BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005474
(695 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA---------FEIFEDMKSSENCQ 408
+ L +Y E + G+QLS YN LL +C+ E+ F+IF+ M +
Sbjct: 44 EALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM-IVDKVV 102
Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
P+ TF++ + + A M +M G +P L
Sbjct: 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL 140
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 10/179 (5%)
Query: 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA--------- 283
P+AL +D + G+V A LYD AR ++ ++ L+ + A
Sbjct: 25 PEAL-LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPN 83
Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
+++++M V PN T+ N P + K+M G+ P +Y
Sbjct: 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143
Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
L + R + V M E + LL + D D+ ++ + ++
Sbjct: 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR 202
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%)
Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
L + +F M+ V P+ TF+ A + P A + ++M +FG P +Y
Sbjct: 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145
Query: 241 MIDAYGRAGNVEMAF 255
+ + R G+ + A+
Sbjct: 146 ALFGFCRKGDADKAY 160
>pdb|3VC5|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833 Complexed With
Phosphate
pdb|3VC6|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833 Complexed With
Magnesium And Formate
pdb|4DHG|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
pdb|4DHG|B Chain B, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
pdb|4DHG|C Chain C, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
pdb|4DHG|D Chain D, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
Length = 441
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 16/137 (11%)
Query: 288 GCLNVYEE---MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
G N+Y + ++ + V P LL+ G +PW ++TI + +TD G++ TY
Sbjct: 14 GTENLYFQSMLIREVRVTPVAFRDPPLLNAAG-VHQPWALRTIVEVVTDEGITGLGETYG 72
Query: 345 SL-----LRAYGRARYGEDTLS---VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
L +RA G D + +YR + + VT + L + V D F
Sbjct: 73 DLAHLEQVRAAAARLPGLDVYALHRIYRRVADVVGANIVTDMHGLTGSSSRVKTVDRVFA 132
Query: 397 IFE----DMKSSENCQP 409
FE D++ +P
Sbjct: 133 AFEVACLDIQGKAAGRP 149
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 34/171 (19%)
Query: 462 TDDVVRALN-------RLPELGITPDDRFCGCL--LNVMTQTPKEELGKLVECVEKSNSK 512
TD ++ LN RL E+ I + L ++T+T E++ +E + + SK
Sbjct: 1 TDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSK 60
Query: 513 LGYVVKLLLEEQDIEGDFKKEATELFNSIS--------------KDVKKAYCNCLIDLCV 558
+VVK ++DI ++ EL I+ D+K N L +
Sbjct: 61 GVFVVKQ--SDEDIHTANERRLKELIGDIAGKLNTGRSRNDQVVTDLKLFMKNSLSIIST 118
Query: 559 NL-----NLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 604
+L L+E A +E+ + L YT++Q P +WS L LS ALT
Sbjct: 119 HLLQLIKTLVERAA--IEIDVILPGYTNLQKAQPIRWSQFL--LSHAVALT 165
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 34/171 (19%)
Query: 462 TDDVVRALN-------RLPELGITPDDRFCGCL--LNVMTQTPKEELGKLVECVEKSNSK 512
TD ++ LN RL E+ I + L ++T+T E++ +E + + SK
Sbjct: 19 TDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSK 78
Query: 513 LGYVVKLLLEEQDIEGDFKKEATELFNSIS--------------KDVKKAYCNCLIDLCV 558
+VVK ++DI ++ EL I+ D+K N L +
Sbjct: 79 GVFVVKQ--SDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIIST 136
Query: 559 NL-----NLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 604
+L L+E A +E+ + L YT +Q P +WS L LS ALT
Sbjct: 137 HLLQLIKTLVERAA--IEIDVILPGYTHLQKAQPIRWSQFL--LSHAVALT 183
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 34/171 (19%)
Query: 462 TDDVVRALN-------RLPELGITPDDRFCGCL--LNVMTQTPKEELGKLVECVEKSNSK 512
TD ++ LN RL E+ I + L ++T+T E++ +E + + SK
Sbjct: 19 TDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSK 78
Query: 513 LGYVVKLLLEEQDIEGDFKKEATELFNSIS--------------KDVKKAYCNCLIDLCV 558
+VVK ++DI ++ EL I+ D+K N L +
Sbjct: 79 GVFVVKQ--SDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIIST 136
Query: 559 NL-----NLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 604
+L L+E A +E+ + L YT +Q P +WS L LS ALT
Sbjct: 137 HLLQLIKTLVERAA--IEIDVILPGYTHLQKAQPIRWSQFL--LSHAVALT 183
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm) In Complex With Sulfate
Length = 472
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 34/171 (19%)
Query: 462 TDDVVRALN-------RLPELGITPDDRFCGCL--LNVMTQTPKEELGKLVECVEKSNSK 512
TD ++ LN RL E+ I + L ++T+T E++ +E + + SK
Sbjct: 17 TDPIMEKLNSSIAYDQRLSEVDIQASIAYAKALEKAGILTKTELEKILSGLEKISEEWSK 76
Query: 513 LGYVVKLLLEEQDIEGDFKKEATELFNSIS--------------KDVKKAYCNCLIDLCV 558
+VVK ++DI ++ EL I+ D+K N L +
Sbjct: 77 GVFVVKQ--SDEDIHTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIIST 134
Query: 559 NL-----NLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 604
+L L+E A +E+ + L YT +Q P +WS L LS ALT
Sbjct: 135 HLLQLIKTLVERAA--IEIDVILPGYTHLQKAQPIRWSQFL--LSHAVALT 181
>pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70
A Resolution
pdb|3P6K|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
pdb|3P6K|B Chain B, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
Length = 375
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV 196
I +NN NP A TY ++ + EV Y ++ +V+R +LD + ++ D+G+
Sbjct: 158 ICINNANNPTGAVXDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSII--EVYDKGI 215
Query: 197 KPDNVTFSTLISCARMN 213
++++ + + R+
Sbjct: 216 AVNSLSXTYSLPGIRIG 232
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 34/171 (19%)
Query: 462 TDDVVRALN-------RLPELGITPDDRFCGCL--LNVMTQTPKEELGKLVECVEKSNSK 512
TD ++ LN RL E+ I + L ++T+T E++ +E + + SK
Sbjct: 19 TDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSK 78
Query: 513 LGYVVKLLLEEQDIEGDFKKEATELFNSIS--------------KDVKKAYCNCLIDLCV 558
+VVK ++DI ++ EL I+ D+K N L +
Sbjct: 79 GVFVVKQ--SDEDINTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIIST 136
Query: 559 NL-----NLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 604
+L L+E A +E+ + L YT +Q P +WS L LS ALT
Sbjct: 137 HLLQLIKTLVERAA--IEIDVILPGYTHLQKAQPIRWSQFL--LSHAVALT 183
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 29/157 (18%)
Query: 470 NRLPELGITPDDRFCGCL--LNVMTQTPKEELGKLVECVEKSNSKLGY-VVKLLLEEQDI 526
RL E+ I + L ++T+T EL K++ +EK + +L V+ + ++DI
Sbjct: 32 QRLSEVDIQASIAYAKALEKAGILTKT---ELEKILSGLEKISEELSKGVIVVTQSDEDI 88
Query: 527 EGDFKKEATELFNSIS--------------KDVKKAYCNCLIDLCVNL-----NLLENAC 567
+ ++ EL I+ D+K N L + +L L+E A
Sbjct: 89 QTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAA 148
Query: 568 KLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 604
+E+ + L YT +Q P +WS L LS ALT
Sbjct: 149 --IEIDVILPGYTHLQKAQPIRWSQFL--LSHAVALT 181
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 32/75 (42%)
Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
L + +F + V P+ TF+ A + P A + ++ +FG P +Y
Sbjct: 86 LSRGFDIFKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGP 145
Query: 241 MIDAYGRAGNVEMAF 255
+ + R G+ + A+
Sbjct: 146 ALFGFCRKGDADKAY 160
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA---------FEIFEDMKSSENCQ 408
+ L +Y E + G+QLS YN LL +C+ E+ F+IF+ +
Sbjct: 44 EALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFK-QXIVDKVV 102
Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
P+ TF++ + + A + G +P L
Sbjct: 103 PNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRL 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,589,647
Number of Sequences: 62578
Number of extensions: 852614
Number of successful extensions: 1874
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1863
Number of HSP's gapped (non-prelim): 24
length of query: 695
length of database: 14,973,337
effective HSP length: 106
effective length of query: 589
effective length of database: 8,340,069
effective search space: 4912300641
effective search space used: 4912300641
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)