Query 005474
Match_columns 695
No_of_seqs 856 out of 4252
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 00:01:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.9E-75 4E-80 660.1 70.8 587 91-686 378-1026(1060)
2 PLN03077 Protein ECB2; Provisi 100.0 3.1E-61 6.8E-66 555.8 52.2 476 144-654 136-760 (857)
3 PLN03081 pentatricopeptide (PP 100.0 6.7E-61 1.5E-65 540.2 51.4 487 139-654 97-597 (697)
4 PLN03218 maturation of RBCL 1; 100.0 1.6E-58 3.5E-63 522.6 57.8 450 130-586 368-851 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 2.9E-56 6.2E-61 502.6 54.2 425 140-581 134-562 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 3.1E-54 6.8E-59 497.7 49.2 446 142-613 99-616 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6.5E-25 1.4E-29 258.7 57.4 454 138-612 440-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-24 2.7E-29 256.4 57.6 424 137-574 473-898 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.1E-20 2.4E-25 199.9 35.1 311 172-496 42-362 (389)
10 PRK11447 cellulose synthase su 99.9 4.5E-18 9.6E-23 202.0 57.3 429 139-577 122-701 (1157)
11 PRK11447 cellulose synthase su 99.9 8.6E-18 1.9E-22 199.6 53.7 420 140-575 280-739 (1157)
12 PRK11788 tetratricopeptide rep 99.9 1.2E-18 2.7E-23 184.2 37.0 298 208-513 43-355 (389)
13 KOG4626 O-linked N-acetylgluco 99.9 5.9E-18 1.3E-22 170.4 35.7 367 165-546 116-488 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 5.2E-18 1.1E-22 170.8 34.9 415 144-577 63-486 (966)
15 TIGR00990 3a0801s09 mitochondr 99.8 5.9E-17 1.3E-21 180.7 47.0 399 166-576 128-571 (615)
16 TIGR00990 3a0801s09 mitochondr 99.8 8.5E-17 1.8E-21 179.4 47.8 393 138-541 136-568 (615)
17 PRK15174 Vi polysaccharide exp 99.8 6.6E-17 1.4E-21 179.7 46.0 320 143-474 56-380 (656)
18 PRK09782 bacteriophage N4 rece 99.8 2.8E-15 6E-20 170.4 52.5 418 142-577 160-707 (987)
19 PRK15174 Vi polysaccharide exp 99.8 3E-16 6.4E-21 174.5 43.6 336 167-514 44-386 (656)
20 PRK10049 pgaA outer membrane p 99.8 5.6E-16 1.2E-20 176.1 45.1 404 132-548 18-461 (765)
21 PRK10049 pgaA outer membrane p 99.8 1.6E-15 3.5E-20 172.3 48.3 404 164-577 14-457 (765)
22 PRK09782 bacteriophage N4 rece 99.8 7E-14 1.5E-18 159.1 51.3 429 127-577 106-673 (987)
23 PRK14574 hmsH outer membrane p 99.8 1.2E-13 2.6E-18 154.0 49.6 428 138-577 43-514 (822)
24 KOG4422 Uncharacterized conser 99.7 3.7E-14 8E-19 137.5 35.4 324 165-493 116-480 (625)
25 PRK14574 hmsH outer membrane p 99.7 1.4E-12 3E-17 145.6 51.4 403 134-548 73-518 (822)
26 KOG2002 TPR-containing nuclear 99.7 3.2E-13 6.9E-18 144.0 41.4 423 145-578 252-711 (1018)
27 KOG4422 Uncharacterized conser 99.7 1.9E-12 4.1E-17 125.8 38.4 355 197-577 204-591 (625)
28 KOG2003 TPR repeat-containing 99.7 1.7E-13 3.6E-18 133.6 28.0 397 171-576 207-689 (840)
29 KOG0495 HAT repeat protein [RN 99.6 4.7E-10 1E-14 114.9 49.1 433 130-577 407-847 (913)
30 KOG2002 TPR-containing nuclear 99.6 3.3E-11 7.1E-16 128.9 42.6 442 125-578 262-747 (1018)
31 TIGR00540 hemY_coli hemY prote 99.6 1.7E-12 3.8E-17 136.9 33.4 286 283-576 97-399 (409)
32 PRK10747 putative protoheme IX 99.6 1.6E-11 3.4E-16 128.9 35.2 282 178-473 97-388 (398)
33 KOG2003 TPR repeat-containing 99.6 1.2E-11 2.5E-16 121.0 30.2 383 145-538 253-716 (840)
34 KOG1915 Cell cycle control pro 99.6 1.1E-09 2.3E-14 108.3 43.5 421 145-581 89-541 (677)
35 PRK10747 putative protoheme IX 99.5 1.9E-11 4.1E-16 128.3 34.0 284 283-576 97-390 (398)
36 TIGR00540 hemY_coli hemY prote 99.5 4.7E-11 1E-15 126.1 35.9 297 168-472 85-396 (409)
37 KOG1155 Anaphase-promoting com 99.5 7.3E-10 1.6E-14 109.4 40.8 330 161-508 160-494 (559)
38 COG3071 HemY Uncharacterized e 99.5 1.3E-10 2.8E-15 113.1 31.9 292 283-582 97-396 (400)
39 PF13429 TPR_15: Tetratricopep 99.5 1.7E-13 3.7E-18 137.3 12.7 224 241-472 50-274 (280)
40 COG2956 Predicted N-acetylgluc 99.5 1.6E-10 3.5E-15 108.9 31.0 285 178-473 48-345 (389)
41 PF13429 TPR_15: Tetratricopep 99.5 1.3E-13 2.8E-18 138.2 11.5 23 551-573 252-274 (280)
42 KOG0495 HAT repeat protein [RN 99.5 7.3E-09 1.6E-13 106.4 45.3 385 178-577 389-783 (913)
43 KOG0547 Translocase of outer m 99.5 4.6E-10 1E-14 111.5 35.6 217 350-575 336-565 (606)
44 KOG2076 RNA polymerase III tra 99.5 5.5E-10 1.2E-14 119.0 37.6 381 171-565 145-544 (895)
45 KOG2076 RNA polymerase III tra 99.5 5.2E-09 1.1E-13 111.8 43.0 327 140-472 184-552 (895)
46 KOG0547 Translocase of outer m 99.5 1E-09 2.2E-14 109.0 35.2 372 143-541 129-563 (606)
47 COG2956 Predicted N-acetylgluc 99.5 4E-10 8.6E-15 106.4 30.8 270 213-525 48-327 (389)
48 COG3071 HemY Uncharacterized e 99.4 9.9E-10 2.2E-14 107.0 33.5 295 169-474 86-389 (400)
49 KOG1126 DNA-binding cell divis 99.4 8.5E-11 1.8E-15 121.4 25.0 284 215-515 334-626 (638)
50 KOG1126 DNA-binding cell divis 99.4 1.4E-10 3E-15 119.8 26.2 283 180-480 334-625 (638)
51 KOG1155 Anaphase-promoting com 99.4 1.1E-08 2.4E-13 101.3 35.9 258 208-474 235-494 (559)
52 KOG1174 Anaphase-promoting com 99.3 7.7E-08 1.7E-12 93.9 37.3 287 283-578 209-502 (564)
53 KOG4318 Bicoid mRNA stability 99.3 4.1E-10 9E-15 119.2 20.8 86 372-461 201-286 (1088)
54 KOG1915 Cell cycle control pro 99.3 6.1E-07 1.3E-11 89.3 40.9 431 163-611 71-532 (677)
55 KOG4318 Bicoid mRNA stability 99.3 4.6E-09 1E-13 111.5 27.5 247 160-427 20-287 (1088)
56 PRK12370 invasion protein regu 99.3 1.2E-08 2.6E-13 112.0 32.4 265 199-475 255-535 (553)
57 PRK12370 invasion protein regu 99.2 8.7E-09 1.9E-13 113.2 31.0 252 249-511 275-537 (553)
58 TIGR02521 type_IV_pilW type IV 99.2 8.1E-09 1.8E-13 100.3 27.6 165 235-402 31-196 (234)
59 KOG2047 mRNA splicing factor [ 99.2 1.6E-06 3.5E-11 89.5 43.8 193 318-512 360-582 (835)
60 TIGR02521 type_IV_pilW type IV 99.2 8.8E-09 1.9E-13 100.1 27.2 201 269-474 30-231 (234)
61 KOG4340 Uncharacterized conser 99.2 7.1E-08 1.5E-12 90.2 30.7 402 145-594 26-454 (459)
62 KOG1173 Anaphase-promoting com 99.2 1.2E-07 2.5E-12 96.6 33.2 285 231-523 240-532 (611)
63 PF13041 PPR_2: PPR repeat fam 99.2 4.5E-11 9.7E-16 84.1 6.5 49 163-211 1-49 (50)
64 KOG1156 N-terminal acetyltrans 99.2 1.2E-06 2.6E-11 90.8 40.2 436 116-571 27-506 (700)
65 PF13041 PPR_2: PPR repeat fam 99.2 6.4E-11 1.4E-15 83.3 6.6 48 269-316 2-49 (50)
66 PF12569 NARP1: NMDA receptor- 99.2 3.8E-07 8.2E-12 96.9 37.4 290 137-439 12-333 (517)
67 KOG1129 TPR repeat-containing 99.1 3.1E-09 6.7E-14 100.3 18.0 222 311-539 229-453 (478)
68 KOG1173 Anaphase-promoting com 99.1 2.2E-07 4.7E-12 94.7 32.1 282 266-555 240-530 (611)
69 PF12569 NARP1: NMDA receptor- 99.1 1.2E-07 2.6E-12 100.8 31.1 290 172-473 11-332 (517)
70 KOG1840 Kinesin light chain [C 99.1 5.2E-08 1.1E-12 102.1 26.2 26 549-574 452-477 (508)
71 KOG1129 TPR repeat-containing 99.1 1.5E-08 3.2E-13 95.9 19.7 229 204-439 227-457 (478)
72 KOG2047 mRNA splicing factor [ 99.1 7.2E-06 1.6E-10 84.9 40.2 402 166-581 103-583 (835)
73 KOG1156 N-terminal acetyltrans 99.1 7.7E-06 1.7E-10 85.0 39.7 452 144-616 22-505 (700)
74 KOG3785 Uncharacterized conser 99.0 1.6E-06 3.4E-11 83.2 31.1 412 140-582 68-496 (557)
75 KOG4162 Predicted calmodulin-b 99.0 4E-06 8.7E-11 88.8 36.3 407 161-577 319-784 (799)
76 KOG1840 Kinesin light chain [C 99.0 2E-07 4.4E-12 97.7 25.2 238 235-472 199-476 (508)
77 KOG2376 Signal recognition par 98.9 9.8E-06 2.1E-10 83.3 34.3 398 145-570 28-514 (652)
78 KOG1174 Anaphase-promoting com 98.9 3.7E-06 8.1E-11 82.5 29.7 294 213-517 209-508 (564)
79 PRK11189 lipoprotein NlpI; Pro 98.9 1.2E-06 2.6E-11 88.1 27.9 128 236-367 65-192 (296)
80 PRK11189 lipoprotein NlpI; Pro 98.9 2.4E-06 5.2E-11 85.9 29.3 194 203-405 67-266 (296)
81 cd05804 StaR_like StaR_like; a 98.9 9.4E-06 2E-10 84.6 34.5 154 175-332 53-213 (355)
82 cd05804 StaR_like StaR_like; a 98.9 1.2E-05 2.5E-10 83.9 35.2 306 165-474 6-335 (355)
83 KOG4162 Predicted calmodulin-b 98.9 1.7E-05 3.7E-10 84.2 35.2 393 137-541 331-780 (799)
84 PF04733 Coatomer_E: Coatomer 98.9 1E-07 2.2E-12 94.4 17.2 256 245-518 11-274 (290)
85 COG3063 PilF Tfp pilus assembl 98.9 2.3E-06 5E-11 77.8 24.0 200 310-513 40-240 (250)
86 KOG3785 Uncharacterized conser 98.8 1.4E-05 3.1E-10 76.9 28.0 396 145-571 38-452 (557)
87 PRK04841 transcriptional regul 98.8 4.6E-05 1E-09 90.1 39.5 262 315-577 462-761 (903)
88 COG3063 PilF Tfp pilus assembl 98.8 8.8E-06 1.9E-10 74.2 25.1 197 238-439 38-235 (250)
89 KOG2376 Signal recognition par 98.8 0.00046 9.9E-09 71.5 39.9 374 141-543 58-519 (652)
90 KOG3616 Selective LIM binding 98.7 5.4E-05 1.2E-09 79.5 31.9 288 244-580 741-1028(1636)
91 PF04733 Coatomer_E: Coatomer 98.7 6.7E-07 1.4E-11 88.6 17.7 220 204-439 39-264 (290)
92 KOG3616 Selective LIM binding 98.7 2.9E-05 6.2E-10 81.4 28.6 134 315-471 742-875 (1636)
93 KOG1914 mRNA cleavage and poly 98.7 0.00045 9.7E-09 70.7 35.8 182 391-574 309-499 (656)
94 KOG4340 Uncharacterized conser 98.7 9.3E-05 2E-09 69.8 28.6 270 144-437 59-336 (459)
95 KOG0548 Molecular co-chaperone 98.7 7.8E-05 1.7E-09 76.2 30.2 382 142-547 15-459 (539)
96 KOG0624 dsRNA-activated protei 98.6 0.00053 1.1E-08 66.2 34.5 319 164-516 37-377 (504)
97 PRK04841 transcriptional regul 98.6 0.00011 2.5E-09 86.8 36.4 369 167-541 343-757 (903)
98 KOG1070 rRNA processing protei 98.6 1.6E-05 3.6E-10 89.1 26.4 235 258-501 1447-1691(1710)
99 KOG3617 WD40 and TPR repeat-co 98.6 4E-05 8.7E-10 81.5 27.8 258 164-472 725-993 (1416)
100 KOG0624 dsRNA-activated protei 98.6 0.00016 3.5E-09 69.6 28.9 303 206-541 44-367 (504)
101 KOG3617 WD40 and TPR repeat-co 98.6 0.0002 4.3E-09 76.5 32.1 225 143-402 742-994 (1416)
102 PF12854 PPR_1: PPR repeat 98.6 1.1E-07 2.4E-12 59.9 4.4 32 441-472 2-33 (34)
103 KOG0548 Molecular co-chaperone 98.5 0.00012 2.6E-09 75.0 26.6 382 173-577 10-456 (539)
104 PF12854 PPR_1: PPR repeat 98.5 2.1E-07 4.5E-12 58.7 4.1 29 232-260 4-32 (34)
105 KOG1070 rRNA processing protei 98.5 0.00011 2.4E-09 82.9 27.5 230 234-468 1457-1693(1710)
106 smart00463 SMR Small MutS-rela 98.5 9.3E-07 2E-11 69.1 8.6 77 589-671 1-78 (80)
107 KOG3081 Vesicle coat complex C 98.5 0.00017 3.7E-09 67.3 24.3 254 246-517 19-279 (299)
108 PLN02789 farnesyltranstransfer 98.4 0.00023 4.9E-09 71.7 26.8 205 175-386 47-266 (320)
109 KOG2053 Mitochondrial inherita 98.4 0.0056 1.2E-07 66.8 42.2 60 483-543 438-501 (932)
110 PLN02789 farnesyltranstransfer 98.4 0.00024 5.2E-09 71.5 26.7 203 213-423 50-267 (320)
111 KOG0985 Vesicle coat protein c 98.4 0.0029 6.3E-08 69.4 34.7 215 162-399 981-1218(1666)
112 KOG1125 TPR repeat-containing 98.4 5.8E-05 1.3E-09 77.8 21.0 245 244-496 294-557 (579)
113 KOG1128 Uncharacterized conser 98.4 3.1E-05 6.7E-10 81.8 18.9 222 231-474 394-615 (777)
114 KOG1127 TPR repeat-containing 98.4 0.0025 5.3E-08 70.1 33.3 144 116-263 475-624 (1238)
115 KOG2053 Mitochondrial inherita 98.3 0.0091 2E-07 65.2 42.5 219 144-370 24-256 (932)
116 KOG1125 TPR repeat-containing 98.3 3.9E-05 8.5E-10 79.0 17.6 96 479-575 428-526 (579)
117 TIGR03302 OM_YfiO outer membra 98.3 0.00013 2.9E-09 70.9 20.8 186 234-440 32-232 (235)
118 TIGR03302 OM_YfiO outer membra 98.3 0.00018 4E-09 69.9 21.5 187 267-475 30-232 (235)
119 PRK14720 transcript cleavage f 98.3 0.00034 7.3E-09 78.5 25.6 220 163-422 29-268 (906)
120 PRK14720 transcript cleavage f 98.2 0.00095 2.1E-08 75.0 28.3 148 307-491 118-267 (906)
121 KOG1128 Uncharacterized conser 98.2 0.00022 4.8E-09 75.5 21.9 220 267-509 395-616 (777)
122 COG5010 TadD Flp pilus assembl 98.2 0.00031 6.6E-09 65.7 20.5 158 274-436 70-227 (257)
123 KOG0985 Vesicle coat protein c 98.2 0.011 2.3E-07 65.3 34.5 246 177-472 1060-1305(1666)
124 KOG3081 Vesicle coat complex C 98.2 0.00083 1.8E-08 62.9 22.9 171 257-439 95-270 (299)
125 KOG3060 Uncharacterized conser 98.2 0.0011 2.3E-08 61.6 22.9 189 319-513 26-224 (289)
126 PRK10370 formate-dependent nit 98.2 0.0004 8.6E-09 65.0 20.9 120 283-405 52-174 (198)
127 COG4783 Putative Zn-dependent 98.2 0.0023 5E-08 65.2 27.2 138 315-474 316-453 (484)
128 COG5010 TadD Flp pilus assembl 98.1 0.00063 1.4E-08 63.7 20.6 124 237-363 102-225 (257)
129 PRK10370 formate-dependent nit 98.1 0.00066 1.4E-08 63.5 20.5 117 319-439 53-172 (198)
130 PRK15179 Vi polysaccharide bio 98.1 0.0013 2.8E-08 73.2 25.9 213 237-473 30-243 (694)
131 PRK15179 Vi polysaccharide bio 98.1 0.0018 3.9E-08 72.1 26.7 183 266-460 82-269 (694)
132 PRK15359 type III secretion sy 98.1 0.0002 4.4E-09 63.2 15.9 90 381-473 30-119 (144)
133 KOG1127 TPR repeat-containing 98.1 0.0097 2.1E-07 65.7 30.8 181 145-333 474-658 (1238)
134 PF10037 MRP-S27: Mitochondria 98.0 3.8E-05 8.3E-10 79.0 11.7 121 374-494 65-186 (429)
135 COG4783 Putative Zn-dependent 98.0 0.00092 2E-08 68.0 20.7 137 421-576 316-454 (484)
136 PRK15359 type III secretion sy 98.0 0.00041 9E-09 61.3 16.4 89 208-298 32-120 (144)
137 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.0004 8.8E-09 71.3 16.6 123 343-473 172-295 (395)
138 KOG1914 mRNA cleavage and poly 97.9 0.039 8.4E-07 57.1 36.2 411 145-564 35-527 (656)
139 TIGR02552 LcrH_SycD type III s 97.9 0.00047 1E-08 60.3 14.9 97 376-475 18-114 (135)
140 TIGR00756 PPR pentatricopeptid 97.9 1.9E-05 4.1E-10 50.4 4.2 33 167-199 2-34 (35)
141 KOG3060 Uncharacterized conser 97.9 0.01 2.2E-07 55.3 23.0 187 179-369 26-220 (289)
142 TIGR00756 PPR pentatricopeptid 97.9 2.2E-05 4.9E-10 50.1 4.2 33 448-480 2-34 (35)
143 PF13812 PPR_3: Pentatricopept 97.9 2.5E-05 5.4E-10 49.5 4.3 33 166-198 2-34 (34)
144 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00049 1.1E-08 70.7 15.5 126 167-298 171-296 (395)
145 TIGR02552 LcrH_SycD type III s 97.8 0.0011 2.3E-08 58.1 15.5 96 341-439 18-113 (135)
146 PF13812 PPR_3: Pentatricopept 97.8 4.2E-05 9E-10 48.5 4.2 32 448-479 3-34 (34)
147 COG3898 Uncharacterized membra 97.7 0.062 1.3E-06 53.4 31.1 222 352-581 166-397 (531)
148 PF09976 TPR_21: Tetratricopep 97.7 0.0021 4.5E-08 57.0 15.0 124 168-295 15-143 (145)
149 PF10037 MRP-S27: Mitochondria 97.7 0.00055 1.2E-08 70.7 12.4 122 232-353 63-186 (429)
150 PF09976 TPR_21: Tetratricopep 97.6 0.0038 8.3E-08 55.3 15.7 85 348-435 56-142 (145)
151 PF14938 SNAP: Soluble NSF att 97.6 0.0093 2E-07 59.5 20.3 93 415-507 159-264 (282)
152 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.4E-09 45.3 3.5 29 167-195 2-30 (31)
153 KOG0553 TPR repeat-containing 97.5 0.0027 5.8E-08 60.8 13.4 98 421-522 91-191 (304)
154 PF06239 ECSIT: Evolutionarily 97.5 0.0029 6.2E-08 57.9 13.0 88 409-496 45-153 (228)
155 PF08579 RPM2: Mitochondrial r 97.5 0.0022 4.8E-08 51.8 10.8 41 277-317 32-73 (120)
156 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.5E-09 45.2 2.9 29 448-476 2-30 (31)
157 PF06239 ECSIT: Evolutionarily 97.4 0.0016 3.5E-08 59.5 11.0 105 162-285 44-153 (228)
158 PF08579 RPM2: Mitochondrial r 97.4 0.0021 4.5E-08 52.0 10.3 79 309-387 29-116 (120)
159 KOG2041 WD40 repeat protein [G 97.4 0.053 1.2E-06 57.6 23.0 235 197-473 689-950 (1189)
160 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0052 1.1E-07 52.1 13.0 98 378-475 5-105 (119)
161 cd00189 TPR Tetratricopeptide 97.3 0.0041 8.8E-08 49.7 11.8 92 379-473 4-95 (100)
162 cd00189 TPR Tetratricopeptide 97.3 0.0041 8.8E-08 49.7 11.7 87 242-330 7-93 (100)
163 PF05843 Suf: Suppressor of fo 97.3 0.0061 1.3E-07 60.6 14.7 136 376-516 2-143 (280)
164 PRK10866 outer membrane biogen 97.3 0.16 3.5E-06 49.2 23.8 60 240-300 37-99 (243)
165 PF14938 SNAP: Soluble NSF att 97.3 0.1 2.2E-06 52.2 22.9 97 377-473 157-264 (282)
166 PF01713 Smr: Smr domain; Int 97.2 0.0014 3E-08 51.6 7.4 72 592-671 1-81 (83)
167 PF05843 Suf: Suppressor of fo 97.2 0.0086 1.9E-07 59.6 14.4 131 166-299 2-136 (280)
168 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.014 3.1E-07 49.4 14.1 9 284-292 16-24 (119)
169 PLN03088 SGT1, suppressor of 97.2 0.0089 1.9E-07 61.7 14.8 85 385-473 12-97 (356)
170 PRK10866 outer membrane biogen 97.1 0.19 4E-06 48.8 22.5 182 270-472 32-238 (243)
171 KOG0553 TPR repeat-containing 97.1 0.0045 9.8E-08 59.3 10.9 100 384-489 90-190 (304)
172 PRK02603 photosystem I assembl 97.1 0.028 6.1E-07 51.4 15.8 83 343-427 38-122 (172)
173 PLN03088 SGT1, suppressor of 97.1 0.016 3.5E-07 59.9 15.5 89 348-439 10-98 (356)
174 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.48 1E-05 48.2 28.9 419 148-577 28-532 (660)
175 PF12895 Apc3: Anaphase-promot 97.0 0.0016 3.4E-08 51.5 5.8 18 453-470 65-82 (84)
176 CHL00033 ycf3 photosystem I as 97.0 0.015 3.2E-07 53.0 13.0 62 342-403 37-100 (168)
177 PRK10153 DNA-binding transcrip 97.0 0.039 8.5E-07 59.6 18.1 68 445-514 419-487 (517)
178 PRK02603 photosystem I assembl 97.0 0.029 6.4E-07 51.3 14.9 96 164-260 34-131 (172)
179 PRK15363 pathogenicity island 97.0 0.051 1.1E-06 47.6 14.9 94 377-473 37-130 (157)
180 COG4700 Uncharacterized protei 97.0 0.26 5.6E-06 44.0 19.4 124 162-289 86-212 (251)
181 PF12895 Apc3: Anaphase-promot 96.9 0.0015 3.3E-08 51.5 5.1 52 520-572 31-83 (84)
182 KOG1538 Uncharacterized conser 96.9 0.034 7.5E-07 58.5 15.9 40 288-330 618-657 (1081)
183 CHL00033 ycf3 photosystem I as 96.9 0.015 3.3E-07 53.0 12.4 27 237-263 74-100 (168)
184 PRK10153 DNA-binding transcrip 96.9 0.11 2.3E-06 56.4 20.5 74 408-485 417-490 (517)
185 KOG1538 Uncharacterized conser 96.9 0.065 1.4E-06 56.5 17.5 92 164-260 555-657 (1081)
186 COG3898 Uncharacterized membra 96.9 0.57 1.2E-05 46.9 32.7 142 145-298 69-216 (531)
187 PRK15363 pathogenicity island 96.9 0.033 7.1E-07 48.8 13.1 92 345-439 40-131 (157)
188 COG4700 Uncharacterized protei 96.7 0.38 8.3E-06 42.9 18.7 141 371-512 85-229 (251)
189 KOG2796 Uncharacterized conser 96.7 0.069 1.5E-06 50.2 14.5 132 167-299 179-315 (366)
190 KOG0550 Molecular chaperone (D 96.7 0.2 4.4E-06 50.3 18.5 83 457-540 260-346 (486)
191 PF13525 YfiO: Outer membrane 96.7 0.28 6E-06 46.2 19.2 173 241-429 11-196 (203)
192 PF12688 TPR_5: Tetratrico pep 96.7 0.12 2.5E-06 43.6 14.5 54 350-403 11-66 (120)
193 KOG2041 WD40 repeat protein [G 96.6 1.3 2.9E-05 47.6 24.8 192 139-368 744-951 (1189)
194 PF12688 TPR_5: Tetratrico pep 96.5 0.14 3.1E-06 43.1 14.3 88 243-332 9-102 (120)
195 PF14559 TPR_19: Tetratricopep 96.5 0.0079 1.7E-07 45.1 6.1 50 248-298 4-53 (68)
196 COG4235 Cytochrome c biogenesi 96.5 0.074 1.6E-06 51.5 13.8 94 445-541 155-253 (287)
197 PF13432 TPR_16: Tetratricopep 96.5 0.015 3.1E-07 43.2 7.2 57 242-299 4-60 (65)
198 PF14559 TPR_19: Tetratricopep 96.5 0.011 2.4E-07 44.3 6.6 49 424-473 4-52 (68)
199 KOG1130 Predicted G-alpha GTPa 96.5 0.054 1.2E-06 54.1 12.7 60 413-472 197-261 (639)
200 KOG0550 Molecular chaperone (D 96.4 1.3 2.9E-05 44.8 24.5 275 170-476 54-351 (486)
201 PF13432 TPR_16: Tetratricopep 96.3 0.019 4E-07 42.6 7.1 52 421-473 7-58 (65)
202 PF04840 Vps16_C: Vps16, C-ter 96.3 1.5 3.2E-05 44.4 25.8 79 382-471 184-262 (319)
203 COG4235 Cytochrome c biogenesi 96.3 0.21 4.7E-06 48.4 15.5 109 374-488 155-267 (287)
204 KOG1130 Predicted G-alpha GTPa 96.3 0.044 9.6E-07 54.6 11.0 131 343-473 198-342 (639)
205 PF13525 YfiO: Outer membrane 96.3 0.5 1.1E-05 44.4 18.1 59 276-334 11-71 (203)
206 KOG2796 Uncharacterized conser 96.2 1.1 2.4E-05 42.4 25.6 143 341-487 178-325 (366)
207 PF13414 TPR_11: TPR repeat; P 96.1 0.025 5.3E-07 42.5 6.9 61 236-297 4-65 (69)
208 PF04840 Vps16_C: Vps16, C-ter 96.1 1.8 3.9E-05 43.7 28.9 111 342-473 179-289 (319)
209 PF13414 TPR_11: TPR repeat; P 95.9 0.035 7.6E-07 41.6 7.0 59 413-473 5-65 (69)
210 PF03704 BTAD: Bacterial trans 95.8 0.056 1.2E-06 47.9 8.8 69 238-307 65-138 (146)
211 KOG3941 Intermediate in Toll s 95.8 0.074 1.6E-06 50.5 9.5 105 162-285 64-173 (406)
212 PRK10803 tol-pal system protei 95.8 0.13 2.9E-06 50.2 11.9 87 211-299 154-246 (263)
213 PRK10803 tol-pal system protei 95.7 0.16 3.5E-06 49.6 12.2 98 414-513 146-250 (263)
214 PF12921 ATP13: Mitochondrial 95.7 0.21 4.4E-06 42.6 11.2 48 442-489 48-96 (126)
215 PF09205 DUF1955: Domain of un 95.7 0.89 1.9E-05 38.2 14.2 63 378-442 89-151 (161)
216 PF13281 DUF4071: Domain of un 95.6 2.7 5.9E-05 43.0 20.9 23 241-263 147-169 (374)
217 PF13281 DUF4071: Domain of un 95.6 3.3 7.1E-05 42.4 22.4 76 171-246 147-228 (374)
218 PF12921 ATP13: Mitochondrial 95.5 0.2 4.3E-06 42.7 10.5 84 374-457 1-99 (126)
219 PF13371 TPR_9: Tetratricopept 95.5 0.095 2.1E-06 39.7 8.0 55 244-299 4-58 (73)
220 PF03704 BTAD: Bacterial trans 95.4 0.1 2.2E-06 46.2 9.1 58 379-438 66-123 (146)
221 PF13424 TPR_12: Tetratricopep 95.4 0.019 4.2E-07 44.4 3.8 59 516-575 7-74 (78)
222 KOG3941 Intermediate in Toll s 95.4 0.21 4.6E-06 47.5 11.0 79 428-506 89-185 (406)
223 PF13371 TPR_9: Tetratricopept 95.1 0.15 3.3E-06 38.6 8.0 53 420-473 4-56 (73)
224 PF08631 SPO22: Meiosis protei 94.9 4.4 9.6E-05 40.2 26.0 123 176-299 4-150 (278)
225 PRK11906 transcriptional regul 94.9 0.29 6.3E-06 50.6 11.4 80 497-577 321-402 (458)
226 PF13424 TPR_12: Tetratricopep 94.8 0.099 2.1E-06 40.3 6.4 61 413-473 7-73 (78)
227 KOG1920 IkappaB kinase complex 94.8 10 0.00022 44.0 24.7 27 237-263 792-820 (1265)
228 PF10300 DUF3808: Protein of u 94.8 1.7 3.8E-05 46.7 17.6 95 168-264 232-334 (468)
229 KOG2280 Vacuolar assembly/sort 94.8 8.1 0.00018 42.4 29.5 345 194-572 426-795 (829)
230 PF04053 Coatomer_WDAD: Coatom 94.7 0.7 1.5E-05 48.9 14.0 129 203-364 298-426 (443)
231 KOG2280 Vacuolar assembly/sort 94.5 9.1 0.0002 42.1 24.3 128 169-298 441-574 (829)
232 PF08631 SPO22: Meiosis protei 94.5 5.7 0.00012 39.5 25.9 123 211-334 4-150 (278)
233 smart00299 CLH Clathrin heavy 94.4 2.7 5.9E-05 36.7 15.4 85 169-261 11-95 (140)
234 PRK11906 transcriptional regul 94.4 3.6 7.8E-05 42.9 17.8 109 391-505 320-432 (458)
235 PRK15331 chaperone protein Sic 94.4 3.2 6.9E-05 36.8 15.0 85 352-439 49-133 (165)
236 COG3118 Thioredoxin domain-con 94.3 5.2 0.00011 39.0 17.5 51 246-297 145-195 (304)
237 PLN03098 LPA1 LOW PSII ACCUMUL 94.3 0.72 1.6E-05 47.8 12.6 63 234-298 74-140 (453)
238 COG0457 NrfG FOG: TPR repeat [ 94.3 4.8 0.0001 37.8 29.9 63 271-333 60-123 (291)
239 PRK15331 chaperone protein Sic 94.3 2.9 6.2E-05 37.1 14.5 91 381-474 43-133 (165)
240 KOG0543 FKBP-type peptidyl-pro 94.3 1 2.3E-05 45.6 13.3 119 382-523 215-334 (397)
241 PF04184 ST7: ST7 protein; In 94.3 7.7 0.00017 40.7 19.6 101 415-516 263-382 (539)
242 KOG1585 Protein required for f 94.2 5 0.00011 37.8 16.9 88 165-262 31-118 (308)
243 smart00299 CLH Clathrin heavy 94.2 3.5 7.6E-05 35.9 16.0 84 240-331 12-95 (140)
244 COG5107 RNA14 Pre-mRNA 3'-end 94.1 8.3 0.00018 39.7 30.4 90 121-214 30-123 (660)
245 PF07035 Mic1: Colon cancer-as 94.0 4.3 9.4E-05 36.3 15.5 132 186-333 15-148 (167)
246 COG0457 NrfG FOG: TPR repeat [ 94.0 5.6 0.00012 37.4 30.1 168 235-403 59-230 (291)
247 PF13170 DUF4003: Protein of u 93.9 7.5 0.00016 38.8 20.5 22 324-345 81-102 (297)
248 PLN03098 LPA1 LOW PSII ACCUMUL 93.8 1.2 2.6E-05 46.2 13.0 66 162-229 72-141 (453)
249 PF04053 Coatomer_WDAD: Coatom 93.8 1.7 3.8E-05 46.0 14.8 20 273-292 298-317 (443)
250 PF07079 DUF1347: Protein of u 93.7 9.9 0.00021 39.3 40.4 396 145-552 61-530 (549)
251 KOG0543 FKBP-type peptidyl-pro 93.7 1.1 2.4E-05 45.4 12.2 137 312-473 215-353 (397)
252 COG4105 ComL DNA uptake lipopr 93.6 6.9 0.00015 37.4 21.4 80 236-316 36-117 (254)
253 COG3118 Thioredoxin domain-con 93.6 6.4 0.00014 38.4 16.7 145 171-319 140-286 (304)
254 KOG1941 Acetylcholine receptor 93.5 4.9 0.00011 40.1 15.7 97 377-473 85-189 (518)
255 PF13170 DUF4003: Protein of u 93.4 4.1 8.8E-05 40.7 15.9 129 181-311 78-223 (297)
256 PF02259 FAT: FAT domain; Int 93.4 11 0.00024 38.9 21.7 66 374-439 145-212 (352)
257 KOG4555 TPR repeat-containing 93.2 2.7 5.8E-05 35.4 11.6 91 384-476 52-145 (175)
258 PF10300 DUF3808: Protein of u 93.1 15 0.00033 39.6 23.8 162 274-439 192-375 (468)
259 KOG2610 Uncharacterized conser 92.8 2.7 5.8E-05 41.4 12.9 119 175-296 113-235 (491)
260 PF04184 ST7: ST7 protein; In 92.6 9.9 0.00022 39.9 17.4 58 346-403 265-323 (539)
261 KOG4555 TPR repeat-containing 92.4 3.2 6.9E-05 34.9 11.1 53 175-228 53-105 (175)
262 PF13512 TPR_18: Tetratricopep 92.4 4.7 0.0001 34.9 12.7 57 384-440 19-76 (142)
263 KOG2114 Vacuolar assembly/sort 92.3 21 0.00045 40.0 20.0 43 530-573 720-762 (933)
264 COG4785 NlpI Lipoprotein NlpI, 92.3 9.4 0.0002 35.4 15.5 87 138-228 74-161 (297)
265 KOG2114 Vacuolar assembly/sort 92.2 2.2 4.8E-05 47.1 12.8 213 167-402 285-517 (933)
266 COG4105 ComL DNA uptake lipopr 92.0 12 0.00026 35.9 20.2 55 280-334 44-100 (254)
267 KOG1920 IkappaB kinase complex 92.0 30 0.00065 40.5 23.5 134 311-473 914-1053(1265)
268 KOG1550 Extracellular protein 92.0 23 0.0005 39.2 22.9 45 251-298 228-277 (552)
269 PF04097 Nic96: Nup93/Nic96; 92.0 22 0.00047 39.9 20.9 30 549-581 502-536 (613)
270 COG3629 DnrI DNA-binding trans 92.0 1.8 3.9E-05 42.3 10.8 78 236-314 154-236 (280)
271 PF13431 TPR_17: Tetratricopep 91.8 0.14 3E-06 32.1 2.0 32 503-535 2-33 (34)
272 PF13176 TPR_7: Tetratricopept 91.6 0.35 7.5E-06 30.7 3.8 26 550-575 2-27 (36)
273 PF10345 Cohesin_load: Cohesin 91.5 28 0.00061 39.1 42.6 427 145-574 37-604 (608)
274 COG1729 Uncharacterized protei 91.5 4 8.6E-05 39.3 12.3 88 352-439 153-243 (262)
275 PF13512 TPR_18: Tetratricopep 91.2 5.2 0.00011 34.6 11.6 53 422-474 21-75 (142)
276 KOG1550 Extracellular protein 91.1 28 0.00061 38.5 24.5 85 177-265 261-358 (552)
277 PF13428 TPR_14: Tetratricopep 91.1 0.59 1.3E-05 31.2 4.8 27 448-474 3-29 (44)
278 KOG1941 Acetylcholine receptor 90.9 19 0.00041 36.2 16.6 55 383-437 214-272 (518)
279 PF09205 DUF1955: Domain of un 90.3 10 0.00022 32.1 15.6 134 248-406 15-151 (161)
280 PF07035 Mic1: Colon cancer-as 90.3 13 0.00028 33.3 15.5 131 290-435 14-144 (167)
281 COG1729 Uncharacterized protei 90.0 5.1 0.00011 38.7 11.6 63 452-514 184-249 (262)
282 COG3629 DnrI DNA-binding trans 89.8 3.8 8.3E-05 40.1 10.8 58 379-438 157-214 (280)
283 PF13428 TPR_14: Tetratricopep 89.5 1.1 2.5E-05 29.8 5.2 24 275-298 6-29 (44)
284 KOG2610 Uncharacterized conser 89.5 24 0.00052 35.1 19.1 153 212-366 115-273 (491)
285 KOG1258 mRNA processing protei 88.9 38 0.00081 36.6 31.8 185 374-564 296-492 (577)
286 PF10602 RPN7: 26S proteasome 88.7 5.6 0.00012 36.3 10.7 61 237-297 38-100 (177)
287 KOG1585 Protein required for f 88.7 22 0.00048 33.7 18.1 201 277-503 38-250 (308)
288 PF09613 HrpB1_HrpK: Bacterial 88.5 5.2 0.00011 35.4 9.7 61 497-558 27-88 (160)
289 PF07079 DUF1347: Protein of u 88.5 34 0.00074 35.6 37.7 423 138-572 15-520 (549)
290 PF10602 RPN7: 26S proteasome 88.1 6.4 0.00014 36.0 10.6 63 271-333 37-101 (177)
291 KOG2066 Vacuolar assembly/sort 87.9 50 0.0011 36.9 24.3 35 530-570 636-670 (846)
292 COG4649 Uncharacterized protei 87.4 21 0.00045 31.9 15.1 140 163-303 57-200 (221)
293 KOG4570 Uncharacterized conser 86.9 6.2 0.00013 38.6 9.9 49 390-439 115-163 (418)
294 PRK09687 putative lyase; Provi 86.9 34 0.00075 33.9 28.1 232 234-491 36-277 (280)
295 COG4649 Uncharacterized protei 86.7 23 0.0005 31.7 14.0 122 144-265 73-197 (221)
296 PF07719 TPR_2: Tetratricopept 85.9 1.5 3.2E-05 27.0 3.8 29 549-577 3-31 (34)
297 PF13176 TPR_7: Tetratricopept 85.3 2.1 4.5E-05 27.1 4.2 26 167-192 1-26 (36)
298 PF09613 HrpB1_HrpK: Bacterial 84.5 29 0.00062 30.8 14.1 19 280-298 54-72 (160)
299 PF00515 TPR_1: Tetratricopept 84.3 2 4.3E-05 26.5 3.8 29 549-577 3-31 (34)
300 COG3947 Response regulator con 84.2 44 0.00095 32.7 16.0 67 415-483 283-355 (361)
301 COG1747 Uncharacterized N-term 84.2 61 0.0013 34.4 22.1 181 267-455 63-248 (711)
302 PF13374 TPR_10: Tetratricopep 84.0 1.9 4.1E-05 28.0 3.8 27 549-575 4-30 (42)
303 PF13929 mRNA_stabil: mRNA sta 83.2 49 0.0011 32.5 16.1 138 178-315 141-288 (292)
304 PF04190 DUF410: Protein of un 82.0 54 0.0012 32.1 18.1 26 374-399 89-114 (260)
305 PRK09687 putative lyase; Provi 81.9 57 0.0012 32.4 28.8 222 267-511 34-265 (280)
306 TIGR02561 HrpB1_HrpK type III 81.8 14 0.0003 32.2 8.9 65 497-562 27-93 (153)
307 COG2976 Uncharacterized protei 81.0 45 0.00098 30.6 14.3 93 453-577 96-189 (207)
308 PF06552 TOM20_plant: Plant sp 80.7 12 0.00026 33.7 8.5 61 497-557 52-123 (186)
309 PF13431 TPR_17: Tetratricopep 80.7 2.6 5.5E-05 26.3 3.2 22 268-289 11-32 (34)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 80.1 14 0.00031 29.4 7.6 49 320-368 22-70 (103)
311 COG2909 MalT ATP-dependent tra 79.9 1.2E+02 0.0026 34.7 26.4 288 182-479 298-651 (894)
312 PF00515 TPR_1: Tetratricopept 79.9 4.9 0.00011 24.6 4.4 28 447-474 2-29 (34)
313 PF13181 TPR_8: Tetratricopept 79.7 3.9 8.4E-05 25.1 3.9 29 549-577 3-31 (34)
314 PF02284 COX5A: Cytochrome c o 78.6 10 0.00022 30.5 6.5 47 323-369 28-74 (108)
315 cd00923 Cyt_c_Oxidase_Va Cytoc 78.2 15 0.00032 29.3 7.2 61 356-418 23-83 (103)
316 PF13929 mRNA_stabil: mRNA sta 78.1 73 0.0016 31.3 18.5 135 216-350 144-288 (292)
317 KOG4570 Uncharacterized conser 77.9 8 0.00017 37.9 6.9 47 216-262 116-162 (418)
318 KOG1586 Protein required for f 77.7 65 0.0014 30.5 20.3 18 423-440 166-183 (288)
319 COG2909 MalT ATP-dependent tra 77.7 1.4E+02 0.003 34.2 24.7 225 246-471 426-684 (894)
320 COG1747 Uncharacterized N-term 77.4 1E+02 0.0023 32.7 25.5 178 234-420 65-248 (711)
321 KOG0276 Vesicle coat complex C 76.7 39 0.00084 36.5 11.9 163 164-366 580-747 (794)
322 KOG4234 TPR repeat-containing 76.0 42 0.00092 30.9 10.4 98 421-520 105-208 (271)
323 KOG0276 Vesicle coat complex C 75.6 63 0.0014 35.0 13.1 133 166-331 615-747 (794)
324 COG3947 Response regulator con 75.5 86 0.0019 30.8 16.9 70 377-448 281-355 (361)
325 PRK15180 Vi polysaccharide bio 75.5 22 0.00047 37.0 9.6 119 351-474 300-419 (831)
326 COG4785 NlpI Lipoprotein NlpI, 75.3 72 0.0016 29.9 18.1 64 235-299 99-162 (297)
327 KOG4648 Uncharacterized conser 75.3 11 0.00023 37.4 7.1 52 384-437 106-157 (536)
328 PF11207 DUF2989: Protein of u 75.3 31 0.00068 31.9 9.7 71 393-465 124-197 (203)
329 PF02284 COX5A: Cytochrome c o 75.1 19 0.00042 29.0 7.2 45 429-473 28-72 (108)
330 PF13374 TPR_10: Tetratricopep 75.0 7.4 0.00016 25.0 4.5 28 166-193 3-30 (42)
331 PF07719 TPR_2: Tetratricopept 74.7 7.6 0.00017 23.6 4.2 27 448-474 3-29 (34)
332 PF07721 TPR_4: Tetratricopept 74.2 4.4 9.5E-05 23.3 2.7 22 550-571 4-25 (26)
333 PF00637 Clathrin: Region in C 72.1 1.5 3.3E-05 38.4 0.6 53 242-294 14-66 (143)
334 COG5159 RPN6 26S proteasome re 71.8 1E+02 0.0022 30.1 16.1 95 345-439 130-234 (421)
335 PF00637 Clathrin: Region in C 71.7 1.7 3.7E-05 38.1 0.9 53 312-364 14-66 (143)
336 TIGR02561 HrpB1_HrpK type III 71.4 71 0.0015 28.0 12.6 20 280-299 54-73 (153)
337 COG5187 RPN7 26S proteasome re 71.0 1.1E+02 0.0023 30.1 12.3 118 375-495 115-241 (412)
338 PF02259 FAT: FAT domain; Int 70.7 1.3E+02 0.0028 30.8 23.1 65 339-403 145-212 (352)
339 TIGR03504 FimV_Cterm FimV C-te 69.6 7.9 0.00017 25.8 3.4 26 552-577 4-29 (44)
340 KOG2034 Vacuolar sorting prote 69.4 2.1E+02 0.0046 32.7 23.1 47 380-436 509-555 (911)
341 KOG2063 Vacuolar assembly/sort 68.2 2E+02 0.0044 33.4 16.0 39 279-317 600-638 (877)
342 PF04097 Nic96: Nup93/Nic96; 68.0 2.1E+02 0.0045 32.2 16.3 89 312-405 265-357 (613)
343 KOG0890 Protein kinase of the 67.8 3.7E+02 0.008 34.8 25.2 150 240-399 1388-1542(2382)
344 PF07163 Pex26: Pex26 protein; 67.4 66 0.0014 31.4 10.2 87 207-293 90-181 (309)
345 COG2840 Uncharacterized protei 66.8 19 0.0004 32.8 6.3 66 591-663 98-166 (184)
346 PF06552 TOM20_plant: Plant sp 66.7 47 0.001 30.1 8.6 60 428-491 52-123 (186)
347 COG4455 ImpE Protein of avirul 66.4 37 0.0008 31.7 8.0 73 277-350 8-82 (273)
348 KOG1258 mRNA processing protei 65.1 2.1E+02 0.0046 31.2 33.7 359 146-517 62-478 (577)
349 PF13174 TPR_6: Tetratricopept 65.1 8.1 0.00017 23.3 2.7 25 552-576 5-29 (33)
350 KOG3807 Predicted membrane pro 64.2 1.6E+02 0.0035 29.4 13.3 56 381-439 281-339 (556)
351 KOG1586 Protein required for f 64.0 1.4E+02 0.003 28.5 21.6 20 386-405 165-184 (288)
352 COG2976 Uncharacterized protei 63.8 1.2E+02 0.0027 27.9 15.3 90 381-476 95-189 (207)
353 TIGR03504 FimV_Cterm FimV C-te 63.4 14 0.00031 24.6 3.7 23 452-474 5-27 (44)
354 PF07163 Pex26: Pex26 protein; 63.3 78 0.0017 30.9 9.9 89 168-258 86-181 (309)
355 PF13174 TPR_6: Tetratricopept 63.3 11 0.00023 22.7 3.0 23 452-474 6-28 (33)
356 KOG2391 Vacuolar sorting prote 62.9 1.5E+02 0.0031 29.8 11.8 46 236-282 300-345 (365)
357 PF13181 TPR_8: Tetratricopept 62.9 21 0.00046 21.6 4.4 27 272-298 3-29 (34)
358 PF13762 MNE1: Mitochondrial s 62.2 1.1E+02 0.0024 26.8 10.3 79 168-246 42-126 (145)
359 KOG0991 Replication factor C, 61.3 1.5E+02 0.0033 28.2 12.9 40 443-483 236-275 (333)
360 KOG2063 Vacuolar assembly/sort 60.7 3.3E+02 0.0071 31.8 19.9 26 238-263 507-532 (877)
361 KOG4648 Uncharacterized conser 60.5 44 0.00095 33.4 7.9 88 313-403 105-193 (536)
362 KOG4642 Chaperone-dependent E3 58.9 69 0.0015 30.5 8.5 76 497-572 61-142 (284)
363 smart00028 TPR Tetratricopepti 58.6 16 0.00034 21.0 3.3 28 549-576 3-30 (34)
364 TIGR02508 type_III_yscG type I 58.1 99 0.0021 25.0 8.4 49 351-405 50-98 (115)
365 KOG2066 Vacuolar assembly/sort 58.0 3.2E+02 0.007 30.9 28.1 156 134-297 361-532 (846)
366 TIGR02508 type_III_yscG type I 57.7 1E+02 0.0022 25.0 8.9 51 209-265 48-98 (115)
367 KOG0687 26S proteasome regulat 57.6 2.1E+02 0.0046 28.7 14.0 70 413-482 106-180 (393)
368 KOG1464 COP9 signalosome, subu 56.2 2E+02 0.0043 27.9 17.5 175 229-403 20-219 (440)
369 KOG2297 Predicted translation 56.2 2.2E+02 0.0047 28.3 17.7 68 283-360 268-341 (412)
370 PHA02875 ankyrin repeat protei 55.9 1.4E+02 0.0031 31.5 12.0 76 176-259 10-89 (413)
371 KOG2659 LisH motif-containing 55.4 1.4E+02 0.0031 28.2 10.0 65 161-227 22-91 (228)
372 PF13762 MNE1: Mitochondrial s 55.3 1.4E+02 0.0031 26.0 10.4 79 309-387 43-127 (145)
373 KOG3364 Membrane protein invol 55.3 1.4E+02 0.003 25.8 8.9 72 444-516 30-107 (149)
374 PRK04946 hypothetical protein; 54.1 40 0.00086 30.8 6.2 62 591-663 97-160 (181)
375 PF10579 Rapsyn_N: Rapsyn N-te 53.6 42 0.00091 25.7 5.1 21 448-468 45-65 (80)
376 COG4455 ImpE Protein of avirul 53.4 2E+02 0.0044 27.1 12.1 76 378-455 4-81 (273)
377 KOG4234 TPR repeat-containing 53.3 1.9E+02 0.0041 26.8 10.3 86 386-475 106-197 (271)
378 KOG4077 Cytochrome c oxidase, 51.2 1E+02 0.0022 26.1 7.4 47 323-369 67-113 (149)
379 PHA02875 ankyrin repeat protei 51.1 95 0.0021 32.8 9.8 12 241-252 38-49 (413)
380 KOG0890 Protein kinase of the 50.6 7E+02 0.015 32.6 26.1 150 170-329 1388-1542(2382)
381 PF14853 Fis1_TPR_C: Fis1 C-te 49.7 52 0.0011 23.0 4.9 31 490-520 10-41 (53)
382 PF11848 DUF3368: Domain of un 49.4 66 0.0014 21.9 5.3 31 423-453 14-44 (48)
383 PRK15180 Vi polysaccharide bio 48.7 3.6E+02 0.0078 28.6 27.9 87 175-263 333-419 (831)
384 PF08311 Mad3_BUB1_I: Mad3/BUB 48.1 1.3E+02 0.0029 25.5 8.3 43 393-435 81-123 (126)
385 KOG4077 Cytochrome c oxidase, 47.9 85 0.0019 26.5 6.5 40 188-227 72-111 (149)
386 PF11846 DUF3366: Domain of un 47.6 68 0.0015 29.7 7.0 32 197-228 141-172 (193)
387 PF14689 SPOB_a: Sensor_kinase 47.0 43 0.00093 24.3 4.3 27 447-473 24-50 (62)
388 PF11846 DUF3366: Domain of un 46.2 79 0.0017 29.2 7.3 32 408-439 141-172 (193)
389 PF09477 Type_III_YscG: Bacter 45.4 1.6E+02 0.0035 24.1 7.5 75 391-473 22-96 (116)
390 PF08424 NRDE-2: NRDE-2, neces 45.4 3.4E+02 0.0075 27.5 17.8 79 357-438 48-129 (321)
391 PF07575 Nucleopor_Nup85: Nup8 45.4 1.3E+02 0.0029 33.4 10.0 76 360-438 390-465 (566)
392 PF11848 DUF3368: Domain of un 44.3 84 0.0018 21.4 5.2 31 177-207 14-44 (48)
393 KOG2297 Predicted translation 44.1 3.4E+02 0.0073 27.0 19.5 20 412-431 322-341 (412)
394 PF14689 SPOB_a: Sensor_kinase 43.9 51 0.0011 23.9 4.3 23 275-297 28-50 (62)
395 PF11207 DUF2989: Protein of u 43.8 2.7E+02 0.0059 25.9 16.9 42 283-324 153-197 (203)
396 PF04910 Tcf25: Transcriptiona 43.1 4E+02 0.0087 27.6 16.0 154 408-574 37-220 (360)
397 KOG0292 Vesicle coat complex C 43.0 2.7E+02 0.0058 32.1 11.1 178 177-404 605-782 (1202)
398 PF08311 Mad3_BUB1_I: Mad3/BUB 42.9 2.1E+02 0.0046 24.3 9.2 62 408-472 63-125 (126)
399 PF09670 Cas_Cas02710: CRISPR- 42.8 3.5E+02 0.0077 28.2 12.0 55 173-228 139-197 (379)
400 PRK13342 recombination factor 42.2 4.4E+02 0.0096 27.8 19.0 32 283-314 243-274 (413)
401 KOG2062 26S proteasome regulat 42.0 5.6E+02 0.012 29.0 29.6 27 273-299 213-239 (929)
402 cd00280 TRFH Telomeric Repeat 41.5 1.5E+02 0.0032 27.1 7.5 20 209-228 120-139 (200)
403 cd00280 TRFH Telomeric Repeat 41.5 1.8E+02 0.0039 26.6 8.0 23 381-403 117-139 (200)
404 PRK10564 maltose regulon perip 41.1 63 0.0014 32.0 5.7 38 161-198 252-290 (303)
405 KOG4507 Uncharacterized conser 40.8 2.1E+02 0.0045 31.2 9.6 51 247-298 654-704 (886)
406 COG0735 Fur Fe2+/Zn2+ uptake r 40.4 1.7E+02 0.0036 25.7 7.8 61 328-389 9-69 (145)
407 PF14669 Asp_Glu_race_2: Putat 40.4 3E+02 0.0065 25.4 15.1 55 345-399 137-205 (233)
408 COG4941 Predicted RNA polymera 40.1 3.7E+02 0.008 27.2 10.6 110 462-577 272-395 (415)
409 COG5108 RPO41 Mitochondrial DN 40.0 1.6E+02 0.0034 32.5 8.7 47 170-216 33-81 (1117)
410 PRK10564 maltose regulon perip 39.6 68 0.0015 31.7 5.7 37 231-267 252-289 (303)
411 PF10345 Cohesin_load: Cohesin 39.1 6.1E+02 0.013 28.5 34.4 159 136-296 67-251 (608)
412 PRK11619 lytic murein transgly 38.2 6.4E+02 0.014 28.6 31.9 118 388-508 254-374 (644)
413 COG5187 RPN7 26S proteasome re 38.0 4.1E+02 0.0089 26.3 13.2 67 235-301 115-186 (412)
414 COG4259 Uncharacterized protei 37.4 1.5E+02 0.0033 23.8 6.1 33 490-522 81-114 (121)
415 KOG1114 Tripeptidyl peptidase 37.3 7.4E+02 0.016 29.0 14.6 69 428-496 1213-1282(1304)
416 KOG4507 Uncharacterized conser 36.6 1.3E+02 0.0029 32.5 7.5 151 268-422 569-721 (886)
417 PF10579 Rapsyn_N: Rapsyn N-te 36.5 92 0.002 23.9 4.7 44 458-501 18-64 (80)
418 PF11817 Foie-gras_1: Foie gra 35.5 1.8E+02 0.0039 28.2 8.1 55 380-434 183-241 (247)
419 PF12862 Apc5: Anaphase-promot 35.4 2.1E+02 0.0044 22.7 7.1 52 422-473 9-68 (94)
420 KOG4279 Serine/threonine prote 35.3 7.2E+02 0.016 28.3 15.0 64 552-616 371-439 (1226)
421 KOG2034 Vacuolar sorting prote 35.1 7.7E+02 0.017 28.6 26.7 48 174-227 367-416 (911)
422 KOG1924 RhoA GTPase effector D 34.1 91 0.002 34.9 6.0 67 11-88 515-588 (1102)
423 PF12862 Apc5: Anaphase-promot 33.7 2E+02 0.0044 22.8 6.8 21 277-297 48-68 (94)
424 PF11663 Toxin_YhaV: Toxin wit 33.5 41 0.00089 28.7 2.7 21 214-234 109-129 (140)
425 KOG2659 LisH motif-containing 33.3 4.3E+02 0.0093 25.1 9.5 97 373-471 24-128 (228)
426 PF10366 Vps39_1: Vacuolar sor 32.5 2.2E+02 0.0047 23.5 6.9 26 414-439 42-67 (108)
427 PF00244 14-3-3: 14-3-3 protei 32.3 4.6E+02 0.01 25.2 11.0 182 276-474 7-197 (236)
428 cd08780 Death_TRADD Death Doma 32.3 1.6E+02 0.0035 23.1 5.5 54 516-570 34-88 (90)
429 KOG0991 Replication factor C, 31.8 4.7E+02 0.01 25.1 12.5 38 302-340 236-273 (333)
430 cd08819 CARD_MDA5_2 Caspase ac 31.8 2.6E+02 0.0056 22.0 7.1 14 284-297 50-63 (88)
431 cd08819 CARD_MDA5_2 Caspase ac 31.1 2.6E+02 0.0057 22.0 7.0 14 389-402 50-63 (88)
432 KOG2908 26S proteasome regulat 30.9 4.9E+02 0.011 26.4 9.8 87 168-254 78-176 (380)
433 PF09868 DUF2095: Uncharacteri 30.7 1.9E+02 0.0041 23.9 5.8 36 171-207 67-102 (128)
434 PRK09857 putative transposase; 30.7 5.4E+02 0.012 25.7 10.6 65 415-480 210-274 (292)
435 PF10475 DUF2450: Protein of u 30.3 4.2E+02 0.009 26.4 9.9 52 241-298 104-155 (291)
436 PF09477 Type_III_YscG: Bacter 30.0 3.2E+02 0.0069 22.5 8.6 19 387-405 81-99 (116)
437 PF09454 Vps23_core: Vps23 cor 29.9 1.1E+02 0.0024 22.5 4.2 49 233-282 6-54 (65)
438 KOG2391 Vacuolar sorting prote 29.4 6.1E+02 0.013 25.6 12.0 59 196-255 295-353 (365)
439 KOG4567 GTPase-activating prot 29.3 3.1E+02 0.0067 27.4 8.1 43 326-368 264-306 (370)
440 PF06957 COPI_C: Coatomer (COP 29.1 3.5E+02 0.0077 28.5 9.2 40 473-512 290-332 (422)
441 KOG1464 COP9 signalosome, subu 29.0 5.6E+02 0.012 25.0 29.3 202 194-396 20-252 (440)
442 PRK10941 hypothetical protein; 28.9 5.7E+02 0.012 25.2 10.9 55 417-473 187-242 (269)
443 PF10475 DUF2450: Protein of u 28.8 4.6E+02 0.0099 26.2 9.9 52 276-333 104-155 (291)
444 KOG2582 COP9 signalosome, subu 28.8 6.6E+02 0.014 25.8 14.6 251 198-476 73-346 (422)
445 COG2178 Predicted RNA-binding 28.6 4.8E+02 0.01 24.2 9.1 17 457-473 132-148 (204)
446 PF12926 MOZART2: Mitotic-spin 28.6 2.9E+02 0.0063 21.7 8.0 43 256-298 29-71 (88)
447 PRK09462 fur ferric uptake reg 28.5 3.2E+02 0.0069 23.9 7.8 59 331-390 8-67 (148)
448 COG0790 FOG: TPR repeat, SEL1 28.4 5.8E+02 0.013 25.1 25.2 50 213-265 54-107 (292)
449 PF12926 MOZART2: Mitotic-spin 28.3 2.9E+02 0.0064 21.6 7.7 42 186-227 29-70 (88)
450 COG2178 Predicted RNA-binding 28.0 4.9E+02 0.011 24.1 9.0 16 246-261 40-55 (204)
451 PF07575 Nucleopor_Nup85: Nup8 27.7 1E+02 0.0022 34.3 5.5 63 234-298 404-466 (566)
452 KOG0376 Serine-threonine phosp 27.6 1E+02 0.0023 32.5 5.0 101 384-491 13-115 (476)
453 PRK11639 zinc uptake transcrip 27.5 3.3E+02 0.0071 24.6 7.8 36 354-389 39-74 (169)
454 COG5108 RPO41 Mitochondrial DN 27.4 2.9E+02 0.0063 30.6 8.2 91 380-473 33-130 (1117)
455 PF04910 Tcf25: Transcriptiona 27.3 7.1E+02 0.015 25.8 22.6 57 277-333 110-167 (360)
456 KOG0292 Vesicle coat complex C 27.2 3.5E+02 0.0075 31.2 9.0 47 421-473 653-699 (1202)
457 smart00777 Mad3_BUB1_I Mad3/BU 27.1 3.9E+02 0.0085 22.7 9.7 42 429-470 81-123 (125)
458 COG0790 FOG: TPR repeat, SEL1 26.9 6.2E+02 0.013 24.9 24.8 84 176-265 52-143 (292)
459 KOG3677 RNA polymerase I-assoc 26.8 3.8E+02 0.0082 28.0 8.5 61 412-473 236-299 (525)
460 PF09670 Cas_Cas02710: CRISPR- 26.8 7.5E+02 0.016 25.8 12.7 15 354-368 183-197 (379)
461 smart00638 LPD_N Lipoprotein N 26.6 9.2E+02 0.02 26.8 26.0 59 272-335 312-370 (574)
462 PF10366 Vps39_1: Vacuolar sor 26.4 3.7E+02 0.008 22.1 7.6 27 448-474 41-67 (108)
463 PRK08691 DNA polymerase III su 26.3 7.9E+02 0.017 28.0 11.7 46 356-403 180-226 (709)
464 PF11768 DUF3312: Protein of u 25.9 6.9E+02 0.015 27.3 10.7 22 275-296 413-434 (545)
465 COG0735 Fur Fe2+/Zn2+ uptake r 25.9 3.4E+02 0.0074 23.7 7.4 61 293-354 9-69 (145)
466 PF11838 ERAP1_C: ERAP1-like C 25.8 6.8E+02 0.015 25.0 21.2 80 322-404 147-230 (324)
467 PHA03100 ankyrin repeat protei 25.4 4.7E+02 0.01 28.1 10.2 23 174-200 41-63 (480)
468 KOG0686 COP9 signalosome, subu 24.8 8.2E+02 0.018 25.6 14.8 61 237-297 152-214 (466)
469 TIGR02710 CRISPR-associated pr 24.5 8.2E+02 0.018 25.5 11.6 54 173-226 138-197 (380)
470 COG4003 Uncharacterized protei 24.3 2.8E+02 0.0061 21.3 5.4 25 171-195 37-61 (98)
471 PF10255 Paf67: RNA polymerase 24.3 6.3E+02 0.014 26.6 10.0 60 414-473 125-191 (404)
472 PRK09857 putative transposase; 24.2 5.1E+02 0.011 25.9 9.2 63 381-445 212-274 (292)
473 KOG4567 GTPase-activating prot 24.2 3.7E+02 0.008 26.9 7.6 72 220-296 263-344 (370)
474 PF14853 Fis1_TPR_C: Fis1 C-te 24.2 2.6E+02 0.0056 19.6 5.4 16 386-401 12-27 (53)
475 KOG1308 Hsp70-interacting prot 23.5 60 0.0013 32.6 2.4 80 458-540 126-207 (377)
476 PRK00409 recombination and DNA 23.5 1.8E+02 0.0039 33.8 6.6 72 587-669 702-778 (782)
477 KOG0376 Serine-threonine phosp 22.9 1.5E+02 0.0032 31.4 5.1 106 347-458 11-117 (476)
478 PF07720 TPR_3: Tetratricopept 22.9 1.5E+02 0.0032 18.7 3.3 22 550-571 4-25 (36)
479 KOG2908 26S proteasome regulat 22.6 8.3E+02 0.018 24.9 11.3 87 205-291 80-178 (380)
480 PF11817 Foie-gras_1: Foie gra 22.4 5.5E+02 0.012 24.8 8.9 58 415-472 182-244 (247)
481 PRK11639 zinc uptake transcrip 22.1 4.9E+02 0.011 23.4 7.9 20 286-305 41-60 (169)
482 KOG2471 TPR repeat-containing 21.9 2.6E+02 0.0057 29.7 6.5 48 527-575 253-311 (696)
483 PF13934 ELYS: Nuclear pore co 21.8 7E+02 0.015 23.8 14.3 169 392-571 27-197 (226)
484 PF04190 DUF410: Protein of un 21.7 7.6E+02 0.016 24.1 20.2 25 269-293 89-113 (260)
485 PF15297 CKAP2_C: Cytoskeleton 21.6 5.8E+02 0.013 26.0 8.7 76 136-211 110-186 (353)
486 PF09454 Vps23_core: Vps23 cor 21.5 2.5E+02 0.0053 20.7 4.7 46 411-457 8-53 (65)
487 KOG1498 26S proteasome regulat 21.1 9.5E+02 0.021 25.0 17.0 21 311-331 137-157 (439)
488 PF11663 Toxin_YhaV: Toxin wit 21.1 67 0.0015 27.5 1.9 33 175-209 105-137 (140)
489 KOG0403 Neoplastic transformat 21.0 1E+03 0.022 25.3 18.7 61 518-579 513-575 (645)
490 PF10926 DUF2800: Protein of u 20.9 2.4E+02 0.0052 29.3 6.2 53 602-658 264-320 (372)
491 TIGR01228 hutU urocanate hydra 20.8 7.6E+02 0.017 26.5 9.6 174 283-476 207-423 (545)
492 PRK13342 recombination factor 20.6 1E+03 0.022 25.1 19.9 35 353-387 243-277 (413)
493 cd07153 Fur_like Ferric uptake 20.2 2.4E+02 0.0052 23.3 5.2 43 348-390 8-50 (116)
494 KOG0686 COP9 signalosome, subu 20.2 1E+03 0.022 25.0 15.5 167 341-542 151-331 (466)
495 KOG2396 HAT (Half-A-TPR) repea 20.1 1.1E+03 0.024 25.5 25.1 279 182-474 268-558 (568)
496 PF03745 DUF309: Domain of unk 20.1 3.5E+02 0.0076 19.6 5.9 15 248-262 12-26 (62)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-75 Score=660.12 Aligned_cols=587 Identities=18% Similarity=0.276 Sum_probs=515.1
Q ss_pred cccccccchhHHHHHHHhhccCCC---CHhhHHHHHHHhCC---------------CCCHHHHHHHHHh---hCChHHHH
Q 005474 91 KEKSYDTRYNSLVKLAADLDSCSA---TEDDVFSVLRCLGD---------------DFLEQDCVIILNN---MTNPDTAA 149 (695)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~l~~~~~---------------~~~~~~~~~~~~~---~~~~~~A~ 149 (695)
..+...++...+.+++..+..... +......++..+.. .+....+..++.. .++++.|.
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~ 457 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGAL 457 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHH
Confidence 444455677777777777764321 11111112222211 1333333344443 34589999
Q ss_pred HHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhC
Q 005474 150 LALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF 229 (695)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 229 (695)
++|+.|.+.+ +.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|+++|++|.+.
T Consensus 458 ~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 458 RVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 9999998865 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHh
Q 005474 230 GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN--EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 307 (695)
Q Consensus 230 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 307 (695)
|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 9999999999999999999999999999999986 67899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005474 308 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387 (695)
Q Consensus 308 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 387 (695)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 005474 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467 (695)
Q Consensus 388 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 467 (695)
.|++++|.++|++|.+.+. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 697 ~G~~eeA~~lf~eM~~~g~-~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKL-RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999886 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhc-----------------------CCH-HHHHHHHHHHHH--cCCChhHHHHHHh
Q 005474 468 ALNRLPELGITPDDRFCGCLLNVMTQ-----------------------TPK-EELGKLVECVEK--SNSKLGYVVKLLL 521 (695)
Q Consensus 468 ~~~~m~~~g~~pd~~~~~~ll~~~~~-----------------------~~~-~~a~~~~~~~~~--~~p~~~~~~~~l~ 521 (695)
+|++|.+.|+.||..+|++++..|.+ .+. ++|..+|++|.+ +.|+...+..+|
T Consensus 776 l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL- 854 (1060)
T PLN03218 776 LLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVL- 854 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHH-
Confidence 99999999999999999999976542 012 578889999986 558877777777
Q ss_pred hhhcchhhHHHHHHHHHHhcccC---ccccchHHHHHHHHhcCCHHHHHHHHHHHHHcCcccCccccCccceeeccccCC
Q 005474 522 EEQDIEGDFKKEATELFNSISKD---VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLS 598 (695)
Q Consensus 522 ~~~~~~g~~~~eA~~l~~~~~~~---~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~w~~~l~~~s 598 (695)
.++...+ ..+.+..+++.+... ++..+|++|+++|.+. .++|..++++|.+.|+.|++..+.. .|.+|+|.|+
T Consensus 855 ~cl~~~~-~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~~~-~~~~d~~~~~ 930 (1060)
T PLN03218 855 GCLQLPH-DATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFKKS-PIVIDAEELP 930 (1060)
T ss_pred HHhcccc-cHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcccccC-ceEEEcccCc
Confidence 4555555 578889999888544 5566999999998432 4689999999999999999977655 9999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCeeE-EEeecccccccc---------hhHHHHHHHHhhhcCCCCccCCCCcceE
Q 005474 599 LGAALTALHIWINDLSKALESGEEFPPLLG-INTGHGKHKYSD---------KGLASVFESHLKELNAPFHDSPDKVGWF 668 (695)
Q Consensus 599 ~G~~~~a~~~w~~~~~~~~~~g~~~p~~~~-i~~g~~~~~~~~---------~~~~~~i~~~l~~~~~pf~~~~~~~g~~ 668 (695)
.|+|++|+..|++.++.+.+.|.++|.... |.| .++|.+.+ ..+.++|.+||++++.||+.+.+. |||
T Consensus 931 ~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-g~~ 1008 (1060)
T PLN03218 931 VFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPT-EKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPYQGSESH-GKL 1008 (1060)
T ss_pred chhHHHHHHHHHHHHHHHHhccCcCCcceeeecc-ccceeeccCCchhHHHHHHHHHHHHHHHHHhCCCCCCCCCC-CeE
Confidence 999999999999999999999999999998 444 55555543 337899999999999999999999 999
Q ss_pred EEeHHHHHHHhccCCCCc
Q 005474 669 LTTEAAAKSWLESRSSLV 686 (695)
Q Consensus 669 ~~~~~~~~~wl~~~~~~~ 686 (695)
+++|.+++.||+....+.
T Consensus 1009 ~~~~~~~~~wl~~~~~~~ 1026 (1060)
T PLN03218 1009 RINGLSLRRWFQPKLKSP 1026 (1060)
T ss_pred EeccHHHHHHhcccCCCC
Confidence 999999999999987443
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-61 Score=555.83 Aligned_cols=476 Identities=20% Similarity=0.265 Sum_probs=302.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--------------------
Q 005474 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF-------------------- 203 (695)
Q Consensus 144 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-------------------- 203 (695)
+.+.|.++|+.+. .||+++||.+|.+|++.|++++|+++|++|...|+.||..||
T Consensus 136 ~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~ 210 (857)
T PLN03077 136 ELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210 (857)
T ss_pred ChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHH
Confidence 3555555555542 356666666666666666666666666666655555554444
Q ss_pred ---------------HHHHHHHHHcCChhHHHHHHHhc-------------------------------hhCCCCCCHHH
Q 005474 204 ---------------STLISCARMNNLPNKAVEWFERM-------------------------------PSFGCDPDALT 237 (695)
Q Consensus 204 ---------------~~li~~~~~~g~~~~A~~~~~~m-------------------------------~~~g~~p~~~~ 237 (695)
|+||.+|++.|++++|.++|++| .+.|+.||..|
T Consensus 211 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~t 290 (857)
T PLN03077 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290 (857)
T ss_pred HHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 33333444444444444444444 44444444444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 005474 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317 (695)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 317 (695)
|+.+|.+|++.|+.+.|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEK 366 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHh
Confidence 444444444444444444444444444444445555555555555555555555555553 2455555555555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005474 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397 (695)
Q Consensus 318 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 397 (695)
.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.++..+|++||.+|++.|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555555566666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------------------------------
Q 005474 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF----------------------------------- 442 (695)
Q Consensus 398 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------------------------------- 442 (695)
|++|.+ +|..+|+.+|.+|++.|+.++|.++|++|.+ ++
T Consensus 447 f~~m~~-----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 447 FHNIPE-----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHhCCC-----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 666643 2333444444444444444444444444432 12
Q ss_pred ------------------------------CCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 005474 443 ------------------------------EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 492 (695)
Q Consensus 443 ------------------------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~ 492 (695)
.+|..+|+++|.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|.
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 35667788999999999999999999999999999999999999999999
Q ss_pred cCCH-HHHHHHHHHHHH---cCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccCccccchHHHHHHHHhcCCHHHHHH
Q 005474 493 QTPK-EELGKLVECVEK---SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 568 (695)
Q Consensus 493 ~~~~-~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ 568 (695)
+.|. +++.++|+.|.+ +.|+.. .++.+...+.+.| +++||.+++++|+..|+..+|++|+.+|..+|+.+.|+.
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~-~y~~lv~~l~r~G-~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLK-HYACVVDLLGRAG-KLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchH-HHHHHHHHHHhCC-CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 9999 999999999984 467632 2233333334447 899999999999999999999999999999999999998
Q ss_pred HHHHHHHcCcc--------cCccccCccceeeccccCChHHHHHHHHHHHHHHHHH-HhcC-CCCCCeeEEEeecccccc
Q 005474 569 LLELGLTLEVY--------TDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA-LESG-EEFPPLLGINTGHGKHKY 638 (695)
Q Consensus 569 ~l~~~~~~~~~--------~~~~~~~~~~w~~~l~~~s~G~~~~a~~~w~~~~~~~-~~~g-~~~p~~~~i~~g~~~~~~ 638 (695)
..++..+.... .|+|+ ..+.|. + ...+|+. .++| ++.|+++||+.+...|.|
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya-~~g~~~------------~-----a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f 740 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYA-DAGKWD------------E-----VARVRKTMRENGLTVDPGCSWVEVKGKVHAF 740 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHH-HCCChH------------H-----HHHHHHHHHHcCCCCCCCccEEEECCEEEEE
Confidence 88888764321 12222 234444 2 3344444 4567 999999999999999998
Q ss_pred cc----hhHHHHHHHHhhhc
Q 005474 639 SD----KGLASVFESHLKEL 654 (695)
Q Consensus 639 ~~----~~~~~~i~~~l~~~ 654 (695)
.. |+..+.|+..|.++
T Consensus 741 ~~~d~~h~~~~~i~~~l~~l 760 (857)
T PLN03077 741 LTDDESHPQIKEINTVLEGF 760 (857)
T ss_pred ecCCCCCcchHHHHHHHHHH
Confidence 64 77778888777654
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.7e-61 Score=540.18 Aligned_cols=487 Identities=16% Similarity=0.245 Sum_probs=436.7
Q ss_pred HHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 005474 139 LNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218 (695)
Q Consensus 139 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 218 (695)
+...+++++|+++|+++....+..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+||.++.+|++.|++++
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~ 176 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID 176 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHH
Confidence 34456689999999999987667899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 219 AVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 219 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..+.+
T Consensus 177 A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 177 ARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred HHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 9999999974 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 005474 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378 (695)
Q Consensus 299 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 378 (695)
.|+.||..+|++||++|++.|++++|.++|++|.. +|.++|++||.+|++.|+.++|.++|++|.+.|+.||..+|
T Consensus 253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999964 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005474 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458 (695)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 458 (695)
++++.+|++.|++++|.+++..|.+.|. .||..+|++||++|+++|++++|.++|++|.+ ||..+|++||.+|++
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHH
Confidence 9999999999999999999999999996 99999999999999999999999999999965 899999999999999
Q ss_pred cCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHH---cCCC---hhHHHHHHhhhhcchhhHH
Q 005474 459 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK---SNSK---LGYVVKLLLEEQDIEGDFK 531 (695)
Q Consensus 459 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~---~~p~---~~~~~~~l~~~~~~~g~~~ 531 (695)
+|+.++|+++|++|.+.|+.||..||+.++.+|.+.|. +++.++|+.|.+ ..|+ +.++++.|++ .| .+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r----~G-~~ 478 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----EG-LL 478 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----cC-CH
Confidence 99999999999999999999999999999999999999 999999999975 4565 3345555555 47 89
Q ss_pred HHHHHHHHhcccCccccchHHHHHHHHhcCCHHHHHHHHHHHHHcCcccC-ccccCccceeecccc-CChHHHHHHHHHH
Q 005474 532 KEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKS-LSLGAALTALHIW 609 (695)
Q Consensus 532 ~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~~~~~~~w~~~l~~-~s~G~~~~a~~~w 609 (695)
++|.+++++++..|+..+|++|+.+|..+|+++.|+++++++.+.+ |+ +.. +.+.+.. ...|..++|...+
T Consensus 479 ~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~--p~~~~~-----y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 479 DEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG--PEKLNN-----YVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC--CCCCcc-----hHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999987554 33 111 1111111 1346666665543
Q ss_pred HHHHHHHHhcC-CCCCCeeEEEeecccccccc----hhHHHHHHHHhhhc
Q 005474 610 INDLSKALESG-EEFPPLLGINTGHGKHKYSD----KGLASVFESHLKEL 654 (695)
Q Consensus 610 ~~~~~~~~~~g-~~~p~~~~i~~g~~~~~~~~----~~~~~~i~~~l~~~ 654 (695)
.. + ...| .+.|+..||+.+...|.|.. |+..+.|+..|.++
T Consensus 552 ~~-m---~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l 597 (697)
T PLN03081 552 ET-L---KRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDEL 597 (697)
T ss_pred HH-H---HHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHH
Confidence 32 2 3467 88999999999999999864 66666666665543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-58 Score=522.58 Aligned_cols=450 Identities=17% Similarity=0.264 Sum_probs=372.3
Q ss_pred CCHHHHHHHHHhh---CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005474 130 FLEQDCVIILNNM---TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL 206 (695)
Q Consensus 130 ~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 206 (695)
......+.+++.+ +++++|+++|++|...+...++...++.++.+|.+.|.+++|..+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 3344455555655 568889999988887765667888888888888888888888888888863 788888888
Q ss_pred HHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 005474 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286 (695)
Q Consensus 207 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 286 (695)
|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 005474 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD--NGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364 (695)
Q Consensus 287 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 364 (695)
++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888875 5778888888888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 005474 365 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 444 (695)
Q Consensus 365 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 444 (695)
+|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|. .||..+|+.+|++|++.|++++|.++|++|.+.|+.|
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv-~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV-KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 888888888888888888888888888888888888888885 8888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHH--cCCChhHHHHHHh
Q 005474 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK--SNSKLGYVVKLLL 521 (695)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~--~~p~~~~~~~~l~ 521 (695)
|..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+ ++|.++|+.|.. ..|+...+.. |.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s-LL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI-LL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HH
Confidence 8888888888888888888888888888888888888888888888888888 888888888875 4566544433 33
Q ss_pred hhhcchhhHHHHHHHHHHhcc---cCccccchHHHHHHHHh-----------------------cCCHHHHHHHHHHHHH
Q 005474 522 EEQDIEGDFKKEATELFNSIS---KDVKKAYCNCLIDLCVN-----------------------LNLLENACKLLELGLT 575 (695)
Q Consensus 522 ~~~~~~g~~~~eA~~l~~~~~---~~~~~~~~~~L~~~~~~-----------------------~g~~~~A~~~l~~~~~ 575 (695)
..+.+.| .+++|.++++.|. ..|+..+|++|++.|.+ .+..++|..+|++|.+
T Consensus 762 ~a~~k~G-~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 762 VASERKD-DADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 5556667 7888888888773 45777788888876543 1234679999999999
Q ss_pred cCcccCccccC
Q 005474 576 LEVYTDIQSRS 586 (695)
Q Consensus 576 ~~~~~~~~~~~ 586 (695)
.|+.||..+..
T Consensus 841 ~Gi~Pd~~T~~ 851 (1060)
T PLN03218 841 AGTLPTMEVLS 851 (1060)
T ss_pred CCCCCCHHHHH
Confidence 99999976643
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.9e-56 Score=502.60 Aligned_cols=425 Identities=16% Similarity=0.222 Sum_probs=395.2
Q ss_pred HhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 005474 140 NNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219 (695)
Q Consensus 140 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 219 (695)
...++.+.|.+++..+.+.+ +.||..+||.++.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|
T Consensus 134 ~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A 208 (697)
T PLN03081 134 IALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREA 208 (697)
T ss_pred HhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHH
Confidence 34455788999999988765 88999999999999999999999999999996 47999999999999999999999
Q ss_pred HHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005474 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299 (695)
Q Consensus 220 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 299 (695)
+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.+|..+|++||.+|++.|++++|.++|++|..
T Consensus 209 ~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~- 287 (697)
T PLN03081 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE- 287 (697)
T ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 005474 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379 (695)
Q Consensus 300 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 379 (695)
+|+++||+||.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|+
T Consensus 288 ---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~ 364 (697)
T PLN03081 288 ---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364 (697)
T ss_pred ---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005474 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459 (695)
Q Consensus 380 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 459 (695)
+||.+|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999996 5789999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHhhh-CCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHH
Q 005474 460 QRTDDVVRALNRLPE-LGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 537 (695)
Q Consensus 460 g~~~~A~~~~~~m~~-~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l 537 (695)
|.+++|.++|+.|.+ .|+.|+..+|+++++++.+.|. ++|.++++++. ..|+. .+++.|..++...| .++.|...
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p~~-~~~~~Ll~a~~~~g-~~~~a~~~ 516 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKPTV-NMWAALLTACRIHK-NLELGRLA 516 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCCCH-HHHHHHHHHHHHcC-CcHHHHHH
Confidence 999999999999985 7999999999999999999999 99999998763 45654 34566666666667 78999998
Q ss_pred HHhc-ccCcc-ccchHHHHHHHHhcCCHHHHHHHHHHHHHcCcccC
Q 005474 538 FNSI-SKDVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 581 (695)
Q Consensus 538 ~~~~-~~~~~-~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~ 581 (695)
++.+ ...|+ ...|..|+++|.+.|++++|.+++++|.+.|+...
T Consensus 517 ~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 517 AEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 8776 44454 55899999999999999999999999999987643
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-54 Score=497.66 Aligned_cols=446 Identities=18% Similarity=0.211 Sum_probs=310.6
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 005474 142 MTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221 (695)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 221 (695)
....+.|.+++..+.+.. ..+++..+|++|..|++.|+++.|.++|++|. +||..+||++|.+|++.|++++|++
T Consensus 99 ~~~~~~a~~~~~~~~~~~-~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~ 173 (857)
T PLN03077 99 KRAVEEGSRVCSRALSSH-PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALC 173 (857)
T ss_pred CCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHH
Confidence 344778899999888765 67899999999999999999999999999997 4699999999999999999999999
Q ss_pred HHHhchhCCCCCCHHHHHHHHHHH-----------------------------------HhcCCHHHHHHHHHHHhhCCC
Q 005474 222 WFERMPSFGCDPDALTYSSMIDAY-----------------------------------GRAGNVEMAFGLYDRARNEKW 266 (695)
Q Consensus 222 ~~~~m~~~g~~p~~~~~~~li~~~-----------------------------------~~~g~~~~A~~~~~~~~~~g~ 266 (695)
+|++|...|+.||..||+.++++| ++.|++++|.++|++|.
T Consensus 174 ~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~---- 249 (857)
T PLN03077 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP---- 249 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----
Confidence 999999989988888776555554 55555555555555554
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005474 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346 (695)
Q Consensus 267 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 346 (695)
.+|.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+.|.+++..|.+.|+.||..+|++|
T Consensus 250 ~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~L 329 (857)
T PLN03077 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329 (857)
T ss_pred CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHH
Confidence 24555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCC
Q 005474 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426 (695)
Q Consensus 347 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 426 (695)
|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|+++|++|.+.|. .||..||+.++.+|++.|+
T Consensus 330 i~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~-~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 330 IQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNV-SPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CCCceeHHHHHHHHhccch
Confidence 6666666666666666666542 3556666666666666666666666666666664 6666666666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 005474 427 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 505 (695)
Q Consensus 427 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~ 505 (695)
+++|.++++.|.+.|+.|+..+|++||++|++.|++++|.++|++|.+ +|..+|+.++.+|.+.|. ++|.++|++
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666642 344555555555555555 555555555
Q ss_pred HHH-cCCChhHHH----------------------------------HHHhhhhcchhhHHHHHHHHHHhcccCccccch
Q 005474 506 VEK-SNSKLGYVV----------------------------------KLLLEEQDIEGDFKKEATELFNSISKDVKKAYC 550 (695)
Q Consensus 506 ~~~-~~p~~~~~~----------------------------------~~l~~~~~~~g~~~~eA~~l~~~~~~~~~~~~~ 550 (695)
|.. ..|+...+. +.|...|.+.| .+++|.++|+.+ .++..+|
T Consensus 481 m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G-~~~~A~~~f~~~--~~d~~s~ 557 (857)
T PLN03077 481 MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG-RMNYAWNQFNSH--EKDVVSW 557 (857)
T ss_pred HHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC-CHHHHHHHHHhc--CCChhhH
Confidence 543 344443322 33445666667 788999998888 7788899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCcccCccccCccceeeccccC-ChHHHHHHHHHHHHHH
Q 005474 551 NCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSL-SLGAALTALHIWINDL 613 (695)
Q Consensus 551 ~~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~w~~~l~~~-s~G~~~~a~~~w~~~~ 613 (695)
|+|+.+|+++|+.++|.++|++|.+.|+.||..+... -+... ..|.-++|...+....
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~-----ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS-----LLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH-----HHHHHhhcChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999766421 22222 3466666666654443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=6.5e-25 Score=258.74 Aligned_cols=454 Identities=15% Similarity=0.079 Sum_probs=378.7
Q ss_pred HHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 005474 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217 (695)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 217 (695)
.+...+++++|..+++.+... .+.+..+|+.+..++...|++++|.+.|+++.+.. +.+...+..+...+...|+++
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 334456689999999988775 34577789999999999999999999999998763 335667778888999999999
Q ss_pred HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005474 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297 (695)
Q Consensus 218 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 297 (695)
+|.+.|+++.+.+ +.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..|.+.|++++|.++++++.
T Consensus 517 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 517 DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998754 4478889999999999999999999999998765 5567788899999999999999999999998
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 005474 298 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377 (695)
Q Consensus 298 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 377 (695)
+.. +.+...|..+...+.+.|++++|...|+.+.+.. +.+...+..+...|.+.|++++|..+|+++.+.... +...
T Consensus 595 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 671 (899)
T TIGR02917 595 DAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEA 671 (899)
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHH
Confidence 764 4477889999999999999999999999998764 346778888999999999999999999999876433 6788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005474 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457 (695)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 457 (695)
+..++..+...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|.+.|+++.+.+ |+..++..++.++.
T Consensus 672 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 747 (899)
T TIGR02917 672 QIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHH
Confidence 9999999999999999999999998876 5788889999999999999999999999999854 55578888999999
Q ss_pred HcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHH
Q 005474 458 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536 (695)
Q Consensus 458 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~ 536 (695)
+.|++++|...++++.+.. ..+...+..+...+...|+ ++|.+.|+++.+..|++..+...+++.+...| . ++|.+
T Consensus 748 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~-~~A~~ 824 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK-D-PRALE 824 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-c-HHHHH
Confidence 9999999999999998653 2356678888888888998 99999999999999999999999999888888 4 77999
Q ss_pred HHHhc-ccCcc-ccchHHHHHHHHhcCCHHHHHHHHHHHHHcCcc-cCccccCccceeeccccCChHHHHHHHHHHHHH
Q 005474 537 LFNSI-SKDVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLEVY-TDIQSRSPTQWSLHLKSLSLGAALTALHIWIND 612 (695)
Q Consensus 537 l~~~~-~~~~~-~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~~-~~~~~~~~~~w~~~l~~~s~G~~~~a~~~w~~~ 612 (695)
+++++ ...|+ ..+++.++.++...|++++|.++++++++.+.. +.++.. +-......|..++|...+.+.
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~------l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 825 YAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYH------LALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH------HHHHHHHcCCHHHHHHHHHHH
Confidence 98876 33343 447889999999999999999999999987643 122211 000112357777777766554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.2e-24 Score=256.39 Aligned_cols=424 Identities=13% Similarity=0.068 Sum_probs=369.3
Q ss_pred HHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 005474 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216 (695)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 216 (695)
.++...+++++|.+.|+.+.... +.+...+..+...+...|++++|.+.|+.+.+.+ +.+..++..+...+.+.|+.
T Consensus 473 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 549 (899)
T TIGR02917 473 AIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNE 549 (899)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCH
Confidence 34555677999999999988753 3456778889999999999999999999998764 34778889999999999999
Q ss_pred hHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005474 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296 (695)
Q Consensus 217 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 296 (695)
++|..+|+++.+.+ +.+...+..++..|.+.|++++|..+++++.+.. +.+..+|..+...|.+.|++++|++.|+++
T Consensus 550 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 627 (899)
T TIGR02917 550 EEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627 (899)
T ss_pred HHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998754 4467788899999999999999999999998754 667889999999999999999999999999
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 005474 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376 (695)
Q Consensus 297 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 376 (695)
.+.. +.+...+..+...+.+.|++++|..+++++.+.. +.+..++..++..+...|++++|.++++.+.+.+. .+..
T Consensus 628 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 704 (899)
T TIGR02917 628 LALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAAL 704 (899)
T ss_pred HHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChH
Confidence 8764 2367788899999999999999999999998764 34678899999999999999999999999988764 4677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005474 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456 (695)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 456 (695)
.+..+...+...|++++|...|+.+.... |+..++..+...+.+.|+.++|.+.++++.+.. +.+...+..+...|
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~ 780 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRA---PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELY 780 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 88889999999999999999999998854 555788889999999999999999999999854 34788999999999
Q ss_pred HHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHH
Q 005474 457 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536 (695)
Q Consensus 457 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~ 536 (695)
.+.|++++|...|+++.+.. ..+...+..+...+...|+.+|..+++++....|++..++..+|..+...| ..++|.+
T Consensus 781 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~ 858 (899)
T TIGR02917 781 LAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKG-EADRALP 858 (899)
T ss_pred HHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC-CHHHHHH
Confidence 99999999999999999763 236678888888888888877999999999999999999999999888888 8999999
Q ss_pred HHHhcc-cCc-cccchHHHHHHHHhcCCHHHHHHHHHHHH
Q 005474 537 LFNSIS-KDV-KKAYCNCLIDLCVNLNLLENACKLLELGL 574 (695)
Q Consensus 537 l~~~~~-~~~-~~~~~~~L~~~~~~~g~~~~A~~~l~~~~ 574 (695)
+++++- ..| +..++..+++++++.|+.++|.+++++++
T Consensus 859 ~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 859 LLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 998873 333 55688999999999999999999999876
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.1e-20 Score=199.94 Aligned_cols=311 Identities=15% Similarity=0.115 Sum_probs=238.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCC---HHHHHHHHHHHHhc
Q 005474 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD---ALTYSSMIDAYGRA 248 (695)
Q Consensus 172 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~ 248 (695)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|+++++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344667889999999999998763 23556788888888999999999999998887532221 25678888889999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCChHHH
Q 005474 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTMGRAKRPWQV 324 (695)
Q Consensus 249 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a 324 (695)
|++++|..+|+++.+.. +.+..+++.++..|.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999988753 456778889999999999999999999998876533321 2345666777888899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 005474 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404 (695)
Q Consensus 325 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 404 (695)
.+.|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99988887754 23456777788888888899999988888887643333456777888888888898888888888774
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHhHHHHHHHHhhhCCCCCCH
Q 005474 405 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK---AQRTDDVVRALNRLPELGITPDD 481 (695)
Q Consensus 405 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~ 481 (695)
.|+...+..++..+.+.|++++|.++++++.+. .|+...++.++..+.. .|+.++++.++++|.+.++.|+.
T Consensus 279 ---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 ---YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred ---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 356666688888888888888888888888774 5888888888877664 55888888888888877777665
Q ss_pred HHHHHHHHHHhcCCH
Q 005474 482 RFCGCLLNVMTQTPK 496 (695)
Q Consensus 482 ~~~~~ll~~~~~~~~ 496 (695)
. ..|.++|.
T Consensus 354 ~------~~c~~cg~ 362 (389)
T PRK11788 354 R------YRCRNCGF 362 (389)
T ss_pred C------EECCCCCC
Confidence 5 34666654
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=4.5e-18 Score=202.03 Aligned_cols=429 Identities=12% Similarity=0.022 Sum_probs=268.0
Q ss_pred HHhhCChHHHHHHHHHHHhcCCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 005474 139 LNNMTNPDTAALALTYFTNKLKASKEVI-LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217 (695)
Q Consensus 139 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 217 (695)
+...+++++|.+.|+.+.... +++.. ............|+.++|++.|+++.+.. +-+...+..+...+...|+.+
T Consensus 122 l~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 122 LATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHH
Confidence 344456777777777765542 22221 11111111223467777777777776652 224445555556666677777
Q ss_pred HHHHHHHhchhCCC------------------C--------------CCHHH---------------------HHHHHHH
Q 005474 218 KAVEWFERMPSFGC------------------D--------------PDALT---------------------YSSMIDA 244 (695)
Q Consensus 218 ~A~~~~~~m~~~g~------------------~--------------p~~~~---------------------~~~li~~ 244 (695)
+|++.|+++.+... . |+... .......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 77777666543210 0 00000 0011234
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHhHH------------HH
Q 005474 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-NMITYN------------NL 311 (695)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~------------~l 311 (695)
+...|++++|+..|++.++.. +-+..++..+...|.+.|++++|+..|++..+..... +...|. ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 556677777777777777653 3466777777777777778888877777776653221 111111 12
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH-------------
Q 005474 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY------------- 378 (695)
Q Consensus 312 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~------------- 378 (695)
...+.+.|++++|...|+++.+... .+...+..+...|...|++++|++.|++..+.... +...+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHH
Confidence 3345677777777777777776532 34555666777777777777777777777654322 22222
Q ss_pred -----------------------------HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005474 379 -----------------------------NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429 (695)
Q Consensus 379 -----------------------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 429 (695)
..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH
Confidence 123344556788888888888887754 4466777788888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCC---------------------------------
Q 005474 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG--------------------------------- 476 (695)
Q Consensus 430 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------------------------- 476 (695)
|...++++.+... .+...+..+...+...|+.++|+..++++....
T Consensus 514 A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 8888888876321 133333333333334444444444443321100
Q ss_pred -----CCC-CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhccc-Ccc-c
Q 005474 477 -----ITP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DVK-K 547 (695)
Q Consensus 477 -----~~p-d~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~-~~~-~ 547 (695)
..| +...+..+...+.+.|+ ++|...++.+.+.+|++..+...++..+...| ..++|.+.++.+.. .|+ .
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g-~~~eA~~~l~~ll~~~p~~~ 671 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQG-DLAAARAQLAKLPATANDSL 671 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhccCCCCh
Confidence 122 33455566677778888 99999999999999999999999998888888 88999999987743 333 3
Q ss_pred cchHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 548 AYCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 548 ~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
.++..++.++...|++++|.+++++++...
T Consensus 672 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 672 NTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 467788999999999999999999998754
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=8.6e-18 Score=199.61 Aligned_cols=420 Identities=11% Similarity=0.022 Sum_probs=320.3
Q ss_pred HhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHH------------H
Q 005474 140 NNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKP-DNVTFST------------L 206 (695)
Q Consensus 140 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~------------l 206 (695)
...+++++|+..|+.+.+.. +.+...+..+..++.+.|++++|+..|++..+..... +...|.. .
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 34566899999999888753 3467788889999999999999999999988753221 1111211 1
Q ss_pred HHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 005474 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF 286 (695)
Q Consensus 207 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 286 (695)
...+.+.|++++|++.|+++.+.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...|. .++.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCH
Confidence 235678899999999999988753 3356778888899999999999999999998764 445667777777774 4678
Q ss_pred HHHHHHHHHHHHcCCC--------CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHH
Q 005474 287 DGCLNVYEEMKAIGVK--------PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 358 (695)
Q Consensus 287 ~~A~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 358 (695)
++|+.+++.+...... .....+..+...+...|++++|.+.|++..+... -+...+..+...|.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 9998888765432100 0122355567788899999999999999988643 256677788899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHH---------HHHHHHHHHHHcCCHHH
Q 005474 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW---------TFSSMITICSCRGKVSE 429 (695)
Q Consensus 359 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~---------~~~~li~~~~~~g~~~~ 429 (695)
|...|+++.+.... +...+..+...+...|+.++|+..++.+..... .++.. .+..+...+...|+.++
T Consensus 514 A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~-~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 514 ADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQW-NSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhc-ChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 99999999876433 444555555667788999999999998764331 22221 12345667889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 005474 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVECVE 507 (695)
Q Consensus 430 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~-~~a~~~~~~~~ 507 (695)
|.++++. .+.+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|+ ++|.+.++.+.
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9999872 2346677788899999999999999999999865 45 46678888889999999 99999999999
Q ss_pred HcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhccc-Ccc-c------cchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005474 508 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DVK-K------AYCNCLIDLCVNLNLLENACKLLELGLT 575 (695)
Q Consensus 508 ~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~-~~~-~------~~~~~L~~~~~~~g~~~~A~~~l~~~~~ 575 (695)
+..|++..+...++..+...| ..++|.++++++.. .++ . .++..++.++...|+.++|...+++++.
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALG-DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999998888888888887778 88999999988732 221 1 2566678899999999999999999974
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=1.2e-18 Score=184.24 Aligned_cols=298 Identities=16% Similarity=0.113 Sum_probs=242.9
Q ss_pred HHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcC
Q 005474 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID---PNAFSTLIKLYGTAG 284 (695)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g 284 (695)
..+...|++++|+..|+++.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++ ..++..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34567899999999999999863 33567899999999999999999999999987542221 256788899999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCChHHHH
Q 005474 285 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW----NTYASLLRAYGRARYGEDTL 360 (695)
Q Consensus 285 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~ 360 (695)
++++|+.+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999998763 346788999999999999999999999999886543322 24556777889999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005474 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440 (695)
Q Consensus 361 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 440 (695)
..|+++.+.... +...+..+...|.+.|++++|.++++++.+.+. .....+++.++.+|.+.|++++|.+.++++.+.
T Consensus 201 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 201 ALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDP-EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999876432 566778888999999999999999999987542 222467889999999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc---CCH-HHHHHHHHHHH----HcCCC
Q 005474 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ---TPK-EELGKLVECVE----KSNSK 512 (695)
Q Consensus 441 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~---~~~-~~a~~~~~~~~----~~~p~ 512 (695)
.|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|. +++..+++.+. +.+|+
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 466677788999999999999999999998865 7999999888876653 335 67777776665 34555
Q ss_pred h
Q 005474 513 L 513 (695)
Q Consensus 513 ~ 513 (695)
+
T Consensus 355 ~ 355 (389)
T PRK11788 355 Y 355 (389)
T ss_pred E
Confidence 3
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=5.9e-18 Score=170.40 Aligned_cols=367 Identities=16% Similarity=0.132 Sum_probs=182.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHH-HHHH
Q 005474 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS-SMID 243 (695)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~ 243 (695)
..+|..+..++...|++++|+.+++.+++.. +-....|..+..++...|+.+.|.+.|.+..+ +.|+..... .+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhH
Confidence 4445555555555555555555555555441 11334455555555555555555555555544 234333222 2223
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCChH
Q 005474 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPW 322 (695)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 322 (695)
.....|++++|..-|.+.++.. +--.++|+.|...+-..|+...|++.|++.... .|+ ...|-.|...|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 3333455555555555555432 222344555555555555555555555555543 232 344555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 005474 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402 (695)
Q Consensus 323 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 402 (695)
.|...+.+...... -..+.+..+...|...|.+|.|++.|++.++.... -...|+.|..++-..|+..+|.+.|.+..
T Consensus 270 ~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 55555555444221 12344444445555555555555555555544222 23445555555555555555555555554
Q ss_pred hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCH
Q 005474 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481 (695)
Q Consensus 403 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 481 (695)
... .......+.|...|...|++++|..+|....+ +.|. ...++.|...|-+.|++++|+..+++.+ .+.|+.
T Consensus 348 ~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~f 421 (966)
T KOG4626|consen 348 RLC--PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTF 421 (966)
T ss_pred HhC--CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCchH
Confidence 432 33344455555555555555555555555554 2232 2344555555555555555555555554 344543
Q ss_pred H-HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCcc
Q 005474 482 R-FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVK 546 (695)
Q Consensus 482 ~-~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~ 546 (695)
. .|+-+.+.|...|+ ..|.+.+..++.++|....+-+.|+..+-+.| ...+|++-++.. ..+||
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsG-ni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSG-NIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccC-CcHHHHHHHHHHHccCCC
Confidence 2 34445555555555 55555555555555555555555555544444 445555544332 33444
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=5.2e-18 Score=170.76 Aligned_cols=415 Identities=14% Similarity=0.146 Sum_probs=303.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005474 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223 (695)
Q Consensus 144 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 223 (695)
++.+|.+-........ +-+....-.+-..+.+..+.+....--....+. .+.-..+|..+.+.+...|++++|+.++
T Consensus 63 d~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~y 139 (966)
T KOG4626|consen 63 DYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALALY 139 (966)
T ss_pred CHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 4555655555443332 112222333344556666666655443333333 2334678888888888888888998888
Q ss_pred HhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHcCC
Q 005474 224 ERMPSFGCDP-DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFST-LIKLYGTAGNFDGCLNVYEEMKAIGV 301 (695)
Q Consensus 224 ~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~ 301 (695)
+.+.+. .| .+..|..+..++...|+.+.|.+.|.+.++. .|+.....+ +....-..|+.++|...|.+.++..
T Consensus 140 ~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q- 214 (966)
T KOG4626|consen 140 RAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ- 214 (966)
T ss_pred HHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-
Confidence 888874 34 5778888888888888888888888888765 455554433 4444555788888888888877753
Q ss_pred CCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 005474 302 KPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379 (695)
Q Consensus 302 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 379 (695)
|. .+.|+.|...+...|+...|+..|++..+. .|+ ...|-.|...|...+.++.|...|.+....... ..+.+.
T Consensus 215 -p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~g 290 (966)
T KOG4626|consen 215 -PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHG 290 (966)
T ss_pred -CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhcc
Confidence 33 567888888888888888888888888774 344 456777888888888888888888877665322 456677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHH
Q 005474 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGK 458 (695)
Q Consensus 380 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~ 458 (695)
.|...|-..|.++-|++.|++..+.. +.-...|+.|..++-..|++.+|.+.++..... .| -....+.|...|..
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYRE 366 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHH
Confidence 78888888888999998888888754 334677888888888889999998888888874 34 45677788888888
Q ss_pred cCCHhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHH
Q 005474 459 AQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 536 (695)
Q Consensus 459 ~g~~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~ 536 (695)
.|.+++|..+|....+ +.|+-. .++-|...|-+.|+ ++|...++.+.++.|.....++.+|..+-+.| ..++|.+
T Consensus 367 ~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g-~v~~A~q 443 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG-DVSAAIQ 443 (966)
T ss_pred hccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh-hHHHHHH
Confidence 8889999888888774 456543 57777777888888 88888888888888888888888888887777 7788888
Q ss_pred HHHhc-ccCccc-cchHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 537 LFNSI-SKDVKK-AYCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 537 l~~~~-~~~~~~-~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
.+.+. ...|.- ...+.|+.++...|+..+|+.-++.+++..
T Consensus 444 ~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 444 CYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 87654 445543 366788888888899888888888887653
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=5.9e-17 Score=180.72 Aligned_cols=399 Identities=13% Similarity=0.047 Sum_probs=294.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 005474 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245 (695)
Q Consensus 166 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 245 (695)
..+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34667788899999999999999998875 6788889889999999999999999999988753 23577889999999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------------------------
Q 005474 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-------------------------- 299 (695)
Q Consensus 246 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------------- 299 (695)
...|++++|+..|..+...+- .+......++..+.......++...++.-...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 999999999998887765431 22222222222222111112222221110000
Q ss_pred -CCCCCH-HhHHHHHHH---HHhcCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 005474 300 -GVKPNM-ITYNNLLDT---MGRAKRPWQVKTIYKEMTDNG-LSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 372 (695)
Q Consensus 300 -g~~p~~-~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 372 (695)
...++. ..+..+... ....+++++|.+.|+...+.+ ..| +...+..+...+...|++++|+..|++..+....
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 363 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR 363 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 000000 000000000 122367899999999998764 223 4566788888899999999999999999886432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 005474 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTS 451 (695)
Q Consensus 373 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ 451 (695)
+...|..+...+...|++++|+..|+++.+.. +.+...|..+...+...|++++|...|++.++.. | +...+..
T Consensus 364 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~ 438 (615)
T TIGR00990 364 -VTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQ 438 (615)
T ss_pred -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHH
Confidence 45678888899999999999999999998765 5678899999999999999999999999999853 4 5777888
Q ss_pred HHHHHHHcCCHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHH----HHHhh--h
Q 005474 452 LIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV----KLLLE--E 523 (695)
Q Consensus 452 li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~----~~l~~--~ 523 (695)
+...+.+.|++++|+..|++.++. .| +...+..+..++...|+ ++|.+.+++...++|+..... .+++. .
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 889999999999999999998854 45 45678888888899998 999999999999988743221 11111 1
Q ss_pred hcc-hhhHHHHHHHHHHhc-ccCcccc-chHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005474 524 QDI-EGDFKKEATELFNSI-SKDVKKA-YCNCLIDLCVNLNLLENACKLLELGLTL 576 (695)
Q Consensus 524 ~~~-~g~~~~eA~~l~~~~-~~~~~~~-~~~~L~~~~~~~g~~~~A~~~l~~~~~~ 576 (695)
+.. .| .+++|.+++++. ...|+.. .+..|+.++...|++++|.++|+++.+.
T Consensus 517 ~~~~~~-~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 517 LFQWKQ-DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 112 35 789999999775 4455544 6889999999999999999999998765
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=8.5e-17 Score=179.42 Aligned_cols=393 Identities=9% Similarity=-0.017 Sum_probs=287.2
Q ss_pred HHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 005474 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217 (695)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 217 (695)
.+...++++.|+..|+.+... .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|...|+++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 334456799999999998764 5778889999999999999999999999998763 235667888888999999999
Q ss_pred HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---------------------C----CCCCHHH
Q 005474 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE---------------------K----WRIDPNA 272 (695)
Q Consensus 218 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------g----~~~~~~~ 272 (695)
+|+..|......+-..+.. ...++.-+........+...++.-... + ...+...
T Consensus 212 eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 9999887765432111222 222222211111112222221110000 0 0000000
Q ss_pred HHHHHHHH------HHcCChHHHHHHHHHHHHcC-CCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005474 273 FSTLIKLY------GTAGNFDGCLNVYEEMKAIG-VKP-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344 (695)
Q Consensus 273 ~~~li~~~------~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 344 (695)
-..++..+ ...+++++|++.|++..+.+ ..| +...|+.+...+...|++++|...+++..+... .+...|.
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~ 369 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYI 369 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHH
Confidence 00011111 12368999999999998764 223 456788888889999999999999999988542 2456788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHc
Q 005474 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424 (695)
Q Consensus 345 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 424 (695)
.+...+...|++++|...|++..+.... +...|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHC
Confidence 8899999999999999999999887533 67788889999999999999999999998865 56778888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH------HHHHHHHHHhcCCH-H
Q 005474 425 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR------FCGCLLNVMTQTPK-E 497 (695)
Q Consensus 425 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~------~~~~ll~~~~~~~~-~ 497 (695)
|++++|...|++..+.. +.+...|+.+...+...|++++|+..|++..+.....+.. .++..+..+...|+ +
T Consensus 447 g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 447 GSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 99999999999998742 2367889999999999999999999999988543221111 12222222333567 9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc
Q 005474 498 ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 541 (695)
Q Consensus 498 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~ 541 (695)
+|.++++++..++|+...+...+|..+...| ..++|.+++++.
T Consensus 526 eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g-~~~eAi~~~e~A 568 (615)
T TIGR00990 526 EAENLCEKALIIDPECDIAVATMAQLLLQQG-DVDEALKLFERA 568 (615)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHH
Confidence 9999999999999999888889999998888 899999998775
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=6.6e-17 Score=179.70 Aligned_cols=320 Identities=8% Similarity=-0.024 Sum_probs=176.3
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 005474 143 TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEW 222 (695)
Q Consensus 143 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 222 (695)
+++.+|+.+++...... +.+...+..++.++...|++++|+..|+.+.+.. +.+...+..+...+...|++++|++.
T Consensus 56 g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 56 DETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred CCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 44666666666665543 2223333444445555666666666666666542 22334455555566666666666666
Q ss_pred HHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005474 223 FERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302 (695)
Q Consensus 223 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 302 (695)
|+++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+ ..+...|++++|...++.+.+....
T Consensus 133 l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~ 209 (656)
T PRK15174 133 AEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFAL 209 (656)
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 66665531 2235555666666666666666666666655443 1222233222 2355666666666666666554322
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHH----HHHHHHHHHHcCCCCCHHHH
Q 005474 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED----TLSVYREMKEKGMQLSVTLY 378 (695)
Q Consensus 303 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~ 378 (695)
++...+..+...+.+.|++++|...++++.+.. +.+...+..+...|.+.|++++ |...|++..+.... +...+
T Consensus 210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~ 287 (656)
T PRK15174 210 ERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIV 287 (656)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHH
Confidence 233334444555666666666666666666543 2244555556666666666654 56666666554332 45555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 005474 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL-FVLTSLIQCYG 457 (695)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~ 457 (695)
..+...+.+.|++++|+..+++..+.. +.+...+..+...|.+.|++++|.+.|+++.+. .|+. ..+..+..++.
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~ 363 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALL 363 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 666666666666666666666666543 334455555666666666666666666666653 2332 22333344566
Q ss_pred HcCCHhHHHHHHHHhhh
Q 005474 458 KAQRTDDVVRALNRLPE 474 (695)
Q Consensus 458 ~~g~~~~A~~~~~~m~~ 474 (695)
..|+.++|+..|++..+
T Consensus 364 ~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 364 QAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66666666666666553
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=2.8e-15 Score=170.43 Aligned_cols=418 Identities=9% Similarity=0.023 Sum_probs=279.6
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCHhHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHH
Q 005474 142 MTNPDTAALALTYFTNKLKASKEVILYNVT-MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARM-NNLPNKA 219 (695)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A 219 (695)
+.++++|.+.++ .+ .....|+..+.... ..+|.+.|++++|++++.++.+.+. .+......|-.+|.. .++ +++
T Consensus 160 y~q~eqAl~AL~-lr-~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a 235 (987)
T PRK09782 160 LAQLPVARAQLN-DA-TFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRL 235 (987)
T ss_pred hhhHHHHHHHHH-Hh-hhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHH
Confidence 445677777776 33 33244445544444 8888889999999999999888753 234445555556666 355 666
Q ss_pred HHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHHH-------------------------
Q 005474 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR-IDPNAF------------------------- 273 (695)
Q Consensus 220 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~------------------------- 273 (695)
..++.. .+.-|...+..++..|.+.|+.++|.++++++...... |+..+|
T Consensus 236 ~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~ 311 (987)
T PRK09782 236 LALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADN 311 (987)
T ss_pred HHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHH
Confidence 666443 22356777777778888888888887777765432100 111000
Q ss_pred -----HHHHHHHH---------------------------------------------------------------HcCC
Q 005474 274 -----STLIKLYG---------------------------------------------------------------TAGN 285 (695)
Q Consensus 274 -----~~li~~~~---------------------------------------------------------------~~g~ 285 (695)
-.++..+. +.|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~ 391 (987)
T PRK09782 312 RQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQ 391 (987)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccc
Confidence 01122222 3344
Q ss_pred hHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCC---hHHHHHH----------------------HHHHHH-CCC-
Q 005474 286 FDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKR---PWQVKTI----------------------YKEMTD-NGL- 336 (695)
Q Consensus 286 ~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~---~~~a~~~----------------------~~~m~~-~~~- 336 (695)
.++|.++|+..... ....+.....-++..|.+.+. ...+..+ ...... .+.
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 44454444444331 011222333355566655554 2222222 111111 111
Q ss_pred CC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHH
Q 005474 337 SP--NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 414 (695)
Q Consensus 337 ~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 414 (695)
++ +...|..+..++.. ++.++|...|.+..... |+......+...+...|++++|...|+++... .|+...+
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~ 545 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH---DMSNEDL 545 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHH
Confidence 22 45666666666665 78888998887776653 45444444555567899999999999998654 3455556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC
Q 005474 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494 (695)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~ 494 (695)
..+...+.+.|+.++|.+.+++..+... .+...+..+...+.+.|++++|+..+++.++. .|+...+..+..++.+.
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHC
Confidence 6777888999999999999999988541 23333444444555679999999999999855 57777888888899999
Q ss_pred CH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCcc-ccchHHHHHHHHhcCCHHHHHHHHH
Q 005474 495 PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVK-KAYCNCLIDLCVNLNLLENACKLLE 571 (695)
Q Consensus 495 ~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~-~~~~~~L~~~~~~~g~~~~A~~~l~ 571 (695)
|+ ++|...++.+...+|++..+...+|..+...| ..++|.+.+++. ...|+ ..++..++.++...|++++|+..++
T Consensus 623 G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G-~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 623 HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG-DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99 99999999999999999999999999988888 789999999876 44454 4488999999999999999999999
Q ss_pred HHHHcC
Q 005474 572 LGLTLE 577 (695)
Q Consensus 572 ~~~~~~ 577 (695)
++++..
T Consensus 702 ~Al~l~ 707 (987)
T PRK09782 702 LVIDDI 707 (987)
T ss_pred HHHhcC
Confidence 998765
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=3e-16 Score=174.50 Aligned_cols=336 Identities=7% Similarity=-0.021 Sum_probs=272.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 005474 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246 (695)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 246 (695)
-...++..+.+.|++++|+.+++........ +...+..+..++...|++++|++.|+++.+.. +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3556677888999999999999999877433 34455556667778999999999999998853 335778888999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 005474 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 326 (695)
Q Consensus 247 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 326 (695)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999998864 456778899999999999999999999988766433 23333333 34788999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhH
Q 005474 327 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE----AFEIFEDMK 402 (695)
Q Consensus 327 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~ 402 (695)
.++.+.+....++...+..+...+.+.|++++|...|++..+.... +...+..+...|...|++++ |+..|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9999887654445555566678889999999999999999887543 67778889999999999986 899999998
Q ss_pred hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCH
Q 005474 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 481 (695)
Q Consensus 403 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 481 (695)
+.. +.+...+..+...+.+.|++++|...+++..+.. | +...+..+..+|.+.|++++|+..|+++.+. .|+.
T Consensus 278 ~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~ 351 (656)
T PRK15174 278 QFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVT 351 (656)
T ss_pred hhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc
Confidence 865 5677889999999999999999999999999853 4 5667778889999999999999999999865 5654
Q ss_pred HH-HHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh
Q 005474 482 RF-CGCLLNVMTQTPK-EELGKLVECVEKSNSKLG 514 (695)
Q Consensus 482 ~~-~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~ 514 (695)
.. +..+..++...|+ ++|...++++.+..|++.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 33 3334567788888 999999999999998763
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=5.6e-16 Score=176.05 Aligned_cols=404 Identities=11% Similarity=0.010 Sum_probs=286.8
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005474 132 EQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211 (695)
Q Consensus 132 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 211 (695)
..|.+.+..-.++.++|++++..+... .+.+...+..+..++.+.|++++|.++|++..+.. +.+...+..+..++.
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~ 94 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 345667777788899999988888752 24456678889999999999999999999988762 334566677778889
Q ss_pred HcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005474 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 291 (695)
Q Consensus 212 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 291 (695)
..|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +-+...+..+...+...|..++|++
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 9999999999999988752 33555 8888889999999999999999999875 4466677778888888899999999
Q ss_pred HHHHHHHcCCCCCH------HhHHHHHHHHH-----hcCCh---HHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHH
Q 005474 292 VYEEMKAIGVKPNM------ITYNNLLDTMG-----RAKRP---WQVKTIYKEMTDN-GLSPNWN-TYA----SLLRAYG 351 (695)
Q Consensus 292 ~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-~~~~~~~-~~~----~li~~~~ 351 (695)
.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++.
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 8886654 2321 11112222221 22234 6778888888753 2223221 111 1133445
Q ss_pred hCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC--CHHHHHHHHHHHHHcCCHH
Q 005474 352 RARYGEDTLSVYREMKEKGMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP--DSWTFSSMITICSCRGKVS 428 (695)
Q Consensus 352 ~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~ 428 (695)
..|++++|+..|+.+.+.+.. |+.. ...+..+|...|++++|+.+|+++.+.....+ .......+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 778899999999998877543 3322 22256788889999999999998876432110 1345666777788899999
Q ss_pred HHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhc
Q 005474 429 EAEAMFNEMLEAGF-----------EPN---LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQ 493 (695)
Q Consensus 429 ~A~~~~~~m~~~g~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~ 493 (695)
+|.++++.+.+... .|+ ...+..+...+...|+.++|+.+++++... .| +...+..+...+..
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 99999998887421 122 234556777888889999999999988754 45 44567777777777
Q ss_pred CCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCcccc
Q 005474 494 TPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKA 548 (695)
Q Consensus 494 ~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~ 548 (695)
.|. ++|.+.++++...+|++..+.-.++..+...| .+++|.++++++ ...|+.+
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~-~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ-EWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCH
Confidence 887 99999999999999988777777776666666 788888888776 3445544
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=1.6e-15 Score=172.25 Aligned_cols=404 Identities=9% Similarity=-0.004 Sum_probs=303.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHH
Q 005474 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243 (695)
Q Consensus 164 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 243 (695)
+..-..-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|.++|++..+.. +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44444556677889999999999999988631 4456678899999999999999999999988742 335777888999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHH
Q 005474 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323 (695)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 323 (695)
.+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.... +...+..+..++...+..+.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 9999999999999999998874 45666 888999999999999999999999987432 55666677888888999999
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hCCCh---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHH
Q 005474 324 VKTIYKEMTDNGLSPNW------NTYASLLRAYG-----RARYG---EDTLSVYREMKEK-GMQLSVT-LY----NTLLA 383 (695)
Q Consensus 324 a~~~~~~m~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~~~~~-~~----~~li~ 383 (695)
|.+.++.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+ ...+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9998876654 2221 11122222222 22234 7788888888854 2223221 11 11133
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcC
Q 005474 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP---NLFVLTSLIQCYGKAQ 460 (695)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g 460 (695)
++...|++++|+..|+.+.+.+.-.|+. ....+...|...|++++|...|+++.+..... ....+..+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 4567799999999999998865211332 22235778999999999999999988743211 1345667777889999
Q ss_pred CHhHHHHHHHHhhhCC-----------CCCCH---HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhc
Q 005474 461 RTDDVVRALNRLPELG-----------ITPDD---RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQD 525 (695)
Q Consensus 461 ~~~~A~~~~~~m~~~g-----------~~pd~---~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (695)
++++|+.+++++.+.. -.|+. ..+..+...+...|+ ++|.+.++++....|++..+...++..+.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999988542 12332 234455567777888 99999999999999999999999999888
Q ss_pred chhhHHHHHHHHHHhc-ccCccc-cchHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 526 IEGDFKKEATELFNSI-SKDVKK-AYCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 526 ~~g~~~~eA~~l~~~~-~~~~~~-~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
..| ..++|++.++++ ...|+. .++-.++..+...|++++|+.+++.+++..
T Consensus 405 ~~g-~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 405 ARG-WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred hcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 888 789999999877 445654 466788889999999999999999998754
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=7e-14 Score=159.09 Aligned_cols=429 Identities=10% Similarity=-0.013 Sum_probs=276.5
Q ss_pred CCCCCHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHH--------HHhcCCHHHHHHHHHHHHHcCCCC
Q 005474 127 GDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKV--------FRKCRDLDKAERLFDDMLDRGVKP 198 (695)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~l~~~m~~~g~~p 198 (695)
..++........+..+.++.+|..+++.+....+ -+..++..+... |.+. ++|.+.++ .......|
T Consensus 106 ~ldP~n~~~~~~La~i~~~~kA~~~ye~l~~~~P--~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~ 179 (987)
T PRK09782 106 KRHPGDARLERSLAAIPVEVKSVTTVEELLAQQK--ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASP 179 (987)
T ss_pred hcCcccHHHHHHHHHhccChhHHHHHHHHHHhCC--CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCC
Confidence 3344333444444555677888888888877642 233334444443 5554 44444444 33333334
Q ss_pred CHHHHHHH-HHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 005474 199 DNVTFSTL-ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR-AGNVEMAFGLYDRARNEKWRIDPNAFSTL 276 (695)
Q Consensus 199 ~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 276 (695)
+..+.... ...|.+.|++++|++++.++.+.+ ..+..-...|..+|.. .++ +++..+++. .+.-+...+..+
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~al 253 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITY 253 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHH
Confidence 45555555 778888999999999999988875 3345556677777777 366 777777553 223688888999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCC-CCHHhHHH------------------------------HHHHH----------
Q 005474 277 IKLYGTAGNFDGCLNVYEEMKAIGVK-PNMITYNN------------------------------LLDTM---------- 315 (695)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~------------------------------li~~~---------- 315 (695)
...|.+.|+.++|.++++++...... |...+|.. ++..+
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ 333 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999887543111 22122111 01122
Q ss_pred -----------------------------------------------------HhcCChHHHHHHHHHHHHC--CCCCCH
Q 005474 316 -----------------------------------------------------GRAKRPWQVKTIYKEMTDN--GLSPNW 340 (695)
Q Consensus 316 -----------------------------------------------------~~~g~~~~a~~~~~~m~~~--~~~~~~ 340 (695)
.+.|+.++|.++|+..... ....+.
T Consensus 334 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (987)
T PRK09782 334 KLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQ 413 (987)
T ss_pred HHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCH
Confidence 2233444444444443331 011123
Q ss_pred HHHHHHHHHHHhCCC---hHHHHHH----------------------HHHHHHc-CC-CC--CHHHHHHHHHHHHhcCCH
Q 005474 341 NTYASLLRAYGRARY---GEDTLSV----------------------YREMKEK-GM-QL--SVTLYNTLLAMCADVGYT 391 (695)
Q Consensus 341 ~~~~~li~~~~~~g~---~~~A~~~----------------------~~~m~~~-~~-~~--~~~~~~~li~~~~~~g~~ 391 (695)
....-++..|.+.+. ..++..+ ++..... +. +. +...|..+..++.. |+.
T Consensus 414 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~ 492 (987)
T PRK09782 414 TLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLP 492 (987)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCc
Confidence 333355555555544 2222111 1111110 11 22 45566666666665 788
Q ss_pred HHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 005474 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471 (695)
Q Consensus 392 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 471 (695)
++|+..+.+.... .|+......+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...+++
T Consensus 493 ~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 493 GVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred HHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8899877777654 466555445555567899999999999998663 45555667778888999999999999999
Q ss_pred hhhCCCCCCHH-HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCcccc
Q 005474 472 LPELGITPDDR-FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKA 548 (695)
Q Consensus 472 m~~~g~~pd~~-~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~ 548 (695)
.++.. |+.. .+..+...+...|+ ++|...++++.+.+|+ ......++..+.+.| ..++|.+.+++. ...|+..
T Consensus 568 AL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG-~~deA~~~l~~AL~l~Pd~~ 643 (987)
T PRK09782 568 AEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH-NVPAAVSDLRAALELEPNNS 643 (987)
T ss_pred HHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCH
Confidence 98653 5433 33333444455677 9999999999999997 777788888888888 899999999776 4556544
Q ss_pred -chHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 549 -YCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 549 -~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
.++.++.++...|++++|+..++++++..
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 77999999999999999999999998764
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=1.2e-13 Score=154.05 Aligned_cols=428 Identities=10% Similarity=0.029 Sum_probs=297.3
Q ss_pred HHHhhCChHHHHHHHHHHHhcCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 005474 138 ILNNMTNPDTAALALTYFTNKLKASKEV--ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL 215 (695)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 215 (695)
+...-+++..|++.|+.+.+.. |+. .++ .++..+...|+.++|+..+++.... ..........+...+...|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 3344556888999888887653 442 234 7888888889999999999888721 11122233333457888899
Q ss_pred hhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005474 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295 (695)
Q Consensus 216 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 295 (695)
+++|+++|+++.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999998853 234677778888889999999999999998876 45655565555555556677679999999
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH------HHHHHHHH---H--hCCC---hHHHHH
Q 005474 296 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT------YASLLRAY---G--RARY---GEDTLS 361 (695)
Q Consensus 296 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~------~~~li~~~---~--~~g~---~~~A~~ 361 (695)
+.+... -+...+..++.++.+.|-...|.++..+-... +.+...- ...++..- . ...+ .+.|+.
T Consensus 195 ll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 195 AVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 988742 25667778888888888888888766553211 1111100 00111100 0 1122 344555
Q ss_pred HHHHHHHc-CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005474 362 VYREMKEK-GMQLSV-TLY----NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435 (695)
Q Consensus 362 ~~~~m~~~-~~~~~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 435 (695)
-++.+... +..|.. ..| .-.+-++...|++.++++.|+.+...+. +....+-.++.++|...++.++|..+++
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~-~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY-KMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 55555542 222321 111 2345577888999999999999998774 4455577889999999999999999999
Q ss_pred HHHHCC-----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCC-------------CCCCHHH-HHHHHHHHhcCCH
Q 005474 436 EMLEAG-----FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG-------------ITPDDRF-CGCLLNVMTQTPK 496 (695)
Q Consensus 436 ~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~pd~~~-~~~ll~~~~~~~~ 496 (695)
.+.... ..++......|.-+|...+++++|..+++++.+.. ..||-.. +..+...+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 987643 12344446788889999999999999999987621 2233333 3334455677777
Q ss_pred -HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcc-cCccc-cchHHHHHHHHhcCCHHHHHHHHHHH
Q 005474 497 -EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKK-AYCNCLIDLCVNLNLLENACKLLELG 573 (695)
Q Consensus 497 -~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~-~~~~~-~~~~~L~~~~~~~g~~~~A~~~l~~~ 573 (695)
.+|++.++.+....|.+..+...++..+..+| ...+|++.++.+. ..|+. .+.-.++.+....|++++|..+.+..
T Consensus 432 l~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg-~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 432 LPTAQKKLEDLSSTAPANQNLRIALASIYLARD-LPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999999999999998988888888 8899999997653 34443 35567888888999999999999887
Q ss_pred HHcC
Q 005474 574 LTLE 577 (695)
Q Consensus 574 ~~~~ 577 (695)
.+..
T Consensus 511 ~~~~ 514 (822)
T PRK14574 511 ISRS 514 (822)
T ss_pred HhhC
Confidence 7654
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=3.7e-14 Score=137.48 Aligned_cols=324 Identities=19% Similarity=0.273 Sum_probs=233.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCChhHH-HHHHHhchhCC-----------
Q 005474 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC--ARMNNLPNKA-VEWFERMPSFG----------- 230 (695)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A-~~~~~~m~~~g----------- 230 (695)
+++=|.++. +..+|.+.++.-+|+.|...|+..+...-..|+.. |-...++--| .+.|-.|.+.|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 334455554 34567777788888888887776666665555552 2222222211 23344443322
Q ss_pred --------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005474 231 --------CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302 (695)
Q Consensus 231 --------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 302 (695)
.+.+..+|..||.++|+--..+.|.++|++......+.+..+||.+|.+-.-. ...+++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 23467889999999999999999999999998888889999999998654432 227889999999999
Q ss_pred CCHHhHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHH----cCCCC
Q 005474 303 PNMITYNNLLDTMGRAKRPWQ----VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED-TLSVYREMKE----KGMQL 373 (695)
Q Consensus 303 p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~~~ 373 (695)
||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 999999999999999998765 56778889999999999999999999888887644 4444444432 22222
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC---CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 005474 374 ----SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN---CQPD---SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443 (695)
Q Consensus 374 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 443 (695)
|...|...+..|....+.+-|.++..-+..... +.|+ ..-|..+..+.|+...++.-...|+.|.-.-+-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 445667778888888899988888777654322 1222 334667778888888999999999999887777
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 005474 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 493 (695)
Q Consensus 444 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 493 (695)
|+..+...++++..-.|+++-.-+++..|+..|..-+...-..++..++.
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 88888888999999999999999999998887755444444444443333
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=1.4e-12 Score=145.59 Aligned_cols=403 Identities=12% Similarity=0.069 Sum_probs=296.2
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005474 134 DCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213 (695)
Q Consensus 134 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 213 (695)
+.+.++...++..+|+..++.+... ...+......+...|...|++++|+++|+++.+.. +-+...+..++..+...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhc
Confidence 5566667778899999999988611 12234344444668889999999999999999873 23466677778899999
Q ss_pred CChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005474 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293 (695)
Q Consensus 214 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 293 (695)
++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. +-+...+..++....+.|-...|+++.
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 9999999999999874 5676666555555555677767999999999885 557888899999999999999999887
Q ss_pred HHHHHcCCCCCHHhHHH--------HHHHH-----HhcCChHH---HHHHHHHHHH-CCCCCCH-H----HHHHHHHHHH
Q 005474 294 EEMKAIGVKPNMITYNN--------LLDTM-----GRAKRPWQ---VKTIYKEMTD-NGLSPNW-N----TYASLLRAYG 351 (695)
Q Consensus 294 ~~m~~~g~~p~~~~~~~--------li~~~-----~~~g~~~~---a~~~~~~m~~-~~~~~~~-~----~~~~li~~~~ 351 (695)
.+-.+. + +...+.. ++..- ....++.. |+.-++.+.. .+..|.. . ...-.+-++.
T Consensus 227 ~~~p~~-f--~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 227 KENPNL-V--SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HhCccc-c--CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 764422 1 1111111 11100 11223333 4444444443 1222322 1 2223455778
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC----CCCCHHHHHHHHHHHHHcCCH
Q 005474 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN----CQPDSWTFSSMITICSCRGKV 427 (695)
Q Consensus 352 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~ 427 (695)
..|++.++++.|+.|...+.+....+-..+.++|...+++++|+.+|+.+..... ..++......|..+|...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 8999999999999999988776677888899999999999999999999866431 123444567899999999999
Q ss_pred HHHHHHHHHHHHCCC-------------CCCH-HHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHh
Q 005474 428 SEAEAMFNEMLEAGF-------------EPNL-FVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMT 492 (695)
Q Consensus 428 ~~A~~~~~~m~~~g~-------------~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~ 492 (695)
++|..+++.+.+... .||- ..+..++..+...|+..+|.+.++++... .| |......+-..+.
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~ 461 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYL 461 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 999999999987311 1222 23455677888999999999999999754 55 6677888888888
Q ss_pred cCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCcccc
Q 005474 493 QTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKA 548 (695)
Q Consensus 493 ~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~ 548 (695)
..|. .+|.+.++.++.++|++..+...+++.+...+ .+++|..+++.+ ...|+..
T Consensus 462 ~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~-e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 462 ARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQ-EWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred hcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhCCCch
Confidence 8888 99999999999999999888888888887777 889999888766 3334443
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.71 E-value=3.2e-13 Score=144.01 Aligned_cols=423 Identities=15% Similarity=0.101 Sum_probs=319.7
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChhHHHHH
Q 005474 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVK--PDNVTFSTLISCARMNNLPNKAVEW 222 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~ 222 (695)
++.+.+.+..+.... ..|+++.+.|...|.-.|++..++.+...+...... .-...|--+.++|-..|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 778888888887764 456677899999999999999999999998865311 1234577788899999999999999
Q ss_pred HHhchhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHH
Q 005474 223 FERMPSFGCDPDA--LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG----NFDGCLNVYEEM 296 (695)
Q Consensus 223 ~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m 296 (695)
|.+..+. .+|. ..+.-|...|.+.|+++.+...|+.+.+.. +-+..+...|...|...+ ..++|..++.+.
T Consensus 330 Y~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 330 YMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 9877663 4444 344557899999999999999999998764 445667777777777765 567777887777
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc---
Q 005474 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE----MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK--- 369 (695)
Q Consensus 297 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 369 (695)
.+.- +.|...|-.+...+-... ...+..+|.. +...+-.+.....|.+...+...|.++.|...|......
T Consensus 407 ~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 407 LEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred Hhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 7653 336777777766665544 4333665554 345565678889999999999999999999999988755
Q ss_pred CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 005474 370 GMQLSV------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443 (695)
Q Consensus 370 ~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 443 (695)
...+|. .+-..+...+...++.+.|.+.|..+.+.. +--+..|..+..+....++..+|...++...... .
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~ 561 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-S 561 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-c
Confidence 222333 223337777888899999999999998864 3334445555544445678889999999988732 3
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHhhh-CCCCCCHHHHHHHHHHHhcC-------C-----H-HHHHHHHHHHHHc
Q 005474 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPE-LGITPDDRFCGCLLNVMTQT-------P-----K-EELGKLVECVEKS 509 (695)
Q Consensus 444 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~~~~~ll~~~~~~-------~-----~-~~a~~~~~~~~~~ 509 (695)
-+...+..+...|.+...+.-|.+-|+...+ ....+|......|.+.|.+. + . +.|.++|.+++..
T Consensus 562 ~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~ 641 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN 641 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777788888889888887776653 22346877777787766532 1 2 7788899999999
Q ss_pred CCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccC--ccccchHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Q 005474 510 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD--VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEV 578 (695)
Q Consensus 510 ~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~--~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~ 578 (695)
+|.+..+.|-+|-+++..| ++++|+.+|.++... ....+|-.++.+|..+|++..|+++|+..++.-.
T Consensus 642 dpkN~yAANGIgiVLA~kg-~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKG-RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred Ccchhhhccchhhhhhhcc-CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998888 899999999888543 2456898999999999999999999999986644
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.9e-12 Score=125.77 Aligned_cols=355 Identities=17% Similarity=0.189 Sum_probs=250.7
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 005474 197 KPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 276 (695)
Q Consensus 197 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 276 (695)
+.+..+|.++|.++++--..+.|.+++++-.....+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 4477899999999999999999999999988777788999999999875433 337899999999999999999999
Q ss_pred HHHHHHcCChHH----HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHH-HHHHHHHHHH----CCCC----CCHHHH
Q 005474 277 IKLYGTAGNFDG----CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTD----NGLS----PNWNTY 343 (695)
Q Consensus 277 i~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~~----~~~~~~ 343 (695)
+++..+.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ..++ .|...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998765 56788899999999999999999999999988754 4445555443 2222 245667
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHH
Q 005474 344 ASLLRAYGRARYGEDTLSVYREMKEKG----MQLS---VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416 (695)
Q Consensus 344 ~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 416 (695)
...+..|.+..+.+.|.++...+.... +.|+ ..-|..+....++....+.-...|+.|.-.-. -|+..+...
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y-~p~~~~m~~ 438 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY-FPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee-cCCchhHHH
Confidence 788889999999999999877665321 2233 23466677888888999999999999987654 799999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH---HHHHHHHHHhc
Q 005474 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR---FCGCLLNVMTQ 493 (695)
Q Consensus 417 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~---~~~~ll~~~~~ 493 (695)
++++....|.++-.-+++..++..|..-+.. + -..++..|......|+.. -+.....-|..
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~-----l-----------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSD-----L-----------REEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHH-----H-----------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999998865332222 2 223344444434444322 33333222211
Q ss_pred CCHHHHHHHHHHHHHc--CCC-hhHHHHHHhhhhcchhhHHHHHHHHHHhcc----cCccccchH---HHHHHHHhcCCH
Q 005474 494 TPKEELGKLVECVEKS--NSK-LGYVVKLLLEEQDIEGDFKKEATELFNSIS----KDVKKAYCN---CLIDLCVNLNLL 563 (695)
Q Consensus 494 ~~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~----~~~~~~~~~---~L~~~~~~~g~~ 563 (695)
.-.+..+.--.++... .|. ..++.-+|.+. | ..++|.+++.-+. .-|..+..| -|++.-.+.++.
T Consensus 503 d~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~----G-~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sp 577 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQDWPATSLNCIAILLLRA----G-RTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSP 577 (625)
T ss_pred HHHHHHHhhHHHHHhccCChhHHHHHHHHHHHc----c-hHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCH
Confidence 0001111111222221 121 23333444442 5 8899999876652 224444556 455677788888
Q ss_pred HHHHHHHHHHHHcC
Q 005474 564 ENACKLLELGLTLE 577 (695)
Q Consensus 564 ~~A~~~l~~~~~~~ 577 (695)
-.|...++.|...+
T Consensus 578 sqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 578 SQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHHHHcC
Confidence 89999999987654
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=1.7e-13 Score=133.65 Aligned_cols=397 Identities=12% Similarity=0.083 Sum_probs=238.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCChhHHHHHHHhchhCCCCCC----HHHHHHHHHHH
Q 005474 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL-ISCARMNNLPNKAVEWFERMPSFGCDPD----ALTYSSMIDAY 245 (695)
Q Consensus 171 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~ 245 (695)
+..-|..+....+|+..|+-+.+...-|+.-....= -+.+.+...+.+|+++|+.....-...+ ....+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 334455556666777777766666555555433222 2345556667777777665544211111 22344444556
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH------------HhHHHHH-
Q 005474 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM------------ITYNNLL- 312 (695)
Q Consensus 246 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------------~~~~~li- 312 (695)
.+.|+++.|+..|+...+. .|+..+--.|+-++.-.|+.++..+.|.+|+.....||. ...+.-|
T Consensus 287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 6677777777777776655 466655555555555667777777777777654322221 1111111
Q ss_pred ----HHHHhcCChHHHHHHHH---HHHHCCCCCCHHH-------------H--------HHHHHHHHhCCChHHHHHHHH
Q 005474 313 ----DTMGRAKRPWQVKTIYK---EMTDNGLSPNWNT-------------Y--------ASLLRAYGRARYGEDTLSVYR 364 (695)
Q Consensus 313 ----~~~~~~g~~~~a~~~~~---~m~~~~~~~~~~~-------------~--------~~li~~~~~~g~~~~A~~~~~ 364 (695)
.-.-+..+ ..|++.+- .++.--+.|+... + ..-..-|.++|+++.|.+++.
T Consensus 365 nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 365 NDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 11111110 01111111 1111011111000 0 001224556666666666655
Q ss_pred HHHHcCCCCCH-------------------------------HHHHHH-----HHHHHhcCCHHHHHHHHHHhHhCCCCC
Q 005474 365 EMKEKGMQLSV-------------------------------TLYNTL-----LAMCADVGYTDEAFEIFEDMKSSENCQ 408 (695)
Q Consensus 365 ~m~~~~~~~~~-------------------------------~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~~~~~ 408 (695)
-+.++.-+.-. .-||.- .......|++++|.+.|++...... .
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda-s 522 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA-S 522 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch-H
Confidence 55433211100 111110 1112236889999999999876442 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC-CHHHHHHH
Q 005474 409 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCL 487 (695)
Q Consensus 409 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~l 487 (695)
-....|| +.-.+-..|++++|++.|-++..- +..+..+...+.+.|....+...|++++.+.. .+.| |......|
T Consensus 523 c~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~--slip~dp~ilskl 598 (840)
T KOG2003|consen 523 CTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN--SLIPNDPAILSKL 598 (840)
T ss_pred HHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCHHHHHHH
Confidence 2222233 233467889999999999877542 23477788888999999999999999998765 3455 67789999
Q ss_pred HHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCccccchHHHHHHH-HhcCCHH
Q 005474 488 LNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLC-VNLNLLE 564 (695)
Q Consensus 488 l~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~~~~~L~~~~-~~~g~~~ 564 (695)
...|.+.|+ .+|.+..-.-.+.-|.+..++..|+..|.+.. ++++|..+|++. -.+|+..-|.-++..| .+.|++.
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtq-f~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ-FSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH-HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 999999999 88998877777788998899999987777655 899999999887 5678988998877555 6789999
Q ss_pred HHHHHHHHHHHc
Q 005474 565 NACKLLELGLTL 576 (695)
Q Consensus 565 ~A~~~l~~~~~~ 576 (695)
+|..+++...+.
T Consensus 678 ka~d~yk~~hrk 689 (840)
T KOG2003|consen 678 KAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.61 E-value=4.7e-10 Score=114.94 Aligned_cols=433 Identities=9% Similarity=0.022 Sum_probs=335.3
Q ss_pred CCHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCCHHHHHH
Q 005474 130 FLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDM----LDRGVKPDNVTFST 205 (695)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~~~~~ 205 (695)
+..-+.-..+..+..+..|..+++.+++. ++-+..+|-+....=-.+|+.+...+++++- ...|+..+...|-.
T Consensus 407 p~s~dLwlAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 407 PQSMDLWLALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 34444445555566688899999999887 4567777887777778889999988887663 45688889998888
Q ss_pred HHHHHHHcCChhHHHHHHHhchhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 005474 206 LISCARMNNLPNKAVEWFERMPSFGCDP--DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283 (695)
Q Consensus 206 li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 283 (695)
=...|-..|..-.+..+....+..|++- -..||+.-...|.+.+.++-|..+|...++-- +.+...|......--..
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhc
Confidence 8888888898888888888888777653 35688888899999999999999999988653 56777888888777788
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 005474 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363 (695)
Q Consensus 284 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 363 (695)
|..++...+|++....- +-....|.....-+-..|+...|..++....+.... +...|-.-+..-..+..++.|..+|
T Consensus 564 gt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHH
Confidence 99999999999998863 335666766777788899999999999999886543 6788888999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 005474 364 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 443 (695)
Q Consensus 364 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 443 (695)
.+.... .++...|.--+...-..++.++|++++++..+.. +.-...|..+.+.+-+.++++.|.+.|..-.+. ++
T Consensus 642 akar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 642 AKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 988764 4577777766777777899999999999988753 444567888888899999999999988776653 33
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHh
Q 005474 444 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLL 521 (695)
Q Consensus 444 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~ 521 (695)
-.+..|..+...-.+.|..-.|..+|++.... .| |...|...+..-.+.|. ++|..++.++..--|+.+....--.
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI 794 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAI 794 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHH
Confidence 35667777777888899999999999998765 34 67789999999999999 9999999988888887654332111
Q ss_pred hhhcchhhHHHHHHHHHHhcccCccccchHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 522 EEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 522 ~~~~~~g~~~~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
.. ...+++.-.+.+-+++. +.++.+.-+....+|...+++.|++.|+++++..
T Consensus 795 ~l-e~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 795 WL-EPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred Hh-ccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 11 11122222333333332 3455567788888999999999999999998765
No 30
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.61 E-value=3.3e-11 Score=128.95 Aligned_cols=442 Identities=13% Similarity=0.093 Sum_probs=316.4
Q ss_pred HhCCCCCHHHHHHHHHhh----CChHHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 005474 125 CLGDDFLEQDCVIILNNM----TNPDTAALALTYFTNKLKASK-EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD 199 (695)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 199 (695)
++...+...+++..+... +++..+..+...+.......+ -...|--+.++|...|++++|...|.+..+. .+|
T Consensus 262 ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d 339 (1018)
T KOG2002|consen 262 AYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DND 339 (1018)
T ss_pred HHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCC
Confidence 344444444444433332 247778888777765432222 2345777899999999999999999776654 555
Q ss_pred HHHH--HHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHhhCCCCCCHHHH
Q 005474 200 NVTF--STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG----NVEMAFGLYDRARNEKWRIDPNAF 273 (695)
Q Consensus 200 ~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~g~~~~~~~~ 273 (695)
.+++ --|...|.+.|+++.+...|+...+.. +-+..|...|...|+..+ ..+.|..++.+..+.- +.|...|
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~ 417 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAW 417 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHH
Confidence 5444 446679999999999999999998752 335667777777777665 4677888887777654 5678888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH----HHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCH------
Q 005474 274 STLIKLYGTAGNFDGCLNVYEEM----KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN---GLSPNW------ 340 (695)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~------ 340 (695)
-.+...|....-+ .++.+|... ...+-.+.....|.+.......|.+..|...|...... ...+|.
T Consensus 418 l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 418 LELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 8888777665444 447776654 34555577889999999999999999999999988754 122232
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHH
Q 005474 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV-TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419 (695)
Q Consensus 341 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 419 (695)
.+--.+...+-..++.+.|.+.|..+.+.. |.- ..|--+.......+...+|..+++...... ..+...++.+..
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~ 572 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSLLGN 572 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHH
Confidence 222335556667789999999999998863 332 233334433444578889999999998866 456666666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH------------cCCHhHHHHHHHHhhhCCCCC-CHHHHH
Q 005474 420 ICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGK------------AQRTDDVVRALNRLPELGITP-DDRFCG 485 (695)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p-d~~~~~ 485 (695)
.+.+...+..|.+-|....+.- ..+|..+.-+|.+.|.. .+..+.|+++|.+.+.. .| |...-+
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAAN 650 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAAN 650 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhcc
Confidence 8888888888888777766532 22577766666665532 34677899999988855 45 566677
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcc----cCccccchHHHHHHHHhc
Q 005474 486 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS----KDVKKAYCNCLIDLCVNL 560 (695)
Q Consensus 486 ~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~----~~~~~~~~~~L~~~~~~~ 560 (695)
.+.-+++..|. .+|..+|.++.+.--+...++-.|+-+|...| .+..|.++++..- ...+..+...|+.++++.
T Consensus 651 GIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~-qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 651 GIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQG-QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred chhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHH-HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 77778888898 99999999998766556667777888888888 8899999987652 233555889999999999
Q ss_pred CCHHHHHHHHHHHHHcCc
Q 005474 561 NLLENACKLLELGLTLEV 578 (695)
Q Consensus 561 g~~~~A~~~l~~~~~~~~ 578 (695)
|.+.+|.+.+..+....+
T Consensus 730 ~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 730 GKLQEAKEALLKARHLAP 747 (1018)
T ss_pred hhHHHHHHHHHHHHHhCC
Confidence 999999999999876543
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=1.7e-12 Score=136.91 Aligned_cols=286 Identities=12% Similarity=0.008 Sum_probs=183.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 005474 283 AGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 361 (695)
.|+++.|.+.+.+..+.. |+ ...+-....++.+.|+++.|.+.+.+..+....++..........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 566666666666555442 33 223333345556666666666666666543322222233334556666777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHH-HHHHH---HHcCCHHHHHHHHHHH
Q 005474 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS-MITIC---SCRGKVSEAEAMFNEM 437 (695)
Q Consensus 362 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~-li~~~---~~~g~~~~A~~~~~~m 437 (695)
.++.+.+..+. +...+..+...|.+.|++++|.+++..+.+.+. .+...+.. -..++ ...+..+++.+.+..+
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777666533 455666677777777777777777777776653 23332311 11111 2222223333344444
Q ss_pred HHCCC---CCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHH-HHHHHH--hcCCH-HHHHHHHHHHHHcC
Q 005474 438 LEAGF---EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG-CLLNVM--TQTPK-EELGKLVECVEKSN 510 (695)
Q Consensus 438 ~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~-~ll~~~--~~~~~-~~a~~~~~~~~~~~ 510 (695)
.+... +.+...+..+...+...|+.++|.+++++..+. .||..... .++..+ ...++ +.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 44221 137788888888999999999999999988865 44443110 122222 22344 78888999999999
Q ss_pred CChh--HHHHHHhhhhcchhhHHHHHHHHHHh---cccCccccchHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005474 511 SKLG--YVVKLLLEEQDIEGDFKKEATELFNS---ISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 576 (695)
Q Consensus 511 p~~~--~~~~~l~~~~~~~g~~~~eA~~l~~~---~~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~ 576 (695)
|++. .+.+.||+.+...| .+++|++.|+. ....|+..++..|+.++.+.|+.++|.+++++++..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~-~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHG-EFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCChhHHHHHHHHHHHHHcc-cHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999 88899999998888 89999999993 356788888889999999999999999999998643
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=1.6e-11 Score=128.90 Aligned_cols=282 Identities=12% Similarity=0.106 Sum_probs=190.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCChhHHHHHHHhchhCCCCCCHHHHH--HHHHHHHhcCCHHHH
Q 005474 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTL-ISCARMNNLPNKAVEWFERMPSFGCDPDALTYS--SMIDAYGRAGNVEMA 254 (695)
Q Consensus 178 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A 254 (695)
.|++++|++.+....+.. ++...+..+ .....+.|+++.|.+.|.++.+. .|+...+. .....+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 588888887777655442 122333333 33457888888888888888763 45543332 335677888888888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HhHHHHHHHHHhcCChHHHHHH
Q 005474 255 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM-------ITYNNLLDTMGRAKRPWQVKTI 327 (695)
Q Consensus 255 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~ 327 (695)
.+.++++.+.. +-+..+...+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888888775 556778888888888888888888888888877654222 1233333333344445555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC
Q 005474 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407 (695)
Q Consensus 328 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (695)
++.+.+. .+.+......+...+...|+.++|.+++++..+. .+|.... ++.+....++.+++++..+...+..
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-- 324 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-- 324 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC--
Confidence 5555332 2346667777777888888888888888777764 3333211 2333445577888888887777654
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 408 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
+-|...+..+...|.+.+++++|.+.|+.+.+ ..|+...|..+...+.+.|+.++|..++++..
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666677777888888888888888888877 45777777778888888888888888887654
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=1.2e-11 Score=121.01 Aligned_cols=383 Identities=15% Similarity=0.135 Sum_probs=250.9
Q ss_pred hHHHHHHHHHHHhcCC-CCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 005474 145 PDTAALALTYFTNKLK-ASKE--VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 221 (695)
+.+|+.+++.+..+.+ +..+ ....|.+.-.+.+.|++++|+.-|+...+. .|+..+--.|+-++..-|+.++..+
T Consensus 253 fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmke 330 (840)
T KOG2003|consen 253 FSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKE 330 (840)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHH
Confidence 5678888888776642 1112 233555555677889999999999998876 6787776666667777889999999
Q ss_pred HHHhchhCCCC------------CCHHHHHHHH-----HHHHhcC--CHHHHHHHHHHHhhCCCCCCHH-----------
Q 005474 222 WFERMPSFGCD------------PDALTYSSMI-----DAYGRAG--NVEMAFGLYDRARNEKWRIDPN----------- 271 (695)
Q Consensus 222 ~~~~m~~~g~~------------p~~~~~~~li-----~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~----------- 271 (695)
.|.+|...... |+....+.-| +-.-+.+ +.++++-.--+++.--+.|+-.
T Consensus 331 af~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk 410 (840)
T KOG2003|consen 331 AFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLK 410 (840)
T ss_pred HHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHH
Confidence 99998753222 3333333222 1122211 1222222222222211222211
Q ss_pred --HH--------HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHH--H---------------------------
Q 005474 272 --AF--------STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL--L--------------------------- 312 (695)
Q Consensus 272 --~~--------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--i--------------------------- 312 (695)
.+ ..-...|.+.|+++.|+++++-+....-+.-...-+.| +
T Consensus 411 ~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~ 490 (840)
T KOG2003|consen 411 ASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA 490 (840)
T ss_pred HhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH
Confidence 00 11234577899999999998877554221111111111 0
Q ss_pred -------HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005474 313 -------DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 385 (695)
Q Consensus 313 -------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 385 (695)
+.....|++++|.+.+++.....-.-....|| +.-.+-..|++++|++.|-++... +..+..+...+...|
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiy 568 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIY 568 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 01134578888888888888754332233333 233456788999999988776542 112666677788888
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 005474 386 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465 (695)
Q Consensus 386 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 465 (695)
....+..+|++++.+.... ++.|+...+-|.+.|-+.|+-.+|.+.+-+--.. ++-|..+..-|..-|....-+++|
T Consensus 569 e~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~eka 645 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKA 645 (840)
T ss_pred HHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHH
Confidence 8889999999998877653 4778888999999999999999888876544332 344888888888888888999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHhc-CCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHH
Q 005474 466 VRALNRLPELGITPDDRFCGCLLNVMTQ-TPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 538 (695)
Q Consensus 466 ~~~~~~m~~~g~~pd~~~~~~ll~~~~~-~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~ 538 (695)
+.+|++.. -+.|+..-|..++..|.+ .|. ..|..+++.+.+.-|.+...+..|.+...+.| +.++.++-
T Consensus 646 i~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg--l~d~key~ 716 (840)
T KOG2003|consen 646 INYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG--LKDAKEYA 716 (840)
T ss_pred HHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc--chhHHHHH
Confidence 99999865 468999999988886654 566 99999999998888988888888877665555 34555543
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.1e-09 Score=108.31 Aligned_cols=421 Identities=17% Similarity=0.140 Sum_probs=315.2
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHH
Q 005474 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDN-VTFSTLISCARMNNLPNKAVEWF 223 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~ 223 (695)
..+|..+|+.+... ...+...|-..+.+=.+++.+..|..+|+..... -|-+ ..|.-.+..=-..|++..|.++|
T Consensus 89 ~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 89 IQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 67899999988764 3567888999999999999999999999998865 3333 33444444555679999999999
Q ss_pred HhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-
Q 005474 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK- 302 (695)
Q Consensus 224 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~- 302 (695)
++..+ ..|+...|++.|+.=.+-..++.|..+|++..-. .|++.+|.-....=-++|+...|..+|+...+.--.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 99887 5899999999999999999999999999999865 599999999999889999999999999987754110
Q ss_pred -CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCChHHHHHH--------HHHHHHcCC
Q 005474 303 -PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN--WNTYASLLRAYGRARYGEDTLSV--------YREMKEKGM 371 (695)
Q Consensus 303 -p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~~~ 371 (695)
-+...+.++..-=.++..++.|.-+|+-.+..= +.+ ...|..+...--+-|+.....+. |+.+...+
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n- 318 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN- 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-
Confidence 123344455554556778888999998887652 222 33444444433444554333322 34444443
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCH--HHHHHHHHH---H-----HHcCCHHHHHHHHHHHHHCC
Q 005474 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS--WTFSSMITI---C-----SCRGKVSEAEAMFNEMLEAG 441 (695)
Q Consensus 372 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~li~~---~-----~~~g~~~~A~~~~~~m~~~g 441 (695)
+.|-.+|--.++.-...|+.+...++|+.....- +|-. ..|...|.. | ....+++.+.++|+..++.
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv--pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l- 395 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV--PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL- 395 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 2366777778888888899999999999998742 4522 122222211 1 2467899999999999982
Q ss_pred CCCCHHHHHHHH----HHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHH
Q 005474 442 FEPNLFVLTSLI----QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 516 (695)
Q Consensus 442 ~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~ 516 (695)
++....||..+- .--.++.+...|.+++...+ |.-|...+|...|..-.+.+. +.+.+++++.++..|.+-..
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 333555555443 34457889999999999988 889999999999998888888 99999999999999998877
Q ss_pred HHHHhhhhcchhhHHHHHHHHHHhcccCcc----ccchHHHHHHHHhcCCHHHHHHHHHHHHHcCcccC
Q 005474 517 VKLLLEEQDIEGDFKKEATELFNSISKDVK----KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 581 (695)
Q Consensus 517 ~~~l~~~~~~~g~~~~eA~~l~~~~~~~~~----~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~ 581 (695)
..-++......| ..+.|+.+|+-+..+|. ...|-+.|+.-...|.++.|+.++++.++......
T Consensus 474 W~kyaElE~~Lg-dtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 474 WSKYAELETSLG-DTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 777776655567 78999999987755553 22789999999999999999999999987654443
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=1.9e-11 Score=128.30 Aligned_cols=284 Identities=11% Similarity=0.043 Sum_probs=207.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhCCChHHHH
Q 005474 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA--SLLRAYGRARYGEDTL 360 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~A~ 360 (695)
.|+++.|.+.+....+..-. ....|.....+..+.|+++.|.+.+.++.+.. |+...+. .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 58888888777766553211 12233333445578888888888888887643 4433222 3356778888899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHH
Q 005474 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS------WTFSSMITICSCRGKVSEAEAMF 434 (695)
Q Consensus 361 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~ 434 (695)
..++++.+.... +...+..+...|.+.|++++|.+++..+.+.....+.. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888877644 66777788888888899999999998888876422221 12333444444455566666777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCh
Q 005474 435 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 513 (695)
Q Consensus 435 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~ 513 (695)
+.+.+. .+.+......+..++...|+.++|.+++++..+. .||..... +.+....++ +++.+.++...+..|++
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 666432 3457888889999999999999999999998864 44543222 222234466 88999999999999999
Q ss_pred hHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCccccchHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005474 514 GYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 576 (695)
Q Consensus 514 ~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~ 576 (695)
......+|+.+...+ .+++|++.|+.. ...|+...|-.|..++.+.|+.++|.+++++++..
T Consensus 328 ~~l~l~lgrl~~~~~-~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 328 PLLWSTLGQLLMKHG-EWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999888878 899999999877 56688888889999999999999999999998764
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=4.7e-11 Score=126.09 Aligned_cols=297 Identities=10% Similarity=0.002 Sum_probs=176.4
Q ss_pred HHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHhchhCCCCCCH--HHHHHHH
Q 005474 168 YNVTMKVF--RKCRDLDKAERLFDDMLDRGVKPDNVTF-STLISCARMNNLPNKAVEWFERMPSFGCDPDA--LTYSSMI 242 (695)
Q Consensus 168 ~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li 242 (695)
+..+..++ ...|+++.|.+.+....+. .|+...+ -....++.+.|+.+.|.+.|.+..+.. |+. .......
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a 160 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHH
Confidence 34444444 4567888888888776654 3443333 233346677788888888887776532 333 2334456
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHH-HHHH---HHhc
Q 005474 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN-LLDT---MGRA 318 (695)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~---~~~~ 318 (695)
..+...|+++.|...++++.+.. +-+..++..+...|.+.|++++|.++++.+.+.++. +...+.. -..+ ....
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 77777888888888888887765 456677777888888888888888888888777543 2222211 1111 1222
Q ss_pred CChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHH
Q 005474 319 KRPWQVKTIYKEMTDNGL---SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY-NTLLAMCADVGYTDEA 394 (695)
Q Consensus 319 g~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~A 394 (695)
+..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.........+ ..........++.+.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHH
Confidence 222323334444433221 125666667777777777777777777777765333221111 1111122334566667
Q ss_pred HHHHHHhHhCCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 395 FEIFEDMKSSENCQPDS--WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 395 ~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
.+.++...+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 319 ~~~~e~~lk~~--p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 319 EKLIEKQAKNV--DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHhC--CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77776665543 2333 4555666777777777777777774333334566666777777777777777777777764
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.3e-10 Score=109.42 Aligned_cols=330 Identities=15% Similarity=0.116 Sum_probs=238.0
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHH
Q 005474 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSS 240 (695)
Q Consensus 161 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 240 (695)
...|...+-....++.+.|....|+..|...... -+..|.+-+....-..+.+.+..+...+... -....--.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~---~h~M~~~F 232 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSD---MHWMKKFF 232 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCccc---chHHHHHH
Confidence 3456655555666677889999999998887754 1233333333222222233222222111110 11112223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHhc
Q 005474 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK--PNMITYNNLLDTMGRA 318 (695)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~ 318 (695)
+..++-...+.+++.+-.+.+...|++-+...-+-...+.....++|+|+.+|+++.+...- -|..+|..++-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 55667777788999999999999887766666666666677789999999999999887321 1577887776443332
Q ss_pred CChH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005474 319 KRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397 (695)
Q Consensus 319 g~~~-~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 397 (695)
.+.. .|..+++ -.. --..|...+.+.|+-.++.++|...|+...+.+.. ....|+.+..-|....+...|++-
T Consensus 313 skLs~LA~~v~~---idK--yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVSN---IDK--YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHHH---hcc--CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 2221 1222221 112 23467778888999999999999999999987655 567889899999999999999999
Q ss_pred HHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCC
Q 005474 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 476 (695)
Q Consensus 398 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 476 (695)
++...+.. +.|-..|-.|.++|.-.+...-|+-.|++..+ ++| |...|.+|.++|.+.++.++|++.|......|
T Consensus 387 YRrAvdi~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 387 YRRAVDIN--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHhcC--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 99999865 78999999999999999999999999999998 455 89999999999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 005474 477 ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 508 (695)
Q Consensus 477 ~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~ 508 (695)
-. +...+..+...+.+.++ .+|.+.+++-.+
T Consensus 463 dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 463 DT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33 66778888888888888 888888776543
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=1.3e-10 Score=113.14 Aligned_cols=292 Identities=10% Similarity=0.033 Sum_probs=215.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 005474 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 362 (695)
.|+|..|+++..+-.+.+-. ....|..-..+-.+.|+.+.+-..+.+..+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57777777777776666543 34455555667777778888888877777654345666666677777778888888887
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005474 363 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD------SWTFSSMITICSCRGKVSEAEAMFNE 436 (695)
Q Consensus 363 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~ 436 (695)
.+++.+.+.. +........++|.+.|++.+...++..|.+.+..... ..+|+.+++-....+..+.-...|++
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777776555 5566677778888888888888888888877752221 23556666665555556665566666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhH
Q 005474 437 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY 515 (695)
Q Consensus 437 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~ 515 (695)
.... .+.++..-.+++.-+.++|+.++|.++.++..+.+..|. ...++ .+.+-++ +.-.+..+...+..|+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 5442 344566677788888899999999999999888777766 22222 3445555 7778888888888999999
Q ss_pred HHHHHhhhhcchhhHHHHHHHHHHhc-ccCccccchHHHHHHHHhcCCHHHHHHHHHHHHHcCcccCc
Q 005474 516 VVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 582 (695)
Q Consensus 516 ~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 582 (695)
....||+.+.+.+ .+.+|.+.|+.. ...++...|+-+.+++-+.|+.++|.+..++++..-..|+.
T Consensus 330 L~~tLG~L~~k~~-~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 330 LLSTLGRLALKNK-LWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred HHHHHHHHHHHhh-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 9999999988888 899999999865 67788889999999999999999999999999855544543
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=1.7e-13 Score=137.31 Aligned_cols=224 Identities=17% Similarity=0.190 Sum_probs=66.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 005474 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 320 (695)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 320 (695)
+...+...++++.|.+.++++...+ +-+...+..++.. ...+++++|.+++++..+.. ++...+..++..+.+.++
T Consensus 50 ~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~ 125 (280)
T PF13429_consen 50 LADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGD 125 (280)
T ss_dssp ------------------------------------------------------------------------H-HHHTT-
T ss_pred ccccccccccccccccccccccccc-ccccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhH
Confidence 3334444445555555555554433 1133344444444 34555555555554443321 233344444455555555
Q ss_pred hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005474 321 PWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399 (695)
Q Consensus 321 ~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 399 (695)
++++.++++.+.... ...+...|..+...+.+.|+.++|++.|++..+..+. |....+.++..+...|+.+++.++++
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~ 204 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALK 204 (280)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 555555555544321 2234444555555555555555555555555554322 34445555555555555555555555
Q ss_pred HhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 400 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
...+.. +.|...+..+..+|...|+.++|..+|++..+.. +.|......+..++...|+.++|..+.++.
T Consensus 205 ~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 205 RLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 544432 2333444555555555555555555555555421 124555555555555555555555555543
No 40
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=1.6e-10 Score=108.92 Aligned_cols=285 Identities=15% Similarity=0.178 Sum_probs=177.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCC------HHHHHHHHHHHHhcCCH
Q 005474 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD------ALTYSSMIDAYGRAGNV 251 (695)
Q Consensus 178 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~ 251 (695)
.++.++|.++|-+|.+.. +-+..+--+|-+.|.+.|..+.|+.+.+.+.++ || ......|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 456778888888887641 112223334556777788888888888777653 33 23344566677788888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCChHHHHHH
Q 005474 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTMGRAKRPWQVKTI 327 (695)
Q Consensus 252 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~ 327 (695)
|.|+.+|..+.+.+ ..-.....-|+..|-...+|++|+++-+++...+..+.. ..|.-|...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 88888888887755 345566777888888888888888888887776544332 2344445555556677777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC
Q 005474 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 407 (695)
Q Consensus 328 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (695)
+.+..+.+.+ .+..--.+.+.+...|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++....+..+.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 7777664322 2222334556667777777777777777776555455566667777777777777777777776643
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HcCCHhHHHHHHHHhh
Q 005474 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG---KAQRTDDVVRALNRLP 473 (695)
Q Consensus 408 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---~~g~~~~A~~~~~~m~ 473 (695)
+....-..+-+.-....-.+.|..++.+-... +|+...+..+|..-. ..|+..+-+.+++.|+
T Consensus 280 -~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 280 -TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred -CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 33333344444444444445555554444432 477777777766443 2344555555555554
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=1.3e-13 Score=138.19 Aligned_cols=23 Identities=13% Similarity=0.013 Sum_probs=3.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 005474 551 NCLIDLCVNLNLLENACKLLELG 573 (695)
Q Consensus 551 ~~L~~~~~~~g~~~~A~~~l~~~ 573 (695)
..+++++...|+.++|.++.+++
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHT---------------
T ss_pred ccccccccccccccccccccccc
Confidence 34444444444444444444443
No 42
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.49 E-value=7.3e-09 Score=106.43 Aligned_cols=385 Identities=11% Similarity=0.047 Sum_probs=265.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005474 178 CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGL 257 (695)
Q Consensus 178 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 257 (695)
..+.+.|.-++....+. ++.+...| -+|.+...++.|..++++..+. ++-+...|.+-...=-..|+.+...++
T Consensus 389 lE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 389 LEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred ccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 34455566666665554 22233333 3445566677777777777664 555677776666666677777777777
Q ss_pred HHHH----hhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005474 258 YDRA----RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN--MITYNNLLDTMGRAKRPWQVKTIYKEM 331 (695)
Q Consensus 258 ~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m 331 (695)
+++- ...|+..+...|-.=...|-..|..-.+..+....+..|+.-. ..||+.-...|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 6653 4457777777777777777777777777777777776665432 356777777788888888888888877
Q ss_pred HHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCH
Q 005474 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411 (695)
Q Consensus 332 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 411 (695)
++- ++.+...|...+..--..|..+.-..+|++....-. -....|-.....+-..|+...|..++.+..+.. +.+.
T Consensus 543 lqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnse 618 (913)
T KOG0495|consen 543 LQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSE 618 (913)
T ss_pred Hhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcH
Confidence 764 233556666666666667777888888887776533 355666666677777788888888888877755 4466
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH-HHHHHHHH
Q 005474 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNV 490 (695)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~ 490 (695)
..|-+-+..-.....++.|..+|.+... ..|+..+|.--+....-.+..++|++++++.++. -|+-. .|..+...
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQI 694 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHH
Confidence 7777777777888888888888887776 4477777777777777778888888888877743 56544 55555556
Q ss_pred HhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcc--cCccccchHHHHHHHHhcCCHHHHH
Q 005474 491 MTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS--KDVKKAYCNCLIDLCVNLNLLENAC 567 (695)
Q Consensus 491 ~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~--~~~~~~~~~~L~~~~~~~g~~~~A~ 567 (695)
+.+.+. +.|.+-|..-.+.-|+.....-+|+...-+.| .+-.|+.++++.. .+.+...|-..+.+-.+.|+.+.|.
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~-~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG-QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc-chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence 666666 77777776666777776666666766555556 6677888887663 2334457888888888999999888
Q ss_pred HHHHHHHHcC
Q 005474 568 KLLELGLTLE 577 (695)
Q Consensus 568 ~~l~~~~~~~ 577 (695)
.+..++++.-
T Consensus 774 ~lmakALQec 783 (913)
T KOG0495|consen 774 LLMAKALQEC 783 (913)
T ss_pred HHHHHHHHhC
Confidence 8888887543
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=4.6e-10 Score=111.46 Aligned_cols=217 Identities=13% Similarity=0.111 Sum_probs=157.4
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005474 350 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429 (695)
Q Consensus 350 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 429 (695)
+.-.|+.-.|..-|+..++....++. .|--+..+|.+..+.++.+..|....+.+ +-|..+|..-.+++.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHH
Confidence 34457888888888888876554333 26666777888888888888888888766 5566677777777777888888
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 005474 430 AEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVECV 506 (695)
Q Consensus 430 A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~-~~a~~~~~~~ 506 (695)
|..=|++.+. +.| ++..|-.+..+..+.+++++++..|++..+. -| -...|+.....+...++ ++|.+.|+..
T Consensus 413 A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 413 AIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 9888888887 445 5666777777777888899999999888754 34 34567777777777777 8889999888
Q ss_pred HHcCCChh------HH-H-HHHhhhhcchhhHHHHHHHHHHhc-ccCccc-cchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005474 507 EKSNSKLG------YV-V-KLLLEEQDIEGDFKKEATELFNSI-SKDVKK-AYCNCLIDLCVNLNLLENACKLLELGLT 575 (695)
Q Consensus 507 ~~~~p~~~------~~-~-~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~-~~~~~L~~~~~~~g~~~~A~~~l~~~~~ 575 (695)
.++.|+.. .. + ..+.-... .+.+.+|.+++++. ..+|.- ..|.+|+....+.|+.++|+++|++...
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~qw--k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQW--KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhch--hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888722 11 1 11111111 23678888888766 445543 3788899999999999999999998764
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.48 E-value=5.5e-10 Score=119.01 Aligned_cols=381 Identities=11% Similarity=0.085 Sum_probs=229.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC
Q 005474 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250 (695)
Q Consensus 171 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 250 (695)
....+...|++++|.+++.+.++.. +.+...|.+|-..|-..|+.+++...+-..-.. .+-|...|..+.....+.|+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhccc
Confidence 3344455599999999999998773 457788999999999999999998776444332 23477889999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----hHHHHHHHHHhcCChHHHHH
Q 005474 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI----TYNNLLDTMGRAKRPWQVKT 326 (695)
Q Consensus 251 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~ 326 (695)
++.|.-.|.++++.. +++...+---+..|-+.|+...|.+-|.++.+...+.|.. ....++..+...++.+.|.+
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999875 5566666667788999999999999999998864322222 22334556667777788888
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 005474 327 IYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405 (695)
Q Consensus 327 ~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 405 (695)
.++..... +-..+...++.++..|.+...++.|......+......+|..-+..- .. ++ .+- ..+.... .+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----~~-~~-~~~-~~~~~~~-~~ 373 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----ER-RR-EEP-NALCEVG-KE 373 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----hh-cc-ccc-cccccCC-CC
Confidence 87776652 22345567778888888888888888877777664333333322100 00 00 000 0000000 01
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHH
Q 005474 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF--EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483 (695)
Q Consensus 406 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~ 483 (695)
..++...+ .++-++.+....+...-+.....+..+ .-+...|.-+..+|...|++.+|+.+|..+......-+...
T Consensus 374 -~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 374 -LSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred -CCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 02222221 111122233333333333333333332 22445556666666666666666666666654433334445
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccC-----------ccccchH
Q 005474 484 CGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD-----------VKKAYCN 551 (695)
Q Consensus 484 ~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~-----------~~~~~~~ 551 (695)
|.-+..++...|. ++|.+.++.+....|++..+.-.|+..+.+.| ..++|.+.+..+..+ ++..+.-
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g-~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLG-NHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC-CHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 5555555555555 66666666666666666666555555555555 556666666554211 1111223
Q ss_pred HHHHHHHhcCCHHH
Q 005474 552 CLIDLCVNLNLLEN 565 (695)
Q Consensus 552 ~L~~~~~~~g~~~~ 565 (695)
...+.+...|+.++
T Consensus 531 ~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 531 HRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHhhhHHH
Confidence 44566777777665
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.46 E-value=5.2e-09 Score=111.78 Aligned_cols=327 Identities=11% Similarity=0.104 Sum_probs=146.5
Q ss_pred HhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 005474 140 NNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219 (695)
Q Consensus 140 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 219 (695)
...++..+++..+-.+-... +.|...|-.+.....+.|.+++|.-.|.+.++.. +++...+---...|-+.|+...|
T Consensus 184 EqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~A 260 (895)
T KOG2076|consen 184 EQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRA 260 (895)
T ss_pred HHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHH
Confidence 33344444444443333322 2233445555555555555555555555555442 22222333333445555555555
Q ss_pred HHHHHhchhCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005474 220 VEWFERMPSFGCDPDALTY----SSMIDAYGRAGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294 (695)
Q Consensus 220 ~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 294 (695)
.+-|.++.....+.|..-+ ..+++.+...++-+.|.+.++..... +-..+...++.++..|.+...++.|.....
T Consensus 261 m~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~ 340 (895)
T KOG2076|consen 261 METFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIV 340 (895)
T ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHH
Confidence 5555555543211111111 12233344444445555555544431 112233445555555555555555555555
Q ss_pred HHHHcCC---------------------------CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHH
Q 005474 295 EMKAIGV---------------------------KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYAS 345 (695)
Q Consensus 295 ~m~~~g~---------------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~ 345 (695)
++..... .++...+ -+.-++.+....+....+...+.+.. +.-+...|.-
T Consensus 341 ~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d 419 (895)
T KOG2076|consen 341 DDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLD 419 (895)
T ss_pred HHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHH
Confidence 5443111 1111110 11112222233333333333333333 2223444555
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcC
Q 005474 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425 (695)
Q Consensus 346 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 425 (695)
+.++|.+.|++.+|+.+|..+......-+...|.-+..+|...|.+++|.+.|+.+.... +.+...-..|-..+.+.|
T Consensus 420 ~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g 497 (895)
T KOG2076|consen 420 LADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLG 497 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcC
Confidence 555666666666666666665554333345555555666666666666666666655543 233344444555555566
Q ss_pred CHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 426 KVSEAEAMFNEMLE--------AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 426 ~~~~A~~~~~~m~~--------~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
+.++|.+.+..|.. .+..|+....-.....|.+.|+.++=+.+...|
T Consensus 498 ~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 498 NHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred CHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 66666666555431 122233333333444455555555544443333
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1e-09 Score=109.01 Aligned_cols=372 Identities=14% Similarity=0.095 Sum_probs=246.4
Q ss_pred CChHHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHH
Q 005474 143 TNPDTAALALTYFTNKLKASKE-VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDN-VTFSTLISCARMNNLPNKAV 220 (695)
Q Consensus 143 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~ 220 (695)
+++++|++.+.++.. ..|| .+.|.....+|...|+|+++.+-....++. .|+- ..+.--.+++-..|++++|+
T Consensus 129 kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~eal 203 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEAL 203 (606)
T ss_pred ccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHHH
Confidence 359999999999987 4677 788999999999999999998887777654 3332 23333334666677777765
Q ss_pred HHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------H-HhhCC--CCCCHHHHHHHHHHH---------
Q 005474 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYD--------R-ARNEK--WRIDPNAFSTLIKLY--------- 280 (695)
Q Consensus 221 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~-~~~~g--~~~~~~~~~~li~~~--------- 280 (695)
.= .|...++.++....-.-.+.+++. + +.+.+ +-|......+....+
T Consensus 204 ~D-------------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 204 FD-------------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred Hh-------------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 31 122222222222221112222221 1 11111 122222222222111
Q ss_pred --------------HH--cC---ChHHHHHHHHHHHHcC-CCC--C---------HHhHHHHHHHHHhcCChHHHHHHHH
Q 005474 281 --------------GT--AG---NFDGCLNVYEEMKAIG-VKP--N---------MITYNNLLDTMGRAKRPWQVKTIYK 329 (695)
Q Consensus 281 --------------~~--~g---~~~~A~~~~~~m~~~g-~~p--~---------~~~~~~li~~~~~~g~~~~a~~~~~ 329 (695)
.. .+ .+.+|.+.+.+-.... ..+ + ..+...-...+.-.|+.-.|..-|+
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 10 11 2333333333221100 011 1 1111111222445688899999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC
Q 005474 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 409 (695)
Q Consensus 330 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 409 (695)
..++....++. .|--+..+|....+.++..+.|++..+.+.. +..+|..=.+.+.-.+++++|..=|++..... +-
T Consensus 351 ~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--pe 426 (606)
T KOG0547|consen 351 AAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD--PE 426 (606)
T ss_pred HHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--hh
Confidence 99987644333 2777788899999999999999999887655 55566666777778889999999999998865 55
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCC-------H-
Q 005474 410 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-------D- 481 (695)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-------~- 481 (695)
+...|..+..+.-+.+++++++..|++.++. ++.-+..|+.....+...++++.|.+.|+..++. .|+ .
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~ 503 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAA 503 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccch
Confidence 6777888888888999999999999999885 5557889999999999999999999999988754 332 1
Q ss_pred -HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc
Q 005474 482 -RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 541 (695)
Q Consensus 482 -~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~ 541 (695)
.+-..++.. .-.++ .+|..+++++.+++|.-..+...|+....++| ..+||+++|++.
T Consensus 504 plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~-~i~eAielFEks 563 (606)
T KOG0547|consen 504 PLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG-KIDEAIELFEKS 563 (606)
T ss_pred hhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 122222211 12245 99999999999999999999999998888888 889999999864
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=4e-10 Score=106.36 Aligned_cols=270 Identities=18% Similarity=0.168 Sum_probs=147.9
Q ss_pred cCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH------HHHHHHHHHHHcCCh
Q 005474 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPN------AFSTLIKLYGTAGNF 286 (695)
Q Consensus 213 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~------~~~~li~~~~~~g~~ 286 (695)
.++.++|+++|-+|.+.. +-+..+--+|.+.|-+.|.+|.|+++++.+.++ ||.. +...|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 456677777777776521 113334445666666677777777777766653 3321 223344445555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 005474 287 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366 (695)
Q Consensus 287 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 366 (695)
|.|+++|..+.+.|. .-...... |+..|-+..++++|+++-+++
T Consensus 124 DRAE~~f~~L~de~e-fa~~Alqq-----------------------------------Ll~IYQ~treW~KAId~A~~L 167 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQ-----------------------------------LLNIYQATREWEKAIDVAERL 167 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHH-----------------------------------HHHHHHHhhHHHHHHHHHHHH
Confidence 555555555554321 12233344 444455555555555554444
Q ss_pred HHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 005474 367 KEKGMQLSV----TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442 (695)
Q Consensus 367 ~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 442 (695)
.+.+.++.. ..|.-|...+....+.+.|..++.+..+.+ +..+..-..+.+.+...|+++.|.+.++...+.+.
T Consensus 168 ~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 168 VKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNP 245 (389)
T ss_pred HHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhCh
Confidence 443322221 223344444555566666777776666554 33444444555666677777777777777776554
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHhh
Q 005474 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLE 522 (695)
Q Consensus 443 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 522 (695)
.--..+...|..+|...|+.++....+.++.+....++.....+=+ .....|.++|..++.+-....|+.-.+..++.+
T Consensus 246 ~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~l-ie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 246 EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADL-IELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHH-HHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 4445566677777777777777777777776543333333211111 123445566666666666667776666666665
Q ss_pred hhc
Q 005474 523 EQD 525 (695)
Q Consensus 523 ~~~ 525 (695)
...
T Consensus 325 ~l~ 327 (389)
T COG2956 325 HLA 327 (389)
T ss_pred hhc
Confidence 544
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=9.9e-10 Score=107.02 Aligned_cols=295 Identities=11% Similarity=0.119 Sum_probs=230.1
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 005474 169 NVTMKVFRK--CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246 (695)
Q Consensus 169 ~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 246 (695)
..+..++.+ .|+|.+|+++..+-.+.+-.| ...|..-..+.-+.|+.+.+-.++.+.-+.--.++...+-+......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 445555543 689999999998877765332 33455555678889999999999999887533566777788888899
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HhHHHHHHHHHhcC
Q 005474 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM-------ITYNNLLDTMGRAK 319 (695)
Q Consensus 247 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g 319 (695)
..|+++.|..-++++.+.+ +.++.+......+|.+.|++.+...++.+|.+.|.--|. .+|+.+++-....+
T Consensus 165 ~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 165 NRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred hCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999998876 678889999999999999999999999999998865443 46777777766666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005474 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399 (695)
Q Consensus 320 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 399 (695)
..+.-...++..... .+-+...-.+++.-+.++|+.++|.++..+..+++..+... ..-.+.+-++.+.-++..+
T Consensus 244 ~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 244 GSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred cchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHH
Confidence 666666666665432 23456666778888999999999999999998887766622 2234566777777777766
Q ss_pred HhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhh
Q 005474 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 400 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
.-.+.. +.+...+.+|...|.+++.+.+|...|+...+ ..|+..+|+.+..+|.+.|+..+|.++.++...
T Consensus 319 ~~l~~h--~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 319 KWLKQH--PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHhC--CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 655443 44557888999999999999999999998877 568999999999999999999999999988763
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=8.5e-11 Score=121.38 Aligned_cols=284 Identities=13% Similarity=0.060 Sum_probs=184.9
Q ss_pred ChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCChHHHHH-
Q 005474 215 LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK--WRIDPNAFSTLIKLYGTAGNFDGCLN- 291 (695)
Q Consensus 215 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~- 291 (695)
+..+|+..|+++... +.-+..+...+..+|...+++++|+++|+.+.+.. ..-+..+|.+.+.-+-+. -++.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 346777777774443 22234566667777777788888888887776542 112455666666544321 1222
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 005474 292 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370 (695)
Q Consensus 292 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 370 (695)
+-+++.+.. +-...+|.++.+.|.-+++.+.|++.|++..+.. | ...+|+.+..-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~- 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV- 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-
Confidence 222233321 2256778888888888888888888887777643 4 5677777777777777788888887776654
Q ss_pred CCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 005474 371 MQLSVTLYN---TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 447 (695)
Q Consensus 371 ~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 447 (695)
|..+|| -|.-.|.+.++++.|+-.|+...+.+ +.+.+....+...+-+.|+.|+|++++++......+ |+.
T Consensus 485 ---~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 485 ---DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred ---CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 444443 45667778888888888888777755 556666677777777788888888888877764322 444
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhH
Q 005474 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY 515 (695)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~ 515 (695)
.--..+..+...+++++|+..|+++++. .|+.. .|..+...|.+.|. +.|..-|--+..++|.-..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 4444555666777888888888887743 66544 46666667777777 7777777777777776544
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=1.4e-10 Score=119.81 Aligned_cols=283 Identities=13% Similarity=0.106 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHhchhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005474 180 DLDKAERLFDDMLDRGVKPDN-VTFSTLISCARMNNLPNKAVEWFERMPSFG--CDPDALTYSSMIDAYGRAGNVEMAFG 256 (695)
Q Consensus 180 ~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~ 256 (695)
+..+|+.+|..+.+. .+|. ....-+-.+|...+++++|.++|+.+.+.. ..-+..+|.+.+-.+-+. -++.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 346677777665443 2233 333334456777777777777777666532 112556666665544321 1222
Q ss_pred HH-HHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005474 257 LY-DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334 (695)
Q Consensus 257 ~~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 334 (695)
.+ +.+.+.. +-.+.+|-++.++|.-.++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+.
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~- 483 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG- 483 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-
Confidence 22 2222222 445677777777777777777777777777764 33 566777777777777777777777776655
Q ss_pred CCCCCHHHHH---HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCH
Q 005474 335 GLSPNWNTYA---SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 411 (695)
Q Consensus 335 ~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 411 (695)
.|...|+ -+...|.+.++++.|+-.|++..+.+.. +.+....+...+.+.|+.++|++++++..... +.|+
T Consensus 484 ---~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~ 557 (638)
T KOG1126|consen 484 ---VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNP 557 (638)
T ss_pred ---CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCc
Confidence 2333333 4566677777777777777777776544 55555666777777778888888887777655 3444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCC
Q 005474 412 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480 (695)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 480 (695)
..--..+..+...++.++|++.++++++ +.| +...|..+...|.+.|+.+.|+.-|.-|.+...++.
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 4444445556667777888888888777 344 455666777778888888888877777775544443
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.1e-08 Score=101.26 Aligned_cols=258 Identities=12% Similarity=0.071 Sum_probs=205.2
Q ss_pred HHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCC
Q 005474 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKW--RIDPNAFSTLIKLYGTAGN 285 (695)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~ 285 (695)
.++....+.+++++-.+.....|+.-+...-+....+.-...++++|+.+|+++.+... --|..+|..++ |.+..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 46667778889988888888888776666556666666778899999999999998741 12556776665 333332
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 005474 286 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 365 (695)
Q Consensus 286 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 365 (695)
- .+..+-+-...--+--..|+..+.+.|.-.++.++|...|++..+.+. .....|+.+..-|...++...|.+-++.
T Consensus 313 s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 S--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred H--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 1 122222221111123456788888999999999999999999998753 2567888899999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 005474 366 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445 (695)
Q Consensus 366 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 445 (695)
..+-+.. |-..|..|.++|.-.+...-|+-.|++..+-. +.|...|.+|.++|.+.++.++|.+.|.+....|- .+
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te 465 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TE 465 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cc
Confidence 9987554 88899999999999999999999999998854 66899999999999999999999999999998653 36
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhh
Q 005474 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 446 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
...|..|.+.|-+.++.++|.+.|++-++
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 68899999999999999999999987664
No 52
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=7.7e-08 Score=93.94 Aligned_cols=287 Identities=15% Similarity=0.060 Sum_probs=211.8
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhCCChHHHH
Q 005474 283 AGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT-YASLLRAYGRARYGEDTL 360 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~ 360 (695)
.++...|...+-.+.... ++-|+.....+...+...|+.++|...|+.....+ |+..+ .....-.+.+.|++++..
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHH
Confidence 455555555544443332 44567788888999999999999999999887642 33322 112222345678888887
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005474 361 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440 (695)
Q Consensus 361 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 440 (695)
.+...+....- -+...|-.-........+++.|+.+-++..+.+ ..+...|..-...+...|+.++|.-.|+..+.
T Consensus 287 ~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~- 362 (564)
T KOG1174|consen 287 ALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQM- 362 (564)
T ss_pred HHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHh-
Confidence 77777765421 133444444455566788999999998888765 45666666666778889999999999999887
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHH-HHHhcC--CHHHHHHHHHHHHHcCCChhHH
Q 005474 441 GFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQT--PKEELGKLVECVEKSNSKLGYV 516 (695)
Q Consensus 441 g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll-~~~~~~--~~~~a~~~~~~~~~~~p~~~~~ 516 (695)
+.| +...|..|+..|...|++.+|..+-+..... +.-+..+...+. .+|... +.+.|.+++++..+++|.+..+
T Consensus 363 -Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 363 -LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred -cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHH
Confidence 455 7899999999999999999999888876532 222444444442 344433 3499999999999999999999
Q ss_pred HHHHhhhhcchhhHHHHHHHHHHhc-ccCccccchHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Q 005474 517 VKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEV 578 (695)
Q Consensus 517 ~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~ 578 (695)
+..+++.+...| ..+.+..++++. ...+|....+.|++.+...+.+.+|...|..++...+
T Consensus 441 V~~~AEL~~~Eg-~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 441 VNLIAELCQVEG-PTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 999998777667 889999999765 5668888889999999999999999999999987653
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.27 E-value=4.1e-10 Score=119.21 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005474 372 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 451 (695)
Q Consensus 372 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 451 (695)
.|+..+|.+++..-...|+.+.|..++.+|++.|. +.+..-|-.|+-+ .++..-+..++..|.+.|+.|+..|+..
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf-pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF-PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC-Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHH
Confidence 57888888888888888999999999999998886 6777766677654 7888888888888888899999999888
Q ss_pred HHHHHHHcCC
Q 005474 452 LIQCYGKAQR 461 (695)
Q Consensus 452 li~~~~~~g~ 461 (695)
.+..+.+.|.
T Consensus 277 yvip~l~N~~ 286 (1088)
T KOG4318|consen 277 YVIPQLSNGQ 286 (1088)
T ss_pred HHHhhhcchh
Confidence 8887777555
No 54
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=6.1e-07 Score=89.29 Aligned_cols=431 Identities=12% Similarity=0.108 Sum_probs=304.5
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCC-HHHHHHH
Q 005474 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD-ALTYSSM 241 (695)
Q Consensus 163 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 241 (695)
-+...|-....-=..++++..|..+|+..+.-. ..+...|--.+.+=.++..++.|..++++.+.. -|- ...|--.
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY 147 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHH
Confidence 355556665555667889999999999998754 346677777888888999999999999998874 333 3345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh
Q 005474 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321 (695)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 321 (695)
+.+=-..|++..|.++|++-.+- .|+...|++.|+.=.+...++.|..++++.+-. .|++.+|--....=.+.|..
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcH
Confidence 66666789999999999998874 899999999999999999999999999999864 69999999998888999999
Q ss_pred HHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHH-
Q 005474 322 WQVKTIYKEMTDN-GL-SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS-VTLYNTLLAMCADVGYTDEAFEI- 397 (695)
Q Consensus 322 ~~a~~~~~~m~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~- 397 (695)
..+..+|....+. |- .-+...+.++...-.++..++.|.-+|+-.++.-.+-. ...|..+..---+-|+.....+.
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 9999999987753 11 11234455555555677889999999998877533221 34555555444455664443333
Q ss_pred -------HHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-----HH---HHcC
Q 005474 398 -------FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL--FVLTSLIQ-----CY---GKAQ 460 (695)
Q Consensus 398 -------~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~-----~~---~~~g 460 (695)
++.+.+.+ +-|-.+|--.++.-...|+.+...++|++.+.. ++|-. ..|.-.|- ++ ....
T Consensus 304 v~KRk~qYE~~v~~n--p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKN--PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred hhhhhhHHHHHHHhC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555554 568888888888888899999999999999874 44522 22322221 11 3468
Q ss_pred CHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhc----CCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHH
Q 005474 461 RTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQ----TPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEA 534 (695)
Q Consensus 461 ~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~----~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA 534 (695)
+.+.+.++++..++ +.| ...||.-+--.+++ +.+ ..|.+++..++..-|.+-.+-..+ ....+.+ ..|..
T Consensus 381 d~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YI-elElqL~-efDRc 456 (677)
T KOG1915|consen 381 DVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYI-ELELQLR-EFDRC 456 (677)
T ss_pred hHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHH-HHHHHHh-hHHHH
Confidence 89999999999886 456 45577766555543 333 888999999998888865443222 2222224 56778
Q ss_pred HHHHHhc-ccCcc-ccchHHHHHHHHhcCCHHHHHHHHHHHHHcCcccCccccCccceeecccc-CChHHHHHHHHHHHH
Q 005474 535 TELFNSI-SKDVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKS-LSLGAALTALHIWIN 611 (695)
Q Consensus 535 ~~l~~~~-~~~~~-~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~w~~~l~~-~s~G~~~~a~~~w~~ 611 (695)
+.++++. ...|. -.+|.-.+..-...|+.++|+.+|+.|+.... ... -...|+.-+.. .+.|.-+.|...+..
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~---ldm-pellwkaYIdFEi~~~E~ekaR~LYer 532 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA---LDM-PELLWKAYIDFEIEEGEFEKARALYER 532 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc---ccc-HHHHHHHhhhhhhhcchHHHHHHHHHH
Confidence 8888765 44454 34788888888899999999999999987632 111 23456532222 355666655544433
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.25 E-value=4.6e-09 Score=111.49 Aligned_cols=247 Identities=16% Similarity=0.164 Sum_probs=177.2
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHH
Q 005474 160 KASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239 (695)
Q Consensus 160 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 239 (695)
++.||.++|..+|.-|+..|+.+.|- +|.-|.-+..+.+...|+.++.+....++.+.+. .|...||.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 47899999999999999999999998 9999988777778899999999998888887775 68899999
Q ss_pred HHHHHHHhcCCHHH---HHHHHHHHh----hCCCCCCHHHH--------------HHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 240 SMIDAYGRAGNVEM---AFGLYDRAR----NEKWRIDPNAF--------------STLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 240 ~li~~~~~~g~~~~---A~~~~~~~~----~~g~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
.|..+|...||+.. +.+.++.+. ..|+.....-+ ...+....-.|-++.+++++..+..
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 99999999999654 333222222 22321111111 1223333445566666666655532
Q ss_pred cCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 005474 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378 (695)
Q Consensus 299 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 378 (695)
.... . ++..+++-+... ..-.+++.+......-.++..+|.++++.-..+|+.+.|..++.+|+++|++.+..-|
T Consensus 168 sa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 168 SAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred cccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 2110 0 111123333322 2333444444333222589999999999999999999999999999999999998888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCH
Q 005474 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427 (695)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 427 (695)
-.|+-+ .++...++.+++-|.+.|+ .|+..|+...+..+..+|..
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv-~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGV-QPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcC-CCCcchhHHHHHhhhcchhh
Confidence 888766 8889999999999999996 99999999888777776653
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=1.2e-08 Score=112.04 Aligned_cols=265 Identities=10% Similarity=-0.011 Sum_probs=182.1
Q ss_pred CHHHHHHHHHHHHH-----cCChhHHHHHHHhchhCCCCCC-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHhh
Q 005474 199 DNVTFSTLISCARM-----NNLPNKAVEWFERMPSFGCDPD-ALTYSSMIDAYG---------RAGNVEMAFGLYDRARN 263 (695)
Q Consensus 199 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~ 263 (695)
+...|...+.+... .+..++|++.|++..+. .|+ ...|..+..+|. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45555555554322 12457888888888774 453 455655555443 22457899999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 005474 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343 (695)
Q Consensus 264 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 343 (695)
.. +-+..++..+...+...|++++|...|++..+.+. .+...+..+...+...|++++|...+++..+.... +...+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 75 55778888888888999999999999999988742 24667788888899999999999999999886533 22233
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHH
Q 005474 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423 (695)
Q Consensus 344 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 423 (695)
..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...+.++.... ..+....+.+...|+.
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhc
Confidence 33444566788999999999988765433345566777888889999999999998876643 2334445556666777
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhC
Q 005474 424 RGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475 (695)
Q Consensus 424 ~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 475 (695)
.| ++|...++.+.+. .-.+....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 77 4777777777652 112222222 33445556777777666 777654
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=8.7e-09 Score=113.17 Aligned_cols=252 Identities=12% Similarity=0.012 Sum_probs=179.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 005474 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT---------AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319 (695)
Q Consensus 249 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 319 (695)
+++++|.+.|++..+.. +-+...|..+..+|.. .+++++|...+++..+.... +...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 34689999999999874 3345566666655542 24478999999999987532 6778888888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005474 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399 (695)
Q Consensus 320 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 399 (695)
++++|...|++..+.+. .+...+..+...|...|++++|...+++..+.... +...+..++..+...|++++|+..++
T Consensus 353 ~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999999998652 34667888889999999999999999999887554 22333344555777899999999999
Q ss_pred HhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHhhh-CCC
Q 005474 400 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPE-LGI 477 (695)
Q Consensus 400 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~ 477 (695)
++..... +.+...+..+..++...|+.++|...+.++... .|+ ....+.+...|+..| ++|...++.+.+ ...
T Consensus 431 ~~l~~~~-p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 431 ELRSQHL-QDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHhcc-ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 9876541 224555777888889999999999999988663 343 344555556677777 588888887763 233
Q ss_pred CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005474 478 TPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 511 (695)
Q Consensus 478 ~pd~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~p 511 (695)
.+....+..++ +.-.|+.+...+++++.+.+.
T Consensus 506 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~ 537 (553)
T PRK12370 506 IDNNPGLLPLV--LVAHGEAIAEKMWNKFKNEDN 537 (553)
T ss_pred hhcCchHHHHH--HHHHhhhHHHHHHHHhhccch
Confidence 34333333333 344566455555577765543
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=8.1e-09 Score=100.31 Aligned_cols=165 Identities=14% Similarity=0.052 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 005474 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314 (695)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 314 (695)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 3444555555555566666666555555432 23344555555555555555555555555554321 133344444444
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005474 315 MGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393 (695)
Q Consensus 315 ~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 393 (695)
+...|++++|.+.+++....... .....+..+...+...|++++|.+.|++..+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 55555555555555554432111 11222333333444444444444444444332211 22333333444444444444
Q ss_pred HHHHHHHhH
Q 005474 394 AFEIFEDMK 402 (695)
Q Consensus 394 A~~~~~~m~ 402 (695)
|...+++..
T Consensus 188 A~~~~~~~~ 196 (234)
T TIGR02521 188 ARAYLERYQ 196 (234)
T ss_pred HHHHHHHHH
Confidence 444444433
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.24 E-value=1.6e-06 Score=89.52 Aligned_cols=193 Identities=10% Similarity=0.113 Sum_probs=118.1
Q ss_pred cCChHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc
Q 005474 318 AKRPWQVKTIYKEMTDNGLSP------NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS---VTLYNTLLAMCADV 388 (695)
Q Consensus 318 ~g~~~~a~~~~~~m~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~ 388 (695)
.|+..+-...+.+..+. +.| -...|..+.+.|-..|+++.|..+|++..+...+-- ..+|..-..+-.++
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 34555666666666543 222 134577788889999999999999998877543311 23455555555667
Q ss_pred CCHHHHHHHHHHhHhCCC----------CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005474 389 GYTDEAFEIFEDMKSSEN----------CQ------PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452 (695)
Q Consensus 389 g~~~~A~~~~~~m~~~~~----------~~------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 452 (695)
.+++.|+++++....... -+ .+...|...++.--..|-++....+++++++..+. ++...-..
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 788888888877654211 00 01234555566666778888888888888885543 22222222
Q ss_pred HHHHHHcCCHhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhc----CCHHHHHHHHHHHHHcCCC
Q 005474 453 IQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQ----TPKEELGKLVECVEKSNSK 512 (695)
Q Consensus 453 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~~~~----~~~~~a~~~~~~~~~~~p~ 512 (695)
...+-.+..++++.+++++-+..---|+.. .|+..+.-+.+ ...+.+..+|+++.+.-|.
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 333456677788888888766543345543 45554443322 2228888888888876553
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=8.8e-09 Score=100.06 Aligned_cols=201 Identities=9% Similarity=0.028 Sum_probs=151.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005474 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348 (695)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 348 (695)
....+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 45677778888889999999999999887753 22466777788888888999999999988877643 35566777788
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCH
Q 005474 349 AYGRARYGEDTLSVYREMKEKGMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427 (695)
Q Consensus 349 ~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 427 (695)
.|...|++++|.+.|++..+.... .....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCH
Confidence 888888888888888888764322 234456667777888888888888888887654 34566777788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhh
Q 005474 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 428 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
++|.+.+++..+. ...+...+..++..+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888888775 234566666777777788888888888777653
No 61
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=7.1e-08 Score=90.15 Aligned_cols=402 Identities=13% Similarity=0.094 Sum_probs=193.2
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCChhHHHHHH
Q 005474 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWF 223 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~ 223 (695)
+.+|++++....... +.+......+..+|-...++..|-..|+.+-.. .|...-|...- ..+-+.+.+.+|+.+.
T Consensus 26 y~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 26 YADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred HHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 555555555544432 224444555555555555566665555555443 33443333222 2444455555555555
Q ss_pred HhchhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 005474 224 ERMPSFGCDPDALTYSSMIDAY--GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 301 (695)
Q Consensus 224 ~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 301 (695)
..|... ++...-..-+.+. ...+++..+..+++++...| +..+.+...-...+.|++++|++-|+...+.+-
T Consensus 102 ~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 102 FLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 555431 1111111111111 12344555555555544322 233333333334455555555555555544332
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 005474 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT----YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 377 (695)
Q Consensus 302 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 377 (695)
--....||.-+. ..+.|+++.|.+...+++++|++..... -+-.+++-. .|+ -. .|...+ -+..
T Consensus 176 yqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgN---t~----~lh~Sa---l~eA 243 (459)
T KOG4340|consen 176 YQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGN---TL----VLHQSA---LVEA 243 (459)
T ss_pred CCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccc---hH----HHHHHH---HHHH
Confidence 223344443332 2344555555555555555554311100 000000000 000 00 000000 0123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005474 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457 (695)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 457 (695)
+|.-...+.+.|+++.|.+-+..|.-......|++|...+.-.= -.+++.+..+-++-+.+.+. -...||..++-.||
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHh
Confidence 33334456678889999988888865443366777776554221 23445555555566665432 25678888888899
Q ss_pred HcCCHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH--HHHHHHHHHHHHc-----------------CCChhHHH
Q 005474 458 KAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK--EELGKLVECVEKS-----------------NSKLGYVV 517 (695)
Q Consensus 458 ~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~-----------------~p~~~~~~ 517 (695)
+..-++-|-.++-+-......- +...| -++.++.-+.. +++.+-++.+.+. +-++..+.
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R 400 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIR 400 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 9998888888886643222221 22222 34555554443 6666654433211 00111111
Q ss_pred HHHhhhhcchhhHHHHHHHHHHhcccCccccchHHHHHHHHhcCCHHHHHHHHHHHHHcCcccCccccCccceeecc
Q 005474 518 KLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHL 594 (695)
Q Consensus 518 ~~l~~~~~~~g~~~~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~w~~~l 594 (695)
+.+- .++++.+++ -++.-+..|.+|+..++..++++|..-.++ ......|++++
T Consensus 401 ~ai~--------~Yd~~LE~Y--------LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef-------C~ehd~WkLNv 454 (459)
T KOG4340|consen 401 KAVN--------EYDETLEKY--------LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF-------CNDHDVWKLNV 454 (459)
T ss_pred HHHH--------HHHHHHHHH--------HHHHHHHHHhhccccccHHHHHHHHHHHhh-------hcccceeeecc
Confidence 1110 123333322 124456779999999999999999886654 23456788754
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.2e-07 Score=96.62 Aligned_cols=285 Identities=8% Similarity=0.017 Sum_probs=214.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 005474 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310 (695)
Q Consensus 231 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 310 (695)
..-+........+-+...+++.+..++.+.+.+.. ++....+..-|..+...|+..+-..+=.+|++.- +-...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 34455666666677778889999999999988765 6677777777888889999888888888888763 235788888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 005474 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS-VTLYNTLLAMCADVG 389 (695)
Q Consensus 311 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g 389 (695)
+.-.|...|++.+|++.|.+....... =...|-.+...|+-.|..|+|+..+...-+.=.... +..| +.--|.+.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhc
Confidence 888888889999999999887654321 235677788888888999999988887655311111 1222 334577788
Q ss_pred CHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHHcCCHh
Q 005474 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA--GFE----PNLFVLTSLIQCYGKAQRTD 463 (695)
Q Consensus 390 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~----p~~~~~~~li~~~~~~g~~~ 463 (695)
+++.|.+.|.+..... +.|+...+-+.-.....+.+.+|..+|+..+.. .+. .-..+++.|..+|.+.++++
T Consensus 395 n~kLAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred cHHHHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 9999999998887643 778888888877777788899999999887631 011 13456788888999999999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhh
Q 005474 464 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEE 523 (695)
Q Consensus 464 ~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~ 523 (695)
+|+..+++.+... .-|..++.++.-.+...|. +.|...|.+...++|++..+..+|+.+
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999887542 2366778888888888888 999999999999999887777777653
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=4.5e-11 Score=84.13 Aligned_cols=49 Identities=33% Similarity=0.607 Sum_probs=35.5
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005474 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211 (695)
Q Consensus 163 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 211 (695)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5677777777777777777777777777777777777777777777665
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.18 E-value=1.2e-06 Score=90.79 Aligned_cols=436 Identities=13% Similarity=0.080 Sum_probs=268.8
Q ss_pred HhhHHHHHHHhCCCCCHHHH-HHHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005474 116 EDDVFSVLRCLGDDFLEQDC-VIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR 194 (695)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 194 (695)
-....++|..++..+..... -..++.+++-++|.+......+. ...+.++|.++.-.+...+++++|++.|......
T Consensus 27 LK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 27 LKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI 104 (700)
T ss_pred HHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhcc--CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 33445566655544332221 14678888899999988887663 3567889999998888899999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHHHH
Q 005474 195 GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK-WRIDPNAF 273 (695)
Q Consensus 195 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~ 273 (695)
+ +-|...|.-+--.-++.++++.....-..+.+.. +-....|..+..++.-.|++..|..++++..+.. -.|+...|
T Consensus 105 ~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~ 182 (700)
T KOG1156|consen 105 E-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDY 182 (700)
T ss_pred C-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHH
Confidence 3 3355667666666667777777776666665531 2245667778888888899999999999888764 24666665
Q ss_pred HHHH------HHHHHcCChHHHHHHHHHHHHcCCCCCHHh-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005474 274 STLI------KLYGTAGNFDGCLNVYEEMKAIGVKPNMIT-YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346 (695)
Q Consensus 274 ~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 346 (695)
.-.. ....+.|..++|++.+..-...- .|... -.+-...+.+.+++++|..++..++..+ ||..-|...
T Consensus 183 e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~ 258 (700)
T KOG1156|consen 183 EHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEG 258 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHH
Confidence 4433 34456788888888887765431 13332 2344667889999999999999999865 666666554
Q ss_pred HH-HHHhCCChHHHH-HHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHH
Q 005474 347 LR-AYGRARYGEDTL-SVYREMKEKG---MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421 (695)
Q Consensus 347 i~-~~~~~g~~~~A~-~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 421 (695)
+. ++.+-.+..++. .+|....+.- -.|-....+ ......-.+..-.++..+.+.|+ ++ ++..+...|
T Consensus 259 l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls----vl~~eel~~~vdkyL~~~l~Kg~-p~---vf~dl~SLy 330 (700)
T KOG1156|consen 259 LEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS----VLNGEELKEIVDKYLRPLLSKGV-PS---VFKDLRSLY 330 (700)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH----HhCcchhHHHHHHHHHHHhhcCC-Cc---hhhhhHHHH
Confidence 44 443444444444 5666554431 111111111 11111123344455566666663 22 344444444
Q ss_pred HHcCCHHHHHHHHHHHHH----CC----------CCCCHHHHH--HHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH-HH
Q 005474 422 SCRGKVSEAEAMFNEMLE----AG----------FEPNLFVLT--SLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FC 484 (695)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~----~g----------~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~ 484 (695)
-.-...+-..++.-.+.. .| -+|....|+ .++..|-+.|+++.|..+++..+ +..|+.+ .|
T Consensus 331 k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI--dHTPTliEly 408 (700)
T KOG1156|consen 331 KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI--DHTPTLIELY 408 (700)
T ss_pred hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh--ccCchHHHHH
Confidence 332222211222222211 11 145555444 56778899999999999999988 4478765 56
Q ss_pred HHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccCccccchHHH----------
Q 005474 485 GCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCL---------- 553 (695)
Q Consensus 485 ~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~~~~~~~~~L---------- 553 (695)
..-.+.+.+.|. ++|..+++.+.+++-.+..+-.--+......+ ..++|.++......... ...+.|
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn-~i~eA~~~~skFTr~~~-~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRAN-EIEEAEEVLSKFTREGF-GAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcc-ccHHHHHHHHHhhhccc-chhhhHHHhhhHHHhH
Confidence 666678889999 99999999998877543322212222222224 67889888766644332 222222
Q ss_pred --HHHHHhcCCHHHHHHHHH
Q 005474 554 --IDLCVNLNLLENACKLLE 571 (695)
Q Consensus 554 --~~~~~~~g~~~~A~~~l~ 571 (695)
+.+|.++|++-+|.+=|.
T Consensus 487 E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 487 EDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHh
Confidence 346667777666654443
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=6.4e-11 Score=83.33 Aligned_cols=48 Identities=40% Similarity=0.697 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 005474 269 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316 (695)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 316 (695)
|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||++|+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 444444444444444444444444444444444444444444444443
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=3.8e-07 Score=96.95 Aligned_cols=290 Identities=15% Similarity=0.143 Sum_probs=203.6
Q ss_pred HHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHc--
Q 005474 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMN-- 213 (695)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~-~~~~~-- 213 (695)
.++...+++++|++.++.-... +.............+.+.|+.++|..+|..+++++ |+...|...+. +..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 4566778899999999886654 33445567778889999999999999999999984 56666555544 44222
Q ss_pred ---CChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 005474 214 ---NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289 (695)
Q Consensus 214 ---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 289 (695)
...+...++|+++...- |.......+.-.+.....+ ..+...+..+...|++ .+|+.|-..|......+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 24677788888886642 3333333332222222223 3445566777777754 4566666667655555566
Q ss_pred HHHHHHHHHc----C----------CCCCH--HhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 005474 290 LNVYEEMKAI----G----------VKPNM--ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYGR 352 (695)
Q Consensus 290 ~~~~~~m~~~----g----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~ 352 (695)
.+++..+... + -.|+. .++..+...|...|++++|.+.+++.++.. |+ +..|..-...|-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Confidence 6666665432 1 12333 344666778889999999999999999864 44 6778888899999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCH--------HHHHHHHHHHHHc
Q 005474 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS--------WTFSSMITICSCR 424 (695)
Q Consensus 353 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--------~~~~~li~~~~~~ 424 (695)
.|++.+|.+.++........ |...-+-.+..+.++|++++|.+++....+.+. .|-. ........+|.+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887655 777777788889999999999999998877663 2322 1124556788999
Q ss_pred CCHHHHHHHHHHHHH
Q 005474 425 GKVSEAEAMFNEMLE 439 (695)
Q Consensus 425 g~~~~A~~~~~~m~~ 439 (695)
|++..|++.|....+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999988887766654
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=3.1e-09 Score=100.34 Aligned_cols=222 Identities=15% Similarity=0.106 Sum_probs=122.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005474 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390 (695)
Q Consensus 311 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 390 (695)
|..+|.+.|.+.+|.+.|+.-.+.. |-..||..|-..|.+..+.+.|+.+|.+-.+. .+-|+....-+.+.+...++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 3444455555555555554444332 33444555555555555555555555555443 12233333334555556666
Q ss_pred HHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 005474 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470 (695)
Q Consensus 391 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 470 (695)
.++|.++|+...+.. ..++....++...|.-.++.+-|+++++++.+.|+. +...|+.+.-+|.-.+++|-++.-|+
T Consensus 306 ~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 666666666666554 445555556666666667777777777777776654 55666666666666777777777777
Q ss_pred HhhhCCCCCCHH--HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHH
Q 005474 471 RLPELGITPDDR--FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 539 (695)
Q Consensus 471 ~m~~~g~~pd~~--~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~ 539 (695)
+....--.|+.. +|.-+.....-.|+ .-|.+.|+-....+|++...++.|+-.....| ..++|+.+++
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G-~i~~Arsll~ 453 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSG-DILGARSLLN 453 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcC-chHHHHHHHH
Confidence 666444444332 34444444444555 55666666666666666666665554333333 3444444443
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.2e-07 Score=94.71 Aligned_cols=282 Identities=10% Similarity=0.008 Sum_probs=212.4
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 005474 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345 (695)
Q Consensus 266 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 345 (695)
..-+.........-+...+++.+..++++...+.. ++....+..=|..+...|+..+-..+=..|.+.- +....+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 34566667777778888999999999999988763 3456666666778888888888777777777753 346788988
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcC
Q 005474 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425 (695)
Q Consensus 346 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 425 (695)
+.-.|...|+..+|++.|.+....+.. =...|-.+..+|+-.|..++|+.-+....+.- +-...-+--+.--|.+.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHhc
Confidence 888888889999999999987655322 23568888899999999999999887765431 111112222333478889
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhh--CCCCC----CHHHHHHHHHHHhcCCH-H
Q 005474 426 KVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPE--LGITP----DDRFCGCLLNVMTQTPK-E 497 (695)
Q Consensus 426 ~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p----d~~~~~~ll~~~~~~~~-~ 497 (695)
+++.|.++|.+... +.| |+..++-+.-.....+.+.+|..+|+..+. ..+.+ -..+++-|..+|.+.+. +
T Consensus 395 n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 395 NLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred cHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 99999999998887 445 777888887777788999999999997762 11111 33467778888888888 9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCccccchHHHHH
Q 005474 498 ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLID 555 (695)
Q Consensus 498 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~~~~~L~~ 555 (695)
+|...+++.....|.+..+...+|..+...| .++.|.+.|++. -..|+..+...++.
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~llg-nld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHLLG-NLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhc-ChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 9999999999999999999999998888888 889999988665 55666654444443
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.12 E-value=1.2e-07 Score=100.75 Aligned_cols=290 Identities=16% Similarity=0.170 Sum_probs=197.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHH-HHHHHHHhc-
Q 005474 172 MKVFRKCRDLDKAERLFDDMLDRGVKPDNV-TFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS-SMIDAYGRA- 248 (695)
Q Consensus 172 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~- 248 (695)
..++...|++++|++.++.-... -+|.. ........+.+.|+.++|..++..+.+++ |+...|. .+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 34478899999999999775544 34554 44556668999999999999999999875 5555544 444444222
Q ss_pred ----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHH
Q 005474 249 ----GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF-DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323 (695)
Q Consensus 249 ----g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 323 (695)
.+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|++ .+|+.|-..|....+..-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 25677788888887653 3333332222222222233 2445566677777764 356666666666666666
Q ss_pred HHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005474 324 VKTIYKEMTDN----G----------LSPNWN--TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387 (695)
Q Consensus 324 a~~~~~~m~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 387 (695)
..+++...... + -.|... ++..+...|...|++++|++++++.++.... .+..|..-.+.+-.
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence 66666665432 1 123332 4455677788899999999999988886322 36677778888999
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--H----HH--HHHHHHHHHc
Q 005474 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL--F----VL--TSLIQCYGKA 459 (695)
Q Consensus 388 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~----~~--~~li~~~~~~ 459 (695)
.|++.+|.+.++..+... .-|...-+-.+..+.+.|++++|.+++....+.+..|-. . .| .-...+|.+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD--LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred CCCHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877 578888888888889999999999999888776543322 1 12 3345688888
Q ss_pred CCHhHHHHHHHHhh
Q 005474 460 QRTDDVVRALNRLP 473 (695)
Q Consensus 460 g~~~~A~~~~~~m~ 473 (695)
|++..|++.|....
T Consensus 319 ~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 319 GDYGLALKRFHAVL 332 (517)
T ss_pred hhHHHHHHHHHHHH
Confidence 99888888777654
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.09 E-value=5.2e-08 Score=102.11 Aligned_cols=26 Identities=27% Similarity=0.003 Sum_probs=23.9
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHH
Q 005474 549 YCNCLIDLCVNLNLLENACKLLELGL 574 (695)
Q Consensus 549 ~~~~L~~~~~~~g~~~~A~~~l~~~~ 574 (695)
+|..|+.+|...|+++.|.++.+.+.
T Consensus 452 ~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 452 TYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 77889999999999999999998876
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=1.5e-08 Score=95.87 Aligned_cols=229 Identities=12% Similarity=0.117 Sum_probs=150.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 005474 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 283 (695)
Q Consensus 204 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 283 (695)
+-+-++|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-++|.+..+.+.|+.+|.+-.+.- +-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 34556777777777777777766553 4566677777777777777777777777766542 33333344556666777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 005474 284 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363 (695)
Q Consensus 284 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 363 (695)
++.++|.++|+...+.. +.++.....+...|.-.++++.|...++++.+.|+. +...|+.+.-+|.-.+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 77777777777776542 225555555666666777777777777777777764 5666666666666777777777777
Q ss_pred HHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005474 364 REMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439 (695)
Q Consensus 364 ~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (695)
.+....--.|+ ...|..+-......|++..|.+.|+-....+ ..+...+|.|.-.-.+.|++++|..+++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 76654433333 2345556666666777777777777666554 45566677666666677777777777766655
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.08 E-value=7.2e-06 Score=84.92 Aligned_cols=402 Identities=10% Similarity=0.124 Sum_probs=247.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 005474 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDR-GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244 (695)
Q Consensus 166 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 244 (695)
..|-..+..+.++|++......|+..+.. -+......|...+.-....+-++-++.++++.++. ++..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 34677777778888888888888776643 22233456777777777788888888888887662 33346667777
Q ss_pred HHhcCCHHHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHHcCCCCC--HHhHHHHHH
Q 005474 245 YGRAGNVEMAFGLYDRARNEK------WRIDPNAFSTLIKLYGTAGNFDG---CLNVYEEMKAIGVKPN--MITYNNLLD 313 (695)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~--~~~~~~li~ 313 (695)
+++.+++++|.+.+....... .+.+...|.-+-+...++-+.-. ...+++.+... -+| ...|+.|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 888888888888887765431 24455566666666665443322 22233333322 223 346777888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC----------------------ChHHHHHHHHHHHHcCC
Q 005474 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR----------------------YGEDTLSVYREMKEKGM 371 (695)
Q Consensus 314 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~A~~~~~~m~~~~~ 371 (695)
.|.+.|+++.|..+|++....- ....-|+.+.++|++-. +++-.+.-|+.+.+.+.
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 8888888888888888766532 22333344444443211 12233333444433311
Q ss_pred -----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 005474 372 -----------QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP------DSWTFSSMITICSCRGKVSEAEAMF 434 (695)
Q Consensus 372 -----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~ 434 (695)
.-++..|..-+. ...|+..+-...+.+..+.- .| -...|..+...|-..|+++.|..+|
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v--dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV--DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc--CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 112333332222 33566777777777766531 22 2346788889999999999999999
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCC----------C-C------HHHHHHHHHHHhcC
Q 005474 435 NEMLEAGFEPN---LFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT----------P-D------DRFCGCLLNVMTQT 494 (695)
Q Consensus 435 ~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-d------~~~~~~ll~~~~~~ 494 (695)
++..+..++-- ..+|..-...=.++.+++.|+++++......-. | . ...|...++.....
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99987544321 345666666667888999999998877532211 1 1 22455555555555
Q ss_pred CH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-c-cC-ccc-cchHHHHHHHHh-c--CCHHHH
Q 005474 495 PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-S-KD-VKK-AYCNCLIDLCVN-L--NLLENA 566 (695)
Q Consensus 495 ~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~-~~-~~~-~~~~~L~~~~~~-~--g~~~~A 566 (695)
|- +....+++.+..+.--.+.++-.++..+-.+. .++++.+.+++- . .+ |.. .+|+..+..+.+ - -+.|+|
T Consensus 491 gtfestk~vYdriidLriaTPqii~NyAmfLEeh~-yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHK-YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhH-HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 66 77777888888776555666655555444444 778888887654 2 12 332 388887765543 2 358899
Q ss_pred HHHHHHHHHcCcccC
Q 005474 567 CKLLELGLTLEVYTD 581 (695)
Q Consensus 567 ~~~l~~~~~~~~~~~ 581 (695)
+.+|+++++ +..|.
T Consensus 570 RdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPE 583 (835)
T ss_pred HHHHHHHHh-cCCHH
Confidence 999999998 44444
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.06 E-value=7.7e-06 Score=84.98 Aligned_cols=452 Identities=12% Similarity=0.052 Sum_probs=284.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005474 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223 (695)
Q Consensus 144 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 223 (695)
++...+.+.+.+.+..+ ....+.....-.+...|+-++|....+.-.+.. .-+.+.|..+--.+....++++|++.|
T Consensus 22 QYkkgLK~~~~iL~k~~--eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFP--EHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHhHHHHHHHHHHhCC--ccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 47778888888777543 334444444445677899999999887776543 346678888877888888999999999
Q ss_pred HhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CC
Q 005474 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VK 302 (695)
Q Consensus 224 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 302 (695)
......+ +-|...+.-+.-.-++.|+++.....-.++.+.. +.....|..+..++.-.|++..|..++++..+.. -.
T Consensus 99 ~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 99 RNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9988753 3367777777777778888888887777777653 4456788889999999999999999999998764 24
Q ss_pred CCHHhHHHHH------HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 005474 303 PNMITYNNLL------DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 376 (695)
Q Consensus 303 p~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 376 (695)
|+...|.... ......|..++|.+.+..-... +......-.+-...+.+.+++++|..++..++.++ ||..
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~ 253 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNL 253 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhH
Confidence 5665554433 3456678888888777665442 22122333445667889999999999999999874 5666
Q ss_pred HHHHHHH-HHHhcCCHHHHH-HHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005474 377 LYNTLLA-MCADVGYTDEAF-EIFEDMKSSENCQPDSWTFSSMITICSCRGKV-SEAEAMFNEMLEAGFEPNLFVLTSLI 453 (695)
Q Consensus 377 ~~~~li~-~~~~~g~~~~A~-~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li 453 (695)
-|+..+. ++.+--+.-++. .+|....+. .|....-..+--......++ +..-+++..+.+.|+++-.. .+.
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~---y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~---dl~ 327 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEK---YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK---DLR 327 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhc---CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh---hhH
Confidence 5555444 443343444444 666665542 12211111111111122222 33445666777777755332 222
Q ss_pred HHHHHcCCH---hH-HHHHHHHhhhCC----------CCCCHH--HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHH
Q 005474 454 QCYGKAQRT---DD-VVRALNRLPELG----------ITPDDR--FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 516 (695)
Q Consensus 454 ~~~~~~g~~---~~-A~~~~~~m~~~g----------~~pd~~--~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~ 516 (695)
..|-.-.+. ++ +..+...+...| -.|... ++..+...+.+.|+ +.|..+++.+...-|.....
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEl 407 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIEL 407 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHH
Confidence 222211111 11 122222221111 134444 45566677788899 99999999999988987766
Q ss_pred HHHHhhhhcchhhHHHHHHHHHHhccc-CccccchH-HHHHHHHhcCCHHHHHHHHHHHHHcCcccCccc---cCcccee
Q 005474 517 VKLLLEEQDIEGDFKKEATELFNSISK-DVKKAYCN-CLIDLCVNLNLLENACKLLELGLTLEVYTDIQS---RSPTQWS 591 (695)
Q Consensus 517 ~~~l~~~~~~~g~~~~eA~~l~~~~~~-~~~~~~~~-~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~---~~~~~w~ 591 (695)
.-+=++.+...| .+++|..+++.... +....+.| --+....+.++.++|.++..+-.+.|. +... .-+.+|-
T Consensus 408 y~~KaRI~kH~G-~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf 484 (700)
T KOG1156|consen 408 YLVKARIFKHAG-LLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWF 484 (700)
T ss_pred HHHHHHHHHhcC-ChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHH
Confidence 655566655567 88999999887743 22222334 456667888999999999888776654 2221 1234454
Q ss_pred eccccCChHHHHHHHHHHHHHHHHH
Q 005474 592 LHLKSLSLGAALTALHIWINDLSKA 616 (695)
Q Consensus 592 ~~l~~~s~G~~~~a~~~w~~~~~~~ 616 (695)
. +..|.+-....-|-..+++.
T Consensus 485 ~----~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 485 Q----LEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred h----HhhhHHHHHHHHHHHHHHHH
Confidence 2 13455555555555555554
No 74
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=1.6e-06 Score=83.24 Aligned_cols=412 Identities=15% Similarity=0.092 Sum_probs=242.4
Q ss_pred HhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 005474 140 NNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219 (695)
Q Consensus 140 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 219 (695)
-.++++++|+..+..+... ..++...+-.+.-.+.-.|.+.+|..+-.... .+.-.-..|+....+.++-++-
T Consensus 68 fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 68 FHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHH
Confidence 3456788888888887764 45666666666655566778888877654322 2333334444555666776666
Q ss_pred HHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-HHHHHcCChHHHHHHHHHHHH
Q 005474 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI-KLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 220 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~ 298 (695)
..+.+.+... ..---+|.......-.+++|+++|.+.... .|+-...|.-+ -+|.+..-++-+.++++-..+
T Consensus 141 ~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 141 LTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 6666655431 122233444444445678888888888765 35555555444 456677777888888877766
Q ss_pred cCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCC
Q 005474 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA-----RYGEDTLSVYREMKEKGMQL 373 (695)
Q Consensus 299 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~ 373 (695)
. ++-++...|.......+.=.-..|..-..++..++-.. | -.+.-.+++ +.-+.|++++--+.+.
T Consensus 214 q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~---- 283 (557)
T KOG3785|consen 214 Q-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH---- 283 (557)
T ss_pred h-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----
Confidence 4 22244555555444444322233333344444332110 1 123333333 2346677776655543
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCC-
Q 005474 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-------KVSEAEAMFNEMLEAGFEPN- 445 (695)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~- 445 (695)
-+..--.|+--|.+.++..+|..+.+++.- ..|-......++ +...| .+.-|.+.|+..-+.+..-|
T Consensus 284 IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P---ttP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDT 358 (557)
T KOG3785|consen 284 IPEARLNLIIYYLNQNDVQEAISLCKDLDP---TTPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDT 358 (557)
T ss_pred ChHhhhhheeeecccccHHHHHHHHhhcCC---CChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhccccccccc
Confidence 112222355567888999999988877642 134333333333 22222 24456666665555544333
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh-HHHHHHhhh
Q 005474 446 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG-YVVKLLLEE 523 (695)
Q Consensus 446 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 523 (695)
+.--.++..++.-..++|+.+.+++.....-..-|...|+ +..+....|. .+++++|-.+...+-.+. .....|+++
T Consensus 359 IpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArC 437 (557)
T KOG3785|consen 359 IPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARC 437 (557)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHH
Confidence 3334566677777778899998888887653343444444 5567777777 888888876654442333 344788888
Q ss_pred hcchhhHHHHHHHHHHhcccCccccch-HHHHHHHHhcCCHHHHHHHHHHHHHcCcccCc
Q 005474 524 QDIEGDFKKEATELFNSISKDVKKAYC-NCLIDLCVNLNLLENACKLLELGLTLEVYTDI 582 (695)
Q Consensus 524 ~~~~g~~~~eA~~l~~~~~~~~~~~~~-~~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 582 (695)
+...+ ..+-|.+++-++..+.+.-+. ......|++.|.+=-|-+.|+......+.|+-
T Consensus 438 yi~nk-kP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 438 YIRNK-KPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN 496 (557)
T ss_pred HHhcC-CchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence 88777 678888888776555444433 44557899999988777778776666555543
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.02 E-value=4e-06 Score=88.76 Aligned_cols=407 Identities=13% Similarity=0.064 Sum_probs=254.4
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCC-CHHHHH
Q 005474 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDP-DALTYS 239 (695)
Q Consensus 161 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~ 239 (695)
+..|...|..+--++...|+++.+.+.|++.... ..-....|+.+-.+|...|.-..|+.+++.-....-.| |...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 5567888998888889999999999999887643 23356778888888889999889999887765433234 444444
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHhhC--C--CCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHcCC-C
Q 005474 240 SMIDAYGR-AGNVEMAFGLYDRARNE--K--WRIDPNAFSTLIKLYGTA-----------GNFDGCLNVYEEMKAIGV-K 302 (695)
Q Consensus 240 ~li~~~~~-~g~~~~A~~~~~~~~~~--g--~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~-~ 302 (695)
..-..|.+ .+.+++++..-.+++.. + -......|..+.-+|... ....++++.+++..+.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44444544 36677777766666551 1 123445555555555432 234577888888876543 3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHHHHHHH
Q 005474 303 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTL 381 (695)
Q Consensus 303 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~l 381 (695)
|++..|-. --|+-.++++.|....++..+.+-..+...|..+.-.+...+++.+|+.+.+...+. |. |......-
T Consensus 478 p~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~ 553 (799)
T KOG4162|consen 478 PLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGK 553 (799)
T ss_pred chHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhh
Confidence 34444433 345667789999999999888766678888888888888899999999998876543 21 11111111
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCC---------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005474 382 LAMCADVGYTDEAFEIFEDMKSSEN---------------------------CQPDSWTFSSMITICSCRGKVSEAEAMF 434 (695)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m~~~~~---------------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~ 434 (695)
+..-...++.++++.....+...-. ..-...++..+.......+ ..+.--.
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~ 631 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSEL 631 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhccccc
Confidence 1222224555555444433322100 0001111211111111000 0000000
Q ss_pred HHHHHCCCC--CC------HHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHH
Q 005474 435 NEMLEAGFE--PN------LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVE 504 (695)
Q Consensus 435 ~~m~~~g~~--p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~-~~a~~~~~ 504 (695)
.|...-+. |+ ...|......+.+.+..++|...+.+... +.| ....|......+...|. ++|.+.|.
T Consensus 632 -~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 632 -KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred -ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 01111111 22 23455667788889999999988888763 344 33345544455555666 99999999
Q ss_pred HHHHcCCChhHHHHHHhhhhcchhh-HHHHHHHHHHhc-ccCccc-cchHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 505 CVEKSNSKLGYVVKLLLEEQDIEGD-FKKEATELFNSI-SKDVKK-AYCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 505 ~~~~~~p~~~~~~~~l~~~~~~~g~-~~~eA~~l~~~~-~~~~~~-~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
....++|++......+|.++.+.|. .+.++..++..+ ..+|.. ..|-.|+.++.+.|+.++|.+-|+-+.+..
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9999999999999999999887763 334444466554 556654 489999999999999999999999887654
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.98 E-value=2e-07 Score=97.74 Aligned_cols=238 Identities=18% Similarity=0.210 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHc-----CC-
Q 005474 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNE-----K-WRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAI-----GV- 301 (695)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~- 301 (695)
..+...|...|...|+++.|+.++++.++. | ..+... ..+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888888888888888888776653 1 012222 2233556777778888888888777542 11
Q ss_pred CCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC-CCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHc---C
Q 005474 302 KPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDN-----GLS-PNW-NTYASLLRAYGRARYGEDTLSVYREMKEK---G 370 (695)
Q Consensus 302 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~ 370 (695)
.|. ..+++.|..+|++.|++++|...++...+. |.. +.+ .-++.+...|+..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 111 345566666777777777777666654321 111 111 12444555666666777776666654321 1
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC----C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 005474 371 MQLS----VTLYNTLLAMCADVGYTDEAFEIFEDMKSSE----N--CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE- 439 (695)
Q Consensus 371 ~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 439 (695)
+.++ ..+++.|...|...|++++|.++++...... . ..-....++.|...|.+.++.++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1111 2355666666666666666666666553311 0 011123445555556666666666666554332
Q ss_pred ---CCC-CC-CHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 440 ---AGF-EP-NLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 440 ---~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
.|. .| ...+|..|...|...|++++|+++.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 221 11 2345556666666666666666665544
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=9.8e-06 Score=83.32 Aligned_cols=398 Identities=14% Similarity=0.116 Sum_probs=210.0
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HH--HHHHcCChhHHH
Q 005474 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTL--IS--CARMNNLPNKAV 220 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l--i~--~~~~~g~~~~A~ 220 (695)
+++|......+.... +.+...+..=+-++.+.++|++|+.+.+.-.. ..+++.. =. +.-+.+..++|+
T Consensus 28 ~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 28 YEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred HHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHHcccHHHHH
Confidence 778888888877653 34455566667778888999999865443221 1222222 23 444678899998
Q ss_pred HHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 221 EWFERMPSFGCDP-DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 221 ~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
..++- +.+ |..+...-...+.+.|++++|..+|+.+.+.+..- |...-..++.+- .+... +.|..
T Consensus 100 k~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~l~~-~~~q~ 166 (652)
T KOG2376|consen 100 KTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AALQV-QLLQS 166 (652)
T ss_pred HHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------HhhhH-HHHHh
Confidence 88873 333 33466666777888999999999999998765221 111122222111 11111 12222
Q ss_pred cCCCCCHHhHHHHHH---HHHhcCChHHHHHHHHHHHHCC-------CCCCH------H-HHHHHHHHHHhCCChHHHHH
Q 005474 299 IGVKPNMITYNNLLD---TMGRAKRPWQVKTIYKEMTDNG-------LSPNW------N-TYASLLRAYGRARYGEDTLS 361 (695)
Q Consensus 299 ~g~~p~~~~~~~li~---~~~~~g~~~~a~~~~~~m~~~~-------~~~~~------~-~~~~li~~~~~~g~~~~A~~ 361 (695)
....| ..+|..+.+ .+...|++.+|+++++...+.+ -.-+. . .-.-|...+-..|+-++|..
T Consensus 167 v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 167 VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 22233 335554443 4567899999999999883211 00011 1 11234456678899999999
Q ss_pred HHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHH-HHHHHHH------------Hh-----------------------
Q 005474 362 VYREMKEKGMQLSVT----LYNTLLAMCADVGYTD-EAFEIFE------------DM----------------------- 401 (695)
Q Consensus 362 ~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~-~A~~~~~------------~m----------------------- 401 (695)
+|..+.+.+.. |.. .-|.|+..-....-++ .++..++ .+
T Consensus 246 iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~ 324 (652)
T KOG2376|consen 246 IYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD 324 (652)
T ss_pred HHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999887654 432 2222322111110000 0000000 00
Q ss_pred ------HhCCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH---
Q 005474 402 ------KSSENCQPDSWTFSSMITICSC--RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN--- 470 (695)
Q Consensus 402 ------~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~--- 470 (695)
.......|. ..+.+++..+.+ ......|.+++...-+....-...+...++......|+++.|++++.
T Consensus 325 q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 325 QVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 000000122 222233332221 12355566666666554322235566667777788888888888888
Q ss_pred -----HhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHH-------cCCChhHHHHHHhhhhcchhhHHHHHHHH
Q 005474 471 -----RLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK-------SNSKLGYVVKLLLEEQDIEGDFKKEATEL 537 (695)
Q Consensus 471 -----~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~eA~~l 537 (695)
...+.+..|..+. .+...+.+.+. +.+..+++.+.. ..+..-++...++..-...| .-++|..+
T Consensus 404 ~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G-~~~ea~s~ 480 (652)
T KOG2376|consen 404 ESWKSSILEAKHLPGTVG--AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG-NEEEASSL 480 (652)
T ss_pred hhhhhhhhhhccChhHHH--HHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC-chHHHHHH
Confidence 5555555565443 33444455544 444444444332 12222223333333333335 66788888
Q ss_pred HHhccc-C-ccccchHHHHHHHHhcCCHHHHHHHH
Q 005474 538 FNSISK-D-VKKAYCNCLIDLCVNLNLLENACKLL 570 (695)
Q Consensus 538 ~~~~~~-~-~~~~~~~~L~~~~~~~g~~~~A~~~l 570 (695)
++++-. . ++..+.-.++.+|++. +.+.|..+-
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 877732 3 3444666677776665 445555443
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3.7e-06 Score=82.48 Aligned_cols=294 Identities=12% Similarity=0.034 Sum_probs=192.9
Q ss_pred cCChhHHHHHHHhchhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChHHHH
Q 005474 213 NNLPNKAVEWFERMPSF-GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP-NAFSTLIKLYGTAGNFDGCL 290 (695)
Q Consensus 213 ~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~ 290 (695)
.++...|...+-.+... -++-|+.....+.+.+...|+.++|...|++....+ |+. .......-.+.+.|+++...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHH
Confidence 34444444444333322 245567777888888888888888888888877542 222 22222233445677777777
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 005474 291 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 370 (695)
Q Consensus 291 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 370 (695)
.+...+.... +-....|-.-.......++++.|+.+-++.++... .+...|-.-...+...|+.++|.-.|+......
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 7777765431 11223333334445566778888887777776432 233444444456677888888888888776543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHHCCCCCC-HH
Q 005474 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TIC-SCRGKVSEAEAMFNEMLEAGFEPN-LF 447 (695)
Q Consensus 371 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li-~~~-~~~g~~~~A~~~~~~m~~~g~~p~-~~ 447 (695)
+.+...|.-|+..|...|++.+|.-.-+...+.- ..+..+...+. ..+ -....-++|.++++...+ +.|+ ..
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~ 439 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTP 439 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHH
Confidence 2367788889999998898888887766554421 33444444331 111 222334778888888776 4564 34
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHH
Q 005474 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV 517 (695)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~ 517 (695)
.-+.+...+...|+.++++.++++... ..||....+.|.+.+...+. .++...|..+..++|++....
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 556777788899999999999998774 47899999999988888887 999999999999999875544
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.93 E-value=1.2e-06 Score=88.12 Aligned_cols=128 Identities=14% Similarity=0.018 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 005474 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315 (695)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 315 (695)
..|..+...|.+.|+.++|...|++..+.. +.+...|+.+...|...|++++|.+.|++..+.... +..+|..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 345555555666666666666666665543 334556666666666666666666666666554211 344555555555
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 005474 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 367 (695)
Q Consensus 316 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 367 (695)
...|++++|.+.|+...+.. |+..........+...++.++|...|.+..
T Consensus 143 ~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 56666666666666655532 222111111112233455666666664433
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.91 E-value=2.4e-06 Score=85.95 Aligned_cols=194 Identities=14% Similarity=0.018 Sum_probs=97.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 005474 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282 (695)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 282 (695)
|..+-..|...|+.++|+..|++..+.. +.+...|+.+...+...|++++|...|++..+.. +-+..+|..+...+..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444445555666666666666555532 2245566666666666666666666666666543 2234555666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 005474 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 362 (695)
.|++++|++.|+...+.. |+..........+...+++++|...|.+..... .++...+ .+. +...|+...+ +.
T Consensus 145 ~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~ 217 (296)
T PRK11189 145 GGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIV--EFYLGKISEE-TL 217 (296)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHH--HHHccCCCHH-HH
Confidence 666666666666666542 322211111222334456666666665543321 1221111 111 2223444333 23
Q ss_pred HHHHHHc---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 005474 363 YREMKEK---GMQ---LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405 (695)
Q Consensus 363 ~~~m~~~---~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 405 (695)
+..+.+. .+. .....|..+...+.+.|++++|+..|++..+.+
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333321 000 022355566666777777777777777766544
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=9.4e-06 Score=84.64 Aligned_cols=154 Identities=15% Similarity=0.087 Sum_probs=72.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHcCChhHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCC
Q 005474 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFST---LISCARMNNLPNKAVEWFERMPSFGCDPD-ALTYSSMIDAYGRAGN 250 (695)
Q Consensus 175 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 250 (695)
+...|++++|.++++...+.. +.|...+.. ........+....+.+.++... ...|+ ......+...+...|+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCC
Confidence 445566666666666655541 122223221 1111111233334444443311 11222 2333344455555666
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH--HhHHHHHHHHHhcCChHHHHHH
Q 005474 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-PNM--ITYNNLLDTMGRAKRPWQVKTI 327 (695)
Q Consensus 251 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~--~~~~~li~~~~~~g~~~~a~~~ 327 (695)
+++|.+.+++..+.. +.+...+..+...|...|++++|...+++....... ++. ..|..+...+...|++++|..+
T Consensus 130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 666666666665543 334445555556666666666666666655543211 111 2233445555555666666666
Q ss_pred HHHHH
Q 005474 328 YKEMT 332 (695)
Q Consensus 328 ~~~m~ 332 (695)
+++..
T Consensus 209 ~~~~~ 213 (355)
T cd05804 209 YDTHI 213 (355)
T ss_pred HHHHh
Confidence 65553
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=1.2e-05 Score=83.91 Aligned_cols=306 Identities=9% Similarity=-0.070 Sum_probs=179.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHH-HHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHH
Q 005474 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGV-KPDNVTFS-TLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMI 242 (695)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 242 (695)
...|..+...+...|+.+.+.+.+....+... ..+..... .....+...|++++|.+++++..+.. +.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 45567777777777888887777766554321 22322222 22235677899999999999887742 234444442 2
Q ss_pred HHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 005474 243 DAYGR----AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318 (695)
Q Consensus 243 ~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 318 (695)
..+.. .+..+.+.+.++... ...+........+...+...|++++|.+.+++..+... .+...+..+...+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHc
Confidence 22222 344555555555421 11122334555666788889999999999999988642 3566778888889999
Q ss_pred CChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCH
Q 005474 319 KRPWQVKTIYKEMTDNGL-SPNW--NTYASLLRAYGRARYGEDTLSVYREMKEKGM-QLSVTLY-N--TLLAMCADVGYT 391 (695)
Q Consensus 319 g~~~~a~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~-~--~li~~~~~~g~~ 391 (695)
|++++|...+++...... .++. ..|..+...+...|++++|..+|++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999998876432 1222 3455677888899999999999998764432 1112111 1 233333444443
Q ss_pred HHHHHH--HHHh-HhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---C-----CHHHHHHHHHHHHHcC
Q 005474 392 DEAFEI--FEDM-KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE---P-----NLFVLTSLIQCYGKAQ 460 (695)
Q Consensus 392 ~~A~~~--~~~m-~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p-----~~~~~~~li~~~~~~g 460 (695)
..+.++ +... ..................++...|+.++|..+++.+...... - .+.......-++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 333332 2111 111000111122234566677788888888888887663211 0 1112222223455778
Q ss_pred CHhHHHHHHHHhhh
Q 005474 461 RTDDVVRALNRLPE 474 (695)
Q Consensus 461 ~~~~A~~~~~~m~~ 474 (695)
++++|+..+.....
T Consensus 322 ~~~~A~~~L~~al~ 335 (355)
T cd05804 322 NYATALELLGPVRD 335 (355)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888877653
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.89 E-value=1.7e-05 Score=84.18 Aligned_cols=393 Identities=14% Similarity=0.073 Sum_probs=251.9
Q ss_pred HHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-H-HHHHcC
Q 005474 137 IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-S-CARMNN 214 (695)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li-~-~~~~~g 214 (695)
+.+...+++..+.+.|+..... .--....|+.+-..|...|.-..|..++++-....-.|+..+--.++ . ++.+.+
T Consensus 331 ~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~ 408 (799)
T KOG4162|consen 331 FALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLK 408 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchh
Confidence 4445556678888888877543 34456779999999999999999999998866543224434333333 3 344567
Q ss_pred ChhHHHHHHHhchhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 005474 215 LPNKAVEWFERMPSF--GC--DPDALTYSSMIDAYGRA-----------GNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 279 (695)
Q Consensus 215 ~~~~A~~~~~~m~~~--g~--~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 279 (695)
..++++++-.+.... +. ......|..+.-+|... ....++++.+++..+.+ +-|+.+.-.+.--
T Consensus 409 ~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq 487 (799)
T KOG4162|consen 409 LVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQ 487 (799)
T ss_pred hhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 778887777666551 11 12344555555555432 12457788888887765 3344444445556
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhCCChHH
Q 005474 280 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGED 358 (695)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~ 358 (695)
|+..++.+.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+..... |. |......-+..-...++.++
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHH
Confidence 7788999999999999998866678999999999999999999999999876543 21 11111111222222445555
Q ss_pred HHHHHHHHHHc---------------------CC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-CCC
Q 005474 359 TLSVYREMKEK---------------------GM-------QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQP 409 (695)
Q Consensus 359 A~~~~~~m~~~---------------------~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p 409 (695)
++.....+... |. .-...++..+..-....+....-..- +..... ..|
T Consensus 566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~ 642 (799)
T KOG4162|consen 566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGP 642 (799)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---cCcccccCCC
Confidence 44443332210 00 00112222222111111100000000 111111 012
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH-
Q 005474 410 D------SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR- 482 (695)
Q Consensus 410 ~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~- 482 (695)
+ ...|......+.+.++.++|...+.+..... .-....|......+...|.+++|...|.... -+.|+.+
T Consensus 643 ~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al--~ldP~hv~ 719 (799)
T KOG4162|consen 643 DSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL--ALDPDHVP 719 (799)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH--hcCCCCcH
Confidence 2 2235566677889999999998888887632 2256677777788889999999999999887 4578655
Q ss_pred HHHHHHHHHhcCCH-HHHHH--HHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc
Q 005474 483 FCGCLLNVMTQTPK-EELGK--LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 541 (695)
Q Consensus 483 ~~~~ll~~~~~~~~-~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~ 541 (695)
...++..++.+.|. .-+.+ ++.++.+.+|.+..++..||...-+.| ..++|.+.|...
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G-d~~~Aaecf~aa 780 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG-DSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-chHHHHHHHHHH
Confidence 67777778888888 55555 999999999999999999999988888 788999988754
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=1e-07 Score=94.37 Aligned_cols=256 Identities=16% Similarity=0.115 Sum_probs=158.7
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHH
Q 005474 245 YGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 324 (695)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 324 (695)
+.-.|++..++.-.+ .....-..+......+.++|...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344577777765555 222111122334455667777777766443 3333322 45555555554444433444444
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 005474 325 KTIYKEMTDNGLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403 (695)
Q Consensus 325 ~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 403 (695)
..-+++........ +.........++...|++++|++++... -+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444333232222 2333333345567789999998887643 2567777788999999999999999999987
Q ss_pred CCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC
Q 005474 404 SENCQPDSWTFSSMITICS----CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479 (695)
Q Consensus 404 ~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 479 (695)
.+ .|. +...+..++. -.+++.+|..+|+++.+. +.++..+.+.+..++...|++++|..++++..+. .|
T Consensus 160 ~~---eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~ 232 (290)
T PF04733_consen 160 ID---EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DP 232 (290)
T ss_dssp CS---CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---C
T ss_pred cC---CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cc
Confidence 43 343 3333444433 234689999999998764 5678899999999999999999999999998754 44
Q ss_pred -CHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCChhHHHH
Q 005474 480 -DDRFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYVVK 518 (695)
Q Consensus 480 -d~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~~p~~~~~~~ 518 (695)
|..+...++.+....|+ +.+.+++.++....|+++.+.+
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 44566667777777777 7788899999999998766543
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.86 E-value=2.3e-06 Score=77.85 Aligned_cols=200 Identities=14% Similarity=0.017 Sum_probs=113.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005474 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389 (695)
Q Consensus 310 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 389 (695)
.|.-.|...|+...|.+-+++.++... .+..++..+...|.+.|..+.|.+.|++....... +..+.|....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 344455566666666666666555431 23445555666666666666666666665554333 3444455555566666
Q ss_pred CHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 005474 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 469 (695)
Q Consensus 390 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 469 (695)
++++|...|++......+.--..+|..+.-+..+.|+.+.|...|++.++... -...+...+.....+.|++-.|..++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHHH
Confidence 66666666666655443333445566666666666777777777766666321 13345555666666667777777776
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCh
Q 005474 470 NRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 513 (695)
Q Consensus 470 ~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~ 513 (695)
+.....+. ++.......|..-...|+ +.+.++=..+.+..|..
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 66655443 565555555555555565 44444444444445543
No 86
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=1.4e-05 Score=76.86 Aligned_cols=396 Identities=12% Similarity=0.095 Sum_probs=233.0
Q ss_pred hHHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005474 145 PDTAALALTYFTNKLKASK-EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 223 (695)
+.-|+.+++.......... ++..| +...+.+.|++++|+..|..+.+. -.++...+..|.-++.-.|.+.+|..+-
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 5556666665543322111 33334 334567899999999999988764 3566777777777777789999998887
Q ss_pred HhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 005474 224 ERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303 (695)
Q Consensus 224 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 303 (695)
.+..+ ++-.-..|....-+.++-++-..+.+.+.+. ..---+|.++....-.+++|++++.+.... .|
T Consensus 115 ~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ 182 (557)
T KOG3785|consen 115 EKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NP 182 (557)
T ss_pred hhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Ch
Confidence 66543 4444455666667778877777777766542 122334455555556789999999999876 35
Q ss_pred CHHhHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005474 304 NMITYNNLLD-TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 382 (695)
Q Consensus 304 ~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 382 (695)
+-...|..+. +|.+..-++-+.+++.-..+. ++.+....|.......+.=.-..|.+-...+.+.+-.- |- .+
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~-f~ 256 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP-FI 256 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch-hH
Confidence 5555665444 456677778888888876654 22334444443333333222223333344444432211 11 23
Q ss_pred HHHHhc-----CCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005474 383 AMCADV-----GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457 (695)
Q Consensus 383 ~~~~~~-----g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 457 (695)
.-++++ .+-+.|++++--+.+. -|. .-..|+--|.+++++.+|..+.+++.- ..|-......++ ++
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~---IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~a 327 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKH---IPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--FA 327 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhh---ChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--HH
Confidence 333443 2456777777655542 232 223455568999999999988776542 122222222222 22
Q ss_pred HcC-------CHhHHHHHHHHhhhCCCCCCHHH-HHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchh
Q 005474 458 KAQ-------RTDDVVRALNRLPELGITPDDRF-CGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 528 (695)
Q Consensus 458 ~~g-------~~~~A~~~~~~m~~~g~~pd~~~-~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 528 (695)
..| ...-|.+.|+-.-+.+..-|..- -.++..++.-... ++..-++..++.---+++.+.-.++.+.+.-|
T Consensus 328 alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atg 407 (557)
T KOG3785|consen 328 ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATG 407 (557)
T ss_pred HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhc
Confidence 333 34556666665545555444332 1122222233334 77888888887766666666555655555556
Q ss_pred hHHHHHHHHHHhcccC--ccccchHH-HHHHHHhcCCHHHHHHHHH
Q 005474 529 DFKKEATELFNSISKD--VKKAYCNC-LIDLCVNLNLLENACKLLE 571 (695)
Q Consensus 529 ~~~~eA~~l~~~~~~~--~~~~~~~~-L~~~~~~~g~~~~A~~~l~ 571 (695)
...||+++|-.+..+ .+..+|-+ |..+|.+.|+.+.|+.++-
T Consensus 408 -ny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 408 -NYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred -ChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 788999998776433 45556655 5567778888888877653
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.79 E-value=4.6e-05 Score=90.15 Aligned_cols=262 Identities=15% Similarity=0.055 Sum_probs=114.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHH
Q 005474 315 MGRAKRPWQVKTIYKEMTDNGLSPNW----NTYASLLRAYGRARYGEDTLSVYREMKEK----GMQ-LSVTLYNTLLAMC 385 (695)
Q Consensus 315 ~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~ 385 (695)
+...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.... |.. .....+..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 34455555555555554432111111 12233444445555666555555554321 100 0112333344455
Q ss_pred HhcCCHHHHHHHHHHhHh----CCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHH
Q 005474 386 ADVGYTDEAFEIFEDMKS----SENC-QP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEA--GFEP--NLFVLTSLIQC 455 (695)
Q Consensus 386 ~~~g~~~~A~~~~~~m~~----~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p--~~~~~~~li~~ 455 (695)
...|++++|...+++... .+.. .+ ....+..+...+...|++++|...+.+.... ...+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 555666655555544322 1100 01 1223333444445556666665555554331 1111 12233334445
Q ss_pred HHHcCCHhHHHHHHHHhhhC----CCCCCHHHH--HHHHHHHhcCCH-HHHHHHHHHHHHcCCChhH----HHHHHhhhh
Q 005474 456 YGKAQRTDDVVRALNRLPEL----GITPDDRFC--GCLLNVMTQTPK-EELGKLVECVEKSNSKLGY----VVKLLLEEQ 524 (695)
Q Consensus 456 ~~~~g~~~~A~~~~~~m~~~----g~~pd~~~~--~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~----~~~~l~~~~ 524 (695)
+...|++++|...+++.... +........ ...+..+...|. +.+.+.+.......+.... ....+++.+
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 55556666665555554321 100000000 001112222333 5555554433321111111 112344444
Q ss_pred cchhhHHHHHHHHHHhccc-------Ccc-ccchHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 525 DIEGDFKKEATELFNSISK-------DVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 525 ~~~g~~~~eA~~l~~~~~~-------~~~-~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
...| ..++|..++++... ... ..+...++.++.+.|+.++|...+.++++..
T Consensus 702 ~~~g-~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLG-QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcC-CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 4445 44556555544311 111 1244567788999999999999999998654
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.79 E-value=8.8e-06 Score=74.15 Aligned_cols=197 Identities=14% Similarity=0.021 Sum_probs=110.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 005474 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317 (695)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 317 (695)
...|.-.|...|+...|.+-+++.++.. +-+..+|..+...|.+.|+.+.|.+.|++....... +....|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3345555666666666666666666554 334456666666666666666666666666554321 44455555555666
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005474 318 AKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 396 (695)
Q Consensus 318 ~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 396 (695)
.|++++|...|++....-.- --..+|..+.-+..+.|+.+.|.+.|++..+.... .....-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 66666666666665543111 12344555555555666666666666666555333 22333345555556666666666
Q ss_pred HHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005474 397 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439 (695)
Q Consensus 397 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (695)
.++.....+ .++....-..|..-...|+.+.+.+.=..+..
T Consensus 195 ~~~~~~~~~--~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRG--GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcc--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666665544 35555555555555556666655555555444
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=0.00046 Score=71.48 Aligned_cols=374 Identities=12% Similarity=0.132 Sum_probs=199.6
Q ss_pred hhCChHHHHHHHHHHHhcCCCCCCHhHHHHH--HHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 005474 141 NMTNPDTAALALTYFTNKLKASKEVILYNVT--MKVF--RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216 (695)
Q Consensus 141 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l--i~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 216 (695)
...++++|+.+.+. .+ -..+++.. =.+| .+.+..++|+..++...+ .|..+...-...+-+.|++
T Consensus 58 q~~ky~~ALk~ikk---~~----~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~y 126 (652)
T KOG2376|consen 58 QLDKYEDALKLIKK---NG----ALLVINSFFFEKAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERY 126 (652)
T ss_pred hhhHHHHHHHHHHh---cc----hhhhcchhhHHHHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhH
Confidence 33457777755442 21 11222322 4455 478999999999873221 2344666666688899999
Q ss_pred hHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH---HHHHHHcCChHHHHHH
Q 005474 217 NKAVEWFERMPSFGCDP-DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL---IKLYGTAGNFDGCLNV 292 (695)
Q Consensus 217 ~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~ 292 (695)
++|+++|+.+.+.+.+- |...-..++.+-. .-.+. +.+.... .| ..+|..+ .-.++..|++.+|+++
T Consensus 127 dealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~---v~-e~syel~yN~Ac~~i~~gky~qA~el 197 (652)
T KOG2376|consen 127 DEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPE---VP-EDSYELLYNTACILIENGKYNQAIEL 197 (652)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccC---CC-cchHHHHHHHHHHHHhcccHHHHHHH
Confidence 99999999997765321 1111111111111 00111 1111111 12 2233322 2344567777777777
Q ss_pred HHHHHHcC-------------CCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhC-
Q 005474 293 YEEMKAIG-------------VKPNMI-TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN----TYASLLRAYGRA- 353 (695)
Q Consensus 293 ~~~m~~~g-------------~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~- 353 (695)
++...+.+ +.-... .-..|...+-..|+-.+|..++...++.... |.. .-|.|+.+-...
T Consensus 198 L~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~ 276 (652)
T KOG2376|consen 198 LEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQN 276 (652)
T ss_pred HHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccc
Confidence 77662211 000011 1122344556677777777777777765432 221 111111110000
Q ss_pred --------------------------------------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 005474 354 --------------------------------------------RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV- 388 (695)
Q Consensus 354 --------------------------------------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~- 388 (695)
+..+.+.++-..+ .+..| ...+.+++..+.+.
T Consensus 277 ~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l--p~~~p-~~~~~~ll~~~t~~~ 353 (652)
T KOG2376|consen 277 YFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL--PGMSP-ESLFPILLQEATKVR 353 (652)
T ss_pred cCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC--CccCc-hHHHHHHHHHHHHHH
Confidence 0111111111100 01122 23334444433322
Q ss_pred -CCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHc
Q 005474 389 -GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN--------EMLEAGFEPNLFVLTSLIQCYGKA 459 (695)
Q Consensus 389 -g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~ 459 (695)
....++.+++....+... .-...+.-.+++.....|+++.|.+++. .+.+.+..|- +-..++..|.+.
T Consensus 354 ~~~~~ka~e~L~~~~~~~p-~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 354 EKKHKKAIELLLQFADGHP-EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKI 430 (652)
T ss_pred HHHHhhhHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhc
Confidence 246777777777766432 2224555667777889999999999999 5555454444 445667778888
Q ss_pred CCHhHHHHHHHHhhhC--CCCCCHHH----HHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHH
Q 005474 460 QRTDDVVRALNRLPEL--GITPDDRF----CGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKK 532 (695)
Q Consensus 460 g~~~~A~~~~~~m~~~--g~~pd~~~----~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 532 (695)
++.+.|..++.+.+.. .-.+.... +.-+...-.+.|. +++..+++++.+.+|++..++.-+.-+|+.. ..+
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~--d~e 508 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL--DPE 508 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc--CHH
Confidence 8888788887766521 11222222 3333333345577 9999999999999999888776555555533 367
Q ss_pred HHHHHHHhccc
Q 005474 533 EATELFNSISK 543 (695)
Q Consensus 533 eA~~l~~~~~~ 543 (695)
.|..+-+.++.
T Consensus 509 ka~~l~k~L~p 519 (652)
T KOG2376|consen 509 KAESLSKKLPP 519 (652)
T ss_pred HHHHHhhcCCC
Confidence 78888776643
No 90
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.73 E-value=5.4e-05 Score=79.45 Aligned_cols=288 Identities=15% Similarity=0.146 Sum_probs=128.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHH
Q 005474 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323 (695)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 323 (695)
+......+.+|+.+++.+.... .-..-|..+..-|...|+++.|.++|.+.- .++-.|.+|.+.|+|..
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 3344455555555555554432 122234445555555555555555554321 23334555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 005474 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403 (695)
Q Consensus 324 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 403 (695)
|.++-.+.. |.......|-+-..-.-++|++.+|.++|-.+.+ |+ ..|.+|-+.|..+..+++.++-..
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 555544332 2222333344444444455555555554433211 12 134455555555555555443321
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHH
Q 005474 404 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483 (695)
Q Consensus 404 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~ 483 (695)
..-..|...+..-|-..|++..|..-|-+..+ |.+-++.|-..+-|++|.++-+.- -| .|..-
T Consensus 879 ----d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakte--gg--~n~~k 941 (1636)
T KOG3616|consen 879 ----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTE--GG--ANAEK 941 (1636)
T ss_pred ----hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhcc--cc--ccHHH
Confidence 11123334444455555666666555543322 344555565666666665554321 11 11111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccCccccchHHHHHHHHhcCCH
Q 005474 484 CGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLL 563 (695)
Q Consensus 484 ~~~ll~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~ 563 (695)
...++-+-+ .|.+.|.+++.+.--+. ..++ ..++.+ -++-|.++-+-.....-..+.--+.-.+-..|++
T Consensus 942 ~v~flwaks-iggdaavkllnk~gll~----~~id----~a~d~~-afd~afdlari~~k~k~~~vhlk~a~~ledegk~ 1011 (1636)
T KOG3616|consen 942 HVAFLWAKS-IGGDAAVKLLNKHGLLE----AAID----FAADNC-AFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKF 1011 (1636)
T ss_pred HHHHHHHHh-hCcHHHHHHHHhhhhHH----HHhh----hhhccc-chhhHHHHHHHhhhccCccchhHHhhhhhhccch
Confidence 111221111 12244444443311000 0001 111112 3344444332221222222444556667778888
Q ss_pred HHHHHHHHHHHHcCccc
Q 005474 564 ENACKLLELGLTLEVYT 580 (695)
Q Consensus 564 ~~A~~~l~~~~~~~~~~ 580 (695)
++|-+-+-++++.+.+.
T Consensus 1012 edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 1012 EDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred hhhhHhhHHHhhccccc
Confidence 88888887777766543
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.72 E-value=6.7e-07 Score=88.63 Aligned_cols=220 Identities=13% Similarity=0.142 Sum_probs=98.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHH
Q 005474 204 STLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGT 282 (695)
Q Consensus 204 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~ 282 (695)
..+.+++...|+.+.++ .++.... .|.......+...+....+-+.+..-+++........ +..........+..
T Consensus 39 ~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~ 114 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFH 114 (290)
T ss_dssp HHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 34445555566554332 3332222 3444444333333332233334444333333222121 11222222233444
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhCCChHH
Q 005474 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY----GRARYGED 358 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~g~~~~ 358 (695)
.|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.+ .|. +...+..++ ...+.+.+
T Consensus 115 ~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 115 EGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp CCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCH
T ss_pred cCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHH
Confidence 56666666555432 234444455556666666666666666665432 222 222233322 22234566
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Q 005474 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV-SEAEAMFNEM 437 (695)
Q Consensus 359 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 437 (695)
|..+|+++.++ ..++..+.+.+..++...|++++|.+++.+....+ +-+..+...+|......|+. +.+.+++.++
T Consensus 186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 66666665443 33455556666666666666666666666655433 33444555555555555554 4455555555
Q ss_pred HH
Q 005474 438 LE 439 (695)
Q Consensus 438 ~~ 439 (695)
..
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.69 E-value=2.9e-05 Score=81.43 Aligned_cols=134 Identities=21% Similarity=0.289 Sum_probs=60.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005474 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394 (695)
Q Consensus 315 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 394 (695)
......|.+|+.+++.+..... -..-|..+.+.|+..|+++.|.++|.+.- .++-.|.+|.+.|+++.|
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 3444455555555554444321 12234444455555555555555554321 122344555555555555
Q ss_pred HHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 005474 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471 (695)
Q Consensus 395 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 471 (695)
.++-.+... . ......|.+-..-+-++|++.+|.++|-.+.+ |+ ..|..|-++|..++.+++.++
T Consensus 811 ~kla~e~~~--~-e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 811 FKLAEECHG--P-EATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHhcC--c-hhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHH
Confidence 555443321 1 22333444444444455555555555433322 32 234555555555555555544
No 93
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.67 E-value=0.00045 Score=70.73 Aligned_cols=182 Identities=16% Similarity=0.119 Sum_probs=125.1
Q ss_pred HHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 005474 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG---KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 467 (695)
Q Consensus 391 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 467 (695)
.+++..+++.....-. .-+..+|..+.+---..- +.+....+++++...-..--..+|-.+++.-.+..-.+.|..
T Consensus 309 t~e~~~~yEr~I~~l~-~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLL-KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHH
Confidence 4566666666654322 334455554443222111 255566677776653222223467788888888888999999
Q ss_pred HHHHhhhCCCCC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccC--
Q 005474 468 ALNRLPELGITP-DDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD-- 544 (695)
Q Consensus 468 ~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~-- 544 (695)
+|.+..+.+..+ +...+.+++.-++....+-|.++|+.-.+.-++.+..+..+...+...+ .-..|+.+|+++...
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lN-dd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLN-DDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-cchhHHHHHHHHHhccC
Confidence 999999888888 6668888888777776699999999988877777765544433333334 336688899877332
Q ss_pred -cc--ccchHHHHHHHHhcCCHHHHHHHHHHHH
Q 005474 545 -VK--KAYCNCLIDLCVNLNLLENACKLLELGL 574 (695)
Q Consensus 545 -~~--~~~~~~L~~~~~~~g~~~~A~~~l~~~~ 574 (695)
++ ..+|+.+++.-..-|+++.+.++-++..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33 3599999999999999999988887764
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=9.3e-05 Score=69.80 Aligned_cols=270 Identities=13% Similarity=0.067 Sum_probs=162.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHhHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCChhHHH
Q 005474 144 NPDTAALALTYFTNKLKASKEVILYNVT-MKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC--ARMNNLPNKAV 220 (695)
Q Consensus 144 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~ 220 (695)
++..|...++.+... .|...-|... ...+-+.+.+.+|+.+...|.+. ++...-..-+.+ .-..+++..+.
T Consensus 59 ~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~r 132 (459)
T KOG4340|consen 59 EFALAAECYEQLGQL---HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSR 132 (459)
T ss_pred HHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchH
Confidence 367788888887764 3554444432 35567889999999999888643 222222222222 23467888899
Q ss_pred HHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 005474 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 300 (695)
Q Consensus 221 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 300 (695)
.+.++....| +..+.+...-...+.|++++|.+-|+...+-+---....||.-+.-| +.|+++.|++...+++++|
T Consensus 133 sLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 133 SLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhh
Confidence 9998887533 55555655556678999999999999988765444566787666544 5689999999999999988
Q ss_pred CCCCHH----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCH
Q 005474 301 VKPNMI----TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSV 375 (695)
Q Consensus 301 ~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~ 375 (695)
++-... .-.-.+++-. .|+. . .|..++ -...+|.-...+.+.|+++.|.+.+.+|.-+ ....|.
T Consensus 209 ~r~HPElgIGm~tegiDvrs-vgNt---~----~lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDP 277 (459)
T KOG4340|consen 209 IRQHPELGIGMTTEGIDVRS-VGNT---L----VLHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDP 277 (459)
T ss_pred hhcCCccCccceeccCchhc-ccch---H----HHHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCc
Confidence 652211 0000111000 0000 0 000000 0122333344556778888888877777422 233455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005474 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437 (695)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 437 (695)
+|...+.-.-. .+++.+..+-+.-+...+ +-...||..++-.||++.-++.|-+++.+-
T Consensus 278 vTLHN~Al~n~-~~~p~~g~~KLqFLL~~n--PfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 278 VTLHNQALMNM-DARPTEGFEKLQFLLQQN--PFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred hhhhHHHHhcc-cCCccccHHHHHHHHhcC--CCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 66554432221 244555555555555444 345567777777888888888777776553
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=7.8e-05 Score=76.22 Aligned_cols=382 Identities=12% Similarity=0.020 Sum_probs=200.0
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHH
Q 005474 142 MTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD-NVTFSTLISCARMNNLPNKAV 220 (695)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~ 220 (695)
-++++.|+..|..+.... ++|-+.|..-..+|...|++++|++=-.+-++. .|+ ...|+-.-.++.-.|++++|+
T Consensus 15 ~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHH
Confidence 345888888888887653 447777888888888888888887755554443 455 456777777788888888888
Q ss_pred HHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHH---HHHHHHHhhCC---CCCCHHHHHHHHHHHHH----------c
Q 005474 221 EWFERMPSFGCDP-DALTYSSMIDAYGRAGNVEMA---FGLYDRARNEK---WRIDPNAFSTLIKLYGT----------A 283 (695)
Q Consensus 221 ~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A---~~~~~~~~~~g---~~~~~~~~~~li~~~~~----------~ 283 (695)
.-|.+=++. .| |...++-+..++.......+. -.++..+...- .......|..++..+-+ .
T Consensus 91 ~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 91 LAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 888776653 34 455666676666111000000 00111111000 00011122222222211 0
Q ss_pred CChHHHHHHHHH-----HHHcC-------CCC------------C----------HHhHHHHHHHHHhcCChHHHHHHHH
Q 005474 284 GNFDGCLNVYEE-----MKAIG-------VKP------------N----------MITYNNLLDTMGRAKRPWQVKTIYK 329 (695)
Q Consensus 284 g~~~~A~~~~~~-----m~~~g-------~~p------------~----------~~~~~~li~~~~~~g~~~~a~~~~~ 329 (695)
.++..+.-.+.. +...| ..| | ..-...+.++..+..+++.|.+.+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 111111111110 00000 011 0 0112345556666677777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHHhH
Q 005474 330 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT-------LLAMCADVGYTDEAFEIFEDMK 402 (695)
Q Consensus 330 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------li~~~~~~g~~~~A~~~~~~m~ 402 (695)
...+.. -+..-++....+|...|.+.++...-+...+.|.. ...-|+. +..+|.+.++++.|+..|.+..
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 776654 34445556666777777777666666655554432 1222222 2235555667777777777765
Q ss_pred hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC-C
Q 005474 403 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL-FVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-D 480 (695)
Q Consensus 403 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d 480 (695)
.... .|+. ..+....+++.+......-. .|.. .-...-...+.+.|++..|+..|.++++.. | |
T Consensus 326 te~R-t~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~D 391 (539)
T KOG0548|consen 326 TEHR-TPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PED 391 (539)
T ss_pred hhhc-CHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--Cch
Confidence 5432 3322 22333334444443333322 2221 111222456677777777777777777653 5 4
Q ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCccc
Q 005474 481 DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKK 547 (695)
Q Consensus 481 ~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~ 547 (695)
...|.--.-+|.+.|. ..+.+-.+...+++|+....+.-=|-++.... .+++|.+.++.. ..+|+.
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk-~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK-EYDKALEAYQEALELDPSN 459 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCchh
Confidence 4556666666667777 77777777777777775543322222222222 566666666544 334443
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.65 E-value=0.00053 Score=66.18 Aligned_cols=319 Identities=10% Similarity=0.044 Sum_probs=175.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHHcCChhHHHHHHHhchhCCCCCCHHHH-H
Q 005474 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS---CARMNNLPNKAVEWFERMPSFGCDPDALTY-S 239 (695)
Q Consensus 164 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~ 239 (695)
++.-.--+.+.+...|++.+|+.-|...++- |...|.++.+ .|...|+-.-|+.-|.+.++ +.||-..- .
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHH
Confidence 4444555777788899999999999888754 5566666654 67788888888888888776 46664322 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 005474 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319 (695)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 319 (695)
.-...+.+.|.+++|..-|+.+++.. |+..+- ..++.+.--.++-.. ....+..+...|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~~----------------l~~ql~s~~~~G 169 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHWV----------------LVQQLKSASGSG 169 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHHH----------------HHHHHHHHhcCC
Confidence 23345678899999999999988764 321110 011111000011111 111122233344
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005474 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 399 (695)
Q Consensus 320 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 399 (695)
+...|+.....+++.. +.|...|..-..+|...|++..|+.-++...+.... +..++.-+-..+...|+.+.++...+
T Consensus 170 D~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred chhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5555555555444432 234444444445555555555554444333332222 22223334444444555555555544
Q ss_pred HhHhCCCCCCCHHHHH-----------HH--HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHh
Q 005474 400 DMKSSENCQPDSWTFS-----------SM--ITICSCRGKVSEAEAMFNEMLEAGFEPNLF---VLTSLIQCYGKAQRTD 463 (695)
Q Consensus 400 ~m~~~~~~~p~~~~~~-----------~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~ 463 (695)
+-.+. .||....- .| +......+++.++.+-.+...+....-... .+..+-.+|...|++.
T Consensus 248 ECLKl---dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 248 ECLKL---DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred HHHcc---CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHH
Confidence 44432 23322110 00 111234556666666666666643221222 3344556677788888
Q ss_pred HHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHH
Q 005474 464 DVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 516 (695)
Q Consensus 464 ~A~~~~~~m~~~g~~pd-~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~ 516 (695)
+|++.-.+.+ .+.|| ..++.--..+|.-... ++|..-|+.+.+.++++..+
T Consensus 325 eAiqqC~evL--~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 325 EAIQQCKEVL--DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHHHH--hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 8888888877 44675 5566666666666666 88888888888888877554
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.63 E-value=0.00011 Score=86.83 Aligned_cols=369 Identities=10% Similarity=-0.060 Sum_probs=183.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHH
Q 005474 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST---LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMID 243 (695)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 243 (695)
.+......+...|++.+|....... +.. ...... ........|++..+..+++.+.......+.........
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a---~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~ 417 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAA---GDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAW 417 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC---CCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHH
Confidence 3455556667777777666544332 111 111111 11234456667766666666532111112222233444
Q ss_pred HHHhcCCHHHHHHHHHHHhhCC--C----CCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HhHHHH
Q 005474 244 AYGRAGNVEMAFGLYDRARNEK--W----RID--PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNL 311 (695)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~g--~----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l 311 (695)
.+...|++++|..++++....- . .+. ......+...+...|++++|...+++..+.-...+. ...+.+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 4456677777777776654320 0 011 112222334455677777777777776543111111 233445
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHH----cCCC--C-CHHHHH
Q 005474 312 LDTMGRAKRPWQVKTIYKEMTDN----GLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKE----KGMQ--L-SVTLYN 379 (695)
Q Consensus 312 i~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~--~-~~~~~~ 379 (695)
...+...|++++|...+.+.... |.. ....++..+...+...|++++|...+++..+ .+.. + ....+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 55666777777777777666531 110 1123444555666777777777777766543 2211 1 223344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHH--HH--H
Q 005474 380 TLLAMCADVGYTDEAFEIFEDMKSSEN-CQP--DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG--FEPNLF--VL--T 450 (695)
Q Consensus 380 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~--~~--~ 450 (695)
.+...+...|++++|...+.+...... ..+ ....+..+...+...|+.++|.+.+.+..... ...... .. .
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 455556666777777777766543210 011 23334445556667777777777776664410 111110 00 1
Q ss_pred HHHHHHHHcCCHhHHHHHHHHhhhCCCCCCH---HHHHHHHHHHhcCCH-HHHHHHHHHHHHcC------CChhHHHHHH
Q 005474 451 SLIQCYGKAQRTDDVVRALNRLPELGITPDD---RFCGCLLNVMTQTPK-EELGKLVECVEKSN------SKLGYVVKLL 520 (695)
Q Consensus 451 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~---~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~------p~~~~~~~~l 520 (695)
..+..+...|+.+.|...+............ ..+..+..++...|+ ++|...++++.... .........+
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 1223445567777777777665432111111 112334445556666 67777666655421 1112233455
Q ss_pred hhhhcchhhHHHHHHHHHHhc
Q 005474 521 LEEQDIEGDFKKEATELFNSI 541 (695)
Q Consensus 521 ~~~~~~~g~~~~eA~~l~~~~ 541 (695)
+..+...| ..++|.+.+.+.
T Consensus 738 a~a~~~~G-~~~~A~~~L~~A 757 (903)
T PRK04841 738 NQLYWQQG-RKSEAQRVLLEA 757 (903)
T ss_pred HHHHHHcC-CHHHHHHHHHHH
Confidence 55555556 556666666544
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.63 E-value=1.6e-05 Score=89.14 Aligned_cols=235 Identities=12% Similarity=0.096 Sum_probs=182.7
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-----CHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005474 258 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-----NMITYNNLLDTMGRAKRPWQVKTIYKEMT 332 (695)
Q Consensus 258 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 332 (695)
|+++.... +-....|-..|......++.++|.+++++.... +.+ -...|.++++.-..-|.-+...++|+++.
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 44444332 445678899999999999999999999998754 211 13567788887777888889999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCC--
Q 005474 333 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD-- 410 (695)
Q Consensus 333 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-- 410 (695)
+.. .....|..|...|.+.+.+++|.++|+.|.++- .-....|...+..+.++.+-+.|.+++.+..+. -|.
T Consensus 1525 qyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~e 1598 (1710)
T KOG1070|consen 1525 QYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQE 1598 (1710)
T ss_pred Hhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhh
Confidence 752 235678899999999999999999999998752 246788999999999999999999999988763 333
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH--HHHHH
Q 005474 411 -SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR--FCGCL 487 (695)
Q Consensus 411 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--~~~~l 487 (695)
.....-.++.-.+.|+.+.+..+|+...... +.-...|+.+|+.-.++|+.+.+..+|++....++.|-.. .|...
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 4445566677788999999999999998753 2367799999999999999999999999999998888543 56666
Q ss_pred HHHHhcCCHHHHHH
Q 005474 488 LNVMTQTPKEELGK 501 (695)
Q Consensus 488 l~~~~~~~~~~a~~ 501 (695)
|..-...|+++..+
T Consensus 1678 LeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVE 1691 (1710)
T ss_pred HHHHHhcCchhhHH
Confidence 65444455533333
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=4e-05 Score=81.50 Aligned_cols=258 Identities=17% Similarity=0.217 Sum_probs=121.3
Q ss_pred CHhHHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhC-C--------CC
Q 005474 164 EVILYNVTMK--VFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSF-G--------CD 232 (695)
Q Consensus 164 ~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~ 232 (695)
|..+-..+++ .|..-|+.+.|.+-.+-+. +...|..+.+.|.+.++++-|.-.+-.|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3444444442 2445566666555544443 2345555555565555555554444444321 0 01
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 005474 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 312 (695)
Q Consensus 233 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 312 (695)
++ .+-.-..-.....|.+++|+.+|.+-.. |..|=+.|...|.+++|+++-+.--+..+ ..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 11 1112222233456777777777777654 33444556667777777776654322211 23444444
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 005474 313 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 392 (695)
Q Consensus 313 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 392 (695)
.-+-..++.+.|++.|++... +-...+. |+. .++.....+.+.+. |...|.--..-+...|+++
T Consensus 866 ~~Lear~Di~~AleyyEK~~~----hafev~r-mL~-----e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGV----HAFEVFR-MLK-----EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCC----hHHHHHH-HHH-----hChHHHHHHHHhcc------chHHHHHHHHHHhcccchH
Confidence 444555666666666654311 0111111 111 11111111222211 2233333344444556666
Q ss_pred HHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 393 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
.|+.+|...++ |-++++..|-+|+.++|-++-++- -|......+.+.|...|++.+|+.+|.+.
T Consensus 930 aAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 930 AALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66666655543 223444455566666665554432 23444445555666666666666665544
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.61 E-value=0.00016 Score=69.60 Aligned_cols=303 Identities=10% Similarity=0.022 Sum_probs=188.2
Q ss_pred HHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHH
Q 005474 206 LISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM---IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF-STLIKLYG 281 (695)
Q Consensus 206 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~~~~ 281 (695)
+-..+...|++..|+.-|...++. |+..|.++ ...|...|+-..|+.-+.+.++. .||-..- .--...+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 444555566666666666655542 22233332 34455566666666666666654 3443221 11224455
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 005474 282 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 361 (695)
Q Consensus 282 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 361 (695)
+.|.++.|..=|+...+.. |+..+ ...++.+.-..++-. .....+..+...|+...|+.
T Consensus 118 K~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred hcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHH
Confidence 6666666666666665542 22111 111111111111111 12234455667899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 005474 362 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 441 (695)
Q Consensus 362 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 441 (695)
....+++..+ -|...|..-..+|...|.+..|+.=++...+.. ..+..++--+-..+...|+.+.++...++-++
T Consensus 177 ~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-- 251 (504)
T KOG0624|consen 177 MITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLK-- 251 (504)
T ss_pred HHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--
Confidence 9999998744 388888888899999999999999888887765 56777777778888999999999999998887
Q ss_pred CCCCHHH----HHHH---------HHHHHHcCCHhHHHHHHHHhhhCCCCCCHHH---HHHHHHHHhcCCH-HHHHHHHH
Q 005474 442 FEPNLFV----LTSL---------IQCYGKAQRTDDVVRALNRLPELGITPDDRF---CGCLLNVMTQTPK-EELGKLVE 504 (695)
Q Consensus 442 ~~p~~~~----~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~---~~~ll~~~~~~~~-~~a~~~~~ 504 (695)
+.||... |..+ +......++|.+++...+...+....-..+. +..+-.++...+. .+|.+...
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 4566542 2211 2234567888888888888776543322333 3333334444455 88999999
Q ss_pred HHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc
Q 005474 505 CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 541 (695)
Q Consensus 505 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~ 541 (695)
++..++|++..++---+++|.-.. .+++|+.-++..
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE-~YD~AI~dye~A 367 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDE-MYDDAIHDYEKA 367 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhH-HHHHHHHHHHHH
Confidence 999999998877754455444333 777787777655
No 101
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=0.0002 Score=76.48 Aligned_cols=225 Identities=15% Similarity=0.157 Sum_probs=141.6
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC--------CCCHHHHHHHHHHHHHc
Q 005474 143 TNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR-GV--------KPDNVTFSTLISCARMN 213 (695)
Q Consensus 143 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~--------~p~~~~~~~li~~~~~~ 213 (695)
++.+.|.+.++.+. +-.+|..|.+.|.+.++++-|.-.+..|... |. .++ .+-.-+.-.....
T Consensus 742 G~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred ccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 45677777666553 4567999999999999999998887777531 21 122 2222223345678
Q ss_pred CChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005474 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 293 (695)
Q Consensus 214 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 293 (695)
|.+++|+.+|.+-++ |..|=+.|-..|.+++|.++-+.-.... =..||.....-+-..++.+.|++.|
T Consensus 814 gMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred hhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHH
Confidence 899999999988776 4455667778899999998876533321 2245655666666678888888888
Q ss_pred HHHH----------HcC---------CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 005474 294 EEMK----------AIG---------VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354 (695)
Q Consensus 294 ~~m~----------~~g---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 354 (695)
++.. ... -..|...|..-...+-..|+.+.|+.+|..... |-.++...|-.|
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQG 952 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeecc
Confidence 7531 110 011233333334444455666666666655443 345666666677
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 005474 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 402 (695)
Q Consensus 355 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 402 (695)
+.++|-++-++-. |......|.+.|...|++.+|..+|.+..
T Consensus 953 k~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 953 KTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred CchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7777766654422 44555557777777777777777776654
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=1.1e-07 Score=59.94 Aligned_cols=32 Identities=31% Similarity=0.618 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 441 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 441 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
|+.||..+|++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=0.00012 Score=74.96 Aligned_cols=382 Identities=15% Similarity=0.090 Sum_probs=239.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCH
Q 005474 173 KVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPD-ALTYSSMIDAYGRAGNV 251 (695)
Q Consensus 173 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~ 251 (695)
.+....|+++.|+.+|.+.+... ++|.+.|..-..+|...|++++|++=-.+-++ +.|+ ...|+-+..++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 45677899999999999988764 44778888999999999999999876666555 4566 56788999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH------HHHHc---CCCCCHHhHHHHHHHHH------
Q 005474 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE------EMKAI---GVKPNMITYNNLLDTMG------ 316 (695)
Q Consensus 252 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~m~~~---g~~p~~~~~~~li~~~~------ 316 (695)
++|+..|.+-++.. +-+...++.+..++.... ++.+.|. ..... ........|..++..+-
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999988775 556778888888882211 1111111 11100 00001122333332221
Q ss_pred ----hcCChHHHHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHHhCCChHH
Q 005474 317 ----RAKRPWQVKTIYKEM-----TDNG-------LSP------------N----------WNTYASLLRAYGRARYGED 358 (695)
Q Consensus 317 ----~~g~~~~a~~~~~~m-----~~~~-------~~~------------~----------~~~~~~li~~~~~~g~~~~ 358 (695)
...++..+.-.+... ...+ ..| | ..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 101111111111100 0001 111 0 1123446667777788888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHH-------HHHHHHcCCHHHHH
Q 005474 359 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM-------ITICSCRGKVSEAE 431 (695)
Q Consensus 359 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l-------i~~~~~~g~~~~A~ 431 (695)
|.+-+....+.. -+..-++....+|...|.+.+....-....+.|. -...-|+.+ ..+|.+.++++.|.
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 888888887765 3555666777788888888888777777666552 233333333 33566677788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 005474 432 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTPK-EELGKLVECVEKS 509 (695)
Q Consensus 432 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~~~~~~~-~~a~~~~~~~~~~ 509 (695)
..|++.....-.|+. ..+....+++++..+... -+.|+.. -...-.+.+.+.|+ .+|.+.+.++++.
T Consensus 319 ~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a--~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKA--YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHH--hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 888887664333332 223344555555555443 2344332 22222556667777 9999999999999
Q ss_pred CCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCcccc-chHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 510 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKA-YCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 510 ~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~-~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
+|+++..+...+.++.+.| .+.+|..-.+.. ...|+.. .|--=+-++....+++.|.+.|++++++.
T Consensus 388 ~P~Da~lYsNRAac~~kL~-~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLG-EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred CCchhHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999988888888877 556665544332 3344322 44444567777788999999999998765
No 104
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=2.1e-07 Score=58.70 Aligned_cols=29 Identities=48% Similarity=0.991 Sum_probs=11.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005474 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDR 260 (695)
Q Consensus 232 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (695)
.||..||++||++|++.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333333333333333333333333333
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.47 E-value=0.00011 Score=82.85 Aligned_cols=230 Identities=11% Similarity=0.127 Sum_probs=178.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-C---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 005474 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEK-W---RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309 (695)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 309 (695)
+...|-..|......+++++|.++.++++..= + .--...|.++++.-...|.-+...++|++..+.. -.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 46678888888999999999999999987531 1 1123578888888888888889999999998752 1245688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhc
Q 005474 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LSVTLYNTLLAMCADV 388 (695)
Q Consensus 310 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~ 388 (695)
.|...|.+.+++++|.++++.|.+. +.-....|...+..+.++.+-+.|..++.+..+.-.+ -......-.++.-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8999999999999999999999875 2246778999999999999999999999987764222 1344555566777889
Q ss_pred CCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHhHHH
Q 005474 389 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVV 466 (695)
Q Consensus 389 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~ 466 (695)
|+.+.+..+|+...... +.....|+..|++-.++|+.+.++.+|++.+..++.|- ...|...+..--++|+-+.+.
T Consensus 1614 GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 99999999999998765 56788999999999999999999999999999887763 245555555444556654444
Q ss_pred HH
Q 005474 467 RA 468 (695)
Q Consensus 467 ~~ 468 (695)
.+
T Consensus 1692 ~V 1693 (1710)
T KOG1070|consen 1692 YV 1693 (1710)
T ss_pred HH
Confidence 33
No 106
>smart00463 SMR Small MutS-related domain.
Probab=98.47 E-value=9.3e-07 Score=69.09 Aligned_cols=77 Identities=31% Similarity=0.539 Sum_probs=65.5
Q ss_pred ceeeccccCChHHHHHHHHHHHHHHHHHHhcCCCCCCeeEEEeecccccccc-hhHHHHHHHHhhhcCCCCccCCCCcce
Q 005474 589 QWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSD-KGLASVFESHLKELNAPFHDSPDKVGW 667 (695)
Q Consensus 589 ~w~~~l~~~s~G~~~~a~~~w~~~~~~~~~~g~~~p~~~~i~~g~~~~~~~~-~~~~~~i~~~l~~~~~pf~~~~~~~g~ 667 (695)
.|.+|||+|+.++|..++..|+...++. | .+..+.|+||.|.|+... +.++..+..+|...+.+|.+. .|.|+
T Consensus 1 ~~~lDLHG~~~~eA~~~l~~~l~~~~~~---~--~~~~~~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~~-~~~G~ 74 (80)
T smart00463 1 KWSLDLHGLTVEEALTALDKFLNNARLK---G--LEQKLVIITGKGKHSLGGKSGVKPALKEHLRVESFRFAEE-GNSGV 74 (80)
T ss_pred CCeEEcCCCCHHHHHHHHHHHHHHHHHc---C--CCceEEEEEcccCCCccchhhHHHHHHhchhhcccccCCC-CCCeE
Confidence 3788999999999999999999998874 2 226789999999999743 678999999999888888775 89999
Q ss_pred EEEe
Q 005474 668 FLTT 671 (695)
Q Consensus 668 ~~~~ 671 (695)
++..
T Consensus 75 ~~v~ 78 (80)
T smart00463 75 LVVK 78 (80)
T ss_pred EEEE
Confidence 9874
No 107
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.00017 Score=67.31 Aligned_cols=254 Identities=14% Similarity=0.128 Sum_probs=153.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHH-H
Q 005474 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-V 324 (695)
Q Consensus 246 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a 324 (695)
.-.|++..++..-+...... -+...-.-+-++|...|.+..... +++... .|.......+......-++.+. .
T Consensus 19 fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHH
Confidence 33466666665554443321 233333334455555555433222 222211 2233333333333333333333 2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 005474 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404 (695)
Q Consensus 325 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 404 (695)
.++.+.+.......+......-...|++.|++++|++....... ......+ +..+.+..+++-|...+++|.+.
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----LEAAALN--VQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc
Confidence 33444444443343434444445567888889988887766221 1233333 45566778889999999999873
Q ss_pred CCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCC
Q 005474 405 ENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480 (695)
Q Consensus 405 ~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 480 (695)
.+..|.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..++++..+.... +
T Consensus 167 ----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-d 240 (299)
T KOG3081|consen 167 ----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-D 240 (299)
T ss_pred ----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-C
Confidence 456677766666654 46688999999999773 5688889999999999999999999999998865322 4
Q ss_pred HHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCChhHHH
Q 005474 481 DRFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYVV 517 (695)
Q Consensus 481 ~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~~p~~~~~~ 517 (695)
..+..-++-+-.+.|. +-..+.+.+.....|+++.+.
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 5555555555555565 566778888888888876553
No 108
>PLN02789 farnesyltranstransferase
Probab=98.43 E-value=0.00023 Score=71.69 Aligned_cols=205 Identities=12% Similarity=0.074 Sum_probs=91.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC-ChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC--
Q 005474 175 FRKCRDLDKAERLFDDMLDRGVKPD-NVTFSTLISCARMNN-LPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN-- 250 (695)
Q Consensus 175 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-- 250 (695)
+...++.++|+.+++++++. .|+ ..+|+..-.++...| +++++++.++++.+.. +.+..+|+.....+.+.|+
T Consensus 47 l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 33344555555555555543 222 223333333333344 3455555555555432 1233344433333333343
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CCh----HH
Q 005474 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA---KRP----WQ 323 (695)
Q Consensus 251 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~----~~ 323 (695)
.++++.+++++++.. +-+..+|+....++.+.|+++++++.++++++.++. |...|+.....+.+. |.. ++
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 244555555555443 345555665555555666666666666666655433 344444443333322 111 23
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhC----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005474 324 VKTIYKEMTDNGLSPNWNTYASLLRAYGRA----RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386 (695)
Q Consensus 324 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 386 (695)
......+++... +-|...|+.+...+... +...+|.+++.+..+.++. +......|++.|+
T Consensus 202 el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~ 266 (320)
T PLN02789 202 ELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHH
Confidence 333443444332 12444455444444442 2233455555554443222 3444444555554
No 109
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.42 E-value=0.0056 Score=66.82 Aligned_cols=60 Identities=18% Similarity=0.100 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCH----HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhccc
Q 005474 483 FCGCLLNVMTQTPK----EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 543 (695)
Q Consensus 483 ~~~~ll~~~~~~~~----~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~ 543 (695)
+-+.|++.|.+.++ -+|.-+++.....+|.+..+--.|.+.|.-.| -...|.++++.+..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lG-a~p~a~~~y~tLdI 501 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLG-AFPDAYELYKTLDI 501 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhc-CChhHHHHHHhcch
Confidence 34466777778776 56777788888889988877766666666556 66788888877643
No 110
>PLN02789 farnesyltranstransferase
Probab=98.42 E-value=0.00024 Score=71.52 Aligned_cols=203 Identities=8% Similarity=0.051 Sum_probs=135.4
Q ss_pred cCChhHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh--HH
Q 005474 213 NNLPNKAVEWFERMPSFGCDP-DALTYSSMIDAYGRAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF--DG 288 (695)
Q Consensus 213 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--~~ 288 (695)
.++.++|+.+.+++++. .| +..+|+..-..+...| ++++++..++++.+.. +-+..+|+.....+.+.|+. ++
T Consensus 50 ~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 50 DERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 56778888888888874 34 4456666666666667 5789999999988765 45666777666666666653 67
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC---CCh----HHHHH
Q 005474 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA---RYG----EDTLS 361 (695)
Q Consensus 289 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~----~~A~~ 361 (695)
++.+++++.+...+ |..+|+....++...|+++++++.++++++.+.. |...|+.....+.+. |.. ++..+
T Consensus 127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 78888888876543 7778888888888888899999999998887644 555666555444433 222 35566
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHH
Q 005474 362 VYREMKEKGMQLSVTLYNTLLAMCADV----GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423 (695)
Q Consensus 362 ~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 423 (695)
...+++...+. |...|+-+...+... ++..+|.+.+.+..+.+ ..+......|++.|+.
T Consensus 205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~--~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD--SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc--CCcHHHHHHHHHHHHh
Confidence 66566555433 556666666666552 33455777776665543 3556666667776664
No 111
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.0029 Score=69.44 Aligned_cols=215 Identities=14% Similarity=0.174 Sum_probs=104.3
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHH
Q 005474 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRG--VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS 239 (695)
Q Consensus 162 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 239 (695)
..|+.--...++++...+-+.+-+++++++.-.+ +.-+...-|.||-...+. +..+..+..+++.... .|+
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~----- 1053 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD----- 1053 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh-----
Confidence 3455556677788888888888888888776321 111222223333333332 3334444454444321 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC---------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 240 SMIDAYGRAGNVEMAFGLYDRARNEK---------------------WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~~~~~g---------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
+...+...+-+++|..+|++....+ ---.+.+|..+..+-.+.|...+|++-|-+.
T Consensus 1054 -ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1054 -IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred -HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 1222233334444444444321100 0012345555666666666665555544322
Q ss_pred cCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 005474 299 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 378 (695)
Q Consensus 299 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 378 (695)
-|...|.-+++...+.|.+++-.+.+....+..-.|... +.||-+|++.+++.+.++++ ..|+....
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i 1197 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANI 1197 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhH
Confidence 245556666666666666666666655555544333332 34566666666555443332 12344444
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 005474 379 NTLLAMCADVGYTDEAFEIFE 399 (695)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~ 399 (695)
..+.+-|...|.++.|.-+|.
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHH
Confidence 444555555555555544443
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=5.8e-05 Score=77.80 Aligned_cols=245 Identities=12% Similarity=0.089 Sum_probs=160.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHH
Q 005474 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 323 (695)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 323 (695)
-+.+.|++.+|.-.|+..++.. +-+..+|.-|......+++-..|+..+++..+.... |....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3456777888888888777664 446677888888888888888888888887775322 56666667777777777777
Q ss_pred HHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhCCChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005474 324 VKTIYKEMTDNGLS--------PNWNTYASLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLLAMCADVGYTDEA 394 (695)
Q Consensus 324 a~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~A 394 (695)
|.+.++.-+....+ ++...-.. ..+.....+....++|-++ .+.+..+|...+..|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 87777776543211 00000000 1112222334444555544 3445446777777777777788888888
Q ss_pred HHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 395 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
.+.|+...... +-|..+||.|...++...+.++|+.-|++.++ +.|+ +.+..-|.-.|...|.+++|.+.|-..+
T Consensus 450 iDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 88888888755 56778888888888888888888888888887 4564 3344456667888888888888776543
Q ss_pred ---hC------CCCCCHHHHHHHHHHHhcCCH
Q 005474 474 ---EL------GITPDDRFCGCLLNVMTQTPK 496 (695)
Q Consensus 474 ---~~------g~~pd~~~~~~ll~~~~~~~~ 496 (695)
.. +..++...|..|=.+++..+.
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 11 122344566666666666665
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=3.1e-05 Score=81.78 Aligned_cols=222 Identities=13% Similarity=0.070 Sum_probs=173.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 005474 231 CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 310 (695)
Q Consensus 231 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 310 (695)
++|--..-..+...+...|-...|..+|+++. .|.-+|.+|...|+..+|..+..+..++ +||...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34444445567778888899999999998865 4777888999999999999998888774 678888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005474 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390 (695)
Q Consensus 311 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 390 (695)
+.+......-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+.+. ....+|..+-.+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhh
Confidence 888877777788888888765432 111122222347899999999988766532 256778878888889999
Q ss_pred HHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 005474 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470 (695)
Q Consensus 391 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 470 (695)
++.|.+.|..-.... +.+...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|++.++
T Consensus 535 ~q~av~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 999999999888754 5567889999999999999999999999999977 3456677777788889999999999999
Q ss_pred Hhhh
Q 005474 471 RLPE 474 (695)
Q Consensus 471 ~m~~ 474 (695)
++.+
T Consensus 612 rll~ 615 (777)
T KOG1128|consen 612 RLLD 615 (777)
T ss_pred HHHH
Confidence 8874
No 114
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.35 E-value=0.0025 Score=70.11 Aligned_cols=144 Identities=10% Similarity=0.035 Sum_probs=75.2
Q ss_pred HhhHHHHHHHhCCCCCHHHHH----HHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005474 116 EDDVFSVLRCLGDDFLEQDCV----IILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDM 191 (695)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 191 (695)
...+...++....++...-+- .+++...+..+|.+.|+.+... ..-+...+....+.|++..+++.|..+.-..
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 334444555554444433322 2233333466777777777654 2346777888888898888888888773222
Q ss_pred HHcCCCCCHHHHHHHHH--HHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005474 192 LDRGVKPDNVTFSTLIS--CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN 263 (695)
Q Consensus 192 ~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 263 (695)
-+.. +.-...+|-+-. .|...++...|+..|+...+.. +.|...|..+..+|.+.|++..|.++|.+...
T Consensus 553 ~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 553 AQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 1110 001111222111 3344455555555555554421 12455555566666666666666666655543
No 115
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.33 E-value=0.0091 Score=65.24 Aligned_cols=219 Identities=14% Similarity=0.057 Sum_probs=113.8
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 005474 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVF--RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVE 221 (695)
Q Consensus 144 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 221 (695)
+...|+.....+.++. ||.. |..++.++ .+.|+.++|..+++.....+.. |..|..++-.+|...++.++|..
T Consensus 24 qfkkal~~~~kllkk~---Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKH---PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHHC---CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 3677777777777664 3332 33444444 5677777887777776655433 77777777777888888888888
Q ss_pred HHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-Ch---------HHHHH
Q 005474 222 WFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NF---------DGCLN 291 (695)
Q Consensus 222 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~---------~~A~~ 291 (695)
+|+..... -|+......+..+|.|.+++.+-.++--+|-+. ++-+...+=++++.+...- .. .-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 87777653 466666667777777777665443333333221 1233344334444443321 11 12333
Q ss_pred HHHHHHHcC-CCCCHHhHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005474 292 VYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKTIYK-EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369 (695)
Q Consensus 292 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (695)
.++.+.+.+ ---+..-...-...+-..|++++|.+++. ...+.-..-+...-+.-++.+...+++.+..++-.++..+
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 333333332 10011111122233344555566655552 2222222223333344455555555555555555555555
Q ss_pred C
Q 005474 370 G 370 (695)
Q Consensus 370 ~ 370 (695)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 4
No 116
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=3.9e-05 Score=79.03 Aligned_cols=96 Identities=17% Similarity=0.045 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCccc-cchHHHHH
Q 005474 479 PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKK-AYCNCLID 555 (695)
Q Consensus 479 pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~-~~~~~L~~ 555 (695)
+|..+...|.-.|...|. +.+...|+.++..+|++..++|-||-.++- |.+-+||+.-++++ ...|.- .++--|+-
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsAY~rALqLqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISAYNRALQLQPGYVRVRYNLGI 506 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHHHHHHHhcCCCeeeeehhhhh
Confidence 333333444334444444 555555555555555555555555554432 22445555544433 333332 13334555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 005474 556 LCVNLNLLENACKLLELGLT 575 (695)
Q Consensus 556 ~~~~~g~~~~A~~~l~~~~~ 575 (695)
.|...|.+++|.+.|-.++.
T Consensus 507 S~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHH
Confidence 56666666666666655553
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.28 E-value=0.00013 Score=70.89 Aligned_cols=186 Identities=10% Similarity=0.007 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HhH
Q 005474 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP---NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM--ITY 308 (695)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~ 308 (695)
....+..+...+...|++++|...|+++.... +.+. .++..+...|.+.|++++|+..++++.+....... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34455556666666666776666666665542 1111 34555666666667777777777766654221111 123
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 005474 309 NNLLDTMGRA--------KRPWQVKTIYKEMTDNGLSPNW-NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379 (695)
Q Consensus 309 ~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 379 (695)
..+..++... |++++|.+.|+.+.+.. |+. ..+..+..... .. .... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~------~~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LR------NRLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HH------HHHH--------HHHH
Confidence 3333333332 55666777777666543 222 11111111000 00 0000 0112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005474 380 TLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440 (695)
Q Consensus 380 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 440 (695)
.+...|.+.|++++|+..++...+...- +.....+..+..++.+.|+.++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455677778888888777777664210 123466777777777888888888777777653
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.27 E-value=0.00018 Score=69.93 Aligned_cols=187 Identities=12% Similarity=-0.002 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--
Q 005474 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW-- 340 (695)
Q Consensus 267 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-- 340 (695)
......+..+...+.+.|++++|...|+++.... |+ ..++..+..++.+.|++++|...++++.+.......
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456677778888888899999999888887653 32 235666777888888888888888888765422111
Q ss_pred HHHHHHHHHHHhC--------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHH
Q 005474 341 NTYASLLRAYGRA--------RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412 (695)
Q Consensus 341 ~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 412 (695)
.++..+..++.+. |+.++|.+.|+.+.+.... +...+..+..... ... ... .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~---------~ 167 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA---------G 167 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH---------H
Confidence 1344444445443 5667777777777665322 2222221111100 000 000 0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhC
Q 005474 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGF-EP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 475 (695)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 475 (695)
....+...|.+.|++++|...+++..+... .| ....+..+..++.+.|++++|..+++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 012445567788888888888888876421 12 3567778888888888888888888877643
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.27 E-value=0.00034 Score=78.48 Aligned_cols=220 Identities=11% Similarity=0.145 Sum_probs=120.9
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCChhHHHHHHHhchhC-C----------
Q 005474 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI-SCARMNNLPNKAVEWFERMPSF-G---------- 230 (695)
Q Consensus 163 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~-g---------- 230 (695)
.+...+..|+..+...+++++|.++.+...+. .|+...+..+. ..+.+.++.+++.-+ .+... .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 35667888888888888888888888866654 44443332222 245555555544433 22111 0
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 005474 231 -------CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303 (695)
Q Consensus 231 -------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 303 (695)
..-+...+..+..+|-+.|+.++|.++|+++++.. +-|+.+.|.+...|... ++++|++++.+....
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---- 178 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---- 178 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----
Confidence 01122345555566666666666666666666655 44566666666666666 666666666655442
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHHHHHHHH
Q 005474 304 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLL 382 (695)
Q Consensus 304 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li 382 (695)
+...+++..+.+++.++.... |+ +++.-..+.+.+... |..--..++-.+-
T Consensus 179 -----------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 179 -----------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred -----------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 344445555555555555432 11 112222222222221 2222234445555
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHH
Q 005474 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422 (695)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 422 (695)
..|-...+++++..+++.+.+.. +.|.....-++..|.
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYK 268 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence 66667777778888888777765 456666666666665
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.24 E-value=0.00095 Score=74.99 Aligned_cols=148 Identities=12% Similarity=0.144 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005474 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386 (695)
Q Consensus 307 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 386 (695)
.+..+..+|-+.|+.+++..+++++.+.. +-|..+.|.+...|... ++++|++++.+.... +.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 44445555555555555555555555544 22444555555555555 555555544443332 33
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHhHH
Q 005474 387 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDV 465 (695)
Q Consensus 387 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A 465 (695)
..+++..+.+++.++.... .. +++.-.++.+.+... |..--+.++..+-..|-..++|+++
T Consensus 181 ~~kq~~~~~e~W~k~~~~~--~~----------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYN--SD----------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred hhhcchHHHHHHHHHHhcC--cc----------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 3445555555555554432 11 222223333333332 3333445566666777788888888
Q ss_pred HHHHHHhhhCCCCC-CHHHHHHHHHHH
Q 005474 466 VRALNRLPELGITP-DDRFCGCLLNVM 491 (695)
Q Consensus 466 ~~~~~~m~~~g~~p-d~~~~~~ll~~~ 491 (695)
+.+|+...+. .| |.....-++.+|
T Consensus 243 i~iLK~iL~~--~~~n~~a~~~l~~~y 267 (906)
T PRK14720 243 IYILKKILEH--DNKNNKAREELIRFY 267 (906)
T ss_pred HHHHHHHHhc--CCcchhhHHHHHHHH
Confidence 8888888754 33 333444444443
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=0.00022 Score=75.54 Aligned_cols=220 Identities=13% Similarity=0.052 Sum_probs=172.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005474 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346 (695)
Q Consensus 267 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 346 (695)
+|-...-..+...+...|-...|+.+|++.. .|.-+|.+|+..|+..+|..+..+..+ -+||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3444444567788889999999999998765 466688899999999999999988877 36889999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCC
Q 005474 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 426 (695)
Q Consensus 347 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 426 (695)
.+......-+++|.++++..-.+ .-..+.......++++++.+.|+.-.+.+ +--..+|-.+-.+..+.++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhh
Confidence 99988888899999999876543 11111222234789999999999887765 4567788888888899999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHH
Q 005474 427 VSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 504 (695)
Q Consensus 427 ~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~ 504 (695)
++.|.+.|..-.. ..| +...||.+-.+|.+.|+-.+|...+++..+.+..+ -..|.-.+......|. ++|.+.+.
T Consensus 535 ~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-CeeeechhhhhhhcccHHHHHHHHH
Confidence 9999999999887 456 56789999999999999999999999999877443 3334434444566677 99999888
Q ss_pred HHHHc
Q 005474 505 CVEKS 509 (695)
Q Consensus 505 ~~~~~ 509 (695)
++..+
T Consensus 612 rll~~ 616 (777)
T KOG1128|consen 612 RLLDL 616 (777)
T ss_pred HHHHh
Confidence 87753
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.23 E-value=0.00031 Score=65.75 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 005474 274 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353 (695)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 353 (695)
..+-..+...|+-+....+........ .-|.......+....+.|++.+|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 334445555555555555555543221 1233344445555666666666666666665432 34666666666666666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005474 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 433 (695)
Q Consensus 354 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 433 (695)
|+++.|..-|.+..+.... +...+|.|.-.|.-.|+++.|..++......+ .-|...-..+.-.....|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 6666666666666554332 34445555555666666666666666665544 34555555565566666666666665
Q ss_pred HHH
Q 005474 434 FNE 436 (695)
Q Consensus 434 ~~~ 436 (695)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 543
No 123
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.011 Score=65.27 Aligned_cols=246 Identities=15% Similarity=0.186 Sum_probs=159.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005474 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256 (695)
Q Consensus 177 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 256 (695)
.++-+++|..+|+..- .+....+.||.- -+..+.|.++-++.. .+.+|..+..+-.+.|.+.+|++
T Consensus 1060 ~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred hhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHH
Confidence 3444555555554431 233333444331 234445544443332 45678888888888898888887
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005474 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336 (695)
Q Consensus 257 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 336 (695)
-|-+. -|+..|..++....+.|.|++-.+++...++..-.|.+. +.||-+|++.++..+.++++ .
T Consensus 1126 Syika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-----~-- 1190 (1666)
T KOG0985|consen 1126 SYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-----A-- 1190 (1666)
T ss_pred HHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-----c--
Confidence 66543 477889999999999999999999888777766555544 46888999999988766654 2
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHH
Q 005474 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416 (695)
Q Consensus 337 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 416 (695)
-||......+.+-|...|.++.|.-+|.. +..|..|...+...|++..|.+--++. .+..||..
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~ 1254 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKE 1254 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHH
Confidence 37777778888888888999888877764 345666777788888888777654433 34556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 417 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 417 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
+-.+|...+.+.-| +|...++-....-..-++.-|-..|.+++.+.+++..
T Consensus 1255 VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1255 VCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 66666555444322 2332223333444555666666666666666666544
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00083 Score=62.86 Aligned_cols=171 Identities=18% Similarity=0.195 Sum_probs=87.9
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005474 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336 (695)
Q Consensus 257 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 336 (695)
+.+.+......-+......-...|++.|++++|++..+... +......=...+.+..+.+.|.+.++.|.+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 33444433333333333333445666667777766665521 2222222233445556666666666666653
Q ss_pred CCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHH
Q 005474 337 SPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 412 (695)
Q Consensus 337 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 412 (695)
.+..|.+-|..+|.+ .+.+.+|.-+|++|-++ ..|+..+.+-...++...|++++|..++++..... ..+..
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpe 242 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPE 242 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHH
Confidence 244555555555433 34566666666666553 44566666666666666666666666666666554 34455
Q ss_pred HHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 005474 413 TFSSMITICSCRGKVSE-AEAMFNEMLE 439 (695)
Q Consensus 413 ~~~~li~~~~~~g~~~~-A~~~~~~m~~ 439 (695)
+...+|..-...|.-.+ ..+.+.++..
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 55544444444444322 2333444443
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.0011 Score=61.65 Aligned_cols=189 Identities=19% Similarity=0.174 Sum_probs=132.8
Q ss_pred CChHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005474 319 KRPWQVKTIYKEMTD---NG-LSPNWN-TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 393 (695)
Q Consensus 319 g~~~~a~~~~~~m~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 393 (695)
.+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++.+..+-.. +..+-..-.--+...|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchhh
Confidence 355666666666543 23 334433 3444555666778888888888888765321 22221111222445788999
Q ss_pred HHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 394 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 394 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
|+++++.+.+.+ +.|..++-.-+...-..|+--+|++-+.+..+. +..|...|.-+...|...|+++.|.-.+++++
T Consensus 105 A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999998876 678888877777777788888888888887774 45699999999999999999999999999998
Q ss_pred hCCCCC-CHHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCh
Q 005474 474 ELGITP-DDRFCGCLLNVMTQTPK----EELGKLVECVEKSNSKL 513 (695)
Q Consensus 474 ~~g~~p-d~~~~~~ll~~~~~~~~----~~a~~~~~~~~~~~p~~ 513 (695)
- +.| +...|..+...+.-.|. +-+.+++.+..+++|.+
T Consensus 182 l--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 182 L--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred H--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 4 356 55566666665544443 77888999999998843
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.19 E-value=0.0004 Score=65.01 Aligned_cols=120 Identities=13% Similarity=0.023 Sum_probs=65.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhCCC--hHHH
Q 005474 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARY--GEDT 359 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~--~~~A 359 (695)
.++.+++...++...+... .|...|..+...|...|++++|...|+...+... .+...+..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 3444555555555444432 2455555555666666666666666665555432 244444444443 244444 3666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 005474 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405 (695)
Q Consensus 360 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 405 (695)
.+++++..+.+.. +...+..+...+.+.|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666655443 44555556666666666666666666665544
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.0023 Score=65.20 Aligned_cols=138 Identities=13% Similarity=0.008 Sum_probs=94.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005474 315 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 394 (695)
Q Consensus 315 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 394 (695)
+...|++++|+..++.+.+.- +.|........+.+.+.++.++|.+.++.+......- ....-.+..+|.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChHHH
Confidence 445677777777777766542 2345555566677777777777777777777653321 44455567777777888888
Q ss_pred HHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhh
Q 005474 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 395 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
+.+++...... +-|...|..|.++|...|+..++..-..++.. ..|++++|+..+....+
T Consensus 394 i~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 394 IRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHHHHHHHH
Confidence 87777777654 56777778888888888887777776666642 45777777777776654
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00063 Score=63.71 Aligned_cols=124 Identities=15% Similarity=0.038 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 005474 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 316 (695)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 316 (695)
..+.++....+.|++..|...+.+..... ++|..+|+.+.-+|.+.|++++|..-|.+..+... -+...++.|...|.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~ 179 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLL 179 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHH
Confidence 33334444444455555555554444332 44444455555555555555555444444444311 12333444444444
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 005474 317 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 363 (695)
Q Consensus 317 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 363 (695)
-.|+.+.|..++......+.. |..+-..+.......|++++|.++.
T Consensus 180 L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 444444444444444443221 3333333444444444444444443
No 129
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.11 E-value=0.00066 Score=63.53 Aligned_cols=117 Identities=14% Similarity=0.172 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC--HHHHH
Q 005474 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC-ADVGY--TDEAF 395 (695)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~ 395 (695)
++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 33344444444443332 224444444445555555555555555544443322 333344344332 33333 24455
Q ss_pred HHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005474 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439 (695)
Q Consensus 396 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (695)
+++++..+.+ +.+...+..+...+.+.|++++|...|+++.+
T Consensus 131 ~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555444433 23444444444444444444444444444444
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.10 E-value=0.0013 Score=73.19 Aligned_cols=213 Identities=15% Similarity=0.093 Sum_probs=148.0
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 005474 237 TYSSMIDAYGRAGNVEMA-FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315 (695)
Q Consensus 237 ~~~~li~~~~~~g~~~~A-~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 315 (695)
....+=.+...-|.-++| .++++++.+ ++..........+++.-....... ...+...+..|....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~i~ 96 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVARAL 96 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHHHHH
Confidence 333334445556766665 345555442 222222223333333333333332 334688888999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005474 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 395 (695)
Q Consensus 316 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 395 (695)
.+.|++++|..+++...+.. +.+......+...+.+.+++++|+..+++....... +....+.+..++.+.|++++|.
T Consensus 97 ~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~ 174 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQAD 174 (694)
T ss_pred HHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHH
Confidence 99999999999999998853 224566677888899999999999999999887654 6677778888999999999999
Q ss_pred HHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 396 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 396 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
.+|+++...+ .-+..++..+..++-+.|+.++|...|++..+. ..+....|+.++. +...-..+++++.
T Consensus 175 ~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~ 243 (694)
T PRK15179 175 ACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV------DLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH------HHHHHHHHHHHcC
Confidence 9999998843 455888999999999999999999999999874 2345555555443 2333445566554
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.09 E-value=0.0018 Score=72.11 Aligned_cols=183 Identities=9% Similarity=0.054 Sum_probs=142.1
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005474 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 344 (695)
Q Consensus 266 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 344 (695)
...+..++-.|.....+.|++++|+.+++...+. .|+ ......+...+.+.+++++|...+++...... -+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHH
Confidence 3567889999999999999999999999999986 454 66777888999999999999999999998753 3566777
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHc
Q 005474 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424 (695)
Q Consensus 345 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 424 (695)
.+..++.+.|++++|..+|+++...+. -+..++..+...+...|+.++|...|+...+.. .+....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~--~~~~~~~~~~~~----- 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI--GDGARKLTRRLV----- 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CcchHHHHHHHH-----
Confidence 888889999999999999999998443 357888889999999999999999999998765 466666665542
Q ss_pred CCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcC
Q 005474 425 GKVSEAEAMFNEMLEA----GFEPNLFVLTSLIQCYGKAQ 460 (695)
Q Consensus 425 g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g 460 (695)
++..-...++++.-. |....+.....+|.-|.+..
T Consensus 231 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 231 -DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred -HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 333344455555332 33334556666676666544
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.09 E-value=0.0002 Score=63.23 Aligned_cols=90 Identities=8% Similarity=-0.102 Sum_probs=44.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005474 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460 (695)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 460 (695)
+...+...|++++|...|+...... +.+...|..+...+.+.|++++|...|++..+.. +.+...+..+..++...|
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 4444455555555555555554433 3344455555555555555555555555555422 114444445555555555
Q ss_pred CHhHHHHHHHHhh
Q 005474 461 RTDDVVRALNRLP 473 (695)
Q Consensus 461 ~~~~A~~~~~~m~ 473 (695)
+.++|+..|+..+
T Consensus 107 ~~~eAi~~~~~Al 119 (144)
T PRK15359 107 EPGLAREAFQTAI 119 (144)
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555544
No 133
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.08 E-value=0.0097 Score=65.68 Aligned_cols=181 Identities=14% Similarity=0.103 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005474 145 PDTAALALTYFTNKLKASKE-VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWF 223 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 223 (695)
...|+..|-...+ ..++ ...|..|...|+...+...|.+.|+...+.. .-|...+......|+...+++.|..+.
T Consensus 474 ~~~al~ali~alr---ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 474 SALALHALIRALR---LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHHHHh---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 3445554444433 3343 5678888888988888888999998877652 235566777888899999999988873
Q ss_pred HhchhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005474 224 ERMPSFG-CDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 302 (695)
Q Consensus 224 ~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 302 (695)
-..-+.. ...-...|....-.|.+.++...|..-|+...... +-|...|..++.+|.+.|++..|+++|.+.... +
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 2222110 00111223334455677888888988888888665 557788999999999999999999999888775 3
Q ss_pred CCHHhHHH--HHHHHHhcCChHHHHHHHHHHHH
Q 005474 303 PNMITYNN--LLDTMGRAKRPWQVKTIYKEMTD 333 (695)
Q Consensus 303 p~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~ 333 (695)
|+. +|.. ....-+..|++.++...+.....
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 432 2222 23345678889988888887654
No 134
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.05 E-value=3.8e-05 Score=79.01 Aligned_cols=121 Identities=14% Similarity=0.134 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005474 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 452 (695)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 452 (695)
+......+++.+....+++++..++.+.+....+ ..-..|..++|+.|.+.|..+++..+++.=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444444444444444455555555444433110 112233345555555555555555555555555555555555555
Q ss_pred HHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC
Q 005474 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 494 (695)
Q Consensus 453 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~ 494 (695)
++.+.+.|++..|.++..+|...+.-.+..|+...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 555555555555555555555444444444444444444433
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.03 E-value=0.00092 Score=68.03 Aligned_cols=137 Identities=16% Similarity=0.093 Sum_probs=93.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCH-HH
Q 005474 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EE 498 (695)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~ll~~~~~~~~-~~ 498 (695)
+...|++++|+..++.++... +-|...+....+.+.+.|+.++|.+.+++++.. .|+ ......+..++.+.|+ .+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 445677777777777776632 225555555666777777777777777777744 555 3344555566777777 77
Q ss_pred HHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccCccccchHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005474 499 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 576 (695)
Q Consensus 499 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~ 576 (695)
+.++++.....+|++...+++|++.|.+.| ...+|. .+....++..|+++.|...+..+.+.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g-~~~~a~---------------~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELG-NRAEAL---------------LARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhC-chHHHH---------------HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 777777777778888888888888777666 333322 25667788888999998888888765
No 136
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.02 E-value=0.00041 Score=61.29 Aligned_cols=89 Identities=9% Similarity=-0.051 Sum_probs=41.6
Q ss_pred HHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChH
Q 005474 208 SCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD 287 (695)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 287 (695)
..+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++..... +.+...+..+..++.+.|+++
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence 34444444444444444444321 1234444444444555555555555555554433 334444444444555555555
Q ss_pred HHHHHHHHHHH
Q 005474 288 GCLNVYEEMKA 298 (695)
Q Consensus 288 ~A~~~~~~m~~ 298 (695)
+|+..|+....
T Consensus 110 eAi~~~~~Al~ 120 (144)
T PRK15359 110 LAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHH
Confidence 55555554444
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.93 E-value=0.0004 Score=71.30 Aligned_cols=123 Identities=15% Similarity=0.215 Sum_probs=91.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHH
Q 005474 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422 (695)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 422 (695)
...|+..+...++++.|.++|+++.+.. |+ ....+++.+...++-.+|.+++++..+.. +-+......-...+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 3455666666777888888888887764 33 33446777777777888888888877654 456666676777788
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 423 CRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
+.++.+.|.++.+++.+ ..| +..+|..|..+|.+.|++++|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888887 345 55688888888888899998888888764
No 138
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.92 E-value=0.039 Score=57.11 Aligned_cols=411 Identities=14% Similarity=0.159 Sum_probs=212.5
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHH---
Q 005474 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARM-NNLPNKAV--- 220 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~--- 220 (695)
.+++.+.++.+.... +-....|..-|..-.+.++++..+.+|.+.+.. ..+...|...|.--.+ .++...+.
T Consensus 35 ~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 35 IDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred HHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHHHHHHccCcchHHHHH
Confidence 678889999887763 445667999999999999999999999998876 3467777777763332 34433322
Q ss_pred -HHHHh-chhCCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHhhCCCCCCHHHHH------HHHHHH--
Q 005474 221 -EWFER-MPSFGCDP-DALTYSSMIDA---------YGRAGNVEMAFGLYDRARNEKWRIDPNAFS------TLIKLY-- 280 (695)
Q Consensus 221 -~~~~~-m~~~g~~p-~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~------~li~~~-- 280 (695)
+.|+- |.+.|+.+ +-..|+..+.. |....+++...++|+++...-+.-=...|+ .=|+..
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~ta 190 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITA 190 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH
Confidence 23332 23445443 23344544433 333445777888888887642111111221 111111
Q ss_pred -----HHcCChHHHHHHHHHHHH--cCCCCCHHh---------------HHHHHHHHHhcC------Ch--HHHHHHHHH
Q 005474 281 -----GTAGNFDGCLNVYEEMKA--IGVKPNMIT---------------YNNLLDTMGRAK------RP--WQVKTIYKE 330 (695)
Q Consensus 281 -----~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~li~~~~~~g------~~--~~a~~~~~~ 330 (695)
-+...+..|.++++++.. .|...+..+ |..+|.-=-.++ .. ....-++++
T Consensus 191 rK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ 270 (656)
T KOG1914|consen 191 RKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQ 270 (656)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHH
Confidence 123456677777777643 233222211 333332111111 00 011111222
Q ss_pred H-HHCCCCCCHHHH-HH----HHHHHHhCCC-------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHH
Q 005474 331 M-TDNGLSPNWNTY-AS----LLRAYGRARY-------GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG---YTDEA 394 (695)
Q Consensus 331 m-~~~~~~~~~~~~-~~----li~~~~~~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A 394 (695)
. .-.+..|+.-.. .. .-+.+...|+ -+++..+++...+.-..-+..+|..+.+--...- ..+..
T Consensus 271 ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~ 350 (656)
T KOG1914|consen 271 CLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKV 350 (656)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhh
Confidence 1 112222222110 00 1112222222 4566677776554333334555554443222221 25556
Q ss_pred HHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 395 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 395 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
..+++++.......| ..+|..+|..-.+..-+..|..+|.+..+.+..+ ++.++++++.-||. ++.+-|.++|+--+
T Consensus 351 ~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGL 428 (656)
T KOG1914|consen 351 HEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGL 428 (656)
T ss_pred HHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHH
Confidence 666666655443233 3456777777777777788888888887766666 66777777776653 66677888887644
Q ss_pred -hCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc--CCCh-hHHHHHHhhhhcchhhHHHHHHHHHHhc----c--
Q 005474 474 -ELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS--NSKL-GYVVKLLLEEQDIEGDFKKEATELFNSI----S-- 542 (695)
Q Consensus 474 -~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~--~p~~-~~~~~~l~~~~~~~g~~~~eA~~l~~~~----~-- 542 (695)
..|-. ...-...++-+.+.++ ..+..+|+.++.. .|+- ..+++-+......-| .+.-+.++-++. +
T Consensus 429 kkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG-dL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 429 KKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG-DLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhcchh
Confidence 33322 2333344555566666 6677777777654 3321 234443333333335 556666654433 2
Q ss_pred cCccccchHHHHHHHHhcCCHH
Q 005474 543 KDVKKAYCNCLIDLCVNLNLLE 564 (695)
Q Consensus 543 ~~~~~~~~~~L~~~~~~~g~~~ 564 (695)
.++....-..+++-|.-.+.+.
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hcCCCChHHHHHHHHhhccccc
Confidence 2222223334555555555544
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.91 E-value=0.00047 Score=60.32 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005474 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455 (695)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 455 (695)
.....+...+.+.|++++|.+.++.+...+ +.+...+..+...+.+.|++++|..++++..+.+ +.+...+..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 334445555666666666666666665543 3455666666666666666666666666665532 2245555555666
Q ss_pred HHHcCCHhHHHHHHHHhhhC
Q 005474 456 YGKAQRTDDVVRALNRLPEL 475 (695)
Q Consensus 456 ~~~~g~~~~A~~~~~~m~~~ 475 (695)
|...|++++|+..|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666543
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.89 E-value=1.9e-05 Score=50.44 Aligned_cols=33 Identities=36% Similarity=0.704 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 005474 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD 199 (695)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 199 (695)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777766
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.01 Score=55.34 Aligned_cols=187 Identities=11% Similarity=0.032 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHHHc---C-CCCCHHH-HHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005474 179 RDLDKAERLFDDMLDR---G-VKPDNVT-FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEM 253 (695)
Q Consensus 179 g~~~~A~~l~~~m~~~---g-~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 253 (695)
.+.++..+++.++... | ..++..+ |.-++-+....|+.+.|...++.+... ++-+..+-..-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 3555666666555432 2 3344432 333444555666666666666665543 22222222222222334566777
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005474 254 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333 (695)
Q Consensus 254 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 333 (695)
|+++|+.+++.+ +.|.+++-.-+...-..|+--+|++-+.+..+. +.-|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777776655 455566665555555666666666666666554 334666677777777777777777766666665
Q ss_pred CCCCCCHHHHHHHHHHHHh---CCChHHHHHHHHHHHHc
Q 005474 334 NGLSPNWNTYASLLRAYGR---ARYGEDTLSVYREMKEK 369 (695)
Q Consensus 334 ~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 369 (695)
.. +.+...+..+.+.+.- ..+++.+.++|.+..+.
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 32 1233333333333322 22344555666655554
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.87 E-value=2.2e-05 Score=50.07 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCC
Q 005474 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480 (695)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 480 (695)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666667777777777777776666666665
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.86 E-value=2.5e-05 Score=49.51 Aligned_cols=33 Identities=42% Similarity=0.679 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 005474 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKP 198 (695)
Q Consensus 166 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 198 (695)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777765
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.84 E-value=0.00049 Score=70.71 Aligned_cols=126 Identities=15% Similarity=0.179 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 005474 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYG 246 (695)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 246 (695)
.-..++..+...++++.|+++|+++.+.. |+ ....+++.+...++-.+|++++++..+.. +-|...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455666677788888888888888763 44 33456677777888888888888877542 336666777777788
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 247 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
+.++++.|+++.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888888888888888763 34455888888888888888888888877653
No 145
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.81 E-value=0.0011 Score=58.09 Aligned_cols=96 Identities=11% Similarity=0.116 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHH
Q 005474 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420 (695)
Q Consensus 341 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 420 (695)
.....+...+.+.|++++|.+.|+.+.+.+.. +...+..+...+.+.|++++|..+++...+.+ +.+...+..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 33444555566666677777666666654422 55556666666666677777777776666544 4455666666666
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 005474 421 CSCRGKVSEAEAMFNEMLE 439 (695)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~ 439 (695)
|...|+.++|.+.|++..+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6777777777777776666
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.77 E-value=4.2e-05 Score=48.47 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCC
Q 005474 448 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 479 (695)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 479 (695)
+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
No 147
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.72 E-value=0.062 Score=53.39 Aligned_cols=222 Identities=13% Similarity=-0.005 Sum_probs=133.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHH--HHHHHHH---HcCC
Q 005474 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS--SMITICS---CRGK 426 (695)
Q Consensus 352 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~--~li~~~~---~~g~ 426 (695)
+.|+.+.|..+-+..-+.-.. -...+.+.+...+..|+++.|+++++.-+...++.++..--. .|+.+-. -..+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 445555555555554443222 234455566666666666666666665555444344433221 2222111 1223
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH--HHHHHHH
Q 005474 427 VSEAEAMFNEMLEAGFEPNLFVLT-SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKLV 503 (695)
Q Consensus 427 ~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~--~~a~~~~ 503 (695)
...|...-.+..+ +.||..--. .-..+|.+.|+..++-.+++.+-+....|+.. . +....+.|+ .+-.+-.
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gdta~dRlkRa 318 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--L--LYVRARSGDTALDRLKRA 318 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCCcHHHHHHHH
Confidence 4555555555554 456654332 33467889999999999999999876666543 2 223456666 4444555
Q ss_pred HHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCccccchHHHHHHHHhc-CCHHHHHHHHHHHHHcCcccC
Q 005474 504 ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLCVNL-NLLENACKLLELGLTLEVYTD 581 (695)
Q Consensus 504 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~~~~~L~~~~~~~-g~~~~A~~~l~~~~~~~~~~~ 581 (695)
+.+..+.|++....-...+...+.| .+..|+.--+.. ...|...+|.-|.++-... |+-.+++..+-++++.--.|.
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~-e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAG-EFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhcc-chHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 6677788888776666665554445 455555444433 4567778998899887666 999999999999986554444
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.67 E-value=0.0021 Score=56.98 Aligned_cols=124 Identities=17% Similarity=0.209 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCChhHHHHHHHhchhCCCCCC--HHHHHHHH
Q 005474 168 YNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVT---FSTLISCARMNNLPNKAVEWFERMPSFGCDPD--ALTYSSMI 242 (695)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li 242 (695)
|..++..+ ..++...+...++.+.... +.+... .-.+...+...|++++|...|+........++ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444444 3556666666666666542 111111 11222355556666666666666555431111 11223344
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005474 243 DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 295 (695)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 295 (695)
..+...|++++|+..++..... ......+..+...|.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555556666666665543322 22333444555555556666666555543
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.65 E-value=0.00055 Score=70.66 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 005474 232 DPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE--KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 309 (695)
Q Consensus 232 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 309 (695)
..+......+++.+....+++.+..++-+.... ....-..|..++|+.|.+.|..++++++++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345555566666666666677777776666654 222233445577777777777777777777777777777777777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 005474 310 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 353 (695)
Q Consensus 310 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 353 (695)
.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777766665555666665555555444
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.60 E-value=0.0038 Score=55.30 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=34.8
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcC
Q 005474 348 RAYGRARYGEDTLSVYREMKEKGMQLSV--TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425 (695)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 425 (695)
..+...|++++|...|+.+......+.. .....|...+...|++++|+..++..... ......+....+.|.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCC
Confidence 3444445555555555544443311111 12222344444455555555555443221 122233334444444444
Q ss_pred CHHHHHHHHH
Q 005474 426 KVSEAEAMFN 435 (695)
Q Consensus 426 ~~~~A~~~~~ 435 (695)
+.++|...|+
T Consensus 133 ~~~~A~~~y~ 142 (145)
T PF09976_consen 133 DYDEARAAYQ 142 (145)
T ss_pred CHHHHHHHHH
Confidence 4444444443
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.60 E-value=0.0093 Score=59.53 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHHcCCHhHHHHHHHHhhhC--CCCCC--HHHH
Q 005474 415 SSMITICSCRGKVSEAEAMFNEMLEAGFE-----PNLF-VLTSLIQCYGKAQRTDDVVRALNRLPEL--GITPD--DRFC 484 (695)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd--~~~~ 484 (695)
..+...+.+.|++++|.++|++....... .+.. .|...+-++...|+...|.+.|++.... ++..+ ..+.
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 34445556666666666666665543221 1111 2222333455566777777777766532 22222 2345
Q ss_pred HHHHHHHhcCCH---HHHHHHHHHHH
Q 005474 485 GCLLNVMTQTPK---EELGKLVECVE 507 (695)
Q Consensus 485 ~~ll~~~~~~~~---~~a~~~~~~~~ 507 (695)
..|+.++..... .++..-|+.+.
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 555555544332 44444444433
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.53 E-value=0.00011 Score=45.33 Aligned_cols=29 Identities=31% Similarity=0.582 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRG 195 (695)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 195 (695)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
No 153
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.48 E-value=0.0027 Score=60.81 Aligned_cols=98 Identities=18% Similarity=0.117 Sum_probs=67.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCH-HHHHHHHHHHhcCCH-H
Q 005474 421 CSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPK-E 497 (695)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~ll~~~~~~~~-~ 497 (695)
..+.+++++|+..|.+.++ +.| |.+.|..=..+|.+.|.++.|++-.+..+. +.|.. ..|..|..++...|+ +
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 4566777778887777777 344 556666667777788888877777777663 35543 367777777777777 7
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHhh
Q 005474 498 ELGKLVECVEKSNSKLGYVVKLLLE 522 (695)
Q Consensus 498 ~a~~~~~~~~~~~p~~~~~~~~l~~ 522 (695)
+|.+.|++.++++|++..+...|..
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHH
Confidence 7777777777777777755554433
No 154
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.47 E-value=0.0029 Score=57.92 Aligned_cols=88 Identities=26% Similarity=0.389 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------------CCHhHHHH
Q 005474 409 PDSWTFSSMITICSC-----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA----------------QRTDDVVR 467 (695)
Q Consensus 409 p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g~~~~A~~ 467 (695)
.|..+|..+|+.|.+ .|.++=....++.|.+.|+..|..+|+.|++.+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 344455555555443 244444455555555556655666666665555331 23467999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhcCCH
Q 005474 468 ALNRLPELGITPDDRFCGCLLNVMTQTPK 496 (695)
Q Consensus 468 ~~~~m~~~g~~pd~~~~~~ll~~~~~~~~ 496 (695)
++++|...|+.||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999999988775
No 155
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.47 E-value=0.0022 Score=51.85 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=21.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHh
Q 005474 277 IKLYGTAGNFDGCLNVYEEMKAIGV-KPNMITYNNLLDTMGR 317 (695)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~ 317 (695)
|.-+...+++.....+|+.+++.|+ .|++.+|+.++.+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 3334444555555555555555555 5555555555554443
No 156
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.46 E-value=0.00011 Score=45.22 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhhCC
Q 005474 448 VLTSLIQCYGKAQRTDDVVRALNRLPELG 476 (695)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 476 (695)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555554443
No 157
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.44 E-value=0.0016 Score=59.52 Aligned_cols=105 Identities=15% Similarity=0.252 Sum_probs=65.9
Q ss_pred CCCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHH
Q 005474 162 SKEVILYNVTMKVFRK-----CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236 (695)
Q Consensus 162 ~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 236 (695)
..|-.+|..+++.|.+ .|..+-....++.|.+-|+.-|..+|+.||+++=+ |.+ .|...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------ccccH
Confidence 4567777777777754 36777778888899999999999999999987653 221 11111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 005474 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285 (695)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 285 (695)
+.++..-| -.+.+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 108 -fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 -FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111111 12345566666666666666666666666666655443
No 158
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.43 E-value=0.0021 Score=52.01 Aligned_cols=79 Identities=15% Similarity=0.305 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHcCCCCCHHHHH
Q 005474 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRAR--------YGEDTLSVYREMKEKGMQLSVTLYN 379 (695)
Q Consensus 309 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~ 379 (695)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|++|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666778888888888888877 777888887777766543 2334455566666666666666666
Q ss_pred HHHHHHHh
Q 005474 380 TLLAMCAD 387 (695)
Q Consensus 380 ~li~~~~~ 387 (695)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 66655543
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.053 Score=57.60 Aligned_cols=235 Identities=20% Similarity=0.216 Sum_probs=126.2
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHhchhC-CCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 005474 197 KPDNVTFSTLISCARMNNLPNKAVEWFERMPSF-GCDP--------DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267 (695)
Q Consensus 197 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 267 (695)
.|....|..+.......-.++.|...|-+.... |++. +...-.+=|.+| -|++++|+++|-+|....
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 567777777777666666667777666554331 2210 111111122222 377888888877766432
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 005474 268 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 343 (695)
Q Consensus 268 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 343 (695)
.-|..+.+.|++-...++++. -|-..| ...|+.+.+.+.....|++|.+.|..-...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 235566666776655555432 111111 345666666666666677776666543211
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHH
Q 005474 344 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 423 (695)
Q Consensus 344 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 423 (695)
...+.+|.+..++++-+.+-+.+.+ +....-.+.+++...|.-++|.+.|-+-. .|- +-+..|..
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s-----~pk-----aAv~tCv~ 890 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS-----LPK-----AAVHTCVE 890 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc-----CcH-----HHHHHHHH
Confidence 1244555555555544443333322 44455566777777777777776664432 121 23455666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH--------------HHHHHHHHcCCHhHHHHHHHHhh
Q 005474 424 RGKVSEAEAMFNEMLEAGFEPNLFVLT--------------SLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~p~~~~~~--------------~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
..++.+|.++-++..- |.+.+.. --|..+.+.|+.-+|.+++.+|.
T Consensus 891 LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 6666666666554321 2222211 12455667777777777777775
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.35 E-value=0.0052 Score=52.10 Aligned_cols=98 Identities=11% Similarity=0.050 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 005474 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE--PNLFVLTSLIQ 454 (695)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~ 454 (695)
+..+...+.+.|++++|.+.|..+.+...- ......+..+...+.+.|++++|.+.|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344555566666666666666666543210 001234444555566666666666666666553211 11334555555
Q ss_pred HHHHcCCHhHHHHHHHHhhhC
Q 005474 455 CYGKAQRTDDVVRALNRLPEL 475 (695)
Q Consensus 455 ~~~~~g~~~~A~~~~~~m~~~ 475 (695)
++.+.|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 556666666666666665543
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.34 E-value=0.0041 Score=49.72 Aligned_cols=92 Identities=20% Similarity=0.185 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005474 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458 (695)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 458 (695)
..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.+++..+... .+..++..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence 334555555666666666666665543 23335555556666666666666666666655321 233455566666666
Q ss_pred cCCHhHHHHHHHHhh
Q 005474 459 AQRTDDVVRALNRLP 473 (695)
Q Consensus 459 ~g~~~~A~~~~~~m~ 473 (695)
.|++++|...+++..
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 666666666666554
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.33 E-value=0.0041 Score=49.72 Aligned_cols=87 Identities=20% Similarity=0.277 Sum_probs=33.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh
Q 005474 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 321 (695)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 321 (695)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+....... .+..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhH
Confidence 333334444444444444443322 11223333344444444444444444444433221 1222333333344444444
Q ss_pred HHHHHHHHH
Q 005474 322 WQVKTIYKE 330 (695)
Q Consensus 322 ~~a~~~~~~ 330 (695)
+.|...+..
T Consensus 85 ~~a~~~~~~ 93 (100)
T cd00189 85 EEALEAYEK 93 (100)
T ss_pred HHHHHHHHH
Confidence 444444433
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.31 E-value=0.0061 Score=60.62 Aligned_cols=136 Identities=10% Similarity=0.144 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005474 376 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI-CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 454 (695)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 454 (695)
.+|..+++..-+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|.++|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 3456666666666667777777777765442 233333333333 22245555577777777663 3446666777777
Q ss_pred HHHHcCCHhHHHHHHHHhhhCCCCCCH----HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHH
Q 005474 455 CYGKAQRTDDVVRALNRLPELGITPDD----RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 516 (695)
Q Consensus 455 ~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~ 516 (695)
.+.+.|+.+.|..+|++.+.. .|.. ..|...+.--.+.|+ +.+.++.+++.+.-|+...+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 777777777777777776643 2322 367777766666666 66666666666666654333
No 164
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.29 E-value=0.16 Score=49.15 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHcC
Q 005474 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAF---STLIKLYGTAGNFDGCLNVYEEMKAIG 300 (695)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g 300 (695)
.....+.+.|++++|.+.|+++...- +-+.... -.+..+|.+.+++++|...|++..+..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34445556777777777777777643 1122222 344566677777777777777777653
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.26 E-value=0.1 Score=52.15 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCC----CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HH
Q 005474 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSEN----CQPDSW-TFSSMITICSCRGKVSEAEAMFNEMLEA--GFEPN--LF 447 (695)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~ 447 (695)
.+..+...+.+.|++++|.++|+++..... .+.+.. .|...+-.+...|+...|.+.+++.... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 344556667777888888888877765421 011111 2222333455677888888888877653 23222 34
Q ss_pred HHHHHHHHHHH--cCCHhHHHHHHHHhh
Q 005474 448 VLTSLIQCYGK--AQRTDDVVRALNRLP 473 (695)
Q Consensus 448 ~~~~li~~~~~--~g~~~~A~~~~~~m~ 473 (695)
....||.+|-. ...+++|+.-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 55666666643 345556666666554
No 166
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=97.24 E-value=0.0014 Score=51.57 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=53.8
Q ss_pred eccccCChHHHHHHHHHHHHHHHHHHhcCCCCCCeeEEEeecccccccchhHHHHHHHHhhhcCCCCcc---------CC
Q 005474 592 LHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHD---------SP 662 (695)
Q Consensus 592 ~~l~~~s~G~~~~a~~~w~~~~~~~~~~g~~~p~~~~i~~g~~~~~~~~~~~~~~i~~~l~~~~~pf~~---------~~ 662 (695)
+|||+|+...|..++..++...+.. + -..+.|+||.|.||.... ++..|...|.+ +..+.. ..
T Consensus 1 iDLHG~~~~eA~~~l~~~l~~~~~~---~---~~~~~II~G~G~hS~~g~-Lk~~V~~~L~~-~~~~~~v~~~~~~~~~~ 72 (83)
T PF01713_consen 1 IDLHGLTVEEALRALEEFLDEARQR---G---IRELRIITGKGNHSKGGV-LKRAVRRWLEE-GYQYEEVLAYRDAEPED 72 (83)
T ss_dssp EE-TTS-HHHHHHHHHHHHHHHHHT---T---HSEEEEE--STCTCCTSH-HHHHHHHHHHH-THCCTTEEEEEE--CCC
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHc---C---CCEEEEEeccCCCCCCCc-HHHHHHHHHHh-hhccchhheeeecCCCC
Confidence 4899999999999999999887764 1 166899999999998754 99999999988 655554 34
Q ss_pred CCcceEEEe
Q 005474 663 DKVGWFLTT 671 (695)
Q Consensus 663 ~~~g~~~~~ 671 (695)
.|.|+++..
T Consensus 73 g~~G~~~V~ 81 (83)
T PF01713_consen 73 GNSGATIVY 81 (83)
T ss_dssp TGGGEEEEE
T ss_pred CCCeEEEEE
Confidence 588988753
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.20 E-value=0.0086 Score=59.56 Aligned_cols=131 Identities=15% Similarity=0.239 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 005474 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244 (695)
Q Consensus 166 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 244 (695)
.+|-.+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 457777777777777777777777776432 1122333322222 22245555577777776653 44566667777777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005474 245 YGRAGNVEMAFGLYDRARNEKWRIDP---NAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299 (695)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 299 (695)
+.+.++.+.|..+|++.... +..+. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777654 22222 36666666666666666666666666553
No 168
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.20 E-value=0.014 Score=49.37 Aligned_cols=9 Identities=11% Similarity=0.660 Sum_probs=3.2
Q ss_pred CChHHHHHH
Q 005474 284 GNFDGCLNV 292 (695)
Q Consensus 284 g~~~~A~~~ 292 (695)
|++++|.+.
T Consensus 16 ~~~~~A~~~ 24 (119)
T TIGR02795 16 GDYADAIQA 24 (119)
T ss_pred CCHHHHHHH
Confidence 333333333
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.19 E-value=0.0089 Score=61.72 Aligned_cols=85 Identities=13% Similarity=0.015 Sum_probs=43.0
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHh
Q 005474 385 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTD 463 (695)
Q Consensus 385 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 463 (695)
+...|++++|++.|+++.+.. +.+...|..+..+|.+.|++++|...++++++.. | +...|..+..+|...|+++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCHH
Confidence 334455555555555555433 3344445555555555555555555555555422 2 3444555555555555555
Q ss_pred HHHHHHHHhh
Q 005474 464 DVVRALNRLP 473 (695)
Q Consensus 464 ~A~~~~~~m~ 473 (695)
+|+..|++.+
T Consensus 88 eA~~~~~~al 97 (356)
T PLN03088 88 TAKAALEKGA 97 (356)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 170
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.14 E-value=0.19 Score=48.78 Aligned_cols=182 Identities=10% Similarity=0.064 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005474 270 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY---NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346 (695)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 346 (695)
...+-.....+.+.|++++|.+.|+++...-... .... -.+..++.+.+++++|...+++..+....-...-+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3333334455667889999999999888753322 2222 34567778888888888888888775433222333333
Q ss_pred HHHHHh--CC---------------Ch---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC
Q 005474 347 LRAYGR--AR---------------YG---EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 406 (695)
Q Consensus 347 i~~~~~--~g---------------~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 406 (695)
+.+.+. .+ +. .+|.+.|++++ .-|=...-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH--
Confidence 333321 10 11 12223333333 2222233334444433333221
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 407 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA--GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 407 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
.-..- -.+...|.+.|.+..|..-++.+++. +..........++.+|.+.|..++|..+...+
T Consensus 174 --la~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 --LAKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred --HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 00011 13445577777777777777777763 22224455666677777777777777766554
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.14 E-value=0.0045 Score=59.31 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=80.2
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCH
Q 005474 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRT 462 (695)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~ 462 (695)
-..+.+++++|+..|.+..+.. +-|.+.|..-..+|++.|.++.|++-.+..+. +.| -..+|..|..+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 3567788999999999988865 56778888888889999999999888888777 445 356888888899999999
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 005474 463 DDVVRALNRLPELGITPDDRFCGCLLN 489 (695)
Q Consensus 463 ~~A~~~~~~m~~~g~~pd~~~~~~ll~ 489 (695)
++|++.|++.+ .+.|+-.+|..=|.
T Consensus 166 ~~A~~aykKaL--eldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 166 EEAIEAYKKAL--ELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHhhh--ccCCCcHHHHHHHH
Confidence 99999998887 45787777766554
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.10 E-value=0.028 Score=51.44 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHH
Q 005474 343 YASLLRAYGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420 (695)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 420 (695)
+..+...|...|++++|...|++..+....+. ...+..+...+.+.|++++|+..+.+..+.. +.+...+..+...
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 34444444555555555555555544322211 2344445555555566666665555555432 2334444444445
Q ss_pred HHHcCCH
Q 005474 421 CSCRGKV 427 (695)
Q Consensus 421 ~~~~g~~ 427 (695)
|...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 5554443
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.09 E-value=0.016 Score=59.85 Aligned_cols=89 Identities=11% Similarity=0.016 Sum_probs=59.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCH
Q 005474 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 427 (695)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 427 (695)
..+...|++++|++.|++.++.... +...|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCH
Confidence 3444566777777777776665433 45566666667777777777777777776654 44566666677777777777
Q ss_pred HHHHHHHHHHHH
Q 005474 428 SEAEAMFNEMLE 439 (695)
Q Consensus 428 ~~A~~~~~~m~~ 439 (695)
++|...|++.++
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 777777777766
No 174
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.03 E-value=0.48 Score=48.24 Aligned_cols=419 Identities=11% Similarity=0.069 Sum_probs=223.1
Q ss_pred HHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhch
Q 005474 148 AALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227 (695)
Q Consensus 148 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 227 (695)
-+++=+.+.. -+-|..+|-.+|..|..++..++..+++++|..- ++--...|...|.+=...+++.....+|.+..
T Consensus 28 ~lrLRerIkd---NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 28 ELRLRERIKD---NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHHHHHhhc---CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 3444444443 2347888999999999999999999999999753 33445678888887777789999999998887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHhh-CCCCC-CHHHHHHHHHHHH---HcCC------hHHHH
Q 005474 228 SFGCDPDALTYSSMIDAYGRAGNVE------MAFGLYDRARN-EKWRI-DPNAFSTLIKLYG---TAGN------FDGCL 290 (695)
Q Consensus 228 ~~g~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~-~g~~~-~~~~~~~li~~~~---~~g~------~~~A~ 290 (695)
...+ +...|...+.-.-+..+.- .-.+.|+-... .++.| ....|+..+..+- ..|. .|...
T Consensus 104 ~k~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 104 KKSL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred hhhc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 7543 4666766666555443211 11223333322 33333 2334555444332 2343 44556
Q ss_pred HHHHHHHHcCCCCCHHhHHH------HHHHHHh-------cCChHHHHHHHHHHHH--CCCC----CCHHHHHHH-----
Q 005474 291 NVYEEMKAIGVKPNMITYNN------LLDTMGR-------AKRPWQVKTIYKEMTD--NGLS----PNWNTYASL----- 346 (695)
Q Consensus 291 ~~~~~m~~~g~~p~~~~~~~------li~~~~~-------~g~~~~a~~~~~~m~~--~~~~----~~~~~~~~l----- 346 (695)
+.+.+|....+.-=...|+- =++-... ..-+-.|...++++.. .|.. .+..+++-+
T Consensus 182 ~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 182 NGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc
Confidence 66667766422111112211 1111100 1123345555655542 2322 122233221
Q ss_pred ------HHHHHhCC------ChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHH-
Q 005474 347 ------LRAYGRAR------YGE-DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW- 412 (695)
Q Consensus 347 ------i~~~~~~g------~~~-~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~- 412 (695)
|+--...| -.. ..--+|++.... +......|----.-+...++-+.|+...+.-... .|...
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~---spsL~~ 337 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM---SPSLTM 337 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC---CCchhe
Confidence 11100000 000 011111111111 0111222222222233456666776665544332 22211
Q ss_pred -----------------HHHHHHHHHHH---cCCHHHHHHH------HHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 005474 413 -----------------TFSSMITICSC---RGKVSEAEAM------FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 466 (695)
Q Consensus 413 -----------------~~~~li~~~~~---~g~~~~A~~~------~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 466 (695)
+|..++..+.+ .++-+.+... ..++.-.....=..+|..+++.-.+..-.+.|.
T Consensus 338 ~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR 417 (660)
T COG5107 338 FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAAR 417 (660)
T ss_pred eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHH
Confidence 11111111111 1111111111 111110001112345677788777888889999
Q ss_pred HHHHHhhhCC-CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc----
Q 005474 467 RALNRLPELG-ITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI---- 541 (695)
Q Consensus 467 ~~~~~m~~~g-~~pd~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~---- 541 (695)
.+|-+..+.| +.++...+++++.-++......|.++|+.-...-|+.+..++-+...+..-+ .-+.|+.+|+..
T Consensus 418 ~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~in-de~naraLFetsv~r~ 496 (660)
T COG5107 418 KLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRIN-DEENARALFETSVERL 496 (660)
T ss_pred HHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhC-cHHHHHHHHHHhHHHH
Confidence 9999999888 5678888999998776665599999999888888887765532222222224 457788898854
Q ss_pred ccCccccchHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 542 SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 542 ~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
...--.++|+.+++.-.+.|+...+..+=+++.+..
T Consensus 497 ~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 497 EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 222235699999999999999988877777665443
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.03 E-value=0.0016 Score=51.50 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=7.9
Q ss_pred HHHHHHcCCHhHHHHHHH
Q 005474 453 IQCYGKAQRTDDVVRALN 470 (695)
Q Consensus 453 i~~~~~~g~~~~A~~~~~ 470 (695)
..+|.+.|++++|+++|+
T Consensus 65 a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHh
Confidence 344444444444444444
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.01 E-value=0.015 Score=53.02 Aligned_cols=62 Identities=13% Similarity=0.039 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 005474 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQL--SVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403 (695)
Q Consensus 342 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 403 (695)
.+..+...+...|++++|...|++.......+ ...++..+...|...|++++|+..++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444555555555555555554432211 123444555555555555555555555554
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.01 E-value=0.039 Score=59.63 Aligned_cols=68 Identities=12% Similarity=-0.095 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh
Q 005474 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG 514 (695)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~ 514 (695)
+...|.++.-.+...|++++|...++++.+. .|+...|..+...+...|+ ++|...++++..++|.++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 3344555544444456666666666665544 2455555555555555555 666666666555555544
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.00 E-value=0.029 Score=51.30 Aligned_cols=96 Identities=14% Similarity=0.173 Sum_probs=68.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHH
Q 005474 164 EVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPD--NVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241 (695)
Q Consensus 164 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 241 (695)
....|..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|+..+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 455677788888889999999999998876532222 3566777778888899999999888887742 2245666677
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 005474 242 IDAYGRAGNVEMAFGLYDR 260 (695)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~ 260 (695)
...+...|+...+..-++.
T Consensus 113 g~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred HHHHHHcCChHhHhhCHHH
Confidence 7777777776555444333
No 179
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.96 E-value=0.051 Score=47.64 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005474 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 456 (695)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 456 (695)
....+..-+...|++++|..+|+.+..-. +-+..-|-.|.-.+-..|++++|...|.......+ .|...+-.+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 33445555667788888888888777654 45666667777777778888888888887777542 3667777777788
Q ss_pred HHcCCHhHHHHHHHHhh
Q 005474 457 GKAQRTDDVVRALNRLP 473 (695)
Q Consensus 457 ~~~g~~~~A~~~~~~m~ 473 (695)
...|+.+.|.+.|+..+
T Consensus 114 L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 114 LACDNVCYAIKALKAVV 130 (157)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 88888888888877765
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.95 E-value=0.26 Score=43.99 Aligned_cols=124 Identities=12% Similarity=0.054 Sum_probs=58.8
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCC---CCCCHHHH
Q 005474 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG---CDPDALTY 238 (695)
Q Consensus 162 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~ 238 (695)
.|++.---.+..++...|+..+|...|++...--+--|....-.+.++....+++..|...++++-+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 344444445555556666666666666555432223344444445555555555555555555554421 1222 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 005474 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 289 (695)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 289 (695)
-.+.+.+...|....|+..|+..... -|+...-......+.+.|+.+++
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHH
Confidence 23444555555555555555555543 23333333333334444444443
No 181
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.95 E-value=0.0015 Score=51.54 Aligned_cols=52 Identities=27% Similarity=0.199 Sum_probs=23.0
Q ss_pred HhhhhcchhhHHHHHHHHHHhcccCccc-cchHHHHHHHHhcCCHHHHHHHHHH
Q 005474 520 LLEEQDIEGDFKKEATELFNSISKDVKK-AYCNCLIDLCVNLNLLENACKLLEL 572 (695)
Q Consensus 520 l~~~~~~~g~~~~eA~~l~~~~~~~~~~-~~~~~L~~~~~~~g~~~~A~~~l~~ 572 (695)
++.++...| ..++|.+++++....+.. ...-.++.+|.+.|++++|+++|++
T Consensus 31 la~~~~~~~-~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 31 LAQCYFQQG-KYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 344444444 445555554442222211 1222334556666666666666654
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.94 E-value=0.034 Score=58.46 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 005474 288 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330 (695)
Q Consensus 288 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 330 (695)
+.+.-+++|++.|-.|+... +...++-.|++.+|-++|.+
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 44455677788887777653 34456667888888887754
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.94 E-value=0.015 Score=53.00 Aligned_cols=27 Identities=15% Similarity=0.018 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005474 237 TYSSMIDAYGRAGNVEMAFGLYDRARN 263 (695)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 263 (695)
++..+...+...|++++|++.+++...
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444455555555555555555443
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.93 E-value=0.11 Score=56.37 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHH
Q 005474 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 485 (695)
Q Consensus 408 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 485 (695)
..+...|.++.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|...+++.... .|...+|.
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~~ 490 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTLY 490 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchHH
Confidence 4456777777666777899999999999999854 78888999999999999999999999988744 55544543
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.90 E-value=0.065 Score=56.51 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=49.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHH---------HHHHHHcCCCCCHHHHHHHHHHHHHcCCh--hHHHHHHHhchhCCCC
Q 005474 164 EVILYNVTMKVFRKCRDLDKAERL---------FDDMLDRGVKPDNVTFSTLISCARMNNLP--NKAVEWFERMPSFGCD 232 (695)
Q Consensus 164 ~~~~~~~li~~~~~~g~~~~A~~l---------~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~ 232 (695)
..+.+.+-+-.|...|.+++|.++ ++.+... ..+.-.+++.-.+|.+..+. -+.+.-+++|+++|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 333455555566677777777543 1111111 11233344444566555443 2344445677777777
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005474 233 PDALTYSSMIDAYGRAGNVEMAFGLYDR 260 (695)
Q Consensus 233 p~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (695)
|+... +...++-.|.+.+|-++|.+
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 77653 33445566777887777765
No 186
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.89 E-value=0.57 Score=46.88 Aligned_cols=142 Identities=20% Similarity=0.169 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHHcCChhHHH
Q 005474 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFR--KCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CARMNNLPNKAV 220 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~ 220 (695)
+..+...|..-.+.. -|.+|-.++. ..|+-..|.++-.+-.+. +.-|..-.-.|+. +-.-.|+++.|.
T Consensus 69 P~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 69 PYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred cHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 555666665544332 2555555543 346777776665543321 2234444444444 334467777777
Q ss_pred HHHHhchhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 221 EWFERMPSFGCDPDALT--YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 221 ~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
+-|+.|... |.... ...|.-..-+.|+.+.|...-++.-..- +.-...+.+.+...+..|+|+.|+++++.-++
T Consensus 141 ~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 141 KKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 777777651 22111 1222222345567777666666655432 23345666777777777777777777766543
No 187
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.89 E-value=0.033 Score=48.81 Aligned_cols=92 Identities=8% Similarity=-0.040 Sum_probs=64.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHc
Q 005474 345 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 424 (695)
Q Consensus 345 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 424 (695)
.+..-+...|++++|..+|+.+...... +..-|..|.-+|-..|++++|+..|....... +.|...+-.+..++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHc
Confidence 3444556677777777777777665443 44555557777777788888888887777665 46667777777777778
Q ss_pred CCHHHHHHHHHHHHH
Q 005474 425 GKVSEAEAMFNEMLE 439 (695)
Q Consensus 425 g~~~~A~~~~~~m~~ 439 (695)
|+.+.|.+-|+..+.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888877776665
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.75 E-value=0.38 Score=42.94 Aligned_cols=141 Identities=12% Similarity=0.087 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHH
Q 005474 371 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PNLFVL 449 (695)
Q Consensus 371 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~ 449 (695)
..|++..-..|..++...|+..+|...|++... |++--|......+.++....++..+|...++.+.+.... -+..+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 345666666677777788888888888877765 445677777777777777788888888888777764310 022334
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhcCCH--HHHHHHHHHHHHcCCC
Q 005474 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTPK--EELGKLVECVEKSNSK 512 (695)
Q Consensus 450 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~~~~~~~--~~a~~~~~~~~~~~p~ 512 (695)
..+...|...|++.+|...|+.....-..|... .|..++..-.+... .+...+++.+.+..|.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H 229 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPH 229 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchh
Confidence 456677777888888888888877653333333 33444332222222 4445566666655553
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.069 Score=50.16 Aligned_cols=132 Identities=10% Similarity=-0.001 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHH-----HH
Q 005474 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYS-----SM 241 (695)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-----~l 241 (695)
+-+.++..+...|.+.-...++++.+++..+.++.....|.+.-.+.|+.+.|...|++..+..-..|..+.+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3456666666777777777777777776555566666777777777777777777777665432222222222 23
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005474 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299 (695)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 299 (695)
...|.-.+++..|...|++....+ +.|++.-|.-.-+..-.|+..+|++.++.|++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334445566667777776666554 345555554444444456777777777777665
No 190
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.2 Score=50.34 Aligned_cols=83 Identities=11% Similarity=-0.073 Sum_probs=39.2
Q ss_pred HHcCCHhHHHHHHHHhhhC---CCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHH
Q 005474 457 GKAQRTDDVVRALNRLPEL---GITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKK 532 (695)
Q Consensus 457 ~~~g~~~~A~~~~~~m~~~---g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 532 (695)
.+.|++..|.+.+.+.+.. .+.|+...|.-...+..+.|+ .+|...-+.+.+++|.+...+-.-+.++...+ .|+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le-~~e 338 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE-KWE 338 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH-HHH
Confidence 3455555555555555411 122222333333334444555 55555555555555554444443444444434 455
Q ss_pred HHHHHHHh
Q 005474 533 EATELFNS 540 (695)
Q Consensus 533 eA~~l~~~ 540 (695)
+|.+-+++
T Consensus 339 ~AV~d~~~ 346 (486)
T KOG0550|consen 339 EAVEDYEK 346 (486)
T ss_pred HHHHHHHH
Confidence 55555544
No 191
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.70 E-value=0.28 Score=46.23 Aligned_cols=173 Identities=14% Similarity=0.164 Sum_probs=76.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 005474 241 MIDAYGRAGNVEMAFGLYDRARNEK--WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318 (695)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 318 (695)
....+...|++++|.+.|+++.... -+.-....-.++.++.+.|++++|...|+++.+.-..-....+...+.+.+.-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 3444556677777777777766542 11223344556667777777777777777766542211112222222222111
Q ss_pred CChHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 005474 319 KRPWQVKTIYKEMTDNGLSPN-------WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391 (695)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 391 (695)
....... . ...| ...+..++.-|=......+|...+..+.+. =...--.+.+-|.+.|.+
T Consensus 91 ~~~~~~~-------~--~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 91 KQIPGIL-------R--SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-H
T ss_pred HhCccch-------h--cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccH
Confidence 1110000 0 0000 112333444444455555555555444332 111112245556666666
Q ss_pred HHHHHHHHHhHhCCCCCCCH----HHHHHHHHHHHHcCCHHH
Q 005474 392 DEAFEIFEDMKSSENCQPDS----WTFSSMITICSCRGKVSE 429 (695)
Q Consensus 392 ~~A~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~ 429 (695)
..|..-++.+.+.- |++ .....++.+|.+.|..+.
T Consensus 158 ~aA~~r~~~v~~~y---p~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 158 KAAIIRFQYVIENY---PDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhCChHH
Confidence 66666666666542 222 223445555555555553
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.66 E-value=0.12 Score=43.65 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=22.8
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 005474 350 YGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKS 403 (695)
Q Consensus 350 ~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 403 (695)
+-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444443322 11222333444444445554444444443
No 193
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.63 E-value=1.3 Score=47.61 Aligned_cols=192 Identities=11% Similarity=0.053 Sum_probs=97.1
Q ss_pred HHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCh
Q 005474 139 LNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV--KPDNVTFSTLISCARMNNLP 216 (695)
Q Consensus 139 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~~~~~li~~~~~~g~~ 216 (695)
...++++++|.+++-.+.++ ...|..+.+.|++-...++++.-- .+. ..-...|+.+-..+.....+
T Consensus 744 ~~~~g~feeaek~yld~drr----------DLAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~W 812 (1189)
T KOG2041|consen 744 SAFYGEFEEAEKLYLDADRR----------DLAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEW 812 (1189)
T ss_pred hhhhcchhHhhhhhhccchh----------hhhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777665443 235666677777776666654311 000 00123556666666666666
Q ss_pred hHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005474 217 NKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296 (695)
Q Consensus 217 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 296 (695)
++|.+.|..-.. ....+.++.+..++++-+.+...+. -|....-.|..++.+.|.-++|.+.|-+.
T Consensus 813 e~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 813 EEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 666666654321 1234455555555555444444433 23344455556666666666666555433
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--------------HHHHHHHHHhCCChHHHHHH
Q 005474 297 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT--------------YASLLRAYGRARYGEDTLSV 362 (695)
Q Consensus 297 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--------------~~~li~~~~~~g~~~~A~~~ 362 (695)
.. |. ..+..|...++|.+|.++-+...- |...| ..--|..+.+.|+.-+|-++
T Consensus 879 s~----pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarl 945 (1189)
T KOG2041|consen 879 SL----PK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARL 945 (1189)
T ss_pred cC----cH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHH
Confidence 21 11 123444444555555444332211 11111 01235567777777777777
Q ss_pred HHHHHH
Q 005474 363 YREMKE 368 (695)
Q Consensus 363 ~~~m~~ 368 (695)
+.+|.+
T Consensus 946 l~qmae 951 (1189)
T KOG2041|consen 946 LSQMAE 951 (1189)
T ss_pred HHHHhH
Confidence 777754
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.55 E-value=0.14 Score=43.13 Aligned_cols=88 Identities=23% Similarity=0.132 Sum_probs=43.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHH
Q 005474 243 DAYGRAGNVEMAFGLYDRARNEKWRID--PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMG 316 (695)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~ 316 (695)
.++-..|+.++|+.+|++....|.... ...+-.+...|...|++++|+.+|++..... |+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 344455666666666666665553332 2234445555566666666666666555431 22 111122223445
Q ss_pred hcCChHHHHHHHHHHH
Q 005474 317 RAKRPWQVKTIYKEMT 332 (695)
Q Consensus 317 ~~g~~~~a~~~~~~m~ 332 (695)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566666655554433
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.52 E-value=0.0079 Score=45.11 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=21.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 248 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
.|++++|+++|+++.... +-+..++..+..+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444332 22344444444444444444444444444443
No 196
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.074 Score=51.50 Aligned_cols=94 Identities=15% Similarity=0.033 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhC-CCCCCHHHHHHHHHHHhcC--CH--HHHHHHHHHHHHcCCChhHHHHH
Q 005474 445 NLFVLTSLIQCYGKAQRTDDVVRALNRLPEL-GITPDDRFCGCLLNVMTQT--PK--EELGKLVECVEKSNSKLGYVVKL 519 (695)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~~ll~~~~~~--~~--~~a~~~~~~~~~~~p~~~~~~~~ 519 (695)
|...|..|...|...|+++.|...|.+..+. |-+ ...+..+..++... +. .++..+|+++.+.+|.+.....+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 8899999999999999999999999998753 333 33444444443332 22 88888999999999999888888
Q ss_pred HhhhhcchhhHHHHHHHHHHhc
Q 005474 520 LLEEQDIEGDFKKEATELFNSI 541 (695)
Q Consensus 520 l~~~~~~~g~~~~eA~~l~~~~ 541 (695)
|+..+.+.| .+.+|...++.|
T Consensus 233 LA~~afe~g-~~~~A~~~Wq~l 253 (287)
T COG4235 233 LAFAAFEQG-DYAEAAAAWQML 253 (287)
T ss_pred HHHHHHHcc-cHHHHHHHHHHH
Confidence 887776666 667777766665
No 197
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.48 E-value=0.015 Score=43.18 Aligned_cols=57 Identities=21% Similarity=0.367 Sum_probs=32.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005474 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299 (695)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 299 (695)
...+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|..+|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555566666666666666554 334555555566666666666666666665543
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.46 E-value=0.011 Score=44.30 Aligned_cols=49 Identities=29% Similarity=0.335 Sum_probs=22.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 424 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
.|++++|.++|+++.+... -+...+..+..+|.+.|++++|..+++++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555444221 144444444555555555555555555544
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.46 E-value=0.054 Score=54.09 Aligned_cols=60 Identities=12% Similarity=0.035 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 413 TFSSMITICSCRGKVSEAEAMFNEML----EAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
.|..|-..|.-.|+++.|+...+.-. +.|-+. ....+..+.+++.-.|+++.|.+.|+.-
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 34555555666777887776554332 222211 3346677777888888888888887754
No 200
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=1.3 Score=44.77 Aligned_cols=275 Identities=11% Similarity=0.033 Sum_probs=148.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhc
Q 005474 170 VTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDP-DALTYSSMIDAYGRA 248 (695)
Q Consensus 170 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 248 (695)
..-..+.+..++..|+..+...++.+. -+..-|..-...+...|++++|.--.+.-.+. .+ ......-.-+++...
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLAL 130 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhh
Confidence 345567777888888888888887642 24455555666677777777776555444432 22 122333344444445
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHhHHHH-HHHHHhcCChHHHHH
Q 005474 249 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNMITYNNL-LDTMGRAKRPWQVKT 326 (695)
Q Consensus 249 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l-i~~~~~~g~~~~a~~ 326 (695)
++..+|.+.++.-. .| ....++..++....... +|...+|..+ ...+.-.|++++|..
T Consensus 131 ~~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 55555555544111 11 11122222222222111 1333344333 234555677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH--HHhCCChHHHHHHHHHHHHcCCCCCHHH---HHHH----------HHHHHhcCCH
Q 005474 327 IYKEMTDNGLSPNWNTYASLLRA--YGRARYGEDTLSVYREMKEKGMQLSVTL---YNTL----------LAMCADVGYT 391 (695)
Q Consensus 327 ~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~l----------i~~~~~~g~~ 391 (695)
+--...+..- ...+...+++ +--.++.+.|...|++-+..+. +... ...+ ..-..+.|++
T Consensus 191 ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y 265 (486)
T KOG0550|consen 191 EAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKKERGNDAFKNGNY 265 (486)
T ss_pred HHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence 6666555321 1122222222 2234566677777766655432 2111 1111 2234577888
Q ss_pred HHHHHHHHHhHhCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHhHHH
Q 005474 392 DEAFEIFEDMKSSEN--CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV---LTSLIQCYGKAQRTDDVV 466 (695)
Q Consensus 392 ~~A~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~ 466 (695)
..|.+.|.+...... ..++...|........+.|+.++|+.--++..+ .|..- |..-..++...++|++|+
T Consensus 266 ~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 266 RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889888888765421 245555566666667788888888887777766 23322 222234556678888888
Q ss_pred HHHHHhhhCC
Q 005474 467 RALNRLPELG 476 (695)
Q Consensus 467 ~~~~~m~~~g 476 (695)
+-|++..+..
T Consensus 342 ~d~~~a~q~~ 351 (486)
T KOG0550|consen 342 EDYEKAMQLE 351 (486)
T ss_pred HHHHHHHhhc
Confidence 8888876543
No 201
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.33 E-value=0.019 Score=42.59 Aligned_cols=52 Identities=21% Similarity=0.134 Sum_probs=20.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|+.+|++++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444422 1133334444444444444444444444443
No 202
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.30 E-value=1.5 Score=44.36 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=36.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005474 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461 (695)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 461 (695)
|.-|...|+...|.++-.+.. .|+...|-..+.+++..+++++-.++... +..+.-|...+.+|.+.|+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 344444455444444433332 34555555555555555555544443221 1122444445555555555
Q ss_pred HhHHHHHHHH
Q 005474 462 TDDVVRALNR 471 (695)
Q Consensus 462 ~~~A~~~~~~ 471 (695)
..+|..+..+
T Consensus 253 ~~eA~~yI~k 262 (319)
T PF04840_consen 253 KKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHh
Confidence 5555544444
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.21 Score=48.40 Aligned_cols=109 Identities=15% Similarity=0.157 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCC-CHHHH
Q 005474 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR---GKVSEAEAMFNEMLEAGFEP-NLFVL 449 (695)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p-~~~~~ 449 (695)
|...|..|..+|...|+++.|..-|....+.. .++...+..+..++... ....++.++|+++... .| |+.+.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHH
Confidence 77888888888888888888888888887765 46666666666655432 2345788888888874 34 66666
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 005474 450 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 488 (695)
Q Consensus 450 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll 488 (695)
..|...+...|++.+|...|+.|.+. .|.......++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHH
Confidence 77777888888888888888888865 34333344443
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.27 E-value=0.044 Score=54.65 Aligned_cols=131 Identities=13% Similarity=-0.018 Sum_probs=69.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh----HhCCCCCCCHHH
Q 005474 343 YASLLRAYGRARYGEDTLSVYREMK----EKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDM----KSSENCQPDSWT 413 (695)
Q Consensus 343 ~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~p~~~~ 413 (695)
|..|.+.|.-.|+++.|+...+.-. +.|-+. -...+..|..+++-.|+++.|.+.|+.. .+.|.-......
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4444445555567777766554322 222111 1234555666666777777777776543 222211223344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 414 FSSMITICSCRGKVSEAEAMFNEMLE----A-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
.-+|...|.-..++++|+.++.+-.. . ...-....|.+|..+|...|..++|+.+.+.-.
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566666666666666666654332 0 011134566777777777777777776665443
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.26 E-value=0.5 Score=44.45 Aligned_cols=59 Identities=7% Similarity=-0.014 Sum_probs=37.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005474 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKP--NMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334 (695)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 334 (695)
....+...|++++|.+.|+++...-... -....-.++.++.+.|+++.|...+++..+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445667788888888888887653211 1234455667777888888888888877664
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=1.1 Score=42.43 Aligned_cols=143 Identities=14% Similarity=0.153 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHH-
Q 005474 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT- 419 (695)
Q Consensus 341 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~- 419 (695)
.+.+.++..+.-.|.+.-....+++++++..+.+......|.+.-.+.|+.+.|...|++..+... +.|..+++.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHh
Confidence 345567777777788888888888888887777888888899988999999999999998876554 555555554443
Q ss_pred ----HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHH
Q 005474 420 ----ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 487 (695)
Q Consensus 420 ----~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 487 (695)
.|.-..++.+|...+.+.....- .|+...|.-.-+..-.|+..+|++.++.|.+. .|...+-+++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 34556778888888887776431 24555555444555568889999999998854 5555544433
No 207
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.13 E-value=0.025 Score=42.50 Aligned_cols=61 Identities=16% Similarity=0.294 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHH
Q 005474 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NFDGCLNVYEEMK 297 (695)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 297 (695)
.+|..+...+...|++++|+..|++.++.. +-+..+|..+..+|.+.| ++++|++.|++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444555555555555555544432 223344444444444544 3455555444443
No 208
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.12 E-value=1.8 Score=43.70 Aligned_cols=111 Identities=10% Similarity=0.087 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHH
Q 005474 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421 (695)
Q Consensus 342 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 421 (695)
+.+..|.-+...|+...|.++-.+. + .||...|...+.+++..+++++-..+-.. +-.+.-|..++..|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHH
Confidence 4455566677888888887765544 2 36888999999999999999988776432 22346788999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
.+.|+..+|..+..++ .+..-+..|.++|++.+|.+.--+..
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 9999999999988772 12456788999999999988765543
No 209
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.93 E-value=0.035 Score=41.64 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC-CHhHHHHHHHHhh
Q 005474 413 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQ-RTDDVVRALNRLP 473 (695)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 473 (695)
+|..+...+...|++++|+..|++.++.. | +...|..+..+|.+.| ++++|++.+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444421 2 3334444444444444 3444444444443
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.80 E-value=0.056 Score=47.86 Aligned_cols=69 Identities=28% Similarity=0.429 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-----HcCCCCCHHh
Q 005474 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK-----AIGVKPNMIT 307 (695)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~ 307 (695)
...++..+...|++++|.++.+++.... +.|...|..+|.+|...|+..+|+++|+++. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4445556666677777777777766654 5566677777777777777777777776653 2355555443
No 211
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.77 E-value=0.074 Score=50.46 Aligned_cols=105 Identities=11% Similarity=0.153 Sum_probs=67.8
Q ss_pred CCCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHH
Q 005474 162 SKEVILYNVTMKVFRK-----CRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL 236 (695)
Q Consensus 162 ~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 236 (695)
..|-.+|-.++..+.. .+.++-....++.|.+.|++.|..+|+.||+.+-+.. +.|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-
Confidence 4566666666666533 3455666667788999999999999998887653321 22221
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 005474 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN 285 (695)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 285 (695)
.+....-.|- .+-+-+++++++|...|+.||..+-..|++++.+.+-
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1222222222 2234567888888888888888888888888877665
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.76 E-value=0.13 Score=50.19 Aligned_cols=87 Identities=11% Similarity=0.049 Sum_probs=41.9
Q ss_pred HHcCChhHHHHHHHhchhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcC
Q 005474 211 RMNNLPNKAVEWFERMPSFGCDPD----ALTYSSMIDAYGRAGNVEMAFGLYDRARNEK--WRIDPNAFSTLIKLYGTAG 284 (695)
Q Consensus 211 ~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g 284 (695)
.+.|++++|+..|+.+.+. .|+ ...+..+...|...|++++|...|+.+.+.- -+.....+-.+...|...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 3344555555555544442 122 1334445555555556666655555555431 0112233333444555566
Q ss_pred ChHHHHHHHHHHHHc
Q 005474 285 NFDGCLNVYEEMKAI 299 (695)
Q Consensus 285 ~~~~A~~~~~~m~~~ 299 (695)
+.++|..+|+++.+.
T Consensus 232 ~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 DTAKAKAVYQQVIKK 246 (263)
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666665554
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.70 E-value=0.16 Score=49.61 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHhhhC-CCCC-CHHHHHHH
Q 005474 414 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPN----LFVLTSLIQCYGKAQRTDDVVRALNRLPEL-GITP-DDRFCGCL 487 (695)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-d~~~~~~l 487 (695)
|...+..+.+.|++++|...|+.+++.. |+ ...+..+...|...|++++|+..|+.+.+. .-.| ....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4444433344555556655555555532 22 134445555556666666666666665532 1111 11122223
Q ss_pred HHHHhcCCH-HHHHHHHHHHHHcCCCh
Q 005474 488 LNVMTQTPK-EELGKLVECVEKSNSKL 513 (695)
Q Consensus 488 l~~~~~~~~-~~a~~~~~~~~~~~p~~ 513 (695)
...+...|+ ++|.+.++.+.+..|+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 333444444 66666666666555553
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.67 E-value=0.21 Score=42.62 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh-hCCCCCCHHHHHHHHH
Q 005474 442 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP-ELGITPDDRFCGCLLN 489 (695)
Q Consensus 442 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~pd~~~~~~ll~ 489 (695)
..|+..+..+++.+|+..|++..|+++.+... ..++.-+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44555555555555555555555555555544 3344445555555555
No 215
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.66 E-value=0.89 Score=38.22 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 005474 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 442 (695)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 442 (695)
....+..+.+.|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3445566666777777777777766533 56666677777777777777777777777776664
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.65 E-value=2.7 Score=42.97 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=12.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 005474 241 MIDAYGRAGNVEMAFGLYDRARN 263 (695)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~~~~ 263 (695)
++-.|-...+++...++++.+..
T Consensus 147 lllSyRdiqdydamI~Lve~l~~ 169 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEA 169 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhc
Confidence 33345555555666666555554
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.56 E-value=3.3 Score=42.39 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=45.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHH---cCChhHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 005474 171 TMKVFRKCRDLDKAERLFDDMLDRG---VKPDNVTFSTLISCARM---NNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244 (695)
Q Consensus 171 li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 244 (695)
++-.|....+++..+++.+.|...- +.-+...-....-++.+ .|+.++|++++..+....-.++..+|..+.+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3445778888888888888887541 00011111112224445 77788888888775554456677777776666
Q ss_pred HH
Q 005474 245 YG 246 (695)
Q Consensus 245 ~~ 246 (695)
|-
T Consensus 227 yK 228 (374)
T PF13281_consen 227 YK 228 (374)
T ss_pred HH
Confidence 54
No 218
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.51 E-value=0.2 Score=42.73 Aligned_cols=84 Identities=10% Similarity=0.032 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhC--------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005474 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS--------------ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439 (695)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (695)
|..++..+|.++++.|+++....+++..=.- ....|+..+..+++.+|+..|++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567888888899999988888888776211 11357888888899999889999999998888766
Q ss_pred -CCCCCCHHHHHHHHHHHH
Q 005474 440 -AGFEPNLFVLTSLIQCYG 457 (695)
Q Consensus 440 -~g~~p~~~~~~~li~~~~ 457 (695)
.+++-+..+|..|++-..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 566667888888887443
No 219
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.49 E-value=0.095 Score=39.75 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=27.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005474 244 AYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299 (695)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 299 (695)
.|.+.+++++|.++++++...+ +.+...|.....+|.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555443 334444444555555555555555555555543
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.43 E-value=0.1 Score=46.21 Aligned_cols=58 Identities=14% Similarity=0.256 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005474 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438 (695)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 438 (695)
..++..+...|++++|.++...+.... +-|...|..+|.+|...|+..+|.++|+++.
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 335555556666666666666666544 4556666666666666666666666665554
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.39 E-value=0.019 Score=44.36 Aligned_cols=59 Identities=17% Similarity=0.079 Sum_probs=37.3
Q ss_pred HHHHHhhhhcchhhHHHHHHHHHHhc-------cc-Ccc-ccchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005474 516 VVKLLLEEQDIEGDFKKEATELFNSI-------SK-DVK-KAYCNCLIDLCVNLNLLENACKLLELGLT 575 (695)
Q Consensus 516 ~~~~l~~~~~~~g~~~~eA~~l~~~~-------~~-~~~-~~~~~~L~~~~~~~g~~~~A~~~l~~~~~ 575 (695)
+++.+|..+...| .+++|.+.+++. +. .+. ..+++.++.++...|++++|+++++++++
T Consensus 7 ~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELG-RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555544444 455555554433 10 111 23678899999999999999999999875
No 222
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.38 E-value=0.21 Score=47.53 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------------CCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 005474 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA----------------QRTDDVVRALNRLPELGITPDDRFCGCLLNVM 491 (695)
Q Consensus 428 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~ 491 (695)
+-....++.|.+.|+..|..+|+.|++.+-+. .+-+-+++++++|...|+.||..+-..+++++
T Consensus 89 eFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~F 168 (406)
T KOG3941|consen 89 EFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAF 168 (406)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHh
Confidence 33333444455555555555555555444322 12345889999999999999999999999998
Q ss_pred hcCCH--HHHHHHHHHH
Q 005474 492 TQTPK--EELGKLVECV 506 (695)
Q Consensus 492 ~~~~~--~~a~~~~~~~ 506 (695)
.+.+- ....+++--|
T Consensus 169 Gr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 169 GRWNFPTKKVKRMLYWM 185 (406)
T ss_pred ccccccHHHHHHHHHhh
Confidence 88776 5555544444
No 223
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.10 E-value=0.15 Score=38.57 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=24.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 420 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
.|.+.+++++|.++++++...+. .+...|.....++.+.|++++|...|++..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444555555555555544321 133444444445555555555555555544
No 224
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.92 E-value=4.4 Score=40.23 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=60.1
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHHcCChhHHHHHHHhchhC--------CCCCC-----
Q 005474 176 RKCRDLDKAERLFDDMLDRG--VKPDN------VTFSTLISCARMNNLPNKAVEWFERMPSF--------GCDPD----- 234 (695)
Q Consensus 176 ~~~g~~~~A~~l~~~m~~~g--~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~----- 234 (695)
.+.|+++.|..++.+....- ..|+. ..||.-...+.+..+++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888887766432 22222 12333333333332666666665543321 11222
Q ss_pred HHHHHHHHHHHHhcCCH---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005474 235 ALTYSSMIDAYGRAGNV---EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299 (695)
Q Consensus 235 ~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 299 (695)
..++..++.+|...+.. ++|..+++.+.... +-.+.++-.-+..+.+.++.+++.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23444555555555543 33444444443332 222444444455555566666666666666554
No 225
>PRK11906 transcriptional regulator; Provisional
Probab=94.89 E-value=0.29 Score=50.64 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhc-ccCcccc-chHHHHHHHHhcCCHHHHHHHHHHHH
Q 005474 497 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKA-YCNCLIDLCVNLNLLENACKLLELGL 574 (695)
Q Consensus 497 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~~-~~~~L~~~~~~~g~~~~A~~~l~~~~ 574 (695)
.++.++.+.+.+++|+++.+...+|....-.+ ..+.|..+|++. ...|+.+ +|-..++.++-.|+.++|.+.+++++
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~-~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSG-QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc-chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45555666666677777766666666554445 366666666655 3445433 56666667777777777777777766
Q ss_pred HcC
Q 005474 575 TLE 577 (695)
Q Consensus 575 ~~~ 577 (695)
+..
T Consensus 400 rLs 402 (458)
T PRK11906 400 QLE 402 (458)
T ss_pred ccC
Confidence 554
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.84 E-value=0.099 Score=40.33 Aligned_cols=61 Identities=16% Similarity=0.350 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 413 TFSSMITICSCRGKVSEAEAMFNEMLEA----GF-EPN-LFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
+|+.+...|...|++++|++.|++..+. |- .|+ ..++..+..+|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555554431 11 011 3445555666666666666666666543
No 227
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.83 E-value=10 Score=43.99 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHhh
Q 005474 237 TYSSMIDAYGRAG--NVEMAFGLYDRARN 263 (695)
Q Consensus 237 ~~~~li~~~~~~g--~~~~A~~~~~~~~~ 263 (695)
-.-.+|..|.+.+ .+++|++...++..
T Consensus 792 ~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 792 FNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3345566666665 55666665555553
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.77 E-value=1.7 Score=46.67 Aligned_cols=95 Identities=24% Similarity=0.261 Sum_probs=50.7
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcCChhHHHHHHHhchhCC---CCCCHHHHH
Q 005474 168 YNVTMKVFRK----CRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWFERMPSFG---CDPDALTYS 239 (695)
Q Consensus 168 ~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~ 239 (695)
|+.++..+.. ....+.|.++++.+.++ -|+...|...-. .+...|++++|++.|++..... .+.....+-
T Consensus 232 y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~ 309 (468)
T PF10300_consen 232 YHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYF 309 (468)
T ss_pred HHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHH
Confidence 4444444433 34667777777777765 456655554443 5566777777777777544210 011122233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC
Q 005474 240 SMIDAYGRAGNVEMAFGLYDRARNE 264 (695)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~~~~~ 264 (695)
-+.-.+.-.+++++|...|.++.+.
T Consensus 310 El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 310 ELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHchHHHHHHHHHHHHhc
Confidence 3344444555666666666655543
No 229
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=8.1 Score=42.45 Aligned_cols=345 Identities=12% Similarity=0.054 Sum_probs=169.3
Q ss_pred cCCCCCHHHHH-----HHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCC
Q 005474 194 RGVKPDNVTFS-----TLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN---VEMAFGLYDRARNEK 265 (695)
Q Consensus 194 ~g~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g 265 (695)
-|++.+..-|. .+|+-+...+.+..|+++-..+...-..- ..+|.....-+.+..+ -+.+..+-+++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 36666665554 35566677788888888776664321111 4566666666666532 22233333333321
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC----CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 005474 266 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK----PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 341 (695)
Q Consensus 266 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 341 (695)
-.+...|..+.+.-...|+.+-|..+++.=...+.. .+..-+..-+.-+...|+.+....++-.|... .+..
T Consensus 504 -~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s 579 (829)
T KOG2280|consen 504 -LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRS 579 (829)
T ss_pred -CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHH
Confidence 144566777777777788888888877643222110 01223334445556666666666666655542 1111
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-HhCCCCCCCHHHHHHHHHH
Q 005474 342 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITI 420 (695)
Q Consensus 342 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~p~~~~~~~li~~ 420 (695)
.|...+ .+...|..+|.+..+.. |..+ +-+.|-...+...+-.+.-+- .....+.+-..........
T Consensus 580 ~l~~~l------~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 580 SLFMTL------RNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HHHHHH------HhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 121111 22344555555544321 1111 111222222222221111111 0000001111112222333
Q ss_pred HHHcCCHH----------HHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 005474 421 CSCRGKVS----------EAEAMFNEMLE-AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 489 (695)
Q Consensus 421 ~~~~g~~~----------~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~ 489 (695)
|.+..... .-.++.+.+.. .|..-.-.+.+--+.-+...|+..+|.++-.+.. .||...|..-+.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~ 723 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLT 723 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHH
Confidence 33333211 11122222221 2222223344445556667788888888877764 678888877777
Q ss_pred HHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccCccccchHHHHHHHHhcCCHHHHHH
Q 005474 490 VMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 568 (695)
Q Consensus 490 ~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ 568 (695)
++...++ ++.+++-+.... --.+..++.... +.| ..+||.+++.+.+..+ -...+|.+.|++.+|.+
T Consensus 724 aLa~~~kweeLekfAkskks-PIGy~PFVe~c~----~~~-n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKKS-PIGYLPFVEACL----KQG-NKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred HHHhhhhHHHHHHHHhccCC-CCCchhHHHHHH----hcc-cHHHHhhhhhccCChH------HHHHHHHHhccHHHHHH
Confidence 8877777 555555443321 111223343332 235 6788888887664332 46677888888888766
Q ss_pred HHHH
Q 005474 569 LLEL 572 (695)
Q Consensus 569 ~l~~ 572 (695)
+--+
T Consensus 792 ~A~~ 795 (829)
T KOG2280|consen 792 LAAE 795 (829)
T ss_pred HHHH
Confidence 5433
No 230
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.67 E-value=0.7 Score=48.92 Aligned_cols=129 Identities=15% Similarity=0.152 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 005474 203 FSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282 (695)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 282 (695)
.+.++.-+.+.|..+.|+++-. |.. .-.....+.|+++.|.++.++. .+...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 4455555555555555555421 211 1233344555555555433221 244455555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 005474 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 362 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 362 (695)
.|+++-|.+.|++..+ |..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence 5555555555554432 33344445555555555555555544431 22233333344555555444
Q ss_pred HH
Q 005474 363 YR 364 (695)
Q Consensus 363 ~~ 364 (695)
+.
T Consensus 425 L~ 426 (443)
T PF04053_consen 425 LI 426 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 231
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=9.1 Score=42.07 Aligned_cols=128 Identities=11% Similarity=0.042 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh--hHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 005474 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP--NKAVEWFERMPSFGCDPDALTYSSMIDAYG 246 (695)
Q Consensus 169 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 246 (695)
..+|+-+...+.+..|+++-..+...-.. +...|..-..-+.+..+. +++++.+++=..... -....|..+..-..
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 34566677778888888887666532111 134455555555554322 223333322222112 24456777777777
Q ss_pred hcCCHHHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 247 RAGNVEMAFGLYDRARNEKWR----IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 247 ~~g~~~~A~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
.+|+.+.|..+++.=...+-+ .+..-+..-+.-..+.|+.+-...++-.+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 889999998887653322211 1122334445556667777777776666654
No 232
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.49 E-value=5.7 Score=39.49 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=68.0
Q ss_pred HHcCChhHHHHHHHhchhCC--CCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhC--------CCCCCH----
Q 005474 211 RMNNLPNKAVEWFERMPSFG--CDPDA------LTYSSMIDAYGRAGNVEMAFGLYDRARNE--------KWRIDP---- 270 (695)
Q Consensus 211 ~~~g~~~~A~~~~~~m~~~g--~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------g~~~~~---- 270 (695)
.+.|+.+.|..++.+....- ..|+. ..|+.-...+.+..+++.|...+++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788999999988876532 23332 22333333333333777777766654432 112222
Q ss_pred -HHHHHHHHHHHHcCChH---HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005474 271 -NAFSTLIKLYGTAGNFD---GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334 (695)
Q Consensus 271 -~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 334 (695)
.++..++.+|...+..+ +|.++++.+...... ....+..-+..+.+.++.+++.+++.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 35566666776666543 455555555443211 2334444455666677777777777777764
No 233
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.43 E-value=2.7 Score=36.65 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc
Q 005474 169 NVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA 248 (695)
Q Consensus 169 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 248 (695)
..++..+.+.+.......+++.+...+. .+....+.++..|++.+ ..+.++.+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455555555666666666666655542 45555666666665442 2333333331 01122223345555555
Q ss_pred CCHHHHHHHHHHH
Q 005474 249 GNVEMAFGLYDRA 261 (695)
Q Consensus 249 g~~~~A~~~~~~~ 261 (695)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555443
No 234
>PRK11906 transcriptional regulator; Provisional
Probab=94.38 E-value=3.6 Score=42.89 Aligned_cols=109 Identities=11% Similarity=0.108 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHH
Q 005474 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRAL 469 (695)
Q Consensus 391 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 469 (695)
..+|.++-+...+.+ ..|......+..+....|+++.|...|++... +.|| ..+|......+.-.|+.++|.+.+
T Consensus 320 ~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 320 AQKALELLDYVSDIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455666666666655 45666666666655666667777777776666 3343 334444444455566677777666
Q ss_pred HHhhhCCCCCCH---HHHHHHHHHHhcCCHHHHHHHHHH
Q 005474 470 NRLPELGITPDD---RFCGCLLNVMTQTPKEELGKLVEC 505 (695)
Q Consensus 470 ~~m~~~g~~pd~---~~~~~ll~~~~~~~~~~a~~~~~~ 505 (695)
++..+. .|.. ......++.|+..+.+++.+++.+
T Consensus 396 ~~alrL--sP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQL--EPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHhcc--CchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 664432 3322 223333345555555555555443
No 235
>PRK15331 chaperone protein SicA; Provisional
Probab=94.36 E-value=3.2 Score=36.84 Aligned_cols=85 Identities=12% Similarity=0.003 Sum_probs=37.5
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005474 352 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 431 (695)
Q Consensus 352 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 431 (695)
..|++++|..+|.-+...+.. +..-+..|..+|-..+++++|+..|......+ .-|...+-....+|...|+.+.|.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHHHHH
Confidence 445555555555554443322 22333344444444455555555554443322 122222333344444455555555
Q ss_pred HHHHHHHH
Q 005474 432 AMFNEMLE 439 (695)
Q Consensus 432 ~~~~~m~~ 439 (695)
..|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55544444
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=5.2 Score=39.01 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=22.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005474 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297 (695)
Q Consensus 246 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 297 (695)
...|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555554444332 1223333444444455555555555544443
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.31 E-value=0.72 Score=47.78 Aligned_cols=63 Identities=11% Similarity=0.001 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDP----NAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
+...++.+..+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555566666666666666666655542 332 2355566666666666666666666555
No 238
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.28 E-value=4.8 Score=37.84 Aligned_cols=63 Identities=10% Similarity=-0.013 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005474 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333 (695)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 333 (695)
..+......+...+++..+...+...... ........+..+...+...+++..+.+.+.....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44444444455555555555555444431 1112233333344444444444455555444443
No 239
>PRK15331 chaperone protein SicA; Provisional
Probab=94.28 E-value=2.9 Score=37.12 Aligned_cols=91 Identities=11% Similarity=0.041 Sum_probs=70.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005474 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 460 (695)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 460 (695)
...-+...|++++|..+|.-+.-.+ .-+..-+..|...+-..+++++|...|......+. -|...+-....+|...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 3444567899999999999887766 34566677888888888999999999988766443 34455556778888999
Q ss_pred CHhHHHHHHHHhhh
Q 005474 461 RTDDVVRALNRLPE 474 (695)
Q Consensus 461 ~~~~A~~~~~~m~~ 474 (695)
+.+.|...|+..++
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988776
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=1 Score=45.56 Aligned_cols=119 Identities=13% Similarity=-0.018 Sum_probs=78.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005474 382 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 461 (695)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 461 (695)
...|.+.|++..|..-|++....=. |.+.-+.++...... .-..+++.+.-+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~--------------~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLE--------------YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhh--------------ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhh
Confidence 4678888999999988888654210 111111122221111 123456677788889999
Q ss_pred HhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhh
Q 005474 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEE 523 (695)
Q Consensus 462 ~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~ 523 (695)
+.+|++.-++.++.+ .+|....-.=..+|...|. +.|...|+++.+++|++-.+.+-|..+
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999999988887653 2244444444557777777 999999999999999887776666554
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.26 E-value=7.7 Score=40.70 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH--HHHHHHHHH
Q 005474 415 SSMITICSCRGKVSEAEAMFNEMLEAGF-EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR--FCGCLLNVM 491 (695)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--~~~~ll~~~ 491 (695)
..+..++.+.|+.++|.+.+++|.+... ..+......|+.++...+.+.++..++.+-.+.. -|... .|+..+-..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHHHHH
Confidence 3455555667777777777777765321 1233455667777777777777777777754321 23322 344433221
Q ss_pred ------------hcCCH----HHHHHHHHHHHHcCCChhHH
Q 005474 492 ------------TQTPK----EELGKLVECVEKSNSKLGYV 516 (695)
Q Consensus 492 ------------~~~~~----~~a~~~~~~~~~~~p~~~~~ 516 (695)
.+.|. ..|.+.++++.+.||..+.+
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 22232 23456677778888876654
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=5 Score=37.85 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=47.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 005474 165 VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDA 244 (695)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 244 (695)
...|.....+|...+++++|...+.+..+. .+-|...|.+ ...++.|.-+.++|.+. .--+..|+--..+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 344666666777788888887766665431 1222222221 12234444455555442 1123345556667
Q ss_pred HHhcCCHHHHHHHHHHHh
Q 005474 245 YGRAGNVEMAFGLYDRAR 262 (695)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~ 262 (695)
|..+|..+.|-..+++.-
T Consensus 101 Y~E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAA 118 (308)
T ss_pred HHHhCCcchHHHHHHHHH
Confidence 777777776666666544
No 243
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.19 E-value=3.5 Score=35.92 Aligned_cols=84 Identities=15% Similarity=0.202 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 005474 240 SMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 319 (695)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 319 (695)
.++..+...+........++.+...+ ..+...++.++..|++.+. .+.++.++. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444555555555555555544 2445555555555554422 222222221 112233333445555555
Q ss_pred ChHHHHHHHHHH
Q 005474 320 RPWQVKTIYKEM 331 (695)
Q Consensus 320 ~~~~a~~~~~~m 331 (695)
.++++..++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555544444443
No 244
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.06 E-value=8.3 Score=39.73 Aligned_cols=90 Identities=11% Similarity=0.115 Sum_probs=58.5
Q ss_pred HHHHHhCCCCCHH-HHHHHHHhhC---ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005474 121 SVLRCLGDDFLEQ-DCVIILNNMT---NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGV 196 (695)
Q Consensus 121 ~~l~~~~~~~~~~-~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 196 (695)
++-+...+.|+.- ....++..+. .++...+.++++..-.+ -=..+|...|+.=...+++...+.+|...+....
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp--~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFP--IMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCc--cccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 3334444544432 2233444443 47788888888865432 2345688888888888999999999999987744
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 005474 197 KPDNVTFSTLISCARMNN 214 (695)
Q Consensus 197 ~p~~~~~~~li~~~~~~g 214 (695)
+...|...+.--.+.+
T Consensus 108 --~ldLW~lYl~YIRr~n 123 (660)
T COG5107 108 --NLDLWMLYLEYIRRVN 123 (660)
T ss_pred --cHhHHHHHHHHHHhhC
Confidence 5777777776554433
No 245
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.02 E-value=4.3 Score=36.34 Aligned_cols=132 Identities=9% Similarity=0.199 Sum_probs=65.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhh
Q 005474 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAG--NVEMAFGLYDRARN 263 (695)
Q Consensus 186 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~ 263 (695)
+.++.+.+.|+.|+...+..+++.+.+.|++....+++ ..++-+|.......+-.+.... -.+-|++++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 34445555666666667777777777766654443333 3334444433333332222111 0223333333332
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005474 264 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333 (695)
Q Consensus 264 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 333 (695)
..+..++..+...|++-+|+++.+..... +......++.+..+.++...-..+|+-..+
T Consensus 90 -------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 -------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred -------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13455666666777777777766654221 222334455555555555554445444443
No 246
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.96 E-value=5.6 Score=37.38 Aligned_cols=168 Identities=15% Similarity=0.086 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 005474 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313 (695)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 313 (695)
...+......+...+++..+...+...... ........+..+...+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 455556666666667777666666665542 223444555666666666667777777777766543322 111111222
Q ss_pred -HHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005474 314 -TMGRAKRPWQVKTIYKEMTDNGL--SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390 (695)
Q Consensus 314 -~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 390 (695)
.+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 45556666666666665543111 011222222222233444444444444444433211122333334444444444
Q ss_pred HHHHHHHHHHhHh
Q 005474 391 TDEAFEIFEDMKS 403 (695)
Q Consensus 391 ~~~A~~~~~~m~~ 403 (695)
++.|...+.....
T Consensus 218 ~~~a~~~~~~~~~ 230 (291)
T COG0457 218 YEEALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
No 247
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.95 E-value=7.5 Score=38.83 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=11.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH
Q 005474 324 VKTIYKEMTDNGLSPNWNTYAS 345 (695)
Q Consensus 324 a~~~~~~m~~~~~~~~~~~~~~ 345 (695)
...+++.|.+.|+.-+..+|-+
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHhccCccChHHHH
Confidence 4445555555555555444443
No 248
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.80 E-value=1.2 Score=46.22 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=55.3
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHhchhC
Q 005474 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDN----VTFSTLISCARMNNLPNKAVEWFERMPSF 229 (695)
Q Consensus 162 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 229 (695)
+.+...|+.+..+|.+.|++++|+..|+..++. .|+. .+|..+..+|...|+.++|++.|++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778999999999999999999999998876 4553 35888888999999999999999888774
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.78 E-value=1.7 Score=45.99 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=7.8
Q ss_pred HHHHHHHHHHcCChHHHHHH
Q 005474 273 FSTLIKLYGTAGNFDGCLNV 292 (695)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~ 292 (695)
.+.++.-+-+.|..+.|+++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~ 317 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQF 317 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhh
Confidence 33344444444444444433
No 250
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.68 E-value=9.9 Score=39.33 Aligned_cols=396 Identities=14% Similarity=0.125 Sum_probs=192.5
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHH
Q 005474 145 PDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDR--GVKP------------DNVTFSTLISCA 210 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p------------~~~~~~~li~~~ 210 (695)
.+.-...+..+++..+..+-...|..+. +-+.+.+++|++.+..-..+ +..+ |-..=+..+.++
T Consensus 61 ld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sL 138 (549)
T PF07079_consen 61 LDLMEKQLMELRQQFGKSAYLPLFKALV--AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSL 138 (549)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHH
Confidence 4444444455555543333333333332 45788999998888776544 2222 222235566788
Q ss_pred HHcCChhHHHHHHHhchh----CCCCCCHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHhhC------C
Q 005474 211 RMNNLPNKAVEWFERMPS----FGCDPDALTYSSMIDAYGRAGNV---------------EMAFGLYDRARNE------K 265 (695)
Q Consensus 211 ~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~li~~~~~~g~~---------------~~A~~~~~~~~~~------g 265 (695)
+..|++.++..++++|.. +.+.-+..+|+.++-++++.--. +.+.-...+|... .
T Consensus 139 Ie~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k 218 (549)
T PF07079_consen 139 IETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEK 218 (549)
T ss_pred HhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHh
Confidence 999999999999888764 34557889999877776654211 1222222222211 1
Q ss_pred CCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----C
Q 005474 266 WRIDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNM-ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS----P 338 (695)
Q Consensus 266 ~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~ 338 (695)
+.|.......++....-. .+..--.++++.....-+.|+- .....|+..+.+ +.+++..+-+.+....+. -
T Consensus 219 ~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~ 296 (549)
T PF07079_consen 219 FIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEE 296 (549)
T ss_pred hCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHH
Confidence 222223333333222211 1111122222222222234432 222333333333 444444444333322111 1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHH----hcCCHHHHHHHHHHhHhCCCCCC
Q 005474 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT-----LYNTLLAMCA----DVGYTDEAFEIFEDMKSSENCQP 409 (695)
Q Consensus 339 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~p 409 (695)
=..+|..++....+.++...|.+.+.-+.-........ +-..+.+..+ ..-+...-+.+++.....++ .
T Consensus 297 li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--D 374 (549)
T PF07079_consen 297 LIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--D 374 (549)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--c
Confidence 23467777777788888888888777665542221100 0011112222 11223444455555554432 2
Q ss_pred CHHHHHHHHHH---HHHcCC-HHHHHHHHHHHHHCCCCC-CHHHHHHHH----HHHHHc---CCHhHHHHHHHHhhhCCC
Q 005474 410 DSWTFSSMITI---CSCRGK-VSEAEAMFNEMLEAGFEP-NLFVLTSLI----QCYGKA---QRTDDVVRALNRLPELGI 477 (695)
Q Consensus 410 ~~~~~~~li~~---~~~~g~-~~~A~~~~~~m~~~g~~p-~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~ 477 (695)
.......|+.+ +.+.|. -++|.++++.+.+ +.+ |..+-|.+. .+|... ..+.+-+++-+-..+.|+
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 22222333332 445555 7788888888877 333 444333322 233222 222333333333346677
Q ss_pred CCCHH----HHHHHHHH--HhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccCccccch
Q 005474 478 TPDDR----FCGCLLNV--MTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYC 550 (695)
Q Consensus 478 ~pd~~----~~~~ll~~--~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~~~~~~~ 550 (695)
.|-.+ .-+.+-+| +...|+ .++.-+-.-+.++.| .+.++.++|-++.... .++||.+++..+|. +..++
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k-~Y~eA~~~l~~LP~--n~~~~ 528 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENK-RYQEAWEYLQKLPP--NERMR 528 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHh-hHHHHHHHHHhCCC--chhhH
Confidence 76332 33333332 122344 444444445566777 5667777777776655 77888888877754 33444
Q ss_pred HH
Q 005474 551 NC 552 (695)
Q Consensus 551 ~~ 552 (695)
|+
T Consensus 529 ds 530 (549)
T PF07079_consen 529 DS 530 (549)
T ss_pred HH
Confidence 43
No 251
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=1.1 Score=45.41 Aligned_cols=137 Identities=15% Similarity=0.099 Sum_probs=78.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 005474 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391 (695)
Q Consensus 312 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 391 (695)
.+.|.+.|++..|...|+..... | -|.+.-+.++.... ..+ -...++.|.-+|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l-~~~~~~~~ee~~~~-~~~-------k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------L-EYRRSFDEEEQKKA-EAL-------KLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------h-hccccCCHHHHHHH-HHH-------HHHHhhHHHHHHHhhhhH
Confidence 36778888888888877776541 0 00111111111111 111 223455577778888888
Q ss_pred HHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHhH-HHHHH
Q 005474 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF-VLTSLIQCYGKAQRTDD-VVRAL 469 (695)
Q Consensus 392 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~-A~~~~ 469 (695)
.+|++..+.....+ ++|....-.-..+|...|+++.|+..|+++++ +.|+-. .-+.++.+--+..+..+ ..++|
T Consensus 274 ~~Ai~~c~kvLe~~--~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 274 KEAIESCNKVLELD--PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHhcC--CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887766 56766666666777777777888887777777 445333 33333333333333322 24555
Q ss_pred HHhh
Q 005474 470 NRLP 473 (695)
Q Consensus 470 ~~m~ 473 (695)
..|.
T Consensus 350 ~~mF 353 (397)
T KOG0543|consen 350 ANMF 353 (397)
T ss_pred HHHh
Confidence 5554
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.63 E-value=6.9 Score=37.41 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 005474 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEK--WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313 (695)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 313 (695)
..|+.-+. -.+.|++++|.+.|+.+.... -+....+--.++-++.+.+++++|+..+++....-..-...-|...|.
T Consensus 36 ~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 34444333 346678888888888777542 122344555566677778888888888887766533223334444444
Q ss_pred HHH
Q 005474 314 TMG 316 (695)
Q Consensus 314 ~~~ 316 (695)
+++
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 444
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=6.4 Score=38.40 Aligned_cols=145 Identities=16% Similarity=0.125 Sum_probs=92.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC
Q 005474 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250 (695)
Q Consensus 171 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 250 (695)
-.......|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3445677899999999998888763 223455666777899999999999999888754222222222334455555555
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcC
Q 005474 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAK 319 (695)
Q Consensus 251 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g 319 (695)
..+...+-.++-.. +-|...-..+...|...|+.++|++.+-.+... |.. |...-..|++.+.--|
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 55555555555442 336777777888888888888888777666543 222 4445555555555544
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.45 E-value=4.9 Score=40.12 Aligned_cols=97 Identities=11% Similarity=-0.014 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHH
Q 005474 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP---DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-----FEPNLFV 448 (695)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~ 448 (695)
.|..+.+++.+.-++.+++.+-+.-.......+ ......++..++.-.+.++++++.|+...+.- ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344455555555555666555544332211111 11233445666667778888888888776521 1113457
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 449 LTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 449 ~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
|-.|...|.+..++++|.-+..+..
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 8888888999999998888776654
No 255
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.43 E-value=4.1 Score=40.70 Aligned_cols=129 Identities=13% Similarity=0.310 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----ChhHHHHHHHhchhCC---CCCCHHHHHHHHHHHHhcCC-
Q 005474 181 LDKAERLFDDMLDRGVKPDNVTFSTLISCARM--NN----LPNKAVEWFERMPSFG---CDPDALTYSSMIDAYGRAGN- 250 (695)
Q Consensus 181 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~- 250 (695)
+++.+.+++.|.+.|+.-+..+|-+....... .. ...+|.++|+.|++.. ..++...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566788888888888777666554333322 11 2456777888887643 12345555555444 2233
Q ss_pred ---HHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCHHhHHHH
Q 005474 251 ---VEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGN--FDGCLNVYEEMKAIGVKPNMITYNNL 311 (695)
Q Consensus 251 ---~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l 311 (695)
.+.++..|+.+.+.|+..+-. ....++........ ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 345566666666655443322 22222222211111 33556666666666666555555444
No 256
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.37 E-value=11 Score=38.87 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005474 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-C-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439 (695)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (695)
...+|..++..+.+.|+++.|...+..+...+. . ..+......-.......|+..+|...+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667777778888888888887777765331 0 11333444445556667777777777777766
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.17 E-value=2.7 Score=35.36 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=50.0
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcC
Q 005474 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV---LTSLIQCYGKAQ 460 (695)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g 460 (695)
+++..|+++.|++.|.+....- +-+...||.-.+++.-+|+.++|++-+++..+..-..+... |..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3455666666666666665432 45566666666666666666666666666665211112222 222223455566
Q ss_pred CHhHHHHHHHHhhhCC
Q 005474 461 RTDDVVRALNRLPELG 476 (695)
Q Consensus 461 ~~~~A~~~~~~m~~~g 476 (695)
+-+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666554444
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.05 E-value=15 Score=39.58 Aligned_cols=162 Identities=16% Similarity=0.132 Sum_probs=83.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC-CCCC-----HHhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHH
Q 005474 274 STLIKLYGTAGNFDGCLNVYEEMKAIG-VKPN-----MITYNNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPNWNTY 343 (695)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~ 343 (695)
..++....=.||-+.+++.+.+..+.+ +.-. .-.|..++..++. ....+.|.++++.+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 344444455566666666665544321 1111 1123333332222 34556677777777664 2555544
Q ss_pred HHH-HHHHHhCCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHH
Q 005474 344 ASL-LRAYGRARYGEDTLSVYREMKEKG---MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 419 (695)
Q Consensus 344 ~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 419 (695)
... ...+...|++++|++.|+...... .+.....+--+.-.+.-.+++++|.+.|..+.+... ....+|.-+..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~--WSka~Y~Y~~a 347 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK--WSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc--cHHHHHHHHHH
Confidence 433 234455677777777777543211 111233344455666677777777777777777552 33444433332
Q ss_pred H-HHHcCCH-------HHHHHHHHHHHH
Q 005474 420 I-CSCRGKV-------SEAEAMFNEMLE 439 (695)
Q Consensus 420 ~-~~~~g~~-------~~A~~~~~~m~~ 439 (695)
+ +...|+. ++|.++|.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 2 3345555 677777776643
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.83 E-value=2.7 Score=41.39 Aligned_cols=119 Identities=14% Similarity=0.014 Sum_probs=80.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCH----HHHHHHHHHHHhcCC
Q 005474 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDA----LTYSSMIDAYGRAGN 250 (695)
Q Consensus 175 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~ 250 (695)
+...|++.+|-..++++++. .+.|...++..=.+|.-.|+...-...++++.-.- .+|. .+-..+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhcc
Confidence 34567777777778887765 45577777777778888888877777777766431 2333 222333444556788
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005474 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 296 (695)
Q Consensus 251 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 296 (695)
+++|++.-++..+.+ +-|...-.++...+--.|++.++.+...+-
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 888888888877665 556677777777777788888887776553
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.64 E-value=9.9 Score=39.93 Aligned_cols=58 Identities=7% Similarity=0.163 Sum_probs=32.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 005474 346 LLRAYGRARYGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403 (695)
Q Consensus 346 li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 403 (695)
+..+.-+.|+.++|.+.|++|.+..... .......|+.++...+.+.++..++.+..+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 4444455666666666666665432221 222344466666666666666666666544
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.45 E-value=3.2 Score=34.92 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=27.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchh
Q 005474 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228 (695)
Q Consensus 175 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 228 (695)
+...|+.+.|++.|...+.. .+-....||.-..++.-.|+.++|++-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 44555666666655555443 122444555555555555555555555554443
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.41 E-value=4.7 Score=34.89 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=28.3
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005474 384 MCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 440 (695)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 440 (695)
...+.|++++|.+.|+.+...-.. .-....-..|+.+|.+.+++++|...+++.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 334455666666666655543210 112233444555555555555555555555553
No 263
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.33 E-value=21 Score=40.02 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcccCccccchHHHHHHHHhcCCHHHHHHHHHHH
Q 005474 530 FKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELG 573 (695)
Q Consensus 530 ~~~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~~ 573 (695)
..+++..+.+..... ++..|-.++..+.+.+..+.-.++..+.
T Consensus 720 d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 720 DPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred ChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 456666666555433 5557777777777777655444443333
No 264
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.31 E-value=9.4 Score=35.39 Aligned_cols=87 Identities=10% Similarity=0.040 Sum_probs=56.0
Q ss_pred HHHhhCChHHHHHHHHHHHhcCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 005474 138 ILNNMTNPDTAALALTYFTNKLKASKE-VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLP 216 (695)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 216 (695)
++++++-+.-|.--|...... .|+ +.+||.+.-.+...|+++.|.+.|+...+....-+-...|--|. +--.|++
T Consensus 74 lYDSlGL~~LAR~DftQaLai---~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~ 149 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAI---RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRY 149 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhc---CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCch
Confidence 445555566666666666554 343 55689888888999999999999999887632222222222222 2336788
Q ss_pred hHHHHHHHhchh
Q 005474 217 NKAVEWFERMPS 228 (695)
Q Consensus 217 ~~A~~~~~~m~~ 228 (695)
..|.+-|.+.-+
T Consensus 150 ~LAq~d~~~fYQ 161 (297)
T COG4785 150 KLAQDDLLAFYQ 161 (297)
T ss_pred HhhHHHHHHHHh
Confidence 888776665544
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.23 E-value=2.2 Score=47.14 Aligned_cols=213 Identities=14% Similarity=0.110 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HcC------------CCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCC
Q 005474 167 LYNVTMKVFRKCRDLDKAERLFDDML----DRG------------VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFG 230 (695)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~l~~~m~----~~g------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 230 (695)
+.+.++.+|...+++-.-.-++.... ..+ ..........-|..+.+...++.|+.+-+.- +
T Consensus 285 s~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~---~ 361 (933)
T KOG2114|consen 285 SSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ---H 361 (933)
T ss_pred chhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc---C
Confidence 35666777766666543333333322 222 0112233445566666666777776665432 1
Q ss_pred CCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 005474 231 CDPDALTYSSMI----DAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306 (695)
Q Consensus 231 ~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 306 (695)
.|..+...+. +.+.+.|++++|...|-+-+.. +.| ..+|.-|....+..+-..+++.+.+.|+. +..
T Consensus 362 --~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~d 432 (933)
T KOG2114|consen 362 --LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSD 432 (933)
T ss_pred --CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cch
Confidence 2333333333 3344567888887777665532 112 23455556666666777777777777764 566
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005474 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386 (695)
Q Consensus 307 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 386 (695)
.-..|+.+|.+.++.+.-.+..+... .|.. ..-....+..+.+.+.+++|..+-..... +...... .+-
T Consensus 433 httlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle 501 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLE 501 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHH
Confidence 66777888888888777666665443 2211 11133455666666666666655433322 2333332 334
Q ss_pred hcCCHHHHHHHHHHhH
Q 005474 387 DVGYTDEAFEIFEDMK 402 (695)
Q Consensus 387 ~~g~~~~A~~~~~~m~ 402 (695)
..+++++|++++..+.
T Consensus 502 ~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 502 DLHNYEEALRYISSLP 517 (933)
T ss_pred HhcCHHHHHHHHhcCC
Confidence 5677888888877663
No 266
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.01 E-value=12 Score=35.89 Aligned_cols=55 Identities=7% Similarity=-0.039 Sum_probs=34.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005474 280 YGTAGNFDGCLNVYEEMKAIGVK--PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 334 (695)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 334 (695)
-.+.|++++|.+.|+.+....+- -...+.-.++.++.+.+++++|...+++..+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34567888888888877754211 12334444556667777777777777776654
No 267
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.99 E-value=30 Score=40.47 Aligned_cols=134 Identities=13% Similarity=0.182 Sum_probs=78.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005474 311 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA----YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 386 (695)
Q Consensus 311 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 386 (695)
.++.--+.|.+.+|..++ .|+...+..+..+ +.+...+++|--.|+..-+. .--+.+|.
T Consensus 914 ~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~ 976 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYK 976 (1265)
T ss_pred HHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHH
Confidence 334444455555555443 3455444444433 34556666666666544221 12466777
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 005474 387 DVGYTDEAFEIFEDMKSSENCQPDSWT--FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 464 (695)
Q Consensus 387 ~~g~~~~A~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 464 (695)
.+|++.+|+.+..++... -|... -..|+.-+...++.-+|-++..+.... | .-.+..|++...|++
T Consensus 977 ~~~dWr~~l~~a~ql~~~----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEG----KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEE 1044 (1265)
T ss_pred HhccHHHHHHHHHhhcCC----HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHH
Confidence 888888888888777542 22222 245666777788888888887776642 1 234556677778888
Q ss_pred HHHHHHHhh
Q 005474 465 VVRALNRLP 473 (695)
Q Consensus 465 A~~~~~~m~ 473 (695)
|+++-....
T Consensus 1045 Alrva~~~~ 1053 (1265)
T KOG1920|consen 1045 ALRVASKAK 1053 (1265)
T ss_pred HHHHHHhcc
Confidence 887766543
No 268
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.98 E-value=23 Score=39.15 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHH-----HHHcCChHHHHHHHHHHHH
Q 005474 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKL-----YGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 251 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~ 298 (695)
...|.+.++...+.| +...-..+..+ +....+.+.|+.+|+...+
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 345666666666554 22222222221 2344566666666666554
No 269
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.98 E-value=22 Score=39.90 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=18.4
Q ss_pred chHHHHH-----HHHhcCCHHHHHHHHHHHHHcCcccC
Q 005474 549 YCNCLID-----LCVNLNLLENACKLLELGLTLEVYTD 581 (695)
Q Consensus 549 ~~~~L~~-----~~~~~g~~~~A~~~l~~~~~~~~~~~ 581 (695)
++..|++ .++..|++++|.+.+++ .++.|.
T Consensus 502 t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~---L~liP~ 536 (613)
T PF04097_consen 502 TFQLLLDLAEFFDLYHAGQYEQALDIIEK---LDLIPL 536 (613)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHH---TT-S-S
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHh---CCCCCC
Confidence 4555554 46788999999887765 556663
No 270
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.97 E-value=1.8 Score=42.26 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHhHHH
Q 005474 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA-----IGVKPNMITYNN 310 (695)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 310 (695)
.++..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.. .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566777777777777777777777665 56677777777777777777777777776654 466666555544
Q ss_pred HHHH
Q 005474 311 LLDT 314 (695)
Q Consensus 311 li~~ 314 (695)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 271
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.76 E-value=0.14 Score=32.07 Aligned_cols=32 Identities=16% Similarity=-0.090 Sum_probs=19.1
Q ss_pred HHHHHHcCCChhHHHHHHhhhhcchhhHHHHHH
Q 005474 503 VECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT 535 (695)
Q Consensus 503 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~ 535 (695)
+++.++.+|++..++..||..+...| .+++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g-~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQG-DYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCc-CHHhhc
Confidence 45556666776666666666655555 445543
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.59 E-value=0.35 Score=30.70 Aligned_cols=26 Identities=23% Similarity=0.124 Sum_probs=22.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005474 550 CNCLIDLCVNLNLLENACKLLELGLT 575 (695)
Q Consensus 550 ~~~L~~~~~~~g~~~~A~~~l~~~~~ 575 (695)
|..|+.+|.+.|++++|++++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999764
No 273
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.46 E-value=28 Score=39.10 Aligned_cols=427 Identities=14% Similarity=0.048 Sum_probs=215.0
Q ss_pred hHHHHHHHHHHHhcCCCCC--CHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHHcCCh
Q 005474 145 PDTAALALTYFTNKLKASK--EVILYNVTMKVFR-KCRDLDKAERLFDDMLDRGVKPDNV-----TFSTLISCARMNNLP 216 (695)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~-----~~~~li~~~~~~g~~ 216 (695)
...|+..++.+.+...+.| +..++--+...|. ...++++|+..+++.....-.++.. .-..++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 4567777777765555555 3445666667665 6788999999988765432222222 122344566666655
Q ss_pred hHHHHHHHhchhC----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHH--HcCCh
Q 005474 217 NKAVEWFERMPSF----GCDPDALTYSSM-IDAYGRAGNVEMAFGLYDRARNEK---WRIDPNAFSTLIKLYG--TAGNF 286 (695)
Q Consensus 217 ~~A~~~~~~m~~~----g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~--~~g~~ 286 (695)
. |...+++..+. +..+-...|..+ +..+...++...|.+.++.+...- ..+-..++-.++.+.. +.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 88877776542 122223334444 333334478888998888776532 2333444445554444 35556
Q ss_pred HHHHHHHHHHHHcCC---------CCCHHhHHHHHHHH--HhcCChHHHHHHHHHHHH-------CC-C---C-------
Q 005474 287 DGCLNVYEEMKAIGV---------KPNMITYNNLLDTM--GRAKRPWQVKTIYKEMTD-------NG-L---S------- 337 (695)
Q Consensus 287 ~~A~~~~~~m~~~g~---------~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~-------~~-~---~------- 337 (695)
+++.+.++++..... .|...+|..+++.+ ...|+++.+...++++.+ .. . .
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 777777777643221 23456677676654 456776676666555432 10 0 0
Q ss_pred ------------CCH---------HHHHHHHHH--HHhCCChHHHHHHHHHH-------H-HcCCCCC--------HHHH
Q 005474 338 ------------PNW---------NTYASLLRA--YGRARYGEDTLSVYREM-------K-EKGMQLS--------VTLY 378 (695)
Q Consensus 338 ------------~~~---------~~~~~li~~--~~~~g~~~~A~~~~~~m-------~-~~~~~~~--------~~~~ 378 (695)
+.. ....-++.+ ++..+..+.|.+++++. . .....++ ...|
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~ 355 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW 355 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH
Confidence 000 011111222 23344444665555543 3 1111111 1122
Q ss_pred HHHHH---------HHHhcCCHHHHHHHHHHhHhCCCCCCC-----HHHHHHHHHH--HHHcCCHHHHHHHHH-------
Q 005474 379 NTLLA---------MCADVGYTDEAFEIFEDMKSSENCQPD-----SWTFSSMITI--CSCRGKVSEAEAMFN------- 435 (695)
Q Consensus 379 ~~li~---------~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~li~~--~~~~g~~~~A~~~~~------- 435 (695)
...+. ..+-.|++..|...++.|.+...-.|+ ...+...+.+ +...|+.+.|...|.
T Consensus 356 ~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~ 435 (608)
T PF10345_consen 356 LRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLC 435 (608)
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhh
Confidence 22222 223468899999999988764321122 2233333333 345799999999997
Q ss_pred -HHHHCCCCCCHHHHHHH--HHHHHHcC--CHhH--HHHHHHHhhh-CCCCC--CHHHHHHHH-HHHhcCCH---HHHHH
Q 005474 436 -EMLEAGFEPNLFVLTSL--IQCYGKAQ--RTDD--VVRALNRLPE-LGITP--DDRFCGCLL-NVMTQTPK---EELGK 501 (695)
Q Consensus 436 -~m~~~g~~p~~~~~~~l--i~~~~~~g--~~~~--A~~~~~~m~~-~g~~p--d~~~~~~ll-~~~~~~~~---~~a~~ 501 (695)
.....+...+..++..+ +-.+...+ ..++ +-.+++.+.. ..-.| +..++..++ .++..... .++..
T Consensus 436 ~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~ 515 (608)
T PF10345_consen 436 EAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKR 515 (608)
T ss_pred hhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHH
Confidence 44444544444444332 11222222 2223 6777776653 22233 333444443 33322221 34444
Q ss_pred HHHHHH-----HcCC-Ch-hHHHHHHhhhhcchhhHHHHHHHHH-H---hcccCc--cccchH-----HHHHHHHhcCCH
Q 005474 502 LVECVE-----KSNS-KL-GYVVKLLLEEQDIEGDFKKEATELF-N---SISKDV--KKAYCN-----CLIDLCVNLNLL 563 (695)
Q Consensus 502 ~~~~~~-----~~~p-~~-~~~~~~l~~~~~~~g~~~~eA~~l~-~---~~~~~~--~~~~~~-----~L~~~~~~~g~~ 563 (695)
.+.... ..+. .. ...+++++..+. .| ...|..+.. . .+...+ ....|- .+.+.+...|+.
T Consensus 516 ~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~-~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~ 593 (608)
T PF10345_consen 516 HLQEALKMANNKLGNSQLLAILLNLMGHRLF-EG-DVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDR 593 (608)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcH
Confidence 333222 1111 11 234577776665 23 333333332 2 122222 333662 344568888999
Q ss_pred HHHHHHHHHHH
Q 005474 564 ENACKLLELGL 574 (695)
Q Consensus 564 ~~A~~~l~~~~ 574 (695)
++|....++..
T Consensus 594 ~ka~~~~~~~~ 604 (608)
T PF10345_consen 594 DKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHH
Confidence 99988877654
No 274
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.45 E-value=4 Score=39.35 Aligned_cols=88 Identities=13% Similarity=0.067 Sum_probs=38.6
Q ss_pred hCCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-CCCCHHHHHHHHHHHHHcCCHH
Q 005474 352 RARYGEDTLSVYREMKEKGMQ--LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVS 428 (695)
Q Consensus 352 ~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~ 428 (695)
+.|++..|...|....+.... -....+..|..++...|++++|..+|..+.+... .+.-+..+--|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344455555555555443211 1122233345555555555555555555544221 0111233344444444555555
Q ss_pred HHHHHHHHHHH
Q 005474 429 EAEAMFNEMLE 439 (695)
Q Consensus 429 ~A~~~~~~m~~ 439 (695)
+|..+|++..+
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 275
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.15 E-value=5.2 Score=34.64 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=28.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhhh
Q 005474 422 SCRGKVSEAEAMFNEMLEAGF-EP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
.+.|++++|.+.|+.+...-. .+ ....-..++.+|.+.|++++|+..+++.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345666666666666655311 11 233444555566666666666666666554
No 276
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.12 E-value=28 Score=38.48 Aligned_cols=85 Identities=19% Similarity=0.191 Sum_probs=41.0
Q ss_pred hcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 005474 177 KCRDLDKAERLFDDMLD-------RGVKPDNVTFSTLISCARMNN-----LPNKAVEWFERMPSFGCDPDALTYSSMIDA 244 (695)
Q Consensus 177 ~~g~~~~A~~l~~~m~~-------~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 244 (695)
...+.+.|+..|+.+.+ .| +....+-+-.+|.+.. +.+.|+.+|.+.-+.| .|+...+-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 44567777777766655 33 2223344444444432 3445666665555544 2333322222222
Q ss_pred HHh-cCCHHHHHHHHHHHhhCC
Q 005474 245 YGR-AGNVEMAFGLYDRARNEK 265 (695)
Q Consensus 245 ~~~-~g~~~~A~~~~~~~~~~g 265 (695)
... ..+...|.++|....+.|
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcC
Confidence 222 234556666666666555
No 277
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.08 E-value=0.59 Score=31.21 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhh
Q 005474 448 VLTSLIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
++..+...|...|++++|+++|++.++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555553
No 278
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.91 E-value=19 Score=36.16 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=25.5
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHH
Q 005474 383 AMCADVGYTDEAFEIFEDMKSSENCQPDSWT----FSSMITICSCRGKVSEAEAMFNEM 437 (695)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~----~~~li~~~~~~g~~~~A~~~~~~m 437 (695)
-++...|.+..|.+.-++..+.....-|..+ ...+.+.|...|+.+.|..-|+..
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 3445555555555554443322111122222 234455566666666665555543
No 279
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.33 E-value=10 Score=32.15 Aligned_cols=134 Identities=12% Similarity=0.181 Sum_probs=65.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhH---HHHHHHHHhcCChHHH
Q 005474 248 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY---NNLLDTMGRAKRPWQV 324 (695)
Q Consensus 248 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a 324 (695)
.|.+++..++..+.... .+..-+|-+|--....-+-+-..++++.+ |--.|...+ ..++..|.+.|.
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNK---- 84 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT-----
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcc----
Confidence 46666666766666653 34444554444333333333334444333 222333222 122333333322
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 005474 325 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404 (695)
Q Consensus 325 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 404 (695)
+.......++...+.|+-++-.+++.++.+ +-+++....-.+..+|.+.|+..++.+++.+.-+.
T Consensus 85 --------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 85 --------------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred --------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 233444556666777777777777777664 23446666666777777777777777777777766
Q ss_pred CC
Q 005474 405 EN 406 (695)
Q Consensus 405 ~~ 406 (695)
|.
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 63
No 280
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.31 E-value=13 Score=33.32 Aligned_cols=131 Identities=14% Similarity=0.139 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005474 290 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369 (695)
Q Consensus 290 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (695)
.++++.+.+.++.|+...+..+++.+.+.|++.... .+...++-+|.......+-.+. +....+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 344555556667777777777777777777655433 3334444455444443332222 2223333333333332
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005474 370 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435 (695)
Q Consensus 370 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 435 (695)
=...+..++..+...|++-+|+++.+...... ..+ ...++.+-.+.++...-..+++
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~--~~~---~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD--SVP---ARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc--cCC---HHHHHHHHHHcCCHHHHHHHHH
Confidence 01134556667777778877777776653322 111 2334444445555443333333
No 281
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.01 E-value=5.1 Score=38.65 Aligned_cols=63 Identities=13% Similarity=0.007 Sum_probs=26.4
Q ss_pred HHHHHHHcCCHhHHHHHHHHhhh-CCCCCCH-HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh
Q 005474 452 LIQCYGKAQRTDDVVRALNRLPE-LGITPDD-RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG 514 (695)
Q Consensus 452 li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~-~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~ 514 (695)
|..++...|++++|..+|..+.+ .+-.|.. ..+--|..+....|+ ++|...++++.+-.|+..
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 44455555555555555554442 2212211 122222223333333 555555555555445433
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.83 E-value=3.8 Score=40.07 Aligned_cols=58 Identities=16% Similarity=0.219 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005474 379 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438 (695)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 438 (695)
..++..+...|+++.+.+.++++.... +-+...|..+|.+|.+.|+...|++.|+++.
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334444555555555555555554443 3445555555555555555555555554443
No 283
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.54 E-value=1.1 Score=29.79 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=9.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 005474 275 TLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
.+...|.+.|++++|+++|++..+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 284
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.47 E-value=24 Score=35.09 Aligned_cols=153 Identities=11% Similarity=-0.028 Sum_probs=103.6
Q ss_pred HcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHcCChHH
Q 005474 212 MNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNE---KWRIDPNAFSTLIKLYGTAGNFDG 288 (695)
Q Consensus 212 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~ 288 (695)
..|+..+|-..++++.+. .+-|...++..=++|.-.|+.+.-...++++... +++....+-..+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 467777777777777764 4567778888888899999999988888888754 222223333444455667899999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 005474 289 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS---PNWNTYASLLRAYGRARYGEDTLSVYRE 365 (695)
Q Consensus 289 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 365 (695)
|++.-++..+.+ +.|...-.++...+-..|++.++.++..+-...=-. .-..-|=-..-.|...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999998888765 246777778888888889999988876554321000 0011111222345566889999999985
Q ss_pred H
Q 005474 366 M 366 (695)
Q Consensus 366 m 366 (695)
-
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
No 285
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.91 E-value=38 Score=36.61 Aligned_cols=185 Identities=13% Similarity=0.036 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHH
Q 005474 374 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP--NLFVLTS 451 (695)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ 451 (695)
+..+|+.-+.--...|+.+...-+|+...-. |..-...|-..+.-....|+.+-|..++....+-.++- ....+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 3567777777778888888888888877542 23334455555555566688888888887776643322 2222222
Q ss_pred HHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHH-HHHHHHHHhcCCH-HHHH---HHHHHHHHcCCChh--H-HHHHHhhh
Q 005474 452 LIQCYGKAQRTDDVVRALNRLPELGITPDDRF-CGCLLNVMTQTPK-EELG---KLVECVEKSNSKLG--Y-VVKLLLEE 523 (695)
Q Consensus 452 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~ll~~~~~~~~-~~a~---~~~~~~~~~~p~~~--~-~~~~l~~~ 523 (695)
.+ .-..|+++.|..+++...+.- |+.+. -..-+....+.|. +.+. .++.......-+.+ . ..--+.+.
T Consensus 374 ~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 374 RF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred HH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 22 234578899999998887542 54332 1122233344555 4444 22222222111111 1 11112222
Q ss_pred hcchhhHHHHHHHHHHhc-cc-CccccchHHHHHHHHhcCCHH
Q 005474 524 QDIEGDFKKEATELFNSI-SK-DVKKAYCNCLIDLCVNLNLLE 564 (695)
Q Consensus 524 ~~~~g~~~~eA~~l~~~~-~~-~~~~~~~~~L~~~~~~~g~~~ 564 (695)
..+..+..+.|+.++..+ +. +++...|-.+++.+..++...
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcch
Confidence 222222557777777665 33 344557788888877777543
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.75 E-value=5.6 Score=36.32 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005474 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID--PNAFSTLIKLYGTAGNFDGCLNVYEEMK 297 (695)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 297 (695)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|......|++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345556666666666666666666655432222 2234555555566666666655555543
No 287
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.70 E-value=22 Score=33.72 Aligned_cols=201 Identities=15% Similarity=0.137 Sum_probs=94.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCh
Q 005474 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356 (695)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 356 (695)
..+|....++++|...+.+..+- ..-|...| -..+.++.|.-+.++|.+.. --+..|+--...|..+|..
T Consensus 38 AvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kls--Evvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKLS--EVVDLYEKASELYVECGSP 107 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhCCc
Confidence 34555666677766666555421 11111111 12233455555555555421 1234455566677777777
Q ss_pred HHHHHHHHHHHH--cCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005474 357 EDTLSVYREMKE--KGMQLSV--TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 432 (695)
Q Consensus 357 ~~A~~~~~~m~~--~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 432 (695)
+.|-..+++.-+ .+..|+. ..|.--+......++...|.+++ ..+-..+.+..++++|-.
T Consensus 108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~----------------gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY----------------GKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH----------------HHhhhHhhhhHHhhHHHH
Confidence 766666555432 1223322 12222222222223333333332 333344555566666554
Q ss_pred HHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHhhhCC--CCC-CHHHHHHHHHHHhcCCHHHHHHHH
Q 005474 433 MFNEMLE----AGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELG--ITP-DDRFCGCLLNVMTQTPKEELGKLV 503 (695)
Q Consensus 433 ~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p-d~~~~~~ll~~~~~~~~~~a~~~~ 503 (695)
.+.+-.. ..--++ -..|-..|-.|.-..++..|.+.++.--..+ ..+ |..+...||.+|.....+++.+++
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVL 250 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 4433221 000111 1234555556666678888888887632211 122 455777777776655545555544
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.55 E-value=5.2 Score=35.38 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccC-ccccchHHHHHHHH
Q 005474 497 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD-VKKAYCNCLIDLCV 558 (695)
Q Consensus 497 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~-~~~~~~~~L~~~~~ 558 (695)
++++.++..+.-+.|+...+--.-++.+..+| .+.+|..+++.+... +..+...+|+-.|.
T Consensus 27 ~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~-~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 27 DDAEALLDALRVLRPEFPELDLFDGWLHIVRG-DWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC-CHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 67777777777777776666555555555556 677777777776433 33344455554443
No 289
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.45 E-value=34 Score=35.60 Aligned_cols=423 Identities=11% Similarity=0.093 Sum_probs=221.5
Q ss_pred HHHhhCChHHHHHHHHHHHhcCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHH
Q 005474 138 ILNNMTNPDTAALALTYFTNKLKASKE----VILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS--CAR 211 (695)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~--~~~ 211 (695)
++..-++..+|..+|..+-+...-.|. -+.-+.+|++|... +.+.....+.+..+. .| ...|-.+.. .+-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 445555678888888887665432221 23356777777654 455555666555554 23 334444544 334
Q ss_pred HcCChhHHHHHHHhchhC--CCC------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCCHHHH
Q 005474 212 MNNLPNKAVEWFERMPSF--GCD------------PDALTYSSMIDAYGRAGNVEMAFGLYDRARNE----KWRIDPNAF 273 (695)
Q Consensus 212 ~~g~~~~A~~~~~~m~~~--g~~------------p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~~~~~~ 273 (695)
+.+.+++|++.+...... +.. +|-..-+..+..+...|.+.++..+++++... ...-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678899999988776543 222 12223355677888999999999998887654 334788889
Q ss_pred HHHHHHHHHc--------CC-------hHHHHHHHHHHHHc------CCCCCHHhHHHHHHHHHhc--CChHHHHHHHHH
Q 005474 274 STLIKLYGTA--------GN-------FDGCLNVYEEMKAI------GVKPNMITYNNLLDTMGRA--KRPWQVKTIYKE 330 (695)
Q Consensus 274 ~~li~~~~~~--------g~-------~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~ 330 (695)
+.++-++.+. .. ++.+.-+.++|... .+-|......+++....-. .+..--.+++..
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 8866666542 11 12222222233221 1223333333333322221 112222333333
Q ss_pred HHHCCCCCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 005474 331 MTDNGLSPNWN-TYASLLRAYGRARYGEDTLSVYREMKEKGMQ----LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405 (695)
Q Consensus 331 m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 405 (695)
-...-+.|+.. ....++..+.+ +.+++..+-+.+....+. -=..++..++....+.++..+|.+.+..+.-.
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l- 327 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL- 327 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-
Confidence 33444445532 23344444443 445555544444322111 02457888888999999999999998877653
Q ss_pred CCCCCHHHHH-------HHHHHHH----HcCCHHHHHHHHHHHHHCCCCCCH-HHHHH-HHHHHHHcCC-HhHHHHHHHH
Q 005474 406 NCQPDSWTFS-------SMITICS----CRGKVSEAEAMFNEMLEAGFEPNL-FVLTS-LIQCYGKAQR-TDDVVRALNR 471 (695)
Q Consensus 406 ~~~p~~~~~~-------~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~-li~~~~~~g~-~~~A~~~~~~ 471 (695)
.|+...-. .+.+..| ..-+...=..+|++.....+.... +.|-. -..-+.+.|. -+.|+.+++.
T Consensus 328 --dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 --DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred --CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 34433221 2223333 112233445566666654433211 11211 1234555666 7889999998
Q ss_pred hhhCCCCCCHH-----HHHHHHHHHhcCCH----HHHHHHHHHHHHc--CC---ChhHHHHHHhhh--hcchhhHHHHHH
Q 005474 472 LPELGITPDDR-----FCGCLLNVMTQTPK----EELGKLVECVEKS--NS---KLGYVVKLLLEE--QDIEGDFKKEAT 535 (695)
Q Consensus 472 m~~~g~~pd~~-----~~~~ll~~~~~~~~----~~a~~~~~~~~~~--~p---~~~~~~~~l~~~--~~~~g~~~~eA~ 535 (695)
.... .|.+. ++..+=.+|.+.=. .+..++.+-+.+. .| ......|.|+++ +...| .+.++.
T Consensus 406 il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqg-ey~kc~ 482 (549)
T PF07079_consen 406 ILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQG-EYHKCY 482 (549)
T ss_pred HHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcc-cHHHHH
Confidence 8743 34322 22222223322211 2222332323222 12 233444555433 12334 445544
Q ss_pred HHHHhc-ccCccccchHHHHHHHHhcCCHHHHHHHHHH
Q 005474 536 ELFNSI-SKDVKKAYCNCLIDLCVNLNLLENACKLLEL 572 (695)
Q Consensus 536 ~l~~~~-~~~~~~~~~~~L~~~~~~~g~~~~A~~~l~~ 572 (695)
-.-.-+ ...|.+.+|.-++-.+....++++|..+|..
T Consensus 483 ~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 483 LYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 332222 4457777888888888999999999999976
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.10 E-value=6.4 Score=35.96 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005474 271 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN--MITYNNLLDTMGRAKRPWQVKTIYKEMTD 333 (695)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 333 (695)
..+..+...|++.|+.++|++.|.++.+....+. ...+-.+|......+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567778888888888888888888877644333 34556667777777888777777666553
No 291
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.92 E-value=50 Score=36.87 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcccCccccchHHHHHHHHhcCCHHHHHHHH
Q 005474 530 FKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLL 570 (695)
Q Consensus 530 ~~~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~l 570 (695)
.+++|.++-.+- .+|+-++..+.+.|+..+|..++
T Consensus 636 ~lekA~eiC~q~------~~~~E~VYlLgrmGn~k~AL~lI 670 (846)
T KOG2066|consen 636 NLEKALEICSQK------NFYEELVYLLGRMGNAKEALKLI 670 (846)
T ss_pred CHHHHHHHHHhh------CcHHHHHHHHHhhcchHHHHHHH
Confidence 457777765432 37788888888888888877665
No 292
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.40 E-value=21 Score=31.95 Aligned_cols=140 Identities=14% Similarity=0.067 Sum_probs=88.2
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHhchhCCCCCCHH-HHHH
Q 005474 163 KEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTF-STLISCARMNNLPNKAVEWFERMPSFGCDPDAL-TYSS 240 (695)
Q Consensus 163 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ 240 (695)
.....|...++ +.+.+..++|+.-|..+.+.|..-=...- --........|+...|+..|+++-...-.|... -..-
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34445555554 45667788899999998887653211111 111124567788888888888886644334332 1111
Q ss_pred H--HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 005474 241 M--IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 303 (695)
Q Consensus 241 l--i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 303 (695)
| .-.+...|.++......+.+...+-+.-...-.+|.-+-.+.|++.+|.++|+.+......|
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1 12345668888888877777766655556666777777778888888888888877643333
No 293
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.93 E-value=6.2 Score=38.63 Aligned_cols=49 Identities=14% Similarity=0.185 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005474 390 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439 (695)
Q Consensus 390 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (695)
+.++++.++..=..-|+ -||..+++.+|+.+.+.+++.+|.++.-.|..
T Consensus 115 ~pq~~i~~l~npIqYGi-F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGI-FPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhcc-ccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 44455555555555554 55555566666666665555555555555443
No 294
>PRK09687 putative lyase; Provisional
Probab=86.90 E-value=34 Score=33.91 Aligned_cols=232 Identities=12% Similarity=0.062 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHcCCCCCHHhHH
Q 005474 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF----DGCLNVYEEMKAIGVKPNMITYN 309 (695)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~~~ 309 (695)
|..+....+.++...|. +++...+..+.. ..|...-...+.++.+.|+. +++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 44444444444444443 222222333332 23444444555555555542 3455555544322 23444444
Q ss_pred HHHHHHHhcCCh-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005474 310 NLLDTMGRAKRP-----WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 384 (695)
Q Consensus 310 ~li~~~~~~g~~-----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 384 (695)
..+.+++..+.. ..+...+..... .++..+-...+.++.+.++ +++...+-.+.+. +|...-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 444444433211 112222222222 1244444445555555554 3344444444432 233333333444
Q ss_pred HHhcC-CHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 005474 385 CADVG-YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 463 (695)
Q Consensus 385 ~~~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 463 (695)
+.+.+ ....+...+..+.. .+|..+-...+.++.+.|+ ..|...+-+..+.+ + .....+.+++..|..
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 44432 13344444444443 3455555555666666665 34444444444322 2 223455666666663
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 005474 464 DVVRALNRLPELGITPDDRFCGCLLNVM 491 (695)
Q Consensus 464 ~A~~~~~~m~~~g~~pd~~~~~~ll~~~ 491 (695)
+|+..+.++.+. .||..+-...+.+|
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 566666666542 33544444444433
No 295
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.68 E-value=23 Score=31.70 Aligned_cols=122 Identities=16% Similarity=0.050 Sum_probs=83.6
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHHcCChhHHH
Q 005474 144 NPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS---CARMNNLPNKAV 220 (695)
Q Consensus 144 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~---~~~~~g~~~~A~ 220 (695)
+.++|+..|..+++.+--.-.+..---+.......|+...|...|+++-.....|-..-=..-++ .+...|.++...
T Consensus 73 k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~ 152 (221)
T COG4649 73 KTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVS 152 (221)
T ss_pred CchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHH
Confidence 48899999999987652111222233344556788999999999999987644443331112222 456788898888
Q ss_pred HHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 005474 221 EWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265 (695)
Q Consensus 221 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 265 (695)
...+-+-..+-+--...-..|.-+-.+.|++..|.+.|+.+....
T Consensus 153 srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 153 SRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 888777655544445556678788889999999999999988643
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.95 E-value=1.5 Score=26.97 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=24.6
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 549 YCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 549 ~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
+|..++.++...|++++|++.++++++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 56788999999999999999999998754
No 297
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.28 E-value=2.1 Score=27.07 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005474 167 LYNVTMKVFRKCRDLDKAERLFDDML 192 (695)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~l~~~m~ 192 (695)
+|+.|..+|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36667777777777777777777743
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.47 E-value=29 Score=30.81 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=9.8
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 005474 280 YGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~ 298 (695)
+.+.|++++|+.+|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3445555555555555444
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.31 E-value=2 Score=26.50 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=25.1
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 549 YCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 549 ~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
+|..++.++...|++++|+..++++++..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 57789999999999999999999998754
No 300
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.24 E-value=44 Score=32.72 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhh-----hCCCCCCHHH
Q 005474 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLP-----ELGITPDDRF 483 (695)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~pd~~~ 483 (695)
+.....|..+|.+.+|.++.++.+.. .| +...|-.++..++..|+--.|.+-++++. +.|+..|...
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltl--dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTL--DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 44556677788888888877777763 33 66667777777887787766666666553 3466555443
No 301
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.16 E-value=61 Score=34.36 Aligned_cols=181 Identities=11% Similarity=0.141 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005474 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 346 (695)
Q Consensus 267 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 346 (695)
..|....-+++..+..+-.+.-...+..+|...| -+...|..++..|... ..++-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4455666667777777777777777777777654 2566677777777766 556666777766665432 33434444
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHH
Q 005474 347 LRAYGRARYGEDTLSVYREMKEKGMQL-----SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 421 (695)
Q Consensus 347 i~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 421 (695)
...|-+ ++...+..+|.++..+-++- -...|.-|... -..+.+....+...+........-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444444 66677777777665442210 01133333221 12345666666665554332233444455555666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005474 422 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455 (695)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 455 (695)
....++++|.+++..+.++. ..|...-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 66777777777777776643 2244444444443
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.96 E-value=1.9 Score=27.99 Aligned_cols=27 Identities=30% Similarity=0.201 Sum_probs=23.3
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005474 549 YCNCLIDLCVNLNLLENACKLLELGLT 575 (695)
Q Consensus 549 ~~~~L~~~~~~~g~~~~A~~~l~~~~~ 575 (695)
+++.|+.+|...|++++|..+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 578899999999999999999999874
No 303
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.19 E-value=49 Score=32.50 Aligned_cols=138 Identities=15% Similarity=0.192 Sum_probs=87.6
Q ss_pred cCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHH-cCC-hhHHHHHHHhch-hCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005474 178 CRDLDKAERLFDDMLD-RGVKPDNVTFSTLISCARM-NNL-PNKAVEWFERMP-SFGCDPDALTYSSMIDAYGRAGNVEM 253 (695)
Q Consensus 178 ~g~~~~A~~l~~~m~~-~g~~p~~~~~~~li~~~~~-~g~-~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~ 253 (695)
+..+.+|+++|+.... ..+--|..+...+++.... .+. ...-.++.+-+. ..|-.++..+...+|..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 4455677777773222 2244566666667765554 222 222223333333 23456777788888899999999999
Q ss_pred HHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-----HHHcCCCCCHHhHHHHHHHH
Q 005474 254 AFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE-----MKAIGVKPNMITYNNLLDTM 315 (695)
Q Consensus 254 A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p~~~~~~~li~~~ 315 (695)
-.++++..... +..-|...|..+|+.....|+..-...+.++ +++.++..+...-..+-..+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 88888887755 5567888899999999999988777666654 34455655555554444433
No 304
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=82.00 E-value=54 Score=32.13 Aligned_cols=26 Identities=23% Similarity=0.005 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005474 374 SVTLYNTLLAMCADVGYTDEAFEIFE 399 (695)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~ 399 (695)
|......+...|.+.|++.+|+..|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 45566667777777777777776654
No 305
>PRK09687 putative lyase; Provisional
Probab=81.86 E-value=57 Score=32.35 Aligned_cols=222 Identities=11% Similarity=0.044 Sum_probs=132.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCCCHHH
Q 005474 267 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP----WQVKTIYKEMTDNGLSPNWNT 342 (695)
Q Consensus 267 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~~~~~ 342 (695)
.+|..+....+..+...|. +++...+..+.. .+|...-...+.+++..|+. .++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 4567777777777777775 344444444544 24666666777778887764 4567777766433 356666
Q ss_pred HHHHHHHHHhCCCh-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHH
Q 005474 343 YASLLRAYGRARYG-----EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 417 (695)
Q Consensus 343 ~~~li~~~~~~g~~-----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 417 (695)
-...+.++...+.. ..+...+...... ++..+-...+.++.+.|+ ++++..+..+.+. +|...-...
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR~~A 179 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVRNWA 179 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHHHHH
Confidence 66666666555421 2233333333222 255555567777777776 4566666666653 344455555
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH
Q 005474 418 ITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 496 (695)
Q Consensus 418 i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~ 496 (695)
+.++.+.+ +-..+...+..+.. .+|..+-...+.++.+.|+ ..|+..+-+..+.+. .....+.++...|.
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~ 250 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCC
Confidence 55555543 24456666666664 3677777788888888887 466666666655432 23456666777777
Q ss_pred HHHHHHHHHHHHcCC
Q 005474 497 EELGKLVECVEKSNS 511 (695)
Q Consensus 497 ~~a~~~~~~~~~~~p 511 (695)
.++...+..+...+|
T Consensus 251 ~~a~p~L~~l~~~~~ 265 (280)
T PRK09687 251 KTLLPVLDTLLYKFD 265 (280)
T ss_pred HhHHHHHHHHHhhCC
Confidence 777777777666555
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.81 E-value=14 Score=32.24 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccCc-cccchHHHHHH-HHhcCC
Q 005474 497 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV-KKAYCNCLIDL-CVNLNL 562 (695)
Q Consensus 497 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~~-~~~~~~~L~~~-~~~~g~ 562 (695)
++++.+++.+.-+.|+...+--+-|+.+..+| .++||..+++.+.... ..+...+|.-. +.-.||
T Consensus 27 ~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg-~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 27 YDAQAMLDALRVLRPNLKELDMFDGWLLIARG-NYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHHHHHhCCCccccchhHHHHHHHcC-CHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 77777777777777777766656666666667 7788888888775554 33344444433 344455
No 307
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.03 E-value=45 Score=30.62 Aligned_cols=93 Identities=14% Similarity=0.032 Sum_probs=60.4
Q ss_pred HHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHH
Q 005474 453 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKK 532 (695)
Q Consensus 453 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 532 (695)
...+...|++++|..-++..... |.+..+..++. --|++.+...| ..|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~----------------------------lRLArvq~q~~-k~D 143 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA----------------------------LRLARVQLQQK-KAD 143 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH----------------------------HHHHHHHHHhh-hHH
Confidence 45667778888888887765532 33333433332 22344445556 678
Q ss_pred HHHHHHHhcccCc-cccchHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 533 EATELFNSISKDV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 533 eA~~l~~~~~~~~-~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
+|...++....+. .......-+|++...|+.++|+.-++++++..
T Consensus 144 ~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 144 AALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 8888777654332 11233556789999999999999999998875
No 308
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.74 E-value=12 Score=33.74 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHhhhhcchh----------hHHHHHHHHHHhc-ccCccccchHHHHHHH
Q 005474 497 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----------DFKKEATELFNSI-SKDVKKAYCNCLIDLC 557 (695)
Q Consensus 497 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----------~~~~eA~~l~~~~-~~~~~~~~~~~L~~~~ 557 (695)
++|..-|++++.++|+...++..+|.++...+ ..+++|.+.|++. ..+|+...|+--+..+
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 45555667777899998888888887776543 1234455555444 4567766665444433
No 309
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=80.66 E-value=2.6 Score=26.29 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=10.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHH
Q 005474 268 IDPNAFSTLIKLYGTAGNFDGC 289 (695)
Q Consensus 268 ~~~~~~~~li~~~~~~g~~~~A 289 (695)
-+..+|+.+...|...|++++|
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhh
Confidence 3444555555555555555544
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.06 E-value=14 Score=29.37 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005474 320 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368 (695)
Q Consensus 320 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 368 (695)
+..++.+-++.+....+.|+.....+.+.+|.+.+++..|.++|+-++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3345555566666666666666666666666666666666666666553
No 311
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.94 E-value=1.2e+02 Score=34.75 Aligned_cols=288 Identities=14% Similarity=0.079 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHcCCC-------CCHHHHHHHHHHHHHcC----ChhHHHHHHH----hchhCCCCCCHHHHHHHHHHHH
Q 005474 182 DKAERLFDDMLDRGVK-------PDNVTFSTLISCARMNN----LPNKAVEWFE----RMPSFGCDPDALTYSSMIDAYG 246 (695)
Q Consensus 182 ~~A~~l~~~m~~~g~~-------p~~~~~~~li~~~~~~g----~~~~A~~~~~----~m~~~g~~p~~~~~~~li~~~~ 246 (695)
+....+++++...|+. +.-+-|..++.-+.+.. ......++.. ...+.|. | .--|....
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~-~-----~eAI~hAl 371 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGL-P-----SEAIDHAL 371 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCC-h-----HHHHHHHH
Confidence 3345677777777743 23445666665443321 1122222221 1222332 1 12345556
Q ss_pred hcCCHHHHHHHHHHHhh----C-----------CCCCCHHHHH----HHH--HHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 005474 247 RAGNVEMAFGLYDRARN----E-----------KWRIDPNAFS----TLI--KLYGTAGNFDGCLNVYEEMKAIGVKPNM 305 (695)
Q Consensus 247 ~~g~~~~A~~~~~~~~~----~-----------g~~~~~~~~~----~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 305 (695)
+.|+++.|-.++++... . ++ |+....+ .+. .......++++|..+..+....=..|+.
T Consensus 372 aA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~l-P~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~ 450 (894)
T COG2909 372 AAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKAL-PAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMH 450 (894)
T ss_pred hCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhC-CHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcc
Confidence 77888888777766511 1 11 2222111 122 2334578899999998887543222221
Q ss_pred -------HhHHHHHH-HHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 005474 306 -------ITYNNLLD-TMGRAKRPWQVKTIYKEMTDN----GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 373 (695)
Q Consensus 306 -------~~~~~li~-~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 373 (695)
..++.+-. .....|++++|.++-+..... -..+....+..+..+..-.|++++|..+..+..+....-
T Consensus 451 ~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 451 SRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 23444322 234568889988888776642 233456667777888888899999998888766543333
Q ss_pred CHHHHHHHH-----HHHHhcCC--HHHHHHHHHHhHhC-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----H
Q 005474 374 SVTLYNTLL-----AMCADVGY--TDEAFEIFEDMKSS-----ENCQPDSWTFSSMITICSCRGKVSEAEAMFNE----M 437 (695)
Q Consensus 374 ~~~~~~~li-----~~~~~~g~--~~~A~~~~~~m~~~-----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----m 437 (695)
+...+.... ..+...|. .++.+..|...... ....+-..++..+..++.+ ++.+..-... .
T Consensus 531 ~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~ 607 (894)
T COG2909 531 DVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVG 607 (894)
T ss_pred ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhh
Confidence 444333222 34556673 33333334433322 1101223445555555555 3333322222 2
Q ss_pred HHCCCCCCHHHH--HHHHHHHHHcCCHhHHHHHHHHhhhCCCCC
Q 005474 438 LEAGFEPNLFVL--TSLIQCYGKAQRTDDVVRALNRLPELGITP 479 (695)
Q Consensus 438 ~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 479 (695)
......|-...+ ..|+..+...|+.++|...++++......+
T Consensus 608 ~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 608 SVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred hhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 222222222222 366778888999999999999987543333
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.91 E-value=4.9 Score=24.65 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHhhh
Q 005474 447 FVLTSLIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 447 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
.+|..+..+|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3556666666666666666666666653
No 313
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.73 E-value=3.9 Score=25.09 Aligned_cols=29 Identities=24% Similarity=0.174 Sum_probs=25.2
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 549 YCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 549 ~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
+|..++..+...|++++|.+.|+++++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56788899999999999999999998653
No 314
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.55 E-value=10 Score=30.49 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005474 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369 (695)
Q Consensus 323 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (695)
+..+-++.+....+.|+..+..+.+.+|.+.+++..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555566666666667777777777777777777777777666543
No 315
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.15 E-value=15 Score=29.26 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHH
Q 005474 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418 (695)
Q Consensus 356 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 418 (695)
.=++.+-++.+....+.|+.....+.+++|.+.+++..|.++|+-++... ..+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~--~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC--GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cCchhhHHHHH
Confidence 33556666666777777888888888888888888888888888776432 22444555554
No 316
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.06 E-value=73 Score=31.32 Aligned_cols=135 Identities=7% Similarity=0.100 Sum_probs=82.3
Q ss_pred hhHHHHHHHhchh-CCCCCCHHHHHHHHHHHHh-cCC-HHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005474 216 PNKAVEWFERMPS-FGCDPDALTYSSMIDAYGR-AGN-VEMAFGLYDRARN-EKWRIDPNAFSTLIKLYGTAGNFDGCLN 291 (695)
Q Consensus 216 ~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~-~g~-~~~A~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~ 291 (695)
+.+|+++|+...- ..+--|..+...+++.... .+. ...-.++.+-+.. .+-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4466666663221 2244566666666666655 221 2222233333332 2346777778888888888888888888
Q ss_pred HHHHHHHc-CCCCCHHhHHHHHHHHHhcCChHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHH
Q 005474 292 VYEEMKAI-GVKPNMITYNNLLDTMGRAKRPWQVKTIYKE-----MTDNGLSPNWNTYASLLRAY 350 (695)
Q Consensus 292 ~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~~~~~~~~~~~~li~~~ 350 (695)
+++..... +..-|...|..+|......|+..-..++.++ +.+.++..+...-..+-..+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 88776654 4555778888888888888888777777664 23455665555554444443
No 317
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.91 E-value=8 Score=37.91 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=24.4
Q ss_pred hhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005474 216 PNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRAR 262 (695)
Q Consensus 216 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 262 (695)
+++++.++..=++.|+-||..+++.+|+.+.+.+++.+|.++.-.|.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555444443
No 318
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.71 E-value=65 Score=30.53 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=8.9
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 005474 423 CRGKVSEAEAMFNEMLEA 440 (695)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~ 440 (695)
..+++.+|.++|++....
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
No 319
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=77.67 E-value=1.4e+02 Score=34.25 Aligned_cols=225 Identities=11% Similarity=0.006 Sum_probs=122.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHH-HHHcCChHHHHHHHHHHHHc----CCCCCHHhHHHHHH
Q 005474 246 GRAGNVEMAFGLYDRARNEKWRIDP-------NAFSTLIKL-YGTAGNFDGCLNVYEEMKAI----GVKPNMITYNNLLD 313 (695)
Q Consensus 246 ~~~g~~~~A~~~~~~~~~~g~~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~ 313 (695)
....++.+|..+..++...--.|+. ..|+++-.. ....|++++|.++-+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3457899999988887643212221 234444332 23468889999988876543 22335666777788
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHhCCC--hHHHHHHHHHHHHcC---CC---CCHHHHHH
Q 005474 314 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL-----RAYGRARY--GEDTLSVYREMKEKG---MQ---LSVTLYNT 380 (695)
Q Consensus 314 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li-----~~~~~~g~--~~~A~~~~~~m~~~~---~~---~~~~~~~~ 380 (695)
+..-.|++++|..+..+..+..-.-+...+.... ..+...|+ ..+.+..|....... .. +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999999888776543233444433322 23455563 333344444433221 11 11234444
Q ss_pred HHHHHHhc-CCHHHHHHHHHHhHhCCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHH
Q 005474 381 LLAMCADV-GYTDEAFEIFEDMKSSENCQPDSWT--FSSMITICSCRGKVSEAEAMFNEMLEAGFEP----NLFVLTSLI 453 (695)
Q Consensus 381 li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~li 453 (695)
++.++.+. +...++..-++.-..... .|-... +..|+..+...|+.++|...++++......+ +..+-...+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~-~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTP-QPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhccc-chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 55555442 112222222222222111 111111 2366777888999999999999987633222 333323333
Q ss_pred H--HHHHcCCHhHHHHHHHH
Q 005474 454 Q--CYGKAQRTDDVVRALNR 471 (695)
Q Consensus 454 ~--~~~~~g~~~~A~~~~~~ 471 (695)
. .....|+.+.|...+.+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 3 23456888777777665
No 320
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.37 E-value=1e+02 Score=32.74 Aligned_cols=178 Identities=11% Similarity=0.165 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 005474 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 313 (695)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 313 (695)
|....-+++..+.......-.+.+..+|...| -+...|-.++.+|..+ .-+.-..+++++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44444555555555555555555555555543 3455555666666655 334555566655554332 3333333333
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhCCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh
Q 005474 314 TMGRAKRPWQVKTIYKEMTDNGLSP-----NWNTYASLLRAYGRARYGEDTLSVYREMKE-KGMQLSVTLYNTLLAMCAD 387 (695)
Q Consensus 314 ~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~ 387 (695)
.|-+ ++...+...|.....+-++. -...|.-++... ..+.+....+..++.. .|...-.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 55555555555544321110 011233222211 2334444444444432 2333334444445555666
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHH
Q 005474 388 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 420 (695)
Q Consensus 388 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 420 (695)
..++++|++++..+.+.. ..|...-..++..
T Consensus 218 ~eN~~eai~Ilk~il~~d--~k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHD--EKDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhc--chhhhHHHHHHHH
Confidence 666777777776666554 3455444444443
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.66 E-value=39 Score=36.49 Aligned_cols=163 Identities=17% Similarity=0.167 Sum_probs=110.0
Q ss_pred CHhHHHHHHHHH-----HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHH
Q 005474 164 EVILYNVTMKVF-----RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTY 238 (695)
Q Consensus 164 ~~~~~~~li~~~-----~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 238 (695)
+++.|..++..+ .-.|+++.|..++..+.+ ..-+.+..-+.+.|-.++|+++- +|..-
T Consensus 580 nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~- 642 (794)
T KOG0276|consen 580 NVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELS---------TDPDQ- 642 (794)
T ss_pred ceEeEeeehHHHHHHHHhhhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcC---------CChhh-
Confidence 666666665554 335788888776655432 23345556666777777777542 33221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 005474 239 SSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 318 (695)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 318 (695)
-.....+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|....+ |..|+-.+...
T Consensus 643 --rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~ 705 (794)
T KOG0276|consen 643 --RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSS 705 (794)
T ss_pred --hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhc
Confidence 1234457789999888776643 567899999999999999999999987654 45567777778
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 005474 319 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 366 (695)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 366 (695)
|+-+....+-....+.|.. | . ...+|...|+++++.+++..-
T Consensus 706 g~~~~l~~la~~~~~~g~~-N-~----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 706 GNAEGLAVLASLAKKQGKN-N-L----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred CChhHHHHHHHHHHhhccc-c-h----HHHHHHHcCCHHHHHHHHHhc
Confidence 8887777777777776643 2 2 233566789999988877654
No 322
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.97 E-value=42 Score=30.87 Aligned_cols=98 Identities=14% Similarity=0.092 Sum_probs=58.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhcCC
Q 005474 421 CSCRGKVSEAEAMFNEMLEAGFEP----NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTP 495 (695)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~~~~~~ 495 (695)
+.+.|++++|..-|.+.++.-..- ..+.|..-..++.+.+.++.|+.--.+.++.+ |... ....-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhh
Confidence 456777777777777776632111 12344444557778888888888777777553 3211 1111123555555
Q ss_pred H-HHHHHHHHHHHHcCCChhHHHHHH
Q 005474 496 K-EELGKLVECVEKSNSKLGYVVKLL 520 (695)
Q Consensus 496 ~-~~a~~~~~~~~~~~p~~~~~~~~l 520 (695)
. ++|..-++++.+.+|....+....
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 5 888888888888888655443333
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.57 E-value=63 Score=35.01 Aligned_cols=133 Identities=19% Similarity=0.167 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 005474 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245 (695)
Q Consensus 166 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 245 (695)
..-+.++..+.++|-.++|+++-.. || .-| ....+.|+++.|.++..+.. +..-|..|.++.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s~D-------~d-~rF----elal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELSTD-------PD-QRF----ELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcCCC-------hh-hhh----hhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 3457788888888888888776311 11 112 33456788888888765542 567789999999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHH
Q 005474 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325 (695)
Q Consensus 246 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 325 (695)
...|++..|.+.|.+..+ |..|+-.+...|+.+....+-....+.|.. |. -.-+|...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N~-----AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-NL-----AFLAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-ch-----HHHHHHHcCCHHHHH
Confidence 999999999988888765 456777777788877777777777766632 22 234566788888888
Q ss_pred HHHHHH
Q 005474 326 TIYKEM 331 (695)
Q Consensus 326 ~~~~~m 331 (695)
+++..-
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 777554
No 324
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.54 E-value=86 Score=30.81 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 005474 377 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE-----AGFEPNLFV 448 (695)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 448 (695)
+++.....|..+|.+.+|.++.+...... +.+...+-.|+..+...|+--.|.+-++++.+ .|+..+-..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 34456678899999999999999998876 67888899999999999998888887777754 455554433
No 325
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.50 E-value=22 Score=37.04 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=76.6
Q ss_pred HhCCChHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005474 351 GRARYGEDT-LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 429 (695)
Q Consensus 351 ~~~g~~~~A-~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 429 (695)
...|++-.| .++++.+....-.|+.+...+.| ....|+++.+...+...... +-....+..++++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHH
Confidence 345666555 44555555554455555444443 45678888888888776543 24556677788888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhh
Q 005474 430 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 430 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
|..+-..|....++ +....+.....-...|-+|++...+++...
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 88888888776554 333333333344556778888888887764
No 326
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=75.32 E-value=72 Score=29.85 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005474 235 ALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299 (695)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 299 (695)
+.+||.|.--+...|+++.|.+.|+...+....-+-...|.=|..| -.|++.-|.+=|...-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhc
Confidence 4567777777777777777777777777654222222333323222 246777776666555544
No 327
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.28 E-value=11 Score=37.45 Aligned_cols=52 Identities=10% Similarity=0.009 Sum_probs=30.2
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005474 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 437 (695)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 437 (695)
-|.+.|.+++|++.|..-.... +-|.+++..-..+|.+...+..|+.--...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 4666666666666666655432 236666666666666666665555444433
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.26 E-value=31 Score=31.87 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=31.4
Q ss_pred HHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHhHH
Q 005474 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA---GFEPNLFVLTSLIQCYGKAQRTDDV 465 (695)
Q Consensus 393 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A 465 (695)
+|.+.|-.+...+. .-++.....|...|. ..+.+++.+++.+..+. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~-l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPE-LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCC-CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444442 233333333333332 34445555555444431 1134555555555555555555554
No 329
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.08 E-value=19 Score=28.97 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 429 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
+..+-++.+....+.|+..+..+.+.+|.+.+++.-|+++|+-..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555555556666777777777777777777777777777665
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.99 E-value=7.4 Score=25.02 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005474 166 ILYNVTMKVFRKCRDLDKAERLFDDMLD 193 (695)
Q Consensus 166 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 193 (695)
.+++.+...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777776653
No 331
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=74.73 E-value=7.6 Score=23.61 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhh
Q 005474 448 VLTSLIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
.|..+...|.+.|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455556666666666666666666553
No 332
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.18 E-value=4.4 Score=23.33 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=18.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHH
Q 005474 550 CNCLIDLCVNLNLLENACKLLE 571 (695)
Q Consensus 550 ~~~L~~~~~~~g~~~~A~~~l~ 571 (695)
.-.|+.++...|+.++|+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3467888999999999988875
No 333
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=72.13 E-value=1.5 Score=38.41 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=26.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005474 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 294 (695)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 294 (695)
|..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444445555555555555544433445555555555555555455554444
No 334
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.85 E-value=1e+02 Score=30.09 Aligned_cols=95 Identities=14% Similarity=0.170 Sum_probs=43.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHH----HHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHhH---hCCCCCCCHHHHHH
Q 005474 345 SLLRAYGRARYGEDTLSVYREM----KEKGMQLSVTLYNTL-LAMCADVGYTDEAFEIFEDMK---SSENCQPDSWTFSS 416 (695)
Q Consensus 345 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~---~~~~~~p~~~~~~~ 416 (695)
-+|..+.+.|.+.+|+.+.+.+ ++..-+++..+...+ -.+|-...++.++..-+...+ ..-.|+|-...-.-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 4667777888888877765543 333444443332211 123333344433333332222 11224444444444
Q ss_pred HHHHH--HHcCCHHHHHHHHHHHHH
Q 005474 417 MITIC--SCRGKVSEAEAMFNEMLE 439 (695)
Q Consensus 417 li~~~--~~~g~~~~A~~~~~~m~~ 439 (695)
|+.+. |...++..|..+|-+..+
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHh
Confidence 44443 233445555555555444
No 335
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.75 E-value=1.7 Score=38.06 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=24.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 005474 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 364 (695)
Q Consensus 312 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 364 (695)
+..+.+.+.+.....+++.+...+...+....+.++..|++.+..+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444444555555555444333344455555555555544444444443
No 336
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.35 E-value=71 Score=27.99 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=9.9
Q ss_pred HHHcCChHHHHHHHHHHHHc
Q 005474 280 YGTAGNFDGCLNVYEEMKAI 299 (695)
Q Consensus 280 ~~~~g~~~~A~~~~~~m~~~ 299 (695)
+...|++++|..+|++..+.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 34445555555555555443
No 337
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=70.98 E-value=1.1e+02 Score=30.06 Aligned_cols=118 Identities=9% Similarity=0.019 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHh----CCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---
Q 005474 375 VTLYNTLLAMCADVGYTDEAFEIFEDMKS----SENCQPDSWTFSS-MITICSCRGKVSEAEAMFNEMLEAGFEPNL--- 446 (695)
Q Consensus 375 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--- 446 (695)
...+..+..-|++.++.+.+.++..+..+ .|. +-|+....+ |.-.|....-+++-++..+.|.+.|...+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~-KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGL-KIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccc-chhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 34455566667777777666666554432 232 333322111 111223333355666666666666654432
Q ss_pred -HHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC
Q 005474 447 -FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 495 (695)
Q Consensus 447 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~ 495 (695)
.+|..+.. ....++.+|-.+|-+....--......|.....-..-+|
T Consensus 194 yK~Y~Gi~~--m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 194 YKVYKGIFK--MMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHHHHHHH--HHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhh
Confidence 22222221 122345555555544432211222334555444444444
No 338
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=70.70 E-value=1.3e+02 Score=30.75 Aligned_cols=65 Identities=11% Similarity=0.054 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 005474 339 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL---SVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403 (695)
Q Consensus 339 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 403 (695)
...++..+...+.+.|.++.|...+..+...+... +......-++..-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677788888899999999999888887754221 233333445666778888899888888776
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.57 E-value=7.9 Score=25.85 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 552 CLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 552 ~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
.|..+|...|+.+.|++++++.+..+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46788999999999999999988644
No 340
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.39 E-value=2.1e+02 Score=32.75 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005474 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 436 (695)
Q Consensus 380 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 436 (695)
+..+.+...|+.++...+-.-|.. |..++.-+.+.+.+++|++++..
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l~~d----------~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANLIKD----------YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555544444332 34555666666666666666544
No 341
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.21 E-value=2e+02 Score=33.37 Aligned_cols=39 Identities=10% Similarity=-0.063 Sum_probs=24.1
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 005474 279 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317 (695)
Q Consensus 279 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 317 (695)
.|+.....+-+..+++.+....-..+..-.+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 355556666777777777665444556666666666554
No 342
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=67.97 E-value=2.1e+02 Score=32.21 Aligned_cols=89 Identities=9% Similarity=-0.002 Sum_probs=40.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh---
Q 005474 312 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG-MQLSVTLYNTLLAMCAD--- 387 (695)
Q Consensus 312 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~--- 387 (695)
...+.-.|+++.|.+.+-. ..+...|.+.+...+..|.-.+-.+... ..+.... -.+....+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3455667888888888766 2223345666655555443222111111 2222111 01112556777877776
Q ss_pred cCCHHHHHHHHHHhHhCC
Q 005474 388 VGYTDEAFEIFEDMKSSE 405 (695)
Q Consensus 388 ~g~~~~A~~~~~~m~~~~ 405 (695)
..+..+|.++|-.+....
T Consensus 340 ~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFK 357 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 357888888888777644
No 343
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=67.76 E-value=3.7e+02 Score=34.84 Aligned_cols=150 Identities=11% Similarity=0.054 Sum_probs=79.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----hhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 005474 240 SMIDAYGRAGNVEMAFGLYDRA----RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 315 (695)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 315 (695)
++..+-.+++.+..|...+++- .+. .....-|..+...|+..+++|+...+...-.. .|+ ...-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHH
Confidence 3444555677777777777773 211 12233444555578888888777766664221 122 12233445
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHH
Q 005474 316 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT-LLAMCADVGYTDEA 394 (695)
Q Consensus 316 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~A 394 (695)
...|++..|...|+.+.+.+. +...+++-++..-...|.++...-..+...... .+....++. =+.+--+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhh
Confidence 667788888888888877542 225556655555555666666655444443321 112222222 22333455666665
Q ss_pred HHHHH
Q 005474 395 FEIFE 399 (695)
Q Consensus 395 ~~~~~ 399 (695)
...+.
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 55544
No 344
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.37 E-value=66 Score=31.39 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=37.6
Q ss_pred HHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----
Q 005474 207 ISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT---- 282 (695)
Q Consensus 207 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---- 282 (695)
|.+++..|++.+++.+.-+.-+.--+--......-|-.|.+.+....+.++-..-....-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4566666666666554433322111112223333344455555555555555444433222223334444444433
Q ss_pred -cCChHHHHHHH
Q 005474 283 -AGNFDGCLNVY 293 (695)
Q Consensus 283 -~g~~~~A~~~~ 293 (695)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 34444444443
No 345
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.80 E-value=19 Score=32.79 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=47.4
Q ss_pred eeccccCChHHHHHHHHHHHHHHHHHHhcCCCCCCeeEEEeeccccccc-chhHHHHHHHHhhh--cCCCCccCCC
Q 005474 591 SLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYS-DKGLASVFESHLKE--LNAPFHDSPD 663 (695)
Q Consensus 591 ~~~l~~~s~G~~~~a~~~w~~~~~~~~~~g~~~p~~~~i~~g~~~~~~~-~~~~~~~i~~~l~~--~~~pf~~~~~ 663 (695)
.+|||+|..-.|..+|..++..-++. .=.++.|++|.|. |.. .+.|+..|-.-|.. ...-|+.++.
T Consensus 98 ~LDLHG~tq~eAr~~L~~Fi~~a~~~------~~rcv~VihGkG~-s~g~~~vLK~~Vp~WL~qhp~V~a~~~a~~ 166 (184)
T COG2840 98 RLDLHGLTQEEARQELGAFIARARAE------GLRCVLVIHGKGR-SKGSKPVLKSQVPRWLTQHPDVLAFHQAPR 166 (184)
T ss_pred eeeccCCCHHHHHHHHHHHHHHHHHh------CCcEEEEEeCCCc-CCCCchhHHHHHHHHHHhChHHHhhcccch
Confidence 46999999999999999888776653 2356799999998 554 35677777666554 4444555554
No 346
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.68 E-value=47 Score=30.13 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC-----------HhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 005474 428 SEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQR-----------TDDVVRALNRLPELGITPDDRFCGCLLNVM 491 (695)
Q Consensus 428 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~ 491 (695)
++|..-|++.+. +.|+ ..++..+..+|...+. +++|...|++..+ .+|+..+|+.-+..+
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 344444444444 4454 3566666666654432 3334444444432 255555555555444
No 347
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.40 E-value=37 Score=31.74 Aligned_cols=73 Identities=8% Similarity=-0.039 Sum_probs=34.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Q 005474 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLRAY 350 (695)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~ 350 (695)
++.+.+.+..++|+...++-++... -|..+-..++..||-.|++++|..-++..-... ..+...+|..+|.+-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 4444455555555555554444321 133444445555555566555555554443321 223345555555543
No 348
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=65.08 E-value=2.1e+02 Score=31.15 Aligned_cols=359 Identities=9% Similarity=0.051 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHhcCCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcCChhHHHHHH
Q 005474 146 DTAALALTYFTNKLKASKEVI-LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLIS-CARMNNLPNKAVEWF 223 (695)
Q Consensus 146 ~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~ 223 (695)
+.+..++..+... -|... -|......=.+.|..+.+.++|++-+. |++.....|...+. +....|+.+...+.|
T Consensus 62 ~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 62 DALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 4455555555543 24444 355555555778888999999988775 36666777776666 334567777777788
Q ss_pred HhchhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH---c------CChHHHHHH
Q 005474 224 ERMPSF-GCD-PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT---A------GNFDGCLNV 292 (695)
Q Consensus 224 ~~m~~~-g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---~------g~~~~A~~~ 292 (695)
+..... |.. .....|...|.--...+++.....+|+++++. ...-|+..-.-|.+ . ...+++.++
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l 213 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQL 213 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHH
Confidence 776652 322 24556777777777788888888888888863 22222222222221 1 223333332
Q ss_pred HHHHHHc---C-CCCCHHhH------------------HHHH-------HHHHhcCChHHHHHHHHHHHHC---CCC---
Q 005474 293 YEEMKAI---G-VKPNMITY------------------NNLL-------DTMGRAKRPWQVKTIYKEMTDN---GLS--- 337 (695)
Q Consensus 293 ~~~m~~~---g-~~p~~~~~------------------~~li-------~~~~~~g~~~~a~~~~~~m~~~---~~~--- 337 (695)
-...... + .......+ +.+- .++.......+....|++-.+. .++
T Consensus 214 ~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~ 293 (577)
T KOG1258|consen 214 RSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLD 293 (577)
T ss_pred hhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCccc
Confidence 2222210 0 00000011 1110 1111111122222222222221 111
Q ss_pred -CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHH
Q 005474 338 -PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 416 (695)
Q Consensus 338 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 416 (695)
++..+|..-+..-.+.|+.+.+.-+|+...-. +..=...|--.+.-....|+.+-|..++....+-. .++......
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~--~k~~~~i~L 370 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIH--VKKTPIIHL 370 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc--CCCCcHHHH
Confidence 24567777777778888888888888876542 11112333334444455588888888777665543 222222222
Q ss_pred HHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHhHHH---HHHHHhhhCCCCCCH--HHHHHHHH
Q 005474 417 MITI-CSCRGKVSEAEAMFNEMLEAGFEPNLF-VLTSLIQCYGKAQRTDDVV---RALNRLPELGITPDD--RFCGCLLN 489 (695)
Q Consensus 417 li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~pd~--~~~~~ll~ 489 (695)
+-.. .-..|+++.|..+++.+.+.- |+.. .-..-+....+.|..+.+. .++....+....+.. ..+.-...
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFAR 448 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHH
Confidence 2222 344679999999999988753 5432 2233445566778888877 333333322112211 11111111
Q ss_pred -HHhcCCH-HHHHHHHHHHHHcCCChhHHH
Q 005474 490 -VMTQTPK-EELGKLVECVEKSNSKLGYVV 517 (695)
Q Consensus 490 -~~~~~~~-~~a~~~~~~~~~~~p~~~~~~ 517 (695)
.+.-.++ +.|..++.++....|+.-...
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~ 478 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDILPDCKVLY 478 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcCCccHHHH
Confidence 1112233 777788888877777654433
No 349
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=65.06 E-value=8.1 Score=23.26 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 005474 552 CLIDLCVNLNLLENACKLLELGLTL 576 (695)
Q Consensus 552 ~L~~~~~~~g~~~~A~~~l~~~~~~ 576 (695)
.++.++.+.|++++|.++|++.++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567788888888888888887764
No 350
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=64.23 E-value=1.6e+02 Score=29.41 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=33.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005474 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT---FSSMITICSCRGKVSEAEAMFNEMLE 439 (695)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (695)
|.-+..+.|+..+|.+.|+++.+.- |-... ...||.++....-+.....++.+..+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~---pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEF---PLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4444456788888888888876642 32222 23566666666555555555554444
No 351
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.00 E-value=1.4e+02 Score=28.51 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=12.3
Q ss_pred HhcCCHHHHHHHHHHhHhCC
Q 005474 386 ADVGYTDEAFEIFEDMKSSE 405 (695)
Q Consensus 386 ~~~g~~~~A~~~~~~m~~~~ 405 (695)
+..+++.+|+++|+++....
T Consensus 165 a~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34566667777777665543
No 352
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.80 E-value=1.2e+02 Score=27.92 Aligned_cols=90 Identities=10% Similarity=0.032 Sum_probs=55.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005474 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS-----SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 455 (695)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 455 (695)
+...+...|++++|+..++..... +.-..+. .|.......|.+|+|+..++...+.++ .......-.+.
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDi 168 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDI 168 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhH
Confidence 345667778888888887776642 2222222 334445667777888777776665332 22223334456
Q ss_pred HHHcCCHhHHHHHHHHhhhCC
Q 005474 456 YGKAQRTDDVVRALNRLPELG 476 (695)
Q Consensus 456 ~~~~g~~~~A~~~~~~m~~~g 476 (695)
+...|+-++|..-|++.++.+
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 777788888888887777654
No 353
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.43 E-value=14 Score=24.65 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=12.6
Q ss_pred HHHHHHHcCCHhHHHHHHHHhhh
Q 005474 452 LIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 452 li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
+..+|...|+.+.|..++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555553
No 354
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.32 E-value=78 Score=30.92 Aligned_cols=89 Identities=11% Similarity=0.038 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 005474 168 YNVTMKVFRKCRDLDKAERLFDDMLDR--GVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245 (695)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 245 (695)
.-.=|.+++..+++.+++...-+--+. .++| .....-|-.|.+.+.+..+.++-....+..-..+...|.+++..|
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 445578888889998887664333221 2333 344445556888888888888877776532223444577777666
Q ss_pred Hh-----cCCHHHHHHHH
Q 005474 246 GR-----AGNVEMAFGLY 258 (695)
Q Consensus 246 ~~-----~g~~~~A~~~~ 258 (695)
.. .|.+++|+++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 54 48888888776
No 355
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=63.29 E-value=11 Score=22.71 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=12.4
Q ss_pred HHHHHHHcCCHhHHHHHHHHhhh
Q 005474 452 LIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 452 li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
+..++.+.|++++|...|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34445555555566555555543
No 356
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.94 E-value=1.5e+02 Score=29.77 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 005474 236 LTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282 (695)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 282 (695)
..|..++.+|+...-++.|+..+++..+.| ..+...|-.=++.+.+
T Consensus 300 ~l~kq~l~~~A~d~aieD~i~~L~~~~r~G-~i~l~~yLr~VR~lsR 345 (365)
T KOG2391|consen 300 PLYKQILECYALDLAIEDAIYSLGKSLRDG-VIDLDQYLRHVRLLSR 345 (365)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHhcC-eeeHHHHHHHHHHHHH
Confidence 334444444444444444444444444444 2334444333333333
No 357
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=62.92 E-value=21 Score=21.63 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 272 AFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555566666666666666665544
No 358
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.19 E-value=1.1e+02 Score=26.78 Aligned_cols=79 Identities=11% Similarity=0.123 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCC-hhHHHHHHHhchhCCCCCCHHHHHHH
Q 005474 168 YNVTMKVFRKCRDLDKAERLFDDMLDRG-----VKPDNVTFSTLISCARMNNL-PNKAVEWFERMPSFGCDPDALTYSSM 241 (695)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l 241 (695)
.|.++.-....+++...+.+++.+..-. -..+...|++++.+.....- --.+..+|..|++.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5555555555566666666655553210 01233344444444433333 22334444444444444444444444
Q ss_pred HHHHH
Q 005474 242 IDAYG 246 (695)
Q Consensus 242 i~~~~ 246 (695)
|.++.
T Consensus 122 i~~~l 126 (145)
T PF13762_consen 122 IKAAL 126 (145)
T ss_pred HHHHH
Confidence 44443
No 359
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=61.34 E-value=1.5e+02 Score=28.18 Aligned_cols=40 Identities=25% Similarity=0.529 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCCHHH
Q 005474 443 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 483 (695)
Q Consensus 443 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~ 483 (695)
.|.+.....++..| ..+++++|.+++.++.+.|..|.+..
T Consensus 236 ~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Dii 275 (333)
T KOG0991|consen 236 EPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPEDII 275 (333)
T ss_pred CCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHHH
Confidence 36666666666654 45788999999999888998886654
No 360
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.72 E-value=3.3e+02 Score=31.80 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005474 238 YSSMIDAYGRAGNVEMAFGLYDRARN 263 (695)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~~~~ 263 (695)
|..|+..|...|+.++|++++.+..+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 67788888888888888888887775
No 361
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=60.47 E-value=44 Score=33.39 Aligned_cols=88 Identities=14% Similarity=-0.004 Sum_probs=52.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 005474 313 DTMGRAKRPWQVKTIYKEMTDNGLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 391 (695)
Q Consensus 313 ~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 391 (695)
+-|.+.|++++|+..|..-... .| |.+++..-..+|.+...+..|..-.+.....+-. -+-.|..-+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhH
Confidence 4588899999999888876653 34 7788887888888888887776655554433100 111222222233334445
Q ss_pred HHHHHHHHHhHh
Q 005474 392 DEAFEIFEDMKS 403 (695)
Q Consensus 392 ~~A~~~~~~m~~ 403 (695)
.+|.+=++....
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 555555555444
No 362
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.89 E-value=69 Score=30.47 Aligned_cols=76 Identities=9% Similarity=-0.087 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHhhhhcchh------hHHHHHHHHHHhcccCccccchHHHHHHHHhcCCHHHHHHHH
Q 005474 497 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG------DFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLL 570 (695)
Q Consensus 497 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------~~~~eA~~l~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~l 570 (695)
+.+..--+....+.|+.......||....... ..+.+|..+.+.-+..+...++..|.++-.+.=...++.++.
T Consensus 61 ~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~ 140 (284)
T KOG4642|consen 61 EPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIR 140 (284)
T ss_pred hhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHH
Confidence 34444444444455554444444443332221 023334444444455556667777777766555555666655
Q ss_pred HH
Q 005474 571 EL 572 (695)
Q Consensus 571 ~~ 572 (695)
++
T Consensus 141 Q~ 142 (284)
T KOG4642|consen 141 QE 142 (284)
T ss_pred HH
Confidence 43
No 363
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=58.60 E-value=16 Score=20.98 Aligned_cols=28 Identities=21% Similarity=0.141 Sum_probs=23.6
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005474 549 YCNCLIDLCVNLNLLENACKLLELGLTL 576 (695)
Q Consensus 549 ~~~~L~~~~~~~g~~~~A~~~l~~~~~~ 576 (695)
+|..++..+...|+++.|...++.+++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4667888899999999999999888754
No 364
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=58.13 E-value=99 Score=25.00 Aligned_cols=49 Identities=8% Similarity=0.008 Sum_probs=20.1
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 005474 351 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405 (695)
Q Consensus 351 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 405 (695)
...|++++|..+.+.+ ..||...|-+|.. .+.|..+++..-+.+|..+|
T Consensus 50 mNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 50 MNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3444444444443332 2344444433322 23344444444444444443
No 365
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.03 E-value=3.2e+02 Score=30.92 Aligned_cols=156 Identities=12% Similarity=0.054 Sum_probs=86.5
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005474 134 DCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMN 213 (695)
Q Consensus 134 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 213 (695)
|.+..+-....+++|+++.+.-.....-.--...+...|..+...|++++|-.+.-.|... +..-|.--+.-+...
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 3344444444577777766554332110013456888899999999999999998888754 566666666666665
Q ss_pred CChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---------CC-------CCCCHHHHHHHH
Q 005474 214 NLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARN---------EK-------WRIDPNAFSTLI 277 (695)
Q Consensus 214 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~g-------~~~~~~~~~~li 277 (695)
++.... +.-+.......+...|..++..+.. .+...-.++..+... .. ..-+...-..|+
T Consensus 437 ~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 437 DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred cccchh---hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 554433 3333332223456677777777766 222222222111000 00 011222333466
Q ss_pred HHHHHcCChHHHHHHHHHHH
Q 005474 278 KLYGTAGNFDGCLNVYEEMK 297 (695)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~m~ 297 (695)
..|...+++..|+.++-..+
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHccChHHHHHHHHhcc
Confidence 77777777777777776654
No 366
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.69 E-value=1e+02 Score=24.95 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=24.5
Q ss_pred HHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 005474 209 CARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK 265 (695)
Q Consensus 209 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 265 (695)
.+...|++++|..+.+.+ +.||...|..|-. .+.|..+++..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344455555555555444 2455555544433 24454454444444554444
No 367
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=57.62 E-value=2.1e+02 Score=28.68 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHH-HHHHcCCHhHHHHHHHHhhhCCCCCCHH
Q 005474 413 TFSSMITICSCRGKVSEAEAMFNEMLE----AGFEPNLFVLTSLIQ-CYGKAQRTDDVVRALNRLPELGITPDDR 482 (695)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 482 (695)
.+.....-||+.|+.+.|.+.+.+..+ .|.+-|+..+.+=+. .|..+.-+.+-++..+.+.+.|-..+..
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr 180 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR 180 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh
Confidence 344555667777777777776655443 455556655544333 3344444455555556666666665543
No 368
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.21 E-value=2e+02 Score=27.92 Aligned_cols=175 Identities=13% Similarity=0.161 Sum_probs=96.4
Q ss_pred CCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhhCCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHc---CC
Q 005474 229 FGCDPDALTYSSMIDAY-GRAGNVEMAFGLYDRARNEKWRIDPN---AFSTLIKLYGTAGNFDGCLNVYEEMKAI---GV 301 (695)
Q Consensus 229 ~g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~ 301 (695)
.+-+||+..-|..-..- .+....++|+.-|++..+..-.-... +.--+|..+.+.|++++..+.|.+|..- .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34566665444322211 23457889999999888754233333 4455688888899999988888887431 11
Q ss_pred C--CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 005474 302 K--PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNW----NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 374 (695)
Q Consensus 302 ~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 374 (695)
. -+..+.|.+++......+.+...+.++.-.+. .-..|. .|-+-|...|...+.+....++++++...-..-|
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 1 13455667777666666666665555543210 000111 1223455566666666666666666654321111
Q ss_pred -----------HHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 005474 375 -----------VTLYNTLLAMCADVGYTDEAFEIFEDMKS 403 (695)
Q Consensus 375 -----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 403 (695)
...|..=|+.|....+-.....++++...
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 22444455566666665566666665543
No 369
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=56.20 E-value=2.2e+02 Score=28.32 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=35.8
Q ss_pred cCChHHHHHHH-HHHHHcCCCCCH----HhHHHHHHHHHhcCChH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCh
Q 005474 283 AGNFDGCLNVY-EEMKAIGVKPNM----ITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 356 (695)
Q Consensus 283 ~g~~~~A~~~~-~~m~~~g~~p~~----~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 356 (695)
...+++..... ++|++.++ |+. +.|..++++--=+++-+ -|.+.++. ..+|.-|+.+++..|+.
T Consensus 268 e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g~s 337 (412)
T KOG2297|consen 268 EDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQS 337 (412)
T ss_pred CCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCChH
Confidence 34455555444 44555554 453 35666665532221111 12233332 34677888888888887
Q ss_pred HHHH
Q 005474 357 EDTL 360 (695)
Q Consensus 357 ~~A~ 360 (695)
+..+
T Consensus 338 EL~L 341 (412)
T KOG2297|consen 338 ELEL 341 (412)
T ss_pred HHHH
Confidence 7543
No 370
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.95 E-value=1.4e+02 Score=31.49 Aligned_cols=76 Identities=22% Similarity=0.182 Sum_probs=33.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHH--HHHHHHHHHHhcCCH
Q 005474 176 RKCRDLDKAERLFDDMLDRGVKPDNVT--FSTLISCARMNNLPNKAVEWFERMPSFGCDPDAL--TYSSMIDAYGRAGNV 251 (695)
Q Consensus 176 ~~~g~~~~A~~l~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~ 251 (695)
.+.|+.+-+. .+.+.|..++... ..+.+..++..|+.+-+. .+.+.|..|+.. ...+.+...+..|+.
T Consensus 10 ~~~g~~~iv~----~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIAR----RLLDIGINPNFEIYDGISPIKLAMKFRDSEAIK----LLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 3445554433 3334555554322 223344444556554332 233334333321 112334455566776
Q ss_pred HHHHHHHH
Q 005474 252 EMAFGLYD 259 (695)
Q Consensus 252 ~~A~~~~~ 259 (695)
+.+..+++
T Consensus 82 ~~v~~Ll~ 89 (413)
T PHA02875 82 KAVEELLD 89 (413)
T ss_pred HHHHHHHH
Confidence 66555544
No 371
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=55.37 E-value=1.4e+02 Score=28.23 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=34.3
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHH--HHHHHHHHcCChhHHHHHHHhch
Q 005474 161 ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKP---DNVTFS--TLISCARMNNLPNKAVEWFERMP 227 (695)
Q Consensus 161 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~~--~li~~~~~~g~~~~A~~~~~~m~ 227 (695)
+.....-+|.|+--|.-...+.+|.+.|.. +.|+.+ |..+++ .-|......|+.++|++...++.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 445555555555555444445555555533 334443 333333 34445666777777776666553
No 372
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=55.29 E-value=1.4e+02 Score=26.03 Aligned_cols=79 Identities=10% Similarity=0.193 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005474 309 NNLLDTMGRAKRPWQVKTIYKEMTDNGL-----SPNWNTYASLLRAYGRARY-GEDTLSVYREMKEKGMQLSVTLYNTLL 382 (695)
Q Consensus 309 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li 382 (695)
|.++.-....+.......+++.+..... ..+...|.+++.+..+..- --.+..+|+-|++.+.+++...|..+|
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444444445544444444421100 1123344444444433333 223444455555544555555555555
Q ss_pred HHHHh
Q 005474 383 AMCAD 387 (695)
Q Consensus 383 ~~~~~ 387 (695)
.++.+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 55443
No 373
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=55.29 E-value=1.4e+02 Score=25.81 Aligned_cols=72 Identities=10% Similarity=0.018 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHcC---CHhHHHHHHHHhhhCCCCCC-HH-HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHH
Q 005474 444 PNLFVLTSLIQCYGKAQ---RTDDVVRALNRLPELGITPD-DR-FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 516 (695)
Q Consensus 444 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~pd-~~-~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~ 516 (695)
++..+--.+..++.+.. +..+.+.+|++..+. -.|+ .. ....|.-++.+.+. +.+.++++...+.+|++..+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 44445445555565544 345567777777652 2332 22 22233336677777 88888888888888776554
No 374
>PRK04946 hypothetical protein; Provisional
Probab=54.11 E-value=40 Score=30.76 Aligned_cols=62 Identities=26% Similarity=0.207 Sum_probs=46.2
Q ss_pred eeccccCChHHHHHHHHHHHHHHHHHHhcCCCCCCeeEEEeecccccccchhHHHHHHHHhhh--cCCCCccCCC
Q 005474 591 SLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKE--LNAPFHDSPD 663 (695)
Q Consensus 591 ~~~l~~~s~G~~~~a~~~w~~~~~~~~~~g~~~p~~~~i~~g~~~~~~~~~~~~~~i~~~l~~--~~~pf~~~~~ 663 (695)
.+|||++..-.|..++..++...... | -.++.|+.|.|. ..|+..|...|.. ...-|+.++-
T Consensus 97 ~LDLhG~~~eeA~~~L~~fl~~a~~~---g---~r~v~IIHGkG~-----gvLk~~V~~wL~q~~~V~af~~A~~ 160 (181)
T PRK04946 97 FLDLHGLTQLQAKQELGALIAACRKE---H---VFCACVMHGHGK-----HILKQQTPLWLAQHPDVMAFHQAPK 160 (181)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHc---C---CCEEEEEcCCCH-----hHHHHHHHHHHcCCchhheeeccCc
Confidence 57999999999999999999886652 2 235689999986 4688888888865 3334665554
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.58 E-value=42 Score=25.70 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHH
Q 005474 448 VLTSLIQCYGKAQRTDDVVRA 468 (695)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~ 468 (695)
++..++.+|+..|++.+++.+
T Consensus 45 ~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 45 VLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555444443
No 376
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=53.42 E-value=2e+02 Score=27.13 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 005474 378 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA--GFEPNLFVLTSLIQC 455 (695)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~ 455 (695)
.+..+..+.+.+.+.+|+...++-.+.. +.|..+-..+++.||-.|++++|..-++-.-+. ...+...+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566777788888888887777655 456667778888888888888888776665542 123345667777764
No 377
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.27 E-value=1.9e+02 Score=26.83 Aligned_cols=86 Identities=16% Similarity=0.145 Sum_probs=43.9
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 005474 386 ADVGYTDEAFEIFEDMKSSENCQPD-----SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKA 459 (695)
Q Consensus 386 ~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 459 (695)
.+.|++++|..-|......- ++. ...|..-..++.+.+.++.|++--...++.+ |+ .....--..+|.+.
T Consensus 106 F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKM 181 (271)
T ss_pred hhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhh
Confidence 34555555555555554432 222 2233333344556666666666555555532 31 11222223466667
Q ss_pred CCHhHHHHHHHHhhhC
Q 005474 460 QRTDDVVRALNRLPEL 475 (695)
Q Consensus 460 g~~~~A~~~~~~m~~~ 475 (695)
.++++|+.-|+++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7777777777777654
No 378
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.24 E-value=1e+02 Score=26.05 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005474 323 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 369 (695)
Q Consensus 323 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 369 (695)
+..+.++.+....+.|+......-+.++.+.+++..|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44555555555666666666666777777777777777777666543
No 379
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.13 E-value=95 Score=32.81 Aligned_cols=12 Identities=17% Similarity=-0.014 Sum_probs=5.5
Q ss_pred HHHHHHhcCCHH
Q 005474 241 MIDAYGRAGNVE 252 (695)
Q Consensus 241 li~~~~~~g~~~ 252 (695)
.+...+..|+.+
T Consensus 38 pL~~A~~~~~~~ 49 (413)
T PHA02875 38 PIKLAMKFRDSE 49 (413)
T ss_pred HHHHHHHcCCHH
Confidence 334444455543
No 380
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=50.64 E-value=7e+02 Score=32.58 Aligned_cols=150 Identities=12% Similarity=0.080 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 005474 170 VTMKVFRKCRDLDKAERLFDDM----LDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245 (695)
Q Consensus 170 ~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 245 (695)
.+..+=.+++.+.+|.-.++.- .+. .....-|-.+...|...++++....+...-.. .|+ . ...|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l-~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--L-YQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--H-HHHHHHH
Confidence 3444556778888888888773 222 11223344444488888888877776653111 122 2 2334455
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHH-HHHHHhcCChHHH
Q 005474 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL-LDTMGRAKRPWQV 324 (695)
Q Consensus 246 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a 324 (695)
...|++..|..-|+++.+.+ ++...+++-++..-...|.++.++-..+-.... ..+....++++ +.+--+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 66789999999999998775 334667777777666777777777655554432 12233334333 3444666777766
Q ss_pred HHHHH
Q 005474 325 KTIYK 329 (695)
Q Consensus 325 ~~~~~ 329 (695)
...+.
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 66554
No 381
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=49.71 E-value=52 Score=23.02 Aligned_cols=31 Identities=6% Similarity=-0.031 Sum_probs=20.3
Q ss_pred HHhcCCH-HHHHHHHHHHHHcCCChhHHHHHH
Q 005474 490 VMTQTPK-EELGKLVECVEKSNSKLGYVVKLL 520 (695)
Q Consensus 490 ~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l 520 (695)
++.+.|+ ++|.++.+.+.+.+|++..+..+.
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 5667777 777777777777778776665444
No 382
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.42 E-value=66 Score=21.87 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=15.2
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005474 423 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 453 (695)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 453 (695)
+.|-++++...+++|.+.|+.-+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555544444444433
No 383
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=48.68 E-value=3.6e+02 Score=28.64 Aligned_cols=87 Identities=11% Similarity=0.033 Sum_probs=46.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005474 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMA 254 (695)
Q Consensus 175 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 254 (695)
+...|+++.+.+.+...... +.....+..++++...+.|++++|..+-+.|....++ +......-....-..|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 45566777766666554322 2234456666666666677777777766666654443 222222222222233556666
Q ss_pred HHHHHHHhh
Q 005474 255 FGLYDRARN 263 (695)
Q Consensus 255 ~~~~~~~~~ 263 (695)
.-.++++..
T Consensus 411 ~~~wk~~~~ 419 (831)
T PRK15180 411 YHYWKRVLL 419 (831)
T ss_pred HHHHHHHhc
Confidence 666666554
No 384
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.15 E-value=1.3e+02 Score=25.49 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=17.7
Q ss_pred HHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005474 393 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435 (695)
Q Consensus 393 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 435 (695)
.+.++|..|...++..--...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444433333333444444444444444444444443
No 385
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=47.91 E-value=85 Score=26.52 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=20.9
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhch
Q 005474 188 FDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227 (695)
Q Consensus 188 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 227 (695)
++.+....+.|+.......+++|.+.+++..|+.+|+-++
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3334444445555555555555555555555555555444
No 386
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.61 E-value=68 Score=29.68 Aligned_cols=32 Identities=19% Similarity=0.417 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHhchh
Q 005474 197 KPDNVTFSTLISCARMNNLPNKAVEWFERMPS 228 (695)
Q Consensus 197 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 228 (695)
.|+..+|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444555555444444443
No 387
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.98 E-value=43 Score=24.31 Aligned_cols=27 Identities=7% Similarity=0.064 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 447 FVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 447 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
.---.+|.+|...|++++|.++++++.
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333445556666666666666655543
No 388
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.25 E-value=79 Score=29.22 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005474 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 439 (695)
Q Consensus 408 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (695)
.|+..+|..++..+...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555554
No 389
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.43 E-value=1.6e+02 Score=24.14 Aligned_cols=75 Identities=19% Similarity=0.104 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 005474 391 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 470 (695)
Q Consensus 391 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 470 (695)
.++|..|.+-+...+ .-....--+-+..+.+.|++++|... -. ....||...|-+|-. .+.|-.+++...+.
T Consensus 22 H~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~ALl~---~~-~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 22 HQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEALLL---PQ-CHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHHHHH---HT-TS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHh---cc-cCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 555555555555543 11222222223334555666555111 11 112355555544432 35555555555555
Q ss_pred Hhh
Q 005474 471 RLP 473 (695)
Q Consensus 471 ~m~ 473 (695)
++.
T Consensus 94 rla 96 (116)
T PF09477_consen 94 RLA 96 (116)
T ss_dssp HHC
T ss_pred HHH
Confidence 544
No 390
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=45.43 E-value=3.4e+02 Score=27.50 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHH---cCCHHHHHHH
Q 005474 357 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC---RGKVSEAEAM 433 (695)
Q Consensus 357 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~ 433 (695)
+.-+.++++.++.+. -+......++..+.+..+.++..+.++++.... +-+...|...|+.... .-.++....+
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 445556666655533 356666667777777777777777777777654 3456666666655443 2234555555
Q ss_pred HHHHH
Q 005474 434 FNEML 438 (695)
Q Consensus 434 ~~~m~ 438 (695)
|.+..
T Consensus 125 y~~~l 129 (321)
T PF08424_consen 125 YEKCL 129 (321)
T ss_pred HHHHH
Confidence 54443
No 391
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=45.40 E-value=1.3e+02 Score=33.40 Aligned_cols=76 Identities=17% Similarity=0.161 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005474 360 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 438 (695)
Q Consensus 360 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 438 (695)
....+.+..+-.-.+...-.-++..|.+.|-.+.|.++.+.+-..- -...-|..-+..+.+.|+......+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~---~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL---LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444433233344445556666666666666666666554322 122334445555566666655555555444
No 392
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.28 E-value=84 Score=21.37 Aligned_cols=31 Identities=10% Similarity=0.243 Sum_probs=16.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005474 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207 (695)
Q Consensus 177 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 207 (695)
+.|-.+++..+++.|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555554444
No 393
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=44.15 E-value=3.4e+02 Score=27.05 Aligned_cols=20 Identities=5% Similarity=0.187 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHcCCHHHHH
Q 005474 412 WTFSSMITICSCRGKVSEAE 431 (695)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~ 431 (695)
.+|.-|+.++|..|+.+-.+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 35777888888888876543
No 394
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.88 E-value=51 Score=23.93 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=11.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 005474 275 TLIKLYGTAGNFDGCLNVYEEMK 297 (695)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~m~ 297 (695)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555555443
No 395
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=43.82 E-value=2.7e+02 Score=25.89 Aligned_cols=42 Identities=10% Similarity=-0.022 Sum_probs=19.3
Q ss_pred cCChHHHHHHHHHHHHc---CCCCCHHhHHHHHHHHHhcCChHHH
Q 005474 283 AGNFDGCLNVYEEMKAI---GVKPNMITYNNLLDTMGRAKRPWQV 324 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a 324 (695)
..+.++++.++.+..+. +-.+|+..+..|.+.+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444555444444322 1133445555555555555555444
No 396
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=43.11 E-value=4e+02 Score=27.59 Aligned_cols=154 Identities=10% Similarity=0.015 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHcCCHhHHHHHHHHhhhCCCCCCHHHH
Q 005474 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPELGITPDDRFC 484 (695)
Q Consensus 408 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 484 (695)
+-...++..+-..+...|+.+.|.+++++.+-.- ..++......+ ...|.. + ......-|...|
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~--------r-L~~~~~eNR~ff 103 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNC--------R-LDYRRPENRQFF 103 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCcc--------c-cCCccccchHHH
Confidence 4456666677777788888888877777664200 00000000000 000000 0 011111244444
Q ss_pred HHHH---HHHhcCCH-HHHHHHHHHHHHcCCC-hhHHHHHHhhhhcchhhHHHHHHHHHHhccc--Ccc-----ccchHH
Q 005474 485 GCLL---NVMTQTPK-EELGKLVECVEKSNSK-LGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVK-----KAYCNC 552 (695)
Q Consensus 485 ~~ll---~~~~~~~~-~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~--~~~-----~~~~~~ 552 (695)
.++. ..+.+.|. ..|.++.+-+..++|. ++..+-++...++-..+..+--.++.+.... ..+ +.+.=+
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S 183 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFS 183 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHH
Confidence 4433 34455566 7777777777777777 5544444443333223244444555444322 100 011123
Q ss_pred HHHHHHhcCCH---------------HHHHHHHHHHH
Q 005474 553 LIDLCVNLNLL---------------ENACKLLELGL 574 (695)
Q Consensus 553 L~~~~~~~g~~---------------~~A~~~l~~~~ 574 (695)
..=+++..++. +.|.+.+++|+
T Consensus 184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai 220 (360)
T PF04910_consen 184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAI 220 (360)
T ss_pred HHHHHHHhcCccccccccccccccchhHHHHHHHHHH
Confidence 33445555555 78888888886
No 397
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.97 E-value=2.7e+02 Score=32.06 Aligned_cols=178 Identities=15% Similarity=0.113 Sum_probs=107.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005474 177 KCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFG 256 (695)
Q Consensus 177 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 256 (695)
-++++++.+.+.+.-.- .=.++|.-+.+.|..+-|+.+.+.=. + -...+..+|+++.|++
T Consensus 605 i~k~ydeVl~lI~ns~L--------vGqaiIaYLqKkgypeiAL~FVkD~~---------t---RF~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 605 LNKKYDEVLHLIKNSNL--------VGQAIIAYLQKKGYPEIALHFVKDER---------T---RFELALECGNLEVALE 664 (1202)
T ss_pred HhhhhHHHHHHHHhcCc--------ccHHHHHHHHhcCCcceeeeeecCcc---------h---heeeehhcCCHHHHHH
Confidence 34566666655433221 12345666777888888876654322 1 1234567799999887
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005474 257 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 336 (695)
Q Consensus 257 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 336 (695)
.-.++ -|..+|..|...-.+.|+.+-|+..|++.+. |..|--.|.-.|+.++..++.+....++
T Consensus 665 ~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~- 728 (1202)
T KOG0292|consen 665 AAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN- 728 (1202)
T ss_pred HHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh-
Confidence 65554 3678999999999999999999999988764 3333345666788887777666554431
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 005474 337 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 404 (695)
Q Consensus 337 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 404 (695)
|..+. .+...| .|+.++-.++++.- |.. + ..|- .-..+|.-++|.++.++....
T Consensus 729 --D~~~~-~qnalY--l~dv~ervkIl~n~---g~~-~-layl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 729 --DATGQ-FQNALY--LGDVKERVKILENG---GQL-P-LAYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred --hhHHH-HHHHHH--hccHHHHHHHHHhc---Ccc-c-HHHH----HHhhcCcHHHHHHHHHhhccc
Confidence 22221 122222 46666666555432 222 2 1221 123568888899998888764
No 398
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.93 E-value=2.1e+02 Score=24.32 Aligned_cols=62 Identities=8% Similarity=0.049 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 408 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 408 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
+.|.......+. |++.-+ .+.++|+.|...|+.- -...|......+...|++++|..+|+..
T Consensus 63 ~nD~RylkiWi~-ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 63 KNDERYLKIWIK-YADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp TT-HHHHHHHHH-HHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-HHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 445554444443 443333 8999999999988755 4667888888999999999999999763
No 399
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.79 E-value=3.5e+02 Score=28.21 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=38.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHH--cCChhHHHHHHHhchh
Q 005474 173 KVFRKCRDLDKAERLFDDMLDRGVKPDNV--TFSTLISCARM--NNLPNKAVEWFERMPS 228 (695)
Q Consensus 173 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~ 228 (695)
..+...+++..|.++|+.+.++ ++++.. .+..+..+|.. .-++++|.+.|+....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455789999999999999887 555554 34444455543 5567788888887665
No 400
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.15 E-value=4.4e+02 Score=27.85 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=18.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 005474 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 314 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 314 (695)
..+.+.|+.++..|.+.|..|....-..++.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35666677777777766665554444433333
No 401
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=42.01 E-value=5.6e+02 Score=29.01 Aligned_cols=27 Identities=7% Similarity=0.180 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005474 273 FSTLIKLYGTAGNFDGCLNVYEEMKAI 299 (695)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 299 (695)
|..+..+|.-..+.+.+.++++++.+.
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 455667777788888888888888874
No 402
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.50 E-value=1.5e+02 Score=27.09 Aligned_cols=20 Identities=30% Similarity=0.152 Sum_probs=10.5
Q ss_pred HHHHcCChhHHHHHHHhchh
Q 005474 209 CARMNNLPNKAVEWFERMPS 228 (695)
Q Consensus 209 ~~~~~g~~~~A~~~~~~m~~ 228 (695)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45555555555555555443
No 403
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.48 E-value=1.8e+02 Score=26.60 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=17.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHh
Q 005474 381 LLAMCADVGYTDEAFEIFEDMKS 403 (695)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m~~ 403 (695)
.+-.|.+.|.+++|.+++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 44567888888888888888766
No 404
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.11 E-value=63 Score=31.95 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=29.4
Q ss_pred CCCCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 005474 161 ASKEVIL-YNVTMKVFRKCRDLDKAERLFDDMLDRGVKP 198 (695)
Q Consensus 161 ~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 198 (695)
..||... ||..|....+.||+++|+.++++..+.|+.-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 3456555 7788888888888888888888888887653
No 405
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=40.78 E-value=2.1e+02 Score=31.17 Aligned_cols=51 Identities=22% Similarity=0.180 Sum_probs=21.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 247 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 247 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
+.|....|..++.+.+... ...+-++-.+.++|.-..+.++|++.|++..+
T Consensus 654 ~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 654 HYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 3333334444443333322 22333444444444445555555555544444
No 406
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.36 E-value=1.7e+02 Score=25.69 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=32.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005474 328 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389 (695)
Q Consensus 328 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 389 (695)
.+.+.+.|.+.+..- ..++..+.+.+..-.|.++|+++.+.+...+..|-..-++.+...|
T Consensus 9 ~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344445555544332 2345555555555666777777766666555555444455555544
No 407
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=40.35 E-value=3e+02 Score=25.38 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=33.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCC--------------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005474 345 SLLRAYGRARYGEDTLSVYREMKEKGMQ--------------LSVTLYNTLLAMCADVGYTDEAFEIFE 399 (695)
Q Consensus 345 ~li~~~~~~g~~~~A~~~~~~m~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~ 399 (695)
+++..|-+.-++.+..++++.|.+..+. +.-..-|.....+.+.|.++.|+.+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 4666777888888888888888765322 122234444555555666666655555
No 408
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=40.15 E-value=3.7e+02 Score=27.21 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=62.9
Q ss_pred HhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC----CH---HHHHHHHHHHHHcCCChhHHHH---HHhhhhcchhhHH
Q 005474 462 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQT----PK---EELGKLVECVEKSNSKLGYVVK---LLLEEQDIEGDFK 531 (695)
Q Consensus 462 ~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~----~~---~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~ 531 (695)
++++..++++....+. |........|.+|... ++ .....+|+.+..+.|+-...+| .++.. .| .
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~---~G--p 345 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMR---EG--P 345 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHh---hh--H
Confidence 3455556665554443 5555555555544321 11 4444456666666655332222 11111 13 3
Q ss_pred HHHHHHHHhcccCcc----ccchHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 532 KEATELFNSISKDVK----KAYCNCLIDLCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 532 ~eA~~l~~~~~~~~~----~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
+.+..+++.+..+|. ..++..-.+.|.+.|+.++|...|++++...
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La 395 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALA 395 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhc
Confidence 455566666544432 2356888999999999999999999998653
No 409
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.05 E-value=1.6e+02 Score=32.49 Aligned_cols=47 Identities=13% Similarity=0.043 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCh
Q 005474 170 VTMKVFRKCRDLDKAERLFDDMLDR--GVKPDNVTFSTLISCARMNNLP 216 (695)
Q Consensus 170 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~li~~~~~~g~~ 216 (695)
+++.+|..+|++.++.++++.+... |-+.=...||..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5566666666666666666665543 2222234555666666666654
No 410
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.63 E-value=68 Score=31.75 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=25.9
Q ss_pred CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 005474 231 CDPDALT-YSSMIDAYGRAGNVEMAFGLYDRARNEKWR 267 (695)
Q Consensus 231 ~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 267 (695)
+.||..+ |+..|....+.||+++|++++++..+.|+.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3345444 457777778888888888888888877754
No 411
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=39.12 E-value=6.1e+02 Score=28.54 Aligned_cols=159 Identities=18% Similarity=0.179 Sum_probs=93.0
Q ss_pred HHHHHhhCChHHHHHHHHHHHhcCCCCCCHh-----HHHHHHHHHHhcCCHHHHHHHHHHHHHc--C--CCCCHHHHHHH
Q 005474 136 VIILNNMTNPDTAALALTYFTNKLKASKEVI-----LYNVTMKVFRKCRDLDKAERLFDDMLDR--G--VKPDNVTFSTL 206 (695)
Q Consensus 136 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~--g--~~p~~~~~~~l 206 (695)
.+++..-.+.+.|...++.......- ++.. +-..++..+.+.+... |...+++.++. + ..+-...|..+
T Consensus 67 ~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll 144 (608)
T PF10345_consen 67 SILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLL 144 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 34445556789999999977655422 3222 2334566666666555 99888887654 1 11222333333
Q ss_pred -HHHHHHcCChhHHHHHHHhchhCC---CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHhhCC---------CCCCHH
Q 005474 207 -ISCARMNNLPNKAVEWFERMPSFG---CDPDALTYSSMIDAYGR--AGNVEMAFGLYDRARNEK---------WRIDPN 271 (695)
Q Consensus 207 -i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~g---------~~~~~~ 271 (695)
+..+...+++..|.+.++.+...- ..|-..++..++.+... .+..+++.+.++++.... -.|-..
T Consensus 145 ~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~ 224 (608)
T PF10345_consen 145 KIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLK 224 (608)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHH
Confidence 333333479999999998876522 24445555566665543 355666777776663321 123456
Q ss_pred HHHHHHHHHH--HcCChHHHHHHHHHH
Q 005474 272 AFSTLIKLYG--TAGNFDGCLNVYEEM 296 (695)
Q Consensus 272 ~~~~li~~~~--~~g~~~~A~~~~~~m 296 (695)
+|..+++.++ ..|+++.+...++++
T Consensus 225 ~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 225 ALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777776554 567776776666554
No 412
>PRK11619 lytic murein transglycosylase; Provisional
Probab=38.22 E-value=6.4e+02 Score=28.57 Aligned_cols=118 Identities=8% Similarity=0.030 Sum_probs=70.6
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 005474 388 VGYTDEAFEIFEDMKSSENCQPDS--WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 465 (695)
Q Consensus 388 ~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 465 (695)
..+.+.|..++........+.+.. .++..+.......+..++|.+.++...... .+......-+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 356789999999876554322222 223344433344433667777777654432 2444455555555689999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 005474 466 VRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 508 (695)
Q Consensus 466 ~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~ 508 (695)
...+..|-...-. ...-..=+..++...|+ ++|...|+.+..
T Consensus 332 ~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999998643221 22222223455555777 999999998744
No 413
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.97 E-value=4.1e+02 Score=26.25 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh----hCCCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHcCC
Q 005474 235 ALTYSSMIDAYGRAGNVEMAFGLYDRAR----NEKWRIDPNAFST-LIKLYGTAGNFDGCLNVYEEMKAIGV 301 (695)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~ 301 (695)
...+..+...|++.++.+.+.++..+.. ..|.+.|+...-+ |.-.|....-.++-++..+.|.+.|.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 4455666677777777766666555443 2343433332211 11222222234555666666666654
No 414
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.35 E-value=1.5e+02 Score=23.82 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=24.1
Q ss_pred HHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhh
Q 005474 490 VMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLE 522 (695)
Q Consensus 490 ~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~ 522 (695)
.|+..|+ +.+.+-|+.-..+-|+.+.+.+.|..
T Consensus 81 Lys~~G~~e~a~~eFetEKalFPES~~fmDFLmk 114 (121)
T COG4259 81 LYSNSGKDEQAVREFETEKALFPESGVFMDFLMK 114 (121)
T ss_pred HHhhcCChHHHHHHHHHhhhhCccchhHHHHHHH
Confidence 4567777 77888887777777887777776654
No 415
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=37.29 E-value=7.4e+02 Score=29.04 Aligned_cols=69 Identities=13% Similarity=0.039 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh-hCCCCCCHHHHHHHHHHHhcCCH
Q 005474 428 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP-ELGITPDDRFCGCLLNVMTQTPK 496 (695)
Q Consensus 428 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~pd~~~~~~ll~~~~~~~~ 496 (695)
+.-.+.|.++.+---..|..++..-..-+...|++..|.+++.++. +.|-.++...|..++..|...|.
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 3344555555542112355555555556666777888888877776 35556666666555554444443
No 416
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=36.57 E-value=1.3e+02 Score=32.53 Aligned_cols=151 Identities=9% Similarity=-0.090 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 005474 268 IDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 345 (695)
Q Consensus 268 ~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 345 (695)
++..+.-+++.-.... ...+-+-.+|..|... +.|--...|...-..-..|+...|.+.+.........-..+....
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~ 647 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN 647 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence 5555555444333221 2234455566666532 222222222222223346888888888877665332223334445
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHH
Q 005474 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 422 (695)
Q Consensus 346 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 422 (695)
|.....+.|...+|..++.+...... ....++..+.++|....+++.|++.|++..+.. ..+...-+.|...-|
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~--~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSLGNAYLALKNISGALEAFRQALKLT--TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC--CCChhhHHHHHHHHH
Confidence 56666677788888888888776542 245566778899999999999999999988765 456666676665544
No 417
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=36.51 E-value=92 Score=23.91 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=28.6
Q ss_pred HcCCHhHHHHHHHHhhhCCCCCCH--HHHHHHHHHHhcCCH-HHHHH
Q 005474 458 KAQRTDDVVRALNRLPELGITPDD--RFCGCLLNVMTQTPK-EELGK 501 (695)
Q Consensus 458 ~~g~~~~A~~~~~~m~~~g~~pd~--~~~~~ll~~~~~~~~-~~a~~ 501 (695)
...+.++|+..|+..++.-..+.. .++.+++.+++..|+ .++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888877755444432 267777777777776 54444
No 418
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.54 E-value=1.8e+02 Score=28.18 Aligned_cols=55 Identities=13% Similarity=0.069 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHh----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005474 380 TLLAMCADVGYTDEAFEIFEDMKS----SENCQPDSWTFSSMITICSCRGKVSEAEAMF 434 (695)
Q Consensus 380 ~li~~~~~~g~~~~A~~~~~~m~~----~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 434 (695)
.+..-|.+.|++++|.++|+.+.. .|-..+...+...+..++.+.|+.+....+-
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 355566667777777777766532 1211223333344444444455554444433
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=35.44 E-value=2.1e+02 Score=22.72 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=27.5
Q ss_pred HHcCCHHHHHHHHHHHHH----CCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 422 SCRGKVSEAEAMFNEMLE----AGFEPN----LFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~----~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
.+.|++.+|.+-+.+..+ .+.... ....-.+.......|+.++|+..+++.+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456666666554444433 111110 1122223445566788888888887766
No 420
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.27 E-value=7.2e+02 Score=28.26 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCcccCccccCcc-ceee--ccccC--ChHHHHHHHHHHHHHHHHH
Q 005474 552 CLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPT-QWSL--HLKSL--SLGAALTALHIWINDLSKA 616 (695)
Q Consensus 552 ~L~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~-~w~~--~l~~~--s~G~~~~a~~~w~~~~~~~ 616 (695)
....+-.-.+++.+|.+.-+++.+... |..|-++-. ...+ +.+-- ..+..+.-...|++-+-..
T Consensus 371 ~y~~asVLAnd~~kaiqAae~mfKLk~-P~WYLkS~meni~l~~~fr~t~e~p~~e~q~~~FWmdF~lea 439 (1226)
T KOG4279|consen 371 TYFEASVLANDYQKAIQAAEMMFKLKP-PVWYLKSTMENILLINRFRPTIEPPEKEKQQFLFWMDFFLEA 439 (1226)
T ss_pred HhhhhhhhccCHHHHHHHHHHHhccCC-ceehHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHh
Confidence 345555667888888888888876542 333322100 0000 22211 3567778888999877655
No 421
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.05 E-value=7.7e+02 Score=28.59 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=27.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCChhHHHHHHHhch
Q 005474 174 VFRKCRDLDKAERLFDDMLDRGVKPDNV--TFSTLISCARMNNLPNKAVEWFERMP 227 (695)
Q Consensus 174 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~ 227 (695)
.|.+.|++++|+++-+. .|+.. .+..-...|.+.+++..|-++|.++.
T Consensus 367 ~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 367 TYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 46677888887776432 12221 12222235666777778877777763
No 422
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=34.11 E-value=91 Score=34.87 Aligned_cols=67 Identities=15% Similarity=-0.000 Sum_probs=0.0
Q ss_pred cCcCCCCCCCcccccccCCCCCcccccccchhhccccccccCCCCCCCCCCCCCCCCCC-------CCCCCCcceeecCC
Q 005474 11 SLFSTPKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGK-------TGSSPKSYIWVNPK 83 (695)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-------~~~~~~~~~~~~~~ 83 (695)
+....+++.-.++|. |.+++...++... .+++++|.+..+.+|+|+|. +|+++|-.-...|.
T Consensus 515 ~s~~~~~~~~~~iP~----PP~~pp~gG~g~p-------ppPppPPlpggag~PPPPpplPg~aG~PPpPppppg~~gpp 583 (1102)
T KOG1924|consen 515 SSPSQLLPIDGGIPP----PPPLPPTGGTGPP-------PPPPPPPLPGGAGPPPPPPPLPGIAGGPPPPPPPPGGGGPP 583 (1102)
T ss_pred cCcccCCCCCCCCCC----CCCCCCCCCCCCC-------CCCCCCCCCCCCCCCccCCCCCcccCCCCccCCCCCCCCCC
Q ss_pred CCCcc
Q 005474 84 SPRAS 88 (695)
Q Consensus 84 ~~~~~ 88 (695)
.|.++
T Consensus 584 PPPpp 588 (1102)
T KOG1924|consen 584 PPPPP 588 (1102)
T ss_pred CcCCC
No 423
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=33.70 E-value=2e+02 Score=22.76 Aligned_cols=21 Identities=24% Similarity=0.369 Sum_probs=12.1
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 005474 277 IKLYGTAGNFDGCLNVYEEMK 297 (695)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~ 297 (695)
.......|++++|.+.+++.+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 344555666666666666554
No 424
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.50 E-value=41 Score=28.73 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=9.5
Q ss_pred CChhHHHHHHHhchhCCCCCC
Q 005474 214 NLPNKAVEWFERMPSFGCDPD 234 (695)
Q Consensus 214 g~~~~A~~~~~~m~~~g~~p~ 234 (695)
|.-.+|-.+|.+|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 333444444444444444444
No 425
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=33.26 E-value=4.3e+02 Score=25.13 Aligned_cols=97 Identities=15% Similarity=0.012 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC--CCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005474 373 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ--PDSWTF--SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 448 (695)
Q Consensus 373 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 448 (695)
++..-+|.|+--|.-...+.+|...|..-. ++.. .|..++ ..-|....+.|++++|.+....+...-+.-|...
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 344444555554544444444544443322 2211 222222 2345555677777777776666543323333322
Q ss_pred HHHHH----HHHHHcCCHhHHHHHHHH
Q 005474 449 LTSLI----QCYGKAQRTDDVVRALNR 471 (695)
Q Consensus 449 ~~~li----~~~~~~g~~~~A~~~~~~ 471 (695)
+-.|. --..+.|..++|+++++.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22111 123566777777777765
No 426
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=32.49 E-value=2.2e+02 Score=23.46 Aligned_cols=26 Identities=8% Similarity=0.371 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005474 414 FSSMITICSCRGKVSEAEAMFNEMLE 439 (695)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (695)
|..|+..|...|..++|.+++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55566666666666666666665554
No 427
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.32 E-value=4.6e+02 Score=25.18 Aligned_cols=182 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 005474 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM-GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354 (695)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 354 (695)
++..+-+.|+++++.+.++++...+...+..-.+.|-.+| ...|....+.+++..+....-.-.......++..|.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk--- 83 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK--- 83 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH---
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH---
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005474 355 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 434 (695)
Q Consensus 355 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 434 (695)
.++-+++... .......+=..+.....-.++.-+|.+|+. .-........ ..-.+..-.+.|.+.|
T Consensus 84 -----~kie~EL~~~----C~eii~lId~~Lip~~~~~eskvfy~Kmkg----DyyRYlaE~~-~~~~~~~~~~~a~~aY 149 (236)
T PF00244_consen 84 -----KKIEDELIDI----CNEIIRLIDKSLIPSATSPESKVFYYKMKG----DYYRYLAEFD-SGDEKKEAAEKALEAY 149 (236)
T ss_dssp -----HHHHHHHHHH----HHHHHHHHHHTCHHHS-SHHHHHHHHHHHH----HHHHHHHHCT-THHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHH----HHHHHHHHHHHHhccccchhHHHHHHHHhc----cccccccccc-cchhhHHHHHHHHHhh
Q ss_pred HHHHH---CCCCCCHHHHHHHHHHHH-----HcCCHhHHHHHHHHhhh
Q 005474 435 NEMLE---AGFEPNLFVLTSLIQCYG-----KAQRTDDVVRALNRLPE 474 (695)
Q Consensus 435 ~~m~~---~g~~p~~~~~~~li~~~~-----~~g~~~~A~~~~~~m~~ 474 (695)
++..+ ..+.|...++..++--|. ..|+.++|+++-++..+
T Consensus 150 ~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 150 EEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred hhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 428
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=32.28 E-value=1.6e+02 Score=23.08 Aligned_cols=54 Identities=28% Similarity=0.239 Sum_probs=39.7
Q ss_pred HHHHHhhhhcchhhHHHHHHHHHHhcc-cCccccchHHHHHHHHhcCCHHHHHHHH
Q 005474 516 VVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYCNCLIDLCVNLNLLENACKLL 570 (695)
Q Consensus 516 ~~~~l~~~~~~~g~~~~eA~~l~~~~~-~~~~~~~~~~L~~~~~~~g~~~~A~~~l 570 (695)
.++.+.+-|...| ..+.+.++++.-. .+....+...|+.++..++.-.-|+.++
T Consensus 34 ~ID~I~~~y~r~g-L~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 34 AIDNLAYEYDREG-LYEQAYQLLRRFIQSEGKKATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred HHHHHHhhccccc-HHHHHHHHHHHHHHhccccchHHHHHHHHHHccchHHHHHHh
Confidence 4455555555556 8899999887653 3455578899999999999888787765
No 429
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=31.75 E-value=4.7e+02 Score=25.08 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=24.4
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 005474 302 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 340 (695)
Q Consensus 302 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 340 (695)
.|.......++..|. .+++++|.+++.++-+.|+.|..
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 355555556665543 45677777777777777776544
No 430
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.75 E-value=2.6e+02 Score=22.04 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=5.3
Q ss_pred CChHHHHHHHHHHH
Q 005474 284 GNFDGCLNVYEEMK 297 (695)
Q Consensus 284 g~~~~A~~~~~~m~ 297 (695)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33333333333333
No 431
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.13 E-value=2.6e+02 Score=21.98 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=5.8
Q ss_pred CCHHHHHHHHHHhH
Q 005474 389 GYTDEAFEIFEDMK 402 (695)
Q Consensus 389 g~~~~A~~~~~~m~ 402 (695)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444443
No 432
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=30.93 E-value=4.9e+02 Score=26.43 Aligned_cols=87 Identities=15% Similarity=0.247 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHH--HHHHHHHcCChhHHHHHHHhchh-----CCCCCCHH-
Q 005474 168 YNVTMKVFRKCRDLDKAERLFDDMLDR---GVKPDNVTFST--LISCARMNNLPNKAVEWFERMPS-----FGCDPDAL- 236 (695)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~- 236 (695)
...++.+.-+.++.++|++.++++.+. --.|+.+.|-. ..+++...|+..++.+.+++..+ .|+++++.
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 445556666667888888888888643 23456665543 34466778888888888887766 56777544
Q ss_pred HHHHHHHHHHh-cCCHHHH
Q 005474 237 TYSSMIDAYGR-AGNVEMA 254 (695)
Q Consensus 237 ~~~~li~~~~~-~g~~~~A 254 (695)
.|..+-.-|.+ .|++...
T Consensus 158 ~fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 158 SFYSLSSQYYKKIGDFASY 176 (380)
T ss_pred hHHHHHHHHHHHHHhHHHH
Confidence 35555444444 3665544
No 433
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=30.69 E-value=1.9e+02 Score=23.91 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=23.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005474 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLI 207 (695)
Q Consensus 171 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 207 (695)
+|+.+.++...++|+++.+.|.++| ..+...-+.|-
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr 102 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELR 102 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4555677778888888888888776 33444444433
No 434
>PRK09857 putative transposase; Provisional
Probab=30.68 E-value=5.4e+02 Score=25.69 Aligned_cols=65 Identities=8% Similarity=0.086 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhhCCCCCC
Q 005474 415 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 480 (695)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 480 (695)
..++.-..+.++.++..++++.+.+. ........-++..-+.+.|.-++++++.++|...|+..+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444556655556666555543 222223333455556666666677777888877777655
No 435
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.26 E-value=4.2e+02 Score=26.44 Aligned_cols=52 Identities=12% Similarity=0.260 Sum_probs=28.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 241 MIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
++..+.+.++.....+.+..+.. ...-...+..+...|++.+|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444444444444444444432 23334455666677777777777776654
No 436
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=29.95 E-value=3.2e+02 Score=22.55 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=8.1
Q ss_pred hcCCHHHHHHHHHHhHhCC
Q 005474 387 DVGYTDEAFEIFEDMKSSE 405 (695)
Q Consensus 387 ~~g~~~~A~~~~~~m~~~~ 405 (695)
+.|-.+++...+.++...|
T Consensus 81 klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 81 KLGLASALESRLTRLASSG 99 (116)
T ss_dssp HCT-HHHHHHHHHHHCT-S
T ss_pred hhccHHHHHHHHHHHHhCC
Confidence 4444555555554444433
No 437
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.86 E-value=1.1e+02 Score=22.49 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 005474 233 PDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT 282 (695)
Q Consensus 233 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 282 (695)
|....++.++..+++..-++.++..++++.+.| ..+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344455666666666656666666666666655 2455555544444443
No 438
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.37 E-value=6.1e+02 Score=25.63 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005474 196 VKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAF 255 (695)
Q Consensus 196 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 255 (695)
+......|..++.+|+...-.++++..+++-.+.|. .+...|--=++.+.|..-+-.|.
T Consensus 295 ~~~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~-i~l~~yLr~VR~lsReQF~~rat 353 (365)
T KOG2391|consen 295 IECTAPLYKQILECYALDLAIEDAIYSLGKSLRDGV-IDLDQYLRHVRLLSREQFILRAT 353 (365)
T ss_pred hhccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCe-eeHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777788777777777778877777663 35666665566666555444443
No 439
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.31 E-value=3.1e+02 Score=27.37 Aligned_cols=43 Identities=5% Similarity=0.257 Sum_probs=25.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005474 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 368 (695)
Q Consensus 326 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 368 (695)
++++.|.+.++.|.-..+..+.-.+.+.=.+.+.+.+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555555556666666665555555555556666666666554
No 440
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=29.11 E-value=3.5e+02 Score=28.54 Aligned_cols=40 Identities=5% Similarity=0.003 Sum_probs=20.5
Q ss_pred hhCCCCCCHH--HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCC
Q 005474 473 PELGITPDDR--FCGCLLNVMTQTPK-EELGKLVECVEKSNSK 512 (695)
Q Consensus 473 ~~~g~~pd~~--~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~ 512 (695)
-...++|.+. +...-+..+.+.++ ..|..+-+++++++|.
T Consensus 290 Thc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 290 THCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp CCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 3444555443 45555556666666 6666666666666654
No 441
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.96 E-value=5.6e+02 Score=25.04 Aligned_cols=202 Identities=14% Similarity=0.161 Sum_probs=125.1
Q ss_pred cCCCCCHHHHHHHHHH-HHHcCChhHHHHHHHhchhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CC
Q 005474 194 RGVKPDNVTFSTLISC-ARMNNLPNKAVEWFERMPSFGCDPDA---LTYSSMIDAYGRAGNVEMAFGLYDRARNE---KW 266 (695)
Q Consensus 194 ~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~ 266 (695)
.+-+||+..-|..-.+ -.+...+++|+.-|++..+..-+... .....+|..+.+.|++++....|.++..- .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3456776654443331 12455889999999998774322233 34456788899999999999999888631 11
Q ss_pred --CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-
Q 005474 267 --RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP- 338 (695)
Q Consensus 267 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~- 338 (695)
.-+....|+++.......+.+--.+.|+.-.+. .-..|. .|-..|...|...+.+....+++.++...--..
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 234556778887777666666666665543221 000122 233456777888899999999999987642111
Q ss_pred ---C-------HHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----HhcCCHHHHHH
Q 005474 339 ---N-------WNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLAMC-----ADVGYTDEAFE 396 (695)
Q Consensus 339 ---~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~-----~~~g~~~~A~~ 396 (695)
| ...|..-|.+|...++-..-..+|++.... .--|.+.... +|+-| .+.|.+++|..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 1 345777788888888888888888876542 2223444333 34433 34566776653
No 442
>PRK10941 hypothetical protein; Provisional
Probab=28.90 E-value=5.7e+02 Score=25.17 Aligned_cols=55 Identities=9% Similarity=0.084 Sum_probs=26.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 417 MITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 417 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
+-.+|.+.++++.|.++.+.+... .| +..-+.--.-.|.+.|.+..|..-++..+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 334455555555555555555542 23 22233333334555555555555555544
No 443
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.81 E-value=4.6e+02 Score=26.15 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=31.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005474 276 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 333 (695)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 333 (695)
++..+.+.++..+.++.++.+.. ...-...+..+...|++..|.+++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44555555555555555555542 33344456666777888888877776654
No 444
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.78 E-value=6.6e+02 Score=25.83 Aligned_cols=251 Identities=12% Similarity=0.047 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHH
Q 005474 198 PDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRID---PNAFS 274 (695)
Q Consensus 198 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~ 274 (695)
|+..+.-.+++-|....+.+....+-..... +.+.+-.++.+.+......++..+.+..=.+.+ .....
T Consensus 73 ~~~~~li~~~~~FV~~~n~eqlr~as~~f~~--------lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~ 144 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNGEQLRLASEIFFP--------LCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHA 144 (422)
T ss_pred CCHHHHHHHHHHHHHhcChHHHhhHHHHHHH--------HHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHH
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC------CCCCHHhHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005474 275 TLIKLYGTAGNFDGCLNVYEEMKAIG------VKPNMITYNNLLDTMGRAK--RPWQVKTIYKEMTDNGLSPNWNTYASL 346 (695)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~l 346 (695)
.++..+.+.+++.-++..++.-...- .+|.....-.+-.+|.-.| +++.|..++....-. |....-...
T Consensus 145 ~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~---Pa~~vs~~h 221 (422)
T KOG2582|consen 145 DLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT---PAMAVSHIH 221 (422)
T ss_pred HHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc---chhHHHHHH
Q ss_pred HHHHHh--------CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHH
Q 005474 347 LRAYGR--------ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418 (695)
Q Consensus 347 i~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 418 (695)
+++|-+ .|+.-..-+.=.....+-.+|-...|.-+.++|.+...-+ ++.+.....
T Consensus 222 lEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~e-----Lr~lVk~~~------------ 284 (422)
T KOG2582|consen 222 LEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTE-----LRTLVKKHS------------ 284 (422)
T ss_pred HHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHH-----HHHHHHHHH------------
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHHcCCHhHHHHHHHHhhhCC
Q 005474 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL----IQCYGKAQRTDDVVRALNRLPELG 476 (695)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g 476 (695)
..+.+-++..-|......|.++++..=..+|.++ |.-....+..++|.+..-+|.+.|
T Consensus 285 ~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 285 ERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
No 445
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=28.58 E-value=4.8e+02 Score=24.16 Aligned_cols=17 Identities=12% Similarity=0.088 Sum_probs=10.6
Q ss_pred HHcCCHhHHHHHHHHhh
Q 005474 457 GKAQRTDDVVRALNRLP 473 (695)
Q Consensus 457 ~~~g~~~~A~~~~~~m~ 473 (695)
.+.|+++.|.++++-|.
T Consensus 132 l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 132 LRKGSFEEAERFLKFME 148 (204)
T ss_pred HHhccHHHHHHHHHHHH
Confidence 34566666666666665
No 446
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=28.57 E-value=2.9e+02 Score=21.67 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=27.3
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 256 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
++|+-....|+..|..+|..++....-+=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666667777777777666666555555556666666543
No 447
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.50 E-value=3.2e+02 Score=23.92 Aligned_cols=59 Identities=14% Similarity=0.273 Sum_probs=28.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005474 331 MTDNGLSPNWNTYASLLRAYGRA-RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390 (695)
Q Consensus 331 m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 390 (695)
+.+.|++.+..-. .++..+... +..-.|.++++.+.+.+...+..|..--+..+...|-
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 3344554443322 233333332 3445566666666666555555554445555555553
No 448
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=28.37 E-value=5.8e+02 Score=25.11 Aligned_cols=50 Identities=22% Similarity=0.269 Sum_probs=22.6
Q ss_pred cCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHhhCC
Q 005474 213 NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA----GNVEMAFGLYDRARNEK 265 (695)
Q Consensus 213 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~g 265 (695)
.+++..+.+.+......+ +......+...|... .+..+|..+|..+.+.|
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g 107 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG 107 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc
Confidence 455566666665555432 222333333333322 23455555555444433
No 449
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=28.28 E-value=2.9e+02 Score=21.64 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhch
Q 005474 186 RLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMP 227 (695)
Q Consensus 186 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 227 (695)
++|+-....|+..|...|..++..+.-+=-++...+++..|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 666666667777777777777766655555555555655554
No 450
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=28.04 E-value=4.9e+02 Score=24.10 Aligned_cols=16 Identities=25% Similarity=0.148 Sum_probs=7.9
Q ss_pred HhcCCHHHHHHHHHHH
Q 005474 246 GRAGNVEMAFGLYDRA 261 (695)
Q Consensus 246 ~~~g~~~~A~~~~~~~ 261 (695)
...|++++|.+-++++
T Consensus 40 ~H~~~~eeA~~~l~~a 55 (204)
T COG2178 40 LHRGDFEEAEKKLKKA 55 (204)
T ss_pred HHhccHHHHHHHHHHH
Confidence 3445555555544444
No 451
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=27.73 E-value=1e+02 Score=34.30 Aligned_cols=63 Identities=6% Similarity=0.148 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005474 234 DALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 298 (695)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 298 (695)
+...-.-++..|.+.|-.+.|.++.+.+-..- ....-|..-+.-+.+.|+...+-.+-+.+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555666667777777777766666554321 1223455556666677776666555555443
No 452
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=27.63 E-value=1e+02 Score=32.47 Aligned_cols=101 Identities=9% Similarity=0.031 Sum_probs=44.2
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 005474 384 MCADVGYTDEAFEIFEDMKSSENCQPDSWTF-SSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQR 461 (695)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 461 (695)
.+.+.+.++.|..++.++.+. .||-..| ..=..++.+.+++..|+.=+..+++.. |+ ...|--=..++.+.++
T Consensus 13 ~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHH
Confidence 334445556666666555553 2333222 222244555555555555555554422 21 1122222233333444
Q ss_pred HhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 005474 462 TDDVVRALNRLPELGITPDDRFCGCLLNVM 491 (695)
Q Consensus 462 ~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~ 491 (695)
+.+|+..|+... -+.|+..-+...+.-|
T Consensus 88 ~~~A~~~l~~~~--~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVK--KLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhh--hcCcCcHHHHHHHHHH
Confidence 444444444433 2345555444444433
No 453
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.49 E-value=3.3e+02 Score=24.56 Aligned_cols=36 Identities=11% Similarity=0.038 Sum_probs=17.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005474 354 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 389 (695)
Q Consensus 354 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 389 (695)
...-.|.++++.+.+.+...+..|..--+..+.+.|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 334445555555555554444444333444444444
No 454
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.36 E-value=2.9e+02 Score=30.62 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=61.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCC-CCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 005474 380 TLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVS------EAEAMFNEMLEAGFEPNLFVLTSL 452 (695)
Q Consensus 380 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~~~~~l 452 (695)
+|+.+|...|++..+.++++....... -+.-...||..|+.+.+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 799999999999999999998876431 0233556888888889999864 3444444443 55688899888
Q ss_pred HHHHHHcCCHhHHHHHHHHhh
Q 005474 453 IQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 453 i~~~~~~g~~~~A~~~~~~m~ 473 (695)
+.+-..--.-.-..-++.+++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 876555333333444445444
No 455
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=27.35 E-value=7.1e+02 Score=25.76 Aligned_cols=57 Identities=11% Similarity=0.118 Sum_probs=39.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH-hcCChHHHHHHHHHHHH
Q 005474 277 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG-RAKRPWQVKTIYKEMTD 333 (695)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~ 333 (695)
|..+.+.|.+..|+++.+-+......-|......+|+.|+ ++++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4566778888888888888887765546666666677654 56677767777666544
No 456
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.19 E-value=3.5e+02 Score=31.22 Aligned_cols=47 Identities=11% Similarity=-0.067 Sum_probs=30.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 421 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
+..+|+++.|++.-..+ .+..+|..|...-...|+.+-|...|++..
T Consensus 653 aLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred ehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 44567777666655443 355667777777777777777777766654
No 457
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=27.10 E-value=3.9e+02 Score=22.71 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHH
Q 005474 429 EAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALN 470 (695)
Q Consensus 429 ~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 470 (695)
+..++|..|...|+.-. ...|......+...|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35667777777766543 3445566666677777777777775
No 458
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=26.91 E-value=6.2e+02 Score=24.92 Aligned_cols=84 Identities=17% Similarity=0.172 Sum_probs=51.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHh----
Q 005474 176 RKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARM----NNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGR---- 247 (695)
Q Consensus 176 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---- 247 (695)
...+++..+...+......+. ......+...|.. ..+..+|.++|..+-+.| .......|...|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCc
Confidence 356788888888888776542 2333334444433 345778888888776655 33344445555544
Q ss_pred cCCHHHHHHHHHHHhhCC
Q 005474 248 AGNVEMAFGLYDRARNEK 265 (695)
Q Consensus 248 ~g~~~~A~~~~~~~~~~g 265 (695)
..+..+|...|++..+.|
T Consensus 126 ~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 126 PLDLVKALKYYEKAAKLG 143 (292)
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 236677777777777666
No 459
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=26.79 E-value=3.8e+02 Score=27.96 Aligned_cols=61 Identities=15% Similarity=0.220 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 412 WTFSSMITICSCRGKVSEAEAMFNEMLE--AGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
.+...|++...-.|+.....+.++.|.+ .|-.|. .+| -.+.-+|...|++.+|++.|-...
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666667776666666666654 233332 223 334557777788888888876554
No 460
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=26.78 E-value=7.5e+02 Score=25.82 Aligned_cols=15 Identities=7% Similarity=0.084 Sum_probs=7.9
Q ss_pred CChHHHHHHHHHHHH
Q 005474 354 RYGEDTLSVYREMKE 368 (695)
Q Consensus 354 g~~~~A~~~~~~m~~ 368 (695)
-++++|.+.++....
T Consensus 183 fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 183 FDHKEALEYLEKLLK 197 (379)
T ss_pred cCHHHHHHHHHHHHH
Confidence 345555555555444
No 461
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=26.57 E-value=9.2e+02 Score=26.79 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005474 272 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 335 (695)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 335 (695)
.|..|+..+. .=+.+.-.++++++.. . + ...+..++++....|-.....-+.+.+....
T Consensus 312 ~f~~lv~~lR-~~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~ 370 (574)
T smart00638 312 KFLRLVRLLR-TLSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKK 370 (574)
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 4444444433 2344555555555543 1 1 4455666666666666555555554444433
No 462
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=26.43 E-value=3.7e+02 Score=22.13 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhh
Q 005474 448 VLTSLIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
-|..++..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478899999999999999999999876
No 463
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=26.28 E-value=7.9e+02 Score=28.04 Aligned_cols=46 Identities=7% Similarity=0.135 Sum_probs=31.7
Q ss_pred hHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 005474 356 GEDTLSVYREM-KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 403 (695)
Q Consensus 356 ~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 403 (695)
.++....+..+ .+.|+..+......++... .|++..++.+++++..
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 35555555554 3457777877777666554 5899999999987765
No 464
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=25.92 E-value=6.9e+02 Score=27.26 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=13.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 005474 275 TLIKLYGTAGNFDGCLNVYEEM 296 (695)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~m 296 (695)
.++.-|.+.+++++|..++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 4555666666666666666655
No 465
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=25.86 E-value=3.4e+02 Score=23.74 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=31.3
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 005474 293 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 354 (695)
Q Consensus 293 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 354 (695)
.+.+++.|++++. --..++..+...++.-.|.++++++.+.+...+..|...-++.+...|
T Consensus 9 ~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444555554332 233455555656555666777777666655544444333444444433
No 466
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=25.76 E-value=6.8e+02 Score=25.03 Aligned_cols=80 Identities=15% Similarity=-0.008 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005474 322 WQVKTIYKEMTDNGL----SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397 (695)
Q Consensus 322 ~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 397 (695)
..|.+.|+.....+. ..+......++....+.|..+.-..+++..... .+......++.+++...+.+...++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHH
Confidence 344555555544311 223334444444555555544433333333322 2444555566666666666666666
Q ss_pred HHHhHhC
Q 005474 398 FEDMKSS 404 (695)
Q Consensus 398 ~~~m~~~ 404 (695)
++.+...
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 6666554
No 467
>PHA03100 ankyrin repeat protein; Provisional
Probab=25.35 E-value=4.7e+02 Score=28.13 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=11.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 005474 174 VFRKCRDLDKAERLFDDMLDRGVKPDN 200 (695)
Q Consensus 174 ~~~~~g~~~~A~~l~~~m~~~g~~p~~ 200 (695)
...+.|+.+ +++.+.+.|..++.
T Consensus 41 ~A~~~~~~~----ivk~Ll~~g~~~~~ 63 (480)
T PHA03100 41 LAKEARNID----VVKILLDNGADINS 63 (480)
T ss_pred hhhccCCHH----HHHHHHHcCCCCCC
Confidence 334555543 33444455665543
No 468
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.78 E-value=8.2e+02 Score=25.61 Aligned_cols=61 Identities=23% Similarity=0.242 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005474 237 TYSSMIDAYGRAGNVEMAFGLYDRARNEKW--RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 297 (695)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 297 (695)
.+.-+.+.|..+|+++.|++.|.+...--- ...+..|-.+|..-.-.|+|.....+..+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 344455555556666666665555433210 1112233333444444444444444444443
No 469
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=24.50 E-value=8.2e+02 Score=25.50 Aligned_cols=54 Identities=17% Similarity=0.092 Sum_probs=34.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHH--HcCChhHHHHHHHhc
Q 005474 173 KVFRKCRDLDKAERLFDDMLDRGVKPDNVTFST----LISCAR--MNNLPNKAVEWFERM 226 (695)
Q Consensus 173 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~----li~~~~--~~g~~~~A~~~~~~m 226 (695)
..+.+.+++..|.++|+++.++...++...+-. +..+|. ..-++++|.+.++.+
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~ 197 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDP 197 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhc
Confidence 345677889999999999888755544443222 223333 244667777777753
No 470
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.32 E-value=2.8e+02 Score=21.31 Aligned_cols=25 Identities=20% Similarity=0.531 Sum_probs=16.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 005474 171 TMKVFRKCRDLDKAERLFDDMLDRG 195 (695)
Q Consensus 171 li~~~~~~g~~~~A~~l~~~m~~~g 195 (695)
+++.+.++.-.++|+++++.|.++|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4455666666677777777776665
No 471
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=24.27 E-value=6.3e+02 Score=26.58 Aligned_cols=60 Identities=10% Similarity=0.136 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--C----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005474 414 FSSMITICSCRGKVSEAEAMFNEMLE--A----GFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLP 473 (695)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~--~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (695)
...|++..+-.|++..|+++++.+.- . .+.+ .+.+|--+.-+|...+++.+|++.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777888887777765531 1 1122 34566677778889999999999988754
No 472
>PRK09857 putative transposase; Provisional
Probab=24.25 E-value=5.1e+02 Score=25.87 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=32.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 005474 381 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 445 (695)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 445 (695)
++.-..+.|+.++-.++++.+.+.. .......-++..-+.+.|.-+++.++..+|...|+..+
T Consensus 212 ll~Yi~~~~~~~~~~~~~~~l~~~~--~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 212 LFNYILQTGDAVRFNDFIDGVAERS--PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHhhccccchHHHHHHHHHHhC--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333334455555555555554431 22222333444555555555667777777777776544
No 473
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=24.17 E-value=3.7e+02 Score=26.85 Aligned_cols=72 Identities=14% Similarity=0.258 Sum_probs=50.3
Q ss_pred HHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----------cCChHHH
Q 005474 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT----------AGNFDGC 289 (695)
Q Consensus 220 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----------~g~~~~A 289 (695)
.++++.|.+.++.|.-..+.-+.-.+.+.=.+...+.+++.+.. |..-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 45677777777888777777777777777777888888888775 33335555555543 5888888
Q ss_pred HHHHHHH
Q 005474 290 LNVYEEM 296 (695)
Q Consensus 290 ~~~~~~m 296 (695)
.++++..
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 8877654
No 474
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=24.16 E-value=2.6e+02 Score=19.57 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=5.6
Q ss_pred HhcCCHHHHHHHHHHh
Q 005474 386 ADVGYTDEAFEIFEDM 401 (695)
Q Consensus 386 ~~~g~~~~A~~~~~~m 401 (695)
.+.|++++|.+..+.+
T Consensus 12 ykl~~Y~~A~~~~~~l 27 (53)
T PF14853_consen 12 YKLGEYEKARRYCDAL 27 (53)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHH
Confidence 3333333333333333
No 475
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.49 E-value=60 Score=32.59 Aligned_cols=80 Identities=14% Similarity=0.027 Sum_probs=45.1
Q ss_pred HcCCHhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHH
Q 005474 458 KAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT 535 (695)
Q Consensus 458 ~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~ 535 (695)
..|.++.|+..|...++. .| ....|.-=-+++.+.+. ..+.+-+....+++|+...-+..-+++....| .+++|.
T Consensus 126 n~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg-~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG-NWEEAA 202 (377)
T ss_pred cCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh-chHHHH
Confidence 456677777777776644 33 33344444445555555 66677777777777776554444444333335 455555
Q ss_pred HHHHh
Q 005474 536 ELFNS 540 (695)
Q Consensus 536 ~l~~~ 540 (695)
..++.
T Consensus 203 ~dl~~ 207 (377)
T KOG1308|consen 203 HDLAL 207 (377)
T ss_pred HHHHH
Confidence 55543
No 476
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.46 E-value=1.8e+02 Score=33.76 Aligned_cols=72 Identities=24% Similarity=0.325 Sum_probs=52.0
Q ss_pred ccceeeccccCChHHHHHHHHHHHHHHHHHHhcCCCCCCeeEEEeecccccccchhHHHHHHHHhhh--cCCCCccCCC-
Q 005474 587 PTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKE--LNAPFHDSPD- 663 (695)
Q Consensus 587 ~~~w~~~l~~~s~G~~~~a~~~w~~~~~~~~~~g~~~p~~~~i~~g~~~~~~~~~~~~~~i~~~l~~--~~~pf~~~~~- 663 (695)
...+.+|||++....|...+..|+..... .| -..+.|+.|.|. ..|++.|...|+. ...-|+.++.
T Consensus 702 ~~~~~lDL~G~~~eeA~~~l~~fl~~a~~---~g---~~~v~IIHGkGt-----G~Lr~~v~~~L~~~~~V~~f~~a~~~ 770 (782)
T PRK00409 702 TVSLELDLRGMRYEEALERLDKYLDDALL---AG---YGEVLIIHGKGT-----GKLRKGVQEFLKKHPSVKSFRDAPPN 770 (782)
T ss_pred CCCceEECCCCCHHHHHHHHHHHHHHHHH---cC---CCEEEEEcCCCh-----hHHHHHHHHHHcCCCceeeeeecCcc
Confidence 45678999999999999999988777544 33 234789999886 4689999999986 4444555554
Q ss_pred --CcceEE
Q 005474 664 --KVGWFL 669 (695)
Q Consensus 664 --~~g~~~ 669 (695)
+.|..+
T Consensus 771 ~GG~Gat~ 778 (782)
T PRK00409 771 EGGFGVTI 778 (782)
T ss_pred cCCCeEEE
Confidence 345444
No 477
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=22.92 E-value=1.5e+02 Score=31.39 Aligned_cols=106 Identities=12% Similarity=0.006 Sum_probs=66.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcC
Q 005474 347 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT-LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425 (695)
Q Consensus 347 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 425 (695)
..-+.+.+.++.|..++.+.++. .|+...|-+ =..++.+.+++..|+.=+....+.. +-....|..=..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 44456677888888888888876 344444433 2367788888888887777766643 122223333334445556
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005474 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 458 (695)
Q Consensus 426 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 458 (695)
.+.+|...|+.... +.|+..-...++.-|-+
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 66677777766665 56777777777765544
No 478
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=22.88 E-value=1.5e+02 Score=18.75 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=17.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHH
Q 005474 550 CNCLIDLCVNLNLLENACKLLE 571 (695)
Q Consensus 550 ~~~L~~~~~~~g~~~~A~~~l~ 571 (695)
|=+++-.+..+|++++|+.+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3467788999999999999954
No 479
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=22.55 E-value=8.3e+02 Score=24.88 Aligned_cols=87 Identities=17% Similarity=0.252 Sum_probs=58.9
Q ss_pred HHHHHHHHcCChhHHHHHHHhchhC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCCHH-HH
Q 005474 205 TLISCARMNNLPNKAVEWFERMPSF---GCDPDALTYS--SMIDAYGRAGNVEMAFGLYDRARN-----EKWRIDPN-AF 273 (695)
Q Consensus 205 ~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~-----~g~~~~~~-~~ 273 (695)
.++...-+.++.++|+++++++.+. .-.|+.+.|. .+.+.+...|+..++.+++++..+ .++++++. .|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3444555667899999999988652 2356776664 455667778999999999998877 57777554 46
Q ss_pred HHHHHHHH-HcCChHHHHH
Q 005474 274 STLIKLYG-TAGNFDGCLN 291 (695)
Q Consensus 274 ~~li~~~~-~~g~~~~A~~ 291 (695)
..+-.-|. +.|++.....
T Consensus 160 Y~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 66655554 4566665443
No 480
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.36 E-value=5.5e+02 Score=24.82 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005474 415 SSMITICSCRGKVSEAEAMFNEMLE----AGF-EPNLFVLTSLIQCYGKAQRTDDVVRALNRL 472 (695)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 472 (695)
-.+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.++.+.+-=+|
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456668888888888888888753 222 223445566666777777777776665444
No 481
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.13 E-value=4.9e+02 Score=23.42 Aligned_cols=20 Identities=0% Similarity=0.019 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHcCCCCCH
Q 005474 286 FDGCLNVYEEMKAIGVKPNM 305 (695)
Q Consensus 286 ~~~A~~~~~~m~~~g~~p~~ 305 (695)
.-.|.++++.+.+.+...+.
T Consensus 41 hlSa~eI~~~L~~~~~~is~ 60 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKP 60 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCc
Confidence 33444444444444433333
No 482
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=21.94 E-value=2.6e+02 Score=29.73 Aligned_cols=48 Identities=17% Similarity=0.105 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHhcccC--cc---------ccchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005474 527 EGDFKKEATELFNSISKD--VK---------KAYCNCLIDLCVNLNLLENACKLLELGLT 575 (695)
Q Consensus 527 ~g~~~~eA~~l~~~~~~~--~~---------~~~~~~L~~~~~~~g~~~~A~~~l~~~~~ 575 (695)
.| ....|.+++...... +. -.+||.|+-+.++.|.+..+..+|.++++
T Consensus 253 ~g-n~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~ 311 (696)
T KOG2471|consen 253 HG-NHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR 311 (696)
T ss_pred hc-chHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH
Confidence 35 567777776544221 11 12579999999999999999999999984
No 483
>PF13934 ELYS: Nuclear pore complex assembly
Probab=21.85 E-value=7e+02 Score=23.75 Aligned_cols=169 Identities=11% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 005474 392 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 471 (695)
Q Consensus 392 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 471 (695)
.+...+++.+...+ ..+..-...+...+...+.... .....+....-.-|....-.+-.-.+..++++++|+..+
T Consensus 27 ~~L~~Ll~~i~~~~--~~~~~K~~l~~YlLlD~~~~~~-~~~~~~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L-- 101 (226)
T PF13934_consen 27 NDLRALLDLILSSN--VSLLKKHSLFYYLLLDLDDTRP-SELAESFARAFGIPPKYIKFIQGFWLLDHGDFEEALELL-- 101 (226)
T ss_pred HHHHHHHHHHhcCC--cCHHHhHHHHHHHHHhcCcccc-ccHHHHHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHh--
Q ss_pred hhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcccCccccch
Q 005474 472 LPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYC 550 (695)
Q Consensus 472 m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~~~~~~~~~ 550 (695)
.........-..++.++...|. ..|.++++.+...-.....+.-.+.. ..++ .+.||..+.+..........+
T Consensus 102 ---~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~--La~~-~v~EAf~~~R~~~~~~~~~l~ 175 (226)
T PF13934_consen 102 ---SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA--LANG-LVTEAFSFQRSYPDELRRRLF 175 (226)
T ss_pred ---CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH--HHcC-CHHHHHHHHHhCchhhhHHHH
Q ss_pred HHHHHHHHhcC-CHHHHHHHHH
Q 005474 551 NCLIDLCVNLN-LLENACKLLE 571 (695)
Q Consensus 551 ~~L~~~~~~~g-~~~~A~~~l~ 571 (695)
..++..|.... +...+.++++
T Consensus 176 e~l~~~~~~~~~~~~~~~~Ll~ 197 (226)
T PF13934_consen 176 EQLLEHCLEECARSGRLDELLS 197 (226)
T ss_pred HHHHHHHHHHhhhhhHHHHHHh
No 484
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=21.73 E-value=7.6e+02 Score=24.11 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHH
Q 005474 269 DPNAFSTLIKLYGTAGNFDGCLNVY 293 (695)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~ 293 (695)
|+.....+...|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5566666667777777777666555
No 485
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=21.62 E-value=5.8e+02 Score=26.02 Aligned_cols=76 Identities=8% Similarity=0.165 Sum_probs=46.8
Q ss_pred HHHHHhhCChHHHHHHHHHHHhcCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005474 136 VIILNNMTNPDTAALALTYFTNKLK-ASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCAR 211 (695)
Q Consensus 136 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 211 (695)
+.+++.=...++.+..+..+....+ ...-+.-|-.+++.....|.++.++.+|++.+..|..|-...-.+++..+.
T Consensus 110 l~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 110 LNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3333333334555555555444321 111234577788888888888888888888888888876666666665543
No 486
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=21.53 E-value=2.5e+02 Score=20.70 Aligned_cols=46 Identities=7% Similarity=0.083 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005474 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 457 (695)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 457 (695)
...++.++..+++..-++++...+.++.+.|. -+..+|.--++.++
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 33444444444444444444444444444432 23333433333333
No 487
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=21.13 E-value=9.5e+02 Score=25.02 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=12.4
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 005474 311 LLDTMGRAKRPWQVKTIYKEM 331 (695)
Q Consensus 311 li~~~~~~g~~~~a~~~~~~m 331 (695)
|...+-..|++++|..++.++
T Consensus 137 L~~ike~~Gdi~~Aa~il~el 157 (439)
T KOG1498|consen 137 LAKIKEEQGDIAEAADILCEL 157 (439)
T ss_pred HHHHHHHcCCHHHHHHHHHhc
Confidence 334455667777776666554
No 488
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=21.09 E-value=67 Score=27.49 Aligned_cols=33 Identities=30% Similarity=0.550 Sum_probs=26.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005474 175 FRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISC 209 (695)
Q Consensus 175 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 209 (695)
+..-|.-.+|..+|+.|+++|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 44557778899999999999998874 6777754
No 489
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=20.98 E-value=1e+03 Score=25.29 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=44.6
Q ss_pred HHHhhhhcchhhHHHHHHHHHHhcccC--ccccchHHHHHHHHhcCCHHHHHHHHHHHHHcCcc
Q 005474 518 KLLLEEQDIEGDFKKEATELFNSISKD--VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVY 579 (695)
Q Consensus 518 ~~l~~~~~~~g~~~~eA~~l~~~~~~~--~~~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~~ 579 (695)
+.|...|...| ...||...++.+..+ ....++.+++-+.-+.|+-+.-..+++.....|+.
T Consensus 513 ~~LLeEY~~~G-disEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI 575 (645)
T KOG0403|consen 513 DMLLEEYELSG-DISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI 575 (645)
T ss_pred HHHHHHHHhcc-chHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce
Confidence 34444444445 889999999887543 44558899999999999988888888877665543
No 490
>PF10926 DUF2800: Protein of unknown function (DUF2800); InterPro: IPR021229 This entry is represented by Bacteriophage APSE-1, protein 51. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins.
Probab=20.95 E-value=2.4e+02 Score=29.26 Aligned_cols=53 Identities=23% Similarity=0.346 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHH----HhcCCCCCCeeEEEeecccccccchhHHHHHHHHhhhcCCCC
Q 005474 602 ALTALHIWINDLSKA----LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPF 658 (695)
Q Consensus 602 ~~~a~~~w~~~~~~~----~~~g~~~p~~~~i~~g~~~~~~~~~~~~~~i~~~l~~~~~pf 658 (695)
+...+..|+++++.. ...|++.|+. .++.|.|...+.+ -+.+.+.|+..+-+.
T Consensus 264 ~~~~l~~w~~~v~~~a~~~~~~G~~~pG~-KlVeGRs~R~~~D---e~~a~~~L~~~g~~~ 320 (372)
T PF10926_consen 264 KADELESWAKDVKEYALAEALNGEEVPGW-KLVEGRSNRKWTD---EDAAAEILKAAGYKE 320 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCccCCe-eEEeccCccccCC---HHHHHHHHHHCCCCH
Confidence 446788999999877 5669999995 7888888877764 244555666666544
No 491
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=20.84 E-value=7.6e+02 Score=26.53 Aligned_cols=174 Identities=17% Similarity=0.136 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhCC-ChH
Q 005474 283 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT----YASLLRAYGRAR-YGE 357 (695)
Q Consensus 283 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----~~~li~~~~~~g-~~~ 357 (695)
..++++|++..++.++.+-. ..-|-...|.++|.++.+.|+.||..| ....+.+|+-.| .++
T Consensus 207 ~~~ldeal~~~~~a~~~~~~-------------~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~e 273 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKP-------------ISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVE 273 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCc-------------eEEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHH
Q ss_pred HHHHH-------HHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhHhCCCCCCCHHHHHHHHHHH-------
Q 005474 358 DTLSV-------YREMKEKGMQLSVTLYNTLLAMCADVGY--TDEAFEIFEDMKSSENCQPDSWTFSSMITIC------- 421 (695)
Q Consensus 358 ~A~~~-------~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~------- 421 (695)
++.++ |.++.+. +..-....|..+.+.|- ++-.-.+..+..+.| ..+.+.|-..+..|
T Consensus 274 e~~~lr~~dp~~~~~~~~~----Sm~rhv~Am~~~~~~Ga~~fDYGN~~r~~a~~aG--~~~aF~~PgfV~~~irplF~~ 347 (545)
T TIGR01228 274 DADKLRQEEPEAYVKAAKQ----SMAKHVRAMLAFQKQGSVTFDYGNNIRQVAKEEG--VEDAFDFPGFVPAYIRPLFCR 347 (545)
T ss_pred HHHHHHHhCHHHHHHHHHH----HHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHcC--ccccCCCCCchhhhcchhhhC
Q ss_pred --------HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--------------HHHcCCHhHHHHHHHHhhhCC
Q 005474 422 --------SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC--------------YGKAQRTDDVVRALNRLPELG 476 (695)
Q Consensus 422 --------~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--------------~~~~g~~~~A~~~~~~m~~~g 476 (695)
|-.|+.+.-.+.=+.+.+. +++|...++-+=.+ |.-.|.-.++-..|++|+..|
T Consensus 348 G~GPFRWvaLSGdpeDi~~TD~~~~e~-~~~~~~~~~WI~~A~e~~~fqGlpARI~wlg~~eR~~~~l~fNe~V~~G 423 (545)
T TIGR01228 348 GKGPFRWVALSGDPADIYRTDAAVKEL-FPEDAHLHRWIDMAQERVSFQGLPARICWLGYGERAKLGLAINEMVRSG 423 (545)
T ss_pred cCCCceeEecCCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHhcCcccCCchhhhhcCccHHHHHHHHHHHHHHcC
No 492
>PRK13342 recombination factor protein RarA; Reviewed
Probab=20.62 E-value=1e+03 Score=25.14 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=22.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005474 353 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 387 (695)
Q Consensus 353 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 387 (695)
..+.+.|+.++..|.+.|..|....-..++.++..
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46777788888888777766655444444444333
No 493
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.24 E-value=2.4e+02 Score=23.27 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=22.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005474 348 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 390 (695)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 390 (695)
......+..-.|.++++.+.+.+...+..|..-.++.+.+.|-
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3333334444556666666665555555555445555555554
No 494
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.17 E-value=1e+03 Score=24.98 Aligned_cols=167 Identities=13% Similarity=0.130 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHHHHHHH
Q 005474 341 NTYASLLRAYGRARYGEDTLSVYREMKEKGM--QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 418 (695)
Q Consensus 341 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 418 (695)
..+.-+.+.|..+|+++.|++.|.+.++.-. +-....|-.+|..-...|++.....+..+... .|+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s----t~~~------- 219 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES----TPDA------- 219 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh----Cchh-------
Confidence 3455566677777777777777776544211 11122333444444455555555555554443 1210
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhh-h-----CCCCCCHHHHHHHHHHHh
Q 005474 419 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP-E-----LGITPDDRFCGCLLNVMT 492 (695)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-----~g~~pd~~~~~~ll~~~~ 492 (695)
+.... ..+.+-...+..+.....+ ++..|.+.|-... + .=+.|..++....+.++.
T Consensus 220 ---------------~~~~~-q~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALA 281 (466)
T KOG0686|consen 220 ---------------NENLA-QEVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALA 281 (466)
T ss_pred ---------------hhhHH-HhcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhc
Confidence 00000 0123445555555554444 6777776665443 1 124565555555555666
Q ss_pred cCCHHHHH------HHHHHHHHcCCChhHHHHHHhhhhcchhhHHHHHHHHHHhcc
Q 005474 493 QTPKEELG------KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 542 (695)
Q Consensus 493 ~~~~~~a~------~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~ 542 (695)
--+..+.. ..|+...+..|..-. +|+..+. + .+....++++++.
T Consensus 282 tfdr~~Lk~~vi~n~~Fk~flel~Pqlr~---il~~fy~--s-ky~~cl~~L~~~k 331 (466)
T KOG0686|consen 282 TFDRQDLKLNVIKNESFKLFLELEPQLRE---ILFKFYS--S-KYASCLELLREIK 331 (466)
T ss_pred cCCHHHHHHHHHcchhhhhHHhcChHHHH---HHHHHhh--h-hHHHHHHHHHHhc
Confidence 55552222 145556667775443 3433332 2 5566666666664
No 495
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=20.15 E-value=1.1e+03 Score=25.45 Aligned_cols=279 Identities=11% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc-----C-CHHHHH
Q 005474 182 DKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRA-----G-NVEMAF 255 (695)
Q Consensus 182 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g-~~~~A~ 255 (695)
+.|.+.++-..+. +...+...-...--.-+.+...++|+...+ .-++...|+..|..|... | .+..-.
T Consensus 268 ~laqr~l~i~~~t----dl~~~~~~~~~~~~~~k~s~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~ 341 (568)
T KOG2396|consen 268 DLAQRELEILSQT----DLQHTDNQAKAVEVGSKESRCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTM 341 (568)
T ss_pred HHHHHHHHHHHHh----hccchhhhhhchhcchhHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc--CChHHHHHHHHHHHH
Q 005474 256 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA--KRPWQVKTIYKEMTD 333 (695)
Q Consensus 256 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~ 333 (695)
.+++...+.+ .....-+......+.......++..+-..+...++.-+...|-.-+....+. .---.-.++|.....
T Consensus 342 ~~~~~~~~~~-~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~ 420 (568)
T KOG2396|consen 342 CVFRKAHELK-LLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRK 420 (568)
T ss_pred HHHHHHHHhc-ccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCCHHH
Q 005474 334 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 413 (695)
Q Consensus 334 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~ 413 (695)
.-..+-...|+... -...-+...-..++..+...+-.-....-+.+++-+-+.|-..+|..++..+.... ++....
T Consensus 421 ~~~s~~~~~w~s~~--~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp--p~sl~l 496 (568)
T KOG2396|consen 421 QVCSELLISWASAS--EGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP--PFSLDL 496 (568)
T ss_pred HhcchhHHHHHHHh--hccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC--CccHHH
Q ss_pred HHHHHHH---HHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHhhh
Q 005474 414 FSSMITI---CSCRGKVSEAEAMFNEMLE-AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 414 ~~~li~~---~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
|..+|+. ...+| +..+..+++.|.. .| .|+..|--.+.--...|+.+.+-.++.+..+
T Consensus 497 ~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 497 FRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHH
No 496
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=20.11 E-value=3.5e+02 Score=19.61 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=6.9
Q ss_pred cCCHHHHHHHHHHHh
Q 005474 248 AGNVEMAFGLYDRAR 262 (695)
Q Consensus 248 ~g~~~~A~~~~~~~~ 262 (695)
.|++-+|.++++.+-
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 444555555555444
Done!