Query 005474
Match_columns 695
No_of_seqs 846 out of 4252
Neff 10.3
Searched_HMMs 29240
Date Tue Mar 26 18:41:24 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005474.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1980-1984//hhsearch_pdb/005474hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 279.5 37.5 424 139-577 94-580 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 276.4 42.5 434 162-615 81-579 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 234.1 25.1 185 167-351 28-221 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 232.6 26.2 207 182-388 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 199.3 45.6 372 140-524 10-383 (388)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 195.8 47.8 380 171-561 5-387 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 182.9 33.7 400 166-577 7-479 (514)
8 2gw1_A Mitochondrial precursor 1.0 1 1 172.3 38.2 397 138-546 15-481 (514)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 170.5 38.6 304 162-474 23-357 (450)
10 3fp2_A TPR repeat-containing p 1.0 1 1 170.1 32.0 417 138-577 34-492 (537)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=279.50 Aligned_cols=424 Identities=11% Similarity=-0.043 Sum_probs=295.4
Q ss_pred HHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99307937999999999841799988868999999999449988999999999986999798879999999997699159
Q 005474 139 LNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNK 218 (695)
Q Consensus 139 ~~~l~~~~~A~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 218 (695)
+...++++.|..+|+.+... .|+..++..++.+|.+.|++++|..+|+.+... .++..+++.++.+|.+.|++++
T Consensus 94 ~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 168 (597)
T 2xpi_A 94 ALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQG 168 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCCHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98745834799999999960---899357999999999747699999999987335--4565089999999998866999
Q ss_pred HHHHHHHCHH-C--------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------
Q ss_conf 9999986412-9--------------99999999999999998459977999999999639999899999999-------
Q 005474 219 AVEWFERMPS-F--------------GCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTL------- 276 (695)
Q Consensus 219 A~~~~~~m~~-~--------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l------- 276 (695)
|+++|+++.. . +...+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+...+..+
T Consensus 169 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 247 (597)
T 2xpi_A 169 ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLT 247 (597)
T ss_dssp HHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSC
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHCCC
T ss_conf 99998424886322323433432112351258999998899998399899999999999729-32569999999850346
Q ss_pred -------------------------------HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf -------------------------------9999981994799999999998699988776999999998249957999
Q 005474 277 -------------------------------IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 325 (695)
Q Consensus 277 -------------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 325 (695)
+..|.+.|++++|.++|+++.+. +++..+++.++..|.+.|++++|.
T Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 248 ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp HHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 156789998657742344308899999999999980731399999999876438--830999999999999846899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999998899999999999999998179968999999999986999999999999999995599999999999947489
Q 005474 326 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 405 (695)
Q Consensus 326 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 405 (695)
.+|+++.+.+. .+..++..++.+|.+.|++++|..+++.+.+.. +.+...++.++..|.+.|++++|.++|+++.+..
T Consensus 326 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 403 (597)
T 2xpi_A 326 AITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD 403 (597)
T ss_dssp HHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 99999997295-537999999999998277779999999998518-3547999999999998356999999999998729
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 99999999999999999739989999999999988998899999999999997299769999999804499998998899
Q 005474 406 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 485 (695)
Q Consensus 406 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 485 (695)
+.+..+|+.++..|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|..+|++|.+.. ..+..++.
T Consensus 404 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 479 (597)
T 2xpi_A 404 --PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLN 479 (597)
T ss_dssp --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_conf --7778999999999997577799999999999868-1343899999999998579999999999999848-88767999
Q ss_pred HHHHHHHCCCH-HHHHHHHHHHHHC------CCCH-HHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCC-CCCCHHHHHH
Q ss_conf 99999932997-9999999999970------9884-5899998540000100799999988730-2386-5311489999
Q 005474 486 CLLNVMTQTPK-EELGKLVECVEKS------NSKL-GYVVKLLLEEQDIEGDFKKEATELFNSI-SKDV-KKAYCNCLID 555 (695)
Q Consensus 486 ~ll~~~~~~~~-~~a~~~~~~~~~~------~p~~-~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~-~~~~~~~L~~ 555 (695)
.+...+.+.|+ ++|.++++.+... +|+. ..++..++..+...| ..++|.+.++++ ...| +..+|..++.
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 558 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK-MYDAAIDALNQGLLLSTNDANVHTAIAL 558 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 999999981899999999999998532345453549999999999999804-7999999999999738997389999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 9995599889999999998758
Q 005474 556 LCVNLNLLENACKLLELGLTLE 577 (695)
Q Consensus 556 ~~~~~g~~~~A~~~l~~~~~~~ 577 (695)
+|.+.|++++|.+.++++++..
T Consensus 559 ~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 559 VYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCHHHHHHHHHHHHHCC
T ss_conf 9998178999999999997208
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=276.43 Aligned_cols=434 Identities=12% Similarity=0.023 Sum_probs=364.5
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCHHHHHHH
Q ss_conf 98886899999999944998899999999998699979887999999999769915999999864129999999999999
Q 005474 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241 (695)
Q Consensus 162 ~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 241 (695)
.++...|+.++..+.+.|++++|..+|+.|... .|+..++..++.+|...|++++|..+|+.+.. ..++..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHC--CCCCHHHHHHH
T ss_conf 789999999999998745834799999999960--89935799999999974769999999998733--54565089999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 99998459977999999999639---------------999899999999999998199479999999999869998877
Q 005474 242 IDAYGRAGNVEMAFGLYDRARNE---------------KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 306 (695)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 306 (695)
+.+|.+.|++++|.++|+++... +.+.+..+|+.++.+|.+.|++++|.++|++|.+.+.. +..
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~ 235 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYE 235 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCH-HHH
T ss_conf 9999988669999999842488632232343343211235125899999889999839989999999999972932-569
Q ss_pred HHHHH--------------------------------------HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 69999--------------------------------------9999824995799999999998899999999999999
Q 005474 307 TYNNL--------------------------------------LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 348 (695)
Q Consensus 307 ~~~~l--------------------------------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 348 (695)
.+..+ +..|.+.|++++|.++|+++.+. +++..++..++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHH
T ss_conf 999999850346156789998657742344308899999999999980731399999999876438--830999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99817996899999999998699999999999999999559999999999994748999999999999999999739989
Q 005474 349 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 428 (695)
Q Consensus 349 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 428 (695)
.|.+.|++++|..+|+++.+.+.. +..++..++.++.+.|+.++|..+++.+.... +.+..++..++..|.+.|+++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCHH
T ss_conf 999846899999999999972955-37999999999998277779999999998518--354799999999999835699
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCH-HHHHHHHHHHH
Q ss_conf 99999999998899889999999999999729976999999980449999899889999999932997-99999999999
Q 005474 429 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE 507 (695)
Q Consensus 429 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~-~~a~~~~~~~~ 507 (695)
+|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+.+|++|.+.+ ..+..++..+..+|.+.|+ ++|.++++.+.
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999998729-7778999999999997577799999999999868-1343899999999998579999999999999
Q ss_pred HCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC-------CCCC--CCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 70988458999985400001007999999887302-------3865--31148999999955998899999999987586
Q 005474 508 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-------KDVK--KAYCNCLIDLCVNLNLLENACKLLELGLTLEV 578 (695)
Q Consensus 508 ~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~~-------~~~~--~~~~~~L~~~~~~~g~~~~A~~~l~~~~~~~~ 578 (695)
...|+.......++..+...| ..++|.++++++. ..|+ ..+|..++++|.+.|++++|.++++++++...
T Consensus 469 ~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 469 ALFQYDPLLLNELGVVAFNKS-DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp HHCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHCCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 848887679999999999818-9999999999999853234545354999999999999980479999999999997389
Q ss_pred CCCCCCCCCCCEEECCCC--CCHHHHHHHHHHHHHHHHH
Q ss_conf 237401375502200355--7867899999999999999
Q 005474 579 YTDIQSRSPTQWSLHLKS--LSLGAALTALHIWINDLSK 615 (695)
Q Consensus 579 ~~~~~~~~~~~w~~~l~~--~s~G~~~~a~~~w~~~~~~ 615 (695)
. +.. .|. .+.. ...|...+|...+...+..
T Consensus 548 ~-~~~-----~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 548 N-DAN-----VHT-AIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp C-CHH-----HHH-HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CHH-----HHH-HHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 9-738-----999-9999999817899999999999720
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=234.09 Aligned_cols=185 Identities=16% Similarity=0.190 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHCHHCCCCCCHHH
Q ss_conf 8999999999449988999999999986999798879999999997699---------1599999986412999999999
Q 005474 167 LYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNL---------PNKAVEWFERMPSFGCDPDALT 237 (695)
Q Consensus 167 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~g~~p~~~~ 237 (695)
.++.+|..|++.|++++|+++|++|.+.|+.||..+||++|.+|++.+. +++|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999985989999999999999818998783999999999857830433321249999999999998089998999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999845997799999999963999989999999999999819947999999999986999887769999999982
Q 005474 238 YSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 317 (695)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 317 (695)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999846977889999999997289886111048999999888999999999999862999999999999999853
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 4995799999999998899999999999999998
Q 005474 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 351 (695)
Q Consensus 318 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 351 (695)
.|+.++|.+++++|.+.+..|+..||+.++..|+
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 8989999999999999489969999999999983
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=232.55 Aligned_cols=207 Identities=12% Similarity=0.198 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCHHHHHHHHHHHHHCCC---------H
Q ss_conf 8999999999986999798-87999999999769915999999864129999999999999999984599---------7
Q 005474 182 DKAERLFDDMLDRGVKPDN-VTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN---------V 251 (695)
Q Consensus 182 ~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~ 251 (695)
..+..+.+.+.+++..... ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHH
T ss_conf 45999999999826668979999999999985989999999999999818998783999999999857830433321249
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 79999999996399998999999999999981994799999999998699988776999999998249957999999999
Q 005474 252 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 331 (695)
Q Consensus 252 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 331 (695)
+.|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999808999899999999999846977889999999997289886111048999999888999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 988999999999999999981799689999999999869999999999999999955
Q 005474 332 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 388 (695)
Q Consensus 332 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 388 (695)
.+.|+.||..+|+++|.+|++.|+.++|.++|++|.+.+..|+..+|+.++..++..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 862999999999999999853898999999999999948996999999999998307
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=199.30 Aligned_cols=372 Identities=14% Similarity=0.109 Sum_probs=254.8
Q ss_pred HHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 93079379999999998417999888689999999994499889999999999869997988799999999976991599
Q 005474 140 NNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKA 219 (695)
Q Consensus 140 ~~l~~~~~A~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 219 (695)
...++++.|...+..+.... +.+...+..+...+...|++++|...++...+.. +.+...|..+...+...|++++|
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 87799999999999999849--7889999999999998689999999999997619-78669999999999877999999
Q ss_pred HHHHHHCHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99998641299999999999999999845997799999999963999989999999999999819947999999999986
Q 005474 220 VEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 299 (695)
Q Consensus 220 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 299 (695)
++.|+++.+.. +.+...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++...
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999998749-6539999999999998589999999999999759-896899999999999846899999999999872
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 99988776999999998249957999999999988999999999999999981799689999999999869999999999
Q 005474 300 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 379 (695)
Q Consensus 300 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 379 (695)
.. -+..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++..+.... +...+.
T Consensus 165 ~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 241 (388)
T 1w3b_A 165 QP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHG 241 (388)
T ss_dssp CT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHH
T ss_conf 98-978999999999998599999999999998559-886799999999999857899999999999852968-789999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999995599999999999947489999999999999999997399899999999999889988999999999999972
Q 005474 380 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 459 (695)
Q Consensus 380 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 459 (695)
.+...+...|++++|...++++.... +.+...+..+...+.+.|++++|...++++.+.. +.+..++..+...+.+.
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHC
T ss_conf 99999998688999999999998649--9988999999999998699799999999998649-44499999999999984
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCH-HHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99769999999804499998-99889999999932997-9999999999970988458999985400
Q 005474 460 QRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQ 524 (695)
Q Consensus 460 g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (695)
|++++|+..++++.+. .| +...+..+..++...|+ ++|...++.+.+.+|+.......+|..+
T Consensus 319 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp TCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 8999999999999860--9873999977999999868889999999999861999789998599999
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=195.83 Aligned_cols=380 Identities=12% Similarity=0.049 Sum_probs=276.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999944998899999999998699979887999999999769915999999864129999999999999999984599
Q 005474 171 TMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAYGRAGN 250 (695)
Q Consensus 171 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 250 (695)
+...+.+.|++++|...++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+...|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCC
T ss_conf 7999987799999999999999849-7889999999999998689999999999997619-7866999999999987799
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 77999999999639999899999999999998199479999999999869998877699999999824995799999999
Q 005474 251 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 330 (695)
Q Consensus 251 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 330 (695)
+++|...|+++.... +.+...|..+...+.+.|++++|.+.|+++..... .+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999998749-65399999999999985899999999999997598-9689999999999984689999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99889999999999999999817996899999999998699999999999999999559999999999994748999999
Q 005474 331 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 410 (695)
Q Consensus 331 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 410 (695)
+.... +.+..++..+...+.+.|++++|...|+++.+.+.. +...+..+...+...|++++|...+++..... +.+
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~ 236 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNH 236 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTC
T ss_pred HHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCC
T ss_conf 98729-897899999999999859999999999999855988-67999999999998578999999999998529--687
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999999999973998999999999998899889999999999999729976999999980449999899889999999
Q 005474 411 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 490 (695)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~ 490 (695)
..++..+...+...|++++|.+.++++.+.. +.+..+|..+...+.+.|++++|+..|+++.+.. ..+...+..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_conf 8999999999998688999999999998649-9988999999999998699799999999998649-4449999999999
Q ss_pred HHCCCH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCCCC-CCHHHHHHHHHHCC
Q ss_conf 932997-999999999997098845899998540000100799999988730-238653-11489999999559
Q 005474 491 MTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKK-AYCNCLIDLCVNLN 561 (695)
Q Consensus 491 ~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~~-~~~~~L~~~~~~~g 561 (695)
+...|+ ++|...++.+.+..|+.......++..+...| ..++|.+.++++ ...|+. ..|..++.++...|
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG-KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT-CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 998489999999999998609873999977999999868-8899999999998619997899985999998745
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=182.89 Aligned_cols=400 Identities=12% Similarity=0.001 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCHHHHHHHHHHH
Q ss_conf 68999999999449988999999999986999798879999999997699159999998641299999999999999999
Q 005474 166 ILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSMIDAY 245 (695)
Q Consensus 166 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 245 (695)
..+......+.+.|++++|...|+.+.... |+...+..+..++...|++++|+..++++.+.+ +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_conf 999998789998602789999999998559--227899868899998854999999998776069-37899999888999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH------------------------------
Q ss_conf 84599779999999996399998999999999999981994799999999------------------------------
Q 005474 246 GRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE------------------------------ 295 (695)
Q Consensus 246 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------------------------------ 295 (695)
.+.|++++|...|+++...+ +.+......++..+........+.+.+..
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHH
T ss_conf 98766888999999999559-87511378999999999999999999998999987665126772467886344786158
Q ss_pred -----HHHCCCC--------C-CHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHH
Q ss_conf -----9986999--------8-87769999999982---4995799999999998-----899--------999999999
Q 005474 296 -----MKAIGVK--------P-NMITYNNLLDTMGR---AKRPWQVKTIYKEMTD-----NGL--------SPNWNTYAS 345 (695)
Q Consensus 296 -----m~~~g~~--------p-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~ 345 (695)
+...... | +...+......+.. .|++++|...++++.. ... +.+...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 99999862587888887259958889999899998762332299999999999988665422381001148278999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999817996899999999998699999999999999999559999999999994748999999999999999999739
Q 005474 346 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 425 (695)
Q Consensus 346 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 425 (695)
+...+...|++++|...|+.+.+.... ...+..+...+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHC
T ss_conf 999999878999999999999863864--8999999999998888999999999986138--677899999999999807
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCH-HHHHHHH
Q ss_conf 989999999999988998899999999999997299769999999804499998-99889999999932997-9999999
Q 005474 426 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLV 503 (695)
Q Consensus 426 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~-~~a~~~~ 503 (695)
++++|...++++.+... .+...+..+...+...|++++|+..++++.+. .| +...+..+...+...|+ ++|...+
T Consensus 319 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp CTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 79999999999987385-02899999999999868999999999999987--5467789999999998788999999999
Q ss_pred HHHHHCCCCHHH------HHHHHHHHHCC---HHHHHHHHHHHHHHC-CCCCC-CCCHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999970988458------99998540000---100799999988730-23865-31148999999955998899999999
Q 005474 504 ECVEKSNSKLGY------VVKLLLEEQDI---EGDFKKEATELFNSI-SKDVK-KAYCNCLIDLCVNLNLLENACKLLEL 572 (695)
Q Consensus 504 ~~~~~~~p~~~~------~~~~l~~~~~~---~g~~~~eA~~l~~~~-~~~~~-~~~~~~L~~~~~~~g~~~~A~~~l~~ 572 (695)
+.+....|+... ....++..+.. .| ..++|...++.+ ...|+ ...+..++.++.+.|++++|...+++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE-NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 9999761233217899999999999986633258-889999999999875855589999999999982579999999999
Q ss_pred HHHCC
Q ss_conf 98758
Q 005474 573 GLTLE 577 (695)
Q Consensus 573 ~~~~~ 577 (695)
+++..
T Consensus 475 a~~~~ 479 (514)
T 2gw1_A 475 SADLA 479 (514)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 98766
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=172.29 Aligned_cols=397 Identities=11% Similarity=-0.004 Sum_probs=278.7
Q ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99930793799999999984179998886899999999944998899999999998699979887999999999769915
Q 005474 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217 (695)
Q Consensus 138 ~~~~l~~~~~A~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 217 (695)
.+...++++.|...|+.+.... |+...|..+..++...|++++|...++.+.+.+ +.+...+..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998602789999999998559---227899868899998854999999998776069-378999998889999876688
Q ss_pred HHHHHHHHCHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------------------------------H
Q ss_conf 99999986412999999999999999998459977999999999-----------------------------------6
Q 005474 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRA-----------------------------------R 262 (695)
Q Consensus 218 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-----------------------------------~ 262 (695)
+|+..|+++...+. ++......++..+........+.+.+..+ .
T Consensus 91 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 91 DAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 89999999995598-75113789999999999999999999989999876651267724678863447861589999986
Q ss_pred HCCC---------CCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----CCCC--------CCHHHHHHHHHHHHH
Q ss_conf 3999---------9899999999999998---1994799999999998-----6999--------887769999999982
Q 005474 263 NEKW---------RIDPNAFSTLIKLYGT---AGNFDGCLNVYEEMKA-----IGVK--------PNMITYNNLLDTMGR 317 (695)
Q Consensus 263 ~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~~~~~li~~~~~ 317 (695)
.... +.+...+......+.. .|++++|...|+++.. .... .+...+..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 25878888872599588899998999987623322999999999999886654223810011482789999999999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 49957999999999988999999999999999981799689999999999869999999999999999955999999999
Q 005474 318 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 397 (695)
Q Consensus 318 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 397 (695)
.|++++|...++.+..... +...+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|...
T Consensus 250 ~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 7899999999999986386--4899999999999888899999999998613867-789999999999980779999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 99947489999999999999999997399899999999999889988999999999999972997699999998044999
Q 005474 398 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 477 (695)
Q Consensus 398 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 477 (695)
++.+.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...
T Consensus 327 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 327 FDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99998738--5028999999999998689999999999999875-46778999999999878899999999999997612
Q ss_pred -CCC----HHHHHHHHHHHHC---CCH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCCC
Q ss_conf -989----9889999999932---997-999999999997098845899998540000100799999988730-23865
Q 005474 478 -TPD----DRFCGCLLNVMTQ---TPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVK 546 (695)
Q Consensus 478 -~pd----~~~~~~ll~~~~~---~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~eA~~l~~~~-~~~~~ 546 (695)
.++ ...+..+...+.. .|+ ++|...++.+....|+.......++..+...| ..++|.+.++++ ...|+
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE-DIDEAITLFEESADLART 481 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHCCC
T ss_conf 332178999999999999866332588899999999998758555899999999999825-799999999999876614
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=170.47 Aligned_cols=304 Identities=13% Similarity=0.067 Sum_probs=192.7
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCHHHHHHH
Q ss_conf 98886899999999944998899999999998699979887999999999769915999999864129999999999999
Q 005474 162 SKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPNKAVEWFERMPSFGCDPDALTYSSM 241 (695)
Q Consensus 162 ~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 241 (695)
+.+...+..+...+.+.|++++|..+|+.+.+.. +.+...+..+..++...|++++|+..|+++.+.+ +.+...+..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHH
T ss_conf 7899999999999998799999999999999849-7168999999999998799799999999998449-8748999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHH------------HHHHCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 99998459977999999999639999899---99999999------------9998199479999999999869998877
Q 005474 242 IDAYGRAGNVEMAFGLYDRARNEKWRIDP---NAFSTLIK------------LYGTAGNFDGCLNVYEEMKAIGVKPNMI 306 (695)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 306 (695)
...|.+.|++++|...|+++.... +.+. ..+..++. .+...|++++|...|+++..... .+..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHH
T ss_conf 999998699999999999997249-99701688999999999999999999999986899999999999998688-9769
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----
Q ss_conf 699999999824995799999999998899999999999999998179968999999999986999999999999-----
Q 005474 307 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL----- 381 (695)
Q Consensus 307 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l----- 381 (695)
.+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...|+.+.+.... +...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_conf 99999999987799999999999999868-898799999999999759999999999999875998-0899999999999
Q ss_pred -------HHHHHHCCCHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf -------99999559999999999994748999999----9999999999997399899999999999889988999999
Q 005474 382 -------LAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 450 (695)
Q Consensus 382 -------i~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 450 (695)
...+...|++++|...++.+.... +.+ ...+..+...+.+.|++++|...++++.+.. +.+...|.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_conf 9999999999987179999999999998508--73368999999999999998788999999999998848-45489999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999972997699999998044
Q 005474 451 SLIQCYGKAQRTDDVVRALNRLPE 474 (695)
Q Consensus 451 ~li~~~~~~g~~~~A~~~~~~m~~ 474 (695)
.+..+|...|++++|...++++.+
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999999870379999999999988
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=170.14 Aligned_cols=417 Identities=11% Similarity=-0.005 Sum_probs=264.4
Q ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99930793799999999984179998886899999999944998899999999998699979887999999999769915
Q 005474 138 ILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDMLDRGVKPDNVTFSTLISCARMNNLPN 217 (695)
Q Consensus 138 ~~~~l~~~~~A~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 217 (695)
.+...++++.|...|+.+.... +.+...|..+..++...|++++|...|+.+.+.. +.+...+..+..++...|+++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHH
T ss_conf 9998642999999999998638--9984899999999998689999999999998609-862899999999999838999
Q ss_pred HHHHHHHHCHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 999999864129999999999999999984599779999999996399------99899999999999998199479999
Q 005474 218 KAVEWFERMPSFGCDPDALTYSSMIDAYGRAGNVEMAFGLYDRARNEK------WRIDPNAFSTLIKLYGTAGNFDGCLN 291 (695)
Q Consensus 218 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~ 291 (695)
+|+..|+.+.. .|+. ....+..+...+....+...++++.... ..++. ..+..+....+.+.+..
T Consensus 111 ~A~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 111 DAMFDLSVLSL---NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHC---CCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH----HHHHHHHHHCCHHHHHH
T ss_conf 99999999864---8787--858899999877898899999999974745454345067----57999997447499999
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHH--------HCCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHCCC
Q ss_conf 999999869998877-6999999998--------24995799999999998899999-------9999999999981799
Q 005474 292 VYEEMKAIGVKPNMI-TYNNLLDTMG--------RAKRPWQVKTIYKEMTDNGLSPN-------WNTYASLLRAYGRARY 355 (695)
Q Consensus 292 ~~~~m~~~g~~p~~~-~~~~li~~~~--------~~g~~~~a~~~~~~m~~~~~~~~-------~~~~~~li~~~~~~g~ 355 (695)
.+...... .+... ....+...+. ..+++++|..+++.+.+.... + ...+..+...+...|+
T Consensus 182 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 182 SVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp TSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 87632564--617899999998788764020688887999999999999987877-404459999999999999875455
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 68999999999986999999999999999995599999999999947489999999999999999997399899999999
Q 005474 356 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 435 (695)
Q Consensus 356 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 435 (695)
+++|...|+...+... +...+..+...+...|++++|...++.+.... +.+...+..+...+...|++++|...++
T Consensus 259 ~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 259 LLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp HHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 7899999999986698--74699999999998037999999999975459--9987999999999986689999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCH-HHHHHHHHHHHHCCCCH
Q ss_conf 99988998899999999999997299769999999804499998-99889999999932997-99999999999709884
Q 005474 436 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 513 (695)
Q Consensus 436 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~p~~ 513 (695)
++.+... .+...+..+...+...|++++|...++++.+. .| +...+..+...+...|+ ++|...++.+....|+.
T Consensus 335 ~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 335 KAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 9998599-97799999999999847799999999999873--99985999999999988378899999999998709762
Q ss_pred HHH------HHHHHHHHCCH----------HHHHHHHHHHHHHC-CCCCC-CCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 589------99985400001----------00799999988730-23865-31148999999955998899999999987
Q 005474 514 GYV------VKLLLEEQDIE----------GDFKKEATELFNSI-SKDVK-KAYCNCLIDLCVNLNLLENACKLLELGLT 575 (695)
Q Consensus 514 ~~~------~~~l~~~~~~~----------g~~~~eA~~l~~~~-~~~~~-~~~~~~L~~~~~~~g~~~~A~~~l~~~~~ 575 (695)
... ...++..+... | ..++|...++++ ...|+ ..+|..++.++...|++++|.+.++++++
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEE-KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 4468889999988999999764010022475-799999999999974999789999999999985149999999999998
Q ss_pred CC
Q ss_conf 58
Q 005474 576 LE 577 (695)
Q Consensus 576 ~~ 577 (695)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred HC
T ss_conf 68
Done!