSLLLENSIALRDAKKVYRIQRDFKDSRLE 286


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 151/313 (48%), Gaps = 1/313 (0%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           D+++A  LF++   +G+KPD V +++L+    +  L   A++    M   GC PD  TY+
Sbjct: 343 DVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYN 402

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +I+   + GN+  A  + + A  + +  D   F+TLI  Y      D  L + E M   
Sbjct: 403 IVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEY 462

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G+ P+ ITYN++L+ + +A +  +V   ++EM   G  PN  TY  L+  + R+   E+ 
Sbjct: 463 GIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEA 522

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
             V  +M ++G+      +NTL+      G  + A+ +F+ ++  +     + TF+++I 
Sbjct: 523 SKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLE-EKGYSATADTFNTLIG 581

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             S +  +  AE +F+EML  G   + +    LI    K    D     L  + + G  P
Sbjct: 582 AFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIP 641

Query: 480 DDRFCGCLLNVMT 492
                G ++N +T
Sbjct: 642 SMSTFGRVINSLT 654



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 136/303 (44%), Gaps = 3/303 (0%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           A  +V+ YN  ++   K     +A      M+++G  PD+ T++T+I      ++  +A 
Sbjct: 254 AVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEAT 313

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E  +     G  PD +TY S+I+     G+VE A  L++ A+ +  + D   +++L+K  
Sbjct: 314 ELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGL 373

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              G     L V  EM   G  P++ TYN +++ + +         +  +    G  P+ 
Sbjct: 374 CLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDV 433

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            T+ +L+  Y +    +  L +   M E G+      YN++L      G  +E  E F++
Sbjct: 434 FTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQE 493

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M   + C P+  T++ +I       K+ EA  +  +M + G  P+     +LI  YG  +
Sbjct: 494 M-ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLI--YGFCR 550

Query: 461 RTD 463
             D
Sbjct: 551 NGD 553



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/395 (20%), Positives = 155/395 (39%), Gaps = 68/395 (17%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD---------------------------- 199
           YN  M         D+A +++  ML  GV PD                            
Sbjct: 91  YNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALP 150

Query: 200 ---NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256
               V + T++     +   + A + F++M      P+   ++ ++ A  + G+V  A  
Sbjct: 151 HRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGL 210

Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           L  +       I+   ++  I+    AG     + + + M+A  V P+++TYN L+  + 
Sbjct: 211 LLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLC 269

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-------------------------- 350
           +   P +     + M + G  P+  TY +++  Y                          
Sbjct: 270 KKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQV 329

Query: 351 -------GRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
                  G    G  E  L ++ E + KG++  + +YN+L+      G    A ++  +M
Sbjct: 330 TYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEM 389

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
            + E C PD  T++ +I      G +S+A  + N+ +  G+ P++F   +LI  Y K  +
Sbjct: 390 -AEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLK 448

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
            D  ++ + R+ E GI PD      +LN + +  K
Sbjct: 449 LDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGK 483



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 7/221 (3%)

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
           R+R     I P  +   I+ Y  AG     ++ +E M      P    YN ++D +  A 
Sbjct: 44  RSRLSPATIHP-LYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAA 102

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379
              Q   +Y  M   G+SP+ +T+   LR++         L + R +  +G     T+  
Sbjct: 103 YHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVC 162

Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
            L A     G+T +A ++F+ M  + +  P+   F+ ++     RG V EA  +  ++++
Sbjct: 163 GLYAH----GHTHDARQLFDQMLHT-HVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQ 217

Query: 440 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            G   NLF     I+   +A R  + VR ++ +    + PD
Sbjct: 218 RGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PD 257



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 69/336 (20%), Positives = 124/336 (36%), Gaps = 66/336 (19%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR------------------ 260
           AV+ FERM  F C P A  Y++++DA   A   + A  +Y R                  
Sbjct: 72  AVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLR 131

Query: 261 -----ARNEK----WRIDPN----AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
                AR        R  P+    A+ T++      G+      ++++M    V PN+  
Sbjct: 132 SFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAA 191

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLS------------------------------ 337
           +N +L  + +     +   +  ++   G+S                              
Sbjct: 192 FNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMR 251

Query: 338 ----PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393
               P+  TY +L+R   +    ++ +   R M  +G       YNT++     +    E
Sbjct: 252 AYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQE 311

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A E+ +D    +   PD  T+ S+I      G V  A  +FNE    G +P++ V  SL+
Sbjct: 312 ATELLKD-AVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLV 370

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           +           ++ +N + E G  PD +    ++N
Sbjct: 371 KGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVIN 406



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 79/173 (45%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I YN+ ++ F +   +++A ++   M   G+ PD V+F+TLI     N     A   F++
Sbjct: 504 ITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQK 563

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           +   G    A T++++I A+    N+ MA  ++D   ++  R D   +  LI       N
Sbjct: 564 LEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTAN 623

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            D       EM   G  P+M T+  +++++    R +Q   I   M   G+ P
Sbjct: 624 VDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 676


>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 178/386 (46%), Gaps = 27/386 (6%)

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           +W E+   F  + +  +Y+++ID+ G+     M + L +  +  K  +    F+ + + Y
Sbjct: 135 KWAEKQKGFMYNTE--SYNALIDSLGKIKQFNMIWNLVNDMK-RKGVLTKETFALISRRY 191

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
             +G     +N +E+M+  G+K     +N LLDT+ ++++    + ++ +M      P+ 
Sbjct: 192 ARSGKVKEAMNTFEKMEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDI 251

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            +Y  LL  +G+ +       VYREMK++G +  V  Y  L+     V   D+A E+F +
Sbjct: 252 KSYTILLEGWGQEKNLLKLDEVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFRE 311

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M+ S+NCQP    F ++I       ++SEA   F     +GF P      +++  Y  + 
Sbjct: 312 ME-SKNCQPSPHIFCTLINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSM 370

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--------EELGKLVECVEKSNSK 512
           R DD  R ++ + + G+ P+ R    +L+ + +  K        E++    EC E + S 
Sbjct: 371 RIDDAYRMVDEMRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEEC-EPTVST 429

Query: 513 LGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKA--YCNCLIDLCVNLNLLENACKL 569
              +V++      +E      A ++++ + +K V       + LI+   + N L+ ACK 
Sbjct: 430 YDIIVRMFCNMDKVES-----AIKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIACKY 484

Query: 570 LELGLTLEVYTDIQSRSPTQWSLHLK 595
            +  L      D+  R P     HLK
Sbjct: 485 FQEML------DVGIRPPAALFSHLK 504



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 138/313 (44%), Gaps = 2/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N  +    K R +  A+ +FD M  R   PD  +++ L+          K  E +  M 
Sbjct: 219 FNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQEKNLLKLDEVYREMK 278

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G +PD +TY  +I+AY +    + A  L+    ++  +  P+ F TLI   G+     
Sbjct: 279 DEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESKNCQPSPHIFCTLINGLGSVRRLS 338

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L  +   KA G  P   TYN ++     + R      +  EM  +G+ PN  TY  +L
Sbjct: 339 EALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSGVGPNSRTYDIIL 398

Query: 348 RAYGRARYGEDTLSVYREMK-EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
               +A    +  SV+ +M  E+  + +V+ Y+ ++ M  ++   + A ++++ MK+ + 
Sbjct: 399 HHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDKVESAIKVWDRMKA-KG 457

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
             P    FS +I       K+  A   F EML+ G  P   + + L Q   +  R D VV
Sbjct: 458 VHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRPPAALFSHLKQALIEDGRKDTVV 517

Query: 467 RALNRLPELGITP 479
               ++ +L  TP
Sbjct: 518 LLAQKIDKLRKTP 530



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 132/292 (45%)

Query: 188 FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
           F+ M   G+K ++  F+ L+     +     A   F++M      PD  +Y+ +++ +G+
Sbjct: 204 FEKMEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQ 263

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
             N+     +Y   ++E +  D   +  LI  Y     +D  + ++ EM++   +P+   
Sbjct: 264 EKNLLKLDEVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESKNCQPSPHI 323

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           +  L++ +G  +R  +    ++    +G +P   TY +++ AY  +   +D   +  EM+
Sbjct: 324 FCTLINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMR 383

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
           + G+  +   Y+ +L        T EAF +FE M S E C+P   T+  ++ +     KV
Sbjct: 384 KSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDKV 443

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
             A  +++ M   G  P + + + LI       + D   +    + ++GI P
Sbjct: 444 ESAIKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRP 495


>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Vitis vinifera]
          Length = 635

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/419 (21%), Positives = 188/419 (44%), Gaps = 42/419 (10%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ Y   +      +  D    +   + + G++PD++ F+ +I+    +    +A+++F 
Sbjct: 107 LVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFW 166

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD-RARNEKWRIDPNAFSTLIKLYGTA 283
           +M   G  P   T++++I  YG AG  E +  L +  +++E  R +   ++ L++ +   
Sbjct: 167 KMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNK 226

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            N     NV  +M A G++P+ +TYN +     +     Q + I  EM ++ + PN  T 
Sbjct: 227 KNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTC 286

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD---------------- 387
             ++  Y +    ++ L     MK+ G+Q ++ ++N+L+    D                
Sbjct: 287 CIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEE 346

Query: 388 -------------------VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
                               G+ D+  EIF+DM  +   QPD+  +S +       G+  
Sbjct: 347 FGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKA-RIQPDAHVYSILAKGYVRAGEPE 405

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           +AE + N M+++GF PN+ + T++I  +  A R +  ++   ++ E GI P+ +    L+
Sbjct: 406 KAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLI 465

Query: 489 ---NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 544
                  Q  K E  ++++ +E+ N +      LL+ E       KKEA  + +++  +
Sbjct: 466 WGYGEARQPWKSE--EVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVKNE 522



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 172/373 (46%), Gaps = 13/373 (3%)

Query: 117 DDVFSVLRCLGDDFLEQDCVI---ILNNMTNPDTAALALTYFTNKLKASKE---VILYNV 170
           D + S++  + ++ +E D +    ++N  +       A+ YF  K+K S        +N 
Sbjct: 124 DSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFW-KMKESGSKPTTSTFNT 182

Query: 171 TMKVFRKCRDLDKAERLFDDM-LDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMP 227
            +K +    + +++++L + M  D  V+P+  T++ L+   C + N +  KA     +M 
Sbjct: 183 LIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIM--KAWNVVYKMV 240

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  PDA+TY+++  AY + G    A G+    +N   + +      +I  Y   G   
Sbjct: 241 ASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIK 300

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L     MK +G++PN++ +N+L+     A     V  +   M + G+ P+  T+++++
Sbjct: 301 EALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIM 360

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A+  A + +    ++ +M +  +Q    +Y+ L       G  ++A EI   M  S   
Sbjct: 361 NAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKS-GF 419

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+   F+++I      G++  A  +F +M E G  PNL    +LI  YG+A++      
Sbjct: 420 HPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEE 479

Query: 468 ALNRLPELGITPD 480
            L  + E  + P+
Sbjct: 480 VLQIMEEFNVQPE 492



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 128/304 (42%), Gaps = 21/304 (6%)

Query: 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
           CR +    +L + M+++G                    P +     + +   G  P  +T
Sbjct: 69  CRTVRSRTKLMNIMIEKG-------------------RPQEVQSILDSIIEGGHKPSLVT 109

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           Y++++ A     + +    +  +        D   F+ +I  +  +GN    +  + +MK
Sbjct: 110 YTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMK 169

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT-DNGLSPNWNTYASLLRAYGRARYG 356
             G KP   T+N L+   G A  P + + + + M+ D  + PN  TY  L+RA+   +  
Sbjct: 170 ESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNI 229

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
               +V  +M   G+Q     YNT+    A  G   +A  I  +M++S N QP+  T   
Sbjct: 230 MKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNS-NVQPNERTCCI 288

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I      GK+ EA      M + G +PNL V  SLI+ +  A   D V   L  + E G
Sbjct: 289 IIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFG 348

Query: 477 ITPD 480
           + PD
Sbjct: 349 VKPD 352



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 106/238 (44%), Gaps = 5/238 (2%)

Query: 132 EQDCVIILNNMTNPDT--AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFD 189
           E+ C II+           AL   Y    L     ++++N  +K F    D D    +  
Sbjct: 283 ERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLT 342

Query: 190 DMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
            M + GVKPD +TFST+++        +K  E F+ M      PDA  YS +   Y RAG
Sbjct: 343 LMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAG 402

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
             E A  + +      +  +   F+T+I  + +AG  +  + ++E+M   G+ PN+ T+ 
Sbjct: 403 EPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFE 462

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT---YASLLRAYGRARYGEDTLSVYR 364
            L+   G A++PW+ + + + M +  + P   T    A   RA G  +     LS  +
Sbjct: 463 TLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVK 520



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 110/231 (47%), Gaps = 4/231 (1%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV-EWFERMPSFGCDPD 234
           C++  + +A +    M D G++P+ V F++LI    ++ +    V E    M  FG  PD
Sbjct: 294 CKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIK-GFIDAVDRDGVNEVLTLMEEFGVKPD 352

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
            +T+S++++A+  AG ++    ++D     + + D + +S L K Y  AG  +    +  
Sbjct: 353 VITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILN 412

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
            M   G  PN++ +  +++    A R      I+++M + G++PN  T+ +L+  YG AR
Sbjct: 413 AMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEAR 472

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
               +  V + M+E  +Q   T    +       G   EA  I   +K+ E
Sbjct: 473 QPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVKNEE 523



 Score = 40.0 bits (92), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 16/80 (20%), Positives = 43/80 (53%)

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + ++ I   +G+  E +++ + ++E G +P+L   T+L+      +  D +   ++++ E
Sbjct: 76  TKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEE 135

Query: 475 LGITPDDRFCGCLLNVMTQT 494
            G+ PD  F   ++N  +++
Sbjct: 136 NGMEPDSIFFNAVINAFSES 155


>gi|115455503|ref|NP_001051352.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|14488357|gb|AAK63924.1|AC084282_5 unknown protein [Oryza sativa Japonica Group]
 gi|108711214|gb|ABF99009.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549823|dbj|BAF13266.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|125545804|gb|EAY91943.1| hypothetical protein OsI_13630 [Oryza sativa Indica Group]
 gi|125588003|gb|EAZ28667.1| hypothetical protein OsJ_12678 [Oryza sativa Japonica Group]
          Length = 484

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 163/364 (44%), Gaps = 10/364 (2%)

Query: 173 KVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCD 232
           K+   CR     E   D    R V PD V    L        L  +  EW  R    GC 
Sbjct: 41  KLIISCRKASAVEHELDHSGVR-VTPD-VAERVLERLDNAGMLAYRFFEWARRQKRGGCA 98

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
               +Y +++ +  +    ++ + +    R E   ++   F  +++ Y  A   D  +  
Sbjct: 99  HTVRSYHTVVASLAKIRQYQLMWDVVAVMRREG-AVNVETFGIIMRKYARAQKVDEAVYT 157

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           +  M+  GV PN+  +N+LL  + ++K   + + I+ +M ++  SP+  TY+ LL  +GR
Sbjct: 158 FNVMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKM-NSRFSPDAKTYSILLEGWGR 216

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
           A        VY EM + G +  +  Y  ++      G  +EA  + +DM +S  CQP ++
Sbjct: 217 APNLPKMREVYSEMLDAGCEPDIVTYGIMVDSLCKTGRVEEAVRVVQDM-TSRGCQPTTY 275

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
            +S ++       ++ +A A F +M + G  P++ V  +L+  + KA++ ++  R LN +
Sbjct: 276 IYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDIVVYNALVSAFCKAKKFENAFRVLNDM 335

Query: 473 PELGITPDDRFCGCLLNVMTQTPKEE-----LGKLVECVEKSNSKLGYVVKLLLEEQDIE 527
              GIT + R    +LN +    +++       ++++C +        ++K+  E   +E
Sbjct: 336 EGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMIKCCQPDCDTYTMMIKMFCENDKVE 395

Query: 528 GDFK 531
              K
Sbjct: 396 MALK 399



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 156/343 (45%), Gaps = 5/343 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           + + M+ + + + +D+A   F+ M   GV P+   F++L+     +    KA E F++M 
Sbjct: 138 FGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKMN 197

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           S    PDA TYS +++ +GRA N+     +Y    +     D   +  ++      G  +
Sbjct: 198 S-RFSPDAKTYSILLEGWGRAPNLPKMREVYSEMLDAGCEPDIVTYGIMVDSLCKTGRVE 256

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + V ++M + G +P    Y+ L+ T G   R       + +M  +G+ P+   Y +L+
Sbjct: 257 EAVRVVQDMTSRGCQPTTYIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDIVVYNALV 316

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A+ +A+  E+   V  +M+  G+  +   +N +L     +G  DEA+++F  M     C
Sbjct: 317 SAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMIKC--C 374

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           QPD  T++ MI +     KV  A  ++  M    F P++   + LI      +       
Sbjct: 375 QPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKREVSQACV 434

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 510
            L  + E GI P     G L  ++ +  ++++   +  VEK N
Sbjct: 435 LLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLDFL--VEKMN 475


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 151/318 (47%), Gaps = 1/318 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V+ YN  +  F K  D++KA  LF +M+ RG+ PD VT+S+++         +KA  
Sbjct: 216 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEA 275

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
           +  +M + G  P+  TY+++I  Y   G  + A  ++   R +    D   F+ L+    
Sbjct: 276 FLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLC 335

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G      +V++ M   G  P++ +YN +L+          +  ++  M  +G++P   
Sbjct: 336 KYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVIC 395

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           T+  L++AY      +  + ++ EM++ G++ +V  Y T++A    +G  D+A E F  M
Sbjct: 396 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQM 455

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
              +   PD + +  +I      G + +A+ + +E++  G   ++ + +S+I    K  R
Sbjct: 456 -IDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGR 514

Query: 462 TDDVVRALNRLPELGITP 479
             D     +    +G+ P
Sbjct: 515 VMDAQNIFDLTVNVGLHP 532



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 172/394 (43%), Gaps = 45/394 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +NV +K +  C  LDKA  +F++M D GVKP+ +T++T+I+        + A+E F +M 
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMI 456

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD   Y  +I  +   G++  A  L     N    +D   FS++I      G   
Sbjct: 457 DQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVM 516

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              N+++    +G+ P  + Y+ L+D      +  +   ++  M   G+ PN   Y +L+
Sbjct: 517 DAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLV 576

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT---------------- 391
             Y +    ++ LS++REM +KG++ S  LYN ++    + G T                
Sbjct: 577 NGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIA 636

Query: 392 -------------------DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
                              DEA  +F+++++  N + D  T ++MI       +V EA+ 
Sbjct: 637 MNKCTYSIVLRGLFKNRCFDEAIFLFKELRAM-NVKIDIITLNTMIAGMFQTRRVEEAKD 695

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           +F  +  +G  P +   + +I    K    ++     + +   G  PD R    LLN + 
Sbjct: 696 LFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSR----LLNHVV 751

Query: 493 Q--TPKEEL---GKLVECVEKSNSKLGYVVKLLL 521
           +    K E+   G  +  +++ N  L ++  +LL
Sbjct: 752 RELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLL 785



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 152/326 (46%), Gaps = 1/326 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + Y+  +    K R +DKAE     M+++GV P+N T++ LI          +AV  F
Sbjct: 253 DFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVF 312

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M      PD +T++ ++ +  + G ++ A  ++D    +    D  +++ ++  Y T 
Sbjct: 313 KEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 372

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G      ++++ M   G+ P + T+N L+          +   I+ EM D+G+ PN  TY
Sbjct: 373 GCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTY 432

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +++ A  R    +D +  + +M ++G+      Y+ L+      G   +A E+  ++ +
Sbjct: 433 TTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMN 492

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +     D   FSS+I      G+V +A+ +F+  +  G  P   V + L+  Y    + +
Sbjct: 493 N-GMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKME 551

Query: 464 DVVRALNRLPELGITPDDRFCGCLLN 489
             +R  + +   GI P+D   G L+N
Sbjct: 552 KALRVFDAMVSAGIEPNDVVYGTLVN 577



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 161/364 (44%), Gaps = 18/364 (4%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I+++  T      LAL +F   L+     ++I+ N  +K F + +  D+A    D +L R
Sbjct: 116 ILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEA---LDILLHR 172

Query: 195 ----GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG--CDPDALTYSSMIDAYGRA 248
               G  PD  ++S L+          +A +    M   G  C PD + Y+++ID + + 
Sbjct: 173 TPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKE 232

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           G+V  A  L+          D   +S+++     A   D       +M   GV PN  TY
Sbjct: 233 GDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTY 292

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA---YGRARYGEDTLSVYRE 365
           NNL+       +  +   ++KEM    + P+  T+  L+ +   YG+ +   D   V+  
Sbjct: 293 NNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARD---VFDT 349

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
           M  KG    V  YN +L   A  G   +  ++F D+   +   P   TF+ +I   +  G
Sbjct: 350 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLF-DLMLGDGIAPVICTFNVLIKAYANCG 408

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 485
            + +A  +FNEM + G +PN+   T++I    +  + DD +   N++ + G+ PD     
Sbjct: 409 MLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYH 468

Query: 486 CLLN 489
           CL+ 
Sbjct: 469 CLIQ 472



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 169/379 (44%), Gaps = 2/379 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  YN+ +  +     L     LFD ML  G+ P   TF+ LI       + +KA+  F
Sbjct: 358 DVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIF 417

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  P+ LTY+++I A  R G ++ A   +++  ++    D  A+  LI+ + T 
Sbjct: 418 NEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTH 477

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+      +  E+   G+  +++ ++++++ + +  R    + I+    + GL P    Y
Sbjct: 478 GSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVY 537

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+  Y      E  L V+  M   G++ +  +Y TL+     +G  DE   +F +M  
Sbjct: 538 SMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREM-L 596

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +  +P +  ++ +I      G+   A+  F+EM E+G   N    + +++   K +  D
Sbjct: 597 QKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFD 656

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLE 522
           + +     L  + +  D      ++  M QT + EE   L   + +S      V   ++ 
Sbjct: 657 EAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMI 716

Query: 523 EQDIEGDFKKEATELFNSI 541
              I+    +EA ++F+S+
Sbjct: 717 TNLIKEGLVEEAEDMFSSM 735



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 145/358 (40%), Gaps = 50/358 (13%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL---- 236
           LD+ +R    +L+R +       +   S A   + P  AV  F R  S    P  L    
Sbjct: 52  LDELQRRGTPVLERDLNGFLAAIARAPSSAACRSGPALAVALFNRAASRAQGPRVLSPTS 111

Query: 237 -TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID-------------------------- 269
            TY+ ++D   RA   E+A   + +      R+D                          
Sbjct: 112 HTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLH 171

Query: 270 --------PNAFSTLIKL-----YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
                   P+ FS  I L      G +G  D  L +  E  A+   P+++ YN ++D   
Sbjct: 172 RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPDVVAYNTVIDGFF 230

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +     +   ++KEM   G+ P++ TY+S++ A  +AR  +   +  R+M  KG+  +  
Sbjct: 231 KEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNW 290

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            YN L+   +  G   EA  +F++M+  ++  PD  TF+ ++      GK+ EA  +F+ 
Sbjct: 291 TYNNLIYGYSSTGQWKEAVRVFKEMR-RQSILPDVVTFNMLMGSLCKYGKIKEARDVFDT 349

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           M   G  P++F    ++  Y       D+    + +   GI P      C  NV+ + 
Sbjct: 350 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP----VICTFNVLIKA 403


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 151/336 (44%), Gaps = 39/336 (11%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           ++KAE +     + G+  D V ++T ++   R+ ++ NKA+   ERM SFG  P+++T++
Sbjct: 367 VEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDM-NKAILTIERMESFGLRPNSITFN 425

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           S+ID +     ++ A     +   +        ++TLI  YG    FD C  + E+M+ I
Sbjct: 426 SLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEI 485

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           GVKPN+++Y +L++ + +  +  + + + ++M   G+ PN   Y  L+         +D 
Sbjct: 486 GVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDA 545

Query: 360 LSVYREMKEK-----------------------------------GMQLSVTLYNTLLAM 384
           L  + EM                                      G    V  YN+L++ 
Sbjct: 546 LRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISG 605

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
            A+ G   +   ++E MK+    +P   T+  +I+ CS  G +   E ++NEML+    P
Sbjct: 606 YANAGNVSKCLGLYETMKNL-GIKPTVRTYHPLISGCSKEG-IELVEKLYNEMLQMNLLP 663

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  V  ++I CY +   T         + + GI PD
Sbjct: 664 DRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPD 699



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 150/353 (42%), Gaps = 36/353 (10%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I +N  +    K R + +A  L  +M   G  PD  T+S L       +  N A+E +E
Sbjct: 281 IITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYE 340

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +    G   +  T S +++   + G VE A  +  +        D   ++T +  Y   G
Sbjct: 341 QATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIG 400

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           + +  +   E M++ G++PN IT+N+L+D     K   + +   K+M + G++P+  TY 
Sbjct: 401 DMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYN 460

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD---------------- 387
           +L+  YG+    +    +  +M+E G++ +V  Y +L+  +C D                
Sbjct: 461 TLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICR 520

Query: 388 ------------------VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
                             VG   +A   F++M  SE   P   T++ +I     +GK++E
Sbjct: 521 GVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSE-ISPTLVTYNVLIDGLCKKGKLTE 579

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           AE    ++  +G  P++    SLI  Y  A      +     +  LGI P  R
Sbjct: 580 AEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVR 632



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 151/350 (43%), Gaps = 38/350 (10%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCA-RMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           K   LF ++ + G + D   ++  I  A ++ NL    +E+ + M   G  P+   Y+ +
Sbjct: 159 KVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNL-KMGMEFLDSMRKRGVRPNVFIYNVL 217

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I    R   +  A  ++D   N         ++TLI  Y   G  D    + E MK   V
Sbjct: 218 IGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSV 277

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            PN+IT+N+LL  + + ++  + +++ KEM  NG  P+  TY+ L     R   G   + 
Sbjct: 278 APNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAME 337

Query: 362 VYREMKEKGMQLS-----------------------------------VTLYNTLLAMCA 386
           +Y +  EKG++++                                     +YNT +    
Sbjct: 338 LYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYC 397

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
            +G  ++A    E M+S    +P+S TF+S+I       ++ +AE    +M E G  P++
Sbjct: 398 RIGDMNKAILTIERMESF-GLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSV 456

Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
               +LI  YGK    D   + L ++ E+G+ P+    G L+N + +  K
Sbjct: 457 ETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGK 506



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 163/383 (42%), Gaps = 45/383 (11%)

Query: 137 IILNNMTNP---DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
           I+LN +      + A   L  FT     + EVI YN  +  + +  D++KA    + M  
Sbjct: 356 ILLNGLCKQGKVEKAEEILKKFTENGLVADEVI-YNTFVNGYCRIGDMNKAILTIERMES 414

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
            G++P+++TF++LI         +KA EW ++M   G  P   TY+++ID YG+    + 
Sbjct: 415 FGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDR 474

Query: 254 AFGLYDRARNEKWRIDPNA-------------------------------------FSTL 276
            F + ++   E+  + PN                                      ++ L
Sbjct: 475 CFQILEQM--EEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNML 532

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           I      G     L  ++EM    + P ++TYN L+D + +  +  + +    ++T +G 
Sbjct: 533 IDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGH 592

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
           SP+  TY SL+  Y  A      L +Y  MK  G++ +V  Y+ L++ C+  G   E  E
Sbjct: 593 SPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGI--ELVE 650

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
              +     N  PD   +++MI   +  G   +A ++   ML+ G  P+     SLI  +
Sbjct: 651 KLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGH 710

Query: 457 GKAQRTDDVVRALNRLPELGITP 479
            +  +  ++   +N +    + P
Sbjct: 711 FREGKLSNIKDLVNNMKAKELAP 733



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 139/299 (46%), Gaps = 9/299 (3%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           C+D  + +AE +  DM+ RGV P+   ++ LI  + M      A+ +F+ M      P  
Sbjct: 502 CKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTL 561

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           +TY+ +ID   + G +  A     +  +     D   +++LI  Y  AGN   CL +YE 
Sbjct: 562 VTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYET 621

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           MK +G+KP + TY+ L+   G +K   + V+ +Y EM    L P+   Y +++  Y    
Sbjct: 622 MKNLGIKPTVRTYHPLIS--GCSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIG 679

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             +   S+++ M ++G+      YN+L+      G      ++  +MK+ E   P + T+
Sbjct: 680 NTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKE-LAPKADTY 738

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV---LTSLIQCYGKAQRTDDVVRALN 470
             ++         S A   + EM+E  F PN  +   LT+ ++  G+ Q    +   +N
Sbjct: 739 DILVKGHCDLKDFSGAYVWYREMVENNFLPNASICNELTAGLEQEGRLQEVQVICSEMN 797



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 3/253 (1%)

Query: 151 ALTYFTNKLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL +F   +++  S  ++ YNV +    K   L +AE     +   G  PD +T+++LIS
Sbjct: 545 ALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLIS 604

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   +K +  +E M + G  P   TY  +I    + G +E+   LY+         
Sbjct: 605 GYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEG-IELVEKLYNEMLQMNLLP 663

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D   ++ +I  Y   GN     ++++ M   G+ P+ +TYN+L+    R  +   +K + 
Sbjct: 664 DRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLV 723

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             M    L+P  +TY  L++ +   +        YREM E     + ++ N L A     
Sbjct: 724 NNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNASICNELTAGLEQE 783

Query: 389 GYTDEAFEIFEDM 401
           G   E   I  +M
Sbjct: 784 GRLQEVQVICSEM 796



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 2/161 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           ++  E+L+++ML   + PD V ++ +I C A + N   KA    + M   G  PD +TY+
Sbjct: 646 IELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGN-TQKAYSLHQGMLDQGIHPDKMTYN 704

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           S+I  + R G +     L +  + ++     + +  L+K +    +F G    Y EM   
Sbjct: 705 SLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVEN 764

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              PN    N L   + +  R  +V+ I  EM   G+  +W
Sbjct: 765 NFLPNASICNELTAGLEQEGRLQEVQVICSEMNVKGIINHW 805



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 3/214 (1%)

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F   ++++ E++  G + +   Y   +    + +           M   G+ PN   Y  
Sbjct: 157 FVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNV 216

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+    R +   D   ++ EM    +  S+  YNTL+     VG  D AF++ E MK  +
Sbjct: 217 LIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKE-K 275

Query: 406 NCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +  P+  TF+S+++ +C  R K+ EA ++  EM   GF P+ +  + L     +    + 
Sbjct: 276 SVAPNIITFNSLLSGLCKMR-KMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNG 334

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
            +    +  E GI  ++     LLN + +  K E
Sbjct: 335 AMELYEQATEKGIRINNYTGSILLNGLCKQGKVE 368


>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 613

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 157/303 (51%), Gaps = 3/303 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           + +AE++F+ ML+RGV+ D   F+++IS   ++ N+  +A   F+ +   G   +A TY 
Sbjct: 301 IAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNMK-RAFALFDELNERGLVANAHTYG 359

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           ++I     +G ++ A  L +  +++   ++   F+TLI  Y   G  D  L + + M+  
Sbjct: 360 ALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKK 419

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G + ++ TYN +   + +  R  + K     M + G+ PN  ++  ++  + +     + 
Sbjct: 420 GFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEA 479

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
             V+++MK+KG + +V  YNTL+   +  G   EA+ + ++M+S      D +T+++++ 
Sbjct: 480 ERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESI-GMTSDIYTYTTLVH 538

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                GKV EA  + NE+   G   ++   T++I    K  R+++  R  + +   G+TP
Sbjct: 539 GECVFGKVEEALTLLNEVCRKGLAISIVTYTAIISGLSKEGRSEEAFRLYDEMMAAGLTP 598

Query: 480 DDR 482
           DDR
Sbjct: 599 DDR 601



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 169/352 (48%), Gaps = 5/352 (1%)

Query: 132 EQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD--LDKAERLFD 189
           ++ C++ L  +   D   ++L +F   ++   +V +Y++T+ +   C+   +++A+ L  
Sbjct: 180 DRSCIVCLLALKRSDQMVMSLGFFKKMVEFKVDVTVYSMTIVIDGLCKKGRVERAKDLML 239

Query: 190 DMLDRGVKPDNVTFSTLISCARMNNLPNKAV-EWFERMPSFGCDPDALTYSSMIDAYGRA 248
           +M  +G+KP+ VT++TL++ A +  +  + V E    M       +A TY+ +I+ YG +
Sbjct: 240 EMTGKGIKPNVVTYNTLVN-AYIKIMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSS 298

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           G +  A  ++++        D + F+++I      GN      +++E+   G+  N  TY
Sbjct: 299 GKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTY 358

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
             L+     + +    + +  EM   GL  N   + +L+  Y +    ++ L +   M++
Sbjct: 359 GALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEK 418

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
           KG +  +  YNT+      +   +EA      M   +   P++ +F+ MI I    G + 
Sbjct: 419 KGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTM-VEKGVDPNAVSFTIMIDIHCKEGNLV 477

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           EAE +F +M + G +PN+    +LI  Y K  +  +  R  + +  +G+T D
Sbjct: 478 EAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSD 529



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 124/256 (48%), Gaps = 40/256 (15%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++++N  +  + K   +D+A R+ D M  +G + D  T++T+       N   +A  W  
Sbjct: 390 LVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLF 449

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G DP+A++++ MID + + GN      L +  R                      
Sbjct: 450 TMVEKGVDPNAVSFTIMIDIHCKEGN------LVEAER---------------------- 481

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  V+++MK  G KPN++TYN L+D   +  +  +   +  EM   G++ +  TY 
Sbjct: 482 -------VFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYT 534

Query: 345 SLLRAYGRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           +L+  +G   +G  E+ L++  E+  KG+ +S+  Y  +++  +  G ++EAF ++++M 
Sbjct: 535 TLV--HGECVFGKVEEALTLLNEVCRKGLAISIVTYTAIISGLSKEGRSEEAFRLYDEMM 592

Query: 403 SSENCQPDSWTFSSMI 418
           ++    PD   ++S++
Sbjct: 593 AA-GLTPDDRVYTSLV 607



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 170/379 (44%), Gaps = 15/379 (3%)

Query: 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
           N++  +  + F+ M   G   D  +    + A  R+  + M+ G + +    ++++D   
Sbjct: 158 NSMFEEGFKVFDYMVHNGLKIDDRSCIVCLLALKRSDQMVMSLGFFKKMV--EFKVDVTV 215

Query: 273 FSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
           +S  I + G    G  +   ++  EM   G+KPN++TYN L++   +      V  + + 
Sbjct: 216 YSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLRL 275

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           M  + +  N  TY  L+  YG +    +   V+ +M E+G++  + ++ ++++    +G 
Sbjct: 276 MEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGN 335

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
              AF +F+++ +      ++ T+ ++I      G++  AE + NEM   G + NL +  
Sbjct: 336 MKRAFALFDEL-NERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFN 394

Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK--LVECVEK 508
           +LI  Y K    D+ +R  + + + G   D      +   + +  + E  K  L   VEK
Sbjct: 395 TLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEK 454

Query: 509 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKK---AYCNCLIDLCVNLNLLEN 565
                     ++++    EG+   EA  +F  + K  +K      N LID       L+ 
Sbjct: 455 GVDPNAVSFTIMIDIHCKEGNL-VEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKE 513

Query: 566 ACKLLE----LGLTLEVYT 580
           A +L +    +G+T ++YT
Sbjct: 514 AYRLKDEMESIGMTSDIYT 532


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 116/458 (25%), Positives = 198/458 (43%), Gaps = 49/458 (10%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+AL     K      VI Y   ++      D D A RLF+ M   G+KPD   ++ L  
Sbjct: 401 AMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTD 460

Query: 209 --CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
             C        +A E +  +   G     + Y+++ID + +AGN + A  L +R  +E  
Sbjct: 461 ALCK-----AGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGC 515

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
             D   +S L+         +  L + ++M   G+K  +  Y  L+D M R  +    K 
Sbjct: 516 TPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKR 575

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +Y EMT +G  P+  TY   + +Y +    ED   +  +M+ +G+   V  YN L+  C 
Sbjct: 576 MYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCG 635

Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS-----EAEAMFN------ 435
            +GY D AF   + M  + +C+P+ WT+  ++     +G ++     +   M+N      
Sbjct: 636 HMGYIDRAFSTLKRMVGA-SCEPNYWTYCLLLKHL-LKGNLAYVRSVDTSGMWNLIELDI 693

Query: 436 ------EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
                  M++ G  P +   +SLI  + KA R ++    L+ +   G++P++     L+ 
Sbjct: 694 TWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIK 753

Query: 490 VMTQTPKEE-----LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 544
               T   E     +  + EC  +   +     +LL+     EGDF+K            
Sbjct: 754 CCCDTKFFEKALSFVSIMSECGFQPQLE---SYRLLVVGLCNEGDFEK------------ 798

Query: 545 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 582
           VK  +C+ L++L  N +  E A K+L  GL    Y DI
Sbjct: 799 VKSLFCD-LLELGYNHD--EVAWKILNDGLLKAGYVDI 833



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 136/316 (43%), Gaps = 39/316 (12%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
           A  LFD M   GV P  +T++ +I         N A++  E M   GC PD  TY+++I 
Sbjct: 192 ARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLI- 250

Query: 244 AYGRAGN-VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
            YG      E A  L + A  E +      F+ LI  Y  A  FD  L +  +M +   K
Sbjct: 251 -YGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCK 309

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
            ++  +  L++++ +  R  + K +  E++ NGL PN  TY S++  Y ++         
Sbjct: 310 LDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKS--------- 360

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
                                     G  D A E+ + M   + CQP++WT++S++    
Sbjct: 361 --------------------------GKVDIALEVLK-MMERDGCQPNAWTYNSLMYGLV 393

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
              K+ +A A+  +M + G  PN+   T+L+Q        D+  R    + + G+ PD+ 
Sbjct: 394 KDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEH 453

Query: 483 FCGCLLNVMTQTPKEE 498
               L + + +  + E
Sbjct: 454 AYAVLTDALCKAGRAE 469



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 151/332 (45%), Gaps = 5/332 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +  + K   ++ A ++ + M   G  PD+ T++TLI     +    +A E   
Sbjct: 208 VMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIY-GLCDQKTEEAEELLN 266

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
                G  P  +T++++I+ Y  A   + A  + ++  + K ++D   F  LI       
Sbjct: 267 NAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKD 326

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  +  E+ A G+ PN+ITY +++D   ++ +      + K M  +G  PN  TY 
Sbjct: 327 RLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYN 386

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL+    + +     +++  +M++ G+  +V  Y TLL    D    D AF +FE M+ +
Sbjct: 387 SLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQN 446

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
              +PD   + +++T   C  K   AE  ++ ++  G        T+LI  + KA  TD 
Sbjct: 447 -GLKPDEHAY-AVLTDALC--KAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDF 502

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
               + R+ + G TPD      LL+ + +  +
Sbjct: 503 AATLIERMIDEGCTPDSYTYSVLLHALCKQKR 534



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 140/320 (43%), Gaps = 8/320 (2%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + + YN  +K + K  DL  A R F  +L+ G++P+  T + L+          KA   F
Sbjct: 67  DTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLF 126

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             MP  GC  +  +Y+ +I     A  V  A  L+   + +    +  AF+ LI     +
Sbjct: 127 LMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKS 186

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLL---DTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           G       +++ M   GV P+++TYN ++     +GR     ++K +   M  NG  P+ 
Sbjct: 187 GRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKEL---MEKNGCHPDD 243

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY +L+      +  E    +   +KE      VT  N +   C    + D+A  +   
Sbjct: 244 WTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKF-DDALRMKNK 302

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M SS+ C+ D   F  +I     + ++ EA+ + NE+   G  PN+   TS+I  Y K+ 
Sbjct: 303 MMSSK-CKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSG 361

Query: 461 RTDDVVRALNRLPELGITPD 480
           + D  +  L  +   G  P+
Sbjct: 362 KVDIALEVLKMMERDGCQPN 381



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 137/329 (41%), Gaps = 37/329 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  ++   +    +   R++  ++  G+ PD VT++T+I           A  +F  + 
Sbjct: 36  YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLL 95

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G +P+  T ++++  Y R G +  A  L+        + +  +++ LI+    A    
Sbjct: 96  EGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVR 155

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L ++  MK  G  PN+  +  L+  + ++ R    + ++  M  NG+ P+  TY +++
Sbjct: 156 KALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMI 215

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             Y +     D L +   M++ G                                    C
Sbjct: 216 VGYSKLGRMNDALKIKELMEKNG------------------------------------C 239

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD WT++++I    C  K  EAE + N  ++ GF P +   T+LI  Y  A++ DD +R
Sbjct: 240 HPDDWTYNTLI-YGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALR 298

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK 496
             N++       D +  G L+N + +  +
Sbjct: 299 MKNKMMSSKCKLDLQVFGKLINSLIKKDR 327


>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 489

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 153/335 (45%), Gaps = 12/335 (3%)

Query: 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF 203
            PD A           +  +++ L+N  +    K R   KA  L    L+R   PD VT+
Sbjct: 142 RPDIAVRLFLSLHRSHRVVQDLPLFNSLLDALGKSRHASKAASLVR-ALERRFPPDVVTY 200

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR--- 260
           +TL          ++A++   +M   G  P   TY+ ++  + RAG ++ A+  + +   
Sbjct: 201 NTLADGWCRAKDTSRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQIQHAWNFFLQMKK 260

Query: 261 --ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
             A++E  + D  +++T+I   G AG  D    +++EM   G  P++ TYN L+  + + 
Sbjct: 261 RGAKDESCKPDIVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSVATYNALIQVICKK 320

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
                  T++ +M      PN  TY  L+R        +  + +   MK +G +  V  Y
Sbjct: 321 GNVEDAVTVFDDMVRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTY 380

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK---VSEAEAMFN 435
           N L+    + G  ++A  +FE M   E+C P+  T++ +I+    R +   ++ A  M  
Sbjct: 381 NVLIRYSFEEGEIEKALCLFERMSKGEDCLPNQDTYNIIISAMFVRKRAEDMATAARMVM 440

Query: 436 EMLEAGFEPNLFVLTSL---IQCYGKAQRTDDVVR 467
           EM+E G+ P  F+L  +   +   G  Q + D++R
Sbjct: 441 EMVERGYLPRRFMLNRVLNGLMLTGNQQISRDLLR 475



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 95/182 (52%), Gaps = 6/182 (3%)

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P+++TYN L D   RAK   +   + ++M ++G++P   TY  +L+ + RA   +   + 
Sbjct: 195 PDVVTYNTLADGWCRAKDTSRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQIQHAWNF 254

Query: 363 YREMKEKGMQ-----LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           + +MK++G +       +  Y T++      G  D+A ++F++M S E C P   T++++
Sbjct: 255 FLQMKKRGAKDESCKPDIVSYTTIIHGLGVAGQLDKARKLFDEM-SKEGCTPSVATYNAL 313

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I +   +G V +A  +F++M+   + PN+   T LI+      + D  ++ + R+   G 
Sbjct: 314 IQVICKKGNVEDAVTVFDDMVRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEGC 373

Query: 478 TP 479
            P
Sbjct: 374 EP 375


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 106/460 (23%), Positives = 199/460 (43%), Gaps = 47/460 (10%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+AL     +   +  VI Y   ++   K  + D A RLF+ M   G+ PD   ++ L  
Sbjct: 516 AMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTD 575

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
               +    +A E +  +   G     +TY+S++D + +AGN E A  L ++  NE  + 
Sbjct: 576 ALCKSG---RAEEAYSFLVKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKA 632

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D + +S L++        +  L++ ++M   GVK N++ Y  ++  M +  +    K+++
Sbjct: 633 DSHTYSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMF 692

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            EM  +G  P+  TY   + +Y +    E+   +  EM+  G+   V  YN  +  C  +
Sbjct: 693 NEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHM 752

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTF----SSMITICSCRGKVSEAEAMFN--------- 435
           GY D AF   + M  + +C+P+ WT+       + +        +   M+N         
Sbjct: 753 GYMDCAFSTLKRMIDA-SCEPNYWTYWLLLKHFLKMSLANAHYVDTSGMWNWIKLDTVWQ 811

Query: 436 ---EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF------CGC 486
               M++ G  P     +S+I  + KA R ++    L+ +    I+P++        C C
Sbjct: 812 LLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCC 871

Query: 487 LLNVMTQTPKEELGKLVEC-VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 545
            + +  +     +  ++EC  +       Y++  L +    EGD+ K             
Sbjct: 872 DIKLF-EKAASFVTNMIECGFQPHLESYHYLITGLCD----EGDYDK------------A 914

Query: 546 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR 585
           K  +C+ L+++  N N  E A K+L  GL    + DI S+
Sbjct: 915 KALFCD-LLEMDYNHN--EVAWKILNDGLLKAGHVDICSQ 951



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 125/274 (45%), Gaps = 2/274 (0%)

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           + ++   G  PD +TY++MI AY + G++ +A   +   R     +D    + L+  Y  
Sbjct: 171 YSQLVQEGLLPDTVTYNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCR 230

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            G+      +   M  +G + N  +Y  L+  +   +   +   +   M  +G SPN +T
Sbjct: 231 TGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHT 290

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y  L+R   +     D   +  EM  +G+  SV  YN ++      G   +A  I + + 
Sbjct: 291 YTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGI-KTLM 349

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
               C PD WT++S+I    C GK  EAE + N  +  GF P +   T++I  Y KA++ 
Sbjct: 350 EGNGCNPDDWTYNSLIH-GLCGGKPDEAEELLNGAIARGFSPTVITFTNIINGYCKAEKI 408

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           DD +R  + +       D +  G L++V+ +  +
Sbjct: 409 DDALRVKSIMISSKCKLDLQAYGVLISVLIKKHR 442



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 138/313 (44%), Gaps = 4/313 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y V + V  K   L +A+   +++   G+ P+ V ++++I           A+E F+   
Sbjct: 430 YGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTE 489

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC P+A TYSS+I    +   +  A  L  + + +        ++TLI+       FD
Sbjct: 490 HEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFD 549

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               ++E M+  G+ P+   YN L D + ++ R  +    Y  +   G+     TY SL+
Sbjct: 550 NAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEA---YSFLVKKGVVLTKVTYTSLV 606

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             + +A   E   ++  +M  +G +     Y+ LL         +EA  I + M +    
Sbjct: 607 DGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQM-TLRGV 665

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           + +   ++ +I+     GK   A++MFNEM+ +G +P+    T  I  Y K  R ++   
Sbjct: 666 KGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGH 725

Query: 468 ALNRLPELGITPD 480
            +  +   G+ PD
Sbjct: 726 LIGEMERNGVAPD 738



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 140/334 (41%), Gaps = 39/334 (11%)

Query: 167 LYNVTMKVFRKCRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           L+  T+ +   C++  +  A  L D+M  RGV P   T++ +I     +     A+    
Sbjct: 288 LHTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKT 347

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   GC+PD  TY+S+I      G  + A  L + A    +      F+ +I  Y  A 
Sbjct: 348 LMEGNGCNPDDWTYNSLIHGLC-GGKPDEAEELLNGAIARGFSPTVITFTNIINGYCKAE 406

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  L V   M +   K ++  Y  L+  + +  R  + K    E+  NGLSPN   Y 
Sbjct: 407 KIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYT 466

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           S++ AY +                                   VG    A E+F+ +   
Sbjct: 467 SIIDAYCK-----------------------------------VGKVGAALEVFK-LTEH 490

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           E C+P++WT+SS+I       K+ +A A+  +M E G  P +   T+LIQ   K    D+
Sbjct: 491 EGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDN 550

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
             R    + + G+TPD++    L + + ++ + E
Sbjct: 551 AFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAE 584



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 142/329 (43%), Gaps = 5/329 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +  + K   L  A  +   M   G  PD+ T+++LI        P++A E      
Sbjct: 326 YNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIH-GLCGGKPDEAEELLNGAI 384

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  P  +T++++I+ Y +A  ++ A  +     + K ++D  A+  LI +        
Sbjct: 385 ARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLK 444

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              +   E+ A G+ PN++ Y +++D   +  +      ++K     G  PN  TY+SL+
Sbjct: 445 EAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLI 504

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               + +     +++  +M+E G+   V  Y TL+         D AF +FE M+ +   
Sbjct: 505 YGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQN-GL 563

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD   + +++T   C  K   AE  ++ +++ G        TSL+  + KA  T+    
Sbjct: 564 TPDEQAY-NVLTDALC--KSGRAEEAYSFLVKKGVVLTKVTYTSLVDGFSKAGNTEFAAA 620

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK 496
            + ++   G   D      LL  + +  K
Sbjct: 621 LIEKMVNEGCKADSHTYSVLLQALCKQKK 649



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 117/303 (38%), Gaps = 64/303 (21%)

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           EW  R P F     A ++++++    R      A   YD+              ++I   
Sbjct: 78  EWVARRPGF--RHTAASHAALLQLLAR----RRAPANYDKL-----------VVSMISCS 120

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMIT---YNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           GTA +    ++  + ++  G K   ++   YN  L ++ R      +  +Y ++   GL 
Sbjct: 121 GTAEDMREAVDAIQAIRRAGGKRLALSPKCYNLALRSLLRFDMTEHMGKLYSQLVQEGLL 180

Query: 338 PNWNTYASLLRAYGRARYGEDTLSV----YREMKEKGMQLSVTLYNTLLAMCADVG---- 389
           P+  TY +++ AY +    E +L++    +R ++E GM++     N LL      G    
Sbjct: 181 PDTVTYNTMIMAYCK----EGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDLRK 236

Query: 390 -------------------YT------------DEAFEIFEDMKSSENCQPDSWTFSSMI 418
                              YT             EA  +   M   + C P+  T++ +I
Sbjct: 237 ACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREAL-VLLLMMLQDGCSPNLHTYTLLI 295

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 G++ +A  + +EM   G  P+++   ++I  Y K+ R  D +     +   G  
Sbjct: 296 RGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCN 355

Query: 479 PDD 481
           PDD
Sbjct: 356 PDD 358


>gi|255661132|gb|ACU25735.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 426

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 162/356 (45%), Gaps = 30/356 (8%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++LY+  +++ RK  D  KA  +F  +   G  PD V ++ +I+      L  +A    
Sbjct: 43  DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 102

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M + G  P+  +YS+++  Y        A  ++   R  K  +D    + +I +YG  
Sbjct: 103 SEMRTAGVTPNTASYSTLLTMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQL 162

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       ++  M+ +G++PN+++YN LL   G A+   +   +++ M    +  N  TY
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S++  YG+    E   ++ +EM+ +G++ +   Y+T++++   VG  D A  +F+ ++S
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282

Query: 404 S------------------------------ENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           S                              E  +PD+      I I +  G++ EA  +
Sbjct: 283 SGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           F + ++AG   ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 343 FRQAIDAGEVKDIXVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILN 398



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 166/366 (45%), Gaps = 38/366 (10%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 63  AISIFS-RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 122 TMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 179

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++   
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAY 299

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPD---------------SWTFSS-------------- 416
              G    A  +  ++K  +N   D               +W F                
Sbjct: 300 ERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIXVFE 359

Query: 417 -MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
            MI + S   K      +F++M   G+ P+  V+  ++  YGK    D        + E+
Sbjct: 360 RMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQEV 419

Query: 476 GITPDD 481
           G    D
Sbjct: 420 GCVFSD 425



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENRKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G + +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 137/288 (47%), Gaps = 1/288 (0%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +  
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                 ++  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++
Sbjct: 122 TMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G D D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIXVFERMIHLFSKYKKYGNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQEVG 420


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 152/328 (46%), Gaps = 5/328 (1%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V +Y+V  +   K     K E+L D+M   GVKP+   ++  I      N   +A + F
Sbjct: 232 DVHIYSVLFQCCFKQGFPSKKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMF 291

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  P+  TYS+MID Y + GN+  A+GLY      +   +   F TL+  +  A
Sbjct: 292 ELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKA 351

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                  +++  M   GV PN+  YN L+    ++    +   +  EM    LSP+  TY
Sbjct: 352 RELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTY 411

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMK 402
             L+          +   +++ MK + +  S   YN+L+   C +    ++A ++  +M 
Sbjct: 412 TILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYN-IEKALDLCSEMT 470

Query: 403 SSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
           SS   +P+  TFS++I   C  R  +  A  ++ EM   G  P++   T+LI  + K   
Sbjct: 471 SS-GVEPNIITFSTLIDGYCKVRN-IKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEAN 528

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
             + +R  + + E GI P+D    CL++
Sbjct: 529 MKEALRLYSDMLEAGIHPNDHTFACLVD 556



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 137/312 (43%), Gaps = 13/312 (4%)

Query: 147 TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
            AA +L     K      + +YN  +    K  ++ +A  L  +M    + PD  T++ L
Sbjct: 355 VAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTIL 414

Query: 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
           I+         +A   F+RM +    P ++TY+S+I  + +  N+E A  L     +   
Sbjct: 415 INGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSG- 473

Query: 267 RIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
            ++PN   FSTLI  Y    N    + +Y EM   G+ P+++TY  L+D   +     + 
Sbjct: 474 -VEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEA 532

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL------- 377
             +Y +M + G+ PN +T+A L+  + +     D +  Y E  +     S+         
Sbjct: 533 LRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLENNQAATGKSIVQRSCWKYV 592

Query: 378 -YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
            +  L+      GY   A   F DMKS     PD W++ SM+       ++++   +  +
Sbjct: 593 GFTCLIEGLCQNGYILRASRFFSDMKSG-GVTPDIWSYVSMLKAHLREKRITDTMMLHCD 651

Query: 437 MLEAGFEPNLFV 448
           M++ G  PNL V
Sbjct: 652 MIKTGILPNLMV 663



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 119/281 (42%), Gaps = 48/281 (17%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L      L  S +V  Y + +        L +A RLF  M +  + P +VT+++LI 
Sbjct: 392 AMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIH 451

Query: 209 --CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW 266
             C   N    KA++    M S G +P+ +T+S++ID Y +  N++ A GLY     +  
Sbjct: 452 GFCKEYN--IEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGI 509

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP----- 321
             D   ++TLI  +    N    L +Y +M   G+ PN  T+  L+D   +  R      
Sbjct: 510 VPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAID 569

Query: 322 -------------------WQ-------------------VKTIYKEMTDNGLSPNWNTY 343
                              W+                       + +M   G++P+  +Y
Sbjct: 570 FYLENNQAATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWSY 629

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
            S+L+A+ R +   DT+ ++ +M + G+ L   + N LLAM
Sbjct: 630 VSMLKAHLREKRITDTMMLHCDMIKTGI-LPNLMVNQLLAM 669



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 109/233 (46%), Gaps = 7/233 (3%)

Query: 253 MAFGLYDRAR--NEKWRIDPNAFSTLIKLYGTAGN--FDGCLNVYEEMKAIGVKPNMITY 308
           +  GL++ A   + + R  P++ + L  L G      FD     Y+ M + G+ P++  Y
Sbjct: 177 LEMGLFEDALWVSREMRCSPDSKACLAILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIY 236

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           + L     +   P + + +  EMT  G+ PN   Y   +R   R    E+   ++  MK 
Sbjct: 237 SVLFQCCFKQGFPSKKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKI 296

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKV 427
            G+  ++  Y+ ++      G   +A+ +++++  +E   P+   F +++   C  R  V
Sbjct: 297 HGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAE-LLPNVVVFGTLVDGFCKARELV 355

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           + A ++F  M++ G +PNL+V   LI    K+    + +  L+ +  L ++PD
Sbjct: 356 A-ARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPD 407


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 144/305 (47%), Gaps = 3/305 (0%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF-ERMPSFGCDPD 234
           CRD  +D+A  +  +M  +GV+PD  TFS LI+        ++A++ + E + S    PD
Sbjct: 124 CRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPD 183

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
            +TY+++ID + ++GN+E A  +       K   +   +S+L+     AG+ D  L+++ 
Sbjct: 184 VVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFR 243

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
            M + G  PN++TY  L+  +  A +    + +  EMT     P+  +Y +LL  Y R  
Sbjct: 244 RMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLG 303

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             E+   +++EM  K        Y  L+    +    +EA  + E+MK++    PD  T+
Sbjct: 304 RIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTY 363

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           S ++   S   +  EA     EM+     PN    +SLI    KA R D  +  L  +  
Sbjct: 364 SIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVN 423

Query: 475 LGITP 479
             + P
Sbjct: 424 KRVEP 428



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 152/319 (47%), Gaps = 9/319 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLD-RGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           YNV +    K R   KA  +  +M D + V PD VT+ST+I+        ++A E    M
Sbjct: 44  YNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREM 103

Query: 227 PSF-GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
            +  G  PD +TY+S++D   R G ++ A  +    + +    D   FS LI  +  A  
Sbjct: 104 VTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARK 163

Query: 286 FDGCLNVYEE-MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
            D  L +Y+E + +   KP+++TY  L+D   ++    +   +   M      PN  TY+
Sbjct: 164 VDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYS 223

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKS 403
           SLL    +A   +  L ++R M  KG   +V  Y TL+  +CA   +  +A  +  D  +
Sbjct: 224 SLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCA--AHKVDAARLLMDEMT 281

Query: 404 SENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           +  C PD+ ++++++    CR G++ EA+ +F EM      P+    T L++ +  A R 
Sbjct: 282 ATCCPPDTVSYNALLD-GYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRL 340

Query: 463 DDVVRAL-NRLPELGITPD 480
           ++    L N     GI PD
Sbjct: 341 EEARFLLENMKTAAGIDPD 359



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 120/254 (47%), Gaps = 7/254 (2%)

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDG 288
           C P  +T++ +ID + +A  ++ A   +++ R     + PN   ++ ++     A     
Sbjct: 3   CQPTVVTWTIIIDGFCKANQLKQALACFEKMRE---FVAPNERTYNVVVNGLCKARLTSK 59

Query: 289 CLNVYEEMK-AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASL 346
              V +EM+    V P+++TY+ +++   +     +   I +EM T +G++P+  TY S+
Sbjct: 60  AYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSV 119

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +    R    +    + REMK KG++     ++ L+    +    DEA ++++++ +S +
Sbjct: 120 VDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSS 179

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
            +PD  T++++I      G + +A  M   M      PN+   +SL+    KA   D  +
Sbjct: 180 WKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQAL 239

Query: 467 RALNRLPELGITPD 480
               R+   G  P+
Sbjct: 240 DLFRRMTSKGCVPN 253



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 93/215 (43%), Gaps = 42/215 (19%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-----------SCARM 212
           +V+ Y++ +  + + +   +A     +M+ R V P+ VT+S+LI           +   +
Sbjct: 359 DVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVL 418

Query: 213 NNLPNKAVE----------------------W--FERMPSFGCDPDALTYSSMIDAYGRA 248
            N+ NK VE                      W     M + G +P  +TY+++++ + R 
Sbjct: 419 KNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRT 478

Query: 249 GNVEMAFGLYDRARNEKWR-------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           G +E+A+ L++  R +  +       +   AFS LI+    A   D  + V EE+++   
Sbjct: 479 GRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSREC 538

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           +P       ++D + RA R  +   +   ++  GL
Sbjct: 539 EPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 573


>gi|115479179|ref|NP_001063183.1| Os09g0417500 [Oryza sativa Japonica Group]
 gi|50253027|dbj|BAD29277.1| putative fertility restorer homologue A [Oryza sativa Japonica
           Group]
 gi|113631416|dbj|BAF25097.1| Os09g0417500 [Oryza sativa Japonica Group]
          Length = 618

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 165/377 (43%), Gaps = 40/377 (10%)

Query: 136 VIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           VI L+ M  PD A   L+ F  +L+    +   N  +    K   L +   LFD+ML RG
Sbjct: 113 VIALSQMALPDEA---LSVF-GRLRELPALPACNAILDGLVKAHMLARVWELFDEMLGRG 168

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           + P  VT++TLI+  R      KA E +++M +   DP+ +TY++MI A      +  A 
Sbjct: 169 MVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMICALCEEDCIGDAE 228

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
           GL+   +    R +   ++ L+  +    N    L  Y ++   G+ PN + +  L+D +
Sbjct: 229 GLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLIDGL 288

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE---------- 365
            +A R  + K I+ +M    ++P    Y SL+    R+ Y ++ L+ ++E          
Sbjct: 289 CQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKGLRPDE 348

Query: 366 -------------------------MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
                                    M++ G+ L+   YN L+      G  DEA      
Sbjct: 349 FTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTR 408

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M S    +P+  T+SS+I   S  G++  A A++ EM+  G EPN+   T+LI  + K  
Sbjct: 409 M-SEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNG 467

Query: 461 RTDDVVRALNRLPELGI 477
             D        + E GI
Sbjct: 468 DMDAAFWLQKEMEEKGI 484



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 145/316 (45%), Gaps = 7/316 (2%)

Query: 146 DTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF 203
           D    AL ++ + LK       +++   +    +   + +A+ +F DM    V P    +
Sbjct: 257 DNIKHALVFYYDLLKCGLVPNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVY 316

Query: 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
           ++LI  A  +    +A+ +F+ +   G  PD  T S ++      G +++A    +  + 
Sbjct: 317 NSLIHGAFRSGYAQEALAFFQEIIRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQ 376

Query: 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
               ++  A++ LI  Y  +GN D  L     M  +GV+PN++TY++L+D   +      
Sbjct: 377 SGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEI 436

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL- 382
              IY EM   G+ PN  TY +L+  + +    +    + +EM+EKG+  +    + L+ 
Sbjct: 437 AMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVD 496

Query: 383 AMCADVGYTDEAFEIFE---DMKSSENCQ-PDSWTFSSMITICSCRGKVSEAEAMFNEML 438
            +C +    D    I E     KS +N    +S T+ ++I      G+ +EA   F+ M 
Sbjct: 497 GLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMR 556

Query: 439 EAGFEPNLFVLTSLIQ 454
           ++G  P+ F  T +I+
Sbjct: 557 DSGMVPDRFTYTLVIR 572



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 5/150 (3%)

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            L++A+  AR  E    ++ EM  +GM  SV  YNTL+  C   G   +A+E+++ M  +
Sbjct: 147 GLVKAHMLARVWE----LFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQM-VA 201

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               P+  T+++MI        + +AE +F EM EAG  PNL+   +L+  + K      
Sbjct: 202 RRIDPNVVTYTTMICALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKH 261

Query: 465 VVRALNRLPELGITPDDRFCGCLLNVMTQT 494
            +     L + G+ P+D     L++ + Q 
Sbjct: 262 ALVFYYDLLKCGLVPNDVIFTTLIDGLCQA 291



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 103/226 (45%), Gaps = 8/226 (3%)

Query: 292 VYEEMKAIGVKPNMITYNNLLDT---MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
           +++EM   G+ P+++TYN L++     G   + W+V   + +M    + PN  TY +++ 
Sbjct: 160 LFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEV---WDQMVARRIDPNVVTYTTMIC 216

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
           A        D   ++ EMKE GM+ ++  YN L++          A   + D+       
Sbjct: 217 ALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKC-GLV 275

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           P+   F+++I       +++EA+ +F +M      P + V  SLI    ++    + +  
Sbjct: 276 PNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAF 335

Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECVEKSNSKL 513
              +   G+ PD+  C  ++  +    + ++  + +E +++S   L
Sbjct: 336 FQEIIRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIAL 381



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 47/236 (19%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           +  A R  + M   G+  +   ++ LI    +  NL ++A+    RM   G +P+ +TYS
Sbjct: 364 MQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNL-DEALVTCTRMSEVGVEPNVVTYS 422

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMK 297
           S+ID + + G +E+A  +Y     +   ++PN   ++ LI  +   G+ D    + +EM+
Sbjct: 423 SLIDGHSKNGEMEIAMAIYTEMVAKG--VEPNVVTYTALIHGHAKNGDMDAAFWLQKEME 480

Query: 298 AIGVKPNMITYNNLLDTMGRAKR--------------------PWQVKTI---------- 327
             G+  N IT + L+D + R  R                    P    ++          
Sbjct: 481 EKGIYSNAITVSVLVDGLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLY 540

Query: 328 ----YKE-------MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
               Y E       M D+G+ P+  TY  ++R      Y  + + +Y +M + G++
Sbjct: 541 IDGQYNEACHFFSCMRDSGMVPDRFTYTLVIRGLCMLGYVLNAMMLYADMVKVGVK 596


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 159/349 (45%), Gaps = 3/349 (0%)

Query: 135 CVIILNNMTNPDTAALA--LTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDML 192
           C  +L ++   D   L   L  F        +V  Y+  ++   K RD D A+++F++M 
Sbjct: 213 CNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMR 272

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
            R    + VT++ +IS    +    +A  + E M  +G  PDA TY ++++   + G ++
Sbjct: 273 RRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLK 332

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  L D       + +   ++TL+  +   G      ++  EM + GV+PN I Y+NL+
Sbjct: 333 EAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLI 392

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
             + +  +  +   +  EM   G  P+  TY  L++ + +    +    +  EM+  G+ 
Sbjct: 393 RGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGIL 452

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +   Y  ++      G + EA  + E+M  SE  +P+++ ++ +I   S  G +S A  
Sbjct: 453 PNAYTYGIMINGLCQNGESKEAGNLLEEM-ISEGLKPNAFMYAPLIIGHSKEGHISLACE 511

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
               M +A   P+LF   SLI+      R ++      ++ + G+ PD+
Sbjct: 512 SLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDE 560



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 148/309 (47%), Gaps = 6/309 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  + K R+L+KA++L   ML+ G+KP+  T++ L+     +N   K     + M 
Sbjct: 563 YSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSML 622

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD   Y  +I    R+ N+E+AF +           D + +S+LI       + +
Sbjct: 623 GSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADME 682

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + + +EM   G++P ++ YN L+D   R+    + + ++  +   GL PN  TY +L+
Sbjct: 683 KAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALI 742

Query: 348 RAYGRARYGE--DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
              G  + G+  D   +Y++M ++G+     +YN L   C+D    ++A  + E+M +  
Sbjct: 743 D--GNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRG 800

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
                   FS+++     RG++ E E + + M++    PN   + ++I  +GKA +  + 
Sbjct: 801 YAHVS--LFSTLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEA 858

Query: 466 VRALNRLPE 474
            R    L +
Sbjct: 859 HRVFAELQQ 867



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 156/345 (45%), Gaps = 7/345 (2%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +   Y   M    K   L +A+ L D+M   G+KP+ V ++TL+          +A +
Sbjct: 312 SPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFD 371

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
               M S G  P+ + Y ++I    + G +  A  L +       R D   +  L++ + 
Sbjct: 372 ILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHF 431

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
              + DG   +  EM+  G+ PN  TY  +++ + +     +   + +EM   GL PN  
Sbjct: 432 QHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAF 491

Query: 342 TYASLLRAYGRARYGEDTLSV--YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
            YA L+   G ++ G  +L+      M +  +   +  YN+L+   + VG  +EA E + 
Sbjct: 492 MYAPLI--IGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYA 549

Query: 400 DMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
            ++      PD +T+S +I   C  R  + +A+ +  +ML +G +PN    T L++ Y K
Sbjct: 550 QVQK-RGLVPDEFTYSGLIHGYCKTR-NLEKADQLLQQMLNSGLKPNADTYTDLLEGYFK 607

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 503
           +   + V   L  +   G  PD+   G ++  ++++   E+  +V
Sbjct: 608 SNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMV 652



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 1/298 (0%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A  L ++M+  G+KP+   ++ LI         + A E  E M      PD   Y+S+I
Sbjct: 473 EAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLI 532

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
                 G +E A   Y + +      D   +S LI  Y    N +    + ++M   G+K
Sbjct: 533 KGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLK 592

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           PN  TY +LL+   ++    +V +I + M  +G  P+ + Y  ++R   R+   E    V
Sbjct: 593 PNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMV 652

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
             E+++ G+   + +Y++L++    +   ++A  + ++M + E  +P    ++++I    
Sbjct: 653 LTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEM-AKEGLEPGIVCYNALIDGFC 711

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             G +S A  +F+ +L  G  PN    T+LI    K     D       + + GI PD
Sbjct: 712 RSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPD 769



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 140/316 (44%), Gaps = 5/316 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y+  ++   K   L +A +L ++M+  G +PD  T+  L+     +   + A E    
Sbjct: 386 IMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNE 445

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTA 283
           M + G  P+A TY  MI+   + G  + A  L +   +E  +  PNAF  + LI  +   
Sbjct: 446 MRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLK--PNAFMYAPLIIGHSKE 503

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+        E M    V P++  YN+L+  +    R  + +  Y ++   GL P+  TY
Sbjct: 504 GHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTY 563

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+  Y + R  E    + ++M   G++ +   Y  LL         ++   I + M  
Sbjct: 564 SGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLG 623

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S + +PD+  +  +I   S    +  A  +  E+ + G  P+L + +SLI    K    +
Sbjct: 624 SGD-KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADME 682

Query: 464 DVVRALNRLPELGITP 479
             V  L+ + + G+ P
Sbjct: 683 KAVGLLDEMAKEGLEP 698



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 125/265 (47%), Gaps = 1/265 (0%)

Query: 188 FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR 247
            ++M    V PD   +++LI          +A E++ ++   G  PD  TYS +I  Y +
Sbjct: 513 LENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCK 572

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
             N+E A  L  +  N   + + + ++ L++ Y  + + +   ++ + M   G KP+   
Sbjct: 573 TRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHI 632

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           Y  ++  + R++       +  E+  NGL P+ + Y+SL+    +    E  + +  EM 
Sbjct: 633 YGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMA 692

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
           ++G++  +  YN L+      G    A  +F+ +  ++   P+  T++++I      G +
Sbjct: 693 KEGLEPGIVCYNALIDGFCRSGDISRARNVFDSIL-AKGLLPNCVTYTALIDGNCKNGDI 751

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSL 452
           ++A  ++ +ML+ G  P+ FV   L
Sbjct: 752 TDAFDLYKDMLDRGIAPDAFVYNVL 776



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 97/208 (46%), Gaps = 1/208 (0%)

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
              L+  Y   G+      V   M  +G+ P     N LL  + RA     V  +   M 
Sbjct: 178 LDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFME 237

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             G+ P+  TY++ L A+ +AR  +    V+ EM+ +   ++   YN +++     G  +
Sbjct: 238 GAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVE 297

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           EAF   E+M       PD++T+ +++      G++ EA+A+ +EM  +G +PN+ V  +L
Sbjct: 298 EAFGFKEEM-VDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATL 356

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  + K  +  +    LN +   G+ P+
Sbjct: 357 VDGFMKEGKAAEAFDILNEMISAGVQPN 384



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 114/248 (45%), Gaps = 3/248 (1%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I++ N++  +   +A    T   K     ++ +Y+  +    K  D++KA  L D+M   
Sbjct: 635 IVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKE 694

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G++P  V ++ LI     +   ++A   F+ + + G  P+ +TY+++ID   + G++  A
Sbjct: 695 GLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDA 754

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
           F LY    +     D   ++ L      A + +  L + EEM   G   ++  ++ L+  
Sbjct: 755 FDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-HVSLFSTLVRG 813

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
             +  R  + + +   M D  + PN  T  +++  +G+A    +   V+ E+++K    S
Sbjct: 814 FCKRGRLQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVFAELQQKKASQS 873

Query: 375 VTLYNTLL 382
            T   +LL
Sbjct: 874 STDRFSLL 881


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 186/385 (48%), Gaps = 9/385 (2%)

Query: 151 ALTYFTNKLKAS-KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-S 208
           A T F + L++    V  +N  +    K   +++A  L+D+++ +G+ P+ V+++ +I  
Sbjct: 352 AFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILG 411

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
             R +N+ N A + ++ M   G  P+A+T++ ++D Y + G++E AF ++ R ++     
Sbjct: 412 HCRKDNI-NAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILP 470

Query: 269 DPNAFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                  +IK    AG +F+G  +++ +  + G  P  + YN ++D   +         +
Sbjct: 471 TDTTLGIIIKGLCKAGRSFEG-RDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNV 529

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           Y+EM + G++P+  TY SL+  + +    +  L +  +MK KG+++ +  Y TL+     
Sbjct: 530 YREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCK 589

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
                 A E+  +++ +    P+ + ++SMIT       V EA  ++ +M+  G   +L 
Sbjct: 590 RRDMKSAHELLNELRGA-GLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLK 648

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
             TSLI    K+ R          +   GI PDDR    L+N +    + E  + +  +E
Sbjct: 649 TYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKI--LE 706

Query: 508 KSNSKLGYVVKLLLEEQDIEGDFKK 532
             N K   +  +L+    I G FK+
Sbjct: 707 DMNGK-NMIPSVLIYNTLIAGHFKE 730



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 154/319 (48%), Gaps = 4/319 (1%)

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFG 230
           MK +    +L  A  L +++ + G+ P+ VT+S LI  C +  N+  KA E++  M + G
Sbjct: 270 MKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIE-KAFEFYSEMKTKG 328

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
                 + +S+++ Y +  + + AF +++ A  E    +   F+TL+      G  +   
Sbjct: 329 IRSSVYSLNSILEGYLKCQSWQNAFTMFNDAL-ESGLANVFTFNTLLSWLCKEGKMNEAC 387

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
           N+++E+ A G+ PN+++YNN++    R         +YKEM DNG +PN  T+  L+  Y
Sbjct: 388 NLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGY 447

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
            +    E+  S++  MK+  +  + T    ++      G + E  ++F     S+   P 
Sbjct: 448 FKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKF-VSQGFVPT 506

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
              ++++I      G ++ A  ++ EM E G  P+    TSLI  + K    D  ++ LN
Sbjct: 507 CMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLN 566

Query: 471 RLPELGITPDDRFCGCLLN 489
            +   G+  D +  G L++
Sbjct: 567 DMKRKGLKMDIKAYGTLID 585



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 121/262 (46%), Gaps = 7/262 (2%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LF+  + +G  P  + ++T+I         N A   +  M   G  P  +TY+S+ID + 
Sbjct: 494 LFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFC 553

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           +  N+++A  L +  + +  ++D  A+ TLI  +    +      +  E++  G+ PN  
Sbjct: 554 KGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRF 613

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVY 363
            YN+++          +   +YK+M + G+  +  TY SL+      GR  Y  D   ++
Sbjct: 614 IYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASD---IH 670

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
            EM  KG+      +  L+    + G  + A +I EDM + +N  P    ++++I     
Sbjct: 671 TEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDM-NGKNMIPSVLIYNTLIAGHFK 729

Query: 424 RGKVSEAEAMFNEMLEAGFEPN 445
            G + EA  + +EML+ G  P+
Sbjct: 730 EGNLQEAFRLHDEMLDRGLVPD 751



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 156/336 (46%), Gaps = 6/336 (1%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           LYN  + +     ++ +AE+ F     RGV+ D   +S  +    +      A+     M
Sbjct: 162 LYNFPLDIQEG--NILEAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREM 219

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            + G  P   T++S+I A  + GNV  A  L D   N    ++    ++L+K Y   GN 
Sbjct: 220 RAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNL 279

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              L +  E+   G+ PN +TY+ L+D   +     +    Y EM   G+  +  +  S+
Sbjct: 280 RSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSI 339

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           L  Y + +  ++  +++ +  E G+  +V  +NTLL+     G  +EA  +++++  ++ 
Sbjct: 340 LEGYLKCQSWQNAFTMFNDALESGLA-NVFTFNTLLSWLCKEGKMNEACNLWDEV-IAKG 397

Query: 407 CQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             P+  +++++I +  CR   ++ A  ++ EML+ GF PN    T L+  Y K    ++ 
Sbjct: 398 ISPNVVSYNNII-LGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENA 456

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
               +R+ +  I P D   G ++  + +  +   G+
Sbjct: 457 FSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGR 492



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 135/316 (42%), Gaps = 1/316 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + + + M  + K  D++ A  +F  M D  + P + T   +I          +  + F +
Sbjct: 438 VTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNK 497

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
             S G  P  + Y+++ID + + GN+ +A  +Y              +++LI  +    N
Sbjct: 498 FVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNN 557

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D  L +  +MK  G+K ++  Y  L+D   + +       +  E+   GLSPN   Y S
Sbjct: 558 IDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNS 617

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++  +      E+ + +Y++M  +G+   +  Y +L+      G    A +I  +M  S+
Sbjct: 618 MITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEM-LSK 676

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              PD    + +I     +G+   A  +  +M      P++ +  +LI  + K     + 
Sbjct: 677 GILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEA 736

Query: 466 VRALNRLPELGITPDD 481
            R  + + + G+ PD+
Sbjct: 737 FRLHDEMLDRGLVPDN 752



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 120/253 (47%), Gaps = 5/253 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +  F K  +++ A  ++ +M + G+ P  VT+++LI      N  + A++    M 
Sbjct: 510 YNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMK 569

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTAGN 285
             G   D   Y ++ID + +  +++ A  L +  R     + PN F  +++I  +    N
Sbjct: 570 RKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAG--LSPNRFIYNSMITGFKNMNN 627

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  +++Y++M   G+  ++ TY +L+D + ++ R      I+ EM   G+ P+   +  
Sbjct: 628 VEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTV 687

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+         E+   +  +M  K M  SV +YNTL+A     G   EAF + ++M    
Sbjct: 688 LINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEM-LDR 746

Query: 406 NCQPDSWTFSSMI 418
              PD+ T+  ++
Sbjct: 747 GLVPDNITYDILV 759



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 87/182 (47%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +  F K RD+  A  L +++   G+ P+   ++++I+  +  N   +A++ +++M 
Sbjct: 580 YGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMV 639

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G   D  TY+S+ID   ++G +  A  ++    ++    D  A + LI      G F+
Sbjct: 640 NEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFE 699

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + E+M    + P+++ YN L+    +     +   ++ EM D GL P+  TY  L+
Sbjct: 700 NARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILV 759

Query: 348 RA 349
             
Sbjct: 760 NG 761



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 67/344 (19%), Positives = 136/344 (39%), Gaps = 31/344 (9%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
           +LN  ++P +A         K++ +K      + + +     +  +A+ LFD        
Sbjct: 88  LLNRKSDPTSALKYFERIKKKIEFAKCTDAVCILLLILTNSAETHRAQYLFDQFASGKSV 147

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
             +     L+ C ++ N P    E                           GN+  A   
Sbjct: 148 RFSCLMDRLVECTKLYNFPLDIQE---------------------------GNILEAEQH 180

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
           + +A+     +D  A+S  + L     N    L++  EM+A G  P   T+ +++    +
Sbjct: 181 FLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVK 240

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
                +   +  +M + G S N     SL++ Y         L +  E+ E G+  +   
Sbjct: 241 EGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVT 300

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNE 436
           Y+ L+  C   G  ++AFE + +MK ++  +   ++ +S++     C+     A  MFN+
Sbjct: 301 YSVLIDGCCKNGNIEKAFEFYSEMK-TKGIRSSVYSLNSILEGYLKCQ-SWQNAFTMFND 358

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            LE+G   N+F   +L+    K  + ++     + +   GI+P+
Sbjct: 359 ALESGL-ANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPN 401



 Score = 42.7 bits (99), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           V++YN  +    K  +L +A RL D+MLDRG+ PDN+T+  L++
Sbjct: 717 VLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVN 760


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 147/300 (49%), Gaps = 1/300 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
            + A R   +ML R ++P++   +TL+         + AVE + R+   G   + +T ++
Sbjct: 504 FESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNA 563

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +I    + GN++ A  L  +     + +D   ++TLI      G  +    +  EM   G
Sbjct: 564 LIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQG 623

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           ++P+  TYN L+  M R  +  +   ++ E     L PN  TY  ++  Y +A   E+  
Sbjct: 624 IEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGE 683

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            ++ E+  + ++L+  +YNTL+      G T EAF++ +DM+ S+   P + T+SS+I  
Sbjct: 684 KLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMR-SKGIPPTTATYSSLIHG 742

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               G++ +A+ + +EM + G  PN+   T+LI  Y K  + D VV  L  +    I P+
Sbjct: 743 MCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPN 802



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 146/301 (48%), Gaps = 3/301 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWF 223
           +I Y+V +    K    ++A  +  + L++G  P+ V ++TLI    +M NL + A+   
Sbjct: 383 LITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGD-ALRIR 441

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M S G +P+++T +S+I  + + G +E A  + +   +  + I+P AF+T+I      
Sbjct: 442 GDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMN 501

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
             F+  L    EM    ++PN      L+  + +  +      ++  + + G   N  T 
Sbjct: 502 SRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTT 561

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+    +    ++ + + ++M E+G  L    YNTL++ C   G  +E F++  +M  
Sbjct: 562 NALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEM-V 620

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            +  +PD++T++ +I      GK+ EA  ++NE       PN++    +I  Y KA + +
Sbjct: 621 KQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIE 680

Query: 464 D 464
           +
Sbjct: 681 E 681



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 135/305 (44%), Gaps = 4/305 (1%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K  +L+K+  +F+ M  +GV PD   FST I+          A++ F  M   G  P+ +
Sbjct: 291 KANELEKSYWVFETM-RQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVV 349

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           TY+++I    + GN++ AF   ++   +        +S LI        F+   +V +E 
Sbjct: 350 TYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKET 409

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
              G  PN + YN L+D   +         I  +M   G++PN  T  S+++ + +    
Sbjct: 410 LEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQM 469

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
           E    +  EM  +G  ++   + T++  +C +  + + A     +M    N +P+    +
Sbjct: 470 EQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRF-ESALRFLREM-LLRNMRPNDGLLT 527

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           +++      GK S+A  ++  +LE GF  NL    +LI    K     + VR L ++ E 
Sbjct: 528 TLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLER 587

Query: 476 GITPD 480
           G   D
Sbjct: 588 GFVLD 592



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 178/422 (42%), Gaps = 38/422 (9%)

Query: 133 QDCVIILNNMTNPDTAALALTYF-TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDM 191
           + C  +L+++   +    +   F T +   S +V L++  +  F K   ++ A +LF DM
Sbjct: 280 KTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDM 339

Query: 192 LDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
              GV P+ VT++ LI    +  NL ++A  + E+M   G +   +TYS +I+   +   
Sbjct: 340 EKLGVSPNVVTYNNLIHGLCKHGNL-DEAFRFKEKMVKDGVNATLITYSVLINGLMKLEK 398

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
              A  +      + +  +   ++TLI  Y   GN    L +  +M + G+ PN +T N+
Sbjct: 399 FNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNS 458

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           ++    +  +  Q + I +EM   G S N   + +++         E  L   REM  + 
Sbjct: 459 IIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRN 518

Query: 371 MQLSVTLYNTLL-AMCADVGYTDEA---FEIFE---------------DMKSSENCQP-- 409
           M+ +  L  TL+  +C +  ++D     F + E                +  + N Q   
Sbjct: 519 MRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAV 578

Query: 410 -------------DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
                        D  T++++I+ C   GKV E   +  EM++ G EP+ F    LI   
Sbjct: 579 RLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGM 638

Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECVEKSNSKLGY 515
            +  + D+ V   N      + P+    G +++   +  K E G KL   +   N +L  
Sbjct: 639 CRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNS 698

Query: 516 VV 517
           VV
Sbjct: 699 VV 700



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 131/285 (45%), Gaps = 5/285 (1%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFE 224
           I YN  +    K   +++  +L  +M+ +G++PD  T++ LI    R+  L ++AV  + 
Sbjct: 594 ITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKL-DEAVNLWN 652

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
              S    P+  TY  MID Y +A  +E    L+     +   ++   ++TLI+ Y   G
Sbjct: 653 ECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNG 712

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N      ++++M++ G+ P   TY++L+  M    R    K +  EM   GL PN   Y 
Sbjct: 713 NTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYT 772

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+  Y +    +  ++V +EM    +  +   Y  ++   +  G    A ++  +M   
Sbjct: 773 ALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEM-VG 831

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
           +   PD+ T++ +       GK+ E + +  +    GF   LF++
Sbjct: 832 KGIVPDTVTYNVLTNGFCKEGKIEEGKLLAED--GVGFNSPLFLI 874



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 87/186 (46%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  Y V +  + K   +++ E+LF ++L + ++ ++V ++TLI     N    +A +  +
Sbjct: 663 VYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHD 722

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M S G  P   TYSS+I      G +E A  L D  R E    +   ++ LI  Y   G
Sbjct: 723 DMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLG 782

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  +NV +EM +  + PN ITY  ++D   ++        +  EM   G+ P+  TY 
Sbjct: 783 QMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYN 842

Query: 345 SLLRAY 350
            L   +
Sbjct: 843 VLTNGF 848



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            + + V+R +  KG+  +V     LL+        ++++ +FE M+  +   PD + FS+
Sbjct: 261 RNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMR--QGVSPDVYLFST 318

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
            I      GKV +A  +F +M + G  PN+    +LI    K    D+  R   ++ + G
Sbjct: 319 AINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDG 378

Query: 477 I 477
           +
Sbjct: 379 V 379


>gi|255661134|gb|ACU25736.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
 gi|255661138|gb|ACU25738.1| pentatricopeptide repeat-containing protein [Verbena halei]
 gi|255661140|gb|ACU25739.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 426

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 162/356 (45%), Gaps = 30/356 (8%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++LY+  +++ RK  D  KA  +F  +   G  PD V ++ +I+      L  +A    
Sbjct: 43  DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 102

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M + G  P+  +YS+++  Y        A  ++   R  K  +D    + +I +YG  
Sbjct: 103 SEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQL 162

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       ++  M+ +G++PN+++YN LL   G A+   +   +++ M    +  N  TY
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S++  YG+    E   ++ +EM+ +G++ +   Y+T++++   VG  D A  +F+ ++S
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282

Query: 404 S------------------------------ENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           S                              E  +PD+      I I +  G++ EA  +
Sbjct: 283 SGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           F + ++AG   ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 343 FRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILN 398



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 166/366 (45%), Gaps = 38/366 (10%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 63  AISIFS-RLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 179

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++   
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAY 299

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPD---------------SWTFSS-------------- 416
              G    A  +  ++K  +N   D               +W F                
Sbjct: 300 ERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFE 359

Query: 417 -MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
            MI + S   K      +F++M   G+ P+  V+  ++  YGK    D        + E+
Sbjct: 360 RMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQEV 419

Query: 476 GITPDD 481
           G    D
Sbjct: 420 GCVFSD 425



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G + +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 137/288 (47%), Gaps = 1/288 (0%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +  
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                 K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G D D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQEVG 420


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 141/313 (45%), Gaps = 1/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  M  +      +KA  +F  M   G++PD VT+++L+     N    +A + F+ M 
Sbjct: 80  YNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMV 139

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD  TY +++  Y   G +     L         ++D + F+ LI  Y      D
Sbjct: 140 KRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVD 199

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + V+ +M+  G+ PN + Y  ++D + +  R       +++M D GL+PN   Y SL+
Sbjct: 200 EVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLI 259

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A       E    +  E+ ++G+  ++  +NT+L      G   E+ ++F D+      
Sbjct: 260 HALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLF-DLLGHIGV 318

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD  T+S++I      GK+  A  +   M+  G +P+    ++LI  Y K  R +D + 
Sbjct: 319 NPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALA 378

Query: 468 ALNRLPELGITPD 480
               +   G+ PD
Sbjct: 379 LFKEMESNGVNPD 391



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 153/312 (49%), Gaps = 20/312 (6%)

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           PD V+++T+I         +KA   +  M      PDA+TY+S+I A  +A  ++ A  +
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68

Query: 258 YDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
                     + PN F+  +++  Y ++G  +  + ++ +M + G++P+++TYN+L+D +
Sbjct: 69  L------TVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYL 122

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +  +  + + I+  M   GL P+  TY +LL  Y       +   +   M + GMQL  
Sbjct: 123 CKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDH 182

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
            ++N L+         DE   +F  M+  +   P++  + ++I      G++ +A   F 
Sbjct: 183 HVFNILICAYTKQEKVDEVVLVFSKMR-QQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFE 241

Query: 436 EMLEAGFEPNLFVLTSLIQC---YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           +M++ G  PN+ V TSLI     Y K ++ ++++     + + GI P+  F   +L+ + 
Sbjct: 242 QMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIF---EILDQGINPNIVFFNTILDSLC 298

Query: 493 QTPKEELGKLVE 504
           +      G+++E
Sbjct: 299 KE-----GRVIE 305



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 104/202 (51%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           LD A   F+ M+D+G+ P+ V +++LI      +   KA E    +   G +P+ + +++
Sbjct: 233 LDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNT 292

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           ++D+  + G V  +  L+D   +     D   +STLI  Y  AG  DG + +   M ++G
Sbjct: 293 ILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVG 352

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           +KP+ +TY+ L++   +  R      ++KEM  NG++P+  TY  +L    R R      
Sbjct: 353 LKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAK 412

Query: 361 SVYREMKEKGMQLSVTLYNTLL 382
            +Y  + E G QL ++ YN +L
Sbjct: 413 ELYARITESGTQLELSTYNIIL 434



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 93/171 (54%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           +KAE L  ++LD+G+ P+ V F+T++          ++ + F+ +   G +PD +TYS++
Sbjct: 269 EKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTL 328

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           ID Y  AG ++ A  L     +   + D   +STLI  Y      +  L +++EM++ GV
Sbjct: 329 IDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGV 388

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
            P++ITYN +L  + R +R    K +Y  +T++G     +TY  +L  + +
Sbjct: 389 NPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIILMDFAK 439



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 145/318 (45%), Gaps = 36/318 (11%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-------SCARMNNL- 215
           +V+ YN  M    K     +A ++FD M+ RG+KPD  T+ TL+       +   M++L 
Sbjct: 111 DVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLL 170

Query: 216 ---------------------------PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
                                       ++ V  F +M   G  P+A+ Y ++ID   + 
Sbjct: 171 ALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKL 230

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           G ++ A   +++  ++    +   +++LI    T   ++    +  E+   G+ PN++ +
Sbjct: 231 GRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFF 290

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           N +LD++ +  R  + K ++  +   G++P+  TY++L+  Y  A   +  + +   M  
Sbjct: 291 NTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVS 350

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
            G++     Y+TL+     +   ++A  +F++M+S+    PD  T++ ++       + +
Sbjct: 351 VGLKPDSVTYSTLINGYCKINRMEDALALFKEMESN-GVNPDIITYNIILHGLFRTRRTA 409

Query: 429 EAEAMFNEMLEAGFEPNL 446
            A+ ++  + E+G +  L
Sbjct: 410 AAKELYARITESGTQLEL 427


>gi|259490098|ref|NP_001159276.1| uncharacterized protein LOC100304366 [Zea mays]
 gi|223943161|gb|ACN25664.1| unknown [Zea mays]
 gi|414590092|tpg|DAA40663.1| TPA: hypothetical protein ZEAMMB73_658820 [Zea mays]
 gi|414590093|tpg|DAA40664.1| TPA: hypothetical protein ZEAMMB73_658820 [Zea mays]
          Length = 535

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 153/330 (46%), Gaps = 13/330 (3%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           LY   + +  K R    A  L D+M +R V         L        +P++A + F RM
Sbjct: 137 LYASMIVLLAKHRHFGLARHLLDEMRERAVPISRQLILALTRRYVRAEMPSEAADLFRRM 196

Query: 227 PSFGCD-PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
             +G   PD  T +S++ A  +      A  L+D  R   +  D   ++ ++  +  AG 
Sbjct: 197 EEYGAGAPDPATLASLLAALSKKRLASEAQALFDSCRT-VFTPDVVLYTAVVHAWCRAGR 255

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D    V+ EM+  G+ PN+ TY  ++D M RA +  + + +  +M D+G  PN  T+ +
Sbjct: 256 LDEAERVFTEMQQSGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTTTFNA 315

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD-VGYTDEAFEIFEDMKS 403
           ++R++ +A   E  L V+ +M++   +  V  YN L+   C    G  D A ++ + M +
Sbjct: 316 IMRSHVKAGRSEQVLQVHNQMQQLRCEPDVITYNFLIETHCGKGQGNLDAALKVLDKM-T 374

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           ++ C PD  TF+ M  +    G +  A  ++ +M E   +PN+     L++ + K +  D
Sbjct: 375 AKKCVPDCHTFNPMFRLLLVLGNIGAAHKLYEKMRELQCKPNVVTYNCLLRLFNKEKSMD 434

Query: 464 DVVRALNRLPELGITPD--------DRFCG 485
            V+R    +   GI P+        + FCG
Sbjct: 435 MVLRMKKDMDAEGIEPNMHTYAALIEAFCG 464



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 117/240 (48%), Gaps = 3/240 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  Y   +    +   + +A+ L   M+D G  P+  TF+ ++          + ++   
Sbjct: 275 VYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTTTFNAIMRSHVKAGRSEQVLQVHN 334

Query: 225 RMPSFGCDPDALTYSSMIDAY-GRA-GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           +M    C+PD +TY+ +I+ + G+  GN++ A  + D+   +K   D + F+ + +L   
Sbjct: 335 QMQQLRCEPDVITYNFLIETHCGKGQGNLDAALKVLDKMTAKKCVPDCHTFNPMFRLLLV 394

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            GN      +YE+M+ +  KPN++TYN LL    + K    V  + K+M   G+ PN +T
Sbjct: 395 LGNIGAAHKLYEKMRELQCKPNVVTYNCLLRLFNKEKSMDMVLRMKKDMDAEGIEPNMHT 454

Query: 343 YASLLRAY-GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           YA+L+ A+ GR  +     ++   ++EK  + S  + + +L +    G   +  E+ E M
Sbjct: 455 YAALIEAFCGRGNWKRAHTTLKEMIEEKSFKPSKQVRDMVLVLLRKAGQLKKHEELVELM 514


>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 706

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 99/417 (23%), Positives = 187/417 (44%), Gaps = 40/417 (9%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y + +++  +   LD++  LF++ML++G  P+ + ++T+I     + + +K +  F +M 
Sbjct: 115 YTIMIRMTGRIGKLDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMM 174

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR-IDPNAFSTLIKL------- 279
              C P+  TYS ++      G +     + + +R    R I      TL KL       
Sbjct: 175 EKNCRPNEFTYSVILTLLAAEGQLHKLDKVVELSRKYMNRSIYAYLVRTLNKLGHASEAH 234

Query: 280 --------YGTAGNFDGCLNVYEEM-------KAI---------GVKPNMITYNNLLDTM 315
                   Y   G+ D CL++ E +       +AI         G+  + I YN +   +
Sbjct: 235 RLFCNMWSYHDRGDRDACLSMLESLCNAGKTVEAIDLLGKIHEKGINTDTIMYNTVFTAL 294

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           GR K+   +  +Y++M  +G  P+  TY  L+ ++GRA    + + ++ E++    +  +
Sbjct: 295 GRLKQISHLYDLYEKMKLDGPLPDIFTYNILISSFGRAGKVYEAIKIFEELENSDCKPDI 354

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YN+L+      G  DEA   F +M+  +   PD  T+S++I       KV  A  +F+
Sbjct: 355 ISYNSLINCLGKNGDLDEAHIRFREMQE-KGLNPDVVTYSTLIECFGKTDKVEMACRLFD 413

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
           EML  G  PN+     L+ C  ++ RT + V    +L + G+TPD      L  + + + 
Sbjct: 414 EMLAEGCFPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYSVLERLQSGSH 473

Query: 496 KEELGKLVECVEKSNSKLGYVVK-LLLEEQDIEGDFKKEATELFNSISKDVKKAYCN 551
           ++        V + N   G+VV  L    + ++GD ++      N+ +   +   CN
Sbjct: 474 RKLR------VRRKNPITGWVVSPLRYFLKQLQGDIRRSLRPHGNTATPASRSKSCN 524



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 157/365 (43%), Gaps = 33/365 (9%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   ++ + +  D D   R++ +M  +G   D   F+ L+     +   ++A + FE M 
Sbjct: 45  YKCLVQAYLRSCDSDNGFRVYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMK 104

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C+PD  TY+ MI   GR G ++ +  L++   N+    +  A++T+I+    +   D
Sbjct: 105 KKHCEPDEYTYTIMIRMTGRIGKLDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMVD 164

Query: 288 GCLNVYEEMKAIGVKPNMITYNNL------------LDTMGRAKRPWQVKTIYKEM--TD 333
             + ++ +M     +PN  TY+ +            LD +    R +  ++IY  +  T 
Sbjct: 165 KTILLFSKMMEKNCRPNEFTYSVILTLLAAEGQLHKLDKVVELSRKYMNRSIYAYLVRTL 224

Query: 334 NGLSPN----------WNTY--------ASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           N L             W+ +         S+L +   A    + + +  ++ EKG+    
Sbjct: 225 NKLGHASEAHRLFCNMWSYHDRGDRDACLSMLESLCNAGKTVEAIDLLGKIHEKGINTDT 284

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
            +YNT+      +      ++++E MK  +   PD +T++ +I+     GKV EA  +F 
Sbjct: 285 IMYNTVFTALGRLKQISHLYDLYEKMK-LDGPLPDIFTYNILISSFGRAGKVYEAIKIFE 343

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
           E+  +  +P++    SLI C GK    D+       + E G+ PD      L+    +T 
Sbjct: 344 ELENSDCKPDIISYNSLINCLGKNGDLDEAHIRFREMQEKGLNPDVVTYSTLIECFGKTD 403

Query: 496 KEELG 500
           K E+ 
Sbjct: 404 KVEMA 408



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 108/216 (50%), Gaps = 2/216 (0%)

Query: 135 CVIILNNMTNPDTAALALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDML 192
           C+ +L ++ N      A+      ++   + + I+YN       + + +     L++ M 
Sbjct: 252 CLSMLESLCNAGKTVEAIDLLGKIHEKGINTDTIMYNTVFTALGRLKQISHLYDLYEKMK 311

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
             G  PD  T++ LIS         +A++ FE + +  C PD ++Y+S+I+  G+ G+++
Sbjct: 312 LDGPLPDIFTYNILISSFGRAGKVYEAIKIFEELENSDCKPDIISYNSLINCLGKNGDLD 371

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A   +   + +    D   +STLI+ +G     +    +++EM A G  PN++TYN LL
Sbjct: 372 EAHIRFREMQEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCFPNIVTYNILL 431

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
           D + R+ R  +   +Y ++   GL+P+  TY+ L R
Sbjct: 432 DCLERSGRTAEAVDLYAKLKQQGLTPDSITYSVLER 467



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 148/348 (42%), Gaps = 14/348 (4%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ +  F    DL++   L +      +K +  T+  L+     +   +     +  M  
Sbjct: 14  NILIGFFGDGEDLERCIGLIEKW---DLKMNGYTYKCLVQAYLRSCDSDNGFRVYLEMKR 70

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G   D   ++ ++DA  +   V+ AF +++  + +    D   ++ +I++ G  G  D 
Sbjct: 71  KGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIRMTGRIGKLDE 130

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA---S 345
            L ++EEM   G  PN+I YN ++  +  ++   +   ++ +M +    PN  TY+   +
Sbjct: 131 SLALFEEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKNCRPNEFTYSVILT 190

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           LL A G+       L    E+  K M  S+  Y  L+     +G+  EA  +F +M S  
Sbjct: 191 LLAAEGQLH----KLDKVVELSRKYMNRSI--YAYLVRTLNKLGHASEAHRLFCNMWSYH 244

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           +        S + ++C+  GK  EA  +  ++ E G   +  +  ++    G+ ++   +
Sbjct: 245 DRGDRDACLSMLESLCNA-GKTVEAIDLLGKIHEKGINTDTIMYNTVFTALGRLKQISHL 303

Query: 466 VRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 512
                ++   G  PD      L++   +  K  E  K+ E +E S+ K
Sbjct: 304 YDLYEKMKLDGPLPDIFTYNILISSFGRAGKVYEAIKIFEELENSDCK 351


>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
          Length = 410

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 148/320 (46%), Gaps = 1/320 (0%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K  D+ +A R+FD+M   G+ P+ VT++ L+     +    K    FE M   G +P+  
Sbjct: 50  KGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLY 109

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           TY+ +I  + R G  E A  L+D         +  +++TLI      G       + + M
Sbjct: 110 TYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMM 169

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           +  G +P++IT+N L+D  G+A +       + +M   G  P+  TY  L+  + RAR  
Sbjct: 170 RTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDM 229

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
                   +MKE+G++ +   Y  L+   A   +  +AFEI   M+ +   + D+ T+  
Sbjct: 230 TRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKA-GLEVDAHTYGV 288

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           ++      G + +A  +F  M E G EP+  +   +I  YG+   +   ++ +  + + G
Sbjct: 289 LVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKG 348

Query: 477 ITPDDRFCGCLLNVMTQTPK 496
           + P+    G  + V+ +  K
Sbjct: 349 LIPNSASYGLTIRVLCKDDK 368



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 145/332 (43%), Gaps = 17/332 (5%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y   M  +      +K   LF++M   GV+P+  T++ LI          +A   F+ 
Sbjct: 74  VTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDE 133

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           MP  G   + ++Y+++I    R G +  A  L D  R E  R     F+ L+  YG AG 
Sbjct: 134 MPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGK 193

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               L  + +MKA G +P+ +TYN L+    RA+   +      +M + GL P   TY  
Sbjct: 194 MSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTI 253

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSS 404
           L+ ++ R  +      +   M++ G+++    Y  L+ A+C + G   +A ++F+ M   
Sbjct: 254 LIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCME-GNMKDARKLFQSM-GE 311

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-------LFVLTSLIQCYG 457
           +  +P +  +  MI      G   +A  +  EM + G  PN       + VL    +C  
Sbjct: 312 KGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQE 371

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
                DD+VRA       G+   +  C  LL+
Sbjct: 372 AEALLDDMVRA-------GLQTSESICQALLD 396



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 149/313 (47%), Gaps = 3/313 (0%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCR--DLDKAERLFDDMLDRGVKPDNVTFSTLISCARM 212
           F    +   E  LY     +   CR  + ++A  LFD+M  RG+  + V+++TLI+    
Sbjct: 96  FEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCR 155

Query: 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
           +     A +  + M + G  P  +T++ ++D YG+AG +  A   +++ +   ++     
Sbjct: 156 HGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVT 215

Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
           ++ LI  +  A +         +MK  G++P  +TY  L+D+  R     +   I   M 
Sbjct: 216 YNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGME 275

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
             GL  + +TY  L+RA       +D   +++ M EKG++ S  +Y+ ++      G + 
Sbjct: 276 KAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSY 335

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           +A ++  +M+  +   P+S ++   I +     K  EAEA+ ++M+ AG + +  +  +L
Sbjct: 336 KALKLIMEMR-QKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMVRAGLQTSESICQAL 394

Query: 453 IQCYGKAQRTDDV 465
           +    + + + +V
Sbjct: 395 LDAKARLRGSANV 407


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 149/315 (47%), Gaps = 6/315 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFER 225
           +N+ +    K   + +A+ +   M  RG KPD VT++ L+   C+R N   ++A E F R
Sbjct: 268 FNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSREN--VHEARELFNR 325

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G +PD L Y+ +ID Y +   V+ A  L+    N+       ++++LI     +G 
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 + +EM      P+++TYN L+D + +  R  +   +   M   G+ PN  TY +
Sbjct: 386 ISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNA 445

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++  Y           ++  M + G++  +  YN L+         DEA  +F++M+  +
Sbjct: 446 MMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMR-HK 504

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           N  PD  +++S+I      G++   + + +EM ++G  P++     L+  + K Q  D  
Sbjct: 505 NLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKA 564

Query: 466 VRALNRLPELGITPD 480
           +    ++ E GI PD
Sbjct: 565 ISLFRQIVE-GIWPD 578



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 138/303 (45%), Gaps = 3/303 (0%)

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALT 237
           R++D A   F+ M+     P    F  L+ +  RM + P  A+  F ++ S G  P   T
Sbjct: 34  RNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPT-AISLFTQLQSKGISPSIAT 92

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           ++ +I+ Y    +   AF L        ++ +   F+T+I  +   G     L+  + + 
Sbjct: 93  FTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLL 152

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
           A G   +  TY  L++ + +  +      + +EM  + + PN   Y++L+    +  +  
Sbjct: 153 AQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVS 212

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           D L +  ++ E+G+ L    YN+L+  C  VG   E  ++   M   EN  PD +TF+ +
Sbjct: 213 DALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKM-VRENVDPDDYTFNIL 271

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I      G++ EA+ +   M + G +P++    +L++ Y   +   +     NR+ + G+
Sbjct: 272 IDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGL 331

Query: 478 TPD 480
            PD
Sbjct: 332 EPD 334



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 151/330 (45%), Gaps = 2/330 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  M+ +    ++ +A  LF+ M+ RG++PD + ++ LI       + ++A+  F
Sbjct: 299 DIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLF 358

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + + +    P   +Y+S+ID    +G +     L D         D   ++ LI      
Sbjct: 359 KELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKE 418

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     L V   M   GVKPN++TYN ++D           K I+  M  +GL P+   Y
Sbjct: 419 GRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNY 478

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             L+  Y +    ++ + +++EM+ K +   +  YN+L+    ++G      E+ ++M  
Sbjct: 479 NVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCD 538

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S    PD  T++ ++          +A ++F +++E G  P+ +   +++    K ++  
Sbjct: 539 SGQ-SPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLK 596

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
               AL  L   G +P+ +    L+N + +
Sbjct: 597 MAEDALKHLLMHGCSPNVQTYTILINALCK 626



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 134/313 (42%), Gaps = 1/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +    K   +  A  L  +M    V+P+ V +S LI     +   + A+    ++ 
Sbjct: 163 YGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIG 222

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G   DA+TY+S+ID     G  +    L  +   E    D   F+ LI      G   
Sbjct: 223 ERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRIL 282

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V   M   G KP+++TYN L++     +   + + ++  M   GL P+   Y  L+
Sbjct: 283 EAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLI 342

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             Y + +  ++ + +++E+  K +  ++  YN+L+    + G      ++ ++M  S   
Sbjct: 343 DGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQ- 401

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD  T++ +I      G++ EA  +   M++ G +PN+    +++  Y      +    
Sbjct: 402 PPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKD 461

Query: 468 ALNRLPELGITPD 480
             NR+ + G+ PD
Sbjct: 462 IFNRMVKSGLEPD 474



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 151/346 (43%), Gaps = 3/346 (0%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I++N   +    A A +     LK+  +  ++ +N  +  F     + KA     ++L +
Sbjct: 95  ILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQ 154

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G   D  T+ TLI+    N     A+   + M      P+ + YS++ID   + G V  A
Sbjct: 155 GYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDA 214

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
            GL  +       +D   +++LI    + G +     +  +M    V P+  T+N L+D 
Sbjct: 215 LGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDA 274

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           + +  R  + + +   M+  G  P+  TY +L+  Y       +   ++  M ++G++  
Sbjct: 275 LCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPD 334

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           V  YN L+         DEA  +F+++  ++N  P   +++S+I      G++S  + + 
Sbjct: 335 VLNYNVLIDGYCKTKMVDEAMVLFKEL-CNKNLVPTIASYNSLIDGLCNSGRISHVKKLL 393

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +EM  +   P++     LI    K  R  + +  L  + + G+ P+
Sbjct: 394 DEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPN 439



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 139/283 (49%), Gaps = 10/283 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN+ +    K   + +A  +   M+ +GVKP+ VT++ ++    + N  N A + F
Sbjct: 404 DVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIF 463

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            RM   G +PD L Y+ +I+ Y +   V+ A  L+   R++    D  ++++LI      
Sbjct: 464 NRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNL 523

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       + +EM   G  P++ITYN LLD   + +   +  ++++++ + G+ P++ T 
Sbjct: 524 GRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTN 582

Query: 344 ASLLRAYGRA---RYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFE 399
            +++    +    +  ED L   + +   G   +V  Y  L+ A+C D G   EA  +  
Sbjct: 583 HAIVDNLCKGEKLKMAEDAL---KHLLMHGCSPNVQTYTILINALCKD-GSFGEAMLLLS 638

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            M+ ++   PD+ TF  +I +   R +  +AE +  EM+  G 
Sbjct: 639 KMEDNDR-PPDAITFEIIIGVLLQRNETDKAEKLREEMIARGL 680



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 131/310 (42%), Gaps = 9/310 (2%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +  +L   M+   V PD+ TF+ LI          +A      M   G  PD +TY++++
Sbjct: 248 EVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALM 307

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
           + Y    NV  A  L++R        D   ++ LI  Y      D  + +++E+    + 
Sbjct: 308 EGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLV 367

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P + +YN+L+D +  + R   VK +  EM  +   P+  TY  L+ A  +     + L V
Sbjct: 368 PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGV 427

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
              M +KG++ ++  YN ++         + A +IF  M  S   +PD   ++ +I    
Sbjct: 428 LVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS-GLEPDILNYNVLINGYC 486

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-- 480
               V EA  +F EM      P++    SLI       R   V   L+ + + G +PD  
Sbjct: 487 KTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVI 546

Query: 481 ------DRFC 484
                 D FC
Sbjct: 547 TYNILLDAFC 556



 Score = 47.0 bits (110), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 1/140 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +VI YN+ +  F K +  DKA  LF  +++ G+ PD  T   ++           A +
Sbjct: 542 SPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAED 600

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + +   GC P+  TY+ +I+A  + G+   A  L  +  +     D   F  +I +  
Sbjct: 601 ALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLL 660

Query: 282 TAGNFDGCLNVYEEMKAIGV 301
                D    + EEM A G+
Sbjct: 661 QRNETDKAEKLREEMIARGL 680


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 151/321 (47%), Gaps = 8/321 (2%)

Query: 166 ILYNV-TMKVFRKC----RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           I YNV T+ +   C      +D    +F   L RG KPD V F+TLI           A 
Sbjct: 71  IKYNVCTLSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAA 130

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
              + M   GC PD +T +S++  Y   G ++    ++    ++  + D  ++S  I  Y
Sbjct: 131 GLLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGY 190

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
                 D  + +++EM   GV PN +TYN L+  + +A RP   + ++++M   GLSP+ 
Sbjct: 191 CKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDI 250

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFE 399
             Y++LL  + +    ++ L +++EM+ + ++  + +Y  ++  MC      D A E+  
Sbjct: 251 LAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKD-AKEVLS 309

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
            +   E  +PD  T+++++      G + EA  +F +M E G  P       L+Q   + 
Sbjct: 310 RL-IVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQH 368

Query: 460 QRTDDVVRALNRLPELGITPD 480
             T  VV+ ++ + + G   D
Sbjct: 369 NDTSTVVQLIHEMADRGFYAD 389



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 162/346 (46%), Gaps = 9/346 (2%)

Query: 151 ALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL  F   L  + +  +I +N  +    + +  +    LF +M  RG+K +  T S LI+
Sbjct: 24  ALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILIN 83

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           C    +  +     F +    G  PD + ++++ID   R G  E+A GL           
Sbjct: 84  CFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVP 143

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D    ++L++ Y + G  D    ++  M + G+KP++ +Y+  ++   + ++  +   ++
Sbjct: 144 DVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELF 203

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            EM+  G+ PN  TY +L++A  +A    D   ++R+M   G+   +  Y+TLL      
Sbjct: 204 DEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQ 263

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           G  DE   +F++M+     +PD   ++ +I  +C  R KV +A+ + + ++  G +P++ 
Sbjct: 264 GNLDEMLVLFQEMQ-RRLVKPDLVVYTIIINGMCRSR-KVKDAKEVLSRLIVEGLKPDVH 321

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
             T+L+    +     + +R   ++ E G  P      C  NV+ Q
Sbjct: 322 TYTALVDGLCREGSIIEALRLFRKMEEDGCMPGS----CSYNVLLQ 363



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 141/302 (46%), Gaps = 3/302 (0%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           +LD A   F+ MLDR  +P  + F+ L+S           V  F+ M   G   +  T S
Sbjct: 20  NLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLS 79

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
            +I+ +    +V+  F ++ +     ++ D   F+TLI      G  +    + +EM  +
Sbjct: 80  ILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLV 139

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G  P+++T N+L+       +  +V+ I+  M   GL P+  +Y+  +  Y +    ++ 
Sbjct: 140 GCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEA 199

Query: 360 LSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
           + ++ EM  +G+  +   YNTL+ A+C  +   D A  +F  M +     PD   +S+++
Sbjct: 200 MELFDEMSHRGVVPNAVTYNTLIKALCQALRPRD-AQVLFRKMCAC-GLSPDILAYSTLL 257

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                +G + E   +F EM     +P+L V T +I    ++++  D    L+RL   G+ 
Sbjct: 258 DGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLK 317

Query: 479 PD 480
           PD
Sbjct: 318 PD 319



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 35/238 (14%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y++ +  + K   +D+A  LFD+M  RGV P+ VT++TLI        P  A   F
Sbjct: 179 DVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLF 238

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M + G  PD L YS+++D + + GN+                                
Sbjct: 239 RKMCACGLSPDILAYSTLLDGFCKQGNL-------------------------------- 266

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              D  L +++EM+   VKP+++ Y  +++ M R+++    K +   +   GL P+ +TY
Sbjct: 267 ---DEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTY 323

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            +L+    R     + L ++R+M+E G       YN LL  C     T    ++  +M
Sbjct: 324 TALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEM 381


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 158/326 (48%), Gaps = 3/326 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST-LISCARMNNLPNKAVEWF 223
           V  YN  +    K     +A+ + D+ML  G+ PD  T++  L+ C R +N+ + A   F
Sbjct: 167 VFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMD-AERIF 225

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + MPS G  PD +++S++I    + G ++ A   +   +N     D   ++ LI  +   
Sbjct: 226 DEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRN 285

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     L V +EM   G   +++TYN +L+ + + K   +   ++ EMT+ G+ P++ T+
Sbjct: 286 GVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTF 345

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+  Y +       ++++  M ++ ++  V  YNTL+         ++  E++ DM  
Sbjct: 346 TTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM-I 404

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S    P+  ++  +I      G VSEA  +++EM+E GFE  +    ++++ Y +A    
Sbjct: 405 SRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAV 464

Query: 464 DVVRALNRLPELGITPDDRFCGCLLN 489
                L+ +   GI PD      L+N
Sbjct: 465 KADEFLSNMLLKGIVPDGITYNTLIN 490



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 169/396 (42%), Gaps = 71/396 (17%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K+  S +   YN+ +    +  ++  AER+FD+M  +GV PD V+FS LI     N   +
Sbjct: 195 KIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 254

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID-------- 269
           +A+++F  M + G  PD + Y+ +I  + R G +  A  + D    +   +D        
Sbjct: 255 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTIL 314

Query: 270 -------------------------PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
                                    P+   F+TLI  Y   GN +  + ++E M    +K
Sbjct: 315 NGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLK 374

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P+++TYN L+D   +     +V  ++ +M    + PN  +Y  L+  Y       +   +
Sbjct: 375 PDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRL 434

Query: 363 YREMKEKGMQLSVTLYNTLL--------AMCAD---------------VGYT-------- 391
           + EM EKG + ++   NT++        A+ AD               + Y         
Sbjct: 435 WDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIK 494

Query: 392 ----DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
               D AF +   M++S    PD  T++ ++   S +G++ EAE +  +M+E G  P+  
Sbjct: 495 EENMDRAFALVNKMENS-GLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRS 553

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
             TSLI  +       +  R  + + + G  PDD+F
Sbjct: 554 TYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDDKF 589



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/425 (23%), Positives = 185/425 (43%), Gaps = 26/425 (6%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCL 126
           +G  GS+P  +  +     +A KL+E                   C A     F VL+  
Sbjct: 20  YGNCGSNPLVFDLLVRTYVQARKLRE------------------GCEA-----FRVLKSK 56

Query: 127 GDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD--LDKA 184
           G       C  +L  +       LA   +   +++  +V +Y + + +   C++  ++  
Sbjct: 57  GLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENT 116

Query: 185 ERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244
           +    DM ++GV PD VT++TLI+      L  +A E  + M   G  P   TY+++I+ 
Sbjct: 117 KSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIING 176

Query: 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
             + G    A G+ D         D   ++ L+       N      +++EM + GV P+
Sbjct: 177 LCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPD 236

Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
           +++++ L+  + +     Q    +++M + GL+P+   Y  L+  + R     + L V  
Sbjct: 237 LVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRD 296

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
           EM E+G  L V  YNT+L          EA E+F +M +     PD +TF+++I   S  
Sbjct: 297 EMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEM-TERGVFPDFYTFTTLINGYSKD 355

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
           G +++A  +F  M++   +P++    +LI  + K    + V    N +    I P+    
Sbjct: 356 GNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISY 415

Query: 485 GCLLN 489
           G L+N
Sbjct: 416 GILIN 420



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 91/427 (21%), Positives = 175/427 (40%), Gaps = 42/427 (9%)

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
           C  + L +  ++  Y +A  +      +   +++   +  NA ++L+      G  D   
Sbjct: 23  CGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAW 82

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            +Y+E+   GV+ N+ T N +++ + + ++    K+   +M + G+ P+  TY +L+ AY
Sbjct: 83  EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAY 142

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
            R    E+   +   M  KG++  V  YN ++      G    A  + ++M       PD
Sbjct: 143 CRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI-GMSPD 201

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
           + T++ ++  C     + +AE +F+EM   G  P+L   ++LI    K    D  ++   
Sbjct: 202 TATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFR 261

Query: 471 RLPELGITPDDRFCGCLL------NVMTQTPKE-----ELGKLVECVEKSNSKLGYVVKL 519
            +   G+ PD+     L+       VM++  K      E G +++ V  +    G   + 
Sbjct: 262 DMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEK 321

Query: 520 LLEEQDIEGDFKKEATE------------LFNSISKDVKKAYCNCLIDLCVNLN------ 561
           +L E D   +   E TE            L N  SKD        L ++ +  N      
Sbjct: 322 MLSEAD---ELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVV 378

Query: 562 ----LLENACKLLELGLTLEVYTDIQSRS--PTQWSLHL---KSLSLGAALTALHIWIND 612
               L++  CK  E+    E++ D+ SR   P   S  +      ++G    A  +W   
Sbjct: 379 TYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEM 438

Query: 613 LSKALES 619
           + K  E+
Sbjct: 439 VEKGFEA 445


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 148/316 (46%), Gaps = 1/316 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y+  +  F     L++A  LF  M+ R V P+ VTF+ L+       +  +A   FE
Sbjct: 246 VVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFE 305

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G +PDA TYS+++D Y     ++ A  L+D    + +      ++ LI  +  + 
Sbjct: 306 MMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSR 365

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +    +  EM    + P+ +TY+ L+    +A RP   + ++KEM   GL P+  TY+
Sbjct: 366 RLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYS 425

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            LL    +  + ++   + + M+E  ++  + +YN L+    + G  + A E+F ++   
Sbjct: 426 ILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNL-FV 484

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +  QP   T++ MI+     G  +EA  MF +M+  G  PN       IQ + +     +
Sbjct: 485 KGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSN 544

Query: 465 VVRALNRLPELGITPD 480
            VR +  +   G + D
Sbjct: 545 AVRLIEEMVGRGFSAD 560



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 170/366 (46%), Gaps = 5/366 (1%)

Query: 140 NNMTNPDTAALALTYFTNKL--KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK 197
           +N  N  + A A+  F   L  +    V+++N  +    K +       L   M    ++
Sbjct: 42  SNYNNLHSVADAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIR 101

Query: 198 PDNVTFSTLISCARMNNLPNK--AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           P+  T + LI+C   +N  +   A     +M   G  P  +T+ ++++       +  A 
Sbjct: 102 PNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAV 161

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L+D      +      ++T+IK     G+    L + ++M+  G KP+++ YN ++D++
Sbjct: 162 KLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSL 221

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            + +R  +    + EM D G+ PN  TY+S+L  +       +  S++++M  + +  + 
Sbjct: 222 CKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNT 281

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             +  L+      G   EA  +FE M +    +PD++T+S+++     + ++ EA+ +F+
Sbjct: 282 VTFTILVDGLCKEGMILEARRVFE-MMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFD 340

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
            M+  GF P++ V   LI  + K++R ++    L+ + +  +TPD      L+    Q  
Sbjct: 341 IMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAG 400

Query: 496 KEELGK 501
           + ++ +
Sbjct: 401 RPQVAQ 406



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 146/312 (46%), Gaps = 9/312 (2%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
           A +LFD++   G  P  +T++T+I           A++  ++M   GC PD + Y+++ID
Sbjct: 160 AVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVID 219

Query: 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           +  +      A   +    ++   I PN   +S+++  +   G  +   +++++M    V
Sbjct: 220 SLCKDRRANEAMYFFSEMVDQG--IPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNV 277

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            PN +T+  L+D + +     + + +++ MT+NG+ P+  TY++L+  Y      ++   
Sbjct: 278 MPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQK 337

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           ++  M  KG   SV +YN L+         +EA  +  +M    +  PD+ T+S+++   
Sbjct: 338 LFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYD-RDLTPDTVTYSTLMQGF 396

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
              G+   A+ +F EM   G  P+    + L+    K    D+  R L  + E  I P  
Sbjct: 397 CQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHI 456

Query: 482 RFCGCLLNVMTQ 493
               C+ N++ Q
Sbjct: 457 ----CIYNILIQ 464


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 140/315 (44%), Gaps = 1/315 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+  N  +K   +   +  A  + ++M   GV PD  TF+TL+           A+   
Sbjct: 196 DVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVK 255

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M   GC P  +T + +I+ Y + G VE A G   +   + +  D   ++T +      
Sbjct: 256 AKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQN 315

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+    L V + M   G  P++ TYN +++ + +     + K I  +M D G  P+  T+
Sbjct: 316 GHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTF 375

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ A       E+ L + RE+  KG+   V  +N L+     VG       +FE+MKS
Sbjct: 376 NTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKS 435

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S  C PD  T++ +I      GK+  A  + NEM   G   +     ++I    K  R +
Sbjct: 436 S-GCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIE 494

Query: 464 DVVRALNRLPELGIT 478
           +     +++   GI+
Sbjct: 495 EAEEVFDQMDAQGIS 509



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 147/317 (46%), Gaps = 1/317 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  YN  +    K  +LD+A+ + + M+DRG  PD  TF+TLI      N   +A++  
Sbjct: 336 DVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLA 395

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             +   G  PD  T++ +I+A  + G+  +   L++  ++     D   ++ LI    + 
Sbjct: 396 RELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSM 455

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     L++  EM++ G   + +TYN ++D + +  R  + + ++ +M   G+S +  T+
Sbjct: 456 GKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTF 515

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+    +A+  +D   +  +M ++G+Q +   YN++L      G   +A +I E M +
Sbjct: 516 NTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETM-T 574

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +   + D  T+ ++I      G+   A  +   M   G  P       +IQ   +     
Sbjct: 575 ANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLR 634

Query: 464 DVVRALNRLPELGITPD 480
           D +     + E+G  PD
Sbjct: 635 DALNLFREMTEVGEPPD 651



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 133/286 (46%), Gaps = 6/286 (2%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKA 219
           S +V  +N+ +    K  D     RLF++M   G  PD VT++ LI   C+ M  L N A
Sbjct: 404 SPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCS-MGKLGN-A 461

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           ++    M S GC    +TY+++IDA  +   +E A  ++D+   +        F+TLI  
Sbjct: 462 LDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDG 521

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
              A   D    + E+M   G++PN ITYN++L    +     +   I + MT NG   +
Sbjct: 522 LCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEID 581

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
             TY +L+    +A   +  L + R M+ KG++ +   YN ++          +A  +F 
Sbjct: 582 VVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFR 641

Query: 400 DMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEP 444
           +M       PD+ T+  +  ++C   G + EA     EM+  GF P
Sbjct: 642 EMTEVGE-PPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMP 686



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 147/308 (47%), Gaps = 5/308 (1%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G +PD VT++T +     N   + A++  + M   G DPD  TY+++I+   + G ++ A
Sbjct: 297 GFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEA 356

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
            G+ ++  +     D   F+TLI    +    +  L++  E+   G+ P++ T+N L++ 
Sbjct: 357 KGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINA 416

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           + +   P     +++EM  +G +P+  TY  L+          + L +  EM+  G   S
Sbjct: 417 LCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRS 476

Query: 375 VTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEA 432
              YNT++ A+C  +   +EA E+F+ M  ++     + TF+++I  +C  + ++ +A  
Sbjct: 477 TVTYNTIIDALCKKM-RIEEAEEVFDQM-DAQGISRSAVTFNTLIDGLCKAK-RIDDATE 533

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
           +  +M++ G +PN     S++  Y K          L  +   G   D    G L+N + 
Sbjct: 534 LIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLC 593

Query: 493 QTPKEELG 500
           +  + ++ 
Sbjct: 594 KAGRTQVA 601



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 176/410 (42%), Gaps = 35/410 (8%)

Query: 186 RLFDDMLDRGV-KPDNVTFSTLISCARMNNLPNKAVEW---------FERMPSFGCDPDA 235
           R FDD +D  + + DN TF         N+L N  VE          +  M   G  PD 
Sbjct: 138 RRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDV 197

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           +T +++I A  RA  V  A  + +   +     D   F+TL++ +   G+ +  L V  +
Sbjct: 198 VTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAK 257

Query: 296 MKAIGVKPNMITYNNLLD---TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           M   G  P  +T N L++    MGR +    +  I +E+ D G  P+  TY + +    +
Sbjct: 258 MMEAGCSPTGVTVNVLINGYCKMGRVEDA--LGYIQQEIAD-GFEPDQVTYNTFVHGLCQ 314

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
             +    L V   M ++G    V  YNT++   +  G  DEA  I   M     C PD+ 
Sbjct: 315 NGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQM-VDRGCLPDTT 373

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           TF+++I   S + ++ EA  +  E+   G  P+++    LI    K       +R    +
Sbjct: 374 TFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEM 433

Query: 473 PELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE--------KSNSKLGYVVKLLLEEQ 524
              G TPD+     L++ +    K  LG  ++ +         +S      ++  L ++ 
Sbjct: 434 KSSGCTPDEVTYNILIDHLCSMGK--LGNALDLLNEMESNGCPRSTVTYNTIIDALCKKM 491

Query: 525 DIEGDFKKEATELFNSI-SKDVKKAYC--NCLIDLCVNLNLLENACKLLE 571
            IE     EA E+F+ + ++ + ++    N LID       +++A +L+E
Sbjct: 492 RIE-----EAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIE 536



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 123/285 (43%), Gaps = 18/285 (6%)

Query: 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
           +  + YN  +    K   +++AE +FD M  +G+    VTF+TLI         + A E 
Sbjct: 475 RSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATEL 534

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            E+M   G  P+ +TY+S++  Y + GN++ A  + +      + ID   + TLI     
Sbjct: 535 IEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCK 594

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           AG     L +   M+  G++P    YN ++ ++ R         +++EMT+ G  P+  T
Sbjct: 595 AGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALT 654

Query: 343 YA----SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD---EAF 395
           Y     SL R  G  +   D L    EM  KG     + +  L     ++G  D    A 
Sbjct: 655 YKIVFRSLCRGGGPIKEAFDFLV---EMVNKGFMPEFSSFRMLAEGLLNLGMDDYLISAI 711

Query: 396 E-IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
           E I E  K  E+   D+      + I     K  +A A F  +LE
Sbjct: 712 ELIIEKAKFRES---DASAIRGYLKI----RKYYDALATFGRLLE 749



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 95/188 (50%), Gaps = 5/188 (2%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKA 219
           S+  + +N  +    K + +D A  L + M+  G++P+N+T++++++  C + N    KA
Sbjct: 509 SRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGN--IKKA 566

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
            +  E M + G + D +TY ++I+   +AG  ++A  L    R +  R  P A++ +I+ 
Sbjct: 567 ADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQS 626

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSP 338
                N    LN++ EM  +G  P+ +TY  +  ++ R   P  +      EM + G  P
Sbjct: 627 LFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMP 686

Query: 339 NWNTYASL 346
            ++++  L
Sbjct: 687 EFSSFRML 694



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 77/380 (20%), Positives = 142/380 (37%), Gaps = 86/380 (22%)

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMK---------------------------------- 297
            +  +++  GTAG FD    +  EM+                                  
Sbjct: 91  VYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQ 150

Query: 298 ----AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
                 GV+ + + +N+LL+ +    +   ++++Y EMT  G+ P+  T  +L++A  RA
Sbjct: 151 LDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRA 210

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM------------ 401
                 + +  EM   G+    T + TL+    + G  + A  +   M            
Sbjct: 211 HQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTV 270

Query: 402 ----------------------KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
                                 + ++  +PD  T+++ +      G VS A  + + ML+
Sbjct: 271 NVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQ 330

Query: 440 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPKEE 498
            G +P++F   ++I C  K    D+    +N++ + G  PD   F   ++ + +Q   EE
Sbjct: 331 EGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEE 390

Query: 499 LGKLV-ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYC------- 550
              L  E   K  S   Y   +L+      GD       L   + +++K + C       
Sbjct: 391 ALDLARELTVKGLSPDVYTFNILINALCKVGD-----PHLGIRLFEEMKSSGCTPDEVTY 445

Query: 551 NCLIDLCVNLNLLENACKLL 570
           N LID   ++  L NA  LL
Sbjct: 446 NILIDHLCSMGKLGNALDLL 465



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 70/148 (47%), Gaps = 2/148 (1%)

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
            +P+   Y  +++  G A   +    + REM+ +G Q+   +  + +   A +   D+A 
Sbjct: 85  FAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESYARLRRFDDAV 144

Query: 396 EIFEDMKSSE--NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           ++  +   ++    Q D+  F+ ++ +     K+   E+++NEM   G +P++  L +LI
Sbjct: 145 DLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLI 204

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDD 481
           +   +A +    V  L  +   G+ PD+
Sbjct: 205 KALCRAHQVRTAVLMLEEMSSHGVAPDE 232



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 78/216 (36%), Gaps = 39/216 (18%)

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL-- 360
           P+   Y  ++  +G A     ++ + +EM   G         S + +Y R R  +D +  
Sbjct: 87  PSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESYARLRRFDDAVDL 146

Query: 361 ------------------------------------SVYREMKEKGMQLSVTLYNTLLAM 384
                                               SVY EM  +G+Q  V   NTL+  
Sbjct: 147 VLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKA 206

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
                    A  + E+M SS    PD  TF++++      G +  A  +  +M+EAG  P
Sbjct: 207 LCRAHQVRTAVLMLEEM-SSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSP 265

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               +  LI  Y K  R +D +  + +    G  PD
Sbjct: 266 TGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPD 301



 Score = 40.8 bits (94), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 3/122 (2%)

Query: 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
           LLA   +    + A  +     + E+  P S  +  ++      G     E +  EM   
Sbjct: 59  LLAALREQSDPEAALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRRE 118

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVR-ALNRLPE--LGITPDDRFCGCLLNVMTQTPKE 497
           G +    V+ S ++ Y + +R DD V   LN+L     G+  D      LLNV+ +  K 
Sbjct: 119 GHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKL 178

Query: 498 EL 499
           +L
Sbjct: 179 KL 180


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/463 (23%), Positives = 198/463 (42%), Gaps = 36/463 (7%)

Query: 39  TSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTR 98
           T   KR +S +         +++ P      T ++P S+ +    +P  S+L  K + ++
Sbjct: 7   TQFPKRCLSTRFPSLDPKLNNTKTPFSSPNSTYTTPNSHTF---DTPTISQLIAKQHWSK 63

Query: 99  YNSLVK------LAADLDSCSATEDDVFSVLRCLGDDF-----LEQDCVII--LNNMTNP 145
             ++VK      L   L +  A  D +    +    +F     +EQ C ++  L N  N 
Sbjct: 64  LKTIVKETNPSSLLQHLFNSEAQPDLILCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNY 123

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           +     L  F      S   I +++++     C     A  +  DML             
Sbjct: 124 NKIRALLDSFAKNAHYSNSTIFHSLSVLGSWGC-----ANSIIVDML------------- 165

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
            +     N   + A+E F+R   +G    AL+ + M+ +  + G + +   +Y      +
Sbjct: 166 -VWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRR 224

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
             ++   F  +I      G F    +V E+MKA G  P++ITYN ++D   +A + ++  
Sbjct: 225 IGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKAD 284

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + KEM    + PN  T+  L+  + R         V+ EM+ +G+Q +V  YN+L+   
Sbjct: 285 ALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGL 344

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G  DEA  + +D  S    +P+  T++++I     +  + EA  M +++ + G  PN
Sbjct: 345 CSNGKLDEALGL-QDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPN 403

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           +    +LI  YGKA R DD     + + + G+ P+     CL+
Sbjct: 404 VITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLI 446



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 149/299 (49%), Gaps = 7/299 (2%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
            E ++ +M+ R +  + VTF  +I+         KA +  E M ++G  P  +TY+++ID
Sbjct: 213 VESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIID 272

Query: 244 AYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
            Y +AG +  A  L      +  RI PN   F+ LI  +    N      V+EEM+  G+
Sbjct: 273 GYCKAGKMFKADALLKEMVAK--RIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGL 330

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           +PN++TYN+L++ +    +  +   +  +M+  GL PN  TY +L+  + + +  ++   
Sbjct: 331 QPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEARE 390

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           +  ++ ++G+  +V  +NTL+      G  D+AF +   M  +  C P+  T++ +I + 
Sbjct: 391 MLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVC-PNVSTYNCLI-VG 448

Query: 422 SCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
            CR G V EA  +  EM   G + +L     L+    K   T   VR L+ + E+G+ P
Sbjct: 449 FCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNP 507



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 145/292 (49%), Gaps = 1/292 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ ++V +    K     KA  + +DM   G  P  +T++T+I          KA    +
Sbjct: 229 VVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLK 288

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M +    P+ +T++ +ID + R  NV  A  +++  + +  + +   +++LI    + G
Sbjct: 289 EMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNG 348

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             D  L + ++M  +G+KPN++TYN L++   + K   + + +  ++   GL+PN  T+ 
Sbjct: 349 KLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+ AYG+A   +D   +   M + G+  +V+ YN L+      G   EA ++ ++M+ +
Sbjct: 409 TLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGN 468

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
              + D  T++ ++     +G+  +A  + +EM E G  P+     +LI  Y
Sbjct: 469 -GLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGY 519



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 138/282 (48%), Gaps = 17/282 (6%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +        LD+A  L D M   G+KP+ VT++ LI+      +  +A E  +
Sbjct: 334 VVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLD 393

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            +   G  P+ +T++++IDAYG+AG ++ AF L     +     + + ++ LI  +   G
Sbjct: 394 DIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREG 453

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N      + +EM+  G+K +++TYN L+D + +     +   +  EM + GL+P+  TY 
Sbjct: 454 NVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYN 513

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+  Y R       L+V   M++KG + ++  YN L+    + G  +EA  +  +M   
Sbjct: 514 ALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEM-LE 572

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
           +   P+  T+                + + +EM+E GF P++
Sbjct: 573 KGLIPNRTTY----------------DILRDEMMEKGFIPDI 598



 Score = 39.3 bits (90), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 147 TAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206
           TAAL +     K      ++ YNV +K F     L++A RL ++ML++G+ P+  T+  L
Sbjct: 526 TAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 585


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 156/339 (46%), Gaps = 15/339 (4%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS----CARMNNLPNKA 219
           ++I Y+  +    K   +D+A +L D M+ RG  P  V ++++++    C R+     +A
Sbjct: 232 DIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQ----EA 287

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           V+  + M      P   TYS ++  Y   G VE AF + +   +     D  +++  I+ 
Sbjct: 288 VKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEA 347

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
             + G  +    V+E M   G KP+M TY  ++D   +         + + M    + PN
Sbjct: 348 LYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPN 407

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
              Y  ++  + ++   E+ L +Y+ + + G+  S   YNT++     +   DEA E+  
Sbjct: 408 RYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLR 467

Query: 400 DM-KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN---EMLEAGFEPNLFVLTSLIQC 455
           +M +  E  +P   T+S +I      GKV   E  F+   EM++ G  P+ F  TSLIQ 
Sbjct: 468 EMQRRKEELEPSIVTYSMII---HGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQT 524

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
              A +    +  L  + + GI PDD   G L+ ++ ++
Sbjct: 525 LAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRS 563



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 158/348 (45%), Gaps = 6/348 (1%)

Query: 151 ALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-- 208
           AL +F + + +   V  +N+ ++ F    D +    L  +M  RG+  +  T   ++S  
Sbjct: 115 ALGFFQSSI-SEPNVSSFNILLRGFAARDDFEVVNALLREMKSRGITSNGATHGVILSAL 173

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
           CAR +   +KAV +F  +    C+P   TY+ ++D   +A  VE A  +++    + ++ 
Sbjct: 174 CARRD--LDKAVSYFNSVSPNKCEPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKP 231

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D  A+S+LI     AG  D    + + M A G  P  + Y +++  + +  R  +     
Sbjct: 232 DIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTI 291

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           +EM    L P  +TY+ ++  Y      E   +V  EM ++        Y   +     +
Sbjct: 292 QEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSI 351

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G  +EA ++FE M   + C+PD  T+  +I      G ++ A  +   M +A  +PN ++
Sbjct: 352 GRREEAEKVFETM-VEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYI 410

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
            T ++  + K+ R ++ +    R+ + GI P       ++N + +  K
Sbjct: 411 YTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKK 458



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 128/276 (46%), Gaps = 8/276 (2%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           ++KA  + ++M DR   PD ++++  I          +A + FE M   GC PD  TY  
Sbjct: 319 VEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGI 378

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           +ID + + G+  MA   +     +K  + PN   ++ ++  +  +   +  L +Y+ +  
Sbjct: 379 IIDNFCKEGS--MAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILK 436

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYG 356
            G+ P+ +TYN +++ + + K+  +   + +EM      L P+  TY+ ++   G+    
Sbjct: 437 DGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGME 496

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           E    +  EM + G+      Y +L+   A  G    A E+ E+M  +    PD  T+ +
Sbjct: 497 ERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKA-GIFPDDHTYGT 555

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           ++ I  CR  V  A  +  EM+  G  PN F   ++
Sbjct: 556 LVQIL-CRSDVDAAWDLLQEMMRNGHTPNEFTFKAV 590



 Score = 42.4 bits (98), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 5/111 (4%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ Y++ +    K    ++A  L  +M+D GV PD  T+++LI         ++A+E  E
Sbjct: 480 IVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLE 539

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY-DRARNEKWRIDPNAFS 274
            M   G  PD  TY +++    R+ +V+ A+ L  +  RN      PN F+
Sbjct: 540 EMLKAGIFPDDHTYGTLVQILCRS-DVDAAWDLLQEMMRNGH---TPNEFT 586


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 146/326 (44%), Gaps = 6/326 (1%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR-----GVKPDNVTFSTLISCARMNN 214
           + S  VI YN  +    K   +D+   LFDDM  R     G +PD +++ST+I       
Sbjct: 63  ECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQ 122

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
             +KA E+F+RM + GC P+ +TYSS+ID   +   V+ A+ L  + + E        ++
Sbjct: 123 RVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYN 182

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
            ++  +   G    CL +   MK  G   N+I +N +L  + +     +    ++ +  +
Sbjct: 183 AVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKS 242

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
           G  PN  TY   +    +A   ++   +  EM E  +   V  Y++++      G  D+A
Sbjct: 243 GKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKA 302

Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
            ++F  M   E C P   TF +++   S   K  EA  +  +M+ AGF P L     L+ 
Sbjct: 303 DDVFTRMMVHE-CIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMD 361

Query: 455 CYGKAQRTDDVVRALNRLPELGITPD 480
           C   A   +  +   +++      PD
Sbjct: 362 CVCGADSVESALEIYHKMKRKKRQPD 387



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 149/311 (47%), Gaps = 7/311 (2%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +Y   +  F K   +D+A  L D+M +RGVK D +  STLI         ++A+E F+ M
Sbjct: 1   MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR-----NEKWRIDPNAFSTLIKLYG 281
               C P+ +TY+++++   +A  ++    L+D        +     D  ++ST+I    
Sbjct: 61  GE-ECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALC 119

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A   D     ++ M+A+G  PN++TY++L+D + +  R  +  ++  ++    + P   
Sbjct: 120 KAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAM 179

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
            Y +++  + R     + L +   MKEKG  +++  +N +L         ++A + FE +
Sbjct: 180 YYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERL 239

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
             S   +P+  T++  +      GKV EA  +  EM+E+   P++   +S+I  + KA R
Sbjct: 240 LKSGK-KPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGR 298

Query: 462 TDDVVRALNRL 472
            D       R+
Sbjct: 299 MDKADDVFTRM 309



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 139/335 (41%), Gaps = 22/335 (6%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +I +N  +    K  + +KA + F+ +L  G KP+ VT++  +         ++A     
Sbjct: 213 IIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILL 272

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M      PD +TYSS+ID + +AG ++ A  ++ R    +    P  F TL+  +    
Sbjct: 273 EMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHK 332

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  V+E+M   G  P + TYN L+D +  A        IY +M      P+ NTYA
Sbjct: 333 KSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYA 392

Query: 345 SLLRAYGRARYGEDTLSVYREM--------------------KEKGMQLSVTLYNTLLAM 384
            L++   RAR  ++       M                    K+  +  + ++ + ++ +
Sbjct: 393 PLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEI 452

Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
           C   G  DEA E+ E M   +  +PD  T+ +++       +V  A A F +M   G  P
Sbjct: 453 CK-AGEPDEAVEVIEQM-VLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAP 510

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
            L   T LI     A   DD  R    +   G TP
Sbjct: 511 GLVTYTLLIGEACSADMADDAFRIFEAMVAAGFTP 545



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 153/362 (42%), Gaps = 24/362 (6%)

Query: 138 ILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           +L+ +   D    A  +F   LK+ K+  V+ YNV +    K   +D+A R+  +M++  
Sbjct: 219 MLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESK 278

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           V PD +T+S++I         +KA + F RM    C P  +T+ +++  +        AF
Sbjct: 279 VTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAF 338

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            +++   N  +      ++ L+     A + +  L +Y +MK    +P+  TY  L+  +
Sbjct: 339 RVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCL 398

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR-----------------ARYGE- 357
            RA+R  + K     M  + + PN     +L+    +                  + GE 
Sbjct: 399 CRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEP 458

Query: 358 -DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            + + V  +M  KG++     Y  +L     +   D A   FE M +S  C P   T++ 
Sbjct: 459 DEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKM-ASRGCAPGLVTYTL 517

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I          +A  +F  M+ AGF P    + +L  C   A   D +VR   R+  + 
Sbjct: 518 LIGEACSADMADDAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAGYQDLLVR--QRIMTMA 575

Query: 477 IT 478
           I+
Sbjct: 576 IS 577



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 7/143 (4%)

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +++  + +A   +    +  EMKE+G+++ V L++TL+      G  DEA E F+ M 
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM- 60

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM---LEA--GFEPNLFVLTSLIQCYG 457
             E C P+  T+++++       ++ E   +F++M    EA  G EP++   +++I    
Sbjct: 61  -GEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALC 119

Query: 458 KAQRTDDVVRALNRLPELGITPD 480
           KAQR D       R+  +G  P+
Sbjct: 120 KAQRVDKAYEYFKRMRAVGCAPN 142


>gi|297724885|ref|NP_001174806.1| Os06g0499301 [Oryza sativa Japonica Group]
 gi|52076487|dbj|BAD45366.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|125597333|gb|EAZ37113.1| hypothetical protein OsJ_21452 [Oryza sativa Japonica Group]
 gi|255677074|dbj|BAH93534.1| Os06g0499301 [Oryza sativa Japonica Group]
          Length = 642

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 171/384 (44%), Gaps = 10/384 (2%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D  AL      + + A++    +N  ++   +  D+  A +LF  M  +G  P   T++ 
Sbjct: 227 DAVALVHEMVADGVVAAEA---FNPVLRAMLRAGDVKGAAKLFGFMQLKGCVPTTATYNV 283

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           L+    +      A+    RM   G  P  +TY +++D   R G V+ A+ + +      
Sbjct: 284 LVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNG 343

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
              +   +ST+I  +  +G  D  L V+E M A  V+PN++ Y+ ++  +    +  + +
Sbjct: 344 LAWNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAE 403

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            +++EM  +  +PN  TY S+++ Y +       LSV+ EM   G   +   Y+ L+   
Sbjct: 404 LLFREMIHSKCAPNIITYGSIIQGYFKIGDTSRALSVWEEMIGAGCVPNAVSYSILINGL 463

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EP 444
            +VG   +A  +++ M     C PD+  ++SMI      G V     +F +ML +G  +P
Sbjct: 464 CNVGRLKDAMMVWKHML-DRGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADP 522

Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL---NVMTQTPKEELGK 501
           ++     L+     A+     +  LNR+ + G  PD   C   L       +  +E L  
Sbjct: 523 DVISYNVLLDGLLLAKDLPRAMDLLNRMLDQGCDPDTVTCNIFLREFGAGERKGREFLEG 582

Query: 502 LVE--CVEKSNSKLGYVVKLLLEE 523
           LV   C  + N   G V+ ++L +
Sbjct: 583 LVVRLCDRRRNMAAGEVLMVMLAK 606



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 134/302 (44%), Gaps = 10/302 (3%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWF--------ERMPSFGCDPDALTYSSMIDAYGR 247
           + P  ++F+ L+ C   + +P     +         E +P +   PD  TYS+++ A   
Sbjct: 162 LAPTLLSFNLLLKCVCSSLVPRDPGRYLDVALRILHEIIPGWDLAPDKFTYSTVVSALAD 221

Query: 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307
           AG V+ A  L      +   +   AF+ +++    AG+  G   ++  M+  G  P   T
Sbjct: 222 AGRVDDAVALVHEMVADG-VVAAEAFNPVLRAMLRAGDVKGAAKLFGFMQLKGCVPTTAT 280

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           YN L+  +    R      + + M   G+ P   TY +++    R    +D   V  EM+
Sbjct: 281 YNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEME 340

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
             G+  +  +Y+T++      G  D A +++E M +S   +P+   +S+MI   +  GK+
Sbjct: 341 RNGLAWNEFVYSTVITGFCKSGEIDCALKVWEAMVASP-VRPNVVLYSAMIGGLANFGKM 399

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
           +EAE +F EM+ +   PN+    S+IQ Y K   T   +     +   G  P+      L
Sbjct: 400 TEAELLFREMIHSKCAPNIITYGSIIQGYFKIGDTSRALSVWEEMIGAGCVPNAVSYSIL 459

Query: 488 LN 489
           +N
Sbjct: 460 IN 461


>gi|357125122|ref|XP_003564244.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Brachypodium distachyon]
          Length = 502

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 146/313 (46%), Gaps = 9/313 (2%)

Query: 182 DKAERLFDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           + A ++F+ M D+   +P    +  LI+       P KA E F+ M   GC P+  +Y++
Sbjct: 132 ESALKVFELMRDQVWYRPYVGIYIKLITMLGKCKQPGKAHELFQAMVDEGCAPNLESYTA 191

Query: 241 MIDAYGRAGNVEMAFGLYDRAR-NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           ++ AY R+G+ + AF L DR +     R D   +S LIK    A +FD   ++  +M   
Sbjct: 192 LVSAYSRSGSFDRAFSLLDRMKATPGCRPDVQTYSILIKSCLHAYDFDKVKDLLADMACG 251

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G++PN +TYN L+D  G+A R  ++++   EM      P+  T  S LRA+G +   E  
Sbjct: 252 GIRPNTVTYNTLVDAYGKAGRFAEMESTLLEMLSEKCKPDVWTMNSTLRAFGSSGQIEMM 311

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
            S Y + +  G+  ++  YN LL         ++   + E M+        SWT  +   
Sbjct: 312 ESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYY----SWTIVTYNV 367

Query: 420 ICSCRGKVSEAEAM---FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +    G+  + E M   F  M     +PN   L SLI+ YG+A +   +   L  +    
Sbjct: 368 VIDAFGRAGDLEQMEYIFRLMKSDRIKPNCVTLCSLIRAYGRADQVKKIETVLRIIENSD 427

Query: 477 ITPDDRFCGCLLN 489
            T D  F  CL++
Sbjct: 428 TTLDIVFFNCLVD 440



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 128/261 (49%), Gaps = 13/261 (4%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI----SCARMNNLPNKA 219
           +V  Y++ +K      D DK + L  DM   G++P+ VT++TL+       R   + +  
Sbjct: 221 DVQTYSILIKSCLHAYDFDKVKDLLADMACGGIRPNTVTYNTLVDAYGKAGRFAEMESTL 280

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLI 277
           +E    M S  C PD  T +S + A+G +G +EM    Y++ +     I PN   ++ L+
Sbjct: 281 LE----MLSEKCKPDVWTMNSTLRAFGSSGQIEMMESCYEKFQASG--ISPNIKTYNILL 334

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             YG A  ++    V E M+       ++TYN ++D  GRA    Q++ I++ M  + + 
Sbjct: 335 DSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSDRIK 394

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           PN  T  SL+RAYGRA   +   +V R ++     L +  +N L+     VG   E +++
Sbjct: 395 PNCVTLCSLIRAYGRADQVKKIETVLRIIENSDTTLDIVFFNCLVDAYGRVGCLAEMWDV 454

Query: 398 FEDMKSSENCQPDSWTFSSMI 418
              MK  E   PD  T ++MI
Sbjct: 455 LNMMK-LERVSPDKVTCTTMI 474



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 149/326 (45%), Gaps = 2/326 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V +Y   + +  KC+   KA  LF  M+D G  P+  +++ L+S    +   ++A    +
Sbjct: 151 VGIYIKLITMLGKCKQPGKAHELFQAMVDEGCAPNLESYTALVSAYSRSGSFDRAFSLLD 210

Query: 225 RMPSF-GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           RM +  GC PD  TYS +I +   A + +    L         R +   ++TL+  YG A
Sbjct: 211 RMKATPGCRPDVQTYSILIKSCLHAYDFDKVKDLLADMACGGIRPNTVTYNTLVDAYGKA 270

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G F    +   EM +   KP++ T N+ L   G + +   +++ Y++   +G+SPN  TY
Sbjct: 271 GRFAEMESTLLEMLSEKCKPDVWTMNSTLRAFGSSGQIEMMESCYEKFQASGISPNIKTY 330

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             LL +YG+A+  E   +V   M++     ++  YN ++      G  ++   IF  MK 
Sbjct: 331 NILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMK- 389

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S+  +P+  T  S+I       +V + E +   +  +    ++     L+  YG+     
Sbjct: 390 SDRIKPNCVTLCSLIRAYGRADQVKKIETVLRIIENSDTTLDIVFFNCLVDAYGRVGCLA 449

Query: 464 DVVRALNRLPELGITPDDRFCGCLLN 489
           ++   LN +    ++PD   C  ++ 
Sbjct: 450 EMWDVLNMMKLERVSPDKVTCTTMIK 475



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 87/193 (45%), Gaps = 4/193 (2%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K   +V   N T++ F     ++  E  ++     G+ P+  T++ L+       +  K 
Sbjct: 287 KCKPDVWTMNSTLRAFGSSGQIEMMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKM 346

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLI 277
               E M  +      +TY+ +IDA+GRAG++E    ++   +++  RI PN  +  +LI
Sbjct: 347 GAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSD--RIKPNCVTLCSLI 404

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           + YG A        V   ++      +++ +N L+D  GR     ++  +   M    +S
Sbjct: 405 RAYGRADQVKKIETVLRIIENSDTTLDIVFFNCLVDAYGRVGCLAEMWDVLNMMKLERVS 464

Query: 338 PNWNTYASLLRAY 350
           P+  T  ++++ +
Sbjct: 465 PDKVTCTTMIKWF 477



 Score = 46.6 bits (109), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 66/147 (44%)

Query: 151 ALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA 210
           A+  +  K   S  ++ YNV +  F +  DL++ E +F  M    +KP+ VT  +LI   
Sbjct: 348 AVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSDRIKPNCVTLCSLIRAY 407

Query: 211 RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP 270
              +   K       + +     D + ++ ++DAYGR G +   + + +  + E+   D 
Sbjct: 408 GRADQVKKIETVLRIIENSDTTLDIVFFNCLVDAYGRVGCLAEMWDVLNMMKLERVSPDK 467

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMK 297
              +T+IK +   G  D  +    ++K
Sbjct: 468 VTCTTMIKWFLVKGIDDHRVQHLRDLK 494


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 205/433 (47%), Gaps = 21/433 (4%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +KA  LF++M   G KPD+VT +T+IS CAR+ +L  +  E    +   G   D    S+
Sbjct: 381 EKALELFEEMKVSGFKPDSVTLTTVISSCARLLDL-ERGKEIHMELVRSGFALDGFVSSA 439

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           ++D YG+ G +EMA  ++++ +    R +  +++++I  Y   G+   C+ ++  M   G
Sbjct: 440 LVDMYGKCGCLEMAKEVFEQIQ----RKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEG 495

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           ++P + T +++L    R+      K I+  +  N +  +    +SL+  Y +        
Sbjct: 496 IRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAE 555

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
           +V++ M +     +V  +N +++    VG   EA  IF DM+ +   +PD+ TF+S++  
Sbjct: 556 NVFQNMPKT----NVVSWNVMISGYVKVGSYLEALVIFTDMRKA-GVKPDAITFTSVLPA 610

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           CS    + + + + N ++E+  E N  V+ +L+  Y K    D+ +   N+LPE      
Sbjct: 611 CSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFV-- 668

Query: 481 DRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS 540
             +   +    +     E  KL E +++S++K   V  L +           E    FN 
Sbjct: 669 -SWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQ 727

Query: 541 ISKD--VKKA--YCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHL-K 595
           +  +   K A  + +CLIDL   +  L  A ++L+   T ++  D+   S    + HL K
Sbjct: 728 MIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQ--RTPDIREDVGLLSTLFSACHLHK 785

Query: 596 SLSLGAALTALHI 608
            L LG  +  L I
Sbjct: 786 KLDLGEQIGRLLI 798



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 155/373 (41%), Gaps = 50/373 (13%)

Query: 147 TAALALTYFTNKLKASKEVIL---YNVTM-----KVFRKCRDLDKAERLFDDMLDRGVKP 198
           TA  AL     KL   K V L    N+T+      ++  C     A+ +F  + +    P
Sbjct: 204 TAGSALEELLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIEN----P 259

Query: 199 DNVTF-STLISCARMNNLPNKAVEWFERMPSFG-CDPDALTYSSMIDA---YGRAGNVEM 253
            ++T  + L++    N +  + +E F R+  F    PDA TY S++ A    GR G  +M
Sbjct: 260 LDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKM 319

Query: 254 -------------------AFGLYDRAR---------NEKWRIDPNAFSTLIKLYGTAGN 285
                              A G+Y +           +E    D  +++ +I  Y   G 
Sbjct: 320 VHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQ 379

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  L ++EEMK  G KP+ +T   ++ +  R     + K I+ E+  +G + +    ++
Sbjct: 380 PEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSA 439

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  YG+    E    V+ +++ K    +V  +N+++A  +  G +    E+F  M   E
Sbjct: 440 LVDMYGKCGCLEMAKEVFEQIQRK----NVVSWNSMIAGYSLKGDSKSCIELFRRM-DEE 494

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
             +P   T SS++  CS    +   + +   ++    E ++FV +SLI  Y K       
Sbjct: 495 GIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSA 554

Query: 466 VRALNRLPELGIT 478
                 +P+  + 
Sbjct: 555 ENVFQNMPKTNVV 567



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 7/203 (3%)

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLD--TMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            D  LN Y E +  G+   ++  N  L   T G A      K I++++   GL  N    
Sbjct: 176 IDNELNHYTEGE--GIWYRVLARNRCLARVTAGSALEELLGKLIHQKIVSLGLQNNITLC 233

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            SL+  Y      +    V++ ++     L +TL+N L+A C       E  E+F  +  
Sbjct: 234 KSLINLYFSCHLFQSAKLVFQTIENP---LDITLWNGLMAACTKNFIFIEGLEVFHRLLH 290

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               +PD++T+ S++  CS  G+V   + +   ++++GF  ++ V++S +  Y K    +
Sbjct: 291 FPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFE 350

Query: 464 DVVRALNRLPELGITPDDRFCGC 486
           D ++  + +PE  +   +    C
Sbjct: 351 DAIKLFDEMPERDVASWNNVISC 373


>gi|167998422|ref|XP_001751917.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162697015|gb|EDQ83352.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1216

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 151/319 (47%), Gaps = 5/319 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL   +  ++L   K +  +N+ + V    +D   A R+ D +   G++ D + ++TLIS
Sbjct: 573 ALKEAFKFSRLVRRKSLRNFNMLLSVCAHAQDASSACRVLDMVKMAGLQADCIFYTTLIS 632

Query: 209 -CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
            CA+ + + +   ++F  M   G + +  T+ +MID   RAG+V  AFG+Y +  N++  
Sbjct: 633 ACAKASRI-DLMFKFFNEMEIQGIEANVQTFGAMIDGCARAGDVPKAFGIYKKMLNQEVE 691

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKRPWQVK 325
            D   F+TLI   G AG F     V  +M+     +  + ITY  L+    RA    +  
Sbjct: 692 PDRVIFNTLITACGRAGAFLRAFEVLADMRDAPQPIALDHITYGALIAACSRAGEVERAL 751

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            +YK M  + +S     Y + + A     Y    LS+Y +M+E G+Q     +  ++ + 
Sbjct: 752 EVYKRMRSSKVSGTTECYTAAVHACSHKGYLNIALSIYDDMREDGVQPDEVFFCAMMDVA 811

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G  D AF I ++MK+    +P   T+++++  CS       A  ++ E+   G  P 
Sbjct: 812 GHAGKIDVAFAILQEMKNI-GTKPSPVTYNTLMVACSKVDDAENAMRVYEEIKALGLRPI 870

Query: 446 LFVLTSLIQCYGKAQRTDD 464
           LF+L    Q +  A R  D
Sbjct: 871 LFLLGLSSQRWSGAGRELD 889


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/463 (23%), Positives = 198/463 (42%), Gaps = 36/463 (7%)

Query: 39  TSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTR 98
           T   KR +S +         +++ P      T ++P S+ +    +P  S+L  K + ++
Sbjct: 7   TQFPKRCLSTRFPSLDPKLNNTKTPFSSPNSTYTTPNSHTF---DTPTISQLIAKQHWSK 63

Query: 99  YNSLVK------LAADLDSCSATEDDVFSVLRCLGDDF-----LEQDCVII--LNNMTNP 145
             ++VK      L   L +  A  D +    +    +F     +EQ C ++  L N  N 
Sbjct: 64  LKTIVKETNPSSLLQHLFNSEAQPDLILCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNY 123

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           +     L  F      S   I +++++     C     A  +  DML             
Sbjct: 124 NKIRALLDSFAKNAHYSNSTIFHSLSVLGSWGC-----ANSIIVDML------------- 165

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
            +     N   + A+E F+R   +G    AL+ + M+ +  + G + +   +Y      +
Sbjct: 166 -VWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRR 224

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
             ++   F  +I      G F    +V E+MKA G  P++ITYN ++D   +A + ++  
Sbjct: 225 IGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKAD 284

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + KEM    + PN  T+  L+  + R         V+ EM+ +G+Q +V  YN+L+   
Sbjct: 285 ALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGL 344

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G  DEA  + +D  S    +P+  T++++I     +  + EA  M +++ + G  PN
Sbjct: 345 CSNGKLDEALGL-QDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPN 403

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           +    +LI  YGKA R DD     + + + G+ P+     CL+
Sbjct: 404 VITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLI 446



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 150/321 (46%), Gaps = 18/321 (5%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  VI YN  +  + K   + KA+ L  +M+ + + P+ +TF+ LI     +     A +
Sbjct: 261 SPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKK 320

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            FE M   G  P+ +TY+S+I+     G ++ A GL D+      + +   ++ LI  + 
Sbjct: 321 VFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFC 380

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                     + +++   G+ PN+IT+N L+D  G+A R      +   M D G+ PN +
Sbjct: 381 KKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVS 440

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY  L+  + R    ++   + +EM+  G++  +  YN L+      G T +A  + ++M
Sbjct: 441 TYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEM 500

Query: 402 KSSE--NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
              E    + +  T++ +I     +GK+ EA  + NEMLE G  PN              
Sbjct: 501 TLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPN-------------- 546

Query: 460 QRTDDVVRALNRLPELGITPD 480
           + T D++R  + + E G  PD
Sbjct: 547 RTTYDILR--DEMMEKGFIPD 565



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 144/292 (49%), Gaps = 7/292 (2%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
            E ++ +M+ R +  + VTF  +I+         KA +  E M ++G  P  +TY+++ID
Sbjct: 213 VESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIID 272

Query: 244 AYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
            Y +AG +  A  L      +  RI PN   F+ LI  +    N      V+EEM+  G+
Sbjct: 273 GYCKAGKMFKADALLKEMVAK--RIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGL 330

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           +PN++TYN+L++ +    +  +   +  +M+  GL PN  TY +L+  + + +  ++   
Sbjct: 331 QPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEARE 390

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           +  ++ ++G+  +V  +NTL+      G  D+AF +   M  +  C P+  T++ +I + 
Sbjct: 391 MLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVC-PNVSTYNCLI-VG 448

Query: 422 SCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
            CR G V EA  +  EM   G + +L     L+    K   T   VR L+ +
Sbjct: 449 FCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEM 500



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 3/201 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L    + +     V+ YN  +  F K + L +A  + DD+  RG+ P+ +TF+TLI 
Sbjct: 353 ALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLID 412

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   + A      M   G  P+  TY+ +I  + R GNV+ A  L         + 
Sbjct: 413 AYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKA 472

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI---GVKPNMITYNNLLDTMGRAKRPWQVK 325
           D   ++ L+      G     + + +EM  +   G + N++TYN L+       +  +  
Sbjct: 473 DLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEAN 532

Query: 326 TIYKEMTDNGLSPNWNTYASL 346
            +  EM + GL PN  TY  L
Sbjct: 533 RLLNEMLEKGLIPNRTTYDIL 553


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 167/365 (45%), Gaps = 24/365 (6%)

Query: 112 CSATE-DDVFSVLR-CLGDDFLEQDCVI--ILNNMTNPDTAALALTYFTNKLKAS--KEV 165
           CSA + +  FSV+R  +G  F+        +L  + N     LA   F    +     +V
Sbjct: 459 CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADV 518

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
             Y + +  F K   +++A + F++M + G  P+ VT++ LI         + A E FE 
Sbjct: 519 YTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 578

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE----------KWRIDPNAFST 275
           M S GC P+ +TYS++ID + +AG +E A  +++R              K   D N+   
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERP 638

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAI-------GVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
            + +YG   +    L+  EE + +       G +PN I Y+ L+D + +  +  + + + 
Sbjct: 639 NVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 698

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
            EM+++G      TY+SL+  Y + +  +    V  +M E     +V +Y  ++     V
Sbjct: 699 AEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 758

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G TDEA+++ + M   + CQP+  T+++MI      GK+     +   M   G  PN   
Sbjct: 759 GKTDEAYKLMQ-MMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVT 817

Query: 449 LTSLI 453
              LI
Sbjct: 818 YRVLI 822



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 142/320 (44%), Gaps = 18/320 (5%)

Query: 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
           C  L+ AE+ + +ML  GV  + +  S+   C        KA      M   G  PD  T
Sbjct: 426 CHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 485

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           YS ++     A  +E+AF L++  +      D   ++ ++  +  AG  +     + EM+
Sbjct: 486 YSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 545

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
            +G  PN++TY  L+    +AK+      +++ M   G  PN  TY++L+  + +A   E
Sbjct: 546 EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQME 605

Query: 358 DTLSVYREM-----------------KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
               ++  M                  +   + +V +Y  LL     +   +EA ++ + 
Sbjct: 606 KACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDA 665

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           M S E C+P+   + ++I      GK+ EA+ +  EM E GF   L+  +SLI  Y K +
Sbjct: 666 M-SMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVK 724

Query: 461 RTDDVVRALNRLPELGITPD 480
           R D   + L+++ E    P+
Sbjct: 725 RQDLASKVLSKMLENSCAPN 744



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 128/292 (43%), Gaps = 7/292 (2%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y+  +    K   LD+A+ +  +M + G      T+S+LI         + A +   +
Sbjct: 676 IVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSK 735

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M    C P+ + Y+ MID   + G  + A+ L      +  + +   ++ +I  +G  G 
Sbjct: 736 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGK 795

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            + CL + E M + GV PN +TY  L+D   +         + +EM       +W T+A+
Sbjct: 796 IETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQT----HWPTHAA 851

Query: 346 LLRAY--GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             R    G  +   ++L +  E+ +      ++LY  L+         + A  + E++ +
Sbjct: 852 GYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVAT 911

Query: 404 SENCQPD-SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
                 D S T++S+I       KV +A  +F+EM + G  P +    SLI+
Sbjct: 912 FSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIK 963



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/369 (20%), Positives = 135/369 (36%), Gaps = 55/369 (14%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y   +  + K + +  A  LF+ ML  G  P+ VT+S LI          KA + FE
Sbjct: 553 VVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFE 612

Query: 225 R----------------------------------------------------MPSFGCD 232
           R                                                    M   GC+
Sbjct: 613 RMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCE 672

Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 292
           P+ + Y ++ID   + G ++ A  +        +      +S+LI  Y      D    V
Sbjct: 673 PNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKV 732

Query: 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
             +M      PN++ Y  ++D + +  +  +   + + M + G  PN  TY +++  +GR
Sbjct: 733 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGR 792

Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412
               E  L +   M  KG+  +   Y  L+  C   G  D A  + E+MK + +    + 
Sbjct: 793 IGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQT-HWPTHAA 851

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
            +  +I       +  E+  + +E+ +    P L +   L+    KAQR +  +R L  +
Sbjct: 852 GYRKVIE--GFNKEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEV 909

Query: 473 PELGITPDD 481
                T  D
Sbjct: 910 ATFSATLVD 918



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 41/226 (18%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWF 223
           V++Y   +    K    D+A +L   M ++G +P+ VT++ +I    R+  +    +E  
Sbjct: 745 VVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIET-CLELL 803

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           ERM S G  P+ +TY  +ID   + G +++A  L +  +   W      +  +I+  G  
Sbjct: 804 ERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIE--GFN 861

Query: 284 GNFDGCLNVYEEMKAIGVKP----------NMI--------------------------- 306
             F   L + +E+      P          N+I                           
Sbjct: 862 KEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSS 921

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
           TYN+L++++  A +  +   ++ EM+  G+ P   T+ SL++   R
Sbjct: 922 TYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFR 967



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 69/335 (20%), Positives = 123/335 (36%), Gaps = 74/335 (22%)

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRA---------------GNVEM-AFGL----Y 258
           A+E   R+  F   P   TY+ +I A+ +A                N+ M  F L    Y
Sbjct: 219 ALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMSLANLRMDGFTLRCYAY 278

Query: 259 DRARNEKWR------------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
              +  KWR             D   ++ LI     A  F+  ++    M+A    PN++
Sbjct: 279 SLCKVGKWREALTLMETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVV 338

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           TY+ LL      K+  + K +   M   G  P+   + SL+ AY  +        + ++M
Sbjct: 339 TYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKM 398

Query: 367 KEKGMQLSVTLYNTLL-AMCAD-------------------------------------- 387
            + G      +YN L+ ++C D                                      
Sbjct: 399 VKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCL 458

Query: 388 --VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
              G  ++AF +  +M   +   PD+ T+S ++       K+  A  +F EM   G   +
Sbjct: 459 CSAGKYEKAFSVIREM-IGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVAD 517

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           ++  T ++  + KA   +   +  N + E+G TP+
Sbjct: 518 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPN 552


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 205/433 (47%), Gaps = 21/433 (4%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +KA  LF++M   G KPD+VT +T+IS CAR+ +L  +  E    +   G   D    S+
Sbjct: 189 EKALELFEEMKVSGFKPDSVTLTTVISSCARLLDL-ERGKEIHMELVRSGFALDGFVSSA 247

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           ++D YG+ G +EMA  ++++ +    R +  +++++I  Y   G+   C+ ++  M   G
Sbjct: 248 LVDMYGKCGCLEMAKEVFEQIQ----RKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEG 303

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           ++P + T +++L    R+      K I+  +  N +  +    +SL+  Y +        
Sbjct: 304 IRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAE 363

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
           +V++ M +     +V  +N +++    VG   EA  IF DM+ +   +PD+ TF+S++  
Sbjct: 364 NVFQNMPKT----NVVSWNVMISGYVKVGSYLEALVIFTDMRKA-GVKPDAITFTSVLPA 418

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           CS    + + + + N ++E+  E N  V+ +L+  Y K    D+ +   N+LPE      
Sbjct: 419 CSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVS- 477

Query: 481 DRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS 540
             +   +    +     E  KL E +++S++K   V  L +           E    FN 
Sbjct: 478 --WTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQ 535

Query: 541 ISKD--VKKA--YCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHL-K 595
           +  +   K A  + +CLIDL   +  L  A ++L+   T ++  D+   S    + HL K
Sbjct: 536 MIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQ--RTPDIREDVGLLSTLFSACHLHK 593

Query: 596 SLSLGAALTALHI 608
            L LG  +  L I
Sbjct: 594 KLDLGEQIGRLLI 606



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 144/340 (42%), Gaps = 42/340 (12%)

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVT-FSTLISCARMNNLPNKAVEWFERMPSFG 230
           + ++  C     A+ +F  + +    P ++T ++ L++    N +  + +E F R+  F 
Sbjct: 45  INLYFSCHLFQSAKLVFQTIEN----PLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFP 100

Query: 231 -CDPDALTYSSMIDA---YGRAGNVEM-------------------AFGLYDRAR----- 262
              PDA TY S++ A    GR G  +M                   A G+Y +       
Sbjct: 101 YLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDA 160

Query: 263 ----NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
               +E    D  +++ +I  Y   G  +  L ++EEMK  G KP+ +T   ++ +  R 
Sbjct: 161 IKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARL 220

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
               + K I+ E+  +G + +    ++L+  YG+    E    V+ +++ K    +V  +
Sbjct: 221 LDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRK----NVVSW 276

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           N+++A  +  G +    E+F  M   E  +P   T SS++  CS    +   + +   ++
Sbjct: 277 NSMIAGYSLKGDSKSCIELFRRM-DEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYII 335

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
               E ++FV +SLI  Y K             +P+  + 
Sbjct: 336 RNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVV 375



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 84/177 (47%), Gaps = 3/177 (1%)

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
           +LL T   +K   Q K I++++   GL  N     SL+  Y      +    V++ ++  
Sbjct: 8   SLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENP 67

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
              L +TL+N L+A C       E  E+F  +      +PD++T+ S++  CS  G+V  
Sbjct: 68  ---LDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGY 124

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
            + +   ++++GF  ++ V++S +  Y K    +D ++  + +PE  +   +    C
Sbjct: 125 GKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISC 181


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 138/327 (42%), Gaps = 37/327 (11%)

Query: 164 EVILYNVTMK-VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
           +V+ YN  +  + R+ R LD A  LFD MLD+G+ PD VT++++IS        +KA   
Sbjct: 201 DVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVV 260

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
             RM   G  P+ +T++S++  Y  +G    A G++ R                      
Sbjct: 261 LVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKR---------------------- 298

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
                        M   GV+P++ TYN L+  + +  R  + + I+  M   G  PN  T
Sbjct: 299 -------------MCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSAT 345

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y +LL  Y           +   M   G+Q    ++N L+      G  D+A  +F  M+
Sbjct: 346 YGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMR 405

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
             +   PD+ T+  ++      GKV +A A F  ++  G  P+  V  +LI       + 
Sbjct: 406 -RQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKW 464

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLN 489
           D        +   GI P++ F   LLN
Sbjct: 465 DKAEELAVEMIGRGICPNNIFFNTLLN 491



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 171/373 (45%), Gaps = 20/373 (5%)

Query: 149 ALALTYFTNKLKASK-----EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF 203
           A+A++ F   +  ++      +I Y+V +    +   LD A      ++  G   + +TF
Sbjct: 70  AVAISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITF 129

Query: 204 STLISCARMNNLPNKAVEW-FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY---- 258
           S L+         ++A++    RMP  GC P+  +Y+ ++         + A  L     
Sbjct: 130 SPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMM 189

Query: 259 --DRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
             D  R   +  D  +++T+I  L       D   +++++M   G+ P+++TYN+++  +
Sbjct: 190 VADDTRG-GYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISAL 248

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
            +A+   +   +   M  NG  PN  T+ SLL  Y  +    D + V++ M   G++  V
Sbjct: 249 SKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDV 308

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
             YNTL+      G + EA +IF+ M    + +P+S T+ +++   +  G + +   + +
Sbjct: 309 FTYNTLMGYLCKNGRSMEARKIFDSMVKRGH-KPNSATYGTLLHGYATEGSLVKMHHLLD 367

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
            M+  G +P+ ++   LI  Y K  + DD +   +++   G+ PD    G +++ +    
Sbjct: 368 MMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVG 427

Query: 496 K-----EELGKLV 503
           K      + G+L+
Sbjct: 428 KVDDAMAQFGRLI 440



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 143/298 (47%), Gaps = 11/298 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVE 221
           + + Y + M        +D A   F  ++  G+ PD V F  LI   CAR  +  +KA E
Sbjct: 412 DTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCAR--DKWDKAEE 469

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
               M   G  P+ + ++++++   + G V  A  ++D       + D   ++TLI  Y 
Sbjct: 470 LAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYC 529

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G  D    + E M   GVKPN +TYN +++   +  R     +++++M   G++P   
Sbjct: 530 LHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIV 589

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN-TLLAMCADVGYTDEAFEIFED 400
           TY+++L+   +AR       +Y  M + G++  +  YN  LL +C +   TD+A  IF++
Sbjct: 590 TYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQN-NCTDDALRIFQN 648

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL----FVLTSLIQ 454
           +   +    ++ TF+ MI      G+  EA+ +F  +L  G  PN+     ++ SLI+
Sbjct: 649 LYLID-FHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIE 705



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 142/321 (44%), Gaps = 1/321 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           L K   L D M+  G++PD+  F+ LI     +   + A+  F +M   G +PD +TY  
Sbjct: 359 LVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGI 418

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           ++DA    G V+ A   + R  +E    D   F  LI        +D    +  EM   G
Sbjct: 419 VMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRG 478

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           + PN I +N LL+ + +     + K I+  M    +  +  TY +L+  Y      ++  
Sbjct: 479 ICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAA 538

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            +   M   G++ +   YNT++      G  ++AF +F  M +S+   P   T+S+++  
Sbjct: 539 KLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQM-ASKGVNPGIVTYSTILQG 597

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
                + + A+ ++  M+++G + ++     ++    +   TDD +R    L  +    +
Sbjct: 598 LFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLE 657

Query: 481 DRFCGCLLNVMTQTPKEELGK 501
           +R    +++ + +  + +  K
Sbjct: 658 NRTFNIMIDALLKGGRHDEAK 678



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 6/216 (2%)

Query: 138 ILNNMTNPDTAALALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
           +LN++      A A   F    ++   ++VI YN  +  +     +D+A +L + M+  G
Sbjct: 489 LLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDG 548

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           VKP+ VT++T+I+    N     A   F +M S G +P  +TYS+++    +A     A 
Sbjct: 549 VKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAK 608

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGN--FDGCLNVYEEMKAIGVKPNMITYNNLLD 313
            LY        + D   ++  I L G   N   D  L +++ +  I       T+N ++D
Sbjct: 609 ELYLWMIKSGIKFDIGTYN--IILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMID 666

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
            + +  R  + K ++  +   GL PN  TY  ++++
Sbjct: 667 ALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKS 702


>gi|255661144|gb|ACU25741.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 426

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 162/356 (45%), Gaps = 30/356 (8%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++LY+  +++ RK  D  KA  +F  +   G  PD V ++ +I+      L  +A    
Sbjct: 43  DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLI 102

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M + G  P+  +YS+++  Y        A  ++   R  K  +D    + +I +YG  
Sbjct: 103 SEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQL 162

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       ++  M+ +G++PN+++YN LL   G A+   +   +++ M    +  N  TY
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S++  YG+    E   ++ +EM+ +G++ +   Y+T++++   VG  D A  +F+ ++S
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282

Query: 404 S------------------------------ENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           S                              E  +PD+      I I +  G++ EA  +
Sbjct: 283 SGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           F + ++AG   ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 343 FRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILN 398



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 166/366 (45%), Gaps = 38/366 (10%)

Query: 151 ALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           A++ F+ +LK S    +++ YN  + VF K +   +A  L  +M   GV P+  ++STL+
Sbjct: 63  AISIFS-RLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           +    N    +A+  F  M    C  D  T + MID YG+ G  + A  L+   R  K  
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMG 179

Query: 268 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++   
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAY 299

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPD---------------SWTFSS-------------- 416
              G    A  +  ++K  +N   D               +W F                
Sbjct: 300 ERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFE 359

Query: 417 -MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
            MI + S   K      +F++M   G+ P+  V+  ++  YGK    D        + E+
Sbjct: 360 RMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQEV 419

Query: 476 GITPDD 481
           G    D
Sbjct: 420 GCVFSD 425



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 149/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G + +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 137/288 (47%), Gaps = 1/288 (0%)

Query: 193 DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           +R + PD  T+STLI+      L + A+ W ++M       D + YS++I+   +  +  
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL
Sbjct: 62  KAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                 K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G D D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQEVG 420


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 149/335 (44%), Gaps = 1/335 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++LY   +   RK R   +A  L   ML      +  T+  +I     + L  K ++ F
Sbjct: 43  DILLYGYLINALRKTRQARRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMF 102

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M + G  P+ + YSS+I+   R G +  A  L+D   ++  + +   +++LI      
Sbjct: 103 REMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRF 162

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G +      + +M   G+ P+++T+  L+D + +  +  +   I++ M   G +PN  TY
Sbjct: 163 GLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTY 222

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            SLL         +  + ++  M E+G+++ V  YNTL+      G T+EA  +F  M+ 
Sbjct: 223 NSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQY 282

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            E   P   T++ ++      G++  A+ +FN M   G  P+L   T L+    K    +
Sbjct: 283 EE-LTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIE 341

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
           + +     L  +   P  R    L+  M Q  + E
Sbjct: 342 EAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWE 376



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 157/326 (48%), Gaps = 1/326 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI YN  +    +     +A R F  M+  G+ PD VTF+TLI          +A + FE
Sbjct: 149 VITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFE 208

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  P+ +TY+S+++       ++ A  L++       +ID  +++TLI  Y T+G
Sbjct: 209 LMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSG 268

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             +  + ++ +M+   + P++ TY  LL  + +  R    K ++  M   G SP+ +TY 
Sbjct: 269 KTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYT 328

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
            LL    +    E+ + V+R +K    + S+ +Y+ L+         + A EIF+++ + 
Sbjct: 329 VLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTV 388

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
               P+  T++ MI      GK+ EAE +F +M E+G E +      +I+ + +  +   
Sbjct: 389 -GLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQK 447

Query: 465 VVRALNRLPELGITPDDRFCGCLLNV 490
            +  L R+ E   +P+D     L+N+
Sbjct: 448 AMEFLKRMREKNFSPNDSVTLMLVNL 473



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 104/248 (41%), Gaps = 36/248 (14%)

Query: 269 DPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
            PN    STL+K     G     L ++++M   G + +++ Y  L++ + + ++  +   
Sbjct: 6   QPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVE 65

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
           +++ M     S N+ TY  ++ +  +       L ++REM   G+  +V +Y++L+    
Sbjct: 66  LHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLC 125

Query: 387 DVGYTDEAFEIFEDMKS----------------------------------SENCQPDSW 412
            VG   EA  +F++M S                                   E   PD  
Sbjct: 126 RVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVV 185

Query: 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472
           TF+++I   S +GKV EA  +F  M++ G  PN+    SL+       + D  VR    +
Sbjct: 186 TFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVM 245

Query: 473 PELGITPD 480
            E GI  D
Sbjct: 246 VERGIKID 253



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 3/182 (1%)

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G +PN++T + L+  M    +      ++ +MT +G   +   Y  L+ A  + R     
Sbjct: 4   GYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRA 63

Query: 360 LSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
           + ++R M  +    +   Y  ++ ++C D G   +  ++F +M +   C P+   +SS+I
Sbjct: 64  VELHRRMLSEICSGNFFTYGLVIDSLCKD-GLAIKGLKMFREMINMGIC-PNVIVYSSLI 121

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                 GK+ EA  +F+EM+  G + N+    SLI    +     +  R  +++   GI 
Sbjct: 122 NGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGIL 181

Query: 479 PD 480
           PD
Sbjct: 182 PD 183



 Score = 43.1 bits (100), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/123 (20%), Positives = 58/123 (47%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           +K    + +Y++ +    + R  + A  +FD++   G+ P+ VT++ +I+         +
Sbjct: 353 IKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLE 412

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A   F +M   GC+ D ++++ +I  + +   V+ A     R R + +  + +    L+ 
Sbjct: 413 AERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVN 472

Query: 279 LYG 281
           LY 
Sbjct: 473 LYA 475


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 189/429 (44%), Gaps = 49/429 (11%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           +F  ++   + P++ TF+ L+           A+     M  FG  PD +TY++++ A+ 
Sbjct: 197 VFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHC 256

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           R G +  A  L  R + E        ++TL+  Y   G      NV E M A G +P++ 
Sbjct: 257 RKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLW 316

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
           TYN L   + +A +  +   +  EM   + +SP+  TY +L+ A  + +   D L++  E
Sbjct: 317 TYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEE 376

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCR 424
           M++KG++ S+  +N ++      G  +EA    + M + E   PD  T++++I   C  R
Sbjct: 377 MRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLK-MMTEEGLAPDVITYNTLIDAYCKAR 435

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
             V++A  + +EM+ +G + + F L +L+    K +R ++    L   P+ G  PD+   
Sbjct: 436 N-VAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSY 494

Query: 485 GCLLNVMTQTPKEE------------------------------LGKLVECVEKSNSKL- 513
           G ++    +  K E                              +GKL E ++K N  + 
Sbjct: 495 GTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMK 554

Query: 514 ----------GYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID-LCVNLNL 562
                       ++    +E D+E  F+     L N    DV    CN L++ LC++   
Sbjct: 555 KGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDV--VTCNTLMNGLCLH-GK 611

Query: 563 LENACKLLE 571
           LE A KL E
Sbjct: 612 LEKAIKLFE 620



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 107/434 (24%), Positives = 195/434 (44%), Gaps = 25/434 (5%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V+ YN  +K   +   L +A  L   M   G+ P   T++TL+S         +A  
Sbjct: 242 SPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATN 301

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKL 279
             E M +FG +PD  TY+ +     +AG V+ AF L D   +    + P+   ++TL+  
Sbjct: 302 VVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSI-VSPDVVTYNTLVDA 360

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
                     LN+ EEM+  GVK +++T+N ++  + R  +  +     K MT+ GL+P+
Sbjct: 361 CFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPD 420

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIF 398
             TY +L+ AY +AR       +  EM   G+++     NTLL  +C +  Y +EA E+ 
Sbjct: 421 VITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRY-EEAEELL 479

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
                     PD  ++ +++       K   A  +++EM +    P+++   +LI+    
Sbjct: 480 RS-PPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCT 538

Query: 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVK 518
             +  + +  LN L + G+ PDD     +++   +      G L +  +  N  L    K
Sbjct: 539 IGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKE-----GDLEKAFQFHNKMLENYFK 593

Query: 519 -------LLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE 571
                   L+    + G  +K A +LF S ++  KK      +D+     L++  CK  +
Sbjct: 594 PDVVTCNTLMNGLCLHGKLEK-AIKLFESWAEKGKK------VDVITYNTLIQALCKDGD 646

Query: 572 LGLTLEVYTDIQSR 585
           +   L  + D+++R
Sbjct: 647 VDTALHFFADMEAR 660



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 135/281 (48%), Gaps = 3/281 (1%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           + +VI YN  +  + K R++ KA  L D+M+  G+K D  T +TL+          +A E
Sbjct: 418 APDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEE 477

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
                P  G  PD ++Y +++ AY +    E A  L+D     K       ++TLIK   
Sbjct: 478 LLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLC 537

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
           T G     ++   E+   G+ P+  TYN ++    +     +    + +M +N   P+  
Sbjct: 538 TIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVV 597

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFED 400
           T  +L+         E  + ++    EKG ++ V  YNTL+ A+C D G  D A   F D
Sbjct: 598 TCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKD-GDVDTALHFFAD 656

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           M+ +   QPD++T++ +++  S  G+  EA+ M +++ E+G
Sbjct: 657 ME-ARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESG 696



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 148/338 (43%), Gaps = 3/338 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V+ YN  +    K +    A  L ++M D+GVK   VT + ++          +A+ 
Sbjct: 348 SPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALG 407

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + M   G  PD +TY+++IDAY +A NV  AF L D       ++D    +TL+    
Sbjct: 408 RLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLC 467

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
               ++    +       G  P+ ++Y  ++    +  +P     ++ EM+   L+P+  
Sbjct: 468 KEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIY 527

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY +L++         + +    E+ +KG+    T YN ++      G  ++AF+    M
Sbjct: 528 TYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKM 587

Query: 402 KSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
              EN  +PD  T ++++      GK+ +A  +F    E G + ++    +LIQ   K  
Sbjct: 588 --LENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDG 645

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
             D  +     +   G+ PD      +L+ +++  + E
Sbjct: 646 DVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSE 683



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/306 (18%), Positives = 132/306 (43%), Gaps = 37/306 (12%)

Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
           +K K +  +  YN  +K       L +A    ++++ +G+ PD+ T++ +I         
Sbjct: 518 SKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDL 577

Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
            KA ++  +M      PD +T +++++     G +E A  L++    +  ++D   ++TL
Sbjct: 578 EKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTL 637

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           I+     G+ D  L+ + +M+A G++P+  TYN +L  +  A R  + + +  ++ ++G 
Sbjct: 638 IQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGK 697

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
                +Y  +  +    + G+D                                     E
Sbjct: 698 LSERFSYPLIKSSAEEVKTGKDP------------------------------------E 721

Query: 397 IFEDMKSSENCQ-PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
           +  D +S  N +  D  +++  +      G++ EA+A+ +EM++ G   +     +L++ 
Sbjct: 722 VKSDCESGGNAKGGDQESYNKSVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYITLMEG 781

Query: 456 YGKAQR 461
             K Q+
Sbjct: 782 LIKRQK 787


>gi|115466680|ref|NP_001056939.1| Os06g0172000 [Oryza sativa Japonica Group]
 gi|55773690|dbj|BAD72273.1| putative PPR2 [Oryza sativa Japonica Group]
 gi|113594979|dbj|BAF18853.1| Os06g0172000 [Oryza sativa Japonica Group]
 gi|215697063|dbj|BAG91057.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218197679|gb|EEC80106.1| hypothetical protein OsI_21852 [Oryza sativa Indica Group]
 gi|222635046|gb|EEE65178.1| hypothetical protein OsJ_20289 [Oryza sativa Japonica Group]
          Length = 511

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 146/313 (46%), Gaps = 9/313 (2%)

Query: 182 DKAERLFDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           D A ++FD M D+   +P    +  LI+       P +A E F+ M   GC P+  +Y++
Sbjct: 141 DSALKVFDLMRDQVWYRPYVGIYVKLITMLGKCKQPERAHELFQAMVDEGCAPNLESYTA 200

Query: 241 MIDAYGRAGNVEMAFGLYDRAR-NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           ++ AY R+G  + AF L ++ +     R D   +S LIK    A +F+    + E+M   
Sbjct: 201 LVSAYSRSGRFDRAFSLLEQMKATPGCRPDVQTYSILIKSCLHAYDFERVKYLMEDMARA 260

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G++PN++TYN L+D  G+A R  ++++   EM      P+  T  S LRA+G +   E  
Sbjct: 261 GIRPNVVTYNTLIDAYGKAGRFAEMESTLLEMLTENCKPDVWTMNSTLRAFGGSGQIETM 320

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
            S Y + +  G+  ++  YN LL         ++   + E M+        SWT  +   
Sbjct: 321 ESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYY----SWTIVTYNV 376

Query: 420 ICSCRGKVSEAEAM---FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +    G+  + E M   F  M     +PN   L SL++ YG+A     +   L  +    
Sbjct: 377 VIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSLVRAYGRAGDVKKIKTVLRIVENSD 436

Query: 477 ITPDDRFCGCLLN 489
           IT D  F  CL++
Sbjct: 437 ITLDIVFFNCLVD 449



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 131/261 (50%), Gaps = 13/261 (4%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI----SCARMNNLPNKA 219
           +V  Y++ +K      D ++ + L +DM   G++P+ VT++TLI       R   + +  
Sbjct: 230 DVQTYSILIKSCLHAYDFERVKYLMEDMARAGIRPNVVTYNTLIDAYGKAGRFAEMESTL 289

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLI 277
           +E    M +  C PD  T +S + A+G +G +E     Y++ +     I PN   ++ L+
Sbjct: 290 LE----MLTENCKPDVWTMNSTLRAFGGSGQIETMESCYEKFQASG--ISPNIKTYNILL 343

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             YG A  ++    V E M+       ++TYN ++D  GRA    Q++ I++ M    + 
Sbjct: 344 DSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIK 403

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           PN  T  SL+RAYGRA   +   +V R ++   + L +  +N L+     VG   E +++
Sbjct: 404 PNCVTLCSLVRAYGRAGDVKKIKTVLRIVENSDITLDIVFFNCLVDAFGRVGCLAEMWDV 463

Query: 398 FEDMKSSENCQPDSWTFSSMI 418
            + MK  + C+PD  T ++MI
Sbjct: 464 LDIMK-LQRCKPDKVTCTTMI 483



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 143/299 (47%), Gaps = 8/299 (2%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V +Y   + +  KC+  ++A  LF  M+D G  P+  +++ L+S    +   ++A    E
Sbjct: 160 VGIYVKLITMLGKCKQPERAHELFQAMVDEGCAPNLESYTALVSAYSRSGRFDRAFSLLE 219

Query: 225 RMPSF-GCDPDALTYSSMIDAYGRAGNVE-MAFGLYDRARNEKWRIDPNA--FSTLIKLY 280
           +M +  GC PD  TYS +I +   A + E + + + D AR     I PN   ++TLI  Y
Sbjct: 220 QMKATPGCRPDVQTYSILIKSCLHAYDFERVKYLMEDMARAG---IRPNVVTYNTLIDAY 276

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           G AG F    +   EM     KP++ T N+ L   G + +   +++ Y++   +G+SPN 
Sbjct: 277 GKAGRFAEMESTLLEMLTENCKPDVWTMNSTLRAFGGSGQIETMESCYEKFQASGISPNI 336

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
            TY  LL +YG+A+  E   +V   M++     ++  YN ++      G  ++   IF  
Sbjct: 337 KTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRL 396

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           MK SE  +P+  T  S++      G V + + +   +  +    ++     L+  +G+ 
Sbjct: 397 MK-SERIKPNCVTLCSLVRAYGRAGDVKKIKTVLRIVENSDITLDIVFFNCLVDAFGRV 454



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 116/230 (50%), Gaps = 4/230 (1%)

Query: 282 TAGNFDGCLNVYEEMK-AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
           TA  +D  L V++ M+  +  +P +  Y  L+  +G+ K+P +   +++ M D G +PN 
Sbjct: 136 TALRWDSALKVFDLMRDQVWYRPYVGIYVKLITMLGKCKQPERAHELFQAMVDEGCAPNL 195

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
            +Y +L+ AY R+   +   S+  +MK   G +  V  Y+ L+  C      +    + E
Sbjct: 196 ESYTALVSAYSRSGRFDRAFSLLEQMKATPGCRPDVQTYSILIKSCLHAYDFERVKYLME 255

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           DM +    +P+  T++++I      G+ +E E+   EML    +P+++ + S ++ +G +
Sbjct: 256 DM-ARAGIRPNVVTYNTLIDAYGKAGRFAEMESTLLEMLTENCKPDVWTMNSTLRAFGGS 314

Query: 460 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 508
            + + +     +    GI+P+ +    LL+   +    E++G ++E ++K
Sbjct: 315 GQIETMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQK 364



 Score = 45.8 bits (107), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 69/155 (44%)

Query: 151 ALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA 210
           A+  +  K   S  ++ YNV +  F +  DL++ E +F  M    +KP+ VT  +L+   
Sbjct: 357 AVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSLVRAY 416

Query: 211 RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP 270
                  K       + +     D + ++ ++DA+GR G +   + + D  + ++ + D 
Sbjct: 417 GRAGDVKKIKTVLRIVENSDITLDIVFFNCLVDAFGRVGCLAEMWDVLDIMKLQRCKPDK 476

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
              +T+IK +   G  D  +    ++K    K N+
Sbjct: 477 VTCTTMIKWFLIKGIDDHRVQYLRDLKDGRSKDNI 511


>gi|384249299|gb|EIE22781.1| hypothetical protein COCSUDRAFT_47692 [Coccomyxa subellipsoidea
           C-169]
          Length = 1226

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 158/328 (48%), Gaps = 11/328 (3%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKL------KASK--EVILYNVTMKVFRKCRDLDKAER 186
           C  +L  +     A  A  +F + L      +A++  +V  Y   + +    + L++A  
Sbjct: 98  CAALLKELARTGLAHRAQEFFDHVLALGDSTEAARLADVYTYTAAISICVSAQQLERALE 157

Query: 187 LFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
           L  DM  RGV+ +  T S L++ C +   L   A++ +E M   G  P+ +TY+++ID Y
Sbjct: 158 LSADMQRRGVQRNVHTHSALMNVCIKCGQL-KLALDVWEDMQRDGIVPNVVTYNTLIDVY 216

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
           G+ G  E A  +  R + +        ++TL+    T+G +   L +YEEM+A G   N 
Sbjct: 217 GKLGQWEQALQVLRRMKFQGIEPVTRTYNTLMIACNTSGQWQTALQLYEEMRAAGHALNT 276

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
            +YN L+    +A    QV   Y++M   G   +  TY+SL+ A  ++   +  L  + E
Sbjct: 277 TSYNALISAHSKAGDLPQVLDTYRQMVQQGCERSVITYSSLISACEKSGEWQLALRFFDE 336

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
             +   + +V  +N+L+  CA     ++A E+FE M+  + C PD  T++++I+     G
Sbjct: 337 CLKDNCRPNVITFNSLITACAQGAQWEKARELFELMQ-QQGCTPDVVTYTALISAYERGG 395

Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           K   A   F  M   G +P+  V  ++I
Sbjct: 396 KWQLALQAFQAMQAKGCKPDSIVYNAII 423



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 159/325 (48%), Gaps = 21/325 (6%)

Query: 183 KAERLFDDMLDRGVK------PDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDA 235
           +A+  FD +L  G         D  T++  IS C     L  +A+E    M   G   + 
Sbjct: 113 RAQEFFDHVLALGDSTEAARLADVYTYTAAISICVSAQQL-ERALELSADMQRRGVQRNV 171

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVY 293
            T+S++++   + G +++A  +++  + +   I PN   ++TLI +YG  G ++  L V 
Sbjct: 172 HTHSALMNVCIKCGQLKLALDVWEDMQRDG--IVPNVVTYNTLIDVYGKLGQWEQALQVL 229

Query: 294 EEMKAIGVKPNMITYNNLL---DTMGRAKRPWQVK-TIYKEMTDNGLSPNWNTYASLLRA 349
             MK  G++P   TYN L+   +T G+    WQ    +Y+EM   G + N  +Y +L+ A
Sbjct: 230 RRMKFQGIEPVTRTYNTLMIACNTSGQ----WQTALQLYEEMRAAGHALNTTSYNALISA 285

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
           + +A      L  YR+M ++G + SV  Y++L++ C   G    A   F++    +NC+P
Sbjct: 286 HSKAGDLPQVLDTYRQMVQQGCERSVITYSSLISACEKSGEWQLALRFFDECLK-DNCRP 344

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           +  TF+S+IT C+   +  +A  +F  M + G  P++   T+LI  Y +  +    ++A 
Sbjct: 345 NVITFNSLITACAQGAQWEKARELFELMQQQGCTPDVVTYTALISAYERGGKWQLALQAF 404

Query: 470 NRLPELGITPDDRFCGCLLNVMTQT 494
             +   G  PD      +++ +  T
Sbjct: 405 QAMQAKGCKPDSIVYNAIIDTLWDT 429



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 119/276 (43%), Gaps = 35/276 (12%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           AL L+    +    + V  ++  M V  KC  L  A  +++DM   G+ P+ VT++TLI 
Sbjct: 155 ALELSADMQRRGVQRNVHTHSALMNVCIKCGQLKLALDVWEDMQRDGIVPNVVTYNTLID 214

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    +A++   RM   G +P   TY++++ A   +G  + A  LY+  R     +
Sbjct: 215 VYGKLGQWEQALQVLRRMKFQGIEPVTRTYNTLMIACNTSGQWQTALQLYEEMRAAGHAL 274

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV--------------------------- 301
           +  +++ LI  +  AG+    L+ Y +M   G                            
Sbjct: 275 NTTSYNALISAHSKAGDLPQVLDTYRQMVQQGCERSVITYSSLISACEKSGEWQLALRFF 334

Query: 302 --------KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
                   +PN+IT+N+L+    +  +  + + +++ M   G +P+  TY +L+ AY R 
Sbjct: 335 DECLKDNCRPNVITFNSLITACAQGAQWEKARELFELMQQQGCTPDVVTYTALISAYERG 394

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
              +  L  ++ M+ KG +    +YN ++    D G
Sbjct: 395 GKWQLALQAFQAMQAKGCKPDSIVYNAIIDTLWDTG 430



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 3/172 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +    K  DL +    +  M+ +G +   +T+S+LIS    +     A+ +F+   
Sbjct: 279 YNALISAHSKAGDLPQVLDTYRQMVQQGCERSVITYSSLISACEKSGEWQLALRFFDECL 338

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
              C P+ +T++S+I A  +    E A  L++  + +    D   ++ LI  Y   G + 
Sbjct: 339 KDNCRPNVITFNSLITACAQGAQWEKARELFELMQQQGCTPDVVTYTALISAYERGGKWQ 398

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW---QVKTIYKEMTDNGL 336
             L  ++ M+A G KP+ I YN ++DT+      W   Q   +++  +  GL
Sbjct: 399 LALQAFQAMQAKGCKPDSIVYNAIIDTLWDTGCAWPQRQAAVLHRRASAGGL 450


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 156/339 (46%), Gaps = 15/339 (4%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS----CARMNNLPNKA 219
           ++I Y+  +    K   +D+A +L D M+ RG  P  V ++++++    C R+     +A
Sbjct: 175 DIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQ----EA 230

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
           V+  + M      P   TYS ++  Y   G VE AF + +   +     D  +++  I+ 
Sbjct: 231 VKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEA 290

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
             + G  +    V+E M   G KP+M TY  ++D   +         + + M    + PN
Sbjct: 291 LYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPN 350

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
              Y  ++  + ++   E+ L +Y+ + + G+  S   YNT++     +   DEA E+  
Sbjct: 351 RYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLR 410

Query: 400 DM-KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN---EMLEAGFEPNLFVLTSLIQC 455
           +M +  E  +P   T+S +I      GKV   E  F+   EM++ G  P+ F  TSLIQ 
Sbjct: 411 EMQRRKEELEPSIVTYSMII---HGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQT 467

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
              A +    +  L  + + GI PDD   G L+ ++ ++
Sbjct: 468 LAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRS 506



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/445 (22%), Positives = 192/445 (43%), Gaps = 55/445 (12%)

Query: 151 ALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-- 208
           AL +F + + +   V  +N+ ++ F    D +    L  +M  RG+  +  T   ++S  
Sbjct: 16  ALGFFQSSI-SEPNVSSFNILLRGFAARDDFEVVNALLREMKARGITSNGATHGVILSAL 74

Query: 209 CARMNNLPNKAVEWFERMPSFGCD-------PDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
           CAR +   +KAV +F       C        PD++TY++++D   +AGN +     Y++ 
Sbjct: 75  CARRD--LDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLFKAGNYDAGLEYYEKM 132

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
              K       ++ L+     A   +   +V+EEM   G KP++I Y++L+D + +A R 
Sbjct: 133 VASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRV 192

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
            + + +   M   G  P    Y S++    +    ++ +   +EM+ + ++  V  Y+ +
Sbjct: 193 DEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFI 252

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           +     +G  +EAF + E+M +  +C PD+ +++  I      G+  EAE +F  M+E G
Sbjct: 253 VTGYIGMGKVEEAFAVMEEM-ADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKG 311

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
            +P++     +I  + K          L  + +  + P+      +++            
Sbjct: 312 CKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMD------------ 359

Query: 502 LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLN 561
                       G+V    LE          EA EL+  I KD        ++   V  N
Sbjct: 360 ------------GFVKSSRLE----------EALELYQRILKD-------GILPSTVTYN 390

Query: 562 LLENA-CKLLELGLTLEVYTDIQSR 585
            + NA CKL ++   LE+  ++Q R
Sbjct: 391 TVINALCKLKKMDEALELLREMQRR 415



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 128/276 (46%), Gaps = 8/276 (2%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +++A  + ++M DR   PD ++++  I          +A + FE M   GC PD  TY  
Sbjct: 262 VEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGI 321

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           +ID + + G+  MA   +     +K  + PN   ++ ++  +  +   +  L +Y+ +  
Sbjct: 322 IIDNFCKEGS--MAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILK 379

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT--DNGLSPNWNTYASLLRAYGRARYG 356
            G+ P+ +TYN +++ + + K+  +   + +EM      L P+  TY+ ++   G+    
Sbjct: 380 DGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGME 439

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
           E    +  EM + G+      Y +L+   A  G    A E+ E+M  +    PD  T+ +
Sbjct: 440 ERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKA-GIFPDDHTYGT 498

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           ++ I  CR  V  A  +  EM+  G  PN F   ++
Sbjct: 499 LVQIL-CRSDVDAAWDLLQEMMRNGHTPNEFTFKAV 533



 Score = 42.7 bits (99), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 5/111 (4%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ Y++ +    K    ++A  L  +M+D GV PD  T+++LI         ++A+E  E
Sbjct: 423 IVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLE 482

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY-DRARNEKWRIDPNAFS 274
            M   G  PD  TY +++    R+ +V+ A+ L  +  RN      PN F+
Sbjct: 483 EMLKAGIFPDDHTYGTLVQILCRS-DVDAAWDLLQEMMRNGHT---PNEFT 529


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 143/295 (48%), Gaps = 8/295 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ +K        + AE L  +M  +G  P+ VTF+ LIS      L   A+E  E++P
Sbjct: 268 YNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIP 327

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
            +GC P++L+Y+ ++ A+ +   ++ A    D   +     D  +++TL+     +G  D
Sbjct: 328 KYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 387

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + +  ++K  G  P +I+YN ++D + +A +  +   +  EM   GL P+  TY+++ 
Sbjct: 388 VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIA 447

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               R    ED +  + ++++ G++ +  LYN ++        T  A ++F  M  +  C
Sbjct: 448 AGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGN-GC 506

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV-------LTSLIQC 455
            P+  T++ +I   +  G + EA  + +E+   G E  L V       LT+ + C
Sbjct: 507 MPNESTYTILIEGLAYEGLIKEARDLLDELCSRGEEILLDVHLIDVAFLTTFLPC 561



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 153/333 (45%), Gaps = 1/333 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALA+     + +   +V+ Y + ++   K     +A +L D+M D+G  PD VT++ +++
Sbjct: 179 ALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVN 238

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   + A+E+ + +PS+GC+P+ ++Y+ ++     A   E A  L      +    
Sbjct: 239 GICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPP 298

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           +   F+ LI      G  +  L V E++   G  PN ++YN LL    + K+  +     
Sbjct: 299 NVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFL 358

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
             M   G  P+  +Y +LL A  R+   +  + +  ++K+KG    +  YNT++      
Sbjct: 359 DLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKA 418

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G T EA E+  +M  S+  QPD  T+S++        ++ +A   F ++ + G  PN  +
Sbjct: 419 GKTKEALELLNEM-VSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVL 477

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
             ++I    K + T   +     +   G  P++
Sbjct: 478 YNAIILGLCKRRETHSAIDLFAYMIGNGCMPNE 510



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 149/354 (42%), Gaps = 43/354 (12%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVE 221
           +V+ YN  M  +     +D A R      +R V+ D  T  TLI   C R       A+ 
Sbjct: 127 DVMAYNAMMAGYCGAGQVDAARRW---CAERAVERDAYTCDTLIRGLCGRGRT--ANALA 181

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + M    C PD +TY+ +++A  +    + A  L D  R++    D   ++ ++    
Sbjct: 182 VLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGIC 241

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYN----------------NLLDTMGRAKRPWQVK 325
             G  D  +   + + + G +PN ++YN                 L+  MG+   P  V 
Sbjct: 242 QEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVV 301

Query: 326 T-------------------IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
           T                   + +++   G SPN  +Y  LL A+ + +  +  ++    M
Sbjct: 302 TFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 361

Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
             +G    +  YNTLL      G  D A E+   +K  + C P   +++++I   +  GK
Sbjct: 362 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLK-DKGCAPVLISYNTVIDGLTKAGK 420

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
             EA  + NEM+  G +P++   +++     +  R +D +RA  ++ ++GI P+
Sbjct: 421 TKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPN 474



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 93/190 (48%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K   S   + YN  +  F K + +DKA    D M+ RG  PD V+++TL++    +   +
Sbjct: 328 KYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 387

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
            AVE   ++   GC P  ++Y+++ID   +AG  + A  L +   ++  + D   +ST+ 
Sbjct: 388 VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIA 447

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
                    +  +  + +++ +G++PN + YN ++  + + +       ++  M  NG  
Sbjct: 448 AGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCM 507

Query: 338 PNWNTYASLL 347
           PN +TY  L+
Sbjct: 508 PNESTYTILI 517



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 113/301 (37%), Gaps = 48/301 (15%)

Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
           +LD+A RL         +PD  T + LI       L         R     C PD + Y+
Sbjct: 82  ELDEALRLVGS----ARRPDAGTCAALI-----KKLSASGRTAEARRVLAACGPDVMAYN 132

Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
           +M+  Y  AG V+ A          +W  +                              
Sbjct: 133 AMMAGYCGAGQVDAA---------RRWCAER----------------------------- 154

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
            V+ +  T + L+  +    R      +  EM      P+  TY  LL A  +    +  
Sbjct: 155 AVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQA 214

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           + +  EM++KG    +  YN ++      G  D+A E  +++ S   C+P++ +++ ++ 
Sbjct: 215 MKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSY-GCEPNTVSYNIVLK 273

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                 +  +AE +  EM + G  PN+     LI    +    +  +  L ++P+ G +P
Sbjct: 274 GLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSP 333

Query: 480 D 480
           +
Sbjct: 334 N 334


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 152/353 (43%), Gaps = 36/353 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ +N  +    + R    A  + ++M    V PD  TF+TL+           A+   
Sbjct: 195 DVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLK 254

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            RM   GC P ++T + +I+ Y + G V  A G   +   + +  D   FST +      
Sbjct: 255 ARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQN 314

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G+ D  L V   M   G +P++ TY+ +++ +       + K I  +M D+G  P+  T+
Sbjct: 315 GHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTF 374

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ A       E+ L + RE+  KG+  +V  +N L+     VG    A  +FE+MKS
Sbjct: 375 NTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKS 434

Query: 404 SENCQPDSWTFSSMI-TICSC----------------------------------RGKVS 428
           S  C PD  T++ +I  +CS                                   R ++ 
Sbjct: 435 S-GCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIE 493

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           EAE +F++M   G   N     +LI     A+R DD    ++++   G+ P++
Sbjct: 494 EAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNN 546



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 170/371 (45%), Gaps = 18/371 (4%)

Query: 103 VKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKAS 162
           V +  ++ SC    D+  +    L + F+E+  +           AAL L    +++  S
Sbjct: 216 VLMLEEMSSCDVAPDE--TTFTTLMEGFVEEGSI----------EAALRLKARMSEMGCS 263

Query: 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
              +  NV +  + K   +  A       +  G +PD VTFST ++    N   + A++ 
Sbjct: 264 PTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKV 323

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
              M   GC+PD  TYS++I+     G +E A G+ ++  +     D   F+TLI    T
Sbjct: 324 LGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCT 383

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
               +  L++  E+   G+ PN+ T+N L++ + +   P     +++EM  +G +P+  T
Sbjct: 384 ENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVT 443

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           Y  L+     +      L + +EM+  G   S   YNT++         +EA E+F+ M 
Sbjct: 444 YNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMD 503

Query: 403 SSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GK 458
            +     ++ TF+++I  +C+   ++ +A  + ++M+  G +PN     S++  Y   G 
Sbjct: 504 VT-GIGRNAITFNTLIDGLCNAE-RIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGN 561

Query: 459 AQRTDDVVRAL 469
             +  D+++ +
Sbjct: 562 ISKAADILQTM 572



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 148/318 (46%), Gaps = 3/318 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y+  +       +L++A+ + + M+D G  PD  TF+TLI      N   +A++  
Sbjct: 335 DVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLA 394

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             +   G  P+  T++ +I+A  + G+  +A  L++  ++     D   ++ LI    ++
Sbjct: 395 RELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSS 454

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     L++ +EM+  G   + +TYN ++D + + +R  + + ++ +M   G+  N  T+
Sbjct: 455 GKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITF 514

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+     A   +D   +  +M  +G+Q +   YN++L      G   +A +I + M +
Sbjct: 515 NTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTM-T 573

Query: 404 SENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           +   + D  T++++I  +C  R +   A  +   M   G +P       +IQ   +    
Sbjct: 574 ANGFEVDVVTYATLINGLCKAR-RTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNG 632

Query: 463 DDVVRALNRLPELGITPD 480
            D +     + E+G  PD
Sbjct: 633 RDALSLFREMTEVGGPPD 650



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 117/267 (43%), Gaps = 1/267 (0%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           L++A  L  ++  +G+ P+  TF+ LI+       P+ AV  FE M S GC PD +TY+ 
Sbjct: 387 LEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNI 446

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           +ID    +G +  A  L               ++T+I         +    V+++M   G
Sbjct: 447 LIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTG 506

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           +  N IT+N L+D +  A+R      +  +M   GL PN  TY S+L  Y +        
Sbjct: 507 IGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAA 566

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            + + M   G ++ V  Y TL+        T  A ++   M+  +  +P    ++ +I  
Sbjct: 567 DILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRM-KGMKPTPKAYNPVIQS 625

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLF 447
                   +A ++F EM E G  P+ F
Sbjct: 626 LFRGNNGRDALSLFREMTEVGGPPDAF 652



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 175/403 (43%), Gaps = 23/403 (5%)

Query: 186 RLFDDMLDR--------GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
           +LFDD  D         GV+ +   ++ L++     +        +  M S G +PD +T
Sbjct: 139 QLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVT 198

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           ++++IDA  RA     A  + +   +     D   F+TL++ +   G+ +  L +   M 
Sbjct: 199 FNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMS 258

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
            +G  P  +T N L++   +  R        ++   +G  P+  T+++ +    +  + +
Sbjct: 259 EMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVD 318

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
             L V   M ++G +  V  Y+T++    + G  +EA  I   M  S  C PD+ TF+++
Sbjct: 319 HALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDS-GCLPDTTTFNTL 377

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I       ++ EA  +  E+   G  PN++    LI    K       VR    +   G 
Sbjct: 378 IVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGC 437

Query: 478 TPDDRFCGCLLNVMTQTPK----EELGKLVECVEKSNSKLGY--VVKLLLEEQDIEGDFK 531
           TPD+     L++ +  + K     +L K +E      S + Y  ++  L + + IE    
Sbjct: 438 TPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIE---- 493

Query: 532 KEATELFNS--ISKDVKKAYC-NCLIDLCVNLNLLENACKLLE 571
            EA E+F+   ++   + A   N LID   N   +++A +L++
Sbjct: 494 -EAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVD 535



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 91/188 (48%), Gaps = 5/188 (2%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKA 219
            +  I +N  +        +D A  L D M+  G++P+NVT++++++  C + N   +KA
Sbjct: 508 GRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGN--ISKA 565

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
            +  + M + G + D +TY+++I+   +A   + A  L    R +  +  P A++ +I+ 
Sbjct: 566 ADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQS 625

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSP 338
                N    L+++ EM  +G  P+  TY  +   + R   P  +      EM DNG  P
Sbjct: 626 LFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIP 685

Query: 339 NWNTYASL 346
            ++++  L
Sbjct: 686 EFSSFRML 693



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 99/256 (38%), Gaps = 37/256 (14%)

Query: 261 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK----------------------- 297
           AR++      + +  +I+  GTAG FD    +  EM+                       
Sbjct: 81  ARDDGLTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLVQSFIGSYARLQL 140

Query: 298 -------------AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                          GV+ N   YN+LL  +    +   +++ Y EM+  G+ P+  T+ 
Sbjct: 141 FDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFN 200

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +++ A  RAR     + +  EM    +    T + TL+    + G  + A  +   M S 
Sbjct: 201 TVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARM-SE 259

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
             C P S T + +I      G+V +A     + +  GFEP+    ++ +    +    D 
Sbjct: 260 MGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDH 319

Query: 465 VVRALNRLPELGITPD 480
            ++ L  + + G  PD
Sbjct: 320 ALKVLGLMLQEGCEPD 335



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 72/149 (48%)

Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
           D+GL+P+ + Y  ++R  G A   +    +  EM+ +G ++ + L  + +   A +   D
Sbjct: 83  DDGLTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLVQSFIGSYARLQLFD 142

Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
           +AF++  +       Q ++  ++ ++T+ +   K+   E+ + EM   G EP++    ++
Sbjct: 143 DAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTV 202

Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDD 481
           I    +A++    V  L  +    + PD+
Sbjct: 203 IDALCRARQARTAVLMLEEMSSCDVAPDE 231


>gi|357503117|ref|XP_003621847.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496862|gb|AES78065.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 457

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 167/344 (48%), Gaps = 6/344 (1%)

Query: 137 IILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I ++ M   +  A A T   +  KL  + ++I YN  +  + +   +D A  + + M + 
Sbjct: 12  ITISTMCKSNQIAKAETVLIDGIKLGLNPDIITYNTLIDGYCRFVGIDAAYNILNRMKEA 71

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G+ PD V++++L S A    L  K+++ F+ M   G  PD  +Y+ ++  Y R G  E A
Sbjct: 72  GINPDVVSYNSLSSGAVRKCLLQKSLDLFDEMLQSGIRPDVWSYNILMHCYFRLGKPEEA 131

Query: 255 FGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            G++ R   E+  I P+  +++ +I      G  +  L ++  ++  G  P ++TYN ++
Sbjct: 132 NGVF-RDIFERGEIYPSMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVPEVLTYNAMI 190

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
           + + +A+R    + +  E  D G  PN  TY ++++   R    E  L +  EM+ KG  
Sbjct: 191 NGLCKARRLADARRVLNEFCDFGFEPNAITYTTVMKCCFRCGRLEQGLEILSEMRRKGFT 250

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
                Y T++A     G  +EA EI E M S+    PD  ++++MI +   +G+  EA  
Sbjct: 251 FDGFAYCTVVAALVKTGRIEEADEIAEKMMSN-GLVPDLASYNTMINLFCRQGRFDEALR 309

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           + +E+ + G + + +  T +I    K    +   + L+ +  LG
Sbjct: 310 LVDEIEKQGMKCDQYTHTIIIHGLCKDGNFEGAEKHLDYMNTLG 353



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 143/313 (45%), Gaps = 2/313 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+T+    K   + KAE +  D +  G+ PD +T++TLI         + A     RM  
Sbjct: 11  NITISTMCKSNQIAKAETVLIDGIKLGLNPDIITYNTLIDGYCRFVGIDAAYNILNRMKE 70

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G +PD ++Y+S+     R   ++ +  L+D       R D  +++ L+  Y   G  + 
Sbjct: 71  AGINPDVVSYNSLSSGAVRKCLLQKSLDLFDEMLQSGIRPDVWSYNILMHCYFRLGKPEE 130

Query: 289 CLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
              V+ ++   G + P+M +YN +++ + +         +++ +   G  P   TY +++
Sbjct: 131 ANGVFRDIFERGEIYPSMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVPEVLTYNAMI 190

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               +AR   D   V  E  + G + +   Y T++  C   G  ++  EI  +M+  +  
Sbjct: 191 NGLCKARRLADARRVLNEFCDFGFEPNAITYTTVMKCCFRCGRLEQGLEILSEMRR-KGF 249

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
             D + + +++      G++ EA+ +  +M+  G  P+L    ++I  + +  R D+ +R
Sbjct: 250 TFDGFAYCTVVAALVKTGRIEEADEIAEKMMSNGLVPDLASYNTMINLFCRQGRFDEALR 309

Query: 468 ALNRLPELGITPD 480
            ++ + + G+  D
Sbjct: 310 LVDEIEKQGMKCD 322



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 138/308 (44%), Gaps = 44/308 (14%)

Query: 200 NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD 259
           N+T ST+    ++       ++  +     G +PD +TY+++ID Y R   ++ A+    
Sbjct: 11  NITISTMCKSNQIAKAETVLIDGIK----LGLNPDIITYNTLIDGYCRFVGIDAAY---- 62

Query: 260 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319
                                          N+   MK  G+ P++++YN+L     R  
Sbjct: 63  -------------------------------NILNRMKEAGINPDVVSYNSLSSGAVRKC 91

Query: 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG-MQLSVTLY 378
              +   ++ EM  +G+ P+  +Y  L+  Y R    E+   V+R++ E+G +  S+  Y
Sbjct: 92  LLQKSLDLFDEMLQSGIRPDVWSYNILMHCYFRLGKPEEANGVFRDIFERGEIYPSMASY 151

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEM 437
           N ++      GY + A  +F +++      P+  T+++MI  +C  R ++++A  + NE 
Sbjct: 152 NVMINGLCKNGYVNNALMLFRNLRR-RGFVPEVLTYNAMINGLCKAR-RLADARRVLNEF 209

Query: 438 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPK 496
            + GFEPN    T++++C  +  R +  +  L+ +   G T D   +C  +  ++     
Sbjct: 210 CDFGFEPNAITYTTVMKCCFRCGRLEQGLEILSEMRRKGFTFDGFAYCTVVAALVKTGRI 269

Query: 497 EELGKLVE 504
           EE  ++ E
Sbjct: 270 EEADEIAE 277



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 4/189 (2%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I Y   MK   +C  L++   +  +M  +G   D   + T+++         +A E  E+
Sbjct: 219 ITYTTVMKCCFRCGRLEQGLEILSEMRRKGFTFDGFAYCTVVAALVKTGRIEEADEIAEK 278

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M S G  PD  +Y++MI+ + R G  + A  L D    +  + D    + +I      GN
Sbjct: 279 MMSNGLVPDLASYNTMINLFCRQGRFDEALRLVDEIEKQGMKCDQYTHTIIIHGLCKDGN 338

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           F+G     + M  +G   N++ +N++LD +G+A    +   ++  M       +  TY S
Sbjct: 339 FEGAEKHLDYMNTLGFGFNLVAFNSILDCLGKAGDIDKAVKVFDSME----VKDSFTYTS 394

Query: 346 LLRAYGRAR 354
           LL    RA+
Sbjct: 395 LLHNLCRAK 403


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 175/436 (40%), Gaps = 106/436 (24%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI- 207
           A+ L     +   S  V +YNV +    K + +  AE+LFD+MLDR V P+ +T++TLI 
Sbjct: 201 AIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLID 260

Query: 208 -------------------------SCARMNNLPN---------KAVEWFERMPSFGCDP 233
                                    +    N+L N         +A    E M  +G  P
Sbjct: 261 GYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVP 320

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI--------------DPNA------- 272
           D  TY+++ D + + GNV+ +  L + A  +  +I              + N        
Sbjct: 321 DRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVL 380

Query: 273 --------------FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
                         F+T++  Y   G+ +      E+M+A+G++PN +TYN+L+      
Sbjct: 381 KKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEM 440

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
           K   + +   K+M + G+ PN  TY +L+  YGR+   +    +  EM++KG++ +V  Y
Sbjct: 441 KNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISY 500

Query: 379 NTLL-AMCAD----------------------------------VGYTDEAFEIFEDMKS 403
             L+  +C D                                   G   +AF  F++M +
Sbjct: 501 GCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVA 560

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
            E   P   T++ +I     +GKV EAE + +E+   G   ++    SLI  Y  A    
Sbjct: 561 RE-IVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQ 619

Query: 464 DVVRALNRLPELGITP 479
             +     + + GI P
Sbjct: 620 KALELYETMKKSGIKP 635



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 161/368 (43%), Gaps = 12/368 (3%)

Query: 127 GDDFLEQDCVIILNNMT---NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDK 183
           G   L+  C I+LN +    N + A   L  F     A   V  +N  +  + +  D++K
Sbjct: 352 GVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGV-FFNTIVNGYCQVGDINK 410

Query: 184 AERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           A    + M   G++P++VT+++L+     M N+  +A +  ++M   G  P+  TY+++I
Sbjct: 411 AYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNM-EEAEKCIKKMVEKGVLPNVETYNTLI 469

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIG 300
           D YGR+   +  F + +    EK  + PN  S   LI       N      +  +M   G
Sbjct: 470 DGYGRSCLFDRCFQILEEM--EKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRG 527

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           V PN   YN L+D    A +       + EM    + P   TY  L+    +     +  
Sbjct: 528 VVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAE 587

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
           ++  E+  KG+   V  YN+L++  +  G   +A E++E MK S   +P   T+  +I  
Sbjct: 588 NLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKS-GIKPTLNTYHRLIAG 646

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           C   G V   E ++ EML+    P+  +  +LI CY +           + +   GI PD
Sbjct: 647 CGKEGLVL-VEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPD 705

Query: 481 DRFCGCLL 488
                CL+
Sbjct: 706 KMTYNCLI 713



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 159/346 (45%), Gaps = 42/346 (12%)

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCA-RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244
           +LF ++++ G++PD   +   I  A ++ +L  +A+E    M   G  P    Y+ +I  
Sbjct: 168 QLFSEIVESGLRPDQFMYGKAIQAAVKLGDL-KRAIELMTCMKRGGVSPGVFVYNVVIGG 226

Query: 245 YGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
             +   ++ A  L+D   +   R+ PN   ++TLI  Y   G  +   N+ E MK   V+
Sbjct: 227 LCKEKRMKDAEKLFDEMLDR--RVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVE 284

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P +IT+N+LL+ + RA+   + + + +EM   G  P+  TY +L   + +    + ++++
Sbjct: 285 PTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITL 344

Query: 363 YREMKEKGMQL-----SVTL------------------------------YNTLLAMCAD 387
             E   KG+Q+     S+ L                              +NT++     
Sbjct: 345 SEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQ 404

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           VG  ++A+   E M++    +P+  T++S++        + EAE    +M+E G  PN+ 
Sbjct: 405 VGDINKAYTTIEKMEAV-GLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVE 463

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
              +LI  YG++   D   + L  + + G+ P+    GCL+N + +
Sbjct: 464 TYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCK 509



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 137/301 (45%), Gaps = 4/301 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI Y   +    K  ++ +AE +  DM+ RGV P+   ++ LI  + +      A  +F+
Sbjct: 497 VISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFD 556

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M +    P  +TY+ +I+   + G V  A  L      +    D   +++LI  Y +AG
Sbjct: 557 EMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAG 616

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N    L +YE MK  G+KP + TY+ L+   G+      V+ IY+EM    L P+   Y 
Sbjct: 617 NVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLVL-VEKIYQEMLQMNLVPDRVIYN 675

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+  Y      +   S++  M+ +G+Q     YN L+      G   +   +  DMK  
Sbjct: 676 ALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMK-I 734

Query: 405 ENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               P + T+  +I +  C+ K    A   + EM E GF P++ +  +LI    +  R+ 
Sbjct: 735 RGLIPKTETYDILI-VGHCKLKDFDGAYVWYREMFENGFTPSVSICDNLITGLREEGRSH 793

Query: 464 D 464
           D
Sbjct: 794 D 794



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 156/360 (43%), Gaps = 41/360 (11%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YN  +K F + +++++AE+    M+++GV P+  T++TLI     + L ++  +  E 
Sbjct: 428 VTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEE 487

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNA--FSTLIKLYGT 282
           M   G  P+ ++Y  +I+   +  N+ E    L D        + PNA  ++ LI     
Sbjct: 488 MEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHR---GVVPNAQIYNMLIDGSCI 544

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           AG        ++EM A  + P ++TYN L++ + +  +  + + +  E+T  GLS +  T
Sbjct: 545 AGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVIT 604

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM- 401
           Y SL+  Y  A   +  L +Y  MK+ G++ ++  Y+ L+A C   G      +I+++M 
Sbjct: 605 YNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLV-LVEKIYQEML 663

Query: 402 ---------------------------------KSSENCQPDSWTFSSMITICSCRGKVS 428
                                              ++  QPD  T++ +I      G++ 
Sbjct: 664 QMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMH 723

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           + + + N+M   G  P       LI  + K +  D        + E G TP    C  L+
Sbjct: 724 KVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSVSICDNLI 783



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 117/248 (47%), Gaps = 3/248 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ YN+ +    K   + +AE L  ++  +G+  D +T+++LIS         KA+E +E
Sbjct: 567 LVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYE 626

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M   G  P   TY  +I   G+ G V +   +Y          D   ++ LI  Y   G
Sbjct: 627 TMKKSGIKPTLNTYHRLIAGCGKEGLV-LVEKIYQEMLQMNLVPDRVIYNALIHCYVEHG 685

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           +     +++  M+A G++P+ +TYN L+    +  R  +VK +  +M   GL P   TY 
Sbjct: 686 DVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYD 745

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED--MK 402
            L+  + + +  +     YREM E G   SV++ + L+    + G + +A  I  +  MK
Sbjct: 746 ILIVGHCKLKDFDGAYVWYREMFENGFTPSVSICDNLITGLREEGRSHDADVICSEMNMK 805

Query: 403 SSENCQPD 410
             ++C+ D
Sbjct: 806 GKDDCRAD 813



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/289 (19%), Positives = 118/289 (40%), Gaps = 1/289 (0%)

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
           L+S    + + +++ E +  M   G  P   + +  +++       E    L+       
Sbjct: 118 LLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESG 177

Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
            R D   +   I+     G+    + +   MK  GV P +  YN ++  + + KR    +
Sbjct: 178 LRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAE 237

Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
            ++ EM D  ++PN  TY +L+  Y +    E+  ++   MK + ++ ++  +N+LL   
Sbjct: 238 KLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGL 297

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
                 +EA  + E+M+      PD +T++++       G V  +  +  E +  G +  
Sbjct: 298 CRAQMMEEAQRVLEEMEVY-GFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQIL 356

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
            +  + L+    K    +     L +  E G+ P   F   ++N   Q 
Sbjct: 357 DYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQV 405


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 147/333 (44%), Gaps = 44/333 (13%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           + PD V+++T+I+         KAV+    M    C+P++ TY  ++D   + G VE A 
Sbjct: 6   ILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAM 65

Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
            L    + +   +D   +STLI  + + G  D    +++EM   G+ PN++ Y+ L++  
Sbjct: 66  RLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGF 125

Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARY-----------GE---- 357
            +     +   +   MT+ G+ P+  TY  ++      GRAR            GE    
Sbjct: 126 CKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPST 185

Query: 358 -----------------DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
                            D   ++  M EKG +L V  YNTL+    + G  DEA ++F  
Sbjct: 186 VTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSS 245

Query: 401 MKSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
           +    N  +PD  TF+++I      G++ +A  +++ M+E G   NLF    LI  Y K+
Sbjct: 246 LLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKS 305

Query: 460 QRTDDVVRALNRLPELGITPD--------DRFC 484
              D  +    R+ +LG+ P         D FC
Sbjct: 306 GIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFC 338



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 155/317 (48%), Gaps = 3/317 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + YNV +    K   +  A ++F+ ML++G + + V+++TLI     N   ++A++ F  
Sbjct: 186 VTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSS 245

Query: 226 MPSFG--CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           +   G   +PD +T++++I    + G ++ A  +YD         +      LI  Y  +
Sbjct: 246 LLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKS 305

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D  + +++ +  +G+ P+  TY+ ++D   +       K ++  M  +GLSP    Y
Sbjct: 306 GIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDY 365

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ +  +    E    +++EMKE   +     +N ++      G    A E+  DM+ 
Sbjct: 366 NTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQ 425

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
                PD++T+SS I   S  G++ EA+  F+ M+ +G  P+  V  SLI+ +G     +
Sbjct: 426 M-GLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIE 484

Query: 464 DVVRALNRLPELGITPD 480
           +V+  L ++ ++G+  D
Sbjct: 485 EVINLLRQMADMGVILD 501



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 162/358 (45%), Gaps = 38/358 (10%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  V++Y+  +  F K     +A  +   M +RG++PD  T++ +I     +    KA++
Sbjct: 112 SPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALD 171

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F+ M   G +P  +TY+ +I+   + G +  AF +++    +  R++  +++TLI    
Sbjct: 172 LFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLC 231

Query: 282 TAGNFDGCLNVYEEMKAIG--VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN----- 334
             G  D  + ++  +   G  V+P++IT+N ++  + +  R  +   IY  M +      
Sbjct: 232 NNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGN 291

Query: 335 ------------------------------GLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
                                         GL P+  TY+ ++  + +         ++ 
Sbjct: 292 LFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFS 351

Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
            MK  G+  ++  YNTL+A        ++A  +F++MK S NC+PD+ +F+ MI      
Sbjct: 352 RMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKES-NCEPDTISFNIMIDGTLKA 410

Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
           G +  A+ + N+M + G  P+ +  +S I    K  + ++   A + +   GITPD+ 
Sbjct: 411 GDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNH 468



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 121/254 (47%), Gaps = 35/254 (13%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI +N  ++   K   LDKA  ++D M++RG   +  T   LI     + + +KA+E +
Sbjct: 256 DVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELW 315

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR--------------------- 262
           +R+   G  P + TYS MID + +   +  A GL+ R +                     
Sbjct: 316 KRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKE 375

Query: 263 ---NEKWRI---------DPNAFSTLIKLYGT--AGNFDGCLNVYEEMKAIGVKPNMITY 308
               +  R+         +P+  S  I + GT  AG+      +  +M+ +G+ P+  TY
Sbjct: 376 SSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTY 435

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
           ++ ++ + +  +  + K  +  M  +G++P+ + Y SL++ +G     E+ +++ R+M +
Sbjct: 436 SSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMAD 495

Query: 369 KGMQLSVTLYNTLL 382
            G+ L + + N++L
Sbjct: 496 MGVILDLEITNSIL 509



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 90/184 (48%), Gaps = 1/184 (0%)

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           MK I + P++++YN +++ + + KR  +   +  EM  +   PN  TY  L+    +   
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            E+ + +  EMK KG+++ V +Y+TL++     G  D    +F++M   +   P+   +S
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEM-LEKGISPNVVVYS 119

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
            +I     +G   EA A+ + M E G +P+++  T +I    K  R    +   + + E 
Sbjct: 120 CLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEK 179

Query: 476 GITP 479
           G  P
Sbjct: 180 GEEP 183


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 135/275 (49%), Gaps = 1/275 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ +K        + AE L  +M  +G  P+ VTF+ LIS      L   A+E  E++P
Sbjct: 65  YNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIP 124

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
            +GC P++L+Y+ ++ A+ +   ++ A    D   +     D  +++TL+     +G  D
Sbjct: 125 KYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 184

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             + +  ++K  G  P +I+YN ++D + +A +  +   +  EM   GL P+  TY+++ 
Sbjct: 185 VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIA 244

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
               R    ED +  + ++++ G++ +  LYN ++        T  A ++F  M  +  C
Sbjct: 245 AGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGN-GC 303

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            P+  T++ +I   +  G + EA  + +E+   G 
Sbjct: 304 MPNESTYTILIEGLAYEGLIKEARDLLDELCSRGV 338



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 139/299 (46%), Gaps = 1/299 (0%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A +L D+M D+G  PD VT++ +++        + A+E+ + +PS+GC+P+ ++Y+ ++
Sbjct: 10  QAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVL 69

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
                A   E A  L      +    +   F+ LI      G  +  L V E++   G  
Sbjct: 70  KGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCT 129

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           PN ++YN LL    + K+  +       M   G  P+  +Y +LL A  R+   +  + +
Sbjct: 130 PNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVEL 189

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
             ++K+KG    +  YNT++      G T EA E+  +M  S+  QPD  T+S++     
Sbjct: 190 LHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEM-VSKGLQPDIITYSTIAAGLC 248

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
              ++ +A   F ++ + G  PN  +  ++I    K + T   +     +   G  P++
Sbjct: 249 REDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNE 307



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 76/186 (40%), Gaps = 35/186 (18%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  +    +  ++D A  L   + D+G  P  ++++T+I          +A+E  
Sbjct: 166 DIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELL 225

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M S G  PD +TYS++     R   +E A                      I+ +G  
Sbjct: 226 NEMVSKGLQPDIITYSTIAAGLCREDRIEDA----------------------IRAFG-- 261

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                      +++ +G++PN + YN ++  + + +       ++  M  NG  PN +TY
Sbjct: 262 -----------KVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY 310

Query: 344 ASLLRA 349
             L+  
Sbjct: 311 TILIEG 316


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 179/411 (43%), Gaps = 15/411 (3%)

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALT 237
           R++D A   F+ ML R   P  + F+ L+S   RM    +  +   ++M   G  P+  T
Sbjct: 69  RNIDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCT 128

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEE 295
            + +I+ +    +V++ F +   A+  K  + P    F+TLI     AG F   L ++++
Sbjct: 129 LNILINCFCLMQHVDLGFSVL--AKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDD 186

Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
           M A G +P++ TY  +++ + +         + K+M + G  P+  TY++L+ +  + R 
Sbjct: 187 MVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRL 246

Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
             + L ++  MK KG+  +V  Y +L+          EA  +  +M +S N  PD  TFS
Sbjct: 247 VNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEM-TSLNIMPDIVTFS 305

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
            +I I    G V EA+ +   M E G EPN+    SL+  Y       +  +  + +   
Sbjct: 306 LLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITR 365

Query: 476 GITPDDRFCGCLLN--VMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE 533
           G  PD      L+N   M +   E      E + +  +        L+      G   +E
Sbjct: 366 GCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKL-RE 424

Query: 534 ATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQS 584
           A ELF  +  +        L DLC    LLE  CK   LG    ++  +Q 
Sbjct: 425 ARELFKDMHTN------GYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQG 469



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 161/367 (43%), Gaps = 36/367 (9%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           KL     +I +   +    K  +  +A  LFDDM+ RG +PD  T++T+I+         
Sbjct: 154 KLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETA 213

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE------------- 264
            A    ++M   GC PD +TYS++ID+  +   V  A  ++   + +             
Sbjct: 214 AAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLI 273

Query: 265 -------KWR-------------IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
                  +W+             I P+   FS LI ++   GN      V + M  +GV+
Sbjct: 274 QGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVE 333

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           PN+ITYN+L+          + + ++  M   G  P+  +Y+ L+  Y   +  ++   +
Sbjct: 334 PNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQL 393

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
           + EM  +G+  +   Y TL+     +G   EA E+F+DM ++    PD  T+S ++    
Sbjct: 394 FNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTN-GYLPDLCTYSVLLEGFC 452

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
            +G + +A  +F  M     +PNL + T LI    K+   +   +  + L   G+ PD +
Sbjct: 453 KQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQ 512

Query: 483 FCGCLLN 489
               ++N
Sbjct: 513 IYTTIIN 519



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 149/312 (47%), Gaps = 1/312 (0%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N+ +  F   + +D    +   ++  G++P  +TF+TLI+         +A+E F+ M +
Sbjct: 130 NILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVA 189

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            GC PD  TY+++I+   + G    A GL  +      + D   +STLI         + 
Sbjct: 190 RGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNE 249

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L+++  MKA G+ P +++Y +L+  +    R  +   +  EMT   + P+  T++ L+ 
Sbjct: 250 ALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLID 309

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            + +     +   V + M E G++ +V  YN+L+   +      EA ++F D+  +  C+
Sbjct: 310 IFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLF-DVMITRGCK 368

Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
           PD +++S +I       ++ EA+ +FNEM+  G  PN    T+LI  + +  +  +    
Sbjct: 369 PDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREAREL 428

Query: 469 LNRLPELGITPD 480
              +   G  PD
Sbjct: 429 FKDMHTNGYLPD 440



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 137/301 (45%), Gaps = 5/301 (1%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
           +A  + ++M    + PD VTFS LI   C   N L  + V   + M   G +P+ +TY+S
Sbjct: 284 EASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGV--LKTMTEMGVEPNVITYNS 341

Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
           ++  Y     V  A  L+D       + D  ++S LI  Y      D    ++ EM   G
Sbjct: 342 LMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQG 401

Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
           + PN ++Y  L+    +  +  + + ++K+M  NG  P+  TY+ LL  + +  Y     
Sbjct: 402 LTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAF 461

Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
            ++R M+   ++ ++ +Y  L+      G  + A ++F ++      QPD   ++++I  
Sbjct: 462 RLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSEL-FVHGLQPDVQIYTTIING 520

Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
               G + EA   F +M E G  PN F    +I+ + + +     V+ +  + + G   D
Sbjct: 521 LCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVAD 580

Query: 481 D 481
           +
Sbjct: 581 E 581



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 136/284 (47%), Gaps = 1/284 (0%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           L    +++ +++ + +F K  ++ +A+ +   M + GV+P+ +T+++L+    +     +
Sbjct: 295 LNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVE 354

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A + F+ M + GC PD  +YS +I+ Y     ++ A  L++   ++    +  +++TLI 
Sbjct: 355 ARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIH 414

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            +   G       ++++M   G  P++ TY+ LL+   +     +   +++ M    L P
Sbjct: 415 AFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKP 474

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N   Y  L+ +  ++        ++ E+   G+Q  V +Y T++      G  DEA E F
Sbjct: 475 NLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAF 534

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
             M+  + C P+ ++++ +I         S A  +  EM + GF
Sbjct: 535 RKME-EDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGF 577



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 73/177 (41%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +  F +   L +A  LF DM   G  PD  T+S L+          KA   F  M 
Sbjct: 409 YTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQ 468

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
                P+ + Y+ +ID+  ++GN+  A  L+        + D   ++T+I      G  D
Sbjct: 469 GTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLD 528

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
             L  + +M+  G  PN  +YN ++    + K   +   +  EM D G   +  T A
Sbjct: 529 EALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVADEGTTA 585



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 55/105 (52%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           +++Y + +    K  +L+ A +LF ++   G++PD   ++T+I+      L ++A+E F 
Sbjct: 476 LVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFR 535

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID 269
           +M   GC P+  +Y+ +I  + +  +   A  L    R++ +  D
Sbjct: 536 KMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVAD 580


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 194/450 (43%), Gaps = 55/450 (12%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A  L + M+ RG   D VT+STLI    M +  ++A   F  M   GC PDA+TY +++
Sbjct: 365 EANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLM 424

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWR----IDPNAFSTLIKLYGTAGNF--DGCLNVYEEM 296
               + GN+ +A  L+    N+  R      P   S  I + G   +   D    ++EEM
Sbjct: 425 KGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEM 484

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRA 353
           KA G+ P++I+Y  L+     + +  + K ++ EM D G+ P+  T + L+      G+ 
Sbjct: 485 KAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKV 544

Query: 354 RYGEDTLSV--------------------------------YREMKEKGMQLSVTLYNTL 381
                 L V                                + +M++ G   +V    TL
Sbjct: 545 IEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATL 604

Query: 382 LAMCADVGYTDEAFEIFEDMKSSE-----NCQPDSWTFSSMI-TICSCRGKVSEAEAMFN 435
           +      G    A E+ ++M S       NC+P++ ++S +I  +C C G+  EA  +F 
Sbjct: 605 MKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKC-GREDEARELFK 663

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495
           EM   G  P++   TSLI  + ++ +  D     N + ++G+ PD      L++++ +  
Sbjct: 664 EMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEG 723

Query: 496 KE-ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLI 554
           K  E  +L+E + +       V    L +     D   EAT+LF  + K        CL 
Sbjct: 724 KVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQK------LGCLP 777

Query: 555 DLCVNLNLLENACKLLELGLTLEVYTDIQS 584
           D+     L++  C+   +   LE++  + S
Sbjct: 778 DVVTYGTLMKGLCQTGNIKTALELHKKMLS 807



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 152/341 (44%), Gaps = 46/341 (13%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +A +L + ++ RG   D VT +TL+    M +  +KA + F +M   GC P+ +T ++++
Sbjct: 546 EANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLM 605

Query: 243 DAYGRAGNVEMAFGLYDRARNEK----WRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEM 296
               ++GN+++A  L+    ++         PNA S  I + G    G  D    +++EM
Sbjct: 606 KGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEM 665

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRA 353
           KA+GV P++I+Y +L+    R+ +    K ++ EM D G+ P+  T++ L+      G+ 
Sbjct: 666 KALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKV 725

Query: 354 RYGEDTLSV--------------------------------YREMKEKGMQLSVTLYNTL 381
               + L V                                + +M++ G    V  Y TL
Sbjct: 726 IEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTL 785

Query: 382 LAMCADVGYTDEAFEIFEDMKS-----SENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
           +      G    A E+ + M S       N +PD  ++S +I      G+  EA  +F E
Sbjct: 786 MKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKE 845

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           M   G  PN+   TSLI  + ++ + +D     N + + G+
Sbjct: 846 MKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGV 886



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 154/337 (45%), Gaps = 42/337 (12%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           +K    +I Y++ +    K R  D+A  LF++M  +G+ PD ++++TLI    ++    K
Sbjct: 452 IKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEK 511

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV-----------------------EMAF 255
           A   F  M   G  PD  T S +ID   + G V                        +  
Sbjct: 512 AKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVK 571

Query: 256 GLYDRAR----------NEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEM------K 297
           GL  + R           +K    PN  +  TL+K    +GN    L +++ M       
Sbjct: 572 GLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPY 631

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
            I  KPN I+Y+ ++D + +  R  + + ++KEM   G+ P+  +Y SL+  + R+   +
Sbjct: 632 GINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWK 691

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           D   ++ EM + G+Q  VT ++ L+ M    G   EA E+ E M     C P++ T++++
Sbjct: 692 DAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVM-IQRGCIPNTVTYTTL 750

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           +       ++SEA  +F +M + G  P++    +L++
Sbjct: 751 VKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMK 787



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 169/380 (44%), Gaps = 60/380 (15%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDN----------------------- 200
           +VI Y   +  F      +KA+ LF++MLD G++PD                        
Sbjct: 199 DVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELL 258

Query: 201 ------------VTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
                       VT+STLI    M +  ++A + F  M   GC PDA+ Y +++    + 
Sbjct: 259 EVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQT 318

Query: 249 GNVEMAFGLYDRARNEK-------WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           G + +A  L+    N+         R D    S LI +    G       + E M   G 
Sbjct: 319 GKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGC 378

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
             +++TY+ L+  +    R  +   ++  M   G  P+  TY +L++   +       L 
Sbjct: 379 ILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQ 438

Query: 362 VYREM----KEKGMQLSVTL--YNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
           +++EM       G++   TL  Y+ ++  +C D    DEA E+FE+MK ++   PD  ++
Sbjct: 439 LHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKD-RREDEARELFEEMK-AQGIMPDVISY 496

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +++I      GK  +A+ +FNEML+ G +P++   + LI    K  +   V+ A N+L E
Sbjct: 497 TTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGK---VIEA-NKLLE 552

Query: 475 LGITPDDRFCGCLLNVMTQT 494
           + I       GC+L+V+T T
Sbjct: 553 VVIQR-----GCILDVVTCT 567



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 166/373 (44%), Gaps = 25/373 (6%)

Query: 190 DMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
           D++   ++PD  T S LI          +A E  E M   GC  D +TYS++I       
Sbjct: 44  DIVTYSIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEH 103

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM------KAIGVKP 303
            +  A  L+   +    R D   + TL+K     GN +  L +++EM        I  KP
Sbjct: 104 RISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKP 163

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
            +I+Y+ ++D + + +R  + + ++KEM   G+ P+  +Y SL+  +  +   E    ++
Sbjct: 164 TLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLF 223

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
            EM + G+Q  VT    L+ M    G   EA E+ E M     C  D  T+S++I     
Sbjct: 224 NEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVM-VHRGCILDIVTYSTLIKGLCM 282

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR----ALNRLPELGIT- 478
           + ++SEA  +F  M + G  P+     +L++   +  + +  +      LN   + GI  
Sbjct: 283 KHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKC 342

Query: 479 --PDDRFCGCLLNVMTQTPKE-ELGKLVECVEKSNSKLGYV-----VKLLLEEQDIEGDF 530
             PD      L++++ +  K  E  +L+E + +    L  V     +K L  E  I    
Sbjct: 343 IRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRIS--- 399

Query: 531 KKEATELFNSISK 543
             EAT LF S+ K
Sbjct: 400 --EATWLFMSMQK 410



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 124/241 (51%), Gaps = 31/241 (12%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  ++V + +  K   + +A  L + M+ RG  P+ VT++TL+    MN+  ++A + F
Sbjct: 708 DVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLF 767

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            +M   GC PD +TY +++    + GN++ A  L+ +  ++  +            YGT 
Sbjct: 768 MKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQ------------YGT- 814

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            NF               KP++I+Y+ ++D + +  R  + + ++KEM   G+ PN  +Y
Sbjct: 815 -NF---------------KPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISY 858

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            SL+  + R+   ED   ++ EM ++G+QL+   Y+ ++      G  D+A  +F+ M++
Sbjct: 859 TSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKMEA 916

Query: 404 S 404
           +
Sbjct: 917 N 917



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 131/277 (47%), Gaps = 15/277 (5%)

Query: 197 KPDNVTFSTLI----SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           KP+ +++S +I     C R     ++A E F+ M + G  PD ++Y+S+I  + R+G  +
Sbjct: 636 KPNAISYSIIIDGLCKCGR----EDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWK 691

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            A  L++   +   + D   FS LI +    G       + E M   G  PN +TY  L+
Sbjct: 692 DAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLV 751

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
             +    R  +   ++ +M   G  P+  TY +L++   +    +  L ++++M     Q
Sbjct: 752 KGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQ 811

Query: 373 LS------VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
                   V  Y+ ++      G  DEA E+F++MK+     P+  +++S+I      GK
Sbjct: 812 YGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKAL-GVIPNVISYTSLIHGFCRSGK 870

Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           + +A+ +FNEM++ G + N    + +I  + K  + D
Sbjct: 871 LEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQID 907



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 103/475 (21%), Positives = 199/475 (41%), Gaps = 56/475 (11%)

Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
           +K    +I Y++ +    K R  D+A  LF +M  +G+ PD +++++LI     +    K
Sbjct: 159 IKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEK 218

Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           A   F  M   G  PD  T   +ID + + G V  A  L +   +    +D   +STLIK
Sbjct: 219 AKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIK 278

Query: 279 ----------------------------LYGT-------AGNFDGCLNVYEEM----KAI 299
                                        YGT        G  +  L++++EM       
Sbjct: 279 GLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQY 338

Query: 300 GVK---PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           G+K   P++ T + L+D + +  +  +   + + M   G   +  TY++L++        
Sbjct: 339 GIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRI 398

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-----KSSENCQPDS 411
            +   ++  M++ G +     Y TL+      G  + A ++ ++M     +    C+P  
Sbjct: 399 SEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTL 458

Query: 412 WTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
            ++S +I  +C  R +  EA  +F EM   G  P++   T+LI  +  + + +      N
Sbjct: 459 ISYSIIIDGLCKDR-REDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFN 517

Query: 471 RLPELGITPDDRFCGCLLNVMTQTPKE-ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 529
            + ++GI PD      L++++ +  K  E  KL+E V +    L  V    L +      
Sbjct: 518 EMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKH 577

Query: 530 FKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQS 584
              +AT+LF  + K        C+ ++     L++  C+   + + LE++ ++ S
Sbjct: 578 RISKATQLFLKMQK------LGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLS 626



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 148/343 (43%), Gaps = 12/343 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ Y+  +K       + +A  LF  M   G +PD +T+ TL+         N A++  
Sbjct: 88  DIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLH 147

Query: 224 ERMPS------FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           + M +        C P  ++YS +ID   +    + A  L+   + +    D  ++++LI
Sbjct: 148 QEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLI 207

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
             +  +G ++    ++ EM  +G++P++ T   L+D   +  +  +   + + M   G  
Sbjct: 208 HGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCI 267

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
            +  TY++L++         +   ++  MK+ G +     Y TL+      G  + A  +
Sbjct: 268 LDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHL 327

Query: 398 FEDMKSSEN------CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
            ++M +  +       +PD  T S +I I    GKV EA  +   M++ G   ++   ++
Sbjct: 328 HQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYST 387

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           LI+      R  +       + +LG  PD    G L+  + QT
Sbjct: 388 LIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQT 430


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 163/384 (42%), Gaps = 38/384 (9%)

Query: 134 DCVIILNNMTNPDTA--ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDM 191
           +C ++LN + +  +   AL L           +V+ YN  +K     +     + L ++M
Sbjct: 231 NCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEM 290

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
           +     P+ VTF+TLIS    N L  +  E   +M   GC PD   Y+++ID   + G++
Sbjct: 291 VRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHL 350

Query: 252 EMAFGLYDRARN--------------------EKWR---------------IDPNAFSTL 276
           E+A  + +R  +                    E+W                +D   F+ L
Sbjct: 351 EVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNIL 410

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           +  +   G  D  + + E+M   G  P++ITY  +++   +     +   + K MT  G 
Sbjct: 411 VDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGC 470

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            PN  +Y  +L+    A    D   +  +M ++G  L+   +NTL+      G  ++A E
Sbjct: 471 KPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIE 530

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           + + M  +  C PD  ++S++I      GK  EA  + N M+  G  PN  + +S+    
Sbjct: 531 LLKQMLVN-GCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASAL 589

Query: 457 GKAQRTDDVVRALNRLPELGITPD 480
            +  R + V++  + + +  I  D
Sbjct: 590 SREGRINKVIQMFDNIQDTTIRSD 613



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 139/312 (44%), Gaps = 36/312 (11%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +K        ++ E L  +M D+    D+VTF+ L+     N L ++ +E  E
Sbjct: 369 VVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLE 428

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR--------------------ARNE 264
           +M   GC PD +TY+++I+ + + G ++ A  L                          E
Sbjct: 429 QMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAE 488

Query: 265 KW---------------RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
           +W                ++P  F+TLI      G  +  + + ++M   G  P++I+Y+
Sbjct: 489 RWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYS 548

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            ++D +G+A +  +   +   M + G+SPN   Y+S+  A  R       + ++  +++ 
Sbjct: 549 TVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDT 608

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
            ++    LYN +++     G T+ A E    M SS  C P+  T++ +I   +  G V E
Sbjct: 609 TIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSS-GCVPNESTYTILIRGLASEGFVKE 667

Query: 430 AEAMFNEMLEAG 441
           A+ M  E+   G
Sbjct: 668 AQEMLTELCSKG 679



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 136/349 (38%), Gaps = 41/349 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFER 225
           YN  +  + +   L+ A RL   +    V P+  T+  ++   CAR       A+   + 
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCAR--GRIADALAVLDE 184

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           MP  GC P    Y  +++A  R G    A  + +        +D    + ++      G+
Sbjct: 185 MPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGS 244

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D  L++  ++ + G +P++++YN +L  +  AKR   V+ + +EM      PN  T+ +
Sbjct: 245 VDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNT 304

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS-- 403
           L+    R    E    V  +M E G    + +Y T++      G+ + A EI   M S  
Sbjct: 305 LISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYG 364

Query: 404 --------------------------------SENCQPDSWTFSSMITICSCRGKVSEAE 431
                                            ++C  D  TF+ ++      G V    
Sbjct: 365 LKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVI 424

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +  +MLE G  P++   T++I  + K    D+ V  L  +   G  P+
Sbjct: 425 ELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPN 473



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A   L    NK  +   +I  ++   + R+ R ++K  ++FD++ D  ++ D V ++ 
Sbjct: 561 DEALELLNVMVNKGMSPNTIIYSSIASALSREGR-INKVIQMFDNIQDTTIRSDAVLYNA 619

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           +IS         +A+E+   M S GC P+  TY+ +I      G V+ A
Sbjct: 620 VISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEA 668



 Score = 42.7 bits (99), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/123 (20%), Positives = 57/123 (46%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S ++I Y+  +    K    D+A  L + M+++G+ P+ + +S++ S        NK ++
Sbjct: 541 SPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQ 600

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F+ +       DA+ Y+++I +  + G  E A        +     + + ++ LI+   
Sbjct: 601 MFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLA 660

Query: 282 TAG 284
           + G
Sbjct: 661 SEG 663


>gi|242091740|ref|XP_002436360.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
 gi|241914583|gb|EER87727.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
          Length = 999

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 146/307 (47%), Gaps = 5/307 (1%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           +YN  +  F KC   + A  LF +M+D+G   D VT S L++    +   + A+  ++RM
Sbjct: 679 VYNAMVDAFCKCGKTEDAYHLFMEMVDQGSNRDAVTVSILVTHLTKHGKLHSAISIYDRM 738

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
            S G      T++ MI  +G+ G ++ A  ++  A+     ID   ++ ++ LYG AG  
Sbjct: 739 ISSGTSQSMQTFNLMISVFGKGGKLDKAVEMFAAAQELGLPIDEKMYTNMLSLYGKAGRH 798

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                +++ MK  G++P  I++N++++    +    + K+ + EM D G +P+  +Y +L
Sbjct: 799 QEASLMFKRMKEDGIRPGKISFNSMINAYATSGLCSEAKSTFHEMQDCGHAPDSFSYLAL 858

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +RAY  A+   +     R M       S   ++ L+      G   EA  I+  MK + +
Sbjct: 859 IRAYTEAKLYMEAEEAIRMMLNSSTTPSCPHFSHLIFAFLKEGQIGEAQRIYNQMKEA-S 917

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTD 463
             PD     +M+ +    G + E   ++ E      +P+ F+L++    Y   G+     
Sbjct: 918 VAPDLACCRTMMRVYMEHGLMDEGITLY-ETTRGSLKPDSFILSAAFHLYDHAGRESEAQ 976

Query: 464 DVVRALN 470
           DV+ A++
Sbjct: 977 DVLDAIS 983



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 163/362 (45%), Gaps = 4/362 (1%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D+A+ ++D + + G KPD+   +TL+          +A E FE   +   +  A  Y++M
Sbjct: 625 DEAKFIYDQLTELGFKPDHTAIATLVVQYGQGKQLEQAQELFESASALFPE-GANVYNAM 683

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           +DA+ + G  E A+ L+    ++    D    S L+      G     +++Y+ M + G 
Sbjct: 684 VDAFCKCGKTEDAYHLFMEMVDQGSNRDAVTVSILVTHLTKHGKLHSAISIYDRMISSGT 743

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
             +M T+N ++   G+  +  +   ++    + GL  +   Y ++L  YG+A   ++   
Sbjct: 744 SQSMQTFNLMISVFGKGGKLDKAVEMFAAAQELGLPIDEKMYTNMLSLYGKAGRHQEASL 803

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           +++ MKE G++     +N+++   A  G   EA   F +M+   +  PDS+++ ++I   
Sbjct: 804 MFKRMKEDGIRPGKISFNSMINAYATSGLCSEAKSTFHEMQDCGHA-PDSFSYLALIRAY 862

Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           +      EAE     ML +   P+    + LI  + K  +  +  R  N++ E  + PD 
Sbjct: 863 TEAKLYMEAEEAIRMMLNSSTTPSCPHFSHLIFAFLKEGQIGEAQRIYNQMKEASVAPDL 922

Query: 482 RFCGCLLNV-MTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS 540
             C  ++ V M     +E   L E    S     +++       D  G  + EA ++ ++
Sbjct: 923 ACCRTMMRVYMEHGLMDEGITLYETTRGSLKPDSFILSAAFHLYDHAGR-ESEAQDVLDA 981

Query: 541 IS 542
           IS
Sbjct: 982 IS 983



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 140/327 (42%), Gaps = 37/327 (11%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL------------------ 206
           V+ Y + ++++ K   +  AE  F +ML  G +PD V   TL                  
Sbjct: 174 VVAYTILLRLYGKVGKIKLAEETFLEMLQVGCEPDAVACGTLLCMYARWGRHKDMMLFYS 233

Query: 207 -----------------ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
                            IS  +   L  K +  +++M   G  P+  TY+ +I ++ +  
Sbjct: 234 AVRRRDLVPPVSVYNYMISSLQKQKLHGKVIHVWKQMREAGALPNQFTYTVVISSFVKED 293

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
            +E A  ++   R  ++  +   +S LI      G  +  L ++EEMKA G+ P+  T  
Sbjct: 294 LLEKAMDVFGEMRQCRFVPEEATYSLLISASSRHGKGEQALRLFEEMKAQGIVPSNYTCA 353

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
           +LL    + +   +  ++  EM ++ + P+   Y  L+R YG+    E+    + ++++ 
Sbjct: 354 SLLALYYKNEDYSKALSLLSEMENSKVIPDEVIYGILIRIYGKLGLYEEAEQTFEKIEKA 413

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G+      Y  +  +  + G  D A E+ E M    N +P  +++S+++     +  +  
Sbjct: 414 GLLSDEQTYVAMAQVHLNAGDYDRALEVLESMM-MRNVKPSHFSYSAILRCYVAKEDIVA 472

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           AE  F  + + G  P++F    L++ Y
Sbjct: 473 AEDTFRALSQHGL-PDVFCCNDLLRLY 498



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 130/281 (46%), Gaps = 2/281 (0%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
           ++++ +  ++ +    K   L  A  ++D M+  G      TF+ +IS        +KAV
Sbjct: 708 SNRDAVTVSILVTHLTKHGKLHSAISIYDRMISSGTSQSMQTFNLMISVFGKGGKLDKAV 767

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E F      G   D   Y++M+  YG+AG  + A  ++ R + +  R    +F+++I  Y
Sbjct: 768 EMFAAAQELGLPIDEKMYTNMLSLYGKAGRHQEASLMFKRMKEDGIRPGKISFNSMINAY 827

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
            T+G      + + EM+  G  P+  +Y  L+     AK   + +   + M ++  +P+ 
Sbjct: 828 ATSGLCSEAKSTFHEMQDCGHAPDSFSYLALIRAYTEAKLYMEAEEAIRMMLNSSTTPSC 887

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
             ++ L+ A+ +     +   +Y +MKE  +   +    T++ +  + G  DE   ++E 
Sbjct: 888 PHFSHLIFAFLKEGQIGEAQRIYNQMKEASVAPDLACCRTMMRVYMEHGLMDEGITLYET 947

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
            + S   +PDS+  S+   +    G+ SEA+ + + +  +G
Sbjct: 948 TRGS--LKPDSFILSAAFHLYDHAGRESEAQDVLDAISVSG 986



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/390 (20%), Positives = 159/390 (40%), Gaps = 61/390 (15%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y    +V     D D+A  + + M+ R VKP + ++S ++ C         A + F  + 
Sbjct: 422 YVAMAQVHLNAGDYDRALEVLESMMMRNVKPSHFSYSAILRCYVAKEDIVAAEDTFRALS 481

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD    + ++  Y R G++E A  L  + R + +R+D +   T++K Y  +   +
Sbjct: 482 QHGL-PDVFCCNDLLRLYMRLGHLEKARALVLKMREDDFRLDEDLSMTVMKFYCKSNMIN 540

Query: 288 GCLNVYEEM----KAIGVKPNM----------------------------------ITYN 309
               +++++    K + + P M                                  +   
Sbjct: 541 DAEKIFKDIQRNNKTVKI-PTMLLLIEMYARNKSSVILREHSSSKALDGTDSSAASVALK 599

Query: 310 NLLDTMG-------------RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
           +LLD  G             R     + K IY ++T+ G  P+    A+L+  YG+ +  
Sbjct: 600 SLLDMPGGLSSVSLLISKLAREGSTDEAKFIYDQLTELGFKPDHTAIATLVVQYGQGKQL 659

Query: 357 EDTLSVYREMKEKGMQL---SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
           E      +E+ E    L      +YN ++      G T++A+ +F +M   +    D+ T
Sbjct: 660 EQA----QELFESASALFPEGANVYNAMVDAFCKCGKTEDAYHLFMEM-VDQGSNRDAVT 714

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
            S ++T  +  GK+  A ++++ M+ +G   ++     +I  +GK  + D  V       
Sbjct: 715 VSILVTHLTKHGKLHSAISIYDRMISSGTSQSMQTFNLMISVFGKGGKLDKAVEMFAAAQ 774

Query: 474 ELGITPDDRFCGCLLNVMTQTPKEELGKLV 503
           ELG+  D++    +L++  +  + +   L+
Sbjct: 775 ELGLPIDEKMYTNMLSLYGKAGRHQEASLM 804



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/380 (20%), Positives = 171/380 (45%), Gaps = 15/380 (3%)

Query: 200 NVTFSTLISCARMNNLPNKAVEWFERMPSFGC-DPDALTYSSMIDAYGRAGNVEMAFGLY 258
            +TF  +    R      +A ++F  M    C +P  + Y+ ++  YG+ G +++A   +
Sbjct: 138 RLTFREMCVVLREQRGWRQARDFFAWMKLQLCYEPSVVAYTILLRLYGKVGKIKLAEETF 197

Query: 259 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318
                     D  A  TL+ +Y   G     +  Y  ++   + P +  YN ++ ++ + 
Sbjct: 198 LEMLQVGCEPDAVACGTLLCMYARWGRHKDMMLFYSAVRRRDLVPPVSVYNYMISSLQKQ 257

Query: 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
           K   +V  ++K+M + G  PN  TY  ++ ++ +    E  + V+ EM++         Y
Sbjct: 258 KLHGKVIHVWKQMREAGALPNQFTYTVVISSFVKEDLLEKAMDVFGEMRQCRFVPEEATY 317

Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
           + L++  +  G  ++A  +FE+MK ++   P ++T +S++ +       S+A ++ +EM 
Sbjct: 318 SLLISASSRHGKGEQALRLFEEMK-AQGIVPSNYTCASLLALYYKNEDYSKALSLLSEME 376

Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
            +   P+  +   LI+ YGK    ++  +   ++ + G+  D++    +  V       +
Sbjct: 377 NSKVIPDEVIYGILIRIYGKLGLYEEAEQTFEKIEKAGLLSDEQTYVAMAQVHLNAGDYD 436

Query: 499 LG------KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD-VKKAY-C 550
                    ++  V+ S+     +++  + ++DI       A + F ++S+  +   + C
Sbjct: 437 RALEVLESMMMRNVKPSHFSYSAILRCYVAKEDIVA-----AEDTFRALSQHGLPDVFCC 491

Query: 551 NCLIDLCVNLNLLENACKLL 570
           N L+ L + L  LE A  L+
Sbjct: 492 NDLLRLYMRLGHLEKARALV 511



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 141/331 (42%), Gaps = 50/331 (15%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           ++A RLF++M  +G+ P N T ++L++    N   +KA+     M +    PD + Y  +
Sbjct: 331 EQALRLFEEMKAQGIVPSNYTCASLLALYYKNEDYSKALSLLSEMENSKVIPDEVIYGIL 390

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I  YG+ G  E A   +++        D   +  + +++  AG++D  L V E M    V
Sbjct: 391 IRIYGKLGLYEEAEQTFEKIEKAGLLSDEQTYVAMAQVHLNAGDYDRALEVLESMMMRNV 450

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
           KP+  +Y+ +L      +     +  ++ ++ +GL P+      LLR Y R  + E   +
Sbjct: 451 KPSHFSYSAILRCYVAKEDIVAAEDTFRALSQHGL-PDVFCCNDLLRLYMRLGHLEKARA 509

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-------------------- 401
           +  +M+E   +L   L  T++         ++A +IF+D+                    
Sbjct: 510 LVLKMREDDFRLDEDLSMTVMKFYCKSNMINDAEKIFKDIQRNNKTVKIPTMLLLIEMYA 569

Query: 402 --KSSENCQPDSWT---------------------------FSSMITICSCRGKVSEAEA 432
             KSS   +  S +                            S +I+  +  G   EA+ 
Sbjct: 570 RNKSSVILREHSSSKALDGTDSSAASVALKSLLDMPGGLSSVSLLISKLAREGSTDEAKF 629

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +++++ E GF+P+   + +L+  YG+ ++ +
Sbjct: 630 IYDQLTELGFKPDHTAIATLVVQYGQGKQLE 660



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 127/294 (43%), Gaps = 8/294 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y V +  F K   L+KA  +F +M      P+  T+S LIS +  +    +A+  FE M 
Sbjct: 282 YTVVISSFVKEDLLEKAMDVFGEMRQCRFVPEEATYSLLISASSRHGKGEQALRLFEEMK 341

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  P   T +S++  Y +  +   A  L     N K   D   +  LI++YG  G ++
Sbjct: 342 AQGIVPSNYTCASLLALYYKNEDYSKALSLLSEMENSKVIPDEVIYGILIRIYGKLGLYE 401

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
                +E+++  G+  +  TY  +      A    +   + + M    + P+  +Y+++L
Sbjct: 402 EAEQTFEKIEKAGLLSDEQTYVAMAQVHLNAGDYDRALEVLESMMMRNVKPSHFSYSAIL 461

Query: 348 RAYGRAR---YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           R Y         EDT   +R + + G+   V   N LL +   +G+ ++A  +   M+  
Sbjct: 462 RCYVAKEDIVAAEDT---FRALSQHGLP-DVFCCNDLLRLYMRLGHLEKARALVLKMRED 517

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           +    +  + + M   C     +++AE +F ++        +  +  LI+ Y +
Sbjct: 518 DFRLDEDLSMTVMKFYCKS-NMINDAEKIFKDIQRNNKTVKIPTMLLLIEMYAR 570


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 149/352 (42%), Gaps = 36/352 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  +K     +  D  E L  +M+  G  P+  TF+TLI+    N L  +  E  
Sbjct: 212 DIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEAL 271

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR--------------------ARN 263
            +MP  GC PD   Y+++ID   + G+ E+A  +  R                       
Sbjct: 272 SQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSA 331

Query: 264 EKWR---------------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           E+W                +D   F+ L+  +   G  D  + + E+M   G  P++ITY
Sbjct: 332 ERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITY 391

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
             +++   +     +   + K M+  G  PN  +Y  +L+   RA    D   +   M +
Sbjct: 392 TTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQ 451

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
           +G   +   +NTL+      G  ++A E+ + M  +  C PD  ++S++I      GK  
Sbjct: 452 QGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVN-GCSPDLISYSTVIDGLGKAGKTE 510

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           EA  + N M+  G  PN  + +S+     +  RTD +++  + + +  +  D
Sbjct: 511 EALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSD 562



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 139/308 (45%), Gaps = 36/308 (11%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +K        ++AE L  +M       D+VTF+ L+     N L ++ +E  E
Sbjct: 318 VVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLE 377

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR--------------------ARNE 264
           +M   GC PD +TY+++I+ + + G V+ A  L                        R E
Sbjct: 378 QMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAE 437

Query: 265 KWR---------------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
           +W                 +P  F+TLI      G  +  + + ++M   G  P++I+Y+
Sbjct: 438 RWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYS 497

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            ++D +G+A +  +   +   M + G++PN   Y+S+  A  R    +  + ++  +++ 
Sbjct: 498 TVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDA 557

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
            ++    LYN +++       TD A + F  M S+  C P+  T++ +I   +  G V E
Sbjct: 558 TVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSN-GCMPNESTYTILIRGLASEGLVRE 616

Query: 430 AEAMFNEM 437
           A+ + +E+
Sbjct: 617 AQDLLSEL 624



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 130/314 (41%), Gaps = 9/314 (2%)

Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
           A R    +  +G   D+   + ++S        ++ VE   ++PSFGC+PD ++Y++++ 
Sbjct: 162 AVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLK 221

Query: 244 AYGRAGNVEMAFGLYDRARNEKWRID--PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI 299
               A      +   +    E  R+   PN   F+TLI      G F+       +M   
Sbjct: 222 GLCMAKR----WDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEH 277

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G  P++  Y  ++D + +         I   M   GL PN   Y ++L+    A   E+ 
Sbjct: 278 GCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEA 337

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
             +  EM ++   L    +N L+      G  D   E+ E M     C PD  T++++I 
Sbjct: 338 EDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLE-HGCIPDVITYTTVIN 396

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                G V EA  +   M   G +PN    T +++   +A+R  D    ++ + + G  P
Sbjct: 397 GFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLP 456

Query: 480 DDRFCGCLLNVMTQ 493
           +      L+N M +
Sbjct: 457 NPVTFNTLINFMCK 470



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 123/322 (38%), Gaps = 40/322 (12%)

Query: 196 VKPDNVTFSTLIS--CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           V P+  T+  ++   CAR   L   A+   + MP  GC         +++A  R G    
Sbjct: 104 VPPNAYTYFPIVRSLCAR--GLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRS 161

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           A         +   +D    + ++      G  D  + +  ++ + G +P++++YN +L 
Sbjct: 162 AVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLK 221

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
            +  AKR   V+ +  EM   G  PN  T+ +L+    R    E       +M E G   
Sbjct: 222 GLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTP 281

Query: 374 SVTLYNTLL-AMCADVGYTDEAFEIFEDMKS----------------------------- 403
            + +Y T++  +C D G+ + A +I   M S                             
Sbjct: 282 DLRMYATIIDGICKD-GHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDL 340

Query: 404 -----SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
                 E+C  D  TF+ ++      G V     +  +MLE G  P++   T++I  + K
Sbjct: 341 LAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCK 400

Query: 459 AQRTDDVVRALNRLPELGITPD 480
               D+ V  L  +   G  P+
Sbjct: 401 EGLVDEAVMLLKNMSACGCKPN 422



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 105/262 (40%), Gaps = 7/262 (2%)

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           S++I +   AG    A    D A +    +   A++ +I  Y  AG             A
Sbjct: 48  SALIRSLCAAGRTADAARALDTAGDAAGVV---AYNAMIAGYCRAGQVA---AARRLAAA 101

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
           + V PN  TY  ++ ++          T+  EM   G +        +L A  R      
Sbjct: 102 VPVPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRS 161

Query: 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418
            +   + +  KG  L     N +++   + G  DE  E+   + S   C+PD  ++++++
Sbjct: 162 AVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSF-GCEPDIVSYNAVL 220

Query: 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
                  +  + E +  EM+  G  PN+    +LI    +    + V  AL+++PE G T
Sbjct: 221 KGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCT 280

Query: 479 PDDRFCGCLLNVMTQTPKEELG 500
           PD R    +++ + +    E+ 
Sbjct: 281 PDLRMYATIIDGICKDGHHEVA 302


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 148/318 (46%), Gaps = 1/318 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  YN  +    K  ++ +A  + D M+ R   P+ VT++TLIS     N   +A E  
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             + S G  PD  T++S+I       N  +A  L++  R++    D   ++ LI    + 
Sbjct: 389 RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSK 448

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D  LN+ ++M+  G   ++ITYN L+D   +A +  + + I+ EM  +G+S N  TY
Sbjct: 449 GKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTY 508

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+    ++R  ED   +  +M  +G +     YN+LL      G   +A +I + M +
Sbjct: 509 NTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAM-T 567

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S  C+PD  T+ ++I+     G+V  A  +   +   G          +IQ   + ++T 
Sbjct: 568 SNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTT 627

Query: 464 DVVRALNRLPELGITPDD 481
           + +     + E    P D
Sbjct: 628 EAINLFREMLEQNEAPPD 645



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 171/371 (46%), Gaps = 10/371 (2%)

Query: 116 EDDVFSVLRCLGDDFLEQDCVIILNNMTN--PDTAALALTYFTNKLKA----SKEVILYN 169
           +D++ SV+  + D+F  +      N M N   D  +L L   ++   +      +V  +N
Sbjct: 134 QDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFN 193

Query: 170 VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
           V +K   +   L  A  + +DM   G+ PD  TF+T++         + A+   E+M  F
Sbjct: 194 VLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEF 253

Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK-WRIDPNAFSTLIKLYGTAGNFDG 288
           GC    ++ + ++  + + G VE A        N+  +  D   F+TL+     AG+   
Sbjct: 254 GCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKH 313

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            + + + M   G  P++ TYN+++  + +     +   +  +M     SPN  TY +L+ 
Sbjct: 314 AIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLIS 373

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENC 407
              +    E+   + R +  KG+   V  +N+L+  +C    +   A E+FE+M+S + C
Sbjct: 374 TLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHR-VAMELFEEMRS-KGC 431

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD +T++ +I     +GK+ EA  M  +M  +G   ++    +LI  + KA +T +   
Sbjct: 432 EPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEE 491

Query: 468 ALNRLPELGIT 478
             + +   G++
Sbjct: 492 IFDEMEVHGVS 502



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 137/308 (44%), Gaps = 1/308 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  +N  ++     R+   A  LF++M  +G +PD  T++ LI         ++A+   
Sbjct: 399 DVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNML 458

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           ++M   GC    +TY+++ID + +A     A  ++D         +   ++TLI     +
Sbjct: 459 KQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKS 518

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
              +    + ++M   G KP+  TYN+LL    R     +   I + MT NG  P+  TY
Sbjct: 519 RRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTY 578

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+    +A   E    + R ++ KG+ L+   YN ++        T EA  +F +M  
Sbjct: 579 GTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLE 638

Query: 404 SENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
                PD+ ++  +   +C+  G + EA     E+LE GF P    L  L +        
Sbjct: 639 QNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSME 698

Query: 463 DDVVRALN 470
           + +V+ +N
Sbjct: 699 ETLVKLVN 706



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/339 (20%), Positives = 140/339 (41%), Gaps = 41/339 (12%)

Query: 146 DTAALAL-TYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFS 204
           D+AAL L    + K   S E  LY   +    +    D  +++ +DM     +    TF 
Sbjct: 63  DSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFL 122

Query: 205 TLISCARMNNLPNK---AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
            LI       L ++    V+W   +  FG  PD   Y+ M++                  
Sbjct: 123 ILIESYAQFELQDEILSVVDWM--IDEFGLKPDTHFYNRMLNLL---------------- 164

Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
                 +D N+    +KL   +         + +M   G+KP++ T+N L+  + RA + 
Sbjct: 165 ------VDGNS----LKLVEIS---------HAKMSVWGIKPDVSTFNVLIKALCRAHQL 205

Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
                + ++M   GL P+  T+ ++++ Y      +  L +  +M E G   S    N +
Sbjct: 206 RPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVI 265

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           +      G  ++A    ++M + +   PD +TF++++      G V  A  + + ML+ G
Sbjct: 266 VHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEG 325

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           ++P+++   S+I    K     + V  L+++     +P+
Sbjct: 326 YDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPN 364



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/147 (19%), Positives = 60/147 (40%)

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
            SP    Y  +L   GR+   +D   +  +MK    ++  + +  L+   A     DE  
Sbjct: 79  FSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEIL 138

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
            + + M      +PD+  ++ M+ +      +   E    +M   G +P++     LI+ 
Sbjct: 139 SVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKA 198

Query: 456 YGKAQRTDDVVRALNRLPELGITPDDR 482
             +A +    +  L  +P  G+ PD++
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEK 225


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 149/317 (47%), Gaps = 6/317 (1%)

Query: 169 NVTM--KVFRKC---RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           NV M   V R C     L +A  L++ M  +G  PD  T+S L+           AV   
Sbjct: 312 NVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRML 371

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M   GC P+ +TYS+++ ++ R G  + A  + D+   + + ++   ++ +I      
Sbjct: 372 DEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKD 431

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D    + +EMK+ G KP++ TYN ++  +       + + I++ + + G+  N  TY
Sbjct: 432 GKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITY 491

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            +L+ A  R    ++ L +  EM   G QL V  YN L+      G  D +  + E+M  
Sbjct: 492 NTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEM-V 550

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           ++  +P++++++ +I      GKV +A  +  EML  G  P++    +LI    K   T 
Sbjct: 551 TKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTH 610

Query: 464 DVVRALNRLPELGITPD 480
             +  L +LP   + PD
Sbjct: 611 AALNLLEKLPNENVHPD 627



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 145/320 (45%), Gaps = 7/320 (2%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALAL     +     + +LY   +        + +A  L D+ML  G   D  TF+ L+ 
Sbjct: 196 ALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVL 255

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                    +A    +RM + GC P  +TY  ++    R    + A  +  R       +
Sbjct: 256 GLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPE----V 311

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           +    +T+I+   T G       +YE M + G  P++ TY+ L+  + +  R      + 
Sbjct: 312 NVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRML 371

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD 387
            EM + G +PN  TY++LL ++ R    +D  ++  +M  KG  ++   YN ++ A+C D
Sbjct: 372 DEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKD 431

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
            G  D+A  + ++MK S+ C+PD  T+++MI        + EAE +F  ++E G   N  
Sbjct: 432 -GKLDQATRLVQEMK-SQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGI 489

Query: 448 VLTSLIQCYGKAQRTDDVVR 467
              +LI    +  R  + +R
Sbjct: 490 TYNTLIHALLRNGRWQEGLR 509



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 135/329 (41%), Gaps = 32/329 (9%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLI-----------SCARMNNLPN-------------- 217
           +A RL D M+ +G  P  VT+  L+           +CA +  LP               
Sbjct: 265 EAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGCL 324

Query: 218 ------KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
                 +A E +E M S GC PD  TYS ++    + G    A  + D    +    +  
Sbjct: 325 TEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIV 384

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
            +STL+  +   G +D    + ++M A G   N   YN ++  + +  +  Q   + +EM
Sbjct: 385 TYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEM 444

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
              G  P+  TY +++         E+   ++R + E+G+  +   YNTL+      G  
Sbjct: 445 KSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRW 504

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
            E   +  +M     CQ D  +++ +I      G V  + A+  EM+  G +PN F    
Sbjct: 505 QEGLRLASEMLL-HGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNM 563

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPD 480
           LI    KA +  D +     +   G+TPD
Sbjct: 564 LINELCKAGKVRDALELSKEMLNQGLTPD 592



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 120/247 (48%), Gaps = 3/247 (1%)

Query: 174 VFRKCRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
           ++  C+D  LD+A RL  +M  +G KPD  T++T+I     N+L  +A   F  +   G 
Sbjct: 425 IYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGV 484

Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
             + +TY+++I A  R G  +    L         ++D  +++ LIK     GN D  + 
Sbjct: 485 VANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMA 544

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           + EEM   G+KPN  +YN L++ + +A +      + KEM + GL+P+  TY +L+    
Sbjct: 545 LLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLC 604

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
           +  +    L++  ++  + +   +  YN L++    V   D+A  +  D   S    P+ 
Sbjct: 605 KVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLL-DKAISGGIVPNE 663

Query: 412 WTFSSMI 418
            T+  M+
Sbjct: 664 RTWGMMV 670



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 118/311 (37%), Gaps = 40/311 (12%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YNV +    +      A  L+  ML   V P   TF               A+     M 
Sbjct: 145 YNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRAGDALALLRGMA 204

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             GC PDA+ Y ++I A    G V  A  L D                            
Sbjct: 205 RHGCVPDAVLYQTVIHALVAQGGVAEAAMLLD---------------------------- 236

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
                  EM  +G   ++ T+N+L+  +    R  +   +   M   G  P+  TY  LL
Sbjct: 237 -------EMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLL 289

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           +   R R  ++  ++   + E    ++V + NT++  C   G    A E++E M  S+ C
Sbjct: 290 QGLCRTRQADEACAMLGRLPE----VNVVMLNTVIRGCLTEGKLARATELYE-MMGSKGC 344

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD  T+S ++      G+   A  M +EM E G  PN+   ++L+  + +    DD   
Sbjct: 345 PPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARA 404

Query: 468 ALNRLPELGIT 478
            L+++   G +
Sbjct: 405 MLDQMLAKGFS 415



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 82/187 (43%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I YN  +    +     +  RL  +ML  G + D ++++ LI         ++++   E 
Sbjct: 489 ITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEE 548

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M + G  P+  +Y+ +I+   +AG V  A  L     N+    D   ++TLI      G 
Sbjct: 549 MVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGW 608

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
               LN+ E++    V P+++TYN L+    + +       +  +    G+ PN  T+  
Sbjct: 609 THAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGM 668

Query: 346 LLRAYGR 352
           +++ + R
Sbjct: 669 MVQNFVR 675



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 76/154 (49%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +VI YN  +K   K  ++D++  L ++M+ +G+KP+N +++ LI+          A+E  
Sbjct: 522 DVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELS 581

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + M + G  PD +TY+++I+   + G    A  L ++  NE    D   ++ LI  +   
Sbjct: 582 KEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKV 641

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
              D    + ++  + G+ PN  T+  ++    R
Sbjct: 642 RLLDDAAMLLDKAISGGIVPNERTWGMMVQNFVR 675



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 104/255 (40%), Gaps = 16/255 (6%)

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLLAMCADVGYTDE 393
            +SP++ +Y  +L    RA    D L +YR M +++    + T      A+C  +G   +
Sbjct: 137 AVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALC-RLGRAGD 195

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A  +   M +   C PD+  + ++I     +G V+EA  + +EML  G   ++     L+
Sbjct: 196 ALALLRGM-ARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLV 254

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKLVECVEKSNS 511
                  R  +  R ++R+   G  P     G LL  + +T +  E    L    E +  
Sbjct: 255 LGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVV 314

Query: 512 KLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE 571
            L  V++  L E  +       ATEL+  +          C  D+     L+   CKL  
Sbjct: 315 MLNTVIRGCLTEGKL-----ARATELYEMMGSK------GCPPDVHTYSILMHGLCKLGR 363

Query: 572 LGLTLEVYTDIQSRS 586
            G  + +  +++ + 
Sbjct: 364 FGSAVRMLDEMEEKG 378


>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
          Length = 648

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 192/421 (45%), Gaps = 27/421 (6%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A  L Y   +   S +V+ YN  +    K +++ K+ER+ + M+D G++P+N T+++LI 
Sbjct: 83  AYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIY 142

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                 +  ++V  F+ M S G  P  +  +S I A  R   ++ A  ++D    +  + 
Sbjct: 143 GYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKP 202

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           +  ++STL+  Y   G F    ++   M + G+ PN   +N L++   R     +   I+
Sbjct: 203 NIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIF 262

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           ++M + G+ P+  T+A+++ +  R    +D L  +  M + G+  S  +Y  L+  C + 
Sbjct: 263 EDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNH 322

Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           G   +A E+  +M + +   P    FSS+I      G+V+E + + + M++ G  PN+  
Sbjct: 323 GELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVT 382

Query: 449 LTSLIQCYG--------------------------KAQRTDDVVRALNRLPELGITPDDR 482
             SL++ Y                            A+RT    +  + + E G T   +
Sbjct: 383 FNSLMEGYCLVGNMEEALHYLMLWHQLALNRIVTYMARRTTAAKKMFHEMIESGTTVSIQ 442

Query: 483 FCGCLLNVMTQTP-KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 541
             G +L  + +    +E   L+E +   N K   +   ++    ++   ++EA ELF +I
Sbjct: 443 TYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAI 502

Query: 542 S 542
           S
Sbjct: 503 S 503



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 139/278 (50%), Gaps = 1/278 (0%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           +C   + A  +F  +L  G+ PD  +++TLI         +KA E F +M      PD +
Sbjct: 41  ECTGPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVV 100

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
           TY+S+ID   +   +  +  + ++  +   R +   +++LI  Y TAG +   + V++EM
Sbjct: 101 TYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEM 160

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
            + G+ P ++  N+ +  + R  R  + K I+  M   G  PN  +Y++LL  Y      
Sbjct: 161 SSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCF 220

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
            +  S+   M  KG+  +   +N L+   A  G  D+A  IFEDM+ ++   PD+ TF++
Sbjct: 221 ANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQ-NKGMIPDTVTFAT 279

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
           +I+     G++ +A   FN M++ G  P+  V   LIQ
Sbjct: 280 VISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQ 317



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 114/249 (45%), Gaps = 2/249 (0%)

Query: 233 PDALTYSSMIDAY-GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
           P +   +S+ID         E+A  ++ R        D  +++TLI  +   G  D    
Sbjct: 26  PPSTPTTSLIDVLPAECTGPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYE 85

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
           ++ +M    V P+++TYN+L+D + + K   + + + ++M D G+ PN  TY SL+  Y 
Sbjct: 86  LFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYS 145

Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
            A   ++++ V++EM   G+   V   N+ +          EA +IF+ M   +  +P+ 
Sbjct: 146 TAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSM-VLKGPKPNI 204

Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
            ++S+++   +  G  +   ++ N M+  G  PN      LI  Y +    D  +     
Sbjct: 205 ISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFED 264

Query: 472 LPELGITPD 480
           +   G+ PD
Sbjct: 265 MQNKGMIPD 273


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 156/324 (48%), Gaps = 3/324 (0%)

Query: 137 IILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I++N  ++     LA +      KL     ++ +   +    K     +A  LFDDM+ R
Sbjct: 138 ILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVAR 197

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G +PD  T++T+I+          A    ++M   GC P+ +TYS++ID++ +   V  A
Sbjct: 198 GCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEA 257

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             ++   + +    D   +++LI+       +     +  EM+++ + P+++T+N L+DT
Sbjct: 258 LDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDT 317

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           + +  +  + + + K MT+ G+ P+  TY+SL+  Y       +   ++  M  KG +  
Sbjct: 318 ICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPD 377

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           V  YN L+     V   DEA ++F +M   +   P++ +++++I      G + EA  +F
Sbjct: 378 VFSYNILINGYCKVKRIDEAKQLFNEM-IHQGLTPNNVSYNTLIHGLCQLGSLREARNLF 436

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGK 458
             M   G  PNLF  + L+  + K
Sbjct: 437 KNMHTNGNLPNLFTYSILLDGFCK 460



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 146/310 (47%), Gaps = 6/310 (1%)

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G+ P+  T S LI+C       + A     ++   G  P  +T++++I+   + G    A
Sbjct: 128 GLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQA 187

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
             L+D       R D   ++T+I      G       + ++M+  G +PN++TY+ ++D+
Sbjct: 188 MELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDS 247

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
             + +R  +   I+  M   G+SP+  TY SL++        ++  ++  EM+   +   
Sbjct: 248 HRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPD 307

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           +  +N L+      G   EA  + + M +    +PD  T+SS++   S R +V EA  +F
Sbjct: 308 IVTFNVLVDTICKEGKVSEAQGVLKTM-TEMGVEPDVVTYSSLMYGYSLRSEVVEARKLF 366

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
           + M+  G +P++F    LI  Y K +R D+  +  N +   G+TP++     L++ + Q 
Sbjct: 367 DAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQ- 425

Query: 495 PKEELGKLVE 504
               LG L E
Sbjct: 426 ----LGSLRE 431



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 149/317 (47%), Gaps = 1/317 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ Y+  +   RK R +++A  +F  M  +G+ PD  T+++LI      +   +A     
Sbjct: 238 VVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLN 297

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
            M S    PD +T++ ++D   + G V  A G+           D   +S+L+  Y    
Sbjct: 298 EMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRS 357

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  +++ M   G KP++ +YN L++   + KR  + K ++ EM   GL+PN  +Y 
Sbjct: 358 EVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYN 417

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+    +     +  ++++ M   G   ++  Y+ LL      GY  +AF +F  M+S+
Sbjct: 418 TLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQST 477

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            + +P+   ++ +I      G + +A  +F+E+   G +PN  + T++I    K    D+
Sbjct: 478 YS-KPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDE 536

Query: 465 VVRALNRLPELGITPDD 481
            + A   + E G  PD+
Sbjct: 537 ALEAFRNMEEDGCPPDE 553



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 153/328 (46%), Gaps = 5/328 (1%)

Query: 118 DVFSVLRCLG---DDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKV 174
           D+FS ++  G   D F     +  L N +    A+ AL      L    +++ +NV +  
Sbjct: 259 DIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEAS-ALLNEMRSLNIMPDIVTFNVLVDT 317

Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
             K   + +A+ +   M + GV+PD VT+S+L+    + +   +A + F+ M + GC PD
Sbjct: 318 ICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPD 377

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
             +Y+ +I+ Y +   ++ A  L++   ++    +  +++TLI      G+     N+++
Sbjct: 378 VFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFK 437

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
            M   G  PN+ TY+ LLD   +     +   +++ M      PN   Y  L+ A  ++ 
Sbjct: 438 NMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSG 497

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
              D   ++ E+  KG+Q +  +Y T++      G  DEA E F +M+  + C PD  ++
Sbjct: 498 NLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNME-EDGCPPDEISY 556

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGF 442
           + +I         S A  +  EM + GF
Sbjct: 557 NVIIRGFLHHKDESRAVQLIGEMRDKGF 584



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 146/326 (44%), Gaps = 1/326 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  Y   +    K  +   A  L   M + G +P+ VT+ST+I   R +   N+A++ F
Sbjct: 202 DVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIF 261

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M   G  PD  TY+S+I         + A  L +  R+     D   F+ L+      
Sbjct: 262 SYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKE 321

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       V + M  +GV+P+++TY++L+          + + ++  M   G  P+  +Y
Sbjct: 322 GKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSY 381

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             L+  Y + +  ++   ++ EM  +G+  +   YNTL+     +G   EA  +F++M +
Sbjct: 382 NILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHT 441

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           + N  P+ +T+S ++     +G   +A  +F  M     +PNL +   LI    K+    
Sbjct: 442 NGNL-PNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLR 500

Query: 464 DVVRALNRLPELGITPDDRFCGCLLN 489
           D  +  + L   G+ P+ +    ++N
Sbjct: 501 DARKLFSELFVKGLQPNAQIYTTIIN 526



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 144/320 (45%), Gaps = 3/320 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S ++  YN  ++         +A  L ++M    + PD VTF+ L+         ++A  
Sbjct: 270 SPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQG 329

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + M   G +PD +TYSS++  Y     V  A  L+D    +  + D  +++ LI  Y 
Sbjct: 330 VLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYC 389

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
                D    ++ EM   G+ PN ++YN L+  + +     + + ++K M  NG  PN  
Sbjct: 390 KVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLF 449

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFED 400
           TY+ LL  + +  Y      ++R M+    + ++ +YN L+ AMC   G   +A ++F +
Sbjct: 450 TYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKS-GNLRDARKLFSE 508

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           +   +  QP++  ++++I      G + EA   F  M E G  P+      +I+ +   +
Sbjct: 509 L-FVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHK 567

Query: 461 RTDDVVRALNRLPELGITPD 480
                V+ +  + + G   D
Sbjct: 568 DESRAVQLIGEMRDKGFIAD 587



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 101/197 (51%), Gaps = 2/197 (1%)

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTY 343
           N D  L  +  M      P +I +  LL  + +  + +  V ++ K+M   GLSPN  T 
Sbjct: 77  NIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTL 136

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
           + L+  +   +  +   SV  ++ + G+Q ++  + TL+     VG   +A E+F+DM  
Sbjct: 137 SILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDM-V 195

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +  C+PD +T++++I      G+ + A  +  +M EAG +PN+   +++I  + K +R +
Sbjct: 196 ARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVN 255

Query: 464 DVVRALNRLPELGITPD 480
           + +   + +   GI+PD
Sbjct: 256 EALDIFSYMKVKGISPD 272



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 35/216 (16%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--C-------ARM-- 212
           +V  YN+ +  + K + +D+A++LF++M+ +G+ P+NV+++TLI   C       AR   
Sbjct: 377 DVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLF 436

Query: 213 ------NNLPN------------------KAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
                  NLPN                  KA   F  M S    P+ + Y+ +IDA  ++
Sbjct: 437 KNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKS 496

Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
           GN+  A  L+     +  + +   ++T+I      G  D  L  +  M+  G  P+ I+Y
Sbjct: 497 GNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISY 556

Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N ++      K   +   +  EM D G   +  T A
Sbjct: 557 NVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGTTA 592


>gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera]
          Length = 635

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/419 (21%), Positives = 188/419 (44%), Gaps = 42/419 (10%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           ++ Y   +      +  D    +   + + G++PD++ F+ +I+    +    +A+++F 
Sbjct: 107 LVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFW 166

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD-RARNEKWRIDPNAFSTLIKLYGTA 283
           +M   G  P   T++++I  YG AG  E +  L +  +++E  R +   ++ L++ +   
Sbjct: 167 KMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLZLMSQDENVRPNLRTYNVLVRAWCNK 226

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
            N     NV  +M A G++P+ +TYN +     +     Q + I  EM ++ + PN  T 
Sbjct: 227 XNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTC 286

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD---------------- 387
             ++  Y +    ++ L     MK+ G+Q ++ ++N+L+    D                
Sbjct: 287 CIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEE 346

Query: 388 -------------------VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
                               G+ D+  EIF+DM  +   QPD+  +S +       G+  
Sbjct: 347 FGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKA-RIQPDAHVYSILAKGYVRAGEPE 405

Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
           +AE + N M+++GF PN+ + T++I  +  A R +  ++   ++ E GI P+ +    L+
Sbjct: 406 KAEEILNAMIKSGFHPNVVMFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLI 465

Query: 489 ---NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 544
                  Q  K E  ++++ +E+ N +      LL+ E       KKEA  + +++  +
Sbjct: 466 WGYGEARQPWKSE--EVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVKNE 522



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 172/373 (46%), Gaps = 13/373 (3%)

Query: 117 DDVFSVLRCLGDDFLEQDCVI---ILNNMTNPDTAALALTYFTNKLKASKE---VILYNV 170
           D + S++  + ++ +E D +    ++N  +       A+ YF  K+K S        +N 
Sbjct: 124 DSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFW-KMKESGSKPTTSTFNT 182

Query: 171 TMKVFRKCRDLDKAERLFDDM-LDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMP 227
            +K +    + +++++L + M  D  V+P+  T++ L+   C + N +  KA     +M 
Sbjct: 183 LIKGYGIAGEPEESQKLLZLMSQDENVRPNLRTYNVLVRAWCNKXNIM--KAWNVVYKMV 240

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G  PDA+TY+++  AY + G    A G+    +N   + +      +I  Y   G   
Sbjct: 241 ASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIK 300

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L     MK +G++PN++ +N+L+     A     V  +   M + G+ P+  T+++++
Sbjct: 301 EALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIM 360

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            A+  A + +    ++ +M +  +Q    +Y+ L       G  ++A EI   M  S   
Sbjct: 361 NAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKS-GF 419

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            P+   F+++I      G++  A  +F +M E G  PNL    +LI  YG+A++      
Sbjct: 420 HPNVVMFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEE 479

Query: 468 ALNRLPELGITPD 480
            L  + E  + P+
Sbjct: 480 VLQIMEEFNVQPE 492



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 127/304 (41%), Gaps = 21/304 (6%)

Query: 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
           CR +    +L + M+++G                    P +     + +   G  P  +T
Sbjct: 69  CRTVRSRTKLMNIMIEKG-------------------RPQEVQSILDSIIEGGHKPSLVT 109

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           Y++++ A     + +    +  +        D   F+ +I  +  +GN    +  + +MK
Sbjct: 110 YTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMK 169

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT-DNGLSPNWNTYASLLRAYGRARYG 356
             G KP   T+N L+   G A  P + + + + M+ D  + PN  TY  L+RA+      
Sbjct: 170 ESGSKPTTSTFNTLIKGYGIAGEPEESQKLLZLMSQDENVRPNLRTYNVLVRAWCNKXNI 229

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
               +V  +M   G+Q     YNT+    A  G   +A  I  +M++S N QP+  T   
Sbjct: 230 MKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNS-NVQPNERTCCI 288

Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
           +I      GK+ EA      M + G +PNL V  SLI+ +  A   D V   L  + E G
Sbjct: 289 IIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFG 348

Query: 477 ITPD 480
           + PD
Sbjct: 349 VKPD 352



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 106/238 (44%), Gaps = 5/238 (2%)

Query: 132 EQDCVIILNNMTNPDT--AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFD 189
           E+ C II+           AL   Y    L     ++++N  +K F    D D    +  
Sbjct: 283 ERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLT 342

Query: 190 DMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG 249
            M + GVKPD +TFST+++        +K  E F+ M      PDA  YS +   Y RAG
Sbjct: 343 LMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAG 402

Query: 250 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309
             E A  + +      +  +   F+T+I  + +AG  +  + ++E+M   G+ PN+ T+ 
Sbjct: 403 EPEKAEEILNAMIKSGFHPNVVMFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFE 462

Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT---YASLLRAYGRARYGEDTLSVYR 364
            L+   G A++PW+ + + + M +  + P   T    A   RA G  +     LS  +
Sbjct: 463 TLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVK 520



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 110/231 (47%), Gaps = 4/231 (1%)

Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV-EWFERMPSFGCDPD 234
           C++  + +A +    M D G++P+ V F++LI    ++ +    V E    M  FG  PD
Sbjct: 294 CKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIK-GFIDAVDRDGVNEVLTLMEEFGVKPD 352

Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
            +T+S++++A+  AG ++    ++D     + + D + +S L K Y  AG  +    +  
Sbjct: 353 VITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILN 412

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
            M   G  PN++ +  +++    A R      I+++M + G++PN  T+ +L+  YG AR
Sbjct: 413 AMIKSGFHPNVVMFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEAR 472

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
               +  V + M+E  +Q   T    +       G   EA  I   +K+ E
Sbjct: 473 QPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVKNEE 523



 Score = 40.0 bits (92), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 16/80 (20%), Positives = 43/80 (53%)

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           + ++ I   +G+  E +++ + ++E G +P+L   T+L+      +  D +   ++++ E
Sbjct: 76  TKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEE 135

Query: 475 LGITPDDRFCGCLLNVMTQT 494
            G+ PD  F   ++N  +++
Sbjct: 136 NGMEPDSIFFNAVINAFSES 155


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 186/385 (48%), Gaps = 9/385 (2%)

Query: 151 ALTYFTNKLKAS-KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-S 208
           A T F + L++    V  +N  +    K   +++A  L+D+++ +G+ P+ V+++ +I  
Sbjct: 234 AFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILG 293

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
             R +N+ N A + ++ M   G  P+A+T++ ++D Y + G++E AF ++ R ++     
Sbjct: 294 HCRKDNI-NAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILP 352

Query: 269 DPNAFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
                  +IK    AG +F+G  +++ +  + G  P  + YN ++D   +         +
Sbjct: 353 TDTTLGIIIKGLCKAGRSFEG-RDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNV 411

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           Y+EM + G++P+  TY SL+  + +    +  L +  +MK KG+++ +  Y TL+     
Sbjct: 412 YREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCK 471

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
                 A E+  +++ +    P+ + ++SMIT       V EA  ++ +M+  G   +L 
Sbjct: 472 RRDMKSAHELLNELRGA-GLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLK 530

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
             TSLI    K+ R          +   GI PDDR    L+N +    + E  + +  +E
Sbjct: 531 TYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKI--LE 588

Query: 508 KSNSKLGYVVKLLLEEQDIEGDFKK 532
             N K   +  +L+    I G FK+
Sbjct: 589 DMNGK-NMIPSVLIYNTLIAGHFKE 612



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 154/319 (48%), Gaps = 4/319 (1%)

Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFG 230
           MK +    +L  A  L +++ + G+ P+ VT+S LI  C +  N+  KA E++  M + G
Sbjct: 152 MKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIE-KAFEFYSEMKTKG 210

Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
                 + +S+++ Y +  + + AF +++ A  E    +   F+TL+      G  +   
Sbjct: 211 IRSSVYSLNSILEGYLKCQSWQNAFTMFNDAL-ESGLANVFTFNTLLSWLCKEGKMNEAC 269

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
           N+++E+ A G+ PN+++YNN++    R         +YKEM DNG +PN  T+  L+  Y
Sbjct: 270 NLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGY 329

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
            +    E+  S++  MK+  +  + T    ++      G + E  ++F     S+   P 
Sbjct: 330 FKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKF-VSQGFVPT 388

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
              ++++I      G ++ A  ++ EM E G  P+    TSLI  + K    D  ++ LN
Sbjct: 389 CMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLN 448

Query: 471 RLPELGITPDDRFCGCLLN 489
            +   G+  D +  G L++
Sbjct: 449 DMKRKGLKMDIKAYGTLID 467



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 121/262 (46%), Gaps = 7/262 (2%)

Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
           LF+  + +G  P  + ++T+I         N A   +  M   G  P  +TY+S+ID + 
Sbjct: 376 LFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFC 435

Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
           +  N+++A  L +  + +  ++D  A+ TLI  +    +      +  E++  G+ PN  
Sbjct: 436 KGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRF 495

Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVY 363
            YN+++          +   +YK+M + G+  +  TY SL+      GR  Y  D   ++
Sbjct: 496 IYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASD---IH 552

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
            EM  KG+      +  L+    + G  + A +I EDM + +N  P    ++++I     
Sbjct: 553 TEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDM-NGKNMIPSVLIYNTLIAGHFK 611

Query: 424 RGKVSEAEAMFNEMLEAGFEPN 445
            G + EA  + +EML+ G  P+
Sbjct: 612 EGNLQEAFRLHDEMLDRGLVPD 633



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 156/334 (46%), Gaps = 4/334 (1%)

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           +V ++   K  ++ +AE+ F     RGV+ D   +S  +    +      A+     M +
Sbjct: 44  HVMLRACLKEGNILEAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRA 103

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
            G  P   T++S+I A  + GNV  A  L D   N    ++    ++L+K Y   GN   
Sbjct: 104 AGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRS 163

Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
            L +  E+   G+ PN +TY+ L+D   +     +    Y EM   G+  +  +  S+L 
Sbjct: 164 ALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILE 223

Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
            Y + +  ++  +++ +  E G+  +V  +NTLL+     G  +EA  +++++  ++   
Sbjct: 224 GYLKCQSWQNAFTMFNDALESGLA-NVFTFNTLLSWLCKEGKMNEACNLWDEV-IAKGIS 281

Query: 409 PDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           P+  +++++I +  CR   ++ A  ++ EML+ GF PN    T L+  Y K    ++   
Sbjct: 282 PNVVSYNNII-LGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFS 340

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
             +R+ +  I P D   G ++  + +  +   G+
Sbjct: 341 IFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGR 374



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 135/316 (42%), Gaps = 1/316 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + + + M  + K  D++ A  +F  M D  + P + T   +I          +  + F +
Sbjct: 320 VTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNK 379

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
             S G  P  + Y+++ID + + GN+ +A  +Y              +++LI  +    N
Sbjct: 380 FVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNN 439

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D  L +  +MK  G+K ++  Y  L+D   + +       +  E+   GLSPN   Y S
Sbjct: 440 IDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNS 499

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++  +      E+ + +Y++M  +G+   +  Y +L+      G    A +I  +M  S+
Sbjct: 500 MITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEM-LSK 558

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
              PD    + +I     +G+   A  +  +M      P++ +  +LI  + K     + 
Sbjct: 559 GILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEA 618

Query: 466 VRALNRLPELGITPDD 481
            R  + + + G+ PD+
Sbjct: 619 FRLHDEMLDRGLVPDN 634



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 120/253 (47%), Gaps = 5/253 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +  F K  +++ A  ++ +M + G+ P  VT+++LI      N  + A++    M 
Sbjct: 392 YNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMK 451

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTAGN 285
             G   D   Y ++ID + +  +++ A  L +  R     + PN F  +++I  +    N
Sbjct: 452 RKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAG--LSPNRFIYNSMITGFKNMNN 509

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  +++Y++M   G+  ++ TY +L+D + ++ R      I+ EM   G+ P+   +  
Sbjct: 510 VEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTV 569

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+         E+   +  +M  K M  SV +YNTL+A     G   EAF + ++M    
Sbjct: 570 LINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEM-LDR 628

Query: 406 NCQPDSWTFSSMI 418
              PD+ T+  ++
Sbjct: 629 GLVPDNITYDILV 641



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 123/284 (43%), Gaps = 4/284 (1%)

Query: 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257
           P     + L++     N+  +A E   +M   G   D  T   M+ A  + GN+  A   
Sbjct: 3   PSIQCMNILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQH 62

Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
           + +A+     +D  A+S  + L     N    L++  EM+A G  P   T+ +++    +
Sbjct: 63  FLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVK 122

Query: 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377
                +   +  +M + G S N     SL++ Y         L +  E+ E G+  +   
Sbjct: 123 EGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVT 182

Query: 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNE 436
           Y+ L+  C   G  ++AFE + +MK ++  +   ++ +S++     C+     A  MFN+
Sbjct: 183 YSVLIDGCCKNGNIEKAFEFYSEMK-TKGIRSSVYSLNSILEGYLKCQ-SWQNAFTMFND 240

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            LE+G   N+F   +L+    K  + ++     + +   GI+P+
Sbjct: 241 ALESGL-ANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPN 283



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 87/182 (47%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +  F K RD+  A  L +++   G+ P+   ++++I+  +  N   +A++ +++M 
Sbjct: 462 YGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMV 521

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + G   D  TY+S+ID   ++G +  A  ++    ++    D  A + LI      G F+
Sbjct: 522 NEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFE 581

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               + E+M    + P+++ YN L+    +     +   ++ EM D GL P+  TY  L+
Sbjct: 582 NARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILV 641

Query: 348 RA 349
             
Sbjct: 642 NG 643



 Score = 42.7 bits (99), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           V++YN  +    K  +L +A RL D+MLDRG+ PDN+T+  L++
Sbjct: 599 VLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVN 642


>gi|255661142|gb|ACU25740.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 426

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 161/356 (45%), Gaps = 30/356 (8%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++LY+  +++ RK  D  KA  +F  +   G  PD V ++ +I+      L  +A    
Sbjct: 43  DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 102

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M + G  P   +YS+++  Y        A  ++   R  K  +D    + +I +YG  
Sbjct: 103 SEMRTAGVTPTTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQL 162

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       ++  M+ +G++PN+++YN LL   G A+   +   +++ M    +  N  TY
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S++  YG+    E   ++ +EM+ +G++ +   Y+T++++   VG  D A  +F+ ++S
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282

Query: 404 S------------------------------ENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           S                              E  +PD+      I I +  G++ EA  +
Sbjct: 283 SGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           F + ++AG   ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 343 FRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILN 398



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 156/350 (44%), Gaps = 34/350 (9%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P   ++STL++    N    +A+  F
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTLLTMYVENKKFLEALSVF 137

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 195

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM + G+ PN  
Sbjct: 196 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSI 255

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  +G+    +    ++++++  G+ +   LY T++      G    A  +  ++
Sbjct: 256 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL 315

Query: 402 KSSENCQPD---------------SWTFSS---------------MITICSCRGKVSEAE 431
           K  +N   D               +W F                 MI + S   K     
Sbjct: 316 KRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVV 375

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
            +F++M   G+ P+  V+  ++  YGK    D        + E+G    D
Sbjct: 376 EVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQEVGCVFSD 425



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 148/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R         ++STL+ +Y     F 
Sbjct: 72  RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I    GK+  A  +F ++  +G + +  +  ++I  Y +A       R
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G D D + Y +MI AY RAG V  A     R  +E  R 
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQEVG 420


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 149/315 (47%), Gaps = 6/315 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFER 225
           +N+ +    K   + +A+ +   M  RG KPD VT++ L+   C+R N   ++A E F R
Sbjct: 268 FNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSREN--VHEARELFNR 325

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G +PD L Y+ +ID Y +   V+ A  L+    N+       ++++LI     +G 
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 + +EM      P+++TYN L+D + +  R  +   +   M   G+ PN  TY +
Sbjct: 386 ISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNA 445

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++  Y           ++  M + G++  +  YN L+         DEA  +F++M+  +
Sbjct: 446 MMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMR-HK 504

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           N  PD  +++S+I      G++   + + +EM ++G  P++     L+  + K Q  D  
Sbjct: 505 NLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKA 564

Query: 466 VRALNRLPELGITPD 480
           +    ++ E GI PD
Sbjct: 565 ISLFRQIVE-GIWPD 578



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 138/303 (45%), Gaps = 3/303 (0%)

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALT 237
           R++D A   F+ M+     P    F  L+ +  RM + P  A+  F ++ S G  P   T
Sbjct: 34  RNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPT-AISLFTQLQSKGISPSIAT 92

Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
           ++ +I+ Y    +   AF L        ++ +   F+T+I  +   G     L+  + + 
Sbjct: 93  FTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLL 152

Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
           A G   +  TY  L++ + +  +      + +EM  + + PN   Y++L+    +  +  
Sbjct: 153 AQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVS 212

Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
           D L +  ++ E+G+ L    YN+L+  C  VG   E  ++   M   EN  PD +TF+ +
Sbjct: 213 DALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKM-VRENVDPDDYTFNIL 271

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
           I      G++ EA+ +   M + G +P++    +L++ Y   +   +     NR+ + G+
Sbjct: 272 IDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGL 331

Query: 478 TPD 480
            PD
Sbjct: 332 EPD 334



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 151/330 (45%), Gaps = 2/330 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  M+ +    ++ +A  LF+ M+ RG++PD + ++ LI       + ++A+  F
Sbjct: 299 DIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLF 358

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + + +    P   +Y+S+ID    +G +     L D         D   ++ LI      
Sbjct: 359 KELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKE 418

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G     L V   M   GVKPN++TYN ++D           K I+  M  +GL P+   Y
Sbjct: 419 GRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNY 478

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             L+  Y +    ++ + +++EM+ K +   +  YN+L+    ++G      E+ ++M  
Sbjct: 479 NVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCD 538

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           S    PD  T++ ++          +A ++F +++E G  P+ +   +++    K ++  
Sbjct: 539 SGQ-SPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLK 596

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
               AL  L   G +P+ +    L+N + +
Sbjct: 597 MAEDALKHLLMHGCSPNVQTYTILINALCK 626



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 134/313 (42%), Gaps = 1/313 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +    K   +  A  L  +M    V+P+ V +S LI     +   + A+    ++ 
Sbjct: 163 YGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIG 222

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G   DA+TY+S+ID     G  +    L  +   E    D   F+ LI      G   
Sbjct: 223 ERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRIL 282

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V   M   G KP+++TYN L++     +   + + ++  M   GL P+   Y  L+
Sbjct: 283 EAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLI 342

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             Y + +  ++ + +++E+  K +  ++  YN+L+    + G      ++ ++M  S   
Sbjct: 343 DGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQ- 401

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
            PD  T++ +I      G++ EA  +   M++ G +PN+    +++  Y      +    
Sbjct: 402 PPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKD 461

Query: 468 ALNRLPELGITPD 480
             NR+ + G+ PD
Sbjct: 462 IFNRMVKSGLEPD 474



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 151/346 (43%), Gaps = 3/346 (0%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           I++N   +    A A +     LK+  +  ++ +N  +  F     + KA     ++L +
Sbjct: 95  ILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQ 154

Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           G   D  T+ TLI+    N     A+   + M      P+ + YS++ID   + G V  A
Sbjct: 155 GYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDA 214

Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
            GL  +       +D   +++LI    + G +     +  +M    V P+  T+N L+D 
Sbjct: 215 LGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDA 274

Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
           + +  R  + + +   M+  G  P+  TY +L+  Y       +   ++  M ++G++  
Sbjct: 275 LCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPD 334

Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
           V  YN L+         DEA  +F+++  ++N  P   +++S+I      G++S  + + 
Sbjct: 335 VLNYNVLIDGYCKTKMVDEAMVLFKEL-CNKNLVPTIASYNSLIDGLCNSGRISHVKKLL 393

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +EM  +   P++     LI    K  R  + +  L  + + G+ P+
Sbjct: 394 DEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPN 439



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 139/283 (49%), Gaps = 10/283 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V+ YN+ +    K   + +A  +   M+ +GVKP+ VT++ ++    + N  N A + F
Sbjct: 404 DVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIF 463

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
            RM   G +PD L Y+ +I+ Y +   V+ A  L+   R++    D  ++++LI      
Sbjct: 464 NRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNL 523

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       + +EM   G  P++ITYN LLD   + +   +  ++++++ + G+ P++ T 
Sbjct: 524 GRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTN 582

Query: 344 ASLLRAYGRA---RYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFE 399
            +++    +    +  ED L   + +   G   +V  Y  L+ A+C D G   EA  +  
Sbjct: 583 HAIVDNLCKGEKLKMAEDAL---KHLLMHGCSPNVQTYTILINALCKD-GSFGEAMLLLS 638

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
            M+ ++   PD+ TF  +I +   R +  +AE +  EM+  G 
Sbjct: 639 KMEDNDR-PPDAITFEIIIGVLLQRNETDKAEKLREEMIARGL 680



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 131/310 (42%), Gaps = 9/310 (2%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242
           +  +L   M+   V PD+ TF+ LI          +A      M   G  PD +TY++++
Sbjct: 248 EVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALM 307

Query: 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302
           + Y    NV  A  L++R        D   ++ LI  Y      D  + +++E+    + 
Sbjct: 308 EGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLV 367

Query: 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362
           P + +YN+L+D +  + R   VK +  EM  +   P+  TY  L+ A  +     + L V
Sbjct: 368 PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGV 427

Query: 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422
              M +KG++ ++  YN ++         + A +IF  M  S   +PD   ++ +I    
Sbjct: 428 LVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS-GLEPDILNYNVLINGYC 486

Query: 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-- 480
               V EA  +F EM      P++    SLI       R   V   L+ + + G +PD  
Sbjct: 487 KTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVI 546

Query: 481 ------DRFC 484
                 D FC
Sbjct: 547 TYNILLDAFC 556



 Score = 46.2 bits (108), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 1/140 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +VI YN+ +  F K +  DKA  LF  +++ G+ PD  T   ++           A +
Sbjct: 542 SPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAED 600

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + +   GC P+  TY+ +I+A  + G+   A  L  +  +     D   F  +I +  
Sbjct: 601 ALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLL 660

Query: 282 TAGNFDGCLNVYEEMKAIGV 301
                D    + EEM A G+
Sbjct: 661 QRNETDKAEKLREEMIARGL 680


>gi|242050034|ref|XP_002462761.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
 gi|241926138|gb|EER99282.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
          Length = 535

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 159/352 (45%), Gaps = 14/352 (3%)

Query: 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFS 204
           P+ AA    +    L A     LY   + +  K      A  L D+M +R V   +    
Sbjct: 116 PEAAAF-FRHIAASLPADSLPDLYASMIDLLAKHHHFSLARHLLDEMRERAVPISSRLIF 174

Query: 205 TLISCARMNNLPNKAVEWFERMPSFGCD-PDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263
            LI       +P++A + F RM  +G   P+  T +S++ A  +      A  L+D  R 
Sbjct: 175 ALIRRYVRAEMPSEAADLFRRMEEYGSGAPEPATLASLLAALSKKRLASEAQALFDSCRT 234

Query: 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
             +  D   ++ ++  +  AG  D    V+ EM+  G+ PN+ TY  ++D M RA +  +
Sbjct: 235 -VFTPDVVLYTAVVHAWCRAGQLDEAERVFAEMQQSGIMPNVYTYTAVIDAMYRAGQVPR 293

Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL- 382
            + +  +M D+G  PN  T+ +++RA+ +A   E  L V+ +M +   +  +  YN L+ 
Sbjct: 294 AQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMHQLRCEPDIITYNFLIE 353

Query: 383 AMCAD-VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
             C    G  D A ++ + M  ++ C PD  TF+ M  +    G +  A  ++ +M E  
Sbjct: 354 THCGKGQGNLDAALKVLDKM-IAKKCVPDCHTFNPMFRLLVVLGNIGAAHKLYEKMRELQ 412

Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCG 485
            +PN+     L++ + K +  D V+R    +   GI P+        + FCG
Sbjct: 413 CKPNVVTYNCLLKLFNKEKSMDMVLRMKKNMDVEGIEPNMHTYAALIEAFCG 464



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 116/240 (48%), Gaps = 3/240 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V  Y   +    +   + +A+ L   M+D G  P+  TF+ ++          + ++   
Sbjct: 275 VYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHN 334

Query: 225 RMPSFGCDPDALTYSSMIDAY-GRA-GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           +M    C+PD +TY+ +I+ + G+  GN++ A  + D+   +K   D + F+ + +L   
Sbjct: 335 QMHQLRCEPDIITYNFLIETHCGKGQGNLDAALKVLDKMIAKKCVPDCHTFNPMFRLLVV 394

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
            GN      +YE+M+ +  KPN++TYN LL    + K    V  + K M   G+ PN +T
Sbjct: 395 LGNIGAAHKLYEKMRELQCKPNVVTYNCLLKLFNKEKSMDMVLRMKKNMDVEGIEPNMHT 454

Query: 343 YASLLRAY-GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           YA+L+ A+ GR  +     ++   ++EK  + S  + + +L +    G   +  E+ E M
Sbjct: 455 YAALIEAFCGRGNWKRAHATLKEMIEEKSFKPSKQVRDMVLVLLRKAGQLKKHEELVELM 514



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 139/312 (44%), Gaps = 44/312 (14%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA-RMNNLPNKAV 220
           + +V+LY   +  + +   LD+AER+F +M   G+ P+  T++ +I    R   +P +A 
Sbjct: 237 TPDVVLYTAVVHAWCRAGQLDEAERVFAEMQQSGIMPNVYTYTAVIDAMYRAGQVP-RAQ 295

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E   +M   GC P+  T+++++ A+ +AG  E    ++++    +   D   ++ LI+ +
Sbjct: 296 ELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMHQLRCEPDIITYNFLIETH 355

Query: 281 --GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
                GN D  L V ++M A    P+  T+N +   +           +Y++M +    P
Sbjct: 356 CGKGQGNLDAALKVLDKMIAKKCVPDCHTFNPMFRLLVVLGNIGAAHKLYEKMRELQCKP 415

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
           N  TY  LL+ +                KEK M + + +   +     DV          
Sbjct: 416 NVVTYNCLLKLFN---------------KEKSMDMVLRMKKNM-----DV---------- 445

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML-EAGFEPNLFV---LTSLIQ 454
                 E  +P+  T++++I     RG    A A   EM+ E  F+P+  V   +  L++
Sbjct: 446 ------EGIEPNMHTYAALIEAFCGRGNWKRAHATLKEMIEEKSFKPSKQVRDMVLVLLR 499

Query: 455 CYGKAQRTDDVV 466
             G+ ++ +++V
Sbjct: 500 KAGQLKKHEELV 511


>gi|9758456|dbj|BAB08985.1| membrane-associated salt-inducible protein-like [Arabidopsis
           thaliana]
          Length = 949

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 164/356 (46%), Gaps = 8/356 (2%)

Query: 135 CVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
           C+I L       + AL ++    +      +  Y++ +  F K +D   A  +F+DM+  
Sbjct: 489 CLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKE 548

Query: 195 GVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
           G+KPD + ++ +IS  C  M N+ ++A++  + M      P   T+  +I  Y ++G++ 
Sbjct: 549 GMKPDVILYNNIISAFCG-MGNM-DRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMR 606

Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
            +  ++D  R        + F+ LI   G        + + +EM   GV  N  TY  ++
Sbjct: 607 RSLEVFDMMRRCGCVPTVHTFNGLIN--GLVEKRQ-AVEILDEMTLAGVSANEHTYTKIM 663

Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
                     +    +  + + GL  +  TY +LL+A  ++   +  L+V +EM  + + 
Sbjct: 664 QGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIP 723

Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            +  +YN L+   A  G   EA ++ + MK  E  +PD  T++S I+ CS  G ++ A  
Sbjct: 724 RNSFVYNILIDGWARRGDVWEAADLIQQMKK-EGVKPDIHTYTSFISACSKAGDMNRATQ 782

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
              EM   G +PN+   T+LI+ + +A   +  +     +  +GI PD     CLL
Sbjct: 783 TIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLL 838



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 158/376 (42%), Gaps = 17/376 (4%)

Query: 93  KSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALAL 152
           K+Y    N  VKL    ++ +  ED V   ++   D  L  + +     M N D A   +
Sbjct: 520 KTYSMMINGFVKLKDWANAFAVFEDMVKEGMKP--DVILYNNIISAFCGMGNMDRAIQTV 577

Query: 153 TYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARM 212
                KL+       +   +  + K  D+ ++  +FD M   G  P   TF+ LI     
Sbjct: 578 KEM-QKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLI----- 631

Query: 213 NNLPNK--AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP 270
           N L  K  AVE  + M   G   +  TY+ ++  Y   G+   AF  + R +NE   +D 
Sbjct: 632 NGLVEKRQAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDI 691

Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
             +  L+K    +G     L V +EM A  +  N   YN L+D   R    W+   + ++
Sbjct: 692 FTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQ 751

Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
           M   G+ P+ +TY S + A  +A           EM+  G++ ++  Y TL+   A    
Sbjct: 752 MKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASL 811

Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA------EAMFNEMLEAGFEP 444
            ++A   +E+MK+    +PD   +  ++T    R  ++EA        +  EM+EAG   
Sbjct: 812 PEKALSCYEEMKAM-GIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIV 870

Query: 445 NLFVLTSLIQCYGKAQ 460
           ++       +C  K +
Sbjct: 871 DMGTAVHWSKCLCKIE 886



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 153/350 (43%), Gaps = 12/350 (3%)

Query: 143 TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVT 202
           TN D     ++ F    K S+    + + +K + +  D+ +A   F+ M  RG+ P +  
Sbjct: 289 TNGDNWQAVISAFEKISKPSR--TEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRI 346

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           +++LI    +    ++A+    +M   G +   +TYS ++  + +AG+ E A   +D A+
Sbjct: 347 YTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAK 406

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
                ++ + +  +I  +    N +    +  EM+  G+   +  Y+ ++D         
Sbjct: 407 RIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEK 466

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +   ++K + + G +P   TY  L+  Y +       L V R MKE+G++ ++  Y+ ++
Sbjct: 467 KGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMI 526

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
                +     AF +FEDM   E  +PD   ++++I+     G +  A     EM +   
Sbjct: 527 NGFVKLKDWANAFAVFEDM-VKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRH 585

Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
            P       +I  Y K   + D+ R+L     +      R CGC+  V T
Sbjct: 586 RPTTRTFMPIIHGYAK---SGDMRRSLEVFDMM------RRCGCVPTVHT 626


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 147/327 (44%), Gaps = 4/327 (1%)

Query: 155 FTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNN 214
           F +++ A + +  Y   +  +    DL  ++R    +L  G  PD+  +++ +       
Sbjct: 63  FASRMPA-RNLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAG 121

Query: 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFS 274
           L   A   F  MP  GC   A TY++++     AG V  A  ++   + +    DP+ ++
Sbjct: 122 LLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYA 181

Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
           T++     AG       +  +  A G +PN++ YN L+D             +++ M  N
Sbjct: 182 TMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVN 241

Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDE 393
           G SPN  TY  L+  + ++R  +  + ++  M + G+  +V  Y  L+   C+D G  D 
Sbjct: 242 GCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSD-GQLDC 300

Query: 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453
           A+ + + M++S    P+ WT S +I       +V EA+ +   +++ G + N  V TSLI
Sbjct: 301 AYRLLQSMENS-GLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLI 359

Query: 454 QCYGKAQRTDDVVRALNRLPELGITPD 480
               KA R     R +  L   G  PD
Sbjct: 360 DGLCKAGRFAAADRLMQTLVSQGFVPD 386



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 147/330 (44%), Gaps = 3/330 (0%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V++YN  +  +    DL+ A  +F+ M   G  P+  T++ LIS    +   ++A+  F 
Sbjct: 212 VVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFS 271

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           RM   G  P+ +TY+++I      G ++ A+ L     N     +    S LI       
Sbjct: 272 RMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHE 331

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                  +   +   G+K N I Y +L+D + +A R      + + +   G  P+ +TY+
Sbjct: 332 RVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYS 391

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKS 403
           SL+    R +   + + V  +M EKG+Q S   Y  ++  +  +VG  D + +I + M +
Sbjct: 392 SLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVG-ADGSKKILDKMIA 450

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
           +   +PD +T++  +      G++ +AE M   M++ G  PNL    +LI  Y     T 
Sbjct: 451 A-GIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTS 509

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
                   +   G  P++     LL ++ +
Sbjct: 510 QAFSTFKHMVANGCKPNEESYTVLLRLLIK 539



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 147/345 (42%), Gaps = 40/345 (11%)

Query: 174 VFRKCRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
           V   CR   L  A RLF  M  RG      T++ L+       +  +A+  F  M + GC
Sbjct: 114 VVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGC 173

Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
            PD   Y++M+     AG    A  L   A  E +  +   ++ LI  Y   G+ +  ++
Sbjct: 174 APDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVD 233

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR--- 348
           V+E M   G  PN+ TY  L+    ++++  +   ++  M D GL PN  TY +L++   
Sbjct: 234 VFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQC 293

Query: 349 -------AY--------------------------GRARYGEDTLSVYREMKEKGMQLSV 375
                  AY                             R GE  L +   + +KG++++ 
Sbjct: 294 SDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQL-LLGSLIQKGIKVNE 352

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
            +Y +L+      G    A  + + +  S+   PD+ T+SS+I     + ++SEA  + +
Sbjct: 353 IVYTSLIDGLCKAGRFAAADRLMQTL-VSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLD 411

Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +M+E G +P+    T +I    +    D   + L+++   GI PD
Sbjct: 412 DMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPD 456



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 144/301 (47%), Gaps = 18/301 (5%)

Query: 206 LISCARMNNLPNKAVEWF-ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
           L++ AR   L +  +E F  RMP+     +  TY+++I+AY  AG++  +          
Sbjct: 48  LMALARHRMLAD--MESFASRMPA----RNLRTYTTLINAYCLAGDLPASKRHLSSLLRA 101

Query: 265 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324
            +  D +A+++ +  Y  AG       ++  M   G      TY  LL  +  A    + 
Sbjct: 102 GFAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREA 161

Query: 325 KTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
            +++  M  +G +P+ + YA+++      GR R  E  LS   +   +G + +V +YN L
Sbjct: 162 MSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLS---DAMAEGFEPNVVVYNAL 218

Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEA 440
           +    +VG  + A ++FE M  +  C P+  T++ +I+  C  R K+  A  +F+ M++A
Sbjct: 219 IDGYCNVGDLELAVDVFERMDVN-GCSPNVRTYTELISGFCKSR-KLDRAMMLFSRMVDA 276

Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
           G  PN+   T+LIQ      + D   R L  +   G+ P++  C  L++ + +   E +G
Sbjct: 277 GLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCK--HERVG 334

Query: 501 K 501
           +
Sbjct: 335 E 335



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 137/304 (45%), Gaps = 1/304 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S  V  Y   +  F K R LD+A  LF  M+D G+ P+ VT++ LI     +   + A  
Sbjct: 244 SPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYR 303

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
             + M + G  P+  T S +IDA  +   V  A  L      +  +++   +++LI    
Sbjct: 304 LLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLC 363

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            AG F     + + + + G  P+  TY++L+D + R K   +   +  +M + G+ P+  
Sbjct: 364 KAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPV 423

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY  ++    R    + +  +  +M   G++  V  Y   +      G  ++A  +   M
Sbjct: 424 TYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHM 483

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
                C P+  T++++I   +  G  S+A + F  M+  G +PN    T L++   K + 
Sbjct: 484 VDHGVC-PNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKES 542

Query: 462 TDDV 465
           ++++
Sbjct: 543 SNNI 546



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 134/298 (44%), Gaps = 19/298 (6%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I+Y   +    K      A+RL   ++ +G  PD  T+S+LI         ++A+   + 
Sbjct: 353 IVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDD 412

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P  +TY+ +ID   R    + +  + D+      + D   ++  ++ Y   G 
Sbjct: 413 MMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGR 472

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +   ++   M   GV PN++TYN L+          Q  + +K M  NG  PN  +Y  
Sbjct: 473 MEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTV 532

Query: 346 LLRAYGRARYGE----DTLSVYR--EMK------EKGMQLS----VTLYNTLLAMCADVG 389
           LLR   +         +++S+++  EMK      E+ ++L     + +YN  L     V 
Sbjct: 533 LLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVD 592

Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNL 446
             DEA  +  +M+S+ N  P    ++S+I  C CR K ++EA    + M+++G+ P L
Sbjct: 593 RLDEAKILLIEMQSA-NLTPSEDVYTSIIA-CCCRLKMLTEALTFVDSMVKSGYIPQL 648



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 116/281 (41%), Gaps = 19/281 (6%)

Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           D ++++ D M+  G+KPD  T++  +           A      M   G  P+ +TY+++
Sbjct: 439 DGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNAL 498

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY---GTAGNFDG---------- 288
           I  Y   G    AF  +        + +  +++ L++L     ++ N             
Sbjct: 499 ICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAE 558

Query: 289 ---CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                 + EEM  + +   +  YN  L ++ R  R  + K +  EM    L+P+ + Y S
Sbjct: 559 MKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTS 618

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++    R +   + L+    M + G    +  Y  +++   + G    A ++F DM S E
Sbjct: 619 IIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKE 678

Query: 406 -NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            N +  +W    +I     +G V+E  ++ + M E  + P+
Sbjct: 679 YNYEEIAWRI--LIDGLLQKGYVAECSSLLSVMEEKNYRPS 717



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/154 (19%), Positives = 68/154 (44%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           KL+   E+ +YN  +    +   LD+A+ L  +M    + P    ++++I+C     +  
Sbjct: 571 KLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLT 630

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           +A+ + + M   G  P   +Y  +I +    G+++ A  ++    ++++  +  A+  LI
Sbjct: 631 EALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILI 690

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
                 G    C ++   M+    +P+   Y  L
Sbjct: 691 DGLLQKGYVAECSSLLSVMEEKNYRPSDALYARL 724


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 163/384 (42%), Gaps = 38/384 (9%)

Query: 134 DCVIILNNMTNPDTA--ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDM 191
           +C ++LN + +  +   AL L           +V+ YN  +K     +     + L ++M
Sbjct: 194 NCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEM 253

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
           +     P+ VTF+TLIS    N L  +  E   +M   GC PD   Y+++ID   + G++
Sbjct: 254 VRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHL 313

Query: 252 EMAFGLYDRARN--------------------EKWR---------------IDPNAFSTL 276
           E+A  + +R  +                    E+W                +D   F+ L
Sbjct: 314 EVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNIL 373

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
           +  +   G  D  + + E+M   G  P++ITY  +++   +     +   + K MT  G 
Sbjct: 374 VDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGC 433

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            PN  +Y  +L+    A    D   +  +M ++G  L+   +NTL+      G  ++A E
Sbjct: 434 KPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIE 493

Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
           + + M  +  C PD  ++S++I      GK  EA  + N M+  G  PN  + +S+    
Sbjct: 494 LLKQMLVN-GCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASAL 552

Query: 457 GKAQRTDDVVRALNRLPELGITPD 480
            +  R + V++  + + +  I  D
Sbjct: 553 SREGRINKVIQMFDNIQDTTIRSD 576



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 136/276 (49%), Gaps = 1/276 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +N+ +  F +   +D+   L + ML+RG  PD +T++T+I+      L ++AV   + 
Sbjct: 368 VTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 427

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M + GC P+ ++Y+ ++     A     A  L  +   +   ++P  F+TLI      G 
Sbjct: 428 MTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGL 487

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  + + ++M   G  P++I+Y+ ++D +G+A +  +   +   M + G+SPN   Y+S
Sbjct: 488 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSS 547

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           +  A  R       + ++  +++  ++    LYN +++     G T+ A E    M SS 
Sbjct: 548 IASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSS- 606

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
            C P+  T++ +I   +  G V EA+ M  E+   G
Sbjct: 607 GCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 642



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 135/317 (42%), Gaps = 36/317 (11%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  +K        ++ E L  +M D+    D+VTF+ L+     N L ++ +E  E
Sbjct: 332 VVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLE 391

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M   GC PD +TY+++I+ + + G ++ A  L                           
Sbjct: 392 QMLERGCMPDVITYTTVINGFCKEGLIDEAVMLL-------------------------- 425

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
                    + M A G KPN I+Y  +L  +  A+R    + +  +M   G   N  T+ 
Sbjct: 426 ---------KSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFN 476

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+    +    E  + + ++M   G    +  Y+T++      G TDEA E+   M  +
Sbjct: 477 TLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVM-VN 535

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
           +   P++  +SS+ +  S  G++++   MF+ + +     +  +  ++I    K   T+ 
Sbjct: 536 KGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETER 595

Query: 465 VVRALNRLPELGITPDD 481
            +  L  +   G  P++
Sbjct: 596 AIEFLAYMVSSGCVPNE 612



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 136/349 (38%), Gaps = 41/349 (11%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFER 225
           YN  +  + +   L+ A RL   +    V P+  T+  ++   CAR       A+   + 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCAR--GRIADALAVLDE 147

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           MP  GC P    Y  +++A  R G    A  + +        +D    + ++      G+
Sbjct: 148 MPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGS 207

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            D  L++  ++ + G +P++++YN +L  +  AKR   V+ + +EM      PN  T+ +
Sbjct: 208 VDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNT 267

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS-- 403
           L+    R    E    V  +M E G    + +Y T++      G+ + A EI   M S  
Sbjct: 268 LISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYG 327

Query: 404 --------------------------------SENCQPDSWTFSSMITICSCRGKVSEAE 431
                                            ++C  D  TF+ ++      G V    
Sbjct: 328 LKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVI 387

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            +  +MLE G  P++   T++I  + K    D+ V  L  +   G  P+
Sbjct: 388 ELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPN 436



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
           D A   L    NK  +   +I  ++   + R+ R ++K  ++FD++ D  ++ D V ++ 
Sbjct: 524 DEALELLNVMVNKGMSPNTIIYSSIASALSREGR-INKVIQMFDNIQDTTIRSDAVLYNA 582

Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
           +IS         +A+E+   M S GC P+  TY+ +I      G V+ A
Sbjct: 583 VISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEA 631



 Score = 42.7 bits (99), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/123 (20%), Positives = 57/123 (46%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S ++I Y+  +    K    D+A  L + M+++G+ P+ + +S++ S        NK ++
Sbjct: 504 SPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQ 563

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F+ +       DA+ Y+++I +  + G  E A        +     + + ++ LI+   
Sbjct: 564 MFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLA 623

Query: 282 TAG 284
           + G
Sbjct: 624 SEG 626


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 181/420 (43%), Gaps = 45/420 (10%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V  YN  +  F K   +D A ++FD M  RG  PD VT++ +I           A E  
Sbjct: 130 DVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVM 189

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           + +   GC P  +TY+ +I+A    G +  A  L+D   +   R D   ++ +I+     
Sbjct: 190 DELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKE 249

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D  L+    + A G  P++++YN LL +     R    + + K+M  +G  PN  T+
Sbjct: 250 GMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTH 309

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGM------------------QLSVTL-------- 377
           + L+ ++ R     + ++V   MKEKG+                  +L + +        
Sbjct: 310 SILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVS 369

Query: 378 ---------YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKV 427
                    YNT+LA     G  D A ++FE +     C P    +++M + + SC  K+
Sbjct: 370 DGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEV-GCPPTVRAYNTMFSALWSCGNKI 428

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
              E M +EM+  G +P+     SLI C  +    D+ +  L  +      P       +
Sbjct: 429 KALE-MISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIV 487

Query: 488 LNVMTQTPK--EELGKLVECVEKS--NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543
           L  M +  +  E +  L+  VEK    ++  YV  LL+E     G ++ EA EL NS+ +
Sbjct: 488 LLGMCKAHRVFEGIELLITMVEKGCLPNETSYV--LLIEGIAYAG-WRAEAMELANSLYR 544



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 142/307 (46%), Gaps = 4/307 (1%)

Query: 176 RKCRDLDKAERLF--DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDP 233
           R CR     E L+  + ++ +G KPD V  + LI     +    KA+   E + ++G DP
Sbjct: 71  RSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG-DP 129

Query: 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293
           D  +Y++MI  + +A  ++ A  ++DR R+  +  D   ++ +I    + G  +    V 
Sbjct: 130 DVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVM 189

Query: 294 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353
           +E+   G KP++ITY  L++      R  +   ++ E+   GL P+  TY +++R   + 
Sbjct: 190 DELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKE 249

Query: 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413
              +  L   R +  +G    V  YN LL    +    ++   + +DM  S  C+P+  T
Sbjct: 250 GMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLS-GCEPNVVT 308

Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
            S +I+     G+V EA  +   M E G  P+ +    LI  + K  R D  +  L ++ 
Sbjct: 309 HSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMV 368

Query: 474 ELGITPD 480
             G  PD
Sbjct: 369 SDGCLPD 375


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 168/368 (45%), Gaps = 11/368 (2%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + +NV +    K  DL +A +L D+M  +G  P+ VT+++L+    +    +KA+    R
Sbjct: 246 VAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNR 305

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M +  C P+ +T+ +++D + + G       +      + +R +  ++S+LI      G 
Sbjct: 306 MVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGK 365

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  + +++EM   G KPN I Y+ L+D + R  +P + K    EM + G +PN  TY+S
Sbjct: 366 GEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSS 425

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+  Y  A      + V++EM +         Y+ L+      G   EA  +++ M  S 
Sbjct: 426 LMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQM-LSR 484

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEML--EAGFEPNLFVLTSLIQCYGKAQRTD 463
             + D   +SSMI        V +   +FN+ML      +P++     L+  +       
Sbjct: 485 GIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVS 544

Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMT------QTPKEELGKLVECVEKSNSKLGY-- 515
             +  LN + + G  PD   C   L  +       Q  +E L +LV  + K    +G   
Sbjct: 545 RAIDILNTMLDQGCDPDFITCDIFLKTLRDNMDPPQDGREFLDELVVRLIKRQRTVGASN 604

Query: 516 VVKLLLEE 523
           +++++L++
Sbjct: 605 IIEVMLQK 612



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 196/438 (44%), Gaps = 28/438 (6%)

Query: 42  QKRSVSLQETQSSN--PTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRY 99
           Q  +++     SSN   T HS  PQ    K+ S+  S+ W       + KL + S+   Y
Sbjct: 21  QTLTLTFLSYSSSNLPHTHHSLPPQI--FKSPSNTSSHKW------GSYKLGDLSF---Y 69

Query: 100 NSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTN-- 157
           + +   +  LD  S   + +   ++C    F+E+  +I+            AL  F    
Sbjct: 70  SLIENFSNSLDFTSL--EQLLHQMKCENRVFIEKSFIIMFKAYGKAHLPQKALDLFHRMG 127

Query: 158 -KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG----VKPDNVTFSTLI-SCAR 211
            +    + V  +N  + V  +    D A   ++ ++D      ++P+ ++F+ +I +  R
Sbjct: 128 AEFHCKQTVKSFNTVLNVVIQEGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCR 187

Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
           + N+ ++AVE F  M    C  D  TYS+++      G ++ A  L D  + E    +P 
Sbjct: 188 VGNV-DQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPV 246

Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
           AF+ LI      G+      + + M   G  PN +TYN+L+  +    +  +  ++   M
Sbjct: 247 AFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRM 306

Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
             N   PN  T+ +L+  + +     D + V   ++EKG + +   Y++L++     G  
Sbjct: 307 VANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKG 366

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           +   +++++M   + C+P++  +S++I      GK  EA+    EM   G  PN F  +S
Sbjct: 367 EHGMQLWKEM-VEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSS 425

Query: 452 LIQCYGKAQRTDDVVRAL 469
           L+  Y +A    D+ +A+
Sbjct: 426 LMWGYFEA---GDIHKAI 440



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 110/259 (42%), Gaps = 6/259 (2%)

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
           L++ S+I+ +  + +      L  + + E       +F  + K YG A      L+++  
Sbjct: 66  LSFYSLIENFSNSLDFTSLEQLLHQMKCENRVFIEKSFIIMFKAYGKAHLPQKALDLFHR 125

Query: 296 MKA-IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG----LSPNWNTYASLLRAY 350
           M A    K  + ++N +L+ + +          Y  + D+     + PN  ++  +++A 
Sbjct: 126 MGAEFHCKQTVKSFNTVLNVVIQEGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKAL 185

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
            R    +  + V+R M ++        Y+TL+    + G  DEA  + ++M+  E   P+
Sbjct: 186 CRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQV-EGTFPN 244

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
              F+ +I+    +G +S A  + + M   G  PN     SL+       + D  +  LN
Sbjct: 245 PVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLN 304

Query: 471 RLPELGITPDDRFCGCLLN 489
           R+      P+D   G L++
Sbjct: 305 RMVANKCVPNDITFGTLVD 323


>gi|111154024|dbj|BAF02664.1| pentatricopeptide repeat protein [Physcomitrella patens]
 gi|111185880|dbj|BAF02672.1| pentatricopeptide repeat protein [Physcomitrella patens]
          Length = 531

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 165/370 (44%), Gaps = 28/370 (7%)

Query: 129 DFLEQDCVIILNNMTNPDTAAL----------ALTYFTNKLKAS--KEVILYNVTMKVFR 176
           D+LE D    LN++ + ++A L          A+T F     A    +V+ Y   ++ F 
Sbjct: 134 DYLEDDSQ--LNSVKDYNSALLNCVKDGRMRDAMTIFKRFEGAGLKPDVVSYTALIQGFG 191

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K +  +K   +F  M      PD    + LIS      LP  A    +   + G  PDA+
Sbjct: 192 KLKSYNKVTDVFSRMQRNRCPPDLKLCTVLISTYGNGGLPVLAESAMQYAQAQGLQPDAI 251

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARN------EKWRIDPNAFSTLIKLYGTAGNFDGCL 290
            Y++++ AY + G       L++ A        +   +D   ++ L+  YG AG  D   
Sbjct: 252 AYTALVHAYAQEG-------LWEEAEKTLSDMLDVGIVDDRPYAALVAAYGKAGLTDNVN 304

Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
            + E MKA GV+ +   YN L++   +A+ P + + + + M  +G   +  TY S++ AY
Sbjct: 305 KILETMKASGVEASTTLYNTLINIHSKAEAPEKARAVLQLMQADGCQCDEITYTSVMEAY 364

Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
            R +      S+  EMK  G+Q     Y  L++     G   +A  I   M++++ C+P 
Sbjct: 365 SRNKQPLMAESMMGEMKRAGIQPGPVSYGVLISAYCRAGRLGDAERILRAMQNAK-CKPT 423

Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
              ++ MI+  +     S+AE MF  M + G  P+     +LI  Y K+++         
Sbjct: 424 VEIYNMMISGYASAKMRSQAERMFQTMQDCGLRPDAVTFNTLISMYIKSRKRKQAEDCYI 483

Query: 471 RLPELGITPD 480
           R+ +LG  P+
Sbjct: 484 RMQQLGCKPN 493



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 103/237 (43%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y   +  + K    D   ++ + M   GV+     ++TLI+       P KA    + M 
Sbjct: 287 YAALVAAYGKAGLTDNVNKILETMKASGVEASTTLYNTLINIHSKAEAPEKARAVLQLMQ 346

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
           + GC  D +TY+S+++AY R     MA  +    +    +  P ++  LI  Y  AG   
Sbjct: 347 ADGCQCDEITYTSVMEAYSRNKQPLMAESMMGEMKRAGIQPGPVSYGVLISAYCRAGRLG 406

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               +   M+    KP +  YN ++     AK   Q + +++ M D GL P+  T+ +L+
Sbjct: 407 DAERILRAMQNAKCKPTVEIYNMMISGYASAKMRSQAERMFQTMQDCGLRPDAVTFNTLI 466

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
             Y ++R  +     Y  M++ G + +   Y  LL    D   + +A  I  DM+ +
Sbjct: 467 SMYIKSRKRKQAEDCYIRMQQLGCKPNAVTYKILLKAYTDYNNSIDAERIRLDMRKA 523



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 94/207 (45%)

Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
           LYN  + +  K    +KA  +   M   G + D +T+++++     N  P  A      M
Sbjct: 321 LYNTLINIHSKAEAPEKARAVLQLMQADGCQCDEITYTSVMEAYSRNKQPLMAESMMGEM 380

Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
              G  P  ++Y  +I AY RAG +  A  +    +N K +     ++ +I  Y +A   
Sbjct: 381 KRAGIQPGPVSYGVLISAYCRAGRLGDAERILRAMQNAKCKPTVEIYNMMISGYASAKMR 440

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
                +++ M+  G++P+ +T+N L+    ++++  Q +  Y  M   G  PN  TY  L
Sbjct: 441 SQAERMFQTMQDCGLRPDAVTFNTLISMYIKSRKRKQAEDCYIRMQQLGCKPNAVTYKIL 500

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQL 373
           L+AY       D   +  +M++ G+ L
Sbjct: 501 LKAYTDYNNSIDAERIRLDMRKAGISL 527



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%)

Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
           K    V +YN+ +  +   +   +AER+F  M D G++PD VTF+TLIS    +    +A
Sbjct: 419 KCKPTVEIYNMMISGYASAKMRSQAERMFQTMQDCGLRPDAVTFNTLISMYIKSRKRKQA 478

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAY 245
            + + RM   GC P+A+TY  ++ AY
Sbjct: 479 EDCYIRMQQLGCKPNAVTYKILLKAY 504



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 85/196 (43%), Gaps = 2/196 (1%)

Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
           YN+ L    +  R     TI+K     GL P+  +Y +L++ +G+ +       V+  M+
Sbjct: 148 YNSALLNCVKDGRMRDAMTIFKRFEGAGLKPDVVSYTALIQGFGKLKSYNKVTDVFSRMQ 207

Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
                  + L   L++   + G    A E       ++  QPD+  +++++   +  G  
Sbjct: 208 RNRCPPDLKLCTVLISTYGNGGLPVLA-ESAMQYAQAQGLQPDAIAYTALVHAYAQEGLW 266

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
            EAE   ++ML+ G   +     +L+  YGKA  TD+V + L  +   G+         L
Sbjct: 267 EEAEKTLSDMLDVGIVDDR-PYAALVAAYGKAGLTDNVNKILETMKASGVEASTTLYNTL 325

Query: 488 LNVMTQTPKEELGKLV 503
           +N+ ++    E  + V
Sbjct: 326 INIHSKAEAPEKARAV 341



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 60/136 (44%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           + Y V +  + +   L  AER+   M +   KP    ++ +IS      + ++A   F+ 
Sbjct: 390 VSYGVLISAYCRAGRLGDAERILRAMQNAKCKPTVEIYNMMISGYASAKMRSQAERMFQT 449

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  PDA+T++++I  Y ++   + A   Y R +    + +   +  L+K Y    N
Sbjct: 450 MQDCGLRPDAVTFNTLISMYIKSRKRKQAEDCYIRMQQLGCKPNAVTYKILLKAYTDYNN 509

Query: 286 FDGCLNVYEEMKAIGV 301
                 +  +M+  G+
Sbjct: 510 SIDAERIRLDMRKAGI 525



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 5/101 (4%)

Query: 394 AFEIFEDMKSSENCQPDSWT-----FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
           AF I +   SS+  + DS       ++S +  C   G++ +A  +F     AG +P++  
Sbjct: 123 AFTIVQATSSSDYLEDDSQLNSVKDYNSALLNCVKDGRMRDAMTIFKRFEGAGLKPDVVS 182

Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
            T+LIQ +GK +  + V    +R+      PD + C  L++
Sbjct: 183 YTALIQGFGKLKSYNKVTDVFSRMQRNRCPPDLKLCTVLIS 223


>gi|298705285|emb|CBJ48975.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 674

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/424 (23%), Positives = 188/424 (44%), Gaps = 38/424 (8%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           ++Y+  +    +     KA +L   M   G+ P  VT++T+IS    +   + AV   + 
Sbjct: 181 VIYSTVISACERSDQWQKAVKLLRTMRRDGILPVTVTYNTVISACGKSGQWSLAVSLLDE 240

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   GC P  +T++S + A  RA        + D+ + ++  +D  A++T I   G  G 
Sbjct: 241 MSDMGCPPGPVTFASAMLACERARQWHHVLRIMDQMQEDEVWVDKYAYTTAIHAAGQLGK 300

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
           +  C+   +EM + GV  +++T +  +       +  Q + + ++M D+GL+PN  TY S
Sbjct: 301 WARCVRYLDEMDSNGVAKDVVTVSVAISACADKGQWAQAEKLLEDMLDDGLTPNVITYTS 360

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+    R    E  + +   M+ KG+  +V  Y+  +A CAD      A  + ++M+  E
Sbjct: 361 LMVVLRRGGQHERAIKILDLMRSKGVMPNVRTYSVAIAACADAKEWRRALALLKEME-RE 419

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL-TSLIQCYGKAQRTDD 464
              P+  ++++ I  C   G++SEA  + +EM   G + ++    T++  C    QR  D
Sbjct: 420 GVSPNEISYNTAIRACGDAGQLSEALDLMDEMESRGVKASVVTYGTAVAAC----QRAAD 475

Query: 465 VVRALNRLPEL---GITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLL 521
              AL  L  +    I P++   G ++                   K+    G   K L+
Sbjct: 476 WKMALELLAAMRREQIEPNEIVYGGII-------------------KACCAAGQASKALV 516

Query: 522 EEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 581
           +   IE     EA +LFN +     +A  NC + +     L++   + L     + ++ +
Sbjct: 517 DADQIE-----EAIQLFNKL-----QARRNCSVTIHSYTPLVDALTRELRWQEAIMLFQE 566

Query: 582 IQSR 585
           ++ R
Sbjct: 567 MEDR 570



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 147/320 (45%), Gaps = 39/320 (12%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDML-DRGVKPDNVTFSTLIS-CARMNNLPNKAVEW 222
           V+ YN  +      +   +AE +F +M  +RG++P+  T+  LIS CA+  N  + +V +
Sbjct: 109 VVSYNNVITACANAKKQKRAEGIFREMTKERGIRPNVFTYGALISACAKRGNWED-SVNY 167

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
            E+M   G  P+A+ YS++I A                 R+++W+         +KL  T
Sbjct: 168 LEQMRQSGLAPNAVIYSTVISAC---------------ERSDQWQ-------KAVKLLRT 205

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
                        M+  G+ P  +TYN ++   G++ +     ++  EM+D G  P   T
Sbjct: 206 -------------MRRDGILPVTVTYNTVISACGKSGQWSLAVSLLDEMSDMGCPPGPVT 252

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           +AS + A  RAR     L +  +M+E  + +    Y T +     +G         ++M 
Sbjct: 253 FASAMLACERARQWHHVLRIMDQMQEDEVWVDKYAYTTAIHAAGQLGKWARCVRYLDEMD 312

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           S+     D  T S  I+ C+ +G+ ++AE +  +ML+ G  PN+   TSL+    +  + 
Sbjct: 313 SN-GVAKDVVTVSVAISACADKGQWAQAEKLLEDMLDDGLTPNVITYTSLMVVLRRGGQH 371

Query: 463 DDVVRALNRLPELGITPDDR 482
           +  ++ L+ +   G+ P+ R
Sbjct: 372 ERAIKILDLMRSKGVMPNVR 391



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 133/311 (42%), Gaps = 29/311 (9%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           +K+V+  +V +          +AE+L +DMLD G+ P+ +T+++L+   R      +A++
Sbjct: 317 AKDVVTVSVAISACADKGQWAQAEKLLEDMLDDGLTPNVITYTSLMVVLRRGGQHERAIK 376

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKL 279
             + M S G  P+  TYS  I A   A     A  L      E   + PN  +++T I+ 
Sbjct: 377 ILDLMRSKGVMPNVRTYSVAIAACADAKEWRRALALLKEMEREG--VSPNEISYNTAIRA 434

Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
            G AG     L++ +EM++ GVK +++TY   +    RA        +   M    + PN
Sbjct: 435 CGDAGQLSEALDLMDEMESRGVKASVVTYGTAVAACQRAADWKMALELLAAMRREQIEPN 494

Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
              Y  +++A   A      L                          D    +EA ++F 
Sbjct: 495 EIVYGGIIKACCAAGQASKAL-------------------------VDADQIEEAIQLFN 529

Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
            +++  NC     +++ ++   +   +  EA  +F EM +    P +   TS+++   ++
Sbjct: 530 KLQARRNCSVTIHSYTPLVDALTRELRWQEAIMLFQEMEDRKIMPTVQCYTSVVRACERS 589

Query: 460 QRTDDVVRALN 470
            + D  +R L+
Sbjct: 590 GQYDVALRLLD 600



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 95/248 (38%), Gaps = 36/248 (14%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           ALAL     +   S   I YN  ++       L +A  L D+M  RGVK   VT+ T ++
Sbjct: 409 ALALLKEMEREGVSPNEISYNTAIRACGDAGQLSEALDLMDEMESRGVKASVVTYGTAVA 468

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
             +       A+E    M     +P+ + Y  +I A   AG    A             +
Sbjct: 469 ACQRAADWKMALELLAAMRREQIEPNEIVYGGIIKACCAAGQASKAL------------V 516

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D +     I+L+        C               + +Y  L+D + R  R  +   ++
Sbjct: 517 DADQIEEAIQLFNKLQARRNC------------SVTIHSYTPLVDALTRELRWQEAIMLF 564

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
           +EM D  + P    Y S++RA  R+   +  L +  +M++K M+              D+
Sbjct: 565 QEMEDRKIMPTVQCYTSVVRACERSGQYDVALRLLDDMRKKRMRFY------------DI 612

Query: 389 GYTDEAFE 396
           G  DE F+
Sbjct: 613 GILDELFK 620


>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 157/318 (49%), Gaps = 4/318 (1%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ YN  M    + +++D A  +F +ML++G+KP+N T+S LI     N+     +E   
Sbjct: 477 VVSYNNVMLAHCRKKNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVN 536

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK-WRIDPNAFSTLIKLYGTA 283
           +M S   + + + Y ++I+   + G    A  L      EK + +   +++++I  +   
Sbjct: 537 QMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIIDGFIKE 596

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  D  +  YEEM A G+ PN+ITY +L+D + +  R  Q   +  EM + G+  +   Y
Sbjct: 597 GEMDYAVAAYEEMCANGISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAY 656

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-K 402
            +L+  + +    E   +++ E+ E+G+  S  +YN+L++   ++G    A ++++ M K
Sbjct: 657 GALIHGFCKKSNMESASALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLK 716

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
               C  D  T++++I      G +  A  ++ EM   G  P+  + T ++    K  + 
Sbjct: 717 DGLRC--DLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQF 774

Query: 463 DDVVRALNRLPELGITPD 480
             VV+    + +  +TP+
Sbjct: 775 VKVVKMFEEMKKNNVTPN 792



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 145/315 (46%), Gaps = 5/315 (1%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
           K  DL  A  LF  M + G  P++VTFS LI     N    KA+E++++M S G  P   
Sbjct: 350 KNNDLGSALDLFYKMENEGPSPNSVTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVF 409

Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYE 294
              ++I  + +    E A  L+D +         N F  +T++      G  D    +  
Sbjct: 410 HVHTIIQGWLKGQKHEEALKLFDESFETGL---ANVFICNTILSWLCKQGKIDKATELLR 466

Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
           +M++ G+ PN+++YNN++    R K     +T++  M + GL PN  TY+ L+    +  
Sbjct: 467 KMESRGIGPNVVSYNNVMLAHCRKKNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFKNH 526

Query: 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414
             ++ L V  +M    ++++  +Y T++     VG T +A E+  +M   +       ++
Sbjct: 527 DEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRFCVSCMSY 586

Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
           +S+I      G++  A A + EM   G  PN+   TSL+    K  R D  +   + +  
Sbjct: 587 NSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSLMDGLCKNNRMDQALEMRDEMKN 646

Query: 475 LGITPDDRFCGCLLN 489
            G+  D    G L++
Sbjct: 647 KGVKLDIPAYGALIH 661



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 152/333 (45%), Gaps = 14/333 (4%)

Query: 109 LDSCSATEDD--VFSVLRCLGDDFLEQDCVI---ILNNMTNPDTAALALTYFTNKLKASK 163
           +D C    D+  V  V+  +    +E + V+   I+N +      + A     N ++  +
Sbjct: 519 IDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKR 578

Query: 164 ---EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
                + YN  +  F K  ++D A   +++M   G+ P+ +T+++L+     NN  ++A+
Sbjct: 579 FCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSLMDGLCKNNRMDQAL 638

Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
           E  + M + G   D   Y ++I  + +  N+E A  L+     E        +++LI  +
Sbjct: 639 EMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEEGLNPSQPVYNSLISGF 698

Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
              GN    L++Y++M   G++ ++ TY  L+D + +         +Y EM   GL P+ 
Sbjct: 699 RNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLVPDE 758

Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
             Y  ++    +       + ++ EMK+  +  +V +YN ++A     G  DEAF + ++
Sbjct: 759 IMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDE 818

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           M   +   PD  TF  +++     GKV + + +
Sbjct: 819 ML-DKGILPDGATFDILVS-----GKVGKFQPI 845



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 158/329 (48%), Gaps = 10/329 (3%)

Query: 183 KAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
           +A  +F   ++RG +PD++ +S  + +C +  NL        E      C P   TY+S+
Sbjct: 250 EALEVFSRAIERGAEPDSLLYSLAVQACCKTLNLAMANSLLREMKEKKLCVPSQETYTSV 309

Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
           I A  + GN+E A    D   ++   ++  A ++LI  +    +    L+++ +M+  G 
Sbjct: 310 ILASVKQGNMEDAIRWKDEMVSDGISMNVVAATSLITGHCKNNDLGSALDLFYKMENEGP 369

Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
            PN +T++ L++   +     +    YK+M   GL+P+     ++++ + + +  E+ L 
Sbjct: 370 SPNSVTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQKHEEALK 429

Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
           ++ E  E G+  +V + NT+L+     G  D+A E+   M+ S    P+  ++++ + + 
Sbjct: 430 LFDESFETGLA-NVFICNTILSWLCKQGKIDKATELLRKME-SRGIGPNVVSYNN-VMLA 486

Query: 422 SCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
            CR K +  A  +F+ MLE G +PN +  + LI    K     +V+  +N++    I  +
Sbjct: 487 HCRKKNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNIEVN 546

Query: 481 DRFCGCLLNVM-----TQTPKEELGKLVE 504
                 ++N +     T   +E L  ++E
Sbjct: 547 GVVYQTIINGLCKVGQTSKARELLANMIE 575



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 133/320 (41%), Gaps = 9/320 (2%)

Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
           L D A+   + ++  AF+ L+  Y      D  +++  +M  +GV P +   N  L  + 
Sbjct: 149 LVDSAKLFGFEVNSRAFNYLLNAYSKDRQTDYAVDIVNQMLELGVIPFVPYVNRTLSALV 208

Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
           +     + K +Y  M   G+  +  T   L+RA  R     + L V+    E+G +    
Sbjct: 209 QRNSITEAKELYSRMVAIGVDGDNGTTQLLMRASLREEKPAEALEVFSRAIERGAEPDSL 268

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
           LY+  +  C        A  +  +MK  + C P   T++S+I     +G + +A    +E
Sbjct: 269 LYSLAVQACCKTLNLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMEDAIRWKDE 328

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496
           M+  G   N+   TSLI  + K       +    ++   G +P+      L+   ++   
Sbjct: 329 MVSDGISMNVVAATSLITGHCKNNDLGSALDLFYKMENEGPSPNSVTFSVLIERFSKNG- 387

Query: 497 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFK----KEATELFN-SISKDVKKAY-C 550
            E+ K +E  +K  S LG    +      I+G  K    +EA +LF+ S    +   + C
Sbjct: 388 -EMEKALEFYKKMES-LGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFIC 445

Query: 551 NCLIDLCVNLNLLENACKLL 570
           N ++        ++ A +LL
Sbjct: 446 NTILSWLCKQGKIDKATELL 465


>gi|255661136|gb|ACU25737.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 426

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 162/356 (45%), Gaps = 30/356 (8%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++LY+  +++ RK  D  KA  +F  +   G  PD V ++ +I+      L  +A    
Sbjct: 43  DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDIVAYNAMINVFGKAKLFREARSLI 102

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M + G  P+  +YS+++  Y        A  ++   R  K  +D    + +I +YG  
Sbjct: 103 SEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQL 162

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G       ++  M+ +G++PN+++YN LL   G A+   +   +++ M    +  N  TY
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
            S++  YG+    E   ++ +EM+ +G++ +   Y+T++++ + VG  D A  +F+ ++S
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWSKVGKLDRAAMLFQKLRS 282

Query: 404 S------------------------------ENCQPDSWTFSSMITICSCRGKVSEAEAM 433
           S                              E  +PD+      I I    G++ EA  +
Sbjct: 283 SGVDIDQVLYQTMIVAYEKAGLVAHAKRLLHELKRPDNIPRDIAIHILVGAGRIEEATWV 342

Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
           F + ++AG   ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 343 FRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALILN 398



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 150/314 (47%), Gaps = 1/314 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           Y+  +  F K    D A      M    V  D V +S LI  +R     +KA+  F R+ 
Sbjct: 12  YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G  PD + Y++MI+ +G+A     A  L    R      +  ++STL+ +Y     F 
Sbjct: 72  RSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFL 131

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
             L+V+ EM+ I    ++ T N ++D  G+     +   ++  M   G+ PN  +Y +LL
Sbjct: 132 EALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 191

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
           R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + ++M+ +   
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGI 250

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +P+S T+S++I+I S  GK+  A  +F ++  +G + +  +  ++I  Y KA       R
Sbjct: 251 EPNSITYSTIISIWSKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYEKAGLVAHAKR 310

Query: 468 ALNRLPELGITPDD 481
            L+ L      P D
Sbjct: 311 LLHELKRPDNIPRD 324



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 156/350 (44%), Gaps = 34/350 (9%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +++ YN  + VF K +   +A  L  +M   GV P+  ++STL++    N    +A+  F
Sbjct: 78  DIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVF 137

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
             M    C  D  T + MID YG+ G  + A  L+   R  K  I+PN  +++TL+++YG
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR--KMGIEPNVVSYNTLLRVYG 195

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
            A  F   ++++  M+   ++ N++TYN+++   G+     +   + +EM + G+ PN  
Sbjct: 196 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSI 255

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           TY++++  + +    +    ++++++  G+ +   LY T++      G    A  +  ++
Sbjct: 256 TYSTIISIWSKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYEKAGLVAHAKRLLHEL 315

Query: 402 KSSENCQPD---------------SWTFSS---------------MITICSCRGKVSEAE 431
           K  +N   D               +W F                 MI + S   K     
Sbjct: 316 KRPDNIPRDIAIHILVGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVV 375

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
            +F++M   G+ P+  V+  ++  YGK    D        + E+G    D
Sbjct: 376 EVFDKMCGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQEVGCVFSD 425



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A+ L     +    + V+ YN  M ++ K  + +KA  L  +M +RG++P+++T+ST+IS
Sbjct: 203 AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIIS 262

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++A   F+++ S G D D + Y +MI AY +AG V  A     R  +E  R 
Sbjct: 263 IWSKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYEKAGLVAHA----KRLLHELKRP 318

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
           D       I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++
Sbjct: 319 DNIPRDIAIHILVGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVF 378

Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
            +M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 379 DKMCGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQEVG 420


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 143/291 (49%), Gaps = 10/291 (3%)

Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLISCARMNNLPNKA 219
            S  VI +N  + +  K    + A  +FD+M    GV PD  TF+ LI     N++ ++ 
Sbjct: 128 VSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEG 187

Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLI 277
             +F+ M  F C+PD +TY++++D   RAG V +A  +      +   + P+   ++TL+
Sbjct: 188 FRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLV 247

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY-KEMTDNGL 336
           + Y      D  L V+EEM + G+KPN ITYN L+  +   ++  ++K I    +   G 
Sbjct: 248 RGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGF 307

Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
            P+  TY +L+ A   A   ++ L ++++MKE  +Q     Y+ L+      G  + A +
Sbjct: 308 VPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQ 367

Query: 397 IFEDMKSS------ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
           +F+ +         + C P    ++ +       GK  +AE +F ++++ G
Sbjct: 368 LFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKG 418



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 139/287 (48%), Gaps = 6/287 (2%)

Query: 200 NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL-- 257
           +++ +T     R    P KA E+F      G   D+ +Y  M+D  GR GN+ +A     
Sbjct: 24  SISKTTFFQVLRFIASPPKAFEFFNWASRNGFAHDSRSYFMMLDILGRNGNLNIARNFLF 83

Query: 258 -YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
             +R  N   +I+    +TL++ YG AG F+  + ++  MK+ GV P++IT+N+LL  + 
Sbjct: 84  SIERRSNGSVKIEDRFCNTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILL 143

Query: 317 RAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
           +  R     +++ EM    G++P+  T+  L+R + +    ++    ++EM     +  V
Sbjct: 144 KRGRTNMAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDV 203

Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
             YNTL+      G    A  + + M K  ++  PD  T+++++     + ++ EA  +F
Sbjct: 204 VTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVF 263

Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPD 480
            EM+  G +PN     +LI+   + Q+ D +   L   +   G  PD
Sbjct: 264 EEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPD 310



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 129/265 (48%), Gaps = 9/265 (3%)

Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
           VK ++   +TL+       L N+A++ F  M S G  P  +T++S++    + G   MA 
Sbjct: 93  VKIEDRFCNTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAH 152

Query: 256 GLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
            ++D      + + P+   F+ LI+ +      D     ++EM     +P+++TYN L+D
Sbjct: 153 SVFDEMCG-TYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVD 211

Query: 314 TMGRAKRPW----QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369
            + RA +       VK + K+M D  LSP+  TY +L+R Y   +  ++ L V+ EM  +
Sbjct: 212 GLCRAGKVRIAHNVVKGMVKKMKD--LSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSR 269

Query: 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429
           G++ +   YNTL+    +V   D+  EI           PD+ T+++++      G   E
Sbjct: 270 GLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDE 329

Query: 430 AEAMFNEMLEAGFEPNLFVLTSLIQ 454
           A  MF +M E   +P+    + LI+
Sbjct: 330 ALKMFKKMKELKVQPDSATYSVLIR 354



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 124/303 (40%), Gaps = 16/303 (5%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFER 225
           YN  M       + D+A ++F  M +  V+PD+ T+S LI   C R +    +A + F++
Sbjct: 314 YNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDF--ERAEQLFDK 371

Query: 226 MPSF-------GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
           +          GC P    Y+ + D   + G    A  ++ R   +K   DP ++ TLI 
Sbjct: 372 LSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVF-RQLMKKGTQDPPSYKTLII 430

Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
            +   G F+    +   M      P+  TY  L++   +   P       + M  +   P
Sbjct: 431 GHCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLERMLKSSYLP 490

Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
             + + S+L    +  +  ++ S    M ++ ++ ++ L    + +    G   +AF+I 
Sbjct: 491 KTSVFHSILSELLKNDFARESASFVVLMIDRKIRQNINLSTHTMRLLFGSGLRIKAFQIV 550

Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
           E +  +            +I      GK+ +A+ M +  LE G   ++ V   +I+   K
Sbjct: 551 ELLYDNGYM----VDMEELIGFICQNGKLLDAQKMLSFCLEKGHNVDINVCNVVIEGLCK 606

Query: 459 AQR 461
            +R
Sbjct: 607 MKR 609


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 160/354 (45%), Gaps = 50/354 (14%)

Query: 191 MLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
           M ++G  P  VTF  L+      N    A E  E M   GC P+AL ++ ++DA  + G 
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGR 60

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
              A+G                                     E M+++GV P ++TYN 
Sbjct: 61  SAEAYGF-----------------------------------IETMRSMGVSPTIVTYNL 85

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG--EDTLSVYREMKE 368
           L+D   + ++  +   I +EMT  G  PN  TY + L  +G  +YG  +D L+++R M E
Sbjct: 86  LIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFL--HGLCKYGKVDDALALFRAMTE 143

Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KV 427
           K ++L V  Y TL+      G   EA+ + ++M++S  C P    ++++++   C+G ++
Sbjct: 144 KKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENS-GCVPKPGCYNAILSWL-CKGSRI 201

Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
           +EA  +F  M  +G  P+      ++  Y +  R DD +  L ++   G+ P +     L
Sbjct: 202 NEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTL 261

Query: 488 LNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQD------IEGDFKKE 533
           ++ + +  +  E    L E + +  S       L+ ++Q       +E D++KE
Sbjct: 262 IDALNRAGRVSEAYRLLQEMISRGLSPNSRTYALMRKQQTDDSNLVVELDYRKE 315



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 125/275 (45%), Gaps = 1/275 (0%)

Query: 143 TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVT 202
            N  T A  L     +       +++N  M    K     +A    + M   GV P  VT
Sbjct: 23  ANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYGFIETMRSMGVSPTIVT 82

Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
           ++ LI         ++A+E  + M   G +P+ +TY++ +    + G V+ A  L+    
Sbjct: 83  YNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMT 142

Query: 263 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
            +K R+D   ++TLI     AG      ++ +EM+  G  P    YN +L  + +  R  
Sbjct: 143 EKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRIN 202

Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +   ++K MT +G+ P+W T+  ++  Y R    +D L + ++MK  G+     +YNTL+
Sbjct: 203 EAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLI 262

Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
                 G   EA+ + ++M  S    P+S T++ M
Sbjct: 263 DALNRAGRVSEAYRLLQEM-ISRGLSPNSRTYALM 296


>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
 gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 152/311 (48%), Gaps = 2/311 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ + ++ K      + +L+ +M     KP+  T++ L++      L  KA E FE++ 
Sbjct: 267 YNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQ 326

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G +PD   Y++++++Y RAG    A  ++   ++     D  +++ ++  YG AG   
Sbjct: 327 EDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHS 386

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V+EEMK +G+ P M ++  LL    +A+   + + I KEM++NG+ P+     S+L
Sbjct: 387 DAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSML 446

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YGR         +  EM+       ++ YN L+ +    G+ +   E+F ++K  +N 
Sbjct: 447 NLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELK-EKNF 505

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD  T++S I   S +    +   +F EM+++G  P+      L+      ++ + V  
Sbjct: 506 RPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTS 565

Query: 468 ALNRLPELGIT 478
            L  + + G+T
Sbjct: 566 VLRTMHK-GVT 575



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 163/367 (44%), Gaps = 7/367 (1%)

Query: 128 DDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERL 187
           DD +     + LN     D+  L   +   K     +VI +N+ +  + +     +AE L
Sbjct: 120 DDLINVSVQLRLNK--KWDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESL 177

Query: 188 FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL---TYSSMIDA 244
           +  +L+    P   T++ LI    M  L  +A      M +    P  +    Y++ I+ 
Sbjct: 178 YVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEG 237

Query: 245 -YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
              R GN E A  ++ R + ++ +     ++ +I LYG A        +Y EM++   KP
Sbjct: 238 LMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKP 297

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           N+ TY  L++   R     + + I++++ ++GL P+   Y +L+ +Y RA Y      ++
Sbjct: 298 NICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIF 357

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
             M+  G +     YN ++      G   +A  +FE+MK      P   +   +++  S 
Sbjct: 358 SLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRL-GIAPTMKSHMLLLSAYSK 416

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
              V++ EA+  EM E G EP+ FVL S++  YG+  +   + + L  +     T D   
Sbjct: 417 ARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADIST 476

Query: 484 CGCLLNV 490
              L+N+
Sbjct: 477 YNILINI 483



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 174/364 (47%), Gaps = 15/364 (4%)

Query: 165 VILYNVTMK-VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA---- 219
           V +YN  ++ + ++  + ++A  +F  M     KP   T++ +I      NL  KA    
Sbjct: 228 VTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMI------NLYGKASKSY 281

Query: 220 VEW--FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           + W  +  M S  C P+  TY+++++A+ R G  E A  ++++ + +    D   ++ L+
Sbjct: 282 MSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALM 341

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           + Y  AG   G   ++  M+ +G +P+  +YN ++D  GRA      + +++EM   G++
Sbjct: 342 ESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIA 401

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P   ++  LL AY +AR      ++ +EM E G++    + N++L +   +G   +  +I
Sbjct: 402 PTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKI 461

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
             +M++   C  D  T++ +I I    G +   E +F E+ E  F P++   TS I  Y 
Sbjct: 462 LAEMENGP-CTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYS 520

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 516
           + +     +     + + G  PD      LL+  +   + E++  ++  + K  +    V
Sbjct: 521 RKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKGVTVSSLV 580

Query: 517 VKLL 520
            KL+
Sbjct: 581 PKLM 584



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 148/317 (46%), Gaps = 5/317 (1%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST----LISCARMNNLPNKAVEWF 223
           Y + +K +     +++AE +  +M +  V P  +  +     +    +      +A++ F
Sbjct: 193 YALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVF 252

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           +RM    C P   TY+ MI+ YG+A    M++ LY   R+ + + +   ++ L+  +   
Sbjct: 253 QRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFARE 312

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           G  +    ++E+++  G++P++  YN L+++  RA  P+    I+  M   G  P+  +Y
Sbjct: 313 GLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASY 372

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             ++ AYGRA    D  +V+ EMK  G+  ++  +  LL+  +      +   I ++M S
Sbjct: 373 NIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEM-S 431

Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
               +PD++  +SM+ +    G+ ++ E +  EM       ++     LI  YGKA   +
Sbjct: 432 ENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLE 491

Query: 464 DVVRALNRLPELGITPD 480
            +      L E    PD
Sbjct: 492 RIEELFVELKEKNFRPD 508



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 167/381 (43%), Gaps = 18/381 (4%)

Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFR 176
           D +F VL  +    L       +   T+PD  A  L    +   +  ++I  +V +++ +
Sbjct: 79  DGIFPVLSPIAQKILS-----FIQKETDPDKVADVLGALPSTHASWDDLINVSVQLRLNK 133

Query: 177 KCRDLDKAERLFDDMLDRG-VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
           K    D    + + +L +   +PD + F+ LI          +A   + ++      P  
Sbjct: 134 K---WDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTE 190

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI------KLYGTAGNFDGC 289
            TY+ +I AY  AG +E A  +    +N    + P      +       L    GN +  
Sbjct: 191 DTYALLIKAYCMAGLIERAEVVLVEMQNH--HVSPKTIGVTVYNAYIEGLMKRKGNTEEA 248

Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
           ++V++ MK    KP   TYN +++  G+A + +    +Y EM  +   PN  TY +L+ A
Sbjct: 249 IDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNA 308

Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
           + R    E    ++ +++E G++  V +YN L+   +  GY   A EIF  M+    C+P
Sbjct: 309 FAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHM-GCEP 367

Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
           D  +++ M+      G  S+AEA+F EM   G  P +     L+  Y KA+        +
Sbjct: 368 DRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIV 427

Query: 470 NRLPELGITPDDRFCGCLLNV 490
             + E G+ PD      +LN+
Sbjct: 428 KEMSENGVEPDTFVLNSMLNL 448


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 166/367 (45%), Gaps = 3/367 (0%)

Query: 134 DCVIILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVFRKCRDLDKAERLFDDM 191
           +C I++N          A + F   LK     + I +   +K       + +A    D +
Sbjct: 122 NCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKV 181

Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
           +  G   D +++ TLI           A++  +R+      P+ + Y+++ID+  +   V
Sbjct: 182 VALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLV 241

Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
             AF L+    ++    D   +S LI  +   G  +  ++++ +M    +KP++ T+N L
Sbjct: 242 NEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNIL 301

Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
           ++   +  +  + KT++  M   G+ PN+ TY SL+  Y   +      S++  M + G+
Sbjct: 302 VNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGV 361

Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
              +  Y+ ++     +   DEA  +F++M   +N  PD  T+SS+I   S  G++S A 
Sbjct: 362 NPDIQSYSIMINGFCKIKKFDEAMNLFKEM-HRKNIIPDVVTYSSLIDGLSKSGRISYAL 420

Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
            + ++M + G  P +    S++    K  + D  +  L +L + GI P+      L+  +
Sbjct: 421 QLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGL 480

Query: 492 TQTPKEE 498
            Q+ K E
Sbjct: 481 CQSGKLE 487



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 165/335 (49%), Gaps = 1/335 (0%)

Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
           AAL L    +       V++YN  +    K + +++A  LF +M+ +G+ PD VT+S LI
Sbjct: 208 AALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALI 267

Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
           S   +    N A++ F +M      PD  T++ +++A+ + G ++    ++D    +  +
Sbjct: 268 SGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIK 327

Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
            +   +++L+  Y      +   +++  M   GV P++ +Y+ +++   + K+  +   +
Sbjct: 328 PNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNL 387

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
           +KEM    + P+  TY+SL+    ++      L +  +M ++G+  ++  YN++L     
Sbjct: 388 FKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCK 447

Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
           +   D+A  +   +K  +  QP+ +T+S +I      GK+ +A  +F  +L  G   N+ 
Sbjct: 448 IHQVDKAIALLTKLK-DKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVD 506

Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 482
             T +IQ +      ++ +  L+++ + G  PD +
Sbjct: 507 TYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAK 541



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 143/288 (49%), Gaps = 3/288 (1%)

Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
           RG+KP+ V  + LI+C     L   A   F ++   G  PD +T++++I      G ++ 
Sbjct: 114 RGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQ 173

Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
           AF  +D+     +  D  ++ TLI      G     L++ + +    V+PN++ YN ++D
Sbjct: 174 AFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIID 233

Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
           +M + K   +   ++ EM   G+SP+  TY++L+  +       D + ++ +M  + ++ 
Sbjct: 234 SMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKP 293

Query: 374 SVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
            V  +N L+ A C D G   E   +F DM   +  +P+  T++S++       +V++A++
Sbjct: 294 DVYTFNILVNAFCKD-GKMKEGKTVF-DMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKS 351

Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +FN M + G  P++   + +I  + K ++ D+ +     +    I PD
Sbjct: 352 IFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPD 399



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 151/319 (47%), Gaps = 3/319 (0%)

Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
           S +V+ Y+  +  F     L+ A  LF+ M+   +KPD  TF+ L++    +    +   
Sbjct: 257 SPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKT 316

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F+ M   G  P+ +TY+S++D Y     V  A  +++         D  ++S +I  + 
Sbjct: 317 VFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFC 376

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
               FD  +N+++EM    + P+++TY++L+D + ++ R      +  +M D G+ P   
Sbjct: 377 KIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIR 436

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED- 400
           TY S+L A  +    +  +++  ++K+KG+Q ++  Y+ L+      G  ++A ++FE  
Sbjct: 437 TYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGL 496

Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
           +    N   D++T   MI      G  +EA A+ ++M + G  P+      +I    K  
Sbjct: 497 LVKGHNLNVDTYTI--MIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKD 554

Query: 461 RTDDVVRALNRLPELGITP 479
             D   + L  +   G+ P
Sbjct: 555 ENDMAEKLLREMIARGVRP 573



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 147/324 (45%), Gaps = 1/324 (0%)

Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
           I Y+ T   F    D+D A  LF+ +L R   P    F+ ++     +   +  +   ++
Sbjct: 51  ISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQK 110

Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
           M   G  P+ +  + +I+ + + G +  AF ++ +     +  D   F+TLIK     G 
Sbjct: 111 MEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQ 170

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
                  ++++ A+G   + I+Y  L+  + +         + + +  N + PN   Y +
Sbjct: 171 IQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNT 230

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           ++ +  + +   +   ++ EM  KG+   V  Y+ L++    +G  ++A ++F  M   E
Sbjct: 231 IIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKM-ILE 289

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
           N +PD +TF+ ++      GK+ E + +F+ M++ G +PN     SL+  Y   +  +  
Sbjct: 290 NIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKA 349

Query: 466 VRALNRLPELGITPDDRFCGCLLN 489
               N + + G+ PD +    ++N
Sbjct: 350 KSIFNTMAQGGVNPDIQSYSIMIN 373



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/282 (19%), Positives = 125/282 (44%), Gaps = 3/282 (1%)

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
           F  +P      + ++YSS    +    +V+ A  L++R            F+ ++     
Sbjct: 38  FNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVK 97

Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
           + ++   L + ++M+  G+KPN++  N L++   +        +++ ++   G  P+  T
Sbjct: 98  SKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTIT 157

Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
           + +L++        +     + ++   G       Y TL+     VG T  A ++ + + 
Sbjct: 158 FTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVD 217

Query: 403 SSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
            +   QP+   ++++I ++C  +  V+EA  +F+EM+  G  P++   ++LI  +    +
Sbjct: 218 GNL-VQPNVVMYNTIIDSMCKVK-LVNEAFDLFSEMISKGISPDVVTYSALISGFCILGK 275

Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 503
            +D +   N++    I PD      L+N   +  K + GK V
Sbjct: 276 LNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTV 317



 Score = 44.3 bits (103), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 56/139 (40%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN  +    K   +DKA  L   + D+G++P+  T+S LI     +     A + FE + 
Sbjct: 438 YNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLL 497

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G + +  TY+ MI  +   G    A  L  +  +     D   +  +I         D
Sbjct: 498 VKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDEND 557

Query: 288 GCLNVYEEMKAIGVKPNMI 306
               +  EM A GV+P  I
Sbjct: 558 MAEKLLREMIARGVRPRQI 576


>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 152/311 (48%), Gaps = 2/311 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           YN+ + ++ K      + +L+ +M     KP+  T++ L++      L  KA E FE++ 
Sbjct: 289 YNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQ 348

Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
             G +PD   Y++++++Y RAG    A  ++   ++     D  +++ ++  YG AG   
Sbjct: 349 EDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHS 408

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V+EEMK +G+ P M ++  LL    +A+   + + I KEM++NG+ P+     S+L
Sbjct: 409 DAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSML 468

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
             YGR         +  EM+       ++ YN L+ +    G+ +   E+F ++K  +N 
Sbjct: 469 NLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELK-EKNF 527

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD  T++S I   S +    +   +F EM+++G  P+      L+      ++ + V  
Sbjct: 528 RPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTS 587

Query: 468 ALNRLPELGIT 478
            L  + + G+T
Sbjct: 588 VLRTMHK-GVT 597



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 163/367 (44%), Gaps = 7/367 (1%)

Query: 128 DDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERL 187
           DD +     + LN     D+  L   +   K     +VI +N+ +  + +     +AE L
Sbjct: 142 DDLINVSVQLRLNK--KWDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESL 199

Query: 188 FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL---TYSSMIDA 244
           +  +L+    P   T++ LI    M  L  +A      M +    P  +    Y++ I+ 
Sbjct: 200 YVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEG 259

Query: 245 -YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
              R GN E A  ++ R + ++ +     ++ +I LYG A        +Y EM++   KP
Sbjct: 260 LMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKP 319

Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
           N+ TY  L++   R     + + I++++ ++GL P+   Y +L+ +Y RA Y      ++
Sbjct: 320 NICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIF 379

Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
             M+  G +     YN ++      G   +A  +FE+MK      P   +   +++  S 
Sbjct: 380 SLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRL-GIAPTMKSHMLLLSAYSK 438

Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
              V++ EA+  EM E G EP+ FVL S++  YG+  +   + + L  +     T D   
Sbjct: 439 ARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADIST 498

Query: 484 CGCLLNV 490
              L+N+
Sbjct: 499 YNILINI 505



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 174/364 (47%), Gaps = 15/364 (4%)

Query: 165 VILYNVTMK-VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA---- 219
           V +YN  ++ + ++  + ++A  +F  M     KP   T++ +I      NL  KA    
Sbjct: 250 VTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMI------NLYGKASKSY 303

Query: 220 VEW--FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
           + W  +  M S  C P+  TY+++++A+ R G  E A  ++++ + +    D   ++ L+
Sbjct: 304 MSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALM 363

Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
           + Y  AG   G   ++  M+ +G +P+  +YN ++D  GRA      + +++EM   G++
Sbjct: 364 ESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIA 423

Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
           P   ++  LL AY +AR      ++ +EM E G++    + N++L +   +G   +  +I
Sbjct: 424 PTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKI 483

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
             +M++   C  D  T++ +I I    G +   E +F E+ E  F P++   TS I  Y 
Sbjct: 484 LAEMENGP-CTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYS 542

Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 516
           + +     +     + + G  PD      LL+  +   + E++  ++  + K  +    V
Sbjct: 543 RKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKGVTVSSLV 602

Query: 517 VKLL 520
            KL+
Sbjct: 603 PKLM 606



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 149/319 (46%), Gaps = 9/319 (2%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK------AVE 221
           Y + +K +     +++AE +  +M +  V P   T    +  A +  L  +      A++
Sbjct: 215 YALLIKAYCMAGLIERAEVVLVEMQNHHVSPK--TIGVTVYNAYIEGLMKRKGNTEEAID 272

Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
            F+RM    C P   TY+ MI+ YG+A    M++ LY   R+ + + +   ++ L+  + 
Sbjct: 273 VFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFA 332

Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
             G  +    ++E+++  G++P++  YN L+++  RA  P+    I+  M   G  P+  
Sbjct: 333 REGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRA 392

Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
           +Y  ++ AYGRA    D  +V+ EMK  G+  ++  +  LL+  +      +   I ++M
Sbjct: 393 SYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEM 452

Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
            S    +PD++  +SM+ +    G+ ++ E +  EM       ++     LI  YGKA  
Sbjct: 453 -SENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGF 511

Query: 462 TDDVVRALNRLPELGITPD 480
            + +      L E    PD
Sbjct: 512 LERIEELFVELKEKNFRPD 530



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 168/385 (43%), Gaps = 18/385 (4%)

Query: 113 SATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTM 172
           S   D +F VL  +    L       +   T+PD  A  L    +   +  ++I  +V +
Sbjct: 97  SGFVDGIFPVLSPIAQKILS-----FIQKETDPDKVADVLGALPSTHASWDDLINVSVQL 151

Query: 173 KVFRKCRDLDKAERLFDDMLDRG-VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
           ++ +K    D    + + +L +   +PD + F+ LI          +A   + ++     
Sbjct: 152 RLNKK---WDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRY 208

Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI------KLYGTAGN 285
            P   TY+ +I AY  AG +E A  +    +N    + P      +       L    GN
Sbjct: 209 VPTEDTYALLIKAYCMAGLIERAEVVLVEMQNH--HVSPKTIGVTVYNAYIEGLMKRKGN 266

Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
            +  ++V++ MK    KP   TYN +++  G+A + +    +Y EM  +   PN  TY +
Sbjct: 267 TEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTA 326

Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
           L+ A+ R    E    ++ +++E G++  V +YN L+   +  GY   A EIF  M+   
Sbjct: 327 LVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHM- 385

Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
            C+PD  +++ M+      G  S+AEA+F EM   G  P +     L+  Y KA+     
Sbjct: 386 GCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKC 445

Query: 466 VRALNRLPELGITPDDRFCGCLLNV 490
              +  + E G+ PD      +LN+
Sbjct: 446 EAIVKEMSENGVEPDTFVLNSMLNL 470


>gi|297737146|emb|CBI26347.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 137/295 (46%), Gaps = 31/295 (10%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           VI YN+ +++  K R     E L+D+M+ RG+ P N T+ TLI       L  +A+ W +
Sbjct: 196 VIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLIDVYSKGGLTEEALHWLD 255

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           RM   G +PD +T   ++  Y +AG  + A   +     + W ++            +A 
Sbjct: 256 RMNKQGMEPDEVTMGVVVQTYKKAGEFKKAEQFF-----KNWSLE------------SAS 298

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
               CL+ Y             TYN L+DT G+A +  +    +  M   G+ PN  T+ 
Sbjct: 299 QPHVCLSSY-------------TYNTLIDTYGKAGQLREASDTFAWMLREGIIPNTVTFN 345

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +++   G     E+  S+ ++M+E         YN L+++ A     D A   F+ MK +
Sbjct: 346 TMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRAASYFKKMKEA 405

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
              +PD  ++ +++   S R  V EAE + +EM E G E + F  ++L + Y +A
Sbjct: 406 -RLEPDLVSYRTLLYAFSIRHLVGEAEILVSEMDERGLEIDEFTQSALTRMYIEA 459



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 167/404 (41%), Gaps = 78/404 (19%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A +L     +L+   +   YN+ + +  K  ++D+A   F  M +  ++PD V++ TL+ 
Sbjct: 360 AASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRAASYFKKMKEARLEPDLVSYRTLLY 419

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALT------------------------------- 237
              + +L  +A      M   G + D  T                               
Sbjct: 420 AFSIRHLVGEAEILVSEMDERGLEIDEFTQSALTRMYIEAGMLKKSWLWFRRFHLEGNMS 479

Query: 238 ---YSSMIDAYGRAGNV---EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
              YS+ IDAYG  G++   E AF     +R    ++    F+ +IK YG +  ++    
Sbjct: 480 SECYSANIDAYGERGHILEAEKAFLCCKESR----KLSVLEFNVMIKAYGISNRYEKACQ 535

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-------------------------- 325
           + + M+  GV P+  +YN+L+  +  A  P + K                          
Sbjct: 536 LIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLMKMQETQLVSDCIPYCAVISSFI 595

Query: 326 ---------TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
                     ++KEM    + P+   Y  L+ A+       + ++    ++  G+ ++  
Sbjct: 596 KLGQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVREAVNYVNALRNAGLPMNAV 655

Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
           +YN+L+ +   VGY +EA E ++ +++SE   PD ++ + MI + S R  V +AE +F  
Sbjct: 656 IYNSLIKLYTKVGYLEEAQEAYKMLQASE-VGPDVYSSNCMIDLYSERSMVKQAEEIFES 714

Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
           +   G + N F    ++  Y +  +  +  + + ++ ELG+  D
Sbjct: 715 LKRKG-DANEFSFAMMLCMYKRIGKLKEAFQIVQKMRELGLVTD 757



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 145/341 (42%), Gaps = 41/341 (12%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V+ +NV +K +      +KA +L D M + GV PD  ++++LI      +LP+KA  +  
Sbjct: 514 VLEFNVMIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLM 573

Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
           +M       D + Y ++I ++ + G +EMA GL+        + D   +  LI  +   G
Sbjct: 574 KMQETQLVSDCIPYCAVISSFIKLGQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVG 633

Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           N    +N    ++  G+  N + YN                                   
Sbjct: 634 NVREAVNYVNALRNAGLPMNAVIYN----------------------------------- 658

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           SL++ Y +  Y E+    Y+ ++   +   V   N ++ + ++     +A EIFE +K  
Sbjct: 659 SLIKLYTKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVKQAEEIFESLKRK 718

Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
            +   + ++F+ M+ +    GK+ EA  +  +M E G   +L    +++  Y    R  D
Sbjct: 719 GD--ANEFSFAMMLCMYKRIGKLKEAFQIVQKMRELGLVTDLLSYNNVLGFYAMDGRFKD 776

Query: 465 VVRALNRLPELGITPDD---RFCGCLLNVMTQTPKEELGKL 502
            V     + E  I PDD   +  G +L V    PK+ +GKL
Sbjct: 777 AVGTFKEMIEAAIQPDDCTFKSLGVVL-VKCGIPKQAVGKL 816



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 100/210 (47%), Gaps = 5/210 (2%)

Query: 286 FDGCLNVYEEMKAIGV-KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
           ++  L ++E +K  G  + N+I YN +L  +G+A++   V++++ EM   G++P  +TY 
Sbjct: 176 WERALEIFEWLKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYG 235

Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
           +L+  Y +    E+ L     M ++GM+        ++      G   +A + F++    
Sbjct: 236 TLIDVYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLE 295

Query: 405 ENCQP----DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
              QP     S+T++++I      G++ EA   F  ML  G  PN     ++I   G   
Sbjct: 296 SASQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHG 355

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNV 490
           + ++    + ++ EL   PD R    L+++
Sbjct: 356 QLEEAASLMQKMEELRCPPDTRTYNILISL 385



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 126/270 (46%), Gaps = 7/270 (2%)

Query: 218 KAVEWFERMPSFGC-DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
           +A+E FE +   GC + + + Y+ M+   G+A        L+D   +       + + TL
Sbjct: 178 RALEIFEWLKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTL 237

Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT-DNG 335
           I +Y   G  +  L+  + M   G++P+ +T   ++ T  +A    + +  +K  + ++ 
Sbjct: 238 IDVYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLESA 297

Query: 336 LSPNW----NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
             P+      TY +L+  YG+A    +    +  M  +G+  +   +NT++ +C + G  
Sbjct: 298 SQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQL 357

Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
           +EA  + + M+    C PD+ T++ +I++ +    +  A + F +M EA  EP+L    +
Sbjct: 358 EEAASLMQKMEEL-RCPPDTRTYNILISLHAKHNNIDRAASYFKKMKEARLEPDLVSYRT 416

Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPDD 481
           L+  +       +    ++ + E G+  D+
Sbjct: 417 LLYAFSIRHLVGEAEILVSEMDERGLEIDE 446



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 119/299 (39%), Gaps = 39/299 (13%)

Query: 126 LGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAE 185
           L D F     + IL +   P  A   L         S + I Y   +  F K   L+ AE
Sbjct: 546 LPDKFSYNSLIQILASADLPHKAKFYLMKMQETQLVS-DCIPYCAVISSFIKLGQLEMAE 604

Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245
            LF +M+   V+PD V +  L                                   I+A+
Sbjct: 605 GLFKEMIGYNVQPDVVVYGIL-----------------------------------INAF 629

Query: 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 305
              GNV  A    +  RN    ++   +++LIKLY   G  +     Y+ ++A  V P++
Sbjct: 630 ADVGNVREAVNYVNALRNAGLPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQASEVGPDV 689

Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
            + N ++D         Q + I++ +   G   N  ++A +L  Y R    ++   + ++
Sbjct: 690 YSSNCMIDLYSERSMVKQAEEIFESLKRKG-DANEFSFAMMLCMYKRIGKLKEAFQIVQK 748

Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM-ITICSC 423
           M+E G+   +  YN +L   A  G   +A   F++M  +   QPD  TF S+ + +  C
Sbjct: 749 MRELGLVTDLLSYNNVLGFYAMDGRFKDAVGTFKEMIEAA-IQPDDCTFKSLGVVLVKC 806


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 172/405 (42%), Gaps = 3/405 (0%)

Query: 109 LDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILY 168
           LD  S +  ++ +VL  +    L      +L ++    TA     +   +     +V  Y
Sbjct: 63  LDGSSWSVHNIRNVLGPVHGQVLGSHVAAVLRSLKVTGTAISFFRWAGEQAGFQHDVFTY 122

Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
           N  M +    ++  +   + ++ML  G+ P+  +F+ LI         + AV  FE M  
Sbjct: 123 NCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKR 182

Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST-LIKLYGTAGNFD 287
             C PD  T+  ++D   +AG  E AF ++       +     A  T +++    A    
Sbjct: 183 KRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVK 242

Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
               V+ +M+  G  P+ I YN ++D + +A    +   +   M      P   TY  L+
Sbjct: 243 EAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILV 302

Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
            +  +A   E    ++R M   G + +  +Y +L+   A  G   EA  +F++M  +   
Sbjct: 303 NSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEA-GY 361

Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
           +PD  T + MI      G   +A   F EM+  G +PN+   T++IQ   K  R  +  R
Sbjct: 362 RPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFR 421

Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 511
            +  +   G  PD     CLL+   +  + +E  +L++ ++K +S
Sbjct: 422 IMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSS 466



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 189/428 (44%), Gaps = 34/428 (7%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           + I YN  +    K     +A ++ D+ML +   P  VT+  L++         +A E F
Sbjct: 259 DAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELF 318

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
             M + G  P+++ Y+S+I  + ++G ++ A  L+D      +R D    + +I     +
Sbjct: 319 RVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKS 378

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
           GNF+     +EEM   G KPN++TY  ++  + +  R      I K M  +G  P+  TY
Sbjct: 379 GNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTY 438

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF-EIFEDMK 402
             LL  + +    ++   +  E+ +     ++ LY++L+    D G  ++   ++FE  K
Sbjct: 439 ICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSK 498

Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ--CYGKAQ 460
           ++          S ++ +C   G++ EA  +F  M+  G +P+      LI   C  +  
Sbjct: 499 AAAETLDPGLCCSIIVGLCK-TGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSREN 557

Query: 461 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP-------KEELGKLVECVEKSNSK- 512
           R +     L+ L ++G  PD          +T TP         E+ + V+ +E+++S+ 
Sbjct: 558 RVERAFALLHDLEKVGYLPD---------AVTYTPLCIGLCKIGEVDRAVKMLEEASSRG 608

Query: 513 -----LGYVVKLLLEEQDIEGDFKKEATELFNSISKDV----KKAYCNCLIDLCVNLNLL 563
                + Y    L      +G   + A  LF  + +        AYC C+I+  + +  L
Sbjct: 609 WNADVVAYTA--LCTGLCYQGQVDR-AVSLFQEMVRQGGAPDAAAYC-CIINGLIKVKKL 664

Query: 564 ENACKLLE 571
           E+ACK  +
Sbjct: 665 EDACKFFD 672



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 153/323 (47%), Gaps = 2/323 (0%)

Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
           +N+ ++ F + R  D A   F+ M  +  KPD  TF  L+ C     +  KA E F  M 
Sbjct: 157 FNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMM 216

Query: 228 SFG-CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
           + G   PD   +++M+    +A  V+ A  ++ +     +  D  A++T+I     AG+ 
Sbjct: 217 AMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHA 276

Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
              L V + M A    P  +TY  L++++ +A    + + +++ M  +G  PN   Y SL
Sbjct: 277 QEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSL 336

Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
           +  + ++   ++  S++ EM E G +  V  +  ++      G  ++A + FE+M     
Sbjct: 337 IHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRG-G 395

Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
           C+P+  T++++I   S  G+V+ A  +   M+  G  P+      L+  + K  R D+  
Sbjct: 396 CKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAA 455

Query: 467 RALNRLPELGITPDDRFCGCLLN 489
           + L+ L +   +P+ +    L+N
Sbjct: 456 QLLDELDKCSSSPNLQLYSSLVN 478



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 132/290 (45%), Gaps = 4/290 (1%)

Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           LD+A R+F  M+  G KPD  T++ LI+  C    N   +A      +   G  PDA+TY
Sbjct: 522 LDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTY 581

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
           + +     + G V+ A  + + A +  W  D  A++ L       G  D  +++++EM  
Sbjct: 582 TPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVR 641

Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358
            G  P+   Y  +++ + + K+       + EM   G  P   TY +L++A   A   ++
Sbjct: 642 QGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDE 701

Query: 359 TLSVYREMKEKG-MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
               +  M  +G +  SV +Y+ L+         D A ++FEDM S  N  P + T +S+
Sbjct: 702 AFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNV-PTAVTSASL 760

Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
                  GK  +A+ +  EM   G  P+    T+++    K+  +  +++
Sbjct: 761 FDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLK 810



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 150/322 (46%), Gaps = 10/322 (3%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEW 222
           +VI + V +    K  + ++A + F++M+  G KP+ VT++T+I   +++  + N A   
Sbjct: 364 DVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVAN-AFRI 422

Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLY 280
            + M + GC PD++TY  ++D + + G ++ A  L D    +K    PN   +S+L+   
Sbjct: 423 MKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDEL--DKCSSSPNLQLYSSLVNGL 480

Query: 281 GTAGNFDGCLN-VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
              G+ +  L+ ++E+ KA     +     +++  + +  R  +   I++ M   G  P+
Sbjct: 481 CDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPD 540

Query: 340 WNTYASLLRAYGRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
             TY  L+    R+R    E   ++  ++++ G       Y  L      +G  D A ++
Sbjct: 541 ATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKM 600

Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
            E+  SS     D   ++++ T    +G+V  A ++F EM+  G  P+      +I    
Sbjct: 601 LEE-ASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLI 659

Query: 458 KAQRTDDVVRALNRLPELGITP 479
           K ++ +D  +  + +   G  P
Sbjct: 660 KVKKLEDACKFFDEMIGKGQKP 681



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 111/243 (45%), Gaps = 1/243 (0%)

Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
           G + ++ TYN L++ +   K   Q   I++EM   G++PN  ++  L+R++ R R  +D 
Sbjct: 114 GFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDA 173

Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
           ++ +  MK K  +  +  +  L+      G  ++AFE+F +M +     PD    ++M+ 
Sbjct: 174 VTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVR 233

Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
                 +V EA  +F +M + GF P+     ++I    KA    + ++ L+ +      P
Sbjct: 234 TLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVP 293

Query: 480 DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 538
            +   G L+N + +    E   +L   +  S  +   V+   L     +    KEA  LF
Sbjct: 294 TEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLF 353

Query: 539 NSI 541
           + +
Sbjct: 354 DEM 356



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 98/235 (41%), Gaps = 1/235 (0%)

Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
           A AL +   K+    + + Y        K  ++D+A ++ ++   RG   D V ++ L +
Sbjct: 562 AFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCT 621

Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
                   ++AV  F+ M   G  PDA  Y  +I+   +   +E A   +D    +  + 
Sbjct: 622 GLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKP 681

Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKTI 327
               ++ L++    AGN D   + +E M A G +  +++ Y+ L+    +A +      +
Sbjct: 682 TVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKL 741

Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
           +++M   G  P   T ASL     R+   E    + +EM   G       +  +L
Sbjct: 742 FEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAIL 796



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%)

Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
           V++Y+  +  F K   +D A +LF+DM+ RG  P  VT ++L      +    KA E  +
Sbjct: 719 VMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQ 778

Query: 225 RMPSFGCDPDALTYSSMIDA 244
            M + G  P A T+++++D 
Sbjct: 779 EMAAGGSPPHAATFTAILDG 798



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 72/159 (45%), Gaps = 9/159 (5%)

Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG-CDPDA 235
           K + L+ A + FD+M+ +G KP   T++ L+         ++A   FE M + G      
Sbjct: 660 KVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSV 719

Query: 236 LTYSSMIDAYGRAGNVEMAFGLYD----RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
           + Y ++I  + +A  V+ A  L++    R          + F  L++    +G  +    
Sbjct: 720 MIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVR----SGKTEKAQE 775

Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
           + +EM A G  P+  T+  +LD + ++    ++  + +E
Sbjct: 776 LLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 152/327 (46%), Gaps = 3/327 (0%)

Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
           +V +Y V  +   K     K E+L D+M   G+KP+   ++  I     +N   +A + F
Sbjct: 198 DVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMF 257

Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
           E M   G  P+  TYS+MID Y + GNV  A+GLY      +   +   F TL+  +  A
Sbjct: 258 ELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKA 317

Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
                  +++  M   GV PN+  YN L+    ++    +   +  EM    LSP+  TY
Sbjct: 318 RELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTY 377

Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
             L+          +   ++++MK + +  S   YN+L+         ++A ++  +M +
Sbjct: 378 TILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTA 437

Query: 404 SENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
           S   +P+  TFS++I   C+ R  +  A  ++ EM   G  P++   T+LI  + K    
Sbjct: 438 S-GVEPNIITFSTLIDGYCNVR-DIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANM 495

Query: 463 DDVVRALNRLPELGITPDDRFCGCLLN 489
            + +R  + + E GI P+D    CL++
Sbjct: 496 KEALRLYSDMLEAGIHPNDHTFACLVD 522



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 137/308 (44%), Gaps = 13/308 (4%)

Query: 179 RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTY 238
           R  D     +  M+ RG+ PD   +  L  C     L +K  +  + M S G  P+   Y
Sbjct: 178 RRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIY 237

Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEM 296
           +  I    R   +E A  +++  +  K  + PN   +S +I  Y   GN      +Y+E+
Sbjct: 238 TIYILDLCRDNKMEEAEKMFELMK--KHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEI 295

Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
               + PN++ +  L+D   +A+     ++++  M   G+ PN   Y  L+  + ++   
Sbjct: 296 LVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNM 355

Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
            + + +  EM+   +   V  Y  L+  +C +     EA  +F+ MK +E   P S T++
Sbjct: 356 LEAVGLLSEMESLNLSPDVFTYTILINGLCIE-DQVAEANRLFQKMK-NERIFPSSATYN 413

Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
           S+I        + +A  + +EM  +G EPN+   ++LI  Y   +   D+  A+    E+
Sbjct: 414 SLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVR---DIKAAMGLYFEM 470

Query: 476 ---GITPD 480
              GI PD
Sbjct: 471 TIKGIVPD 478



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 132/293 (45%), Gaps = 5/293 (1%)

Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
           K      + +YN  +    K  ++ +A  L  +M    + PD  T++ LI+   + +   
Sbjct: 332 KFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVA 391

Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFST 275
           +A   F++M +    P + TY+S+I  Y +  N+E A  L          ++PN   FST
Sbjct: 392 EANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASG--VEPNIITFST 449

Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
           LI  Y    +    + +Y EM   G+ P+++TY  L+D   +     +   +Y +M + G
Sbjct: 450 LIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAG 509

Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
           + PN +T+A L+  + +       +  Y+E  ++    +   +  L+      GY   A 
Sbjct: 510 IHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRAS 569

Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
             F DM+S     PD  ++ SM+       ++++   +  +M++ G  PNL V
Sbjct: 570 RFFSDMRSC-GITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPNLLV 621



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 118/253 (46%), Gaps = 11/253 (4%)

Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVIL-----YNVTMKVFRKCRDLDKAERLFDDM 191
           I++N +   D  A A   F    K   E I      YN  +  + K  ++++A  L  +M
Sbjct: 379 ILINGLCIEDQVAEANRLFQ---KMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEM 435

Query: 192 LDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
              GV+P+ +TFSTLI     + ++      +FE M   G  PD +TY+++IDA+ +  N
Sbjct: 436 TASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFE-MTIKGIVPDVVTYTALIDAHFKEAN 494

Query: 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310
           ++ A  LY          + + F+ L+  +   G     ++ Y+E        N + +  
Sbjct: 495 MKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTC 554

Query: 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370
           L++ + +     +    + +M   G++P+  +Y S+L+ + + +   DT+ +  +M + G
Sbjct: 555 LIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTG 614

Query: 371 MQLSVTLYNTLLA 383
           + L   L N LLA
Sbjct: 615 I-LPNLLVNQLLA 626



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 123/281 (43%), Gaps = 9/281 (3%)

Query: 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
           +     FS LI  +   G F+  L V  EMK     P+     ++L+ + R +R   V  
Sbjct: 129 KFSIGVFSLLIMEFLEMGLFEEALWVSREMKC---SPDSKACLSILNGLVRRRRFDSVWV 185

Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT-LLAMC 385
            Y+ M   GL P+ + Y  L +   +         +  EM   G++ +V +Y   +L +C
Sbjct: 186 DYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLC 245

Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
            D    +EA ++FE MK      P+ +T+S+MI      G V +A  ++ E+L A   PN
Sbjct: 246 RD-NKMEEAEKMFELMKK-HGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPN 303

Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKLV 503
           + V  +L+  + KA+           + + G+ P+     CL++   ++    E +G L 
Sbjct: 304 VVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLS 363

Query: 504 ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 544
           E    + S   +   +L+    IE D   EA  LF  +  +
Sbjct: 364 EMESLNLSPDVFTYTILINGLCIE-DQVAEANRLFQKMKNE 403


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.317    0.132    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,745,677,632
Number of Sequences: 23463169
Number of extensions: 444052534
Number of successful extensions: 1354092
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8130
Number of HSP's successfully gapped in prelim test: 4594
Number of HSP's that attempted gapping in prelim test: 1143401
Number of HSP's gapped (non-prelim): 76869
length of query: 695
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 545
effective length of database: 8,839,720,017
effective search space: 4817647409265
effective search space used: 4817647409265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)