BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005474
(695 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390,
chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3
Length = 702
Score = 966 bits (2497), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/684 (66%), Positives = 553/684 (80%), Gaps = 5/684 (0%)
Query: 10 CSLFST-PKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHG 68
C+L S PK R+F S+ + S F+S+ LQ VS+QE + + P
Sbjct: 21 CNLLSVYPKSTPRSFLSSYNPNSS-HFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIP 79
Query: 69 KTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGD 128
+ +S KSY+WVNPKSPRAS+L+ KSYD+RY+SL+KLA LD+C E DV V+ G
Sbjct: 80 EPTAS-KSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDACKPNEADVCDVITGFGG 138
Query: 129 DFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLF 188
EQD V+ LNNMTNP+TA L L +K S+EVILYNVTMKVFRK +DL+K+E+LF
Sbjct: 139 KLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLF 198
Query: 189 DDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
D+ML+RG+KPDN TF+T+ISCAR N +P +AVEWFE+M SFGC+PD +T ++MIDAYGRA
Sbjct: 199 DEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRA 258
Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
GNV+MA LYDRAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++ Y
Sbjct: 259 GNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIY 318
Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
N L+D+MGRAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREMKE
Sbjct: 319 NRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKE 378
Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
KG+ L+V LYNTLL+MCAD Y DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+VS
Sbjct: 379 KGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVS 438
Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
EAEA +M EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGCLL
Sbjct: 439 EAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLL 498
Query: 489 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDVKK 547
NVMTQTP EE+GKL+ CVEK+ KLG VVK+L+EEQ+ EG FKKEA+EL +SI DVKK
Sbjct: 499 NVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKK 558
Query: 548 AYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALH 607
AY NCLIDLCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTALH
Sbjct: 559 AYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALH 618
Query: 608 IWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 666
+W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVG
Sbjct: 619 VWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVG 678
Query: 667 WFLTTEAAAKSWLESRSSLVSVPA 690
WFLTT AAK+WLESR S V A
Sbjct: 679 WFLTTSVAAKAWLESRRSAGGVSA 702
>sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580,
chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2
SV=1
Length = 711
Score = 466 bits (1199), Expect = e-130, Method: Compositional matrix adjust.
Identities = 249/620 (40%), Positives = 374/620 (60%), Gaps = 12/620 (1%)
Query: 72 SSPKSYIWVNPKSPRASKL---KEK----SYDTRYNSLVKLAADLDSCSATEDDVF-SVL 123
S PKS +WVNP P+ S L ++K SY+ + L A L+S TE F S+L
Sbjct: 86 SKPKS-VWVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLRAFALKLNSSIFTEKSEFLSLL 144
Query: 124 RCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDK 183
+ + +++LN++ + +K E I YNVTMK R R
Sbjct: 145 DEIPHPPNRDNALLVLNSLREWQKTHTFFNWVKSKSLFPMETIFYNVTMKSLRFGRQFQL 204
Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
E + +M+ GV+ DN+T+ST+I+CA+ NL NKA+EWFERM G PD +TYS+++D
Sbjct: 205 IEEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILD 264
Query: 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303
Y ++G VE LY+RA W+ D AFS L K++G AG++DG V +EMK++ VKP
Sbjct: 265 VYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKP 324
Query: 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363
N++ YN LL+ MGRA +P ++++ EM + GL+PN T +L++ YG+AR+ D L ++
Sbjct: 325 NVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLW 384
Query: 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423
EMK K + LYNTLL MCAD+G +EA +F DMK S C+PD++++++M+ I
Sbjct: 385 EEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGS 444
Query: 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
GK +A +F EML+AG + N+ T L+QC GKA+R DDVV + + G+ PDDR
Sbjct: 445 GGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRL 504
Query: 484 CGCLLNVMTQ-TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 542
CGCLL+VM E+ K++ C+E++N KL V L+++E+ K+E + N+
Sbjct: 505 CGCLLSVMALCESSEDAEKVMACLERANKKLVTFVNLIVDEKTEYETVKEEFKLVINATQ 564
Query: 543 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAA 602
+ ++ +CNCLID+C N E A +LL LG +Y + +++ +WSL ++SLS+GAA
Sbjct: 565 VEARRPFCNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAA 624
Query: 603 LTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSP 662
TAL W+ L+ ++ EE P L TG G H++S +GLA+ F HL++L+APF S
Sbjct: 625 ETALEEWMRTLANIIKRQEELPELFLAQTGTGTHRFS-QGLANSFALHLQQLSAPFRQS- 682
Query: 663 DKVGWFLTTEAAAKSWLESR 682
D+ G F+ T+ SWLES+
Sbjct: 683 DRPGIFVATKEDLVSWLESK 702
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 145/587 (24%), Positives = 262/587 (44%), Gaps = 76/587 (12%)
Query: 165 VILYNVTMKVFRKC-RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
++ YN + K + + + FD+M GV+PD +TF++L++ L A F
Sbjct: 303 LVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLF 362
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
+ M + + D +Y++++DA + G +++AF + A+ RI PN ++ST+I +
Sbjct: 363 DEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEIL--AQMPVKRIMPNVVSYSTVIDGFA 420
Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
AG FD LN++ EM+ +G+ + ++YN LL + R + I +EM G+ +
Sbjct: 421 KAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVV 480
Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
TY +LL YG+ ++ V+ EMK + + ++ Y+TL+ + G EA EIF +
Sbjct: 481 TYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREF 540
Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
KS+ + D +S++I G V A ++ +EM + G PN+ S+I +G++
Sbjct: 541 KSA-GLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSAT 599
Query: 462 TDDVV------------------------RALNRLPELGITPDDRFC----------GCL 487
D R + +L ++R C+
Sbjct: 600 MDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCI 659
Query: 488 LNVMTQTPK-----------------------EELGKLVECVEKSNSKL-GYVVKLLLEE 523
L V + + E+ L+E + ++K+ G V LL+ +
Sbjct: 660 LEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMGQ 719
Query: 524 QDIEGDFKKEATELF---NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT 580
++ + +A LF N + A+ N L D+ + A + G + +V+
Sbjct: 720 RE---NVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSRQVWE 776
Query: 581 DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHK--Y 638
++ S S L L +S GAA +H W+ ++ + G E P +L I TG GKH
Sbjct: 777 NVWSDS----CLDLHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSKVV 832
Query: 639 SDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSL 685
D L E L+ ++APFH S +G F ++ + +WL ++L
Sbjct: 833 GDGALRRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATWLRESATL 879
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 150/300 (50%), Gaps = 2/300 (0%)
Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
++A +F+ M + G++P+ VT++ +I +C + + ++F+ M G PD +T++S
Sbjct: 285 EEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNS 344
Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
++ R G E A L+D N + D +++TL+ G D + +M
Sbjct: 345 LLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKR 404
Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
+ PN+++Y+ ++D +A R + ++ EM G++ + +Y +LL Y + E+ L
Sbjct: 405 IMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEAL 464
Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
+ REM G++ V YN LL G DE ++F +MK E+ P+ T+S++I
Sbjct: 465 DILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMK-REHVLPNLLTYSTLIDG 523
Query: 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
S G EA +F E AG ++ + ++LI K V ++ + + GI+P+
Sbjct: 524 YSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPN 583
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 111/496 (22%), Positives = 212/496 (42%), Gaps = 48/496 (9%)
Query: 43 KRSVSLQETQSSNPTKHSQNPQYPHGKTGSS---------PKSYIWVNP----KSPRASK 89
++S ++N + QNP Y H G+S P S V P + P S
Sbjct: 65 RQSTRFVSPATNNHRQTRQNPNYNHRPYGASSSPRGSAPPPSSVATVAPAQLSQPPNFSP 124
Query: 90 LKEKSYD----------TRYNSLV-----KLAADLDSCSATEDDVFSVLRCLGDDFL--- 131
L+ D TR+ S + K SA ED + + + GDD +
Sbjct: 125 LQTPKSDLSSDFSGRRSTRFVSKMHFGRQKTTMATRHSSAAEDALQNAIDFSGDDEMFHS 184
Query: 132 -----------EQDCVIILNNMTNPDTAALALTYFTNKLKASK----EVILYNVTMKVFR 176
DC I+ + N + A+ ++ +K + + L + +
Sbjct: 185 LMLSFESKLCGSDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLG 244
Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
+ + A+R+F+ G FS LIS + L +A+ F M +G P+ +
Sbjct: 245 RYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLV 304
Query: 237 TYSSMIDAYGRAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
TY+++IDA G+ G + +D + + D F++L+ + G ++ N+++E
Sbjct: 305 TYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDE 364
Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
M ++ ++ +YN LLD + + + I +M + PN +Y++++ + +A
Sbjct: 365 MTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGR 424
Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 415
++ L+++ EM+ G+ L YNTLL++ VG ++EA +I +M +S + D T++
Sbjct: 425 FDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREM-ASVGIKKDVVTYN 483
Query: 416 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475
+++ +GK E + +F EM PNL ++LI Y K + +
Sbjct: 484 ALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSA 543
Query: 476 GITPDDRFCGCLLNVM 491
G+ D L++ +
Sbjct: 544 GLRADVVLYSALIDAL 559
Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 161/339 (47%), Gaps = 8/339 (2%)
Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
S+MI GR G V +A +++ A + AFS LI YG +G + ++V+ MK
Sbjct: 237 SAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE 296
Query: 299 IGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
G++PN++TYN ++D G+ + QV + EM NG+ P+ T+ SLL R E
Sbjct: 297 YGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWE 356
Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
+++ EM + ++ V YNTLL G D AFEI M + P+ ++S++
Sbjct: 357 AARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMP-VKRIMPNVVSYSTV 415
Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
I + G+ EA +F EM G + +L+ Y K R+++ + L + +GI
Sbjct: 416 IDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGI 475
Query: 478 TPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536
D LL + K +E+ K+ +++ + + L + +G KEA E
Sbjct: 476 KKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAME 535
Query: 537 LFNSISKDVKKA---YCNCLID-LCVNLNLLENACKLLE 571
+F +A + LID LC N L+ +A L++
Sbjct: 536 IFREFKSAGLRADVVLYSALIDALCKN-GLVGSAVSLID 573
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 169 bits (427), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 173/353 (49%), Gaps = 36/353 (10%)
Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
S + + YN + V+ K +A ++ ++M+ G P VT+++LIS + + ++A+E
Sbjct: 311 SYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAME 370
Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
+M G PD TY++++ + RAG VE A +++ RN + + F+ IK+YG
Sbjct: 371 LKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYG 430
Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
G F + +++E+ G+ P+++T+N LL G+ +V ++KEM G P
Sbjct: 431 NRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERE 490
Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
T+ +L+ AY R E ++VYR M + G+ ++ YNT+LA A G +++ ++ +M
Sbjct: 491 TFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM 550
Query: 402 KSSENCQPDSWTFSS-----------------------------------MITICSCRGK 426
+ C+P+ T+ S ++ +CS
Sbjct: 551 EDGR-CKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDL 609
Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
+ EAE F+E+ E GF P++ L S++ YG+ Q L+ + E G TP
Sbjct: 610 LPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTP 662
Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 160/325 (49%), Gaps = 2/325 (0%)
Query: 170 VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
+ + + K + A +F+ + + G D ++++LIS + +AV F++M
Sbjct: 178 IIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEED 237
Query: 230 GCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
GC P +TY+ +++ +G+ G L ++ +++ D ++TLI
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297
Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
V+EEMKA G + +TYN LLD G++ RP + + EM NG SP+ TY SL+
Sbjct: 298 AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLIS 357
Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
AY R ++ + + +M EKG + V Y TLL+ G + A IFE+M+++ C+
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNA-GCK 416
Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
P+ TF++ I + RGK +E +F+E+ G P++ +L+ +G+ +V
Sbjct: 417 PNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGV 476
Query: 469 LNRLPELGITPDDRFCGCLLNVMTQ 493
+ G P+ L++ ++
Sbjct: 477 FKEMKRAGFVPERETFNTLISAYSR 501
Score = 129 bits (323), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 163/339 (48%), Gaps = 40/339 (11%)
Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
+L +A +WF + + D + +I G+ G V A +++ + + + +D ++
Sbjct: 152 DLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSY 211
Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMT 332
++LI + +G + +NV+++M+ G KP +ITYN +L+ G+ PW ++ ++ ++M
Sbjct: 212 TSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMK 271
Query: 333 DNGLSPN---WN--------------------------------TYASLLRAYGRARYGE 357
+G++P+ +N TY +LL YG++ +
Sbjct: 272 SDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPK 331
Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
+ + V EM G S+ YN+L++ A G DEA E+ M + + +PD +T++++
Sbjct: 332 EAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQM-AEKGTKPDVFTYTTL 390
Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
++ GKV A ++F EM AG +PN+ + I+ YG + ++++ + + G+
Sbjct: 391 LSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGL 450
Query: 478 TPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYV 516
+PD LL V Q + V V K + G+V
Sbjct: 451 SPDIVTWNTLLAVFGQN---GMDSEVSGVFKEMKRAGFV 486
Score = 96.3 bits (238), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 146/325 (44%), Gaps = 13/325 (4%)
Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
S +++ +N + VF + + +F +M G P+ TF+TLIS +A+
Sbjct: 451 SPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMT 510
Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKL 279
+ RM G PD TY++++ A R G E + + A E R PN + +L+
Sbjct: 511 VYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVL--AEMEDGRCKPNELTYCSLLHA 568
Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
Y ++ EE+ + ++P + L+ + + + + E+ + G SP+
Sbjct: 569 YANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPD 628
Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM---CADVGYTDEAF- 395
T S++ YGR + V MKE+G S+ YN+L+ M AD G ++E
Sbjct: 629 ITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILR 688
Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
EI ++ +PD +++++I ++ +A +F+EM +G P++ + I
Sbjct: 689 EIL-----AKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGS 743
Query: 456 YGKAQRTDDVVRALNRLPELGITPD 480
Y ++ + + + + G P+
Sbjct: 744 YAADSMFEEAIGVVRYMIKHGCRPN 768
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 116/245 (47%), Gaps = 2/245 (0%)
Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFE 224
+ Y + + +++ L +++ ++P V TL+ C++ + LP +A F
Sbjct: 560 LTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLP-EAERAFS 618
Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
+ G PD T +SM+ YGR V A G+ D + + +++L+ ++ +
Sbjct: 619 ELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSA 678
Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
+F + E+ A G+KP++I+YN ++ R R I+ EM ++G+ P+ TY
Sbjct: 679 DFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYN 738
Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
+ + +Y E+ + V R M + G + + YN+++ + DEA ED+++
Sbjct: 739 TFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNL 798
Query: 405 ENCQP 409
+ P
Sbjct: 799 DPHAP 803
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
++I YN + + + + A R+F +M + G+ PD +T++T I +++ +A+
Sbjct: 698 DIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVV 757
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
M GC P+ TY+S++D Y + + A + RN +DP+A
Sbjct: 758 RYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRN----LDPHA 802
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 15/198 (7%)
Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL-SVYREMKEKGMQL 373
+G+++ P + K + +GLSP +LR+ + L SV E+ E
Sbjct: 78 IGKSRDP----NLGKPWSYHGLSPQGQ---QVLRSLIEPNFDSGQLDSVLSELFEPFKDK 130
Query: 374 SVTLYNTLLAMCADVGYT---DEAFEIFEDMKSSENCQP--DSWTFSSMITICSCRGKVS 428
+ + LLA +G+ D A F+ ++ Q D+ + +I++ G+VS
Sbjct: 131 PESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVS 190
Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
A MFN + E GF +++ TSLI + + R + V ++ E G P +L
Sbjct: 191 SAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVIL 250
Query: 489 NVMTQ--TPKEELGKLVE 504
NV + TP ++ LVE
Sbjct: 251 NVFGKMGTPWNKITSLVE 268
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 114/496 (22%), Positives = 224/496 (45%), Gaps = 16/496 (3%)
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
G K D T++T++ + + M GC P+ +TY+ +I +YGRA + A
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418
Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
++++ + + D + TLI ++ AG D +++Y+ M+A G+ P+ TY+ +++
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478
Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
+G+A ++ EM D G +PN TY ++ + +AR ++ L +YR+M+ G +
Sbjct: 479 LGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPD 538
Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
Y+ ++ + GY +EA +F +M+ +N PD + ++ + G V +A +
Sbjct: 539 KVTYSIVMEVLGHCGYLEEAEAVFTEMQQ-KNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597
Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ- 493
ML AG PN+ SL+ + + + + L + LG+ P + LL+ T
Sbjct: 598 QAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDG 657
Query: 494 TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----DFKKEAT---ELFNSISKDVK 546
K ++G + + + G+ + L + G + + A +L +S ++ K
Sbjct: 658 RSKLDMGFCGQLMAST----GHPAHMFLLKMPAAGPDGENVRNHANNFLDLMHSEDRESK 713
Query: 547 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTA 605
+ + ++D E A + E+ V+ D ++ +S + W ++L +S G A+TA
Sbjct: 714 RGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTA 773
Query: 606 LHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELNAPFHDSPD 663
L + K + + P + I TG G+ + E L +PF
Sbjct: 774 LSRTLAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFFTESG 833
Query: 664 KVGWFLTTEAAAKSWL 679
G F+ + WL
Sbjct: 834 NSGCFVGSGEPLNRWL 849
Score = 109 bits (273), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 152/329 (46%), Gaps = 11/329 (3%)
Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
+N RID + ++K GN G Y + G K + TY ++ +GRAK+
Sbjct: 323 QNLGLRIDAYQANQVLKQMNDYGNALGFF--YWLKRQPGFKHDGHTYTTMVGNLGRAKQF 380
Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
+ + EM +G PN TY L+ +YGRA Y + ++V+ +M+E G + Y TL
Sbjct: 381 GAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTL 440
Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
+ + A G+ D A ++++ M++ PD++T+S +I G + A +F EM++ G
Sbjct: 441 IDIHAKAGFLDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 499
Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 501
PNL ++ + KA+ + ++ + G PD ++ V+ E +
Sbjct: 500 CTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAE 559
Query: 502 LV--ECVEKS----NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID 555
V E +K+ G +V L + ++E ++ L + +V CN L+
Sbjct: 560 AVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPT--CNSLLS 617
Query: 556 LCVNLNLLENACKLLELGLTLEVYTDIQS 584
+ +N + A +LL+ L L + +Q+
Sbjct: 618 TFLRVNKIAEAYELLQNMLALGLRPSLQT 646
Score = 96.3 bits (238), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 2/187 (1%)
Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAV 220
S + Y+V + K L A +LF +M+D+G P+ VT++ ++ A+ N N A+
Sbjct: 466 SPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQN-AL 524
Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
+ + M + G +PD +TYS +++ G G +E A ++ + + W D + L+ L+
Sbjct: 525 KLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLW 584
Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
G AGN + Y+ M G++PN+ T N+LL T R + + + + M GL P+
Sbjct: 585 GKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSL 644
Query: 341 NTYASLL 347
TY LL
Sbjct: 645 QTYTLLL 651
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 8/226 (3%)
Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFE 224
+ Y + + K LD A ++ M G+ PD T+S +I+C + +LP A + F
Sbjct: 435 VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLP-AAHKLFC 493
Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
M GC P+ +TY+ M+D + +A N + A LY +N + D +S ++++ G G
Sbjct: 494 EMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCG 553
Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA---KRPWQVKTIYKEMTDNGLSPNWN 341
+ V+ EM+ P+ Y L+D G+A ++ WQ Y+ M GL PN
Sbjct: 554 YLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQ---WYQAMLHAGLRPNVP 610
Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
T SLL + R + + + M G++ S+ Y LL+ C D
Sbjct: 611 TCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTD 656
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/515 (23%), Positives = 219/515 (42%), Gaps = 35/515 (6%)
Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
Y + + + + +L D+M+ G KP+ VT++ LI N +A+ F +M
Sbjct: 362 YTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQ 421
Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
GC+PD +TY ++ID + +AG +++A +Y R + D +S +I G AG+
Sbjct: 422 EAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLP 481
Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
++ EM G PN++T+N ++ +A+ +Y++M + G P+ TY+ ++
Sbjct: 482 AAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVM 541
Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
G + E+ V+ EM+ K +Y L+ + G D+A++ ++ M +
Sbjct: 542 EVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQA-GL 600
Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
+P+ T +S+++ ++SEA + ML G P+L T L+ C A+ D+
Sbjct: 601 RPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFDM-- 658
Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIE 527
FCG L+ V L K+ +V L
Sbjct: 659 --------------GFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFL------- 697
Query: 528 GDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRS 586
+ +S ++ K+ + ++D L E A + E+ VY D ++ +S
Sbjct: 698 --------DFMHSEDRESKRGLMDAVVDFLHKSGLKEEAGSVWEVAAGKNVYPDALREKS 749
Query: 587 PTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLA 644
+ W ++L +S G A+ AL + K + + P + I TG G+ +
Sbjct: 750 YSYWLINLHVMSEGTAVIALSRTLAWFRKQMLVSGDCPSRIDIVTGWGRRSRVTGTSMVR 809
Query: 645 SVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWL 679
E L N PF G F+ + K+WL
Sbjct: 810 QAVEELLNIFNFPFFTENGNSGCFVGSGEPLKNWL 844
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 95/193 (49%)
Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
S + Y+V + K L A RLF +M+ +G P+ VTF+ +I+ A++
Sbjct: 461 SPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALK 520
Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
+ M + G PD +TYS +++ G G +E A G++ + + W D + L+ L+G
Sbjct: 521 LYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWG 580
Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
AGN D Y+ M G++PN+ T N+LL T R R + + + M GL P+
Sbjct: 581 KAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQ 640
Query: 342 TYASLLRAYGRAR 354
TY LL AR
Sbjct: 641 TYTLLLSCCTDAR 653
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 175/353 (49%), Gaps = 12/353 (3%)
Query: 134 DCVIILNNMTN-PDTAALA--LTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDD 190
D ++N +++ P ++A L F NKL + + + K F D ++ RLF
Sbjct: 75 DVESLINKLSSLPPRGSIARCLDIFKNKLSLND----FALVFKEFAGRGDWQRSLRLFKY 130
Query: 191 MLDRGV--KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
M R + KP+ ++ +IS L +K +E F+ MPS G +Y+++I+AYGR
Sbjct: 131 M-QRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRN 189
Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNMIT 307
G E + L DR +NEK ++T+I G +++G L ++ EM+ G++P+++T
Sbjct: 190 GRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVT 249
Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367
YN LL + + +++ M D G+ P+ TY+ L+ +G+ R E + EM
Sbjct: 250 YNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMA 309
Query: 368 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427
G +T YN LL A G EA +F M+++ C P++ T+S ++ + G+
Sbjct: 310 SGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA-GCTPNANTYSVLLNLFGQSGRY 368
Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
+ +F EM + +P+ LI+ +G+ +VV + + E I PD
Sbjct: 369 DDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPD 421
Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 120/519 (23%), Positives = 226/519 (43%), Gaps = 56/519 (10%)
Query: 164 EVILYNVTMKVFRKCRDL-DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222
+++ YN + R L D+AE +F M D G+ PD T+S L+ K +
Sbjct: 246 DIVTYNTLLSAC-AIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDL 304
Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
M S G PD +Y+ +++AY ++G+++ A G++ + + + N +S L+ L+G
Sbjct: 305 LGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQ 364
Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
+G +D ++ EMK+ P+ TYN L++ G +V T++ +M + + P+ T
Sbjct: 365 SGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMET 424
Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
Y ++ A G+ ED + + M + S Y ++ +EA F M
Sbjct: 425 YEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMH 484
Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
P TF S++ + G V E+EA+ + ++++G N + I+ Y + +
Sbjct: 485 EV-GSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKF 543
Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV-ECVEKSN---------SK 512
++ V+ + + PD+R +L+V + +LV EC E+ S
Sbjct: 544 EEAVKTYVDMEKSRCDPDERTLEAVLSVYS------FARLVDECREQFEEMKASDILPSI 597
Query: 513 LGYVVKL--------------LLEE--------------QDIEGDFKKEAT--------E 536
+ Y + L LLEE Q I+GD+ ++ +
Sbjct: 598 MCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLD 657
Query: 537 LFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKS 596
NS + + N L+D L E A ++L ++ ++ ++ WS+ +
Sbjct: 658 KLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFPELFRKNKLVWSVDVHR 717
Query: 597 LSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGK 635
+S G TAL +W+ND++ L G + P L + + G+
Sbjct: 718 MSEGGMYTALSVWLNDINDMLLKG-DLPQLAVVVSVRGQ 755
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 157/324 (48%), Gaps = 3/324 (0%)
Query: 160 KASKEVILYNVTMKV-FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
K S ++ YN + R D + LF +M G++PD VT++TL+S + L ++
Sbjct: 206 KISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDE 265
Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
A F M G PD TYS +++ +G+ +E L + D +++ L++
Sbjct: 266 AEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLE 325
Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
Y +G+ + V+ +M+A G PN TY+ LL+ G++ R V+ ++ EM + P
Sbjct: 326 AYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDP 385
Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
+ TY L+ +G Y ++ ++++ +M E+ ++ + Y ++ C G ++A +I
Sbjct: 386 DAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKIL 445
Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458
+ M ++ + P S ++ +I EA FN M E G P++ SL+ + +
Sbjct: 446 QYM-TANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFAR 504
Query: 459 AQRTDDVVRALNRLPELGITPDDR 482
+ L+RL + GI P +R
Sbjct: 505 GGLVKESEAILSRLVDSGI-PRNR 527
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 115/283 (40%), Gaps = 19/283 (6%)
Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD 180
++ G L +D IL MT D + Y T ++A + LY
Sbjct: 427 GIIFACGKGGLHEDARKILQYMTANDIVPSSKAY-TGVIEAFGQAALY------------ 473
Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
++A F+ M + G P TF +L+ L ++ R+ G + T+++
Sbjct: 474 -EEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNA 532
Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKA 298
I+AY + G E A Y EK R DP+ ++ +Y A D C +EEMKA
Sbjct: 533 QIEAYKQGGKFEEAVKTY--VDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKA 590
Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGE 357
+ P+++ Y +L G+ +R V + +EM N +S +++ Y +
Sbjct: 591 SDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQ 650
Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
V ++ +G L + YN LL +G + A + +
Sbjct: 651 IVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNE 693
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 167/332 (50%), Gaps = 5/332 (1%)
Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
+ S V YN+ ++ F ++D A LFD M +G P+ VT++TLI +
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIK 278
+ M G +P+ ++Y+ +I+ R G + E++F L + R + +D ++TLIK
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNR-RGYSLDEVTYNTLIK 318
Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
Y GNF L ++ EM G+ P++ITY +L+ +M +A + +M GL P
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCP 378
Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
N TY +L+ + + Y + V REM + G SV YN L+ G ++A +
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVL 438
Query: 399 EDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
EDMK + PD ++S++++ CR V EA + EM+E G +P+ +SLIQ +
Sbjct: 439 EDMK-EKGLSPDVVSYSTVLS-GFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496
Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
+ +RT + + +G+ PD+ L+N
Sbjct: 497 EQRRTKEACDLYEEMLRVGLPPDEFTYTALIN 528
Score = 126 bits (316), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 156/321 (48%), Gaps = 9/321 (2%)
Query: 165 VILYNVTMKVFRKCRD--LDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAV 220
+I YNV + CR+ + + + +M RG D VT++TLI C N ++A+
Sbjct: 275 LISYNVVINGL--CREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGN--FHQAL 330
Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
M G P +TY+S+I + +AGN+ A D+ R + ++TL+ +
Sbjct: 331 VMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGF 390
Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
G + V EM G P+++TYN L++ + + ++M + GLSP+
Sbjct: 391 SQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDV 450
Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
+Y+++L + R+ ++ L V REM EKG++ Y++L+ + T EA +++E+
Sbjct: 451 VSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEE 510
Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
M PD +T++++I G + +A + NEM+E G P++ + LI K
Sbjct: 511 MLRV-GLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQS 569
Query: 461 RTDDVVRALNRLPELGITPDD 481
RT + R L +L P D
Sbjct: 570 RTREAKRLLLKLFYEESVPSD 590
Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 151/315 (47%), Gaps = 2/315 (0%)
Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFER 225
++++ +K + + +DKA + G P ++++ ++ + R + A F+
Sbjct: 136 VFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKE 195
Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
M P+ TY+ +I + AGN+++A L+D+ + + ++TLI Y
Sbjct: 196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK 255
Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
D + M G++PN+I+YN +++ + R R +V + EM G S + TY +
Sbjct: 256 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNT 315
Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
L++ Y + L ++ EM G+ SV Y +L+ G + A E + M+
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375
Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
C P+ T+++++ S +G ++EA + EM + GF P++ +LI + + +D
Sbjct: 376 LC-PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDA 434
Query: 466 VRALNRLPELGITPD 480
+ L + E G++PD
Sbjct: 435 IAVLEDMKEKGLSPD 449
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 159/365 (43%), Gaps = 56/365 (15%)
Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
VI Y + K ++++A D M RG+ P+ T++TL+ N+A
Sbjct: 345 VITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLR 404
Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
M G P +TY+++I+ + G +E A + + + + D ++ST++ + +
Sbjct: 405 EMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSY 464
Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
+ D L V EM G+KP+ ITY++L+ +R + +Y+EM GL P+ TY
Sbjct: 465 DVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYT 524
Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSV----------------------------- 375
+L+ AY E L ++ EM EKG+ V
Sbjct: 525 ALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYE 584
Query: 376 ------TLYNTLLAMCADV---------------GYTDEAFEIFEDMKSSENCQPDSWTF 414
Y+TL+ C+++ G EA ++FE M +N +PD +
Sbjct: 585 ESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESM-LGKNHKPDGTAY 643
Query: 415 SSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALN 470
+ MI CR G + +A ++ EM+++GF + + +L++ GK + V+ +
Sbjct: 644 NIMIH-GHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVL 702
Query: 471 RLPEL 475
R EL
Sbjct: 703 RSCEL 707
Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 114/259 (44%), Gaps = 37/259 (14%)
Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYK 329
+ F ++K Y D L++ +A G P +++YN +LD R+KR + ++K
Sbjct: 135 SVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFK 194
Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
EM ++ +SPN TY L+R + A + L+++ +M+ KG +V YNTL+ +
Sbjct: 195 EMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLR 254
Query: 390 YTDEAFEIFEDMKSSENCQP-----------------------------------DSWTF 414
D+ F++ M + + +P D T+
Sbjct: 255 KIDDGFKLLRSM-ALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTY 313
Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
+++I G +A M EML G P++ TSLI KA + + L+++
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373
Query: 475 LGITPDDRFCGCLLNVMTQ 493
G+ P++R L++ +Q
Sbjct: 374 RGLCPNERTYTTLVDGFSQ 392
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 100/238 (42%), Gaps = 50/238 (21%)
Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
S +V+ Y+ + F + D+D+A R+ +M+++G+KPD +T+S+LI +A +
Sbjct: 447 SPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACD 506
Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD---------------------- 259
+E M G PD TY+++I+AY G++E A L++
Sbjct: 507 LYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLN 566
Query: 260 ---RARNEKW-------------------------RIDPNAFSTLIKLYGTAGNFDGCLN 291
R R K I+ + +LIK + G
Sbjct: 567 KQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQ 626
Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
V+E M KP+ YN ++ RA + T+YKEM +G + T +L++A
Sbjct: 627 VFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKA 684
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 50/194 (25%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCAR----------- 211
+V+ Y+V + K +A+RL + P +VT+ TLI +C+
Sbjct: 554 DVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIK 613
Query: 212 ---MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD--------- 259
M + +A + FE M PD Y+ MI + RAG++ A+ LY
Sbjct: 614 GFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLL 673
Query: 260 ---------RARNEKWRI-----------------DPNAFSTLIKLYGTAGNFDGCLNVY 293
+A +++ ++ + L+++ GN D L+V
Sbjct: 674 HTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVL 733
Query: 294 EEMKAIGVKPNMIT 307
EM G PN I+
Sbjct: 734 AEMAKDGFLPNGIS 747
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic
OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2
Length = 1440
Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 121/556 (21%), Positives = 248/556 (44%), Gaps = 53/556 (9%)
Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
+N M + +C ++A +F+ M+ G P + + L+ ++ + E +
Sbjct: 790 WNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQ 849
Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD-------------------------RAR 262
G + M+DA+ RAGN+ +Y R R
Sbjct: 850 DMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVR 909
Query: 263 NEK----------WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
+ + ++++ +++++K+Y ++ + VY+ +K G++P+ TYN L+
Sbjct: 910 DAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLI 969
Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
R +RP + + ++M + GL P +TY SL+ A+G+ + E ++ E+ KG++
Sbjct: 970 IMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLK 1029
Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
L + Y+T++ + D G +A ++ + MK++ +P T ++ S G EAE
Sbjct: 1030 LDRSFYHTMMKISRDSGSDSKAEKLLQMMKNA-GIEPTLATMHLLMVSYSSSGNPQEAEK 1088
Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
+ + + + E +S+I Y +++ + + L + + G+ PD R C + +
Sbjct: 1089 VLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAAS 1148
Query: 493 -QTPKEELGKLVECVEKSNSKLGYVVKLL-----LEEQDIEGDFKKEATELFNSISKDVK 546
K E+ L++ +E L ++LL L +++G F+K SI +
Sbjct: 1149 FSKEKIEVMLLLKALEDIGFDLP--IRLLAGRPELLVSEVDGWFEK-----LKSIEDNAA 1201
Query: 547 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTA 605
+ N L++L L A + +LG+ +++ D+ + W + LS GAAL A
Sbjct: 1202 LNFVNALLNLLWAFELRATASWVFQLGIKRGIFSLDVFRVADKDWGADFRRLSGGAALVA 1261
Query: 606 LHIWINDLSKA-LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 664
L +W++ + A LE E P + + TG +Y+ L ++ L E+ +PF +
Sbjct: 1262 LTLWLDHMQDASLEGYPESPKSVVLITGTA--EYNGISLDKTLKACLWEMGSPFLPCKTR 1319
Query: 665 VGWFLTTEAAAKSWLE 680
G + + + WL+
Sbjct: 1320 TGLLVAKAHSLRMWLK 1335
Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 144/277 (51%), Gaps = 2/277 (0%)
Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV--EMAFGLYDRARNEKWRIDPNAFS 274
+KA E + M GC PD ++++++I+A ++G + +A L D RN R D ++
Sbjct: 242 SKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYN 301
Query: 275 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
TL+ N DG + V+E+M+A +P++ TYN ++ GR + + ++ E+
Sbjct: 302 TLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELK 361
Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
G P+ TY SLL A+ R R E VY++M++ G YNT++ M G D A
Sbjct: 362 GFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLA 421
Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
++++DMK PD+ T++ +I + EA A+ +EML+ G +P L ++LI
Sbjct: 422 LQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALIC 481
Query: 455 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
Y KA + ++ + + G PD+ +L+V+
Sbjct: 482 GYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVL 518
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 123/247 (49%), Gaps = 3/247 (1%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
E+ ++N +K++ D K +++ + + G++PD T++TLI + P +
Sbjct: 926 ELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLM 985
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
++M + G DP TY S+I A+G+ +E A L++ ++ ++D + + T++K+ +
Sbjct: 986 QQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDS 1045
Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
G+ + + MK G++P + T + L+ + + P + + + + D + Y
Sbjct: 1046 GSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPY 1105
Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
+S++ AY R++ + EMK++G++ ++ + + ++ E E+ +K+
Sbjct: 1106 SSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAAS---FSKEKIEVMLLLKA 1162
Query: 404 SENCQPD 410
E+ D
Sbjct: 1163 LEDIGFD 1169
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 137/303 (45%), Gaps = 4/303 (1%)
Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
+ TL+ C N +A + F + GC+ SM+ Y + G E A + ++A
Sbjct: 684 YETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAE 743
Query: 263 NEKWRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
+ + + ++ +I+ YG + +V ++ G P++ T+N+L+ +
Sbjct: 744 TKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCY 803
Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
+ + I+ M +G SP + LL A E+ V E+++ G ++S + +
Sbjct: 804 ERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLM 863
Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEA 440
L A G E +I+ MK++ P + MI + C+GK V +AE M +EM EA
Sbjct: 864 LDAFARAGNIFEVKKIYSSMKAA-GYLPTIRLYRMMIELL-CKGKRVRDAEIMVSEMEEA 921
Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 500
F+ L + S+++ Y + V+ R+ E G+ PD+ L+ + + + E G
Sbjct: 922 NFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEG 981
Query: 501 KLV 503
L+
Sbjct: 982 YLL 984
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/410 (20%), Positives = 145/410 (35%), Gaps = 77/410 (18%)
Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD-RGVKPDNVTFSTLISCARMNNL 215
K+ K+ + YN + ++ K LD A +L+ DM G PD +T++ LI N
Sbjct: 394 QKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANR 453
Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
+A M G P TYS++I Y +AG E A + + D A+S
Sbjct: 454 TVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSV 513
Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR--------------- 320
++ + +Y +M + G P+ Y ++ + + R
Sbjct: 514 MLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELC 573
Query: 321 ---PWQVKTIY-------------KEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLS 361
P ++ ++ K NG +T S+L +Y GR + L
Sbjct: 574 GMNPLEISSVLVKGECFDLAARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLE 633
Query: 362 VYREMKEKGMQL----------------------------------SVTLYNTLLAMCAD 387
+E +L S T+Y TLL C
Sbjct: 634 FLKEHASGSKRLITEALIVLHCKVNNLSAALDEYFADPCVHGWCFGSSTMYETLLHCCVA 693
Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE---- 443
+ EA ++F D++ S C+ SM+ + G A + N+ GF
Sbjct: 694 NEHYAEASQVFSDLRLS-GCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACS 752
Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
P + T +I+ YGK + + L + G TPD + L++ Q
Sbjct: 753 P---MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQ 799
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 167/328 (50%), Gaps = 9/328 (2%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+++ YN + V+ K + +A L +M + GV P+ V++STL+S N+ +A+ F
Sbjct: 259 DLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVF 318
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYG 281
M C D T + MID YG+ V+ A L+ R K I+PN +++T++++YG
Sbjct: 319 AEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLR--KMDIEPNVVSYNTILRVYG 376
Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
A F ++++ M+ ++ N++TYN ++ G+ + + +EM G+ PN
Sbjct: 377 EAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAI 436
Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
TY++++ +G+A + +++++++ G+++ LY T++ VG A + ++
Sbjct: 437 TYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHEL 496
Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
K PD+ + ITI + G+ EA +F + E+G ++ V +I Y + QR
Sbjct: 497 K-----LPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQR 551
Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLN 489
+V+ ++ G PD +LN
Sbjct: 552 YVNVIEVFEKMRTAGYFPDSNVIAMVLN 579
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/507 (22%), Positives = 216/507 (42%), Gaps = 82/507 (16%)
Query: 107 ADLDSCSAT------EDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALT-YFTNKL 159
D+D A+ E ++FS+L D L ++ L + N +LAL + +
Sbjct: 90 VDMDELLASIHQTQNEKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEA 149
Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
K + V YNV ++ + + D A LFD+M R + PD T+STLI+ + + A
Sbjct: 150 KYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSA 209
Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
+ W ++M D + YS++I+ R + A ++ R + D A++++I +
Sbjct: 210 LSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINV 269
Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG---- 335
YG A F + +EM GV PN ++Y+ LL + + +++ EM +
Sbjct: 270 YGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALD 329
Query: 336 -------------------------------LSPNWNTYASLLRAYGRARYGEDTLSVYR 364
+ PN +Y ++LR YG A + + ++R
Sbjct: 330 LTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFR 389
Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
M+ K ++ +V YNT++ + ++A + ++M+ S +P++ T+S++I+I
Sbjct: 390 LMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQ-SRGIEPNAITYSTIISIWGKA 448
Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---------------------------- 456
GK+ A +F ++ +G E + + ++I Y
Sbjct: 449 GKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAI 508
Query: 457 ---GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL 513
KA RT++ + E G D GC++N+ ++ + ++E EK +
Sbjct: 509 TILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQR--YVNVIEVFEKMRTA- 565
Query: 514 GY-----VVKLLLEEQDIEGDFKKEAT 535
GY V+ ++L + +F+K T
Sbjct: 566 GYFPDSNVIAMVLNAYGKQREFEKADT 592
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 31/218 (14%)
Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
A+ L + + V+ YN +K++ K + +KA L +M RG++P+ +T+ST+IS
Sbjct: 384 AIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIIS 443
Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR--------------------- 247
++A F+++ S G + D + Y +MI AY R
Sbjct: 444 IWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIP 503
Query: 248 ----------AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
AG E A ++ +A D + F +I LY + + V+E+M+
Sbjct: 504 RETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMR 563
Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
G P+ +L+ G+ + + T+Y+EM + G
Sbjct: 564 TAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEG 601
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 13/205 (6%)
Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
SV YN +L D A +F++M+ PD +T+S++IT G A +
Sbjct: 154 SVFAYNVVLRNVLRAKQFDIAHGLFDEMRQ-RALAPDRYTYSTLITSFGKEGMFDSALSW 212
Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
+M + +L + ++LI+ + + +RL GITPD ++NV
Sbjct: 213 LQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVY-- 270
Query: 494 TPKEELGKLVECVEKSNSKLGYVVKLL----LEEQDIEGDFKKEATELFNSISKDVKKAY 549
K +L + + K ++ G + + L +E EA +F + K+V A
Sbjct: 271 -GKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEM-KEVNCAL 328
Query: 550 ----CNCLIDLCVNLNLLENACKLL 570
CN +ID+ L++++ A +L
Sbjct: 329 DLTTCNIMIDVYGQLDMVKEADRLF 353
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 168/334 (50%), Gaps = 5/334 (1%)
Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
AL+L K K +V++YN + K + +D A LF +M ++G++PD T+S+LIS
Sbjct: 242 ALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLIS 301
Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
C + A M +P+ +T+S++IDA+ + G + A LYD K I
Sbjct: 302 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI--KRSI 359
Query: 269 DPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
DP+ F S+LI + D +++E M + PN++TY+ L+ +AKR +
Sbjct: 360 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGME 419
Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
+++EM+ GL N TY +L+ + +AR ++ V+++M G+ ++ YN LL
Sbjct: 420 LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLC 479
Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
G +A +FE ++ S +PD +T++ MI GKV + +F + G PN+
Sbjct: 480 KNGKLAKAMVVFEYLQRS-TMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNV 538
Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
++I + + ++ L ++ E G P+
Sbjct: 539 IAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPN 572
Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 171/347 (49%), Gaps = 5/347 (1%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
I +N +LAL +K E ++ + + + + + A L D M++
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
G KPD TF+TLI ++N ++AV ++M GC PD +TY ++++ + G++++A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
L + K D ++T+I + D LN++ EM G++P++ TY++L+
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302
Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
+ R + +M + ++PN T+++L+ A+ + + +Y EM ++ +
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 362
Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAM 433
+ Y++L+ DEA +FE M S++C P+ T+S++I C + +V E +
Sbjct: 363 IFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYSTLIKGFCKAK-RVEEGMEL 420
Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
F EM + G N T+LI + +A+ D+ ++ +G+ P+
Sbjct: 421 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPN 467
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 146/283 (51%), Gaps = 1/283 (0%)
Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
K + V+ ++ + F K L +AE+L+D+M+ R + PD T+S+LI+ M++ ++A
Sbjct: 323 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 382
Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
FE M S C P+ +TYS++I + +A VE L+ + ++TLI
Sbjct: 383 KHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHG 442
Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
+ A + D V+++M ++GV PN++TYN LLD + + + + +++ + + + P+
Sbjct: 443 FFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPD 502
Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
TY ++ +A ED ++ + KG+ +V YNT+++ G +EA + +
Sbjct: 503 IYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLK 562
Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
MK + P+S T++++I G + + EM GF
Sbjct: 563 KMK-EDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGF 604
Score = 109 bits (273), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 167/358 (46%), Gaps = 12/358 (3%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASK--EVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
I+ N +++ A+ F + +K+ ++ +N + K + L + M
Sbjct: 53 ILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTL 112
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
G+ D T+S I+C + + A+ +M G +PD +T SS+++ Y + + A
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172
Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
L D+ ++ D F+TLI + + ++M G +P+++TY +++
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232
Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
+ + ++ K+M + + Y +++ + ++ +D L+++ EM KG++
Sbjct: 233 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPD 292
Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
V Y++L++ + G +A + DM P+ TFS++I GK+ EAE ++
Sbjct: 293 VFTYSSLISCLCNYGRWSDASRLLSDM-IERKINPNVVTFSALIDAFVKEGKLVEAEKLY 351
Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
+EM++ +P++F +SLI + R D+ + EL I+ D C NV+T
Sbjct: 352 DEMIKRSIDPDIFTYSSLINGFCMHDRLDEA----KHMFELMISKD-----CFPNVVT 400
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 111/231 (48%), Gaps = 1/231 (0%)
Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
V+ Y+ +K F K + +++ LF +M RG+ + VT++TLI + A F+
Sbjct: 398 VVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK 457
Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
+M S G P+ LTY+ ++D + G + A +++ + D ++ +I+ AG
Sbjct: 458 QMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAG 517
Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
+ ++ + GV PN+I YN ++ R + ++ K+M ++G PN TY
Sbjct: 518 KVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYN 577
Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
+L+RA R E + + +EM+ G + + M D G D++F
Sbjct: 578 TLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD-GRLDKSF 627
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 2/129 (1%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
I+L+ + A A+ F +++ E + YN+ ++ K ++ LF ++ +
Sbjct: 473 ILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLK 532
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
GV P+ + ++T+IS +A ++M G P++ TY+++I A R G+ E +
Sbjct: 533 GVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREAS 592
Query: 255 FGLYDRARN 263
L R+
Sbjct: 593 AELIKEMRS 601
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 157/318 (49%), Gaps = 7/318 (2%)
Query: 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD 234
+ K + + AER+ + G P+ ++++ L+ N A F RM S G +P
Sbjct: 149 YGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPS 208
Query: 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEK---WRIDPNAFSTLIKLYGTAGNFDGCLN 291
A+TY ++ + + A +++ +EK + D + +I +Y AGN++
Sbjct: 209 AITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARK 268
Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
V+ M GV + +TYN+L+ K +V IY +M + + P+ +YA L++AYG
Sbjct: 269 VFSSMVGKGVPQSTVTYNSLMSFETSYK---EVSKIYDQMQRSDIQPDVVSYALLIKAYG 325
Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
RAR E+ LSV+ EM + G++ + YN LL A G ++A +F+ M+ + PD
Sbjct: 326 RARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRR-DRIFPDL 384
Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
W++++M++ + AE F + GFEPN+ +LI+ Y KA + ++ +
Sbjct: 385 WSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEK 444
Query: 472 LPELGITPDDRFCGCLLN 489
+ GI + +++
Sbjct: 445 MRLSGIKANQTILTTIMD 462
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 145/305 (47%), Gaps = 15/305 (4%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVI-----LYNVTMKVFRKCRDLDKAERLFDDM 191
IIL D A F L K + +Y++ + +++K + +KA ++F M
Sbjct: 214 IILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSM 273
Query: 192 LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV 251
+ +GV VT+++L+S +K +++M PD ++Y+ +I AYGRA
Sbjct: 274 VGKGVPQSTVTYNSLMSFETSYKEVSKI---YDQMQRSDIQPDVVSYALLIKAYGRARRE 330
Query: 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
E A +++ + R A++ L+ + +G + V++ M+ + P++ +Y +
Sbjct: 331 EEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTM 390
Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
L A + +K + +G PN TY +L++ Y +A E + VY +M+ G+
Sbjct: 391 LSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGI 450
Query: 372 QLSVTLYNTLL---AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
+ + T+ T++ C + G A +++M+S PD + ++++ S + ++
Sbjct: 451 KANQTILTTIMDASGRCKNFG---SALGWYKEMESC-GVPPDQKAKNVLLSLASTQDELE 506
Query: 429 EAEAM 433
EA+ +
Sbjct: 507 EAKEL 511
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 152/366 (41%), Gaps = 44/366 (12%)
Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRG---VKPDNVTFSTLISCARMNNLPNKAVEW 222
I Y + +K F + +AE +F+ +LD +KPD + +I + KA +
Sbjct: 210 ITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKV 269
Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
F M G +TY+S++ V +YD+ + + D +++ LIK YG
Sbjct: 270 FSSMVGKGVPQSTVTYNSLMSFETSYKEVS---KIYDQMQRSDIQPDVVSYALLIKAYGR 326
Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
A + L+V+EEM GV+P YN LLD + Q KT++K M + + P+ +
Sbjct: 327 ARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWS 386
Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
Y ++L AY A E ++ +K G + ++ Y TL+ A ++ E++E M+
Sbjct: 387 YTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMR 446
Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
S G + N +LT+++ G+ +
Sbjct: 447 LS------------------------------------GIKANQTILTTIMDASGRCKNF 470
Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLE 522
+ + G+ PD + LL++ + ++EL + E N + ++
Sbjct: 471 GSALGWYKEMESCGVPPDQKAKNVLLSL--ASTQDELEEAKELTGIRNETATIIARVYGS 528
Query: 523 EQDIEG 528
+ D EG
Sbjct: 529 DDDEEG 534
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 115/241 (47%), Gaps = 7/241 (2%)
Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
W F LI YG GNF+G V + +G PN+I+Y L+++ GR + +
Sbjct: 135 WNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAE 194
Query: 326 TIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
I++ M +G P+ TY +L+ + + + E+ + K+ ++ +Y+ ++
Sbjct: 195 AIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMI 254
Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
M G ++A ++F M + + T++S+++ + +VS+ ++++M +
Sbjct: 255 YMYKKAGNYEKARKVFSSM-VGKGVPQSTVTYNSLMSFETSYKEVSK---IYDQMQRSDI 310
Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 502
+P++ LI+ YG+A+R ++ + + + G+ P + LL+ + E K
Sbjct: 311 QPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKT 370
Query: 503 V 503
V
Sbjct: 371 V 371
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/366 (26%), Positives = 171/366 (46%), Gaps = 12/366 (3%)
Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
++YNV + K DL + +L D+M +G P+ VT++TLI + +KAV ER
Sbjct: 258 VIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLER 317
Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
M S C P+ +TY ++I+ + A L + ++ + +S LI G
Sbjct: 318 MVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGK 377
Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
+ ++++ +M G KPN++ Y+ L+D + R +P + K I M +G PN TY+S
Sbjct: 378 AEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSS 437
Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
L++ + + E+ + V++EM + G + Y+ L+ VG EA ++ M +
Sbjct: 438 LMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTI- 496
Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEML---EAGFEPNLFVLTSLIQCYGKAQRT 462
+PD+ +SS+I G + A +++EML E +P++ L+ +
Sbjct: 497 GIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDI 556
Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLE 522
V LN + + G PD C LN +++ +K S L +V LL+
Sbjct: 557 SRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNS--------CDKGRSFLEELVVRLLK 608
Query: 523 EQDIEG 528
Q + G
Sbjct: 609 RQRVSG 614
Score = 115 bits (289), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 75/344 (21%), Positives = 158/344 (45%), Gaps = 6/344 (1%)
Query: 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRK----CRDLDKAERLFDDMLDRGVKPDN 200
PD A ++ + + V +N + V R L+ + + + ++ + P+
Sbjct: 128 PDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNG 187
Query: 201 VTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDR 260
++F+ +I ++A+E F MP C PD TY +++D + ++ A L D
Sbjct: 188 LSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDE 247
Query: 261 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320
++E P ++ LI G+ + + M G PN +TYN L+ + +
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGK 307
Query: 321 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 380
+ ++ + M + PN TY +L+ + R D + + M+E+G L+ +Y+
Sbjct: 308 LDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSV 367
Query: 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440
L++ G +EA ++ M + + C+P+ +S ++ GK +EA+ + N M+ +
Sbjct: 368 LISGLFKEGKAEEAMSLWRKM-AEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIAS 426
Query: 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
G PN + +SL++ + K ++ V+ + + G + ++FC
Sbjct: 427 GCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCS-RNKFC 469
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 177/363 (48%), Gaps = 4/363 (1%)
Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
ALA+ KL ++ N + F + +A L D M++ G +PD VTF+TL+
Sbjct: 119 ALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVH 178
Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
+N ++AV ERM GC PD +TY ++I+ + G ++A L ++ K
Sbjct: 179 GLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEA 238
Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
D +ST+I + D LN++ EM G++P++ TY++L+ + R +
Sbjct: 239 DVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLL 298
Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
+M + ++PN T+ SL+ A+ + + ++ EM ++ + ++ YN+L+
Sbjct: 299 SDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 358
Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
DEA +IF M S++C PD T++++I C + KV + +F +M G N
Sbjct: 359 DRLDEAQQIFTLM-VSKDCLPDVVTYNTLINGFCKAK-KVVDGMELFRDMSRRGLVGNTV 416
Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV-ECV 506
T+LI + +A D+ ++ G+ P+ LL+ + + K E +V E +
Sbjct: 417 TYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 476
Query: 507 EKS 509
+KS
Sbjct: 477 QKS 479
Score = 129 bits (324), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 167/338 (49%), Gaps = 6/338 (1%)
Query: 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFS 204
PD A L L K K +V++Y+ + K R +D A LF +M ++G++PD T+S
Sbjct: 221 PDLA-LNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYS 279
Query: 205 TLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
+LISC + A M +P+ +T++S+IDA+ + G + A L+D
Sbjct: 280 SLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR 339
Query: 265 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
IDPN +++LI + D ++ M + P+++TYN L++ +AK+
Sbjct: 340 S--IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVV 397
Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
++++M+ GL N TY +L+ + +A ++ V+++M G+ ++ YNTLL
Sbjct: 398 DGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLL 457
Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
G ++A +FE ++ S+ +PD +T++ M GKV + +F + G
Sbjct: 458 DGLCKNGKLEKAMVVFEYLQKSK-MEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGV 516
Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
+P++ ++I + K ++ ++ E G PD
Sbjct: 517 KPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPD 554
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 146/283 (51%), Gaps = 1/283 (0%)
Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
K + V+ +N + F K L +AE+LFD+M+ R + P+ VT+++LI+ M++ ++A
Sbjct: 305 KINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEA 364
Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
+ F M S C PD +TY+++I+ + +A V L+ + ++TLI
Sbjct: 365 QQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHG 424
Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
+ A + D V+++M + GV PN++TYN LLD + + + + +++ + + + P+
Sbjct: 425 FFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPD 484
Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
TY + +A ED ++ + KG++ V YNT+++ G +EA+ +F
Sbjct: 485 IYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFI 544
Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
MK + PDS T++++I G + + + EM F
Sbjct: 545 KMK-EDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRF 586
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 141/301 (46%), Gaps = 3/301 (0%)
Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
LD+A LF +M+ P V FS L+S A+M + + + E+M G + TY+
Sbjct: 46 LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKF-DLVISFGEKMEILGVSHNLYTYN 104
Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
MI+ R + A + + + ++L+ + + + ++M +
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164
Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
G +P+ +T+ L+ + + + + + + M G P+ TY +++ + +
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 224
Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
L++ +M++ ++ V +Y+T++ + D+A +F +M ++ +PD +T+SS+I+
Sbjct: 225 LNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM-DNKGIRPDVFTYSSLIS 283
Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
G+ S+A + ++MLE PN+ SLI + K + + + + + + I P
Sbjct: 284 CLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 343
Query: 480 D 480
+
Sbjct: 344 N 344
Score = 85.9 bits (211), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 113/232 (48%), Gaps = 1/232 (0%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+V+ YN + F K + + LF DM RG+ + VT++TLI + + A F
Sbjct: 379 DVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVF 438
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
++M S G P+ +TY++++D + G +E A +++ + K D ++ + + A
Sbjct: 439 KQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKA 498
Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
G + +++ + GVKP++I YN ++ + + T++ +M ++G P+ TY
Sbjct: 499 GKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTY 558
Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
+L+RA+ R + + +EM+ + Y + M D G D+ F
Sbjct: 559 NTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDMLHD-GRLDKGF 609
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%)
Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
A+ + + K K ++ YN+ + K ++ LF + +GVKPD + ++T+IS
Sbjct: 469 AMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMIS 528
Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
L +A F +M G PD+ TY+++I A+ R G+ + L R+ ++
Sbjct: 529 GFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAG 588
Query: 269 DPNAFS 274
D + +
Sbjct: 589 DASTYG 594
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/441 (24%), Positives = 212/441 (48%), Gaps = 7/441 (1%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
I++N +LAL +K E ++ + + + + + A L D M++
Sbjct: 50 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 109
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
G +PD +TF+TLI ++N ++AV +RM GC P+ +TY +++ + G++++A
Sbjct: 110 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 169
Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
F L ++ K D F+T+I + D LN+++EM+ G++PN++TY++L+
Sbjct: 170 FNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 229
Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
+ R + +M + ++PN T+ +L+ A+ + + ++ +M ++ +
Sbjct: 230 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPD 289
Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
+ YN+L+ D+A ++FE M S++C PD T++++I +V + +F
Sbjct: 290 IFTYNSLINGFCMHDRLDKAKQMFEFM-VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELF 348
Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
EM G + T+LIQ D+ + ++ G+ PD LL+ +
Sbjct: 349 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 408
Query: 495 PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYC-- 550
K E+ ++ + ++KS KL + + E + + +LF S+S K VK
Sbjct: 409 GKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTY 468
Query: 551 NCLIDLCVNLNLLENACKLLE 571
N +I + LL+ A LL+
Sbjct: 469 NTMISGLCSKRLLQEAYALLK 489
Score = 122 bits (306), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 171/349 (48%), Gaps = 9/349 (2%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
+++N + LA NK++A+K +V+++N + K R +D A LF +M
Sbjct: 155 VVVNGLCKRGDIDLAFNLL-NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 213
Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
+G++P+ VT+S+LISC + A + M +P+ +T++++IDA+ + G
Sbjct: 214 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 273
Query: 254 AFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
A L+D K IDP+ F+ +LI + D ++E M + P++ TYN L
Sbjct: 274 AEKLHDDMI--KRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 331
Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
+ ++KR +++EM+ GL + TY +L++ ++ V+++M G+
Sbjct: 332 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391
Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
+ Y+ LL + G ++A E+F+ M+ SE + D + +++MI GKV +
Sbjct: 392 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE-IKLDIYIYTTMIEGMCKAGKVDDGW 450
Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
+F + G +PN+ ++I + + L ++ E G PD
Sbjct: 451 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPD 499
Score = 106 bits (265), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 141/283 (49%), Gaps = 1/283 (0%)
Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
K + ++ +N + F K +AE+L DDM+ R + PD T+++LI+ M++ +KA
Sbjct: 250 KINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKA 309
Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
+ FE M S C PD TY+++I + ++ VE L+ + D ++TLI+
Sbjct: 310 KQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 369
Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
G+ D V+++M + GV P+++TY+ LLD + + + ++ M + + +
Sbjct: 370 LFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 429
Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
Y +++ +A +D ++ + KG++ +V YNT+++ EA+ + +
Sbjct: 430 IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLK 489
Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
MK + PDS T++++I G + + + EM F
Sbjct: 490 KMK-EDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRF 531
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 131/286 (45%), Gaps = 7/286 (2%)
Query: 198 PDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256
P F+ L+S A+M + + E+M G + TY+ +I+ + R + +A
Sbjct: 8 PSIFEFNKLLSAIAKMKKF-DLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 66
Query: 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316
L + + S+L+ Y + + ++M +G +P+ IT+ L+ +
Sbjct: 67 LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 126
Query: 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS--VYREMKEKGMQLS 374
+ + + M G PN TY ++ G + G+ L+ + +M+ ++
Sbjct: 127 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVN--GLCKRGDIDLAFNLLNKMEAAKIEAD 184
Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
V ++NT++ + D+A +F++M+ ++ +P+ T+SS+I+ G+ S+A +
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEME-TKGIRPNVVTYSSLISCLCSYGRWSDASQLL 243
Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
++M+E PNL +LI + K + + + + + + I PD
Sbjct: 244 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPD 289
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR--DLDKAERLFDDMLDR 194
I+L+ + N AL F K+ ++ +Y T + C+ +D LF + +
Sbjct: 400 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 459
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
GVKP+ VT++T+IS L +A ++M G PD+ TY+++I A+ R G+
Sbjct: 460 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 515
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 161/327 (49%), Gaps = 12/327 (3%)
Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
YN + + K R D A L D M R V+ TF+ LI L ++AV F RM
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213
Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
+GC PD + +S +I R A +D + +++ D ++ L++ + AG
Sbjct: 214 DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLK-DRFEPDVIVYTNLVRGWCRAGEIS 272
Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
V++EMK G++PN+ TY+ ++D + R + + ++ +M D+G +PN T+ +L+
Sbjct: 273 EAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLM 332
Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSEN 406
R + +A E L VY +MK+ G + YN L+ A C D + A ++ M +
Sbjct: 333 RVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENL-ENAVKVLNTM-IKKK 390
Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
C+ ++ TF+++ + V+ A M+++M+EA EPN L++ + ++ TD V+
Sbjct: 391 CEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVL 450
Query: 467 RALNRLPELGITPD--------DRFCG 485
+ + + + P+ FCG
Sbjct: 451 KMKKEMDDKEVEPNVNTYRLLVTMFCG 477
Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 120/238 (50%), Gaps = 1/238 (0%)
Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
V Y++ + +C + +A +F DMLD G P+ +TF+ L+ K ++ +
Sbjct: 290 VYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYN 349
Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
+M GC+PD +TY+ +I+A+ R N+E A + + +K ++ + F+T+ +
Sbjct: 350 QMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKR 409
Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
+ +G +Y +M +PN +TYN L+ +K V + KEM D + PN NTY
Sbjct: 410 DVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYR 469
Query: 345 SLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
L+ + + + +++EM +EK + S++LY +LA G + E+ E M
Sbjct: 470 LLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKM 527
Score = 103 bits (256), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 155/308 (50%), Gaps = 3/308 (0%)
Query: 137 IILNNMTNPDTAALALTYFTN-KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
I+++N++ A+ A ++F + K + +VI+Y ++ + + ++ +AE++F +M G
Sbjct: 226 IVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAG 285
Query: 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255
++P+ T+S +I ++A + F M GC P+A+T+++++ + +AG E
Sbjct: 286 IEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVL 345
Query: 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
+Y++ + D ++ LI+ + N + + V M + N T+N + +
Sbjct: 346 QVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYI 405
Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
+ + +Y +M + PN TY L+R + ++ + L + +EM +K ++ +V
Sbjct: 406 EKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNV 465
Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMF 434
Y L+ M +G+ + A+++F++M E C S + M+ R G++ + E +
Sbjct: 466 NTYRLLVTMFCGMGHWNNAYKLFKEM-VEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELV 524
Query: 435 NEMLEAGF 442
+M++ G
Sbjct: 525 EKMIQKGL 532
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 184/370 (49%), Gaps = 5/370 (1%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
I++N +LAL +K E ++ + + + + + A L D M++
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
G +PD +TF+TLI ++N ++AV +RM GC P+ +TY +++ + G++++A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244
Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
F L ++ K + +ST+I + D LN++ EM+ GV+PN+ITY++L+
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 304
Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
+ +R + +M + ++PN T+ +L+ A+ + + +Y EM ++ +
Sbjct: 305 LCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 364
Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAM 433
+ Y++L+ DEA +FE M S++C P+ T++++I C + ++ E +
Sbjct: 365 IFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLINGFCKAK-RIDEGVEL 422
Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
F EM + G N T+LI + +A+ D+ ++ G+ P+ LL+ + +
Sbjct: 423 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCK 482
Query: 494 TPKEELGKLV 503
K E +V
Sbjct: 483 NGKLEKAMVV 492
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 168/348 (48%), Gaps = 42/348 (12%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
+++N + LA NK++A+K V++Y+ + K R D A LF +M +
Sbjct: 230 VVVNGLCKRGDIDLAFN-LLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMEN 288
Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
+GV+P+ +T+S+LISC + A M +P+ +T++++IDA+ + G +
Sbjct: 289 KGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVE 348
Query: 254 AFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
A LYD K IDP+ F S+LI + D +++E M + PN++TYN L
Sbjct: 349 AEKLYDEMI--KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 406
Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
++ +AKR + +++EM+ GL N TY +L+ + +AR ++ V+++M G+
Sbjct: 407 INGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGV 466
Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-------------------------- 405
++ YNTLL G ++A +FE ++ S+
Sbjct: 467 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 526
Query: 406 --------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
+PD +++MI+ +G EA+A+F +M E G P+
Sbjct: 527 LFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPD 574
Score = 116 bits (290), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 134/254 (52%), Gaps = 1/254 (0%)
Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
K + V+ +N + F K L +AE+L+D+M+ R + PD T+S+LI+ M++ ++A
Sbjct: 325 KINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 384
Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
FE M S C P+ +TY+++I+ + +A ++ L+ + ++TLI
Sbjct: 385 KHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHG 444
Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
+ A + D V+++M + GV PN++TYN LLD + + + + +++ + + + P
Sbjct: 445 FFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 504
Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
TY ++ +A ED ++ + KG++ V +YNT+++ G +EA +F
Sbjct: 505 IYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFR 564
Query: 400 DMKSSENCQPDSWT 413
M+ + PDS T
Sbjct: 565 KMR-EDGPLPDSGT 577
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 148/348 (42%), Gaps = 47/348 (13%)
Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
LD A LF M+ P F+ L+S A+M + + E+M G + TY+
Sbjct: 66 LDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKF-DLVISLGEKMQRLGISHNLYTYN 124
Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
+I+ + R + +A L + + S+L+ Y + + ++M +
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT----------------- 342
G +P+ IT+ L+ + + + + M G PN T
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244
Query: 343 ------------------YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
Y++++ + + R+ +D L+++ EM+ KG++ +V Y++L++
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 304
Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
+ +A + DM + P+ TF+++I GK+ EAE +++EM++ +P
Sbjct: 305 LCNYERWSDASRLLSDMIERK-INPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDP 363
Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
++F +SLI + R D+ + EL I+ D C NV+T
Sbjct: 364 DIFTYSSLINGFCMHDRLDEA----KHMFELMISKD-----CFPNVVT 402
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%)
Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
A+ + + + K + YN+ ++ K ++ LF + +GVKPD + ++T+IS
Sbjct: 489 AMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMIS 548
Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALT 237
L +A F +M G PD+ T
Sbjct: 549 GFCRKGLKEEADALFRKMREDGPLPDSGT 577
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 107/441 (24%), Positives = 210/441 (47%), Gaps = 7/441 (1%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
I++N +LAL +K E ++ + + + + + A L D M++
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
G +PD +TF+TLI ++N ++AV +RM GC P+ +TY +++ + G+ ++A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244
Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
L ++ K D F+T+I + D LN+++EM+ G++PN++TY++L+
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 304
Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
+ R + +M + ++PN T+ +L+ A+ + + +Y +M ++ +
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPD 364
Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
+ YN+L+ D+A ++FE M S++C PD T++++I +V + +F
Sbjct: 365 IFTYNSLVNGFCMHDRLDKAKQMFEFM-VSKDCFPDVVTYNTLIKGFCKSKRVEDGTELF 423
Query: 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494
EM G + T+LIQ D+ + ++ G+ PD LL+ +
Sbjct: 424 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 483
Query: 495 PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYC-- 550
K E+ ++ + ++KS KL + + E + + +LF S+S K VK
Sbjct: 484 GKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTY 543
Query: 551 NCLIDLCVNLNLLENACKLLE 571
N +I + LL+ A LL+
Sbjct: 544 NTMISGLCSKRLLQEAYALLK 564
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 173/349 (49%), Gaps = 9/349 (2%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
+++N + LAL NK++A+K +V+++N + K R +D A LF +M
Sbjct: 230 VVVNGLCKRGDTDLALNLL-NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
+G++P+ VT+S+LISC + A + M +P+ +T++++IDA+ + G
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348
Query: 254 AFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
A LYD K IDP+ F+ +L+ + D ++E M + P+++TYN L
Sbjct: 349 AEKLYDDMI--KRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406
Query: 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 371
+ ++KR +++EM+ GL + TY +L++ ++ V+++M G+
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466
Query: 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431
+ Y+ LL + G ++A E+F+ M+ SE + D + +++MI GKV +
Sbjct: 467 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE-IKLDIYIYTTMIEGMCKAGKVDDGW 525
Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
+F + G +PN+ ++I + + L ++ E G P+
Sbjct: 526 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPN 574
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 143/283 (50%), Gaps = 1/283 (0%)
Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
K + ++ +N + F K +AE+L+DDM+ R + PD T+++L++ M++ +KA
Sbjct: 325 KINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKA 384
Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
+ FE M S C PD +TY+++I + ++ VE L+ + D ++TLI+
Sbjct: 385 KQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 444
Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
G+ D V+++M + GV P+++TY+ LLD + + + ++ M + + +
Sbjct: 445 LFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 504
Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
Y +++ +A +D ++ + KG++ +V YNT+++ EA+ + +
Sbjct: 505 IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLK 564
Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
MK + P+S T++++I G + + + EM F
Sbjct: 565 KMK-EDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRF 606
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 135/301 (44%), Gaps = 3/301 (0%)
Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
LD A LF M+ P V F+ L+S A+M + + E+M TY+
Sbjct: 66 LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKF-DVVISLGEKMQRLEIVHGLYTYN 124
Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
+I+ + R + +A L + + S+L+ Y + + ++M +
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
G +P+ IT+ L+ + + + + M G PN TY ++ + +
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244
Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
L++ +M+ ++ V ++NT++ + D+A +F++M+ ++ +P+ T+SS+I+
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME-TKGIRPNVVTYSSLIS 303
Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
G+ S+A + ++M+E PNL +LI + K + + + + + + I P
Sbjct: 304 CLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDP 363
Query: 480 D 480
D
Sbjct: 364 D 364
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCR--DLDKAERLFDDMLDR 194
I+L+ + N AL F K+ ++ +Y T + C+ +D LF + +
Sbjct: 475 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 534
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
GVKP+ VT++T+IS L +A ++M G P++ TY+++I A+ R G+
Sbjct: 535 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 590
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 172/350 (49%), Gaps = 3/350 (0%)
Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
K A+ + YN+ + + + LD A L D M G+ P+ T + ++ + +
Sbjct: 370 KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLD 429
Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
+A FE M C PD +T+ S+ID G+ G V+ A+ +Y++ + R + +++LI
Sbjct: 430 EACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLI 489
Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
K + G + +Y++M P++ N +D M +A P + + +++E+
Sbjct: 490 KNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFV 549
Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
P+ +Y+ L+ +A + +T ++ MKE+G L YN ++ G ++A+++
Sbjct: 550 PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQL 609
Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
E+MK ++ +P T+ S+I + ++ EA +F E E N+ + +SLI +G
Sbjct: 610 LEEMK-TKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFG 668
Query: 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 507
K R D+ L L + G+TP+ LL+ + + EE+ + + C +
Sbjct: 669 KVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKA--EEINEALVCFQ 716
Score = 119 bits (298), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 92/398 (23%), Positives = 178/398 (44%), Gaps = 22/398 (5%)
Query: 89 KLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVL-RCLGDDFLEQDCVIILNNMTNPDT 147
+LK+ + Y + +L C + + + V+ RC D L+Q IL M+
Sbjct: 74 RLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQ----ILGEMS---- 125
Query: 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
+ F + E++L V R+ D+ + R F +P ++TLI
Sbjct: 126 ----VAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFK------FRPAFSAYTTLI 175
Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
N + + F++M G +P ++++I + + G V+ A L D ++
Sbjct: 176 GAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLD 235
Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
D ++ I +G G D + E++A G+KP+ +TY +++ + +A R + +
Sbjct: 236 ADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEM 295
Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
++ + N P Y +++ YG A ++ S+ + KG SV YN +L
Sbjct: 296 FEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRK 355
Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
+G DEA ++FE+MK ++ P+ T++ +I + GK+ A + + M +AG PN+
Sbjct: 356 MGKVDEALKVFEEMK--KDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVR 413
Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFC 484
+ ++ K+Q+ D+ + TPD+ FC
Sbjct: 414 TVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFC 451
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/357 (22%), Positives = 159/357 (44%), Gaps = 1/357 (0%)
Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221
S ++ L N M K + +K +F+++ R PD ++S LI N+ E
Sbjct: 514 SPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYE 573
Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
F M GC D Y+ +ID + + G V A+ L + + + + + ++I
Sbjct: 574 LFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLA 633
Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
D ++EE K+ ++ N++ Y++L+D G+ R + I +E+ GL+PN
Sbjct: 634 KIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLY 693
Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
T+ SLL A +A + L ++ MKE + Y L+ V ++AF +++M
Sbjct: 694 TWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEM 753
Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
+ + +P + ++++MI+ + G ++EA A+F+ G P+ ++I+ R
Sbjct: 754 Q-KQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNR 812
Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVK 518
D G+ ++ C LL+ + + E +V V + K + +
Sbjct: 813 AMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRETGKARHAAR 869
Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 145/316 (45%), Gaps = 3/316 (0%)
Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
I+Y +K F + +++ DM+++ PD +T + C P K FE
Sbjct: 483 IVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEE 542
Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
+ + PDA +YS +I +AG + L+ + + +D A++ +I + G
Sbjct: 543 IKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGK 602
Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
+ + EEMK G +P ++TY +++D + + R + +++E + N Y+S
Sbjct: 603 VNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSS 662
Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
L+ +G+ ++ + E+ +KG+ ++ +N+LL +EA F+ MK +
Sbjct: 663 LIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELK 722
Query: 406 NCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
C P+ T+ +I +C R K ++A + EM + G +P+ T++I KA +
Sbjct: 723 -CTPNQVTYGILINGLCKVR-KFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAE 780
Query: 465 VVRALNRLPELGITPD 480
+R G PD
Sbjct: 781 AGALFDRFKANGGVPD 796
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Query: 138 ILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG 195
+L+ + + AL F + +LK + + Y + + K R +KA + +M +G
Sbjct: 698 LLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQG 757
Query: 196 VKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
+KP ++++T+IS A+ N+ +A F+R + G PD+ Y++MI+ A
Sbjct: 758 MKPSTISYTTMISGLAKAGNIA-EAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDA 816
Query: 255 FGLYDRAR 262
F L++ R
Sbjct: 817 FSLFEETR 824
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 136 bits (343), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 181/372 (48%), Gaps = 9/372 (2%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
I++N +LAL +K E ++ N + F + A L M++
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
G +PD+ TF+TLI +N ++AV +RM GC PD +TY +++ + G++++A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240
Query: 255 FGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
L + E+ +I+P ++T+I N + LN++ EM G++PN++TYN+L+
Sbjct: 241 LSLLKKM--EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 298
Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
+ R + +M + ++PN T+++L+ A+ + + +Y EM ++ +
Sbjct: 299 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 358
Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAE 431
+ Y++L+ DEA +FE M S++C P+ T++++I C + +V E
Sbjct: 359 PDIFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLIKGFCKAK-RVDEGM 416
Query: 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
+F EM + G N T+LI + +A+ D+ ++ G+ PD LL+ +
Sbjct: 417 ELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGL 476
Query: 492 TQTPKEELGKLV 503
K E +V
Sbjct: 477 CNNGKVETALVV 488
Score = 133 bits (334), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 173/348 (49%), Gaps = 7/348 (2%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
I++N + LAL+ + E V++YN + ++++ A LF +M ++
Sbjct: 226 IVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNK 285
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
G++P+ VT+++LI C + A M +P+ +T+S++IDA+ + G + A
Sbjct: 286 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 345
Query: 255 FGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
LYD K IDP+ F S+LI + D +++E M + PN++TYN L+
Sbjct: 346 EKLYDEM--IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 403
Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
+AKR + +++EM+ GL N TY +L+ + +AR ++ V+++M G+
Sbjct: 404 KGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVL 463
Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
+ Y+ LL + G + A +FE ++ S+ +PD +T++ MI GKV +
Sbjct: 464 PDIMTYSILLDGLCNNGKVETALVVFEYLQRSK-MEPDIYTYNIMIEGMCKAGKVEDGWD 522
Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
+F + G +PN+ T+++ + + ++ + E G PD
Sbjct: 523 LFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPD 570
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 152/323 (47%), Gaps = 7/323 (2%)
Query: 159 LKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218
L S + Y++ + F + L A + M+ G +PD VT ++L++ N +
Sbjct: 110 LGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISD 169
Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
AV +M G PD+ T++++I R A L DR + + D + ++
Sbjct: 170 AVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVN 229
Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
G+ D L++ ++M+ ++P ++ YN ++D + K ++ EM + G+ P
Sbjct: 230 GLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRP 289
Query: 339 NWNTYASLLRA---YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
N TY SL+R YGR D + +M E+ + +V ++ L+ G EA
Sbjct: 290 NVVTYNSLIRCLCNYGRW---SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 346
Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
+++++M + PD +T+SS+I ++ EA+ MF M+ PN+ +LI+
Sbjct: 347 KLYDEM-IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG 405
Query: 456 YGKAQRTDDVVRALNRLPELGIT 478
+ KA+R D+ + + + G+
Sbjct: 406 FCKAKRVDEGMELFREMSQRGLV 428
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 159/344 (46%), Gaps = 12/344 (3%)
Query: 151 ALTYFTNKLKASK--EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
A+ F + +K+ ++ ++ + K D L + M + G+ + T+S LI+
Sbjct: 65 AVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILIN 124
Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
C + + A+ +M G +PD +T +S+++ + + A L + ++
Sbjct: 125 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQP 184
Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
D F+TLI + + + M G +P+++TY +++ + + ++
Sbjct: 185 DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLL 244
Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
K+M + P Y +++ A + D L+++ EM KG++ +V YN+L+ +
Sbjct: 245 KKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNY 304
Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
G +A + DM + P+ TFS++I GK+ EAE +++EM++ +P++F
Sbjct: 305 GRWSDASRLLSDMIERK-INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 363
Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
+SLI + R D+ + EL I+ D C NV+T
Sbjct: 364 YSSLINGFCMHDRLDEA----KHMFELMISKD-----CFPNVVT 398
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 130/282 (46%), Gaps = 41/282 (14%)
Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
K + V+ ++ + F K L +AE+L+D+M+ R + PD T+S+LI+ M++ ++A
Sbjct: 321 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 380
Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
FE M S C P+ +TY+++I + +A V+ L+ + ++TLI
Sbjct: 381 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHG 440
Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM------------------------ 315
+ A D V+++M + GV P+++TY+ LLD +
Sbjct: 441 FFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPD 500
Query: 316 --------------GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
G+ + W ++ ++ G+ PN TY +++ + R E+ +
Sbjct: 501 IYTYNIMIEGMCKAGKVEDGWD---LFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADA 557
Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
++REMKE+G YNTL+ G + E+ +M+S
Sbjct: 558 LFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 599
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 137 IILNNMTNPDTAALALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
I+L+ + N AL F + K ++ YN+ ++ K ++ LF + +
Sbjct: 471 ILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 530
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250
GVKP+ VT++T++S L +A F M G PD+ TY+++I A+ R G+
Sbjct: 531 GVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGD 586
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 153/341 (44%), Gaps = 37/341 (10%)
Query: 177 KCRDLDKAERLFDDML-DRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
K ++ A LF+ D GV+P T++ LI ++ A + F ++ S GC PD
Sbjct: 761 KHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDV 820
Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
TY+ ++DAYG++G ++ F LY + + + +I AGN D L++Y +
Sbjct: 821 ATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYD 880
Query: 296 -MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354
M P TY L+D + ++ R ++ K +++ M D G PN Y L+ +G+A
Sbjct: 881 LMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAG 940
Query: 355 YGE-----------------------------------DTLSVYREMKEKGMQLSVTLYN 379
+ + L ++E+KE G+ V YN
Sbjct: 941 EADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYN 1000
Query: 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439
++ +EA +F +MK+S PD +T++S+I G V EA ++NE+
Sbjct: 1001 LIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQR 1060
Query: 440 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
AG EPN+F +LI+ Y + + + + G +P+
Sbjct: 1061 AGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPN 1101
Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 154/347 (44%), Gaps = 36/347 (10%)
Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
Y+ M K RD+D L +M G+KP+ TF+ I N+A E +RM
Sbjct: 226 YSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMD 285
Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID------------------ 269
GC PD +TY+ +IDA A ++ A ++++ + + + D
Sbjct: 286 DEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLD 345
Query: 270 ---------------PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
P+ F+ L+ AGNF + + M+ G+ PN+ TYN L+
Sbjct: 346 SVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLI 405
Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
+ R R ++ M G+ P TY + YG++ L + +MK KG+
Sbjct: 406 CGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIA 465
Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
++ N L A G EA +IF +K PDS T++ M+ S G++ EA
Sbjct: 466 PNIVACNASLYSLAKAGRDREAKQIFYGLKDI-GLVPDSVTYNMMMKCYSKVGEIDEAIK 524
Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
+ +EM+E G EP++ V+ SLI KA R D+ + R+ E+ + P
Sbjct: 525 LLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 571
Score = 132 bits (332), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 158/352 (44%), Gaps = 36/352 (10%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+V+ Y V + R LD A+ +F+ M KPD VT+ TL+ N + +++
Sbjct: 292 DVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFW 351
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN-------------------- 263
M G PD +T++ ++DA +AGN AF D R+
Sbjct: 352 SEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRV 411
Query: 264 -------------EKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
E + P A++ I YG +G+ L +E+MK G+ PN++
Sbjct: 412 HRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVAC 471
Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
N L ++ +A R + K I+ + D GL P+ TY +++ Y + ++ + + EM E
Sbjct: 472 NASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMME 531
Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
G + V + N+L+ DEA+++F MK + +P T+++++ GK+
Sbjct: 532 NGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMK-LKPTVVTYNTLLAGLGKNGKIQ 590
Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
EA +F M++ G PN +L C K ++ L ++ ++G PD
Sbjct: 591 EAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPD 642
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 145/316 (45%), Gaps = 7/316 (2%)
Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
YN + + K R +A ++ M+ G +P T+S+L+ + + + M
Sbjct: 191 YNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEME 250
Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
+ G P+ T++ I GRAG + A+ + R +E D ++ LI TA D
Sbjct: 251 TLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLD 310
Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
V+E+MK KP+ +TY LLD + VK + EM +G P+ T+ L+
Sbjct: 311 CAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILV 370
Query: 348 RAYGRA-RYGE--DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
A +A +GE DTL V M+++G+ ++ YNTL+ V D+A E+F +M+S
Sbjct: 371 DALCKAGNFGEAFDTLDV---MRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESL 427
Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
+P ++T+ I G A F +M G PN+ + + KA R +
Sbjct: 428 -GVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDRE 486
Query: 465 VVRALNRLPELGITPD 480
+ L ++G+ PD
Sbjct: 487 AKQIFYGLKDIGLVPD 502
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 136/311 (43%), Gaps = 1/311 (0%)
Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
N ++ R L++ +FD M R +K D T+ T+ + +A +M
Sbjct: 122 NYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMRE 181
Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
FG +A +Y+ +I ++ A +Y R E +R +S+L+ G + D
Sbjct: 182 FGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDS 241
Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
+ + +EM+ +G+KPN+ T+ + +GRA + + I K M D G P+ TY L+
Sbjct: 242 VMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLID 301
Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
A AR + V+ +MK + Y TLL +D D + + +M+ +
Sbjct: 302 ALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHV- 360
Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
PD TF+ ++ G EA + M + G PNL +LI + R DD +
Sbjct: 361 PDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEL 420
Query: 469 LNRLPELGITP 479
+ LG+ P
Sbjct: 421 FGNMESLGVKP 431
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/374 (22%), Positives = 161/374 (43%), Gaps = 41/374 (10%)
Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
I +N K ++ A ++ M+D G PD T++T+I N +A+ +F +
Sbjct: 609 ITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQ 668
Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY--------DRARNEKWR---------- 267
M PD +T +++ +A +E A+ + D+ N W
Sbjct: 669 MKKL-VYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEA 727
Query: 268 -IDPNAFS-------------------TLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMI 306
ID NA S +I+ N G ++E+ K +GV+P +
Sbjct: 728 GID-NAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLP 786
Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
TYN L+ + A + ++ ++ G P+ TY LL AYG++ ++ +Y+EM
Sbjct: 787 TYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEM 846
Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
+ + +N +++ G D+A +++ D+ S + P + T+ +I S G+
Sbjct: 847 STHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR 906
Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
+ EA+ +F ML+ G PN + LI +GKA D R+ + G+ PD +
Sbjct: 907 LYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSV 966
Query: 487 LLNVMTQTPKEELG 500
L++ + + + G
Sbjct: 967 LVDCLCMVGRVDEG 980
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 3/182 (1%)
Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
+YN+ + F K + D A LF M+ GV+PD T+S L+ C M ++ + +F+ +
Sbjct: 928 IYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKEL 987
Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAG 284
G +PD + Y+ +I+ G++ +E A L++ + + I P+ +++LI G AG
Sbjct: 988 KESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRG-ITPDLYTYNSLILNLGIAG 1046
Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
+ +Y E++ G++PN+ T+N L+ + +P +Y+ M G SPN TY
Sbjct: 1047 MVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYE 1106
Query: 345 SL 346
L
Sbjct: 1107 QL 1108
Score = 92.8 bits (229), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 37/253 (14%)
Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDML-DRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
I +N+ + K ++D A L+ D++ DR P T+ LI + +A + FE
Sbjct: 856 ITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFE 915
Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
M +GC P+ Y+ +I+ +G+AG + A L+ R E R D +S L+ G
Sbjct: 916 GMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVG 975
Query: 285 NFDGCLNVYEEMK------------------------------------AIGVKPNMITY 308
D L+ ++E+K + G+ P++ TY
Sbjct: 976 RVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTY 1035
Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
N+L+ +G A + IY E+ GL PN T+ +L+R Y + E +VY+ M
Sbjct: 1036 NSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVT 1095
Query: 369 KGMQLSVTLYNTL 381
G + Y L
Sbjct: 1096 GGFSPNTGTYEQL 1108
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 129/292 (44%), Gaps = 8/292 (2%)
Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
T + ++ R++ + F+ M D TY ++ + G ++ A +
Sbjct: 120 TCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKM 179
Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
R + ++ +++ LI L + + VY M G +P++ TY++L+ +G+ +
Sbjct: 180 REFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDI 239
Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
V + KEM GL PN T+ +R GRA + + + M ++G V Y L
Sbjct: 240 DSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVL 299
Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
+ D A E+FE MK+ + +PD T+ +++ S + + ++EM + G
Sbjct: 300 IDALCTARKLDCAKEVFEKMKTGRH-KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDG 358
Query: 442 FEPNLFVLTSLIQC------YGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
P++ T L+ +G+A T DV+R LP L T + CG L
Sbjct: 359 HVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLH-TYNTLICGLL 409
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/357 (19%), Positives = 148/357 (41%), Gaps = 38/357 (10%)
Query: 146 DTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST 205
D A + Y + + + YN+ MK + K ++D+A +L +M++ G +PD + ++
Sbjct: 484 DREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNS 543
Query: 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265
LI+ + ++A + F RM P +TY++++ G+ G ++ A L++ +
Sbjct: 544 LINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG 603
Query: 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
+ F+TL L + +M +G P++ TYN ++ + + + +
Sbjct: 604 CPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAM 663
Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE-------------------- 365
+ +M + P++ T +LL +A ED +
Sbjct: 664 CFFHQMK-KLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGS 722
Query: 366 -MKEKGMQLSVTLYNTLLA--MCAD--------VGYT------DEAFEIFEDMKSSENCQ 408
+ E G+ +V+ L+A +C D + Y+ A +FE Q
Sbjct: 723 ILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQ 782
Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
P T++ +I + A+ +F ++ G P++ L+ YGK+ + D++
Sbjct: 783 PKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDEL 839
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 7/180 (3%)
Query: 137 IILNNMTNPDTAALALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
I++N A A F +K ++ Y+V + +D+ F ++ +
Sbjct: 931 ILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKES 990
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMP-SFGCDPDALTYSSMIDAYGRAGNVEM 253
G+ PD V ++ +I+ ++ +A+ F M S G PD TY+S+I G AG VE
Sbjct: 991 GLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEE 1050
Query: 254 AFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 311
A +Y+ ++ ++PN F+ LI+ Y +G + VY+ M G PN TY L
Sbjct: 1051 AGKIYNEI--QRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 165/324 (50%), Gaps = 3/324 (0%)
Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
KL +++ N + F + A L D M++ G KPD VTF+TLI ++N +
Sbjct: 141 KLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKAS 200
Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
+AV +RM GC PD +TY ++++ + G+ ++A L ++ K + +ST+I
Sbjct: 201 EAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVI 260
Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
+ D LN++ EM+ GV+PN+ITY++L+ + R + +M + ++
Sbjct: 261 DSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKIN 320
Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
PN T+++L+ A+ + +Y EM ++ + ++ Y++L+ + EA ++
Sbjct: 321 PNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQM 380
Query: 398 FEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
E M ++C P+ T++++I C + +V + +F EM + G N T+LI +
Sbjct: 381 LELM-IRKDCLPNVVTYNTLINGFCKAK-RVDKGMELFREMSQRGLVGNTVTYTTLIHGF 438
Query: 457 GKAQRTDDVVRALNRLPELGITPD 480
+A+ D+ ++ +G+ P+
Sbjct: 439 FQARDCDNAQMVFKQMVSVGVHPN 462
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 147/326 (45%), Gaps = 13/326 (3%)
Query: 142 MTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNV 201
+ N + A+AL + +++ Y + K D D A L + M ++ + V
Sbjct: 195 LHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVV 254
Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA---YGRAGNVEMAFG-L 257
+ST+I + A+ F M + G P+ +TYSS+I YGR + +
Sbjct: 255 IYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDM 314
Query: 258 YDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
+R +I+PN FS LI + G +YEEM + PN+ TY++L++
Sbjct: 315 IER------KINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGF 368
Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
R + K + + M PN TY +L+ + +A+ + + ++REM ++G+ +
Sbjct: 369 CMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNT 428
Query: 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
Y TL+ D A +F+ M S P+ T++ ++ GK+++A +F
Sbjct: 429 VTYTTLIHGFFQARDCDNAQMVFKQM-VSVGVHPNILTYNILLDGLCKNGKLAKAMVVFE 487
Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQR 461
+ + EP+++ +I+ KA +
Sbjct: 488 YLQRSTMEPDIYTYNIMIEGMCKAGK 513
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 151/349 (43%), Gaps = 47/349 (13%)
Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTY 238
+LD A LF M P + FS L+S A+MN + + + E+M G + TY
Sbjct: 58 ELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKF-DLVISFGEKMEILGISHNLYTY 116
Query: 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298
+ +I+ + R + +A L + + D ++L+ + + + ++M
Sbjct: 117 NILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVE 176
Query: 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA----- 353
+G KP+ +T+ L+ + + + + M G P+ TY +++ +
Sbjct: 177 MGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDL 236
Query: 354 ------------------------------RYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
R+ +D L+++ EM+ KG++ +V Y++L++
Sbjct: 237 ALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLIS 296
Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
+ G +A + DM + P+ TFS++I +GK+ +AE ++ EM++ +
Sbjct: 297 CLCNYGRWSDASRLLSDMIERK-INPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSID 355
Query: 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
PN+F +SLI + R + + L EL I D CL NV+T
Sbjct: 356 PNIFTYSSLINGFCMLDRLGEAKQML----ELMIRKD-----CLPNVVT 395
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
+ Y + F + RD D A+ +F M+ GV P+ +T++ L+ N KA+ FE
Sbjct: 429 VTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEY 488
Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLY 258
+ +PD TY+ MI+ +AG +M G+Y
Sbjct: 489 LQRSTMEPDIYTYNIMIEGMCKAGKWKMG-GIY 520
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 133 bits (335), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 161/321 (50%), Gaps = 5/321 (1%)
Query: 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI--SCARMNNLPNKA 219
S V YN + K ++A+ +F +ML G+ PD+ T+ +L+ +C + + + +
Sbjct: 302 SPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEK 361
Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
V F M S PD + +SSM+ + R+GN++ A ++ + D ++ LI+
Sbjct: 362 V--FSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQG 419
Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
Y G +N+ EM G +++TYN +L + + K + ++ EMT+ L P+
Sbjct: 420 YCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPD 479
Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
T L+ + + ++ + ++++MKEK ++L V YNTLL VG D A EI+
Sbjct: 480 SYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWA 539
Query: 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
DM S E P ++S ++ +G ++EA +++EM+ +P + + S+I+ Y ++
Sbjct: 540 DMVSKE-ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRS 598
Query: 460 QRTDDVVRALNRLPELGITPD 480
D L ++ G PD
Sbjct: 599 GNASDGESFLEKMISEGFVPD 619
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 161/337 (47%), Gaps = 5/337 (1%)
Query: 151 ALTYFTNKLKASKEV---ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
AL YF N +K + + ++Y + ++ + + + A L ++ML +G D VT++T++
Sbjct: 394 ALMYF-NSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTIL 452
Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
+ +A + F M PD+ T + +ID + + GN++ A L+ + + ++ R
Sbjct: 453 HGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIR 512
Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
+D ++TL+ +G G+ D ++ +M + + P I+Y+ L++ + + +
Sbjct: 513 LDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRV 572
Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
+ EM + P S+++ Y R+ D S +M +G YNTL+
Sbjct: 573 WDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVR 632
Query: 388 VGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
+AF + + M+ + PD +T++S++ + ++ EAE + +M+E G P+
Sbjct: 633 EENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDR 692
Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483
T +I + + R + + + G +PDD+F
Sbjct: 693 STYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDKF 729
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 93/430 (21%), Positives = 185/430 (43%), Gaps = 50/430 (11%)
Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
C + + +I Y +A + A + R++ + + +A + LI G +
Sbjct: 161 CGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAW 220
Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
VY+E+ GV N+ T N +++ + + + +V T ++ + G+ P+ TY +L+ AY
Sbjct: 221 GVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAY 280
Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
E+ + M KG V YNT++ G + A E+F +M S PD
Sbjct: 281 SSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS-GLSPD 339
Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
S T+ S++ +G V E E +F++M P+L +S++ + ++ D + N
Sbjct: 340 STTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFN 399
Query: 471 RLPELGITPDD--------RFC------------------GCLLNVMTQT-------PKE 497
+ E G+ PD+ +C GC ++V+T ++
Sbjct: 400 SVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRK 459
Query: 498 ELGK----LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCL 553
LG+ E E++ Y + +L++ G+ + A ELF + + +
Sbjct: 460 MLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQN-AMELFQKMKEKRIR------ 512
Query: 554 IDLCVNLNLLENACKLLELGLTLEVYTDIQSR----SPTQWSLHLKSL-SLGAALTALHI 608
+D+ LL+ K+ ++ E++ D+ S+ +P +S+ + +L S G A +
Sbjct: 513 LDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRV 572
Query: 609 WINDLSKALE 618
W +SK ++
Sbjct: 573 WDEMISKNIK 582
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 132 bits (332), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 102/369 (27%), Positives = 171/369 (46%), Gaps = 13/369 (3%)
Query: 119 VFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKC 178
+F ++ LG L C I+++ + A + +K E L T + C
Sbjct: 105 LFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYC 164
Query: 179 R--DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
++ A LFD +L G KP+ VT++TLI C N N AVE F +M + G P+ +
Sbjct: 165 HWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVV 224
Query: 237 TYSSMIDA---YGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLN 291
TY++++ GR G+ A+ L D K RI+PN F+ LI + G
Sbjct: 225 TYNALVTGLCEIGRWGDA--AWLLRDMM---KRRIEPNVITFTALIDAFVKVGKLMEAKE 279
Query: 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351
+Y M + V P++ TY +L++ + + + ++ M NG PN Y +L+ +
Sbjct: 280 LYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFC 339
Query: 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411
+++ ED + ++ EM +KG+ + Y L+ VG D A E+F M SS PD
Sbjct: 340 KSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQM-SSRRAPPDI 398
Query: 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471
T++ ++ C GKV +A +F M + + N+ T +IQ K + +D
Sbjct: 399 RTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCS 458
Query: 472 LPELGITPD 480
L G+ P+
Sbjct: 459 LFSKGMKPN 467
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/400 (22%), Positives = 179/400 (44%), Gaps = 5/400 (1%)
Query: 151 ALTYFTNKLKASK--EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
AL FT + + +I + + V K D LF+ M G+ P T + ++
Sbjct: 67 ALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMH 126
Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
C +++ P +A + +M G +PD +T++S+++ Y +E A L+D+ ++
Sbjct: 127 CVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKP 186
Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
+ ++TLI+ + + + ++ +M G +PN++TYN L+ + R +
Sbjct: 187 NVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLL 246
Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
++M + PN T+ +L+ A+ + + +Y M + + V Y +L+
Sbjct: 247 RDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMY 306
Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
G DEA ++F M+ + C P+ ++++I +V + +F EM + G N
Sbjct: 307 GLLDEARQMFYLMERN-GCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTIT 365
Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV-ECVE 507
T LIQ Y R D N++ PD R LL+ + K E ++ E +
Sbjct: 366 YTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMR 425
Query: 508 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVK 546
K + V ++ + + ++A +LF S+ SK +K
Sbjct: 426 KREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMK 465
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 131/288 (45%), Gaps = 36/288 (12%)
Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
K + VI + + F K L +A+ L++ M+ V PD T+ +LI+ M L +
Sbjct: 251 KRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLD 310
Query: 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
+A + F M GC P+ + Y+++I + ++ VE ++ + + ++ LI
Sbjct: 311 EARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLI 370
Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
+ Y G D V+ +M + P++ TYN LLD GL
Sbjct: 371 QGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLD---------------------GLC 409
Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
N E L ++ M+++ M +++ Y ++ +G ++AF++
Sbjct: 410 CNGKV--------------EKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDL 455
Query: 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
F + S+ +P+ T+++MI+ RG + EA+++F +M E GF PN
Sbjct: 456 FCSL-FSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPN 502
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 90/178 (50%)
Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
++Y + F K + ++ ++F +M +GV + +T++ LI + P+ A E F +
Sbjct: 329 VIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQ 388
Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
M S PD TY+ ++D G VE A +++ R + I+ ++ +I+ G
Sbjct: 389 MSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGK 448
Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
+ +++ + + G+KPN+ITY ++ R + +++K+M ++G PN + Y
Sbjct: 449 VEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506
Score = 37.7 bits (86), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 45/90 (50%)
Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
AL + + K + ++ Y + ++ K ++ A LF + +G+KP+ +T++T+IS
Sbjct: 417 ALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMIS 476
Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTY 238
L ++A F++M G P+ Y
Sbjct: 477 GFCRRGLIHEADSLFKKMKEDGFLPNESVY 506
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/374 (24%), Positives = 177/374 (47%), Gaps = 2/374 (0%)
Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
N+ + F +C A + ++ G +PD TF+TLI + ++AV +RM
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE 186
Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
GC PD +TY+S+++ R+G+ +A L + + D +ST+I G D
Sbjct: 187 NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDA 246
Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
+++++EM+ G+K +++TYN+L+ + +A + + K+M + PN T+ LL
Sbjct: 247 AISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLD 306
Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
+ + ++ +Y+EM +G+ ++ YNTL+ EA + D+ C
Sbjct: 307 VFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML-DLMVRNKCS 365
Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
PD TF+S+I +V + +F + + G N + L+Q + ++ +
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425
Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIE 527
+ G+ PD G LL+ + K E+ ++ E ++KS LG V+ + E +
Sbjct: 426 FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCK 485
Query: 528 GDFKKEATELFNSI 541
G ++A LF S+
Sbjct: 486 GGKVEDAWNLFCSL 499
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 150/325 (46%), Gaps = 3/325 (0%)
Query: 156 TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215
T +K+S V+ YN ++ K + L DM+ R + P+ +TF+ L+
Sbjct: 256 TKGIKSS--VVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGK 313
Query: 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST 275
+A E ++ M + G P+ +TY++++D Y + A + D K D F++
Sbjct: 314 LQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTS 373
Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335
LIK Y D + V+ + G+ N +TY+ L+ ++ + + +++EM +G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433
Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
+ P+ TY LL E L ++ ++++ M L + +Y T++ G ++A+
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493
Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
+F + + +P+ T++ MI+ +G +SEA + +M E G PN +LI+
Sbjct: 494 NLFCSL-PCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552
Query: 456 YGKAQRTDDVVRALNRLPELGITPD 480
+ + + + + G + D
Sbjct: 553 HLRDGDLTASAKLIEEMKSCGFSAD 577
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 139/299 (46%), Gaps = 1/299 (0%)
Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
D A LF +M+ P V FS S N +++ +++ G + T + M
Sbjct: 70 DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129
Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
I+ + R A+ + + + D F+TLIK G + + + M G
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189
Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
+P+++TYN++++ + R+ + ++M + + + TY++++ + R + +S
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249
Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
+++EM+ KG++ SV YN+L+ G ++ + +DM S E P+ TF+ ++ +
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE-IVPNVITFNVLLDVF 308
Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
GK+ EA ++ EM+ G PN+ +L+ Y R + L+ + +PD
Sbjct: 309 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367
Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 113/236 (47%), Gaps = 1/236 (0%)
Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
K S +++ + +K + + +D ++F ++ RG+ + VT+S L+ + A
Sbjct: 363 KCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 422
Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
E F+ M S G PD +TY ++D G +E A +++ + K + ++T+I+
Sbjct: 423 EELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482
Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
G + N++ + GVKPN++TY ++ + + + + ++M ++G +PN
Sbjct: 483 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542
Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
TY +L+RA+ R + + EMK G + ++ M G D++F
Sbjct: 543 DCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLS-GELDKSF 597
Score = 39.7 bits (91), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 70/145 (48%), Gaps = 2/145 (1%)
Query: 137 IILNNMTNPDTAALALTYFTN--KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
I+L+ + + AL F + K K +++Y ++ K ++ A LF + +
Sbjct: 443 ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK 502
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
GVKP+ +T++ +IS ++A +M G P+ TY+++I A+ R G++ +
Sbjct: 503 GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTAS 562
Query: 255 FGLYDRARNEKWRIDPNAFSTLIKL 279
L + ++ + D ++ +I +
Sbjct: 563 AKLIEEMKSCGFSADASSIKMVIDM 587
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 182/377 (48%), Gaps = 6/377 (1%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
I++N LAL +K E ++ + + + + + +A L D M
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
+P+ VTF+TLI ++N ++AV +RM + GC PD TY ++++ + G++++A
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239
Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
L + K D ++T+I N + LN++ EM G++PN++TYN+L+
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299
Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
+ R + +M + ++PN T+++L+ A+ + + +Y EM ++ +
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359
Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAM 433
+ Y++L+ DEA +FE M S++C P+ T++++I C + +V E +
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLIKGFCKAK-RVEEGMEL 417
Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
F EM + G N +LIQ +A D + ++ G+ PD LL+ + +
Sbjct: 418 FREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCK 477
Query: 494 TPKEELGKLV-ECVEKS 509
K E +V E ++KS
Sbjct: 478 YGKLEKALVVFEYLQKS 494
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 167/334 (50%), Gaps = 5/334 (1%)
Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
AL+L K K +V++Y + ++++ A LF +M ++G++P+ VT+++LI
Sbjct: 239 ALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 298
Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
C + A M +P+ +T+S++IDA+ + G + A LYD K I
Sbjct: 299 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI--KRSI 356
Query: 269 DPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
DP+ F S+LI + D +++E M + PN++TYN L+ +AKR +
Sbjct: 357 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGME 416
Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
+++EM+ GL N TY +L++ +A + ++++M G+ + Y+ LL
Sbjct: 417 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 476
Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
G ++A +FE ++ S+ +PD +T++ MI GKV + +F + G +PN+
Sbjct: 477 KYGKLEKALVVFEYLQKSK-MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV 535
Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
+ T++I + + ++ + E G P+
Sbjct: 536 IIYTTMISGFCRKGLKEEADALFREMKEDGTLPN 569
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 176/369 (47%), Gaps = 20/369 (5%)
Query: 94 SYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVI---ILNNMTNPDTAAL 150
+Y T N L K D+D S+L+ + +E D VI I++ + N
Sbjct: 222 TYGTVVNGLCK-RGDIDL-------ALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVND 273
Query: 151 ALTYFT---NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207
AL FT NK V+ YN ++ A RL DM++R + P+ VTFS LI
Sbjct: 274 ALNLFTEMDNK-GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 332
Query: 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
+A + ++ M DPD TYSS+I+ + ++ A +++ ++
Sbjct: 333 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF 392
Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
+ ++TLIK + A + + ++ EM G+ N +TYN L+ + +A + I
Sbjct: 393 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 452
Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMC 385
+K+M +G+ P+ TY+ LL G +YG E L V+ +++ M+ + YN ++
Sbjct: 453 FKKMVSDGVPPDIITYSILLD--GLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 510
Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
G ++ +++F + S + +P+ +++MI+ +G EA+A+F EM E G PN
Sbjct: 511 CKAGKVEDGWDLFCSL-SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPN 569
Query: 446 LFVLTSLIQ 454
+LI+
Sbjct: 570 SGTYNTLIR 578
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 154/329 (46%), Gaps = 12/329 (3%)
Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWF 223
++ +N + K D L + M + + D +++ LI+C R + LP A+
Sbjct: 80 IVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLP-LALAVL 138
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
+M G +PD +T SS+++ Y + A L D+ +++ + F+TLI
Sbjct: 139 GKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLH 198
Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
+ + + M A G +P++ TY +++ + + ++ K+M + + Y
Sbjct: 199 NKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 258
Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
+++ A + D L+++ EM KG++ +V YN+L+ + G +A + DM
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-I 317
Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
P+ TFS++I GK+ EAE +++EM++ +P++F +SLI + R D
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377
Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMT 492
+ + EL I+ D C NV+T
Sbjct: 378 EA----KHMFELMISKD-----CFPNVVT 397
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 139/299 (46%), Gaps = 42/299 (14%)
Query: 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219
K + V+ ++ + F K L +AE+L+D+M+ R + PD T+S+LI+ M++ ++A
Sbjct: 320 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 379
Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
FE M S C P+ +TY+++I + +A VE L+ + ++TLI+
Sbjct: 380 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG 439
Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM------------------------ 315
AG+ D ++++M + GV P++ITY+ LLD +
Sbjct: 440 LFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 499
Query: 316 --------------GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
G+ + W ++ ++ G+ PN Y +++ + R E+ +
Sbjct: 500 IYTYNIMIEGMCKAGKVEDGWD---LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 556
Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
++REMKE G + YNTL+ G + E+ ++M+S D+ T S +I +
Sbjct: 557 LFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSC-GFVGDASTISMVINM 614
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 4/225 (1%)
Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
V+ YN +K F K + +++ LF +M RG+ + VT++TLI + A + F+
Sbjct: 395 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 454
Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
+M S G PD +TYS ++D + G +E A +++ + K D ++ +I+ AG
Sbjct: 455 KMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAG 514
Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
+ +++ + GVKPN+I Y ++ R + +++EM ++G PN TY
Sbjct: 515 KVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYN 574
Query: 345 SLLRAYGRARYGEDTLS--VYREMKEKGMQLSVTLYNTLLAMCAD 387
+L+RA R R G+ S + +EM+ G + + ++ M D
Sbjct: 575 TLIRA--RLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHD 617
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%)
Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
AL + + K K ++ YN+ ++ K ++ LF + +GVKP+ + ++T+IS
Sbjct: 484 ALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMIS 543
Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
L +A F M G P++ TY+++I A R G+ + L R+ +
Sbjct: 544 GFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVG 603
Query: 269 DPNAFSTLIKL 279
D + S +I +
Sbjct: 604 DASTISMVINM 614
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 143/302 (47%), Gaps = 2/302 (0%)
Query: 158 KLKASKEVILYNVTMKVFRKC-RDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
++ S ++ YNV + VF K R K + D+M +G+K D T ST++S L
Sbjct: 238 EMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLL 297
Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276
+A E+F + S G +P +TY++++ +G+AG A + D ++ L
Sbjct: 298 REAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNEL 357
Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
+ Y AG V E M GV PN ITY ++D G+A + + ++ M + G
Sbjct: 358 VAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGC 417
Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
PN TY ++L G+ + + + +MK G + +NT+LA+C + G
Sbjct: 418 VPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNR 477
Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
+F +MKS +PD TF+++I+ G +A M+ EM AGF + +L+
Sbjct: 478 VFREMKSC-GFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNAL 536
Query: 457 GK 458
+
Sbjct: 537 AR 538
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 165/359 (45%), Gaps = 16/359 (4%)
Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217
KL KEV+L N ++ + L R FD + ++ D V+ L+ +
Sbjct: 102 KLLCKKEVVLVNSIVE-----QPLTGLSRFFDSVKSELLRTDLVS---LVKGLDDSGHWE 153
Query: 218 KAVEWFERMP----SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
+AV FE + S D + GR +A L D+ +++ +D A+
Sbjct: 154 RAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAY 213
Query: 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMT 332
+T++ Y G ++ ++++E MK +G P ++TYN +LD G+ R W ++ + EM
Sbjct: 214 TTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMR 273
Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
GL + T +++L A R + + E+K G + YN LL + G
Sbjct: 274 SKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYT 333
Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
EA + ++M+ + +C DS T++ ++ G EA + M + G PN T++
Sbjct: 334 EALSVLKEMEEN-SCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTV 392
Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE-ELGKLVECVEKSN 510
I YGKA + D+ ++ + E G P+ +L+++ + + E+ K++ C KSN
Sbjct: 393 IDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKML-CDMKSN 450
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 147/316 (46%), Gaps = 18/316 (5%)
Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
I Y + + K D+A +LF M + G P+ T++ ++S + N+ ++
Sbjct: 387 ITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCD 446
Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
M S GC P+ T+++M+ G G + ++ ++ + D + F+TLI YG G+
Sbjct: 447 MKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGS 506
Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV-KTIYKEMTDNGLSPNWNTYA 344
+Y EM G + TYN LL+ + R K W+ + + +M G P +Y+
Sbjct: 507 EVDASKMYGEMTRAGFNACVTTYNALLNALAR-KGDWRSGENVISDMKSKGFKPTETSYS 565
Query: 345 SLLRAYGRARYGEDTLSVYR---EMKEKGMQLSVTLYNTLLAM---CADVGYTDEAFEIF 398
+L+ Y + G + L + R +KE + S L TLL C + ++ AF +F
Sbjct: 566 LMLQCYAK---GGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLF 622
Query: 399 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY-- 456
+ +PD F+SM++I + +AE + + E G P+L SL+ Y
Sbjct: 623 K----KHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVR 678
Query: 457 -GKAQRTDDVVRALNR 471
G+ + +++++ L +
Sbjct: 679 RGECWKAEEILKTLEK 694
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 149/331 (45%), Gaps = 1/331 (0%)
Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
AL L Y + YN + + K ++ ++ DM G P+ T++T+++
Sbjct: 405 ALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLA 464
Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
+ F M S G +PD T++++I AYGR G+ A +Y +
Sbjct: 465 LCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNA 524
Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
++ L+ G++ NV +MK+ G KP +Y+ +L + ++ I
Sbjct: 525 CVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIE 584
Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
+ + + P+W +LL A + R + + K+ G + + ++N++L++
Sbjct: 585 NRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRN 644
Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
D+A I E ++ + PD T++S++ + RG+ +AE + + ++ +P+L
Sbjct: 645 NMYDQAEGILESIR-EDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVS 703
Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
++I+ + + + VR L+ + E GI P
Sbjct: 704 YNTVIKGFCRRGLMQEAVRMLSEMTERGIRP 734
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 146/323 (45%), Gaps = 17/323 (5%)
Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
+ YN + + + +A + + M +GV P+ +T++T+I ++A++ F
Sbjct: 352 VTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYS 411
Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPN--AFSTLIKLYGT 282
M GC P+ TY++++ G+ EM L D N PN ++T++ L G
Sbjct: 412 MKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNG---CSPNRATWNTMLALCGN 468
Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
G V+ EMK+ G +P+ T+N L+ GR +Y EMT G + T
Sbjct: 469 KGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTT 528
Query: 343 YASLLRAYGRA---RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
Y +LL A R R GE+ +S +MK KG + + T Y +L+ C G E E
Sbjct: 529 YNALLNALARKGDWRSGENVIS---DMKSKGFKPTETSY-SLMLQCYAKGGNYLGIERIE 584
Query: 400 DMKSSENCQPDSWTFSSMITICS--CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
+ P SW + + + CR ++ +E F + G++P++ + S++ +
Sbjct: 585 NRIKEGQIFP-SWMLLRTLLLANFKCRA-LAGSERAFTLFKKHGYKPDMVIFNSMLSIFT 642
Query: 458 KAQRTDDVVRALNRLPELGITPD 480
+ D L + E G++PD
Sbjct: 643 RNNMYDQAEGILESIREDGLSPD 665
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+++ YN +K F + + +A R+ +M +RG++P T++T +S + + +
Sbjct: 700 DLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVI 759
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
E M C P+ LT+ ++D Y RAG A + +
Sbjct: 760 ECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIK 798
>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840
OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2
Length = 840
Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/353 (23%), Positives = 166/353 (47%), Gaps = 36/353 (10%)
Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
++ A RL +LD G P+ VTF TLI+ ++A + F+ M G +PD + YS+
Sbjct: 267 IEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYST 326
Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
+ID Y +AG + M L+ +A ++ ++D FS+ I +Y +G+ VY+ M G
Sbjct: 327 LIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQG 386
Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
+ PN++TY L+ + + R ++ +Y ++ G+ P+ TY+SL+ + +
Sbjct: 387 ISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGF 446
Query: 361 SVYREMKEKG-----------------------------------MQLSVTLYNTLLAMC 385
++Y +M + G ++L+V ++N+L+
Sbjct: 447 ALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGW 506
Query: 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
+ DEA ++F M +PD TF++++ + G++ EA +F M + G EP+
Sbjct: 507 CRLNRFDEALKVFRLM-GIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPD 565
Query: 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
+LI + K + ++ + + I+ D C +++++ + + E
Sbjct: 566 ALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIE 618
Score = 113 bits (282), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/371 (22%), Positives = 164/371 (44%), Gaps = 38/371 (10%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+V++++ T+ V+ K DL A ++ ML +G+ P+ VT++ LI + +A +
Sbjct: 355 DVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMY 414
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD------------------------ 259
++ G +P +TYSS+ID + + GN+ F LY+
Sbjct: 415 GQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQ 474
Query: 260 -----------RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
+ + R++ F++LI + FD L V+ M G+KP++ T+
Sbjct: 475 GLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATF 534
Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
++ R + ++ M GL P+ Y +L+ A+ + L ++ M+
Sbjct: 535 TTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQR 594
Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKV 427
+ + + N ++ + ++A + F ++ + +PD T+++MI CS R ++
Sbjct: 595 NKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGK-MEPDIVTYNTMICGYCSLR-RL 652
Query: 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487
EAE +F + F PN LT LI K D +R + + E G P+ GCL
Sbjct: 653 DEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCL 712
Query: 488 LNVMTQTPKEE 498
++ +++ E
Sbjct: 713 MDWFSKSVDIE 723
Score = 109 bits (273), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 147/317 (46%), Gaps = 1/317 (0%)
Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
V+++N + + + D+A ++F M G+KPD TF+T++ + M +A+ F
Sbjct: 496 VVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFF 555
Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
RM G +PDAL Y ++IDA+ + + L+D + K D + +I L
Sbjct: 556 RMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCH 615
Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
+ + + ++P+++TYN ++ +R + + I++ + PN T
Sbjct: 616 RIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLT 675
Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
L+ + + + ++ M EKG + + Y L+ + + +F++FE+M+
Sbjct: 676 ILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQ-E 734
Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464
+ P ++S +I RG+V EA +F++ ++A P++ LI+ Y K R +
Sbjct: 735 KGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVE 794
Query: 465 VVRALNRLPELGITPDD 481
+ G+ PDD
Sbjct: 795 AALLYEHMLRNGVKPDD 811
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 138/318 (43%), Gaps = 3/318 (0%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEW 222
++I Y+ + + K L +LF L +GVK D V FS+ I + +L +V +
Sbjct: 320 DLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVY 379
Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
+RM G P+ +TY+ +I + G + AFG+Y + +S+LI +
Sbjct: 380 -KRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCK 438
Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
GN +YE+M +G P+++ Y L+D + + +M + N
Sbjct: 439 CGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVV 498
Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
+ SL+ + R ++ L V+R M G++ V + T++ + G +EA +F M
Sbjct: 499 FNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRM- 557
Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
+PD+ + ++I K + +F+ M ++ V +I K R
Sbjct: 558 FKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRI 617
Query: 463 DDVVRALNRLPELGITPD 480
+D + N L E + PD
Sbjct: 618 EDASKFFNNLIEGKMEPD 635
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 37/224 (16%)
Query: 151 ALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
A +F N ++ E ++ YN + + R LD+AER+F+ + P+ VT + LI
Sbjct: 620 ASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIH 679
Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
NN + A+ F M G P+A+TY ++D + ++ ++E +F L
Sbjct: 680 VLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKL----------- 728
Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
+EEM+ G+ P++++Y+ ++D + + R + I+
Sbjct: 729 ------------------------FEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIF 764
Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
+ D L P+ YA L+R Y + + +Y M G++
Sbjct: 765 HQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVK 808
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 130/304 (42%), Gaps = 16/304 (5%)
Query: 117 DDVFSVLRCLGDDFLEQDC-----VIILNNMTNPDTAALALTYFTNKLKASKEVILYNVT 171
D+ V R +G ++ D V+ ++ M AL L + K+ + + Y
Sbjct: 513 DEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTL 572
Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPD----NVTFSTLISCARMNNLPNKAVEWFERMP 227
+ F K +LFD M + D NV L C R+ + A ++F +
Sbjct: 573 IDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIED----ASKFFNNLI 628
Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
+PD +TY++MI Y ++ A +++ + + + + LI + + D
Sbjct: 629 EGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMD 688
Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
G + ++ M G KPN +TY L+D ++ +++EM + G+SP+ +Y+ ++
Sbjct: 689 GAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIII 748
Query: 348 RAY-GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
R R E T +++ + + + V Y L+ VG EA ++E M +
Sbjct: 749 DGLCKRGRVDEAT-NIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRN-G 806
Query: 407 CQPD 410
+PD
Sbjct: 807 VKPD 810
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 155/318 (48%), Gaps = 3/318 (0%)
Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
+I Y + + + L + G+KPD + F+ +I+ + + ++A++ FE
Sbjct: 354 LITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFE 413
Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA-RNEKWRIDPNAFSTLIKLYGTA 283
+M GC P A T++++I YG+ G +E + L D R+E + + + L++ +
Sbjct: 414 KMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQ 473
Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TIYKEMTDNGLSPNWNT 342
+ N+ +M++ GVKP+++T+N L R + I M N + PN T
Sbjct: 474 RKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRT 533
Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
+++ Y E+ L + MKE G+ ++ ++N+L+ ++ D E+ D+
Sbjct: 534 CGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVV-DLM 592
Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
+PD TFS+++ S G + E ++ +MLE G +P++ + L + Y +A
Sbjct: 593 EEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEP 652
Query: 463 DDVVRALNRLPELGITPD 480
+ + LN++ + G+ P+
Sbjct: 653 EKAEQILNQMRKFGVRPN 670
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 133/313 (42%), Gaps = 20/313 (6%)
Query: 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
C D+ +L + +++RG P +A F + G P +T
Sbjct: 316 CGDVRSRTKLMNGLIERG-------------------RPQEAHSIFNTLIEEGHKPSLIT 356
Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
Y++++ A R + L + + D F+ +I +GN D + ++E+MK
Sbjct: 357 YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMK 416
Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYG 356
G KP T+N L+ G+ + + + M D L PN T L++A+ R
Sbjct: 417 ESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKI 476
Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
E+ ++ +M+ G++ V +NTL A +G T A ++ +P+ T +
Sbjct: 477 EEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGT 536
Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
++ GK+ EA F M E G PNLFV SLI+ + D V ++ + E G
Sbjct: 537 IVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFG 596
Query: 477 ITPDDRFCGCLLN 489
+ PD L+N
Sbjct: 597 VKPDVVTFSTLMN 609
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 123/264 (46%), Gaps = 16/264 (6%)
Query: 91 KEKSYDTR-----YNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLE--QDCVIILNNMT 143
K +SY + +N+L K A + S ED + + R L + + C I+N
Sbjct: 485 KMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPRMLHNKVKPNVRTCGTIVNGYC 542
Query: 144 NPDTAALALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNV 201
AL +F +L + ++N +K F D+D + D M + GVKPD V
Sbjct: 543 EEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVV 602
Query: 202 TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
TFSTL++ + E + M G DPD +S + Y RAG E A + ++
Sbjct: 603 TFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQM 662
Query: 262 RNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRA 318
R K+ + PN ++ +I + +AG + VY++M I G+ PN+ TY L+ G A
Sbjct: 663 R--KFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEA 720
Query: 319 KRPWQVKTIYKEMTDNGLSPNWNT 342
K+PW+ + + K+M + P T
Sbjct: 721 KQPWKAEELLKDMEGKNVVPTRKT 744
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 125/253 (49%), Gaps = 5/253 (1%)
Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMP 227
N+ ++ + R +++A + M GVKPD VTF+TL AR+ + RM
Sbjct: 464 NILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRML 523
Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGN 285
P+ T ++++ Y G +E A + R + + + PN F++LIK + +
Sbjct: 524 HNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMK--ELGVHPNLFVFNSLIKGFLNIND 581
Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
DG V + M+ GVKP+++T++ L++ + + IY +M + G+ P+ + ++
Sbjct: 582 MDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSI 641
Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
L + Y RA E + +M++ G++ +V +Y +++ G +A ++++ M
Sbjct: 642 LAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIV 701
Query: 406 NCQPDSWTFSSMI 418
P+ T+ ++I
Sbjct: 702 GLSPNLTTYETLI 714
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 7/193 (3%)
Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
+++A R F M + GV P+ F++LI N + E + M FG PD +T+S+
Sbjct: 547 MEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFST 606
Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
+++A+ G+++ +Y D +AFS L K Y AG + + +M+ G
Sbjct: 607 LMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFG 666
Query: 301 VKPNMITYNNLLD---TMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYG 356
V+PN++ Y ++ + G K+ QV YK+M GLSPN TY +L+ +G A+
Sbjct: 667 VRPNVVIYTQIISGWCSAGEMKKAMQV---YKKMCGIVGLSPNLTTYETLIWGFGEAKQP 723
Query: 357 EDTLSVYREMKEK 369
+ ++M+ K
Sbjct: 724 WKAEELLKDMEGK 736
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 100/202 (49%), Gaps = 5/202 (2%)
Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
G KP++ITY L+ + R K + ++ ++ NGL P+ + +++ A + +
Sbjct: 349 GHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQA 408
Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
+ ++ +MKE G + + + +NTL+ +G +E+ + + M E QP+ T + ++
Sbjct: 409 MKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQ 468
Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT---DDVVRALNRLPELG 476
+ K+ EA + +M G +P++ +L + Y + T +D++ + R+
Sbjct: 469 AWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPRMLHNK 526
Query: 477 ITPDDRFCGCLLNVMTQTPKEE 498
+ P+ R CG ++N + K E
Sbjct: 527 VKPNVRTCGTIVNGYCEEGKME 548
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 182/371 (49%), Gaps = 7/371 (1%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
I++N LAL +K E ++ + + + + + +A L D M
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
G +P+ VTF+TLI ++N ++A+ +RM + GC PD +TY +++ + G+ ++A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240
Query: 255 FGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
F L ++ E+ +++P ++T+I + D LN+++EM+ G++PN++TY++L+
Sbjct: 241 FNLLNKM--EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 298
Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
+ R + +M + ++P+ T+++L+ A+ + + +Y EM ++ +
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 358
Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
S+ Y++L+ DEA ++FE M S++C PD T++++I +V E
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFM-VSKHCFPDVVTYNTLIKGFCKYKRVEEGME 417
Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
+F EM + G N LIQ +A D + G+ P+ LL+ +
Sbjct: 418 VFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 477
Query: 493 QTPKEELGKLV 503
+ K E +V
Sbjct: 478 KNGKLEKAMVV 488
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 174/395 (44%), Gaps = 44/395 (11%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
+++N + LA NK++ K V++YN + K + +D A LF +M
Sbjct: 226 VVVNGLCKRGDTDLAFN-LLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284
Query: 194 RGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253
+G++P+ VT+S+LISC + A M +PD T+S++IDA+ + G +
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344
Query: 254 AFGLYDRARNEKWRIDPN-------------------------------------AFSTL 276
A LYD K IDP+ ++TL
Sbjct: 345 AEKLYDEM--VKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402
Query: 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336
IK + + + V+ EM G+ N +TYN L+ + +A + I+KEM +G+
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462
Query: 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
PN TY +LL + E + V+ ++ M+ ++ YN ++ G ++ ++
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522
Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
+F ++ S + +PD +++MI+ +G EA+A+F EM E G PN +LI+
Sbjct: 523 LFCNL-SLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRAR 581
Query: 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491
+ + + + G D G + N++
Sbjct: 582 LRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 616
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 159/333 (47%), Gaps = 3/333 (0%)
Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
A+AL K + +I ++ + K D L + M + G+ ++ T+S LI+
Sbjct: 65 AVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILIN 124
Query: 209 C-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267
C R + LP A+ +M G +P+ +T SS+++ Y + + A L D+ ++
Sbjct: 125 CFCRRSQLP-LALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQ 183
Query: 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 327
+ F+TLI + + + M A G +P+++TY +++ + + +
Sbjct: 184 PNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNL 243
Query: 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
+M L P Y +++ + ++ +D L++++EM+ KG++ +V Y++L++ +
Sbjct: 244 LNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCN 303
Query: 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447
G +A + DM PD +TFS++I GK+ EAE +++EM++ +P++
Sbjct: 304 YGRWSDASRLLSDM-IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIV 362
Query: 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
+SLI + R D+ + + PD
Sbjct: 363 TYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 395
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 143/300 (47%), Gaps = 3/300 (1%)
Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
LD A LF +M+ P + FS L+S A+MN + + E+M + G + TYS
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKF-DVVISLGEQMQNLGIPHNHYTYS 120
Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299
+I+ + R + +A + + + + S+L+ Y + + + ++M
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 359
G +PN +T+N L+ + + + + M G P+ TY ++ + +
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240
Query: 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
++ +M++ ++ V +YNT++ + D+A +F++M+ ++ +P+ T+SS+I+
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEME-TKGIRPNVVTYSSLIS 299
Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
G+ S+A + ++M+E P++F ++LI + K + + + + + + I P
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 359
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 114/232 (49%), Gaps = 1/232 (0%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+V+ YN +K F K + +++ +F +M RG+ + VT++ LI + A E F
Sbjct: 395 DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIF 454
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
+ M S G P+ +TY++++D + G +E A +++ + K ++ +I+ A
Sbjct: 455 KEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 514
Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
G + +++ + GVKP+++ YN ++ R + ++KEM ++G PN Y
Sbjct: 515 GKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCY 574
Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
+L+RA R E + + +EM+ G + + M D G D++F
Sbjct: 575 NTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD-GRLDKSF 625
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/410 (22%), Positives = 197/410 (48%), Gaps = 6/410 (1%)
Query: 137 IILNNMTNPDTAALALTYFTNKLKASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
I +N +LAL +K E ++ + + + + + A L D M++
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
G KPD TF+TLI ++N ++AV ++M GC PD +TY ++++ + G++++A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
L ++ + + + F+T+I + + ++++ EM+ G++PN++TYN+L++
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINC 302
Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
+ R + M + ++PN T+ +L+ A+ + + ++ EM ++ +
Sbjct: 303 LCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPD 362
Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAM 433
YN L+ DEA ++F+ M S++C P+ T++++I C C+ +V + +
Sbjct: 363 TITYNLLINGFCMHNRLDEAKQMFKFM-VSKDCLPNIQTYNTLINGFCKCK-RVEDGVEL 420
Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
F EM + G N T++IQ + +A D ++ + D LL+ +
Sbjct: 421 FREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCS 480
Query: 494 TPKEELGKLV-ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 542
K + ++ + ++KS +L + + E + EA +LF S+S
Sbjct: 481 YGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLS 530
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 170/356 (47%), Gaps = 45/356 (12%)
Query: 138 ILNNMTNPDTAALALTYFTNKLKASK---EVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
++N + LAL NK++A++ V+++N + K R ++ A LF +M +
Sbjct: 229 VVNGLCKRGDIDLALNLL-NKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETK 287
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
G++P+ VT+++LI+C + A M +P+ +T++++IDA+ + G + A
Sbjct: 288 GIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEA 347
Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
L++ D ++ LI + D +++ M + PN+ TYN L++
Sbjct: 348 EKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLING 407
Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY------------------------ 350
+ KR +++EM+ GL N TY ++++ +
Sbjct: 408 FCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTD 467
Query: 351 ---------GRARYGE-DT-LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
G YG+ DT L +++ +++ M+L++ +YNT++ G EA+++F
Sbjct: 468 IMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLF- 526
Query: 400 DMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
S + +PD T+++MI+ +CS R + EA+ +F +M E G PN +LI+
Sbjct: 527 ---CSLSIKPDVVTYNTMISGLCSKR-LLQEADDLFRKMKEDGTLPNSGTYNTLIR 578
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 149/352 (42%), Gaps = 42/352 (11%)
Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
++ +N + K + L + M G+ D T+S I+C + + A+
Sbjct: 83 IVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLA 142
Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK------ 278
+M G +PD +T SS+++ Y + + A L D+ ++ D F+TLI
Sbjct: 143 KMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHN 202
Query: 279 ----------------------LYGTA-------GNFDGCLNVYEEMKAIGVKPNMITYN 309
YGT G+ D LN+ +M+A +K N++ +N
Sbjct: 203 KASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFN 262
Query: 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA---YGRARYGEDTLSVYREM 366
++D++ + + ++ EM G+ PN TY SL+ YGR LS M
Sbjct: 263 TIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLS---NM 319
Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
EK + +V +N L+ G EA ++ E+M + PD+ T++ +I +
Sbjct: 320 LEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEM-IQRSIDPDTITYNLLINGFCMHNR 378
Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 478
+ EA+ MF M+ PN+ +LI + K +R +D V + + G+
Sbjct: 379 LDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLV 430
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/301 (21%), Positives = 137/301 (45%), Gaps = 3/301 (0%)
Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
+D A LF DM+ P V F+ L+S N + E+M + G D TYS
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123
Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
I+ + R + +A + + + D S+L+ Y + + + ++M +G
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183
Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
KP+ T+ L+ + + + + +M G P+ TY +++ + + L
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243
Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
++ +M+ ++ +V ++NT++ + + A ++F +M+ ++ +P+ T++S+I
Sbjct: 244 NLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEME-TKGIRPNVVTYNSLIN- 301
Query: 421 CSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
C C G+ S+A + + MLE PN+ +LI + K + + + + + I P
Sbjct: 302 CLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDP 361
Query: 480 D 480
D
Sbjct: 362 D 362
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 110/228 (48%), Gaps = 4/228 (1%)
Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
YN + F KC+ ++ LF +M RG+ + VT++T+I + A F++M
Sbjct: 401 YNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMV 460
Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
S D +TYS ++ G ++ A ++ + + ++ ++T+I+ AG
Sbjct: 461 SNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVG 520
Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
+++ ++ +KP+++TYN ++ + + + ++++M ++G PN TY +L+
Sbjct: 521 EAWDLF---CSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLI 577
Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
RA R + + +EM+ G + + + M D G D++F
Sbjct: 578 RANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNMLHD-GRLDKSF 624
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 164/370 (44%), Gaps = 36/370 (9%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+V+ Y + F K D DKA + +MLDRG+ PD VT++++I+ +KA+E
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
M G PD +TY+S++ Y +G + A G + R++ D +S L+
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314
Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
G +++ M G+KP + TY LL ++ + M NG+ P+ +
Sbjct: 315 GRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVF 374
Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
+ L+ AY + + + V+ +M+++G+ + Y ++ + G ++A FE M
Sbjct: 375 SILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM-I 433
Query: 404 SENCQPDSWTFSSMI-TICSC----------------------------------RGKVS 428
E P + ++S+I +C+C G+V
Sbjct: 434 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVI 493
Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
E+E +F M+ G +PN+ +LI Y A + D+ ++ L+ + +G+ P+ L+
Sbjct: 494 ESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 553
Query: 489 NVMTQTPKEE 498
N + + E
Sbjct: 554 NGYCKISRME 563
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 4/293 (1%)
Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLD---RGVKPDNVTFSTLISCARMNNLPNKAVE 221
V YN+ +K +A L M D G PD V+++T+I+ +KA
Sbjct: 158 VFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYS 217
Query: 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 281
+ M G PD +TY+S+I A +A ++ A + + D +++++ Y
Sbjct: 218 TYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYC 277
Query: 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341
++G + ++M++ GV+P+++TY+ L+D + + R + + I+ MT GL P
Sbjct: 278 SSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEIT 337
Query: 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
TY +LL+ Y + + M G+ +++ L+ A G D+A +F M
Sbjct: 338 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKM 397
Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
+ + P++ T+ ++I I G+V +A F +M++ G P V SLI
Sbjct: 398 R-QQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIH 449
Score = 99.4 bits (246), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 81/379 (21%), Positives = 174/379 (45%), Gaps = 2/379 (0%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
E+ Y ++ + L + L D M+ G+ PD+ FS LI ++A+ F
Sbjct: 335 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVF 394
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
+M G +P+A+TY ++I ++G VE A +++ +E +++LI T
Sbjct: 395 SKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTC 454
Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
++ + EM G+ N I +N+++D+ + R + + +++ M G+ PN TY
Sbjct: 455 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITY 514
Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
+L+ Y A ++ + + M G++ + Y+TL+ + ++A +F++M+S
Sbjct: 515 NTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574
Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
S PD T++ ++ + + A+ ++ + E+G + L ++ K + TD
Sbjct: 575 S-GVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTD 633
Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL-GYVVKLLLE 522
D ++ L + + + R +++ + + + + K + SN + Y L+
Sbjct: 634 DALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMA 693
Query: 523 EQDIEGDFKKEATELFNSI 541
E I +E +LF S+
Sbjct: 694 ENIIGQGLLEELDQLFLSM 712
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 145/365 (39%), Gaps = 46/365 (12%)
Query: 182 DKAERLFDDMLDRGVKPDNVTFS-TLISCARMNNLPNKAVEWFERMPSFGCD---PDALT 237
+ A +FD++L RG + L AR + P AV + RM G D PD T
Sbjct: 32 EDARHVFDELLRRGRGASIYGLNRALADVAR--DSPAAAVSRYNRMARAGADEVTPDLCT 89
Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEM 296
Y +I RAG +++ F + +R+D AF+ L+K L D V M
Sbjct: 90 YGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 149
Query: 297 KAIGVKPNMITYNNLL--------------------DTMGRAKRPWQVK----------- 325
+G PN+ +YN LL D G P V
Sbjct: 150 TELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKE 209
Query: 326 -------TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378
+ Y EM D G+ P+ TY S++ A +A+ + + V M + G+ Y
Sbjct: 210 GDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTY 269
Query: 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
N++L G EA + M+S + +PD T+S ++ G+ EA +F+ M
Sbjct: 270 NSILHGYCSSGQPKEAIGFLKKMRS-DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT 328
Query: 439 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 498
+ G +P + +L+Q Y ++ L+ + GI PD L+ + K +
Sbjct: 329 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVD 388
Query: 499 LGKLV 503
LV
Sbjct: 389 QAMLV 393
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 12/192 (6%)
Query: 158 KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS----CARMN 213
++ VI YN + + +D+A +L M+ G+KP+ VT+STLI+ +RM
Sbjct: 504 RIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRME 563
Query: 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF 273
+ A+ F+ M S G PD +TY+ ++ + A LY R +I+ + +
Sbjct: 564 D----ALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTY 619
Query: 274 STLIKLYGTAGN--FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
+ I L+G N D L +++ + + +K T+N ++D + + R + K ++
Sbjct: 620 N--IILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 677
Query: 332 TDNGLSPNWNTY 343
+ NGL PN+ TY
Sbjct: 678 SSNGLVPNYWTY 689
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 145/348 (41%), Gaps = 41/348 (11%)
Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228
N + F K D +R F DM+ G +P T++ +I C A FE M
Sbjct: 231 NGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKF 290
Query: 229 FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 288
G PD +TY+SMID +G+ G ++ ++ ++ D ++ LI + G
Sbjct: 291 RGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPI 350
Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
L Y EMK G+KPN+++Y+ L+D + Q Y +M GL PN TY SL+
Sbjct: 351 GLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 410
Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 408
A + D + EM + G++ +V Y L+ D E MK
Sbjct: 411 ANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDA----------ERMK------ 454
Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
EAE +F +M AG PNL +LI + KA+ D +
Sbjct: 455 --------------------EAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALEL 494
Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV-----ECVEKSNS 511
LN L GI PD G + + K E K+V EC K+NS
Sbjct: 495 LNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANS 542
Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 150/318 (47%), Gaps = 3/318 (0%)
Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
A V YN+ + K D++ A LF++M RG+ PD VT++++I + V
Sbjct: 258 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 317
Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
+FE M C+PD +TY+++I+ + + G + + Y + + + ++STL+ +
Sbjct: 318 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAF 377
Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
G + Y +M+ +G+ PN TY +L+D + + EM G+ N
Sbjct: 378 CKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNV 437
Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
TY +L+ A ++ ++ +M G+ ++ YN L+ D A E+ +
Sbjct: 438 VTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNE 497
Query: 401 MKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459
+K +PD + + I +CS K+ A+ + NEM E G + N + T+L+ Y K+
Sbjct: 498 LK-GRGIKPDLLLYGTFIWGLCSLE-KIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKS 555
Query: 460 QRTDDVVRALNRLPELGI 477
+ + L+ + EL I
Sbjct: 556 GNPTEGLHLLDEMKELDI 573
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 156/352 (44%), Gaps = 35/352 (9%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+VI YN + F K L + +M G+KP+ V++STL+ + +A++++
Sbjct: 331 DVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFY 390
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF-----------------------GLYDR 260
M G P+ TY+S+IDA + GN+ AF GL D
Sbjct: 391 VDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDA 450
Query: 261 ARNEKWR----------IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
R ++ + PN +++ LI + A N D L + E+K G+KP+++ Y
Sbjct: 451 ERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLY 510
Query: 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368
+ + ++ K + EM + G+ N Y +L+ AY ++ + L + EMKE
Sbjct: 511 GTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKE 570
Query: 369 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428
++++V + L+ +A + F + + Q ++ F++MI +V
Sbjct: 571 LDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVE 630
Query: 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
A +F +M++ G P+ TSL+ K + + +++ E+G+ D
Sbjct: 631 AATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLD 682
Score = 93.6 bits (231), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 122/263 (46%), Gaps = 14/263 (5%)
Query: 220 VEWFER---MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST- 275
V W R +P FG DAL +S +ID G +E A + + + ++R+ P S
Sbjct: 180 VLWSTRNVCVPGFGV-FDAL-FSVLIDL----GMLEEAIQCFSKMK--RFRVFPKTRSCN 231
Query: 276 -LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
L+ + G D +++M G +P + TYN ++D M + + +++EM
Sbjct: 232 GLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFR 291
Query: 335 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394
GL P+ TY S++ +G+ +DT+ + EMK+ + V YN L+ G
Sbjct: 292 GLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIG 351
Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
E + +MK + +P+ ++S+++ G + +A + +M G PN + TSLI
Sbjct: 352 LEFYREMKGN-GLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 410
Query: 455 CYGKAQRTDDVVRALNRLPELGI 477
K D R N + ++G+
Sbjct: 411 ANCKIGNLSDAFRLGNEMLQVGV 433
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 111/251 (44%), Gaps = 16/251 (6%)
Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI--SCARMNNLPNKAVEWFER 225
YN + F K +++D+A L +++ RG+KPD + + T I C+ K V
Sbjct: 475 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVV--MNE 532
Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI------KL 279
M G ++L Y++++DAY ++GN L D + + F LI KL
Sbjct: 533 MKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKL 592
Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
A ++ ++ G++ N + ++D + + + T++++M GL P+
Sbjct: 593 VSKAVDYFNRIS-----NDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPD 647
Query: 340 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399
Y SL+ + + L++ +M E GM+L + Y +L+ + +A E
Sbjct: 648 RTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLE 707
Query: 400 DMKSSENCQPD 410
+M E PD
Sbjct: 708 EM-IGEGIHPD 717
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 93/186 (50%), Gaps = 1/186 (0%)
Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
++Y M + K + + L D+M + ++ VTF LI N L +KAV++F R
Sbjct: 543 LIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNR 602
Query: 226 MPS-FGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
+ + FG +A +++MID + VE A L+++ + D A+++L+ G
Sbjct: 603 ISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQG 662
Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
N L + ++M IG+K +++ Y +L+ + + + ++ +EM G+ P+
Sbjct: 663 NVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCI 722
Query: 345 SLLRAY 350
S+L+ +
Sbjct: 723 SVLKKH 728
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 2/164 (1%)
Query: 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDML-DRGVKPDNVT 202
NP T L L +L V+ + V + K + + KA F+ + D G++ +
Sbjct: 557 NP-TEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAI 615
Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
F+ +I +N A FE+M G PD Y+S++D + GNV A L D+
Sbjct: 616 FTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMA 675
Query: 263 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
++D A+++L+ + EEM G+ P+ +
Sbjct: 676 EIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEV 719
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 152/312 (48%), Gaps = 8/312 (2%)
Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEE 295
Y+ MI + R V+ A GL+ +KW P+A + LI +G AG + +N+ ++
Sbjct: 146 YNMMIRLHARHNWVDQARGLFFEM--QKWSCKPDAETYDALINAHGRAGQWRWAMNLMDD 203
Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 355
M + P+ TYNNL++ G + + + K+MTDNG+ P+ T+ +L AY R
Sbjct: 204 MLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQ 263
Query: 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTF 414
LS + MK ++ T +N ++ + +G + +A ++F M+ C+PD TF
Sbjct: 264 YSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTF 323
Query: 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474
+S++ + S +G++ A+F M+ G +PN+ +L+ Y + + L + +
Sbjct: 324 TSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ 383
Query: 475 LGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKK 532
GI PD CLLN ++ + K V + + + VV L++ G F
Sbjct: 384 NGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNG-FLA 442
Query: 533 EATELFNSISKD 544
EA E+F + +D
Sbjct: 443 EAVEIFRQMEQD 454
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 163/330 (49%), Gaps = 1/330 (0%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+V+ + M ++ +++ +F+ M+ G+KP+ V+++ L+ ++ + A+
Sbjct: 319 DVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVL 378
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
+ G PD ++Y+ ++++YGR+ A ++ R E+ + + ++ LI YG+
Sbjct: 379 GDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSN 438
Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
G + ++ +M+ G+KPN+++ LL R+K+ V T+ G++ N Y
Sbjct: 439 GFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAY 498
Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
S + +Y A E +++Y+ M++K ++ + L++ + EA ++M+
Sbjct: 499 NSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMED 558
Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
+ +SS++ S +G+V+EAE++FN+M AG EP++ TS++ Y +++
Sbjct: 559 L-SIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWG 617
Query: 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
+ GI PD C L+ +
Sbjct: 618 KACELFLEMEANGIEPDSIACSALMRAFNK 647
Score = 106 bits (264), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 133/320 (41%), Gaps = 38/320 (11%)
Query: 184 AERLFDDMLD-----------------------------------RGVKPDNVTFSTLIS 208
A L DDML GV PD VT + ++S
Sbjct: 197 AMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLS 256
Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
+ +KA+ +FE M PD T++ +I + G A L++ R ++
Sbjct: 257 AYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAEC 316
Query: 269 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
P+ F++++ LY G + C V+E M A G+KPN+++YN L+ +
Sbjct: 317 RPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALS 376
Query: 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
+ ++ NG+ P+ +Y LL +YGR+R V+ M+++ + +V YN L+
Sbjct: 377 VLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYG 436
Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
G+ EA EIF M+ + +P+ + +++ CS K + + + G N
Sbjct: 437 SNGFLAEAVEIFRQME-QDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNT 495
Query: 447 FVLTSLIQCYGKAQRTDDVV 466
S I Y A + +
Sbjct: 496 AAYNSAIGSYINAAELEKAI 515
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/317 (20%), Positives = 130/317 (41%), Gaps = 38/317 (11%)
Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCA-RMNNLPNKAVEWFERM 226
YN + + +L+KA L+ M + VK D+VTF+ LIS + RM+ P +A+ + + M
Sbjct: 498 YNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYP-EAISYLKEM 556
Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
YSS++ AY + G V A
Sbjct: 557 EDLSIPLTKEVYSSVLCAYSKQGQVTEA-------------------------------- 584
Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
+++ +MK G +P++I Y ++L +++ + ++ EM NG+ P+ ++L
Sbjct: 585 ---ESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSAL 641
Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
+RA+ + + + M+EK + + ++ + + C + A ++ + M
Sbjct: 642 MRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLP 701
Query: 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
T + M+ + GKV +F +++ +G NL L++ +
Sbjct: 702 SLSIGLT-NQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYI 760
Query: 467 RALNRLPELGITPDDRF 483
L + GI P ++
Sbjct: 761 EVLEWMSGAGIQPSNQM 777
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 2/242 (0%)
Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWF 223
V+ YN + + L +A +F M G+KP+ V+ TL++ C+R N
Sbjct: 425 VVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTV-L 483
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
S G + + Y+S I +Y A +E A LY R +K + D F+ LI
Sbjct: 484 SAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRM 543
Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
+ ++ +EM+ + + Y+++L + + + ++I+ +M G P+ Y
Sbjct: 544 SKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAY 603
Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
S+L AY + ++ EM+ G++ + L+ G F + + M+
Sbjct: 604 TSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMRE 663
Query: 404 SE 405
E
Sbjct: 664 KE 665
Score = 36.2 bits (82), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 35/184 (19%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN------ 217
+VI Y + + KA LF +M G++PD++ S L+ P+
Sbjct: 599 DVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLM 658
Query: 218 -----------------------------KAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248
+A++ + M + + M+ +G++
Sbjct: 659 DLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKS 718
Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
G VE L+ + I+ ++ L++ GN+ + V E M G++P+ Y
Sbjct: 719 GKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMY 778
Query: 309 NNLL 312
+++
Sbjct: 779 RDII 782
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/352 (26%), Positives = 163/352 (46%), Gaps = 5/352 (1%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+ I Y+ + + K D A RLFD+M D ++P ++TL+ KA++ F
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLF 291
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
E M GC P TY+ +I G+AG V+ A+G Y + D + L+ + G
Sbjct: 292 EEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKV 351
Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNT 342
G + NV+ EM P +++YN ++ + +K +V + + +M + +SP+ T
Sbjct: 352 GRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFT 411
Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
Y+ L+ Y + E L + EM EKG Y +L+ + A E+F+++K
Sbjct: 412 YSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELK 471
Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
+ S ++ MI GK+SEA +FNEM G P+++ +L+ KA
Sbjct: 472 ENFG-NVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMI 530
Query: 463 DDVVRALNRLPELGITPDDRFCGCLLNVMTQT--PKEELGKLVECVEKSNSK 512
++ L ++ E G D +LN +T P+ + ++ E ++ S K
Sbjct: 531 NEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAI-EMFETIKHSGIK 581
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 146/305 (47%), Gaps = 3/305 (0%)
Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG- 230
+K + + + KA +F R KP + T++++I K E + M + G
Sbjct: 169 VKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD 228
Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
C PD +TYS++I +Y + G + A L+D ++ + ++TL+ +Y G + L
Sbjct: 229 CFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKAL 288
Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
+++EEMK G P + TY L+ +G+A R + YK+M +GL+P+ +L+
Sbjct: 289 DLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNIL 348
Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQP 409
G+ E+ +V+ EM +V YNT++ A+ + E F+ MK +++ P
Sbjct: 349 GKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMK-ADSVSP 407
Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
+T+S +I +V +A + EM E GF P SLI GKA+R +
Sbjct: 408 SEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELF 467
Query: 470 NRLPE 474
L E
Sbjct: 468 KELKE 472
Score = 109 bits (272), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 147/310 (47%), Gaps = 11/310 (3%)
Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
+K+F+ D +KA + +K D+ +++ N+ + +W + +F
Sbjct: 71 VKIFKWGPDAEKALEVLK------LKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNF-- 122
Query: 232 DPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
D TY ++I A EM + + RN + P S L+K G A L
Sbjct: 123 QHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKAL 182
Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRA 349
+V+ + K KP TYN+++ + + + +V +Y EM + G P+ TY++L+ +
Sbjct: 183 SVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISS 242
Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
Y + + + ++ EMK+ MQ + +Y TLL + VG ++A ++FE+MK + C P
Sbjct: 243 YEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRA-GCSP 301
Query: 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469
+T++ +I G+V EA + +ML G P++ L +L+ GK R +++
Sbjct: 302 TVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVF 361
Query: 470 NRLPELGITP 479
+ + TP
Sbjct: 362 SEMGMWRCTP 371
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 138/309 (44%), Gaps = 9/309 (2%)
Query: 117 DDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKL------KASKEVILYNV 170
D+ + + + D L D V+ LNN+ N + TN + + V+ YN
Sbjct: 320 DEAYGFYKDMLRDGLTPD-VVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNT 378
Query: 171 TMK-VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
+K +F + + FD M V P T+S LI N KA+ E M
Sbjct: 379 VIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEK 438
Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
G P Y S+I+A G+A E A L+ + + ++ +IK +G G
Sbjct: 439 GFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEA 498
Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 349
++++ EMK G P++ YN L+ M +A + ++ ++M +NG + N++ +L
Sbjct: 499 VDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNG 558
Query: 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409
+ R + ++ +K G++ YNTLL A G +EA + +MK + +
Sbjct: 559 FARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMK-DKGFEY 617
Query: 410 DSWTFSSMI 418
D+ T+SS++
Sbjct: 618 DAITYSSIL 626
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 138/307 (44%), Gaps = 2/307 (0%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE-W 222
+V+ N M + K +++ +F +M P V+++T+I + V W
Sbjct: 337 DVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSW 396
Query: 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282
F++M + P TYS +ID Y + VE A L + + + P A+ +LI G
Sbjct: 397 FDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGK 456
Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
A ++ +++E+K + Y ++ G+ + + ++ EM + G P+
Sbjct: 457 AKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYA 516
Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
Y +L+ +A + S+ R+M+E G + + +N +L A G A E+FE +K
Sbjct: 517 YNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIK 576
Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
S +PD T+++++ + G EA M EM + GFE + +S++ G
Sbjct: 577 HS-GIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHE 635
Query: 463 DDVVRAL 469
D V +
Sbjct: 636 KDDVSSF 642
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 168/342 (49%), Gaps = 19/342 (5%)
Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
Y + ++ + D+A LF++M+ G+ + V ++TL+ + +KA++ F RM
Sbjct: 273 YTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMV 332
Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
GC P+ TYS +++ G + G+ + + K + +S L++ G+
Sbjct: 333 ETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEIS---KRYMTQGIYSYLVRTLSKLGHVS 389
Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
++ +M + VK +Y ++L+++ A + + + ++ + G+ + Y ++
Sbjct: 390 EAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVF 449
Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
A G+ + ++ +MK+ G + YN L+A VG DEA IFE+++ S+ C
Sbjct: 450 SALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSD-C 508
Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
+PD +++S+I G V EA F EM E G P++ ++L++C+GK +R +
Sbjct: 509 KPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVE---M 565
Query: 468 ALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 509
A + E+ + GC N++T L++C+EK+
Sbjct: 566 AYSLFEEMLVK------GCQPNIVTYNI------LLDCLEKN 595
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/389 (23%), Positives = 186/389 (47%), Gaps = 20/389 (5%)
Query: 99 YNSLV-KLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTN 157
YN L+ LA D +C ED C D++ I++ M A+ F
Sbjct: 241 YNMLLDALAKDEKACQVFED--MKKRHCRRDEY---TYTIMIRTMGRIGKCDEAVGLFNE 295
Query: 158 KLKA--SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC----AR 211
+ + V+ YN M+V K + +DKA ++F M++ G +P+ T+S L++ +
Sbjct: 296 MITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQ 355
Query: 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN 271
+ L + VE +R + G YS ++ + G+V A L+ + + + +
Sbjct: 356 LVRL-DGVVEISKRYMTQG------IYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERD 408
Query: 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331
++ ++++ AG + + ++ GV + + YN + +G+ K+ + ++++M
Sbjct: 409 SYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKM 468
Query: 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391
+G SP+ TY L+ ++GR ++ ++++ E++ + + YN+L+ G
Sbjct: 469 KKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDV 528
Query: 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451
DEA F++M+ + PD T+S+++ +V A ++F EML G +PN+
Sbjct: 529 DEAHVRFKEMQE-KGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNI 587
Query: 452 LIQCYGKAQRTDDVVRALNRLPELGITPD 480
L+ C K RT + V +++ + G+TPD
Sbjct: 588 LLDCLEKNGRTAEAVDLYSKMKQQGLTPD 616
Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 129/251 (51%), Gaps = 1/251 (0%)
Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
+Y+ ++ K + +A RLF DM VK + ++ +++ +A+E ++
Sbjct: 374 IYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKI 433
Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
G D + Y+++ A G+ + L+++ + + D ++ LI +G G
Sbjct: 434 HEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEV 493
Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346
D +N++EE++ KP++I+YN+L++ +G+ + +KEM + GL+P+ TY++L
Sbjct: 494 DEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTL 553
Query: 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406
+ +G+ E S++ EM KG Q ++ YN LL G T EA +++ MK +
Sbjct: 554 MECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMK-QQG 612
Query: 407 CQPDSWTFSSM 417
PDS T++ +
Sbjct: 613 LTPDSITYTVL 623
Score = 99.8 bits (247), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 100/195 (51%), Gaps = 4/195 (2%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+ ++YN K + + LF+ M G PD T++ LI+ ++A+ F
Sbjct: 441 DTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIF 500
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
E + C PD ++Y+S+I+ G+ G+V+ A + + + D +STL++ +G
Sbjct: 501 EELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKT 560
Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
+ +++EEM G +PN++TYN LLD + + R + +Y +M GL+P+ TY
Sbjct: 561 ERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSITY 620
Query: 344 ASLLR----AYGRAR 354
L R ++G++R
Sbjct: 621 TVLERLQSVSHGKSR 635
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 12/228 (5%)
Query: 269 DPNAFSTLIKLYGTAG---NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325
DP ++ +I + + FD ++ + M V N+ T N L+ G +
Sbjct: 132 DPFLYNRIILILSRSNLPDRFDRVRSILDSMVKSNVHGNISTVNILIGFFGNTEDLQMCL 191
Query: 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AM 384
+ K+ L N TY LL+AY R+R VY E++ G +L + YN LL A+
Sbjct: 192 RLVKKW---DLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDAL 248
Query: 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444
D ++A ++FEDMK +C+ D +T++ MI GK EA +FNEM+ G
Sbjct: 249 AKD----EKACQVFEDMK-KRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTL 303
Query: 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
N+ +L+Q K + D ++ +R+ E G P++ LLN++
Sbjct: 304 NVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLV 351
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 136/332 (40%), Gaps = 38/332 (11%)
Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLIS----------CARMNNLPNKAVEWFERMPSFG 230
D+ + D M+ V + T + LI C R+ +W +M SF
Sbjct: 152 FDRVRSILDSMVKSNVHGNISTVNILIGFFGNTEDLQMCLRL------VKKWDLKMNSF- 204
Query: 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 290
TY ++ AY R+ + AF +Y R ++D A++ L+ A + C
Sbjct: 205 ------TYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLD--ALAKDEKAC- 255
Query: 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 350
V+E+MK + + TY ++ TMGR + + ++ EM GL+ N Y +L++
Sbjct: 256 QVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVL 315
Query: 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410
+ + + + V+ M E G + + Y+ LL + G + E K
Sbjct: 316 AKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMT---- 371
Query: 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470
+S ++ S G VSEA +F +M + S+++ A +T + + L+
Sbjct: 372 QGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLS 431
Query: 471 RLPELGITPDDRFCGCLLNVMTQTPKEELGKL 502
++ E G+ D +M T LGKL
Sbjct: 432 KIHEKGVVTD--------TMMYNTVFSALGKL 455
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 95/364 (26%), Positives = 166/364 (45%), Gaps = 23/364 (6%)
Query: 112 CSATE-DDVFSVLR-CLGDDFLEQDCVI--ILNNMTNPDTAALALTYFTNKLKAS--KEV 165
CSA + + FSV+R +G F+ +LN + N LA F + +V
Sbjct: 459 CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADV 518
Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
Y + + F K +++A + F++M + G P+ VT++ LI + A E FE
Sbjct: 519 YTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 578
Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID--------------PN 271
M S GC P+ +TYS++ID + +AG VE A +++R K D PN
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPN 638
Query: 272 A--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 329
+ L+ + + + + + M G +PN I Y+ L+D + + + + + +
Sbjct: 639 VVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKT 698
Query: 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389
EM+++G TY+SL+ Y + + + V +M E +V +Y ++ VG
Sbjct: 699 EMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 758
Query: 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 449
TDEA+++ + M + CQP+ T+++MI GK+ + M G PN
Sbjct: 759 KTDEAYKLMQ-MMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 817
Query: 450 TSLI 453
LI
Sbjct: 818 RVLI 821
Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 101/414 (24%), Positives = 179/414 (43%), Gaps = 21/414 (5%)
Query: 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALT 237
C LD AE+ + +ML GV + + S+ C KA M G PD T
Sbjct: 426 CDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 485
Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
YS +++ A +E+AF L++ + D ++ ++ + AG + + EM+
Sbjct: 486 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 545
Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
+G PN++TY L+ +AK+ +++ M G PN TY++L+ + +A E
Sbjct: 546 EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVE 605
Query: 358 DTLSVYREM----------------KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 401
++ M + + +V Y LL +EA ++ + M
Sbjct: 606 KACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAM 665
Query: 402 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461
S E C+P+ + ++I GK+ EA+ + EM E GF L+ +SLI Y K +R
Sbjct: 666 -SMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKR 724
Query: 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV-KL 519
D + L+++ E P+ +++ + + K +E KL++ +E+ + V
Sbjct: 725 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTA 784
Query: 520 LLEEQDIEGDFKKEATELFNSISKDVKKAYCN--CLIDLCVNLNLLENACKLLE 571
+++ + G + L SK V Y LID C L+ A LLE
Sbjct: 785 MIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 838
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 124/290 (42%), Gaps = 3/290 (1%)
Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
I+Y+ + K LD+A+ + +M + G T+S+LI + A + +
Sbjct: 675 IVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSK 734
Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
M C P+ + Y+ MID + G + A+ L + + + ++ +I +G G
Sbjct: 735 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGK 794
Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
+ CL + E M + GV PN +TY L+D + + +EM + Y
Sbjct: 795 IETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRK 854
Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
++ + + ++L + E+ + +++Y L+ + A + E++ +
Sbjct: 855 VIEGFNKEFI--ESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFS 912
Query: 406 NCQPD-SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
D S T++S+I KV A +F+EM + G P + SLI+
Sbjct: 913 ATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIK 962
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 39/225 (17%)
Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
V++Y + K D+A +L M ++G +P+ VT++ +I M +E E
Sbjct: 744 VVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLE 803
Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
RM S G P+ +TY +ID + G +++A L + + W + +I+ G
Sbjct: 804 RMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIE--GFNK 861
Query: 285 NFDGCLNVYEEMKAIGVKP----------NMI---------------------------T 307
F L + +E+ P N+I T
Sbjct: 862 EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSST 921
Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 352
YN+L++++ A + ++ EMT G+ P ++ SL++ R
Sbjct: 922 YNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFR 966
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/446 (19%), Positives = 159/446 (35%), Gaps = 87/446 (19%)
Query: 117 DDVFS-----VLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVT 171
DDVF LR + E + +L + P + ++ +YN
Sbjct: 112 DDVFGRKSQKFLRQFREKLSESLVIEVLRLIARPSAVISFFVWAGRQIGYKHTAPVYNAL 171
Query: 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK----AVEWFERMP 227
+ + + D E++ ++ L + D F ++ + N A+E R+
Sbjct: 172 VDLIVR----DDDEKVPEEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLK 227
Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMA----------------FGL----YDRARNEKWR 267
F P TY+ +I A+ +A ++ A F L Y + KWR
Sbjct: 228 DFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWR 287
Query: 268 ------------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315
D ++ LI A F+ ++ M+A PN++TY+ LL
Sbjct: 288 EALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC 347
Query: 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 375
K+ + K + M G P+ + SL+ AY + + ++M + G
Sbjct: 348 LNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGY 407
Query: 376 TLYNTLL-AMCAD----------------------------------------VGYTDEA 394
+YN L+ ++C D G ++A
Sbjct: 408 VVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKA 467
Query: 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454
F + +M + PD+ T+S ++ K+ A +F EM G +++ T ++
Sbjct: 468 FSVIREM-IGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVD 526
Query: 455 CYGKAQRTDDVVRALNRLPELGITPD 480
+ KA + + N + E+G TP+
Sbjct: 527 SFCKAGLIEQARKWFNEMREVGCTPN 552
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 145/313 (46%), Gaps = 2/313 (0%)
Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
YN M +D AER+F+ M +KPD VT++T+I KA+E M
Sbjct: 225 YNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDME 284
Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
+ G + D +TY +MI A + LY + ++ P+AFS +I G +
Sbjct: 285 TRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLN 344
Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
V+E M G KPN+ Y L+D ++ + M D G P+ TY+ ++
Sbjct: 345 EGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 404
Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
+ E+ L + + G+ ++ Y++L+ G DEA +FE+M S + C
Sbjct: 405 NGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEM-SEKGC 463
Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEM-LEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466
DS+ ++++I + KV EA A+F M E G + ++ T L+ K R ++ +
Sbjct: 464 TRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEAL 523
Query: 467 RALNRLPELGITP 479
+ + + + GITP
Sbjct: 524 KLWDMMIDKGITP 536
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 165/361 (45%), Gaps = 28/361 (7%)
Query: 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297
Y S++D A +V+ + + ++ + +A + LIK +G G + L V+ +MK
Sbjct: 155 YVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMK 214
Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
G++P + TYN L++ + A + +++ M + P+ TY ++++ Y +A +
Sbjct: 215 ENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQ 274
Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF----EIFEDMKSSENCQPDSWT 413
+ R+M+ +G + Y T++ C Y D F ++++M + Q
Sbjct: 275 KAMEKLRDMETRGHEADKITYMTMIQAC----YADSDFGSCVALYQEM-DEKGIQVPPHA 329
Query: 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473
FS +I GK++E +F M+ G +PN+ + T LI Y K+ +D +R L+R+
Sbjct: 330 FSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 389
Query: 474 ELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL--GYVVKLLLEEQDIEGDFK 531
+ G PD ++N + + G++ E ++ ++ G + + I+G K
Sbjct: 390 DEGFKPDVVTYSVVVNGLCKN-----GRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGK 444
Query: 532 K----EATELFNSISKD--VKKAYC-NCLIDLCVNLNLLENACKLL-----ELGLTLEVY 579
EA LF +S+ + +YC N LID ++ A L E G VY
Sbjct: 445 AGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVY 504
Query: 580 T 580
T
Sbjct: 505 T 505
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 21/165 (12%)
Query: 174 VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDP 233
+F++ R+ ++A +L+D M+D+G+ P F L + ++ +A + + + G
Sbjct: 513 MFKEHRN-EEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGVIL 571
Query: 234 DALTYSSMIDAYGRAGNV----EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289
DA MI+ +AG + ++A G+ +R R RI + L K+ G D
Sbjct: 572 DAAC-EDMINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKV----GKADLA 626
Query: 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334
+ + IG + MG KR + T+ + D+
Sbjct: 627 MKLMHSKIGIG-----------YERMGSVKRRVKFTTLLETCFDS 660
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 146/320 (45%), Gaps = 4/320 (1%)
Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
A +VI YNV + + K +++ A + D M V PD VT++T++ + +A+
Sbjct: 168 AVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAM 224
Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
E +RM C PD +TY+ +I+A R V A L D R+ D ++ L+
Sbjct: 225 EVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGI 284
Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
G D + +M + G +PN+IT+N +L +M R + + +M G SP+
Sbjct: 285 CKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSV 344
Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
T+ L+ R + + +M + G Q + YN LL D A E E
Sbjct: 345 VTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404
Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460
M S C PD T+++M+T GKV +A + N++ G P L ++I KA
Sbjct: 405 M-VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 463
Query: 461 RTDDVVRALNRLPELGITPD 480
+T ++ L+ + + PD
Sbjct: 464 KTGKAIKLLDEMRAKDLKPD 483
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 158/360 (43%), Gaps = 36/360 (10%)
Query: 157 NKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216
+++ S +V+ YN ++ L +A + D ML R PD +T++ LI ++
Sbjct: 196 DRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGV 255
Query: 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG-------------------- 256
A++ + M GC PD +TY+ +++ + G ++ A
Sbjct: 256 GHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNII 315
Query: 257 LYDRARNEKWR-------------IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
L +W P+ F+ LI G +++ E+M G
Sbjct: 316 LRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGC 375
Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
+PN ++YN LL + K+ + + M G P+ TY ++L A + ED +
Sbjct: 376 QPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVE 435
Query: 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421
+ ++ KG + YNT++ A G T +A ++ ++M+ +++ +PD+ T+SS++
Sbjct: 436 ILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMR-AKDLKPDTITYSSLVGGL 494
Query: 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481
S GKV EA F+E G PN S++ K+++TD + L + G P++
Sbjct: 495 SREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNE 554
Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 132/278 (47%), Gaps = 1/278 (0%)
Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
VI +N+ ++ AE+L DML +G P VTF+ LI+ L +A++ E
Sbjct: 309 VITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILE 368
Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
+MP GC P++L+Y+ ++ + + ++ A +R + D ++T++ G
Sbjct: 369 KMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDG 428
Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
+ + + ++ + G P +ITYN ++D + +A + + + EM L P+ TY+
Sbjct: 429 KVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYS 488
Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
SL+ R ++ + + E + G++ + +N+++ TD A + M +
Sbjct: 489 SLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFM-IN 547
Query: 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
C+P+ +++ +I + G EA + NE+ G
Sbjct: 548 RGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGL 585
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 131/303 (43%), Gaps = 8/303 (2%)
Query: 180 DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239
+L++ + ++M+ G PD + +TLI KA + E + G PD +TY+
Sbjct: 117 ELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYN 176
Query: 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMK 297
MI Y +AG + A + DR + P+ ++T+++ +G + V + M
Sbjct: 177 VMISGYCKAGEINNALSVLDR-----MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRML 231
Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
P++ITY L++ R + EM D G +P+ TY L+ + +
Sbjct: 232 QRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLD 291
Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
+ + +M G Q +V +N +L G +A ++ DM + P TF+ +
Sbjct: 292 EAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADML-RKGFSPSVVTFNIL 350
Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
I +G + A + +M + G +PN L+ + K ++ D + L R+ G
Sbjct: 351 INFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGC 410
Query: 478 TPD 480
PD
Sbjct: 411 YPD 413
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 121 SVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRD 180
++L L D +D V ILN +++ + + +T YN + K
Sbjct: 419 TMLTALCKDGKVEDAVEILNQLSSKGCSPVLIT--------------YNTVIDGLAKAGK 464
Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
KA +L D+M + +KPD +T+S+L+ ++A+++F G P+A+T++S
Sbjct: 465 TGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNS 524
Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
++ ++ + A N + + +++ LI+
Sbjct: 525 IMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIE 562
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 4/175 (2%)
Query: 306 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365
+ NN L M R + + M +G P+ +L+R + R +
Sbjct: 103 VESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEI 162
Query: 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425
++ G V YN +++ G + A + + M S PD T+++++ G
Sbjct: 163 LEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS----PDVVTYNTILRSLCDSG 218
Query: 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
K+ +A + + ML+ P++ T LI+ + ++ L+ + + G TPD
Sbjct: 219 KLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPD 273
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 126 bits (317), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 164/356 (46%), Gaps = 5/356 (1%)
Query: 135 CVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
C+I L + AL ++ + + Y++ + F K +D A +F+DM+
Sbjct: 489 CLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKE 548
Query: 195 GVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVE 252
G+KPD + ++ +IS C M N+ ++A++ + M P T+ +I Y ++G++
Sbjct: 549 GMKPDVILYNNIISAFCG-MGNM-DRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMR 606
Query: 253 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312
+ ++D R + F+ LI + + + +EM GV N TY ++
Sbjct: 607 RSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIM 666
Query: 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372
+ + + + GL + TY +LL+A ++ + L+V +EM + +
Sbjct: 667 QGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIP 726
Query: 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432
+ +YN L+ A G EA ++ + MK E +PD T++S I+ CS G ++ A
Sbjct: 727 RNSFVYNILIDGWARRGDVWEAADLIQQMKK-EGVKPDIHTYTSFISACSKAGDMNRATQ 785
Query: 433 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488
EM G +PN+ T+LI+ + +A + + + +GI PD CLL
Sbjct: 786 TIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLL 841
Score = 112 bits (281), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 157/374 (41%), Gaps = 10/374 (2%)
Query: 93 KSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALAL 152
K+Y N VKL ++ + ED V ++ D L + + M N D A +
Sbjct: 520 KTYSMMINGFVKLKDWANAFAVFEDMVKEGMKP--DVILYNNIISAFCGMGNMDRAIQTV 577
Query: 153 TYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARM 212
KL+ + + + K D+ ++ +FD M G P TF+ LI+
Sbjct: 578 KEM-QKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVE 636
Query: 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNA 272
KAVE + M G + TY+ ++ Y G+ AF + R +NE +D
Sbjct: 637 KRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFT 696
Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
+ L+K +G L V +EM A + N YN L+D R W+ + ++M
Sbjct: 697 YEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK 756
Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
G+ P+ +TY S + A +A EM+ G++ ++ Y TL+ A +
Sbjct: 757 KEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPE 816
Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA------EAMFNEMLEAGFEPNL 446
+A +E+MK+ +PD + ++T R ++EA + EM+EAG ++
Sbjct: 817 KALSCYEEMKAM-GIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDM 875
Query: 447 FVLTSLIQCYGKAQ 460
+C K +
Sbjct: 876 GTAVHWSKCLCKIE 889
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/350 (22%), Positives = 153/350 (43%), Gaps = 12/350 (3%)
Query: 143 TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVT 202
TN D ++ F K S+ + + +K + + D+ +A F+ M RG+ P +
Sbjct: 289 TNGDNWQAVISAFEKISKPSR--TEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRI 346
Query: 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262
+++LI + ++A+ +M G + +TYS ++ + +AG+ E A +D A+
Sbjct: 347 YTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAK 406
Query: 263 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 322
++ + + +I + N + + EM+ G+ + Y+ ++D
Sbjct: 407 RIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEK 466
Query: 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382
+ ++K + + G +P TY L+ Y + L V R MKE+G++ ++ Y+ ++
Sbjct: 467 KGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMI 526
Query: 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442
+ AF +FEDM E +PD ++++I+ G + A EM +
Sbjct: 527 NGFVKLKDWANAFAVFEDM-VKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRH 585
Query: 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492
P +I Y K + D+ R+L + R CGC+ V T
Sbjct: 586 RPTTRTFMPIIHGYAK---SGDMRRSLEVFDMM------RRCGCVPTVHT 626
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/404 (20%), Positives = 164/404 (40%), Gaps = 41/404 (10%)
Query: 117 DDVFSVLRCLGDDFLEQDCV---IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMK 173
D+ S +R + ++ +E V +I+ + A A +F + K +
Sbjct: 361 DEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKI 420
Query: 174 VFRKCR--DLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGC 231
++ C+ ++++AE L +M + G+ + T++ M K + F+R+ G
Sbjct: 421 IYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGF 480
Query: 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291
P +TY +I+ Y + G + A + + E + + +S +I + ++
Sbjct: 481 TPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFA 540
Query: 292 VYEEMKAIGVKPNMITYNNLLDT---MGRAKRPWQ-VKT--------------------- 326
V+E+M G+KP++I YNN++ MG R Q VK
Sbjct: 541 VFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYA 600
Query: 327 ----------IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
++ M G P +T+ L+ R E + + EM G+ +
Sbjct: 601 KSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEH 660
Query: 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436
Y ++ A VG T +AFE F ++ +E D +T+ +++ C G++ A A+ E
Sbjct: 661 TYTKIMQGYASVGDTGKAFEYFTRLQ-NEGLDVDIFTYEALLKACCKSGRMQSALAVTKE 719
Query: 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
M N FV LI + + + + ++ + G+ PD
Sbjct: 720 MSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPD 763
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 171/365 (46%), Gaps = 26/365 (7%)
Query: 91 KEKSYDTRYNSLVKLAADLDSCSATEDDVF-SVLRCLGDDFLEQDCVIILNNMTNPDTAA 149
+ ++ + N L + + C +D F S++R G+ L Q+ V + M
Sbjct: 112 RARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTM------- 164
Query: 150 LALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLIS 208
++ S V+ +N + + K A LFD+M GV PD+ TF+TLI+
Sbjct: 165 -------KQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLIN 217
Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
N++ ++A F+ M + C+PD +TY+++ID RAG V++A + + +
Sbjct: 218 GFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDV 277
Query: 269 DPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326
PN +++TL++ Y D + V+ +M + G+KPN +TYN L+ + A R ++K
Sbjct: 278 HPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKD 337
Query: 327 IYKEMTD--NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384
I D +P+ T+ L++A+ A + + + V++EM + Y+ L+
Sbjct: 338 ILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRT 397
Query: 385 CADVGYTDEAFEIFEDMKSSE------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438
D A +F ++ E C+P + ++ M GK +AE +F +++
Sbjct: 398 LCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLM 457
Query: 439 EAGFE 443
+ G +
Sbjct: 458 KRGVQ 462
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 137/270 (50%), Gaps = 5/270 (1%)
Query: 201 VTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL--- 257
++ +T++ R+ +P + +F+ + + G ++ M++ GRA N+ +A
Sbjct: 66 ISRTTVLQTLRLIKVPADGLRFFDWVSNKGFSHKEQSFFLMLEFLGRARNLNVARNFLFS 125
Query: 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317
+R N ++ F++LI+ YG AG F + +++ MK +G+ P+++T+N+LL + +
Sbjct: 126 IERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLK 185
Query: 318 AKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376
R ++ EM G++P+ T+ +L+ + + ++ ++++M+ V
Sbjct: 186 RGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVV 245
Query: 377 LYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435
YNT++ G A + M K + + P+ ++++++ + ++ EA +F+
Sbjct: 246 TYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFH 305
Query: 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
+ML G +PN +LI+ +A R D++
Sbjct: 306 DMLSRGLKPNAVTYNTLIKGLSEAHRYDEI 335
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 139/300 (46%), Gaps = 10/300 (3%)
Query: 154 YFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG---VKPDNVTFSTLISCA 210
+ +NK + KE + + ++ + R+L+ A + R VK + F++LI
Sbjct: 90 WVSNKGFSHKEQSFF-LMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSY 148
Query: 211 RMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP 270
L ++V+ F+ M G P LT++S++ + G MA L+D R + + P
Sbjct: 149 GNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMR-RTYGVTP 207
Query: 271 NA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
++ F+TLI + D ++++M+ P+++TYN ++D + RA + +
Sbjct: 208 DSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVL 267
Query: 329 KEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
M + PN +Y +L+R Y + ++ + V+ +M +G++ + YNTL+ +
Sbjct: 268 SGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLS 327
Query: 387 DVGYTDEAFEIFEDMKSS-ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
+ DE +I + PD+ TF+ +I G + A +F EML P+
Sbjct: 328 EAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPD 387
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 143/351 (40%), Gaps = 48/351 (13%)
Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV----EWF 223
+N+ +K LD A ++F +ML+ + PD+ ++S LI M N ++A E F
Sbjct: 356 FNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELF 415
Query: 224 ERMPSFG---CDPDALTYSSMID---AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 277
E+ G C P A Y+ M + A G+ E F R ++ DP ++ TLI
Sbjct: 416 EKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVF----RQLMKRGVQDPPSYKTLI 471
Query: 278 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 337
+ G F + M P++ TY L+D + + + M +
Sbjct: 472 TGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTLQRMLRSSYL 531
Query: 338 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397
P T+ S+L + ++ ++ + M EK ++ ++ L ++ + ++AF I
Sbjct: 532 PVATTFHSVLAELAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVRLLFSSAQKEKAFLI 591
Query: 398 FEDMKSS--------------ENCQ-PDSWTF-------SSMITICSCRGKV-------- 427
+ + EN + D+ T S M+ I +C +
Sbjct: 592 VRLLYDNGYLVKMEELLGYLCENRKLLDAHTLVLFCLEKSQMVDIDTCNTVIEGLCKHKR 651
Query: 428 -SEAEAMFNEMLEAGFEPNL---FVLTSLIQCYGKAQRTDDVVRALNRLPE 474
SEA +++NE++E G L VL + ++ GK + V + + L E
Sbjct: 652 HSEAFSLYNELVELGNHQQLSCHVVLRNALEAAGKWEELQFVSKRMATLRE 702
>sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490,
mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2
SV=1
Length = 836
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 121/535 (22%), Positives = 237/535 (44%), Gaps = 47/535 (8%)
Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
YN ++ K L+ A F + G K D T++ L+ LP KA E +E M
Sbjct: 246 YNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESME 305
Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
D TY +I + ++G ++ AF L+ + + K R + FS+L+ G AG D
Sbjct: 306 KTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLD 365
Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
+ VY EM+ G +P+ + +L+D+ +A + ++ EM +G PN+ Y ++
Sbjct: 366 TSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMII 425
Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
++ ++ E ++V+++M++ G + + Y+ LL M A G D A +I+ M ++
Sbjct: 426 ESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSM-TNAGL 484
Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
+P ++ S++T+ + + V A + EM G+ ++ + ++ Y K D ++
Sbjct: 485 RPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDV-CASDVLMIYIKDASVDLALK 543
Query: 468 ALNRLPELGITPDD-----RFCGCLLNVMTQTPKEELGKLVECVEKSN-----SKLGYVV 517
L + GI ++ F C+ N + + + L LV K + S L ++V
Sbjct: 544 WLRFMGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKVDLVLYTSILAHLV 603
Query: 518 KLLLEEQDIE-----------------GDF-----KKEAT-----ELFNSISKDVKKA-- 548
+ E+++ + G F +K+ E + I ++++
Sbjct: 604 RCQDEDKERQLMSILSATKHKAHAFMCGLFTGPEQRKQPVLTFVREFYQGIDYELEEGAA 663
Query: 549 --YCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTA 605
+ N L++ V + + A + ++ +++ I WSL +++LS+GAAL A
Sbjct: 664 RYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIA 723
Query: 606 LHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASV---FESHLKELNAP 657
+ ++ K + P + + TG + L+SV FE L AP
Sbjct: 724 VVHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVLRAP 778
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 109/220 (49%), Gaps = 1/220 (0%)
Query: 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330
NA++ +I+ A + +++ + G K + TYNNL+ P++ IY+
Sbjct: 244 NAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYES 303
Query: 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390
M + +TY ++ + ++ + ++++MKE+ ++ S +++++L+ G
Sbjct: 304 MEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGR 363
Query: 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450
D + +++ +M+ + +P + F S+I + GK+ A +++EM ++GF PN + T
Sbjct: 364 LDTSMKVYMEMQGFGH-RPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYT 422
Query: 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490
+I+ + K+ + + + + + G P CLL +
Sbjct: 423 MIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEM 462
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 126/273 (46%), Gaps = 16/273 (5%)
Query: 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP---NWNTYASLLRAYGRARYGEDTLSVYR 364
Y L D + + + ++++++EM + S ++N Y +++ +A E ++
Sbjct: 208 YVVLFDGLNQGRDFVGIQSLFEEMVQDSSSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFK 267
Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
+ +E G ++ YN L+ + + G +AFEI+E M+ +++ D T+ +I +
Sbjct: 268 KAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLL-DGSTYELIIPSLAKS 326
Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 484
G++ A +F +M E P+ V +SL+ GKA R D ++ + G P
Sbjct: 327 GRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMF 386
Query: 485 GCLLNVMTQTPKEELG-KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543
L++ + K + +L + ++KS G+ L IE K E+ ++ K
Sbjct: 387 VSLIDSYAKAGKLDTALRLWDEMKKS----GFRPNFGLYTMIIESHAKSGKLEVAMTVFK 442
Query: 544 DVKKA-------YCNCLIDLCVNLNLLENACKL 569
D++KA +CL+++ +++A K+
Sbjct: 443 DMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 475
Score = 36.2 bits (82), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 1/148 (0%)
Query: 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERM 226
LY + ++ K L+ A +F DM G P T+S L+ + + A++ + M
Sbjct: 420 LYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSM 479
Query: 227 PSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286
+ G P +Y S++ V++A + + + +D A S ++ +Y +
Sbjct: 480 TNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDVCA-SDVLMIYIKDASV 538
Query: 287 DGCLNVYEEMKAIGVKPNMITYNNLLDT 314
D L M + G+K N L ++
Sbjct: 539 DLALKWLRFMGSSGIKTNNFIIRQLFES 566
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 177/384 (46%), Gaps = 46/384 (11%)
Query: 138 ILNNMTNPDTAALALTYFTN----KLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLD 193
+LN + +ALAL F +KAS V+ Y++ + K D A LF++M
Sbjct: 216 VLNRLCKSGNSALALDLFRKMEERNIKAS--VVQYSIVIDSLCKDGSFDDALSLFNEMEM 273
Query: 194 RGVKPDNVTFSTLIS--C--------ARM-------NNLPN------------------K 218
+G+K D VT+S+LI C A+M N +P+ +
Sbjct: 274 KGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLE 333
Query: 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 278
A E + M + G PD +TY+S+ID + + + A ++D ++ D +S LI
Sbjct: 334 AKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILIN 393
Query: 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 338
Y A D + ++ E+ + G+ PN ITYN L+ ++ + K +++EM G+ P
Sbjct: 394 SYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPP 453
Query: 339 NWNTYASLLRAYGRARYGE--DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396
+ TY LL G GE L ++ +M++ M L + +YN ++ + D+A+
Sbjct: 454 SVVTYGILLD--GLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWS 511
Query: 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456
+F + S + +PD T++ MI +G +SEA+ +F +M E G P+ F LI+ +
Sbjct: 512 LFCSL-SDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAH 570
Query: 457 GKAQRTDDVVRALNRLPELGITPD 480
V + + G + D
Sbjct: 571 LGGSGLISSVELIEEMKVCGFSAD 594
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 157/329 (47%), Gaps = 5/329 (1%)
Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
+ +A L D M++ +PD VT STLI+ + ++A+ +RM +G PD +TY
Sbjct: 156 VSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGP 215
Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
+++ ++GN +A L+ + + +S +I G+FD L+++ EM+ G
Sbjct: 216 VLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKG 275
Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
+K +++TY++L+ + + + +EM + P+ T+++L+ + + +
Sbjct: 276 IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAK 335
Query: 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420
+Y EM +G+ YN+L+ EA ++F D+ S+ C+PD T+S +I
Sbjct: 336 ELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMF-DLMVSKGCEPDIVTYSILIN- 393
Query: 421 CSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
C+ K V + +F E+ G PN +L+ + ++ + + + G+ P
Sbjct: 394 SYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPP 453
Query: 480 DDRFCGCLLNVMTQTPKEELGKLVECVEK 508
G LL+ + EL K +E EK
Sbjct: 454 SVVTYGILLDGLCDNG--ELNKALEIFEK 480
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 140/313 (44%), Gaps = 11/313 (3%)
Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
++ A LF+ M+ P + F+ L S + + + + M G + D T +
Sbjct: 51 VNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTI 110
Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
MI+ Y R + AF + RA + D FSTL+ + G + + + M +
Sbjct: 111 MINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMK 170
Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 360
+P+++T + L++ + R + + M + G P+ TY +L ++ L
Sbjct: 171 QRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALAL 230
Query: 361 SVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419
++R+M+E+ ++ SV Y+ ++ ++C D G D+A +F +M+ + + D T+SS+I
Sbjct: 231 DLFRKMEERNIKASVVQYSIVIDSLCKD-GSFDDALSLFNEME-MKGIKADVVTYSSLIG 288
Query: 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479
GK + M EM+ P++ ++LI + K + + N + GI P
Sbjct: 289 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAP 348
Query: 480 D--------DRFC 484
D D FC
Sbjct: 349 DTITYNSLIDGFC 361
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 154/311 (49%), Gaps = 3/311 (0%)
Query: 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFS 204
PD A L L K K +V++YN + K + +D A LF+ M +G+KPD T++
Sbjct: 231 PDLA-LNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYN 289
Query: 205 TLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE 264
LISC + A M +PD + ++++IDA+ + G + A LYD
Sbjct: 290 PLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKS 349
Query: 265 KWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323
K D A++TLIK + + + V+ EM G+ N +TY L+ +A+
Sbjct: 350 KHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDN 409
Query: 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 383
+ ++K+M +G+ P+ TY LL E L V+ M+++ M+L + Y T++
Sbjct: 410 AQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIE 469
Query: 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443
G ++ +++F + S + +P+ T+++M++ +G EA+A+F EM E G
Sbjct: 470 ALCKAGKVEDGWDLFCSL-SLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPL 528
Query: 444 PNLFVLTSLIQ 454
PN +LI+
Sbjct: 529 PNSGTYNTLIR 539
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/400 (25%), Positives = 176/400 (44%), Gaps = 37/400 (9%)
Query: 149 ALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS 208
ALA+ KL ++ N + F + +A L D M++ G +PD VTF+TL+
Sbjct: 129 ALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVH 188
Query: 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI 268
+N ++AV ERM GC PD +TY ++I+ + G ++A L ++ K
Sbjct: 189 GLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEA 248
Query: 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 328
D ++T+I + D +++ +M+ G+KP++ TYN L+
Sbjct: 249 DVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLI---------------- 292
Query: 329 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388
S L YGR D + +M EK + + +N L+
Sbjct: 293 ----------------SCLCNYGRW---SDASRLLSDMLEKNINPDLVFFNALIDAFVKE 333
Query: 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448
G EA +++++M S++C PD ++++I +V E +F EM + G N
Sbjct: 334 GKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 393
Query: 449 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV-ECVE 507
T+LI + +A+ D+ ++ G+ PD LL+ + E +V E ++
Sbjct: 394 YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQ 453
Query: 508 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVK 546
K + KL V + E + ++ +LF S+S K VK
Sbjct: 454 KRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVK 493
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 121/234 (51%), Gaps = 5/234 (2%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+V+ YN +K F K + +++ +F +M RG+ + VT++TLI + A F
Sbjct: 355 DVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 414
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
++M S G PD +TY+ ++D GNVE A +++ + ++D ++T+I+ A
Sbjct: 415 KQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKA 474
Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
G + +++ + GVKPN++TY ++ R + ++ EM ++G PN TY
Sbjct: 475 GKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTY 534
Query: 344 ASLLRAYGRARYGEDTLS--VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
+L+RA R R G++ S + +EM+ G + + + M D G D++F
Sbjct: 535 NTLIRA--RLRDGDEAASAELIKEMRSCGFAGDASTFGLVTNMLHD-GRLDKSF 585
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 152/315 (48%), Gaps = 11/315 (3%)
Query: 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMP 227
N++ KV + + LD A LF DM+ P V FS L+S A+MN + + E+M
Sbjct: 45 NLSRKVLQDLK-LDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKF-DLVISLGEQMQ 102
Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
+ G + TYS I+ + R + +A + + + ++L+ +
Sbjct: 103 NLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRIS 162
Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
+ + ++M +G +P+ +T+ L+ + + + + + + M G P+ TY +++
Sbjct: 163 EAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVI 222
Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407
+ + L++ +M++ ++ V +YNT++ + D+AF++F M+ ++
Sbjct: 223 NGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKME-TKGI 281
Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT----- 462
+PD +T++ +I+ G+ S+A + ++MLE P+L +LI + K +
Sbjct: 282 KPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEK 341
Query: 463 --DDVVRALNRLPEL 475
D++V++ + P++
Sbjct: 342 LYDEMVKSKHCFPDV 356
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 134/318 (42%), Gaps = 13/318 (4%)
Query: 273 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 332
FS L+ FD +++ E+M+ +G+ N+ TY+ ++ R + I +M
Sbjct: 78 FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMM 137
Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
G P+ T SLL + + +++ +M E G Q + TL+
Sbjct: 138 KLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKAS 197
Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
EA + E M + CQPD T+ ++I RG+ A + N+M + E ++ + ++
Sbjct: 198 EAVALVERM-VVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTI 256
Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPD----DRFCGCLLNVMTQTPKEELGKLVECVEK 508
I K + DD N++ GI PD + CL N + L L + +EK
Sbjct: 257 IDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRL--LSDMLEK 314
Query: 509 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 568
+ + L++ EG EA +L++ + K +C D+ L++ CK
Sbjct: 315 NINPDLVFFNALIDAFVKEGKL-VEAEKLYDEMVKSK-----HCFPDVVAYNTLIKGFCK 368
Query: 569 LLELGLTLEVYTDIQSRS 586
+ +EV+ ++ R
Sbjct: 369 YKRVEEGMEVFREMSQRG 386
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 2/145 (1%)
Query: 137 IILNNMTNPDTAALALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
I+L+ + N AL F K +++ Y ++ K ++ LF + +
Sbjct: 431 ILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLK 490
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
GVKP+ VT++T++S L +A F M G P++ TY+++I A R G+ +
Sbjct: 491 GVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAAS 550
Query: 255 FGLYDRARNEKWRIDPNAFSTLIKL 279
L R+ + D + F + +
Sbjct: 551 AELIKEMRSCGFAGDASTFGLVTNM 575
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 149/312 (47%), Gaps = 8/312 (2%)
Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
+I YN+ + F D +L DM+ R + P+ VTFS LI +A E +
Sbjct: 298 IITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHK 357
Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGT 282
M G PD +TY+S+ID + + +++ A + D ++ DPN F+ LI Y
Sbjct: 358 EMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGC--DPNIRTFNILINGYCK 415
Query: 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 342
A D L ++ +M GV + +TYN L+ + K +++EM + PN T
Sbjct: 416 ANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVT 475
Query: 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402
Y LL E L ++ ++++ M+L + +YN ++ + D+A+++F +
Sbjct: 476 YKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL- 534
Query: 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKA 459
+ +P T++ MI +G +SEAE +F +M E G P+ + LI+ + G A
Sbjct: 535 PLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDA 594
Query: 460 QRTDDVVRALNR 471
++ ++ L R
Sbjct: 595 TKSVKLIEELKR 606
Score = 109 bits (273), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 137/303 (45%), Gaps = 42/303 (13%)
Query: 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240
+ +A L D M++ G KPD +T +TL++ ++ +A+ ++M +GC P+A+TY
Sbjct: 174 VSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGP 233
Query: 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300
+++ ++G +A L + ++D +S +I G+ D N++ EM+ G
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 293
Query: 301 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGE 357
+ N+ITYN L+ A R + ++M ++PN T++ L+ ++ G+ R E
Sbjct: 294 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 353
Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
+ +++EM +G+ PD+ T++S+
Sbjct: 354 E---LHKEMIHRGI------------------------------------APDTITYTSL 374
Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
I + +A M + M+ G +PN+ LI Y KA R DD + ++ G+
Sbjct: 375 IDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGV 434
Query: 478 TPD 480
D
Sbjct: 435 VAD 437
Score = 96.3 bits (238), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 138/343 (40%), Gaps = 36/343 (10%)
Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
D A LF DM+ P + FS L S + + ++M G + T S M
Sbjct: 70 DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIM 129
Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
I+ + R + +AF + + + FSTLI G L + + M +G
Sbjct: 130 INCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH 189
Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY----------- 350
KP++IT N L++ + + + + + +M + G PN TY +L
Sbjct: 190 KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAME 249
Query: 351 ----------------------GRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386
G ++G ++ +++ EM+ KG+ ++ YN L+
Sbjct: 250 LLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFC 309
Query: 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
+ G D+ ++ DM P+ TFS +I GK+ EAE + EM+ G P+
Sbjct: 310 NAGRWDDGAKLLRDM-IKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDT 368
Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
TSLI + K D + ++ + G P+ R L+N
Sbjct: 369 ITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILIN 411
Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 103/220 (46%)
Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
+N+ + + K +D LF M RGV D VT++TLI N A E F+ M
Sbjct: 406 FNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMV 465
Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
S P+ +TY ++D G E A ++++ K +D ++ +I A D
Sbjct: 466 SRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVD 525
Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
+++ + GVKP + TYN ++ + + + + ++++M ++G +P+ TY L+
Sbjct: 526 DAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILI 585
Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
RA+ ++ + E+K G + + ++ M +D
Sbjct: 586 RAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSD 625
Score = 40.4 bits (93), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 2/145 (1%)
Query: 137 IILNNMTNPDTAALALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
I+L+ + + + AL F K K ++ +YN+ + +D A LF + +
Sbjct: 478 ILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK 537
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
GVKP T++ +I ++A F +M G PD TY+ +I A+ G+ +
Sbjct: 538 GVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKS 597
Query: 255 FGLYDRARNEKWRIDPNAFSTLIKL 279
L + + + +D + +I +
Sbjct: 598 VKLIEELKRCGFSVDASTIKMVIDM 622
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 165/352 (46%), Gaps = 8/352 (2%)
Query: 131 LEQDCVII---LNNMTNPDTAALALTYFTNKLK--ASKEVILYNVTMKVFRKCRDLDKAE 185
+E C+++ LN + D A+ F L+ + + +N+ ++ +KA
Sbjct: 167 VEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKAL 226
Query: 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG-CDPDALTYSSMIDA 244
L M G +PD VT++TLI +N NKA E F+ + S C PD +TY+SMI
Sbjct: 227 ELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISG 286
Query: 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 304
Y +AG + A L D F+ L+ Y AG + +M + G P+
Sbjct: 287 YCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPD 346
Query: 305 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364
++T+ +L+D R + Q +++EM G+ PN TY+ L+ A +
Sbjct: 347 VVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLG 406
Query: 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424
++ K + +YN ++ G +EA I E+M+ + C+PD TF+ +I +
Sbjct: 407 QLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKK-CKPDKITFTILIIGHCMK 465
Query: 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
G++ EA ++F++M+ G P+ ++SL+ C KA + LN++ G
Sbjct: 466 GRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYH-LNQIARKG 516
Score = 86.3 bits (212), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 160/395 (40%), Gaps = 19/395 (4%)
Query: 102 LVKLAADLDSCSATEDDV-FSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLK 160
LVK+ + L + D+ F L + F+ + V L+N NP + KL
Sbjct: 41 LVKIVSTLFVYRVPDSDLCFCYLSKNLNPFISFEVVKKLDN--NPHIGFRFWEFSRFKLN 98
Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKA 219
YN+ + K D A ++F+ M GV P+N L+S A L
Sbjct: 99 IRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFAT 158
Query: 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279
+ GC + +S+++ + VE A L+D + D F+ LI+
Sbjct: 159 ALLLQSFEVEGC---CMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRG 215
Query: 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SP 338
G + L + M G +P+++TYN L+ ++ + ++K++ + SP
Sbjct: 216 LCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSP 275
Query: 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 398
+ TY S++ Y +A + S+ +M G+ + +N L+ A G A EI
Sbjct: 276 DVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIR 335
Query: 399 EDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457
M S C PD TF+S+I CR G+VS+ ++ EM G PN F + LI
Sbjct: 336 GKMISF-GCFPDVVTFTSLID-GYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALC 393
Query: 458 KAQRTDDVVRALNRLPELGITPD--------DRFC 484
R L +L I P D FC
Sbjct: 394 NENRLLKARELLGQLASKDIIPQPFMYNPVIDGFC 428
Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 86/178 (48%), Gaps = 3/178 (1%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+V+ + + + + + + RL+++M RG+ P+ T+S LI+ N KA E
Sbjct: 346 DVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELL 405
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
++ S P Y+ +ID + +AG V A + + +K + D F+ LI +
Sbjct: 406 GQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMK 465
Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSP 338
G ++++ +M AIG P+ IT ++LL + G AK + + I ++ N + P
Sbjct: 466 GRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIARKGQSNNVVP 523
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 123 bits (308), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 159/340 (46%), Gaps = 6/340 (1%)
Query: 137 IILNNMTNPDTAALALTYFTN-KLKASK-EVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
II++ + + A F ++K K ++I+Y ++ F D +L DM+ R
Sbjct: 252 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR 311
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
+ PD V FS LI C +A E + M G PD +TY+S+ID + + ++ A
Sbjct: 312 KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKA 371
Query: 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314
+ D ++ + F+ LI Y A D L ++ +M GV + +TYN L+
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431
Query: 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374
+ K +++EM + P+ +Y LL E L ++ ++++ M+L
Sbjct: 432 FCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELD 491
Query: 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434
+ +YN ++ + D+A+++F + + +PD T++ MI +G +SEA+ +F
Sbjct: 492 IGIYNIIIHGMCNASKVDDAWDLFCSL-PLKGVKPDVKTYNIMIGGLCKKGSLSEADLLF 550
Query: 435 NEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNR 471
+M E G PN LI+ + G A ++ ++ + R
Sbjct: 551 RKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKR 590
Score = 107 bits (266), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 138/315 (43%), Gaps = 1/315 (0%)
Query: 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFER 225
+ Y +KV K A L M +R +K D V +S +I + + A F
Sbjct: 213 VTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 272
Query: 226 MPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285
M G D + Y+++I + AG + L K D AFS LI + G
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGK 332
Query: 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345
+++EM G+ P+ +TY +L+D + + + + M G PN T+
Sbjct: 333 LREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNI 392
Query: 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405
L+ Y +A +D L ++R+M +G+ YNTL+ ++G + A E+F++M S
Sbjct: 393 LINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEM-VSR 451
Query: 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465
+PD ++ ++ G+ +A +F ++ ++ E ++ + +I A + DD
Sbjct: 452 RVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDA 511
Query: 466 VRALNRLPELGITPD 480
LP G+ PD
Sbjct: 512 WDLFCSLPLKGVKPD 526
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/369 (23%), Positives = 163/369 (44%), Gaps = 4/369 (1%)
Query: 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236
+CR L A ++ G +PD VTFSTLI+ + ++A+E +RM G P +
Sbjct: 119 RCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLI 178
Query: 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296
T +++++ G V A L DR ++ + + ++K+ +G + + +M
Sbjct: 179 TLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKM 238
Query: 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356
+ +K + + Y+ ++D + + ++ EM G + Y +L+R + A
Sbjct: 239 EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298
Query: 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416
+D + R+M ++ + V ++ L+ G EA E+ ++M PD+ T++S
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEM-IQRGISPDTVTYTS 357
Query: 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476
+I ++ +A M + M+ G PN+ LI Y KA DD + ++ G
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRG 417
Query: 477 ITPDDRFCGCLLNVMTQTPKEELGK--LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEA 534
+ D L+ + K E+ K E V + K+LL+ G+ +K A
Sbjct: 418 VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEK-A 476
Query: 535 TELFNSISK 543
E+F I K
Sbjct: 477 LEIFEKIEK 485
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 136/343 (39%), Gaps = 36/343 (10%)
Query: 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241
D A LF +M +P + FS L S + ++ ++M G + T S M
Sbjct: 54 DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113
Query: 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301
I+ R + +AF + + D FSTLI G L + + M +G
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173
Query: 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361
KP +IT N L++ + + + M + G PN TY +L+ ++ +
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAME 233
Query: 362 VYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMK------------------ 402
+ R+M+E+ ++L Y+ ++ +C D G D AF +F +M+
Sbjct: 234 LLRKMEERKIKLDAVKYSIIIDGLCKD-GSLDNAFNLFNEMEIKGFKADIIIYTTLIRGF 292
Query: 403 ----------------SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 446
PD FS++I GK+ EAE + EM++ G P+
Sbjct: 293 CYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDT 352
Query: 447 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489
TSLI + K + D L+ + G P+ R L+N
Sbjct: 353 VTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILIN 395
Score = 82.8 bits (203), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 101/220 (45%)
Query: 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227
+N+ + + K +D LF M RGV D VT++TLI A E F+ M
Sbjct: 390 FNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMV 449
Query: 228 SFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287
S PD ++Y ++D G E A ++++ K +D ++ +I A D
Sbjct: 450 SRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVD 509
Query: 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 347
+++ + GVKP++ TYN ++ + + + ++++M ++G SPN TY L+
Sbjct: 510 DAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILI 569
Query: 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387
RA+ + + E+K G + + ++ M +D
Sbjct: 570 RAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDMLSD 609
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 37/196 (18%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+ + YN ++ F + L+ A+ LF +M+ R V+PD V++ L+ N P KA+E F
Sbjct: 421 DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIF 480
Query: 224 ER-----------------------------------MPSFGCDPDALTYSSMIDAYGRA 248
E+ +P G PD TY+ MI +
Sbjct: 481 EKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKK 540
Query: 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 308
G++ A L+ + + + ++ LI+ + G+ + EE+K G + T
Sbjct: 541 GSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTV 600
Query: 309 NNLLDTM--GRAKRPW 322
++D + GR K+ +
Sbjct: 601 KMVVDMLSDGRLKKSF 616
Score = 40.0 bits (92), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 64/145 (44%), Gaps = 2/145 (1%)
Query: 137 IILNNMTNPDTAALALTYF--TNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194
I+L+ + + AL F K K ++ +YN+ + +D A LF + +
Sbjct: 462 ILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK 521
Query: 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254
GVKPD T++ +I ++A F +M G P+ TY+ +I A+ G+ +
Sbjct: 522 GVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKS 581
Query: 255 FGLYDRARNEKWRIDPNAFSTLIKL 279
L + + + +D + ++ +
Sbjct: 582 AKLIEEIKRCGFSVDASTVKMVVDM 606
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 122 bits (307), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 148/307 (48%), Gaps = 1/307 (0%)
Query: 187 LFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246
+++ +D GVK + T S L++ KA E R + G P+ + Y++MID Y
Sbjct: 341 VYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYC 400
Query: 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306
R G++ A + + + D A++ LI+ + G + +MK GV P++
Sbjct: 401 RKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVE 460
Query: 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366
TYN L+ GR + I KEM DNG PN +Y +L+ + + V R+M
Sbjct: 461 TYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDM 520
Query: 367 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426
+++G+ V +YN L+ C G ++AF ++M + + + T++++I S GK
Sbjct: 521 EDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEM-LKKGIELNLVTYNTLIDGLSMTGK 579
Query: 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 486
+SEAE + E+ G +P++F SLI YG A + + GI P +
Sbjct: 580 LSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHL 639
Query: 487 LLNVMTQ 493
L+++ T+
Sbjct: 640 LISLCTK 646
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 168/388 (43%), Gaps = 17/388 (4%)
Query: 118 DVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKAS--KEVILYNVTMKVF 175
D+F LR G ++L+++ + + F N L++ +Y ++
Sbjct: 130 DLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAA 189
Query: 176 RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
K D+ K LF+ M + P ++ LI N A + F+ M + P
Sbjct: 190 VKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSL 249
Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295
+TY+++ID Y +AGN E +F + +R + + F+TL+K AG + NV +E
Sbjct: 250 ITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKE 309
Query: 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GR 352
MK +G P+ T++ L D ++ +Y+ D+G+ N T + LL A G+
Sbjct: 310 MKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGK 369
Query: 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK----SSENCQ 408
E+ L REM KG+ + +YNT++ GY + + MK + +
Sbjct: 370 IEKAEEILG--REMA-KGLVPNEVIYNTMID-----GYCRKGDLVGARMKIEAMEKQGMK 421
Query: 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 468
PD ++ +I G++ AE N+M G P++ LI YG+ D
Sbjct: 422 PDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDI 481
Query: 469 LNRLPELGITPDDRFCGCLLNVMTQTPK 496
L + + G P+ G L+N + + K
Sbjct: 482 LKEMEDNGTMPNVVSYGTLINCLCKGSK 509
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 132/279 (47%), Gaps = 7/279 (2%)
Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
V+ Y + K L +A+ + DM DRGV P ++ LI A + +
Sbjct: 494 VVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSK 553
Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
M G + + +TY+++ID G + A L + + D +++LI YG AG
Sbjct: 554 EMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAG 613
Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344
N C+ +YEEMK G+KP + TY +LL ++ + + ++ EM+ L P+ Y
Sbjct: 614 NVQRCIALYEEMKRSGIKPTLKTY-HLLISLCTKEGIELTERLFGEMS---LKPDLLVYN 669
Query: 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404
+L Y E ++ ++M EK + L T YN+L+ VG E + ++M +
Sbjct: 670 GVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAR 729
Query: 405 ENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGF 442
E +P++ T++ ++ C + +S A + EM E GF
Sbjct: 730 E-MEPEADTYNIIVKGHCEVKDYMS-AYVWYREMQEKGF 766
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 104/245 (42%), Gaps = 1/245 (0%)
Query: 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313
A L+ RNE ++ + L+ F +NV+ + +P+ Y +
Sbjct: 128 AADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQ 187
Query: 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373
+ + ++ M + + P+ Y L+ + + D ++ EM + +
Sbjct: 188 AAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLP 247
Query: 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433
S+ YNTL+ G +++F++ E MK +++ +P TF++++ G V +AE +
Sbjct: 248 SLITYNTLIDGYCKAGNPEKSFKVRERMK-ADHIEPSLITFNTLLKGLFKAGMVEDAENV 306
Query: 434 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493
EM + GF P+ F + L Y ++ + + + G+ + C LLN + +
Sbjct: 307 LKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCK 366
Query: 494 TPKEE 498
K E
Sbjct: 367 EGKIE 371
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 122 bits (306), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 152/302 (50%), Gaps = 11/302 (3%)
Query: 184 AERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243
E ++ +M+ R ++P+ TF+ +I+ NKA + E M +GC P+ ++Y+++ID
Sbjct: 207 VEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLID 266
Query: 244 AYGR-AGNVEMAFG---LYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMK 297
Y + GN +M L + N+ + PN F+ LI + N G + V++EM
Sbjct: 267 GYCKLGGNGKMYKADAVLKEMVEND---VSPNLTTFNILIDGFWKDDNLPGSMKVFKEML 323
Query: 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 357
VKPN+I+YN+L++ + + + ++ +M G+ PN TY +L+ + + +
Sbjct: 324 DQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLK 383
Query: 358 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417
+ L ++ +K +G + +YN L+ +G D+ F + E+M+ E PD T++ +
Sbjct: 384 EALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEME-REGIVPDVGTYNCL 442
Query: 418 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477
I G + A+ +F+++ G P+L L++ Y + + L + ++G+
Sbjct: 443 IAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGL 501
Query: 478 TP 479
P
Sbjct: 502 KP 503
Score = 105 bits (263), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 139/285 (48%), Gaps = 1/285 (0%)
Query: 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAV 220
S + +N+ + F K +L + ++F +MLD+ VKP+ +++++LI+ ++A+
Sbjct: 292 VSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAI 351
Query: 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 280
++M S G P+ +TY+++I+ + + ++ A ++ + + ++ LI Y
Sbjct: 352 SMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAY 411
Query: 281 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340
G D + EEM+ G+ P++ TYN L+ + R K ++ ++T GL P+
Sbjct: 412 CKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDL 470
Query: 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 400
T+ L+ Y R + +EM + G++ YN ++ G A +
Sbjct: 471 VTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQ 530
Query: 401 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445
M+ + + +++ ++ S +GK+ +A + NEMLE G PN
Sbjct: 531 MEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPN 575
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 150/360 (41%), Gaps = 82/360 (22%)
Query: 221 EWFERMPSFGCDPDALTYSSMIDAY---GRAGNVEMAFGLYDRARNEKWRIDPNAFS--T 275
E F+R +G AL+ ++ A R+ +VE + R + I PN F+
Sbjct: 174 EAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRK-----IQPNVFTFNV 228
Query: 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAKRPWQVKTIYKEMT 332
+I G + +V E+MK G PN+++YN L+D +G + ++ + KEM
Sbjct: 229 VINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMV 288
Query: 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392
+N +SPN T+ L+ + + ++ V++EM +
Sbjct: 289 ENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLD------------------------ 324
Query: 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452
++ +P+ +++S+I GK+SEA +M ++M+ AG +PNL +L
Sbjct: 325 ------------QDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNAL 372
Query: 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSK 512
I + K + + + G P R L++ + LGK+ +
Sbjct: 373 INGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCK-----LGKIDD-------- 419
Query: 513 LGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLI-DLCVNLNLLENACKLLE 571
G+ +K EE + EG I DV NCLI LC N N +E A KL +
Sbjct: 420 -GFALK---EEMEREG------------IVPDV--GTYNCLIAGLCRNGN-IEAAKKLFD 460
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 109/263 (41%), Gaps = 37/263 (14%)
Query: 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFE 224
VI YN + + +A + D M+ GV+P+ +T++ LI+ N++ +A++ F
Sbjct: 331 VISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFG 390
Query: 225 RMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 284
+ G P Y+ +IDAY + G ++ F L + E D ++ LI G
Sbjct: 391 SVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNG 450
Query: 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP------ 338
N + +++++ + G+ P+++T++ L++ R + + KEM+ GL P
Sbjct: 451 NIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYN 509
Query: 339 ------------------------------NWNTYASLLRAYGRARYGEDTLSVYREMKE 368
N +Y LL+ Y + ED + EM E
Sbjct: 510 IVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLE 569
Query: 369 KGMQLSVTLYNTLLAMCADVGYT 391
KG+ + Y + D G+
Sbjct: 570 KGLVPNRITYEIVKEEMVDQGFV 592
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 20/165 (12%)
Query: 178 CRD--LDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA 235
CR+ ++ A++LFD + +G+ PD VTF L+ KA + M G P
Sbjct: 447 CRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRH 505
Query: 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEK-WRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294
LTY+ ++ Y + GN++ A + + E+ R++ +++ L++ Y G + +
Sbjct: 506 LTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLN 565
Query: 295 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 339
EM G+ PN ITY + + +EM D G P+
Sbjct: 566 EMLEKGLVPNRITY----------------EIVKEEMVDQGFVPD 594
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 148/318 (46%), Gaps = 1/318 (0%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+V YN + K ++ +A + D M+ R P+ VT++TLIS N +A E
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
+ S G PD T++S+I N +A L++ R++ D ++ LI +
Sbjct: 389 RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSK 448
Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
G D LN+ ++M+ G ++ITYN L+D +A + + + I+ EM +G+S N TY
Sbjct: 449 GKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTY 508
Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
+L+ ++R ED + +M +G + YN+LL G +A +I + M +
Sbjct: 509 NTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAM-T 567
Query: 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463
S C+PD T+ ++I+ G+V A + + G +IQ + ++T
Sbjct: 568 SNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTT 627
Query: 464 DVVRALNRLPELGITPDD 481
+ + + E P D
Sbjct: 628 EAINLFREMLEQNEAPPD 645
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 171/371 (46%), Gaps = 10/371 (2%)
Query: 116 EDDVFSVLRCLGDDFLEQDCVIILNNMTN--PDTAALALTYFTNKLKA----SKEVILYN 169
+D++ SV+ + D+F + N M N D +L L ++ + +V +N
Sbjct: 134 QDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFN 193
Query: 170 VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229
V +K + L A + +DM G+ PD TF+T++ + A+ E+M F
Sbjct: 194 VLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEF 253
Query: 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK-WRIDPNAFSTLIKLYGTAGNFDG 288
GC ++ + ++ + + G VE A N+ + D F+TL+ AG+
Sbjct: 254 GCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKH 313
Query: 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348
+ + + M G P++ TYN+++ + + + + +M SPN TY +L+
Sbjct: 314 AIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLIS 373
Query: 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENC 407
+ E+ + R + KG+ V +N+L+ +C + A E+FE+M+S + C
Sbjct: 374 TLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHR-VAMELFEEMRS-KGC 431
Query: 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467
+PD +T++ +I +GK+ EA M +M +G ++ +LI + KA +T +
Sbjct: 432 EPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEE 491
Query: 468 ALNRLPELGIT 478
+ + G++
Sbjct: 492 IFDEMEVHGVS 502
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 137/308 (44%), Gaps = 1/308 (0%)
Query: 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223
+V +N ++ R+ A LF++M +G +PD T++ LI ++A+
Sbjct: 399 DVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNML 458
Query: 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283
++M GC +TY+++ID + +A A ++D + ++TLI +
Sbjct: 459 KQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKS 518
Query: 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343
+ + ++M G KP+ TYN+LL R + I + MT NG P+ TY
Sbjct: 519 RRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTY 578
Query: 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403
+L+ +A E + R ++ KG+ L+ YN ++ T EA +F +M
Sbjct: 579 GTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLE 638
Query: 404 SENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 462
PD+ ++ + +C+ G + EA E+LE GF P L L +
Sbjct: 639 QNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSME 698
Query: 463 DDVVRALN 470
+ +V+ +N
Sbjct: 699 ETLVKLVN 706
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/339 (20%), Positives = 140/339 (41%), Gaps = 41/339 (12%)
Query: 146 DTAALAL-TYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFS 204
D+AAL L + K S E LY + + D +++ +DM + TF
Sbjct: 63 DSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFL 122
Query: 205 TLISCARMNNLPNK---AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA 261
LI L ++ V+W + FG PD Y+ M++
Sbjct: 123 ILIESYAQFELQDEILSVVDWM--IDEFGLKPDTHFYNRMLNLL---------------- 164
Query: 262 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321
+D N+ +KL + + +M G+KP++ T+N L+ + RA +
Sbjct: 165 ------VDGNS----LKLVEIS---------HAKMSVWGIKPDVSTFNVLIKALCRAHQL 205
Query: 322 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 381
+ ++M GL P+ T+ ++++ Y + L + +M E G S N +
Sbjct: 206 RPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVI 265
Query: 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441
+ G ++A ++M + + PD +TF++++ G V A + + ML+ G
Sbjct: 266 VHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEG 325
Query: 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480
++P+++ S+I K + V L+++ +P+
Sbjct: 326 YDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPN 364
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/147 (19%), Positives = 60/147 (40%)
Query: 336 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395
SP Y +L GR+ +D + +MK ++ + + L+ A DE
Sbjct: 79 FSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEIL 138
Query: 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455
+ + M +PD+ ++ M+ + + E +M G +P++ LI+
Sbjct: 139 SVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKA 198
Query: 456 YGKAQRTDDVVRALNRLPELGITPDDR 482
+A + + L +P G+ PD++
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEK 225
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 255,086,095
Number of Sequences: 539616
Number of extensions: 10643139
Number of successful extensions: 37777
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 28100
Number of HSP's gapped (non-prelim): 3049
length of query: 695
length of database: 191,569,459
effective HSP length: 125
effective length of query: 570
effective length of database: 124,117,459
effective search space: 70746951630
effective search space used: 70746951630
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)