Your job contains 1 sequence.
>005475
MERFMTEPSIEDQDHINQDSKVKNFKDPLYNFDSKNSDLSLADSFLDFDTIKELFEDYSP
NLDRIGLEKIEFGVLEKSLKMNQEENFHFGNLVSDGSDCVVKVEEALVGGKEKNLSCCIE
EDMGKVSLVDAKSGIASDGDGSKKVDLVGNMGSFPADKDGAKSGIISDEKESESESESEN
ESSASSSSSSSSSSDNDEEEDEDEELKKEEAKKEVERGLGELGELEEGEIEDVDREEMTG
GIDDDEDDEEDEVEMISVVDVDIDGGDEIDGCAREGPIRSKNELQVLPLVPQVNVVLQPH
HQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVV
RYNSENEIPAEIRVGTSISFVQDFANHVLDDKNLYKKGYDASGENDEELSDEAEFSDDEK
EAEYKRRQKMEKRGMDDQKPGNRKNNRKKVKNKDGMWRNGRPSAPQMDGVGQPLPNQNQH
PVSHVPASLDQGNCSTSSIGQGFVGGTGLVPQLQQMVQNTSFSTSPSAVWTDRIPPQQPQ
GTFFPNVFPTNGLPWPSQNYQQPPYQPMMNCGLFLQQSSQMSLPNVGLPGGPSNFFAGPT
YAPWQGLLGQNGLNQTIGQGLPQQPACPSVNASQGILPPNGLHVKQNNLQQAAVLPGSIE
APQQFNMGASSSRGRKPYHRGGGRFSGGRVRHQSR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005475
(695 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2020713 - symbol:NAF1 "nuclear assembly factor... 504 1.6e-62 3
UNIPROTKB|J9P780 - symbol:NAF1 "Uncharacterized protein" ... 202 3.9e-15 2
UNIPROTKB|F1NV75 - symbol:NAF1 "Uncharacterized protein" ... 212 1.9e-14 1
UNIPROTKB|F1NWY4 - symbol:NAF1 "Uncharacterized protein" ... 212 2.4e-14 1
RGD|1306802 - symbol:Naf1 "nuclear assembly factor 1 ribo... 203 4.5e-14 2
UNIPROTKB|Q52KK4 - symbol:Naf1 "H/ACA ribonucleoprotein c... 203 4.5e-14 2
UNIPROTKB|Q96HR8 - symbol:NAF1 "H/ACA ribonucleoprotein c... 206 4.8e-14 2
UNIPROTKB|Q1RMQ2 - symbol:LOC514182 "Uncharacterized prot... 203 1.4e-13 1
MGI|MGI:2682306 - symbol:Naf1 "nuclear assembly factor 1 ... 202 1.7e-13 2
UNIPROTKB|F1LMR4 - symbol:Naf1 "H/ACA ribonucleoprotein c... 203 1.8e-13 1
ZFIN|ZDB-GENE-030131-4546 - symbol:naf1 "nuclear assembly... 204 2.8e-13 1
UNIPROTKB|F1RTX5 - symbol:NAF1 "Uncharacterized protein" ... 202 3.9e-13 1
POMBASE|SPBC30D10.15 - symbol:SPBC30D10.15 "snoRNP assemb... 200 8.3e-13 1
SGD|S000005068 - symbol:NAF1 "RNA-binding protein require... 199 9.7e-13 1
ASPGD|ASPL0000057096 - symbol:AN0728 species:162425 "Emer... 188 4.2e-11 2
CGD|CAL0005870 - symbol:orf19.494 species:5476 "Candida a... 159 3.7e-08 1
UNIPROTKB|G4N8S8 - symbol:MGG_10116 "Uncharacterized prot... 151 2.7e-07 2
TAIR|locus:2125556 - symbol:AT4G03380 "AT4G03380" species... 128 5.3e-06 1
DICTYBASE|DDB_G0276085 - symbol:DDB_G0276085 "H/ACA ribon... 138 8.0e-05 2
FB|FBgn0032701 - symbol:CG10341 species:7227 "Drosophila ... 122 0.00036 1
>TAIR|locus:2020713 [details] [associations]
symbol:NAF1 "nuclear assembly factor 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0030515 "snoRNA binding" evidence=IEA] [GO:0031120 "snRNA
pseudouridine synthesis" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0006606 "protein import into nucleus" evidence=RCA]
InterPro:IPR007504 Pfam:PF04410 EMBL:CP002684 GO:GO:0009506
EMBL:AC002560 GO:GO:0030515 GO:GO:0042254 GO:GO:0031120
InterPro:IPR009000 SUPFAM:SSF50447 KO:K14763 IPI:IPI00520210
PIR:T00905 RefSeq:NP_171852.2 UniGene:At.42540
ProteinModelPortal:Q9LR70 SMR:Q9LR70 STRING:Q9LR70 PRIDE:Q9LR70
EnsemblPlants:AT1G03530.1 GeneID:839468 KEGG:ath:AT1G03530
TAIR:At1g03530 InParanoid:Q9LR70 OMA:WITEKRT
ProtClustDB:CLSN2719834 Genevestigator:Q9LR70 Uniprot:Q9LR70
Length = 801
Score = 504 (182.5 bits), Expect = 1.6e-62, Sum P(3) = 1.6e-62
Identities = 99/166 (59%), Positives = 113/166 (68%)
Query: 277 PIRSKNEXXXXXXXXXXXXXXXXHHQMLPXXXXXXXXXXXXXXEGAEKHNPLNEGSILWI 336
PIRSKNE HH LP EG EKH+PL EGSILWI
Sbjct: 355 PIRSKNELKELPPVPPVDVTLEPHHATLPVGVVLSVMSAQVIVEGMEKHSPLTEGSILWI 414
Query: 337 TESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFVQDFANHVLDDKNLYK 396
TE R PLGL+DEIFGPVK PYY+VR+NSE+E+P + GT +SFV DFA H+L+ K L K
Sbjct: 415 TEKRTPLGLVDEIFGPVKCPYYIVRFNSESEVPEGVCQGTPVSFVADFAQHILNIKELQK 474
Query: 397 KGYDASGENDEELSDEAEFSDDEKEAEYKRRQKMEKRGM-DDQKPG 441
KGYDASG+NDEE+ DE EFSDDEKEAEY+R QK+EKRGM DQK G
Sbjct: 475 KGYDASGDNDEEIPDELEFSDDEKEAEYRRMQKLEKRGMMSDQKTG 520
Score = 127 (49.8 bits), Expect = 1.6e-62, Sum P(3) = 1.6e-62
Identities = 39/114 (34%), Positives = 54/114 (47%)
Query: 573 LFLQQSSQMSLPNVGLPGGPSNFFAGPTYAPWQGLLGQNGLNQT--IGQGLPQQPACP-- 628
+F Q + +P G PGG NFF G APW ++GQN NQ +G+G+ QQP P
Sbjct: 613 MFQPQFNGGQMPMPGGPGG-LNFFPGQASAPWPAMVGQNCFNQQFGMGRGIQQQPL-PNE 670
Query: 629 -SVNA-SQGIL--PPNG-LHVKQNNLQQAAVLPGSIEAPQQFNMGASSSRGRKP 677
S N SQG+ PP +H Q+ + +P + QQ M +P
Sbjct: 671 LSFNMFSQGLQMHPPQSQMHRPQSQMNPQFQMPPQFQPHQQSPMNPQYQMMHRP 724
Score = 53 (23.7 bits), Expect = 1.6e-62, Sum P(3) = 1.6e-62
Identities = 39/159 (24%), Positives = 63/159 (39%)
Query: 17 NQDSKVKNFKDPLYNFDSKNXXXXXXXXXXXXXTIKELFEDYSPNLDRIGLEKIEFGVLE 76
+QD KVK FKD +FD + ED+S +E +F E
Sbjct: 23 DQDPKVKTFKD---SFDFPSIDSFPDFDSITWSESNRNVEDFS-------IEDTDFDFFE 72
Query: 77 KSLKMNQEENFHFGNLVSDGSDCVVKVEEALVGGK----------EKNLSCCIEEDMGKV 126
+++ QE+ +++ + V E + GK E +S E M +V
Sbjct: 73 YHMEIPQEDVVTVSDVMCPENQTTVNSES--IEGKLEVFNDDMSGEVGVSSVRSESMVEV 130
Query: 127 S--LVDAKS---GIAS-DGDGSKKVDLVGNMGSFPADKD 159
L D S G++S + + + V++ N G PA KD
Sbjct: 131 KPVLCDVMSEEVGVSSVEVEPNVCVEMSANGGDEPAVKD 169
Score = 51 (23.0 bits), Expect = 2.6e-62, Sum P(3) = 2.6e-62
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 92 LVSDGS-DC-VVKVEEALVGGKEKNLSCCIEEDMGKVSLVDAKSGIASDGDGSKKVDLVG 149
+VSD S C + ++E+ + ++ L+C IE + KVSL A D D K + G
Sbjct: 189 VVSDASVACPTMDLDESGLKKTDEGLACSIEVGLEKVSL-------AVDDD-EKSDEAKG 240
Query: 150 NMGSFPADKDGAKS 163
M S ++ + + S
Sbjct: 241 EMDSAESESETSSS 254
Score = 50 (22.7 bits), Expect = 1.8e-54, Sum P(3) = 1.8e-54
Identities = 31/100 (31%), Positives = 42/100 (42%)
Query: 579 SQMSLPNVGLPGGPSNFFAGPTYAPWQGLLGQNGLN-QTIGQGLPQQPACPSVNA-SQGI 636
SQM P + P F P + P Q Q+ +N Q PQ PA P +Q
Sbjct: 687 SQMHRPQSQM--NPQ-FQMPPQFQPHQ----QSPMNPQYQMMHRPQSPANPQFQMQAQSD 739
Query: 637 LPPNGLHVKQNNLQ-QAAVLPGSIEAPQQFNMGASSSRGR 675
+ P + Q+ Q+ + P S Q F+ G SS RGR
Sbjct: 740 VRPLQSQIPQSPSDLQSPMEPQS----QGFSSGQSSERGR 775
Score = 50 (22.7 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 401 ASGENDEELSDEAEFSDDEKEAEY-KRRQKMEKR--GMDDQKPG 441
++ +D S+E E +DE + E K+ +K E G +D G
Sbjct: 255 SASSSDSSSSEEEESDEDESDKEENKKEEKFEHMVVGKEDDLAG 298
Score = 49 (22.3 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 390 DDKNLYKKGYDASGENDEELSDEAEFSDDEKEAEYKRRQKMEKRGMDDQK 439
D+K+ KG S E++ E S + S D +E + + E +++K
Sbjct: 232 DEKSDEAKGEMDSAESESETSSSSASSSDSSSSEEEESDEDESDKEENKK 281
Score = 42 (19.8 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 405 NDEELSDEAEFSDDEKEAE 423
+D+E SDEA+ D E+E
Sbjct: 230 DDDEKSDEAKGEMDSAESE 248
Score = 39 (18.8 bits), Expect = 5.6e-05, Sum P(3) = 5.6e-05
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 389 LDDKNLYKKGYDASGENDEELSDEAEFSDDEKEAEYKRRQKMEKRGMDDQKP 440
LD++N G D + D++ D+ + DD E + + G+ ++P
Sbjct: 308 LDEEN----GDDDIEDEDDDDDDDDDDDDDVNEMVAWSNDEDDDLGLQTKEP 355
>UNIPROTKB|J9P780 [details] [associations]
symbol:NAF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA]
[GO:0030515 "snoRNA binding" evidence=IEA] InterPro:IPR007504
Pfam:PF04410 GO:GO:0030515 GO:GO:0042254 GO:GO:0031120
InterPro:IPR009000 SUPFAM:SSF50447 GeneTree:ENSGT00390000004697
EMBL:AAEX03010099 Ensembl:ENSCAFT00000046594 OMA:AKVFEVF
Uniprot:J9P780
Length = 296
Score = 202 (76.2 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 45/113 (39%), Positives = 75/113 (66%)
Query: 327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
P+NE ++++ ++ R G I EIFGPV +P+YV+R+NS I ++ I++ ++ F ++
Sbjct: 20 PVNEETVIFKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSEHIESKGIKIKDTMYFAPSMK 78
Query: 383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
DF ++ +K +G DAS +ND+E EA +FSDDEKE E K+R+K + +G
Sbjct: 79 DFTQYIFTEKLKQDRGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQG 131
Score = 44 (20.5 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 462 PSAPQMDGVGQPLPNQNQHPVSHVPASL 489
P P +G PN HP+ +P S+
Sbjct: 244 PPPPASVNLGWAAPNMAPHPLIPLPYSI 271
>UNIPROTKB|F1NV75 [details] [associations]
symbol:NAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0030515 "snoRNA binding" evidence=IEA] [GO:0031120
"snRNA pseudouridine synthesis" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR007504 Pfam:PF04410
GO:GO:0030515 GO:GO:0042254 GO:GO:0031120 InterPro:IPR009000
SUPFAM:SSF50447 GeneTree:ENSGT00390000004697 EMBL:AADN02016447
IPI:IPI00821289 Ensembl:ENSGALT00000015459 ArrayExpress:F1NV75
Uniprot:F1NV75
Length = 398
Score = 212 (79.7 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 48/108 (44%), Positives = 72/108 (66%)
Query: 327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
P+NE SI++ E R G + E+FGPV++P+YV+R+NS I A+ I V ++ F V+
Sbjct: 133 PINEESIIF-KEDRQAAGKVFEVFGPVQHPFYVLRFNSAEHIKAKGINVQDNMYFAPSVE 191
Query: 383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQK 429
DF ++ +K +KG DAS +ND+E EA +FSDDEKE E K+++K
Sbjct: 192 DFTQYIFAEKLQQEKGSDASWKNDQEPPPEALDFSDDEKEREAKQKKK 239
>UNIPROTKB|F1NWY4 [details] [associations]
symbol:NAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0030515 "snoRNA binding" evidence=IEA] [GO:0031120
"snRNA pseudouridine synthesis" evidence=IEA] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
[GO:0030054 "cell junction" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR007504 Pfam:PF04410
GO:GO:0005737 GO:GO:0005813 GO:GO:0030054 GO:GO:0030515
GO:GO:0042254 GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447
GO:GO:0005732 GeneTree:ENSGT00390000004697 OMA:MHNFSLP
EMBL:AADN02016447 IPI:IPI00582158 Ensembl:ENSGALT00000038789
ArrayExpress:F1NWY4 Uniprot:F1NWY4
Length = 427
Score = 212 (79.7 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 48/108 (44%), Positives = 72/108 (66%)
Query: 327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
P+NE SI++ E R G + E+FGPV++P+YV+R+NS I A+ I V ++ F V+
Sbjct: 165 PINEESIIF-KEDRQAAGKVFEVFGPVQHPFYVLRFNSAEHIKAKGINVQDNMYFAPSVE 223
Query: 383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQK 429
DF ++ +K +KG DAS +ND+E EA +FSDDEKE E K+++K
Sbjct: 224 DFTQYIFAEKLQQEKGSDASWKNDQEPPPEALDFSDDEKEREAKQKKK 271
>RGD|1306802 [details] [associations]
symbol:Naf1 "nuclear assembly factor 1 ribonucleoprotein"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISO;ISS]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005813 "centrosome"
evidence=IEA;ISO] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0030054 "cell junction" evidence=IEA;ISO] [GO:0030515 "snoRNA
binding" evidence=IEA] [GO:0031120 "snRNA pseudouridine synthesis"
evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA;ISO;ISS] InterPro:IPR007504 Pfam:PF04410 RGD:1306802
GO:GO:0005634 GO:GO:0005737 GO:GO:0005813 GO:GO:0030054
GO:GO:0030515 GO:GO:0042254 GO:GO:0003723 GO:GO:0006364
GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447 KO:K14763
GO:GO:0005732 eggNOG:NOG275663 CTD:92345 HOVERGEN:HBG108169
HOGENOM:HOG000214085 EMBL:BC094302 IPI:IPI00358278
RefSeq:NP_001019943.1 UniGene:Rn.162269 ProteinModelPortal:Q52KK4
SMR:Q52KK4 STRING:Q52KK4 PRIDE:Q52KK4 GeneID:306387 KEGG:rno:306387
UCSC:RGD:1306802 NextBio:655989 ArrayExpress:Q52KK4
Genevestigator:Q52KK4 Uniprot:Q52KK4
Length = 457
Score = 203 (76.5 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 45/113 (39%), Positives = 75/113 (66%)
Query: 327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
P+NE ++++ ++ R G I EIFGPV +P+YV+R+NS I ++ I++ ++ F ++
Sbjct: 187 PVNEDTVIFKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSEHIESKGIKIKDTMYFAPSMK 245
Query: 383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
DF ++ +K +G DAS +ND+E EA +FSDDEKE E K+R+K + +G
Sbjct: 246 DFTQYIFTEKLKQDRGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQG 298
Score = 50 (22.7 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 462 PSAPQMDGVGQPLPNQNQHPVSHVPASL 489
P P +G P+ HPV ++P SL
Sbjct: 404 PPPPPTVSMGWAAPSMTSHPVLNLPYSL 431
>UNIPROTKB|Q52KK4 [details] [associations]
symbol:Naf1 "H/ACA ribonucleoprotein complex non-core
subunit NAF1" species:10116 "Rattus norvegicus" [GO:0030515 "snoRNA
binding" evidence=IEA] [GO:0031120 "snRNA pseudouridine synthesis"
evidence=IEA] InterPro:IPR007504 Pfam:PF04410 RGD:1306802
GO:GO:0005634 GO:GO:0005737 GO:GO:0005813 GO:GO:0030054
GO:GO:0030515 GO:GO:0042254 GO:GO:0003723 GO:GO:0006364
GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447 KO:K14763
GO:GO:0005732 eggNOG:NOG275663 CTD:92345 HOVERGEN:HBG108169
HOGENOM:HOG000214085 EMBL:BC094302 IPI:IPI00358278
RefSeq:NP_001019943.1 UniGene:Rn.162269 ProteinModelPortal:Q52KK4
SMR:Q52KK4 STRING:Q52KK4 PRIDE:Q52KK4 GeneID:306387 KEGG:rno:306387
UCSC:RGD:1306802 NextBio:655989 ArrayExpress:Q52KK4
Genevestigator:Q52KK4 Uniprot:Q52KK4
Length = 457
Score = 203 (76.5 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 45/113 (39%), Positives = 75/113 (66%)
Query: 327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
P+NE ++++ ++ R G I EIFGPV +P+YV+R+NS I ++ I++ ++ F ++
Sbjct: 187 PVNEDTVIFKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSEHIESKGIKIKDTMYFAPSMK 245
Query: 383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
DF ++ +K +G DAS +ND+E EA +FSDDEKE E K+R+K + +G
Sbjct: 246 DFTQYIFTEKLKQDRGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQG 298
Score = 50 (22.7 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 462 PSAPQMDGVGQPLPNQNQHPVSHVPASL 489
P P +G P+ HPV ++P SL
Sbjct: 404 PPPPPTVSMGWAAPSMTSHPVLNLPYSL 431
>UNIPROTKB|Q96HR8 [details] [associations]
symbol:NAF1 "H/ACA ribonucleoprotein complex non-core
subunit NAF1" species:9606 "Homo sapiens" [GO:0030515 "snoRNA
binding" evidence=IEA] [GO:0031120 "snRNA pseudouridine synthesis"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0042254 "ribosome biogenesis" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0030054 "cell junction" evidence=IDA] InterPro:IPR007504
Pfam:PF04410 GO:GO:0005634 GO:GO:0005737 GO:GO:0005813
GO:GO:0030054 GO:GO:0030515 GO:GO:0042254 GO:GO:0003723
EMBL:CH471056 GO:GO:0006364 GO:GO:0031120 InterPro:IPR009000
SUPFAM:SSF50447 KO:K14763 GO:GO:0005732 eggNOG:NOG275663
EMBL:AC022272 EMBL:BC008207 IPI:IPI00063219 RefSeq:NP_001122403.1
RefSeq:NP_612395.2 UniGene:Hs.129095 PDB:2EQN PDBsum:2EQN
ProteinModelPortal:Q96HR8 SMR:Q96HR8 IntAct:Q96HR8 STRING:Q96HR8
PhosphoSite:Q96HR8 DMDM:296439238 PaxDb:Q96HR8 PRIDE:Q96HR8
Ensembl:ENST00000274054 GeneID:92345 KEGG:hsa:92345 UCSC:uc003iqj.3
CTD:92345 GeneCards:GC04M164047 H-InvDB:HIX0004605 HGNC:HGNC:25126
HPA:HPA036242 neXtProt:NX_Q96HR8 PharmGKB:PA162396775
HOGENOM:HOG000168512 HOVERGEN:HBG108169 InParanoid:Q96HR8
OMA:MHNFSLP PhylomeDB:Q96HR8 EvolutionaryTrace:Q96HR8
GenomeRNAi:92345 NextBio:77719 ArrayExpress:Q96HR8 Bgee:Q96HR8
CleanEx:HS_NAF1 Genevestigator:Q96HR8 Uniprot:Q96HR8
Length = 494
Score = 206 (77.6 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 46/113 (40%), Positives = 76/113 (67%)
Query: 327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
P+NE ++++ ++ R G I EIFGPV +P+YV+R+NS + I ++ I++ ++ F ++
Sbjct: 222 PVNEETVIFKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKETMYFAPSMK 280
Query: 383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
DF ++ +K KG DAS +ND+E EA +FSDDEKE E K+R+K + +G
Sbjct: 281 DFTQYIFTEKLKQDKGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQG 333
Score = 48 (22.0 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 462 PSAPQMDGVGQPLPNQNQHPVSHVPASL 489
P P +G PN HP+ ++P SL
Sbjct: 441 PPPPPPVNMGWATPNMAAHPLLNLPYSL 468
>UNIPROTKB|Q1RMQ2 [details] [associations]
symbol:LOC514182 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0030054 "cell junction" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=IEA]
[GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA]
[GO:0030515 "snoRNA binding" evidence=IEA] InterPro:IPR007504
Pfam:PF04410 GO:GO:0005737 GO:GO:0005813 GO:GO:0030054
GO:GO:0030515 GO:GO:0042254 GO:GO:0031120 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0005732 eggNOG:NOG275663
GeneTree:ENSGT00390000004697 HOGENOM:HOG000168512 EMBL:DAAA02015211
EMBL:BC114778 IPI:IPI00843064 UniGene:Bt.23295 SMR:Q1RMQ2
STRING:Q1RMQ2 Ensembl:ENSBTAT00000052013 OMA:SQGENTE Uniprot:Q1RMQ2
Length = 360
Score = 203 (76.5 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 46/113 (40%), Positives = 74/113 (65%)
Query: 327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
P+NE ++++ T+ R G I EIFGPV +P+YV+R+NS I + I++ ++ F ++
Sbjct: 185 PVNEETVIFKTD-RQAAGKIFEIFGPVAHPFYVLRFNSSEHIENKGIKIKDTMYFAPSMK 243
Query: 383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
DF ++ +K +G DAS +ND+E EA +FSDDEKE E K+R+K + +G
Sbjct: 244 DFTQYIFTEKLKQDRGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQG 296
>MGI|MGI:2682306 [details] [associations]
symbol:Naf1 "nuclear assembly factor 1 homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0030515 "snoRNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0031120
"snRNA pseudouridine synthesis" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=ISO] InterPro:IPR007504 Pfam:PF04410
MGI:MGI:2682306 GO:GO:0005634 GO:GO:0005737 GO:GO:0030515
GO:GO:0042254 GO:GO:0003723 GO:GO:0006364 GO:GO:0031120
InterPro:IPR009000 SUPFAM:SSF50447 KO:K14763 GO:GO:0005732
eggNOG:NOG275663 CTD:92345 HOVERGEN:HBG108169 EMBL:AC116731
EMBL:AK144735 EMBL:BC027148 IPI:IPI00987944 RefSeq:NP_001157036.1
UniGene:Mm.334561 ProteinModelPortal:Q3UMQ8 SMR:Q3UMQ8
STRING:Q3UMQ8 PhosphoSite:Q3UMQ8 PRIDE:Q3UMQ8 GeneID:234344
KEGG:mmu:234344 UCSC:uc009lvu.2 HOGENOM:HOG000214085
InParanoid:Q3UMQ8 OrthoDB:EOG42BXB6 NextBio:382097 CleanEx:MM_NAF1
Genevestigator:Q3UMQ8 Uniprot:Q3UMQ8
Length = 489
Score = 202 (76.2 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 44/113 (38%), Positives = 75/113 (66%)
Query: 327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
P+NE ++++ ++ R G I EIFGPV +P+YV+R+NS + I ++ I++ ++ F ++
Sbjct: 215 PVNEDTVIFKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKINDTMYFAPSMK 273
Query: 383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
DF ++ +K +G DAS +ND+E E +FSDDEKE E K+R+K + +G
Sbjct: 274 DFTQYIFTEKLKQDRGSDASWKNDQEPPPEVLDFSDDEKEKEAKQRKKSQIQG 326
Score = 47 (21.6 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 462 PSAPQMDGVGQPLPNQNQHPVSHVPASL 489
P P +G P+ HPV ++P S+
Sbjct: 434 PPPPPPPSMGWAAPSMASHPVLNLPYSM 461
>UNIPROTKB|F1LMR4 [details] [associations]
symbol:Naf1 "H/ACA ribonucleoprotein complex non-core
subunit NAF1" species:10116 "Rattus norvegicus" [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
[GO:0030054 "cell junction" evidence=IEA] [GO:0030515 "snoRNA
binding" evidence=IEA] [GO:0031120 "snRNA pseudouridine synthesis"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
InterPro:IPR007504 Pfam:PF04410 RGD:1306802 GO:GO:0005737
GO:GO:0005813 GO:GO:0030054 GO:GO:0030515 GO:GO:0042254
GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447 GO:GO:0005732
GeneTree:ENSGT00390000004697 IPI:IPI00358278
Ensembl:ENSRNOT00000033916 ArrayExpress:F1LMR4 Uniprot:F1LMR4
Length = 389
Score = 203 (76.5 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 45/113 (39%), Positives = 75/113 (66%)
Query: 327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
P+NE ++++ ++ R G I EIFGPV +P+YV+R+NS I ++ I++ ++ F ++
Sbjct: 187 PVNEDTVIFKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSEHIESKGIKIKDTMYFAPSMK 245
Query: 383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
DF ++ +K +G DAS +ND+E EA +FSDDEKE E K+R+K + +G
Sbjct: 246 DFTQYIFTEKLKQDRGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQG 298
>ZFIN|ZDB-GENE-030131-4546 [details] [associations]
symbol:naf1 "nuclear assembly factor 1 homolog (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0030515 "snoRNA
binding" evidence=IEA] [GO:0031120 "snRNA pseudouridine synthesis"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
InterPro:IPR007504 Pfam:PF04410 ZFIN:ZDB-GENE-030131-4546
GO:GO:0030515 GO:GO:0042254 GO:GO:0031120 InterPro:IPR009000
SUPFAM:SSF50447 KO:K14763 GeneTree:ENSGT00390000004697 CTD:92345
EMBL:BX248111 IPI:IPI00493624 RefSeq:XP_696744.2 UniGene:Dr.78470
Ensembl:ENSDART00000148105 GeneID:568328 KEGG:dre:568328
OMA:KATINEI ArrayExpress:F1QXL6 Bgee:F1QXL6 Uniprot:F1QXL6
Length = 503
Score = 204 (76.9 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 47/112 (41%), Positives = 75/112 (66%)
Query: 327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPA-EIRVGTSISF---VQ 382
PLNE S+L+ +++R +G + EIFGPV P+YV+R+NS ++I +++V + F ++
Sbjct: 280 PLNEESVLF-SKNRNSVGKVFEIFGPVCQPFYVLRFNSHDDIEQKDLKVRDPVYFAPKLK 338
Query: 383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKR 433
DF +++ DK KG DAS +ND+E EA +FSDDE+E K++ K +KR
Sbjct: 339 DFTDYIFTDKLKTLKGSDASWKNDQEPPPEALDFSDDEQERLAKQKLKEQKR 390
>UNIPROTKB|F1RTX5 [details] [associations]
symbol:NAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0030054
"cell junction" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=IEA]
[GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA]
[GO:0030515 "snoRNA binding" evidence=IEA] InterPro:IPR007504
Pfam:PF04410 GO:GO:0005737 GO:GO:0005813 GO:GO:0030054
GO:GO:0030515 GO:GO:0042254 GO:GO:0031120 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0005732 GeneTree:ENSGT00390000004697
OMA:MHNFSLP EMBL:CU694565 Ensembl:ENSSSCT00000009730 Uniprot:F1RTX5
Length = 461
Score = 202 (76.2 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 45/113 (39%), Positives = 75/113 (66%)
Query: 327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
P+NE ++++ ++ R G I EIFGPV +P+YV+R+NS I ++ I++ ++ F ++
Sbjct: 185 PVNEETVIFKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSEHIESKGIKIKDTMYFAPSMK 243
Query: 383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
DF ++ +K +G DAS +ND+E EA +FSDDEKE E K+R+K + +G
Sbjct: 244 DFTQYIFTEKLKQDRGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQG 296
>POMBASE|SPBC30D10.15 [details] [associations]
symbol:SPBC30D10.15 "snoRNP assembly factor Naf1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000493
"box H/ACA snoRNP assembly" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005635 "nuclear envelope" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=NAS] [GO:0006364 "rRNA processing" evidence=IC]
[GO:0030515 "snoRNA binding" evidence=ISM] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0031120 "snRNA
pseudouridine synthesis" evidence=IEA] InterPro:IPR007504
Pfam:PF04410 PomBase:SPBC30D10.15 GO:GO:0005635 GO:GO:0005654
GO:GO:0005730 EMBL:CU329671 GO:GO:0030515 GenomeReviews:CU329671_GR
GO:GO:0030529 GO:GO:0006364 GO:GO:0031120 InterPro:IPR009000
SUPFAM:SSF50447 KO:K14763 eggNOG:NOG275663 PIR:T40181
RefSeq:NP_596270.1 ProteinModelPortal:O14360 STRING:O14360
EnsemblFungi:SPBC30D10.15.1 GeneID:2540349 KEGG:spo:SPBC30D10.15
OMA:HESINSD OrthoDB:EOG4JQ769 NextBio:20801477 GO:GO:0000493
Uniprot:O14360
Length = 516
Score = 200 (75.5 bits), Expect = 8.3e-13, P = 8.3e-13
Identities = 66/228 (28%), Positives = 96/228 (42%)
Query: 329 NEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPA-EIRVGTSISFVQDFANH 387
+E ++L E R +G I E FGPV +PYY+VR+++E E A +G + +V AN
Sbjct: 278 DEKTVLCF-EDRSIIGYIHETFGPVSSPYYIVRFSTEEECSAINACMGRPVFYVPTMANK 336
Query: 388 VLDDKNLYKKGYDASGENDEELS-DEAEFSDDEKEAEYKRRQKMEKRGMDDQKPGXXXX- 445
+ + Y KG DAS DEE++ E EFSDDE E K+ +K KR G
Sbjct: 337 IDPEPLKYIKGSDASNVYDEEINPSEQEFSDDEAEVAAKQLKKKRKRKAKSMVSGNQALP 396
Query: 446 -XXXXXXXXDGMWRNGRPSAPQMDGVGQPLPNQNQHPVSHVPASLDQGNCSTSSIGQGFV 504
RN P G P Q P S SL + + + S+ +
Sbjct: 397 GEANFQSLNQNNVRN-YPFYQTNQGSNPPAKRFTQEPPSSSLYSLSESSINYSTQSPMYY 455
Query: 505 GGTGLVPQLQQM--VQNTSFS----TSPSAVWTDRIPPQQPQGTFFPN 546
P + N S +P + +++ PQG+F PN
Sbjct: 456 NYNYPQPSFPPFHPIYNDSIGYYSQANPQMYYANQVSAPPPQGSFDPN 503
>SGD|S000005068 [details] [associations]
symbol:NAF1 "RNA-binding protein required for the assembly of
box H/ACA snoRNPs" species:4932 "Saccharomyces cerevisiae"
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0000493 "box H/ACA
snoRNP assembly" evidence=IMP;IPI] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0030515 "snoRNA binding"
evidence=IEA] [GO:0031120 "snRNA pseudouridine synthesis"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR007504 Pfam:PF04410 SGD:S000005068 GO:GO:0005654
GO:GO:0030515 EMBL:BK006947 GO:GO:0003723 GO:GO:0030529 EMBL:Z69382
GO:GO:0006364 GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447
RefSeq:NP_014275.3 GeneID:855599 KEGG:sce:YNL124W KO:K14763
EMBL:EF125216 EMBL:EF125217 EMBL:EF125218 EMBL:EF125219
EMBL:EF125220 EMBL:EF125221 EMBL:EF125222 EMBL:EF125223
EMBL:EF125224 EMBL:EF125225 EMBL:EF125226 EMBL:EF125228
RefSeq:NP_014283.3 GeneID:855607 KEGG:sce:YNL116W eggNOG:NOG275663
GeneTree:ENSGT00390000004697 OMA:TVPEDEC OrthoDB:EOG4JQ769
GO:GO:0000493 EMBL:Z71400 PIR:S63065 PDB:2V3M PDBsum:2V3M
ProteinModelPortal:P53919 SMR:P53919 DIP:DIP-4345N IntAct:P53919
MINT:MINT-501196 STRING:P53919 PaxDb:P53919 EnsemblFungi:YNL124W
CYGD:YNL124w EvolutionaryTrace:P53919 NextBio:979759
Genevestigator:P53919 GermOnline:YNL124W Uniprot:P53919
Length = 492
Score = 199 (75.1 bits), Expect = 9.7e-13, P = 9.7e-13
Identities = 71/230 (30%), Positives = 108/230 (46%)
Query: 328 LNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRY-NSENEIPAE--IRVGTSISFVQDF 384
L EGSI + E R +G++ E+FGP++NP+Y ++ +S+ + E +R+G V
Sbjct: 164 LKEGSIFCL-EDRTLIGMLTEVFGPLQNPFYRIKLPDSKKNLFDELKVRLGEKAFIVTPD 222
Query: 385 ANHVLDDKNLYK-KGYDASGENDEEL-SDEAEFSDDEKEAEYKR--RQKMEKRGMDDQKP 440
A H +D L + KG DAS DEEL +E EFSDDEKEA +K+ +Q+ +++ D++K
Sbjct: 223 A-HWIDTFELKRNKGTDASNGYDEELPEEEQEFSDDEKEALFKKMKKQQRQRKKRDNRKL 281
Query: 441 GXXXXXXXXXXXXDGMWRNGRPSAPQMDGVGQPLPNQNQHPVSHVPASLD-QGNCSTSSI 499
R +P A + + PL + P+ H S + + N S
Sbjct: 282 ANDSDNVKVK-------RARQPKANSLPKLVPPLGMSSNAPMQHGYKSRNARENIKRESS 334
Query: 500 GQGFVGGTGLVPQLQQMVQNTSFSTSPSAVWTDRIPPQQPQGTFFPNVFP 549
G+ VP Q Q S + P PQQP G +P P
Sbjct: 335 ATSNRNGSSPVPITQHHQQQFSANNYPF--------PQQPNGMPYPPYSP 376
>ASPGD|ASPL0000057096 [details] [associations]
symbol:AN0728 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0031120 "snRNA pseudouridine
synthesis" evidence=IEA] [GO:0030515 "snoRNA binding" evidence=IEA]
InterPro:IPR007504 Pfam:PF04410 EMBL:BN001308 GO:GO:0030515
GO:GO:0042254 EMBL:AACD01000012 GO:GO:0031120 InterPro:IPR009000
SUPFAM:SSF50447 KO:K14763 eggNOG:NOG275663 OrthoDB:EOG4JQ769
RefSeq:XP_658332.1 ProteinModelPortal:Q5BFF2
EnsemblFungi:CADANIAT00001936 GeneID:2876506 KEGG:ani:AN0728.2
HOGENOM:HOG000205413 OMA:HDEEVGE Uniprot:Q5BFF2
Length = 680
Score = 188 (71.2 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 46/123 (37%), Positives = 70/123 (56%)
Query: 324 KHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISFVQ 382
++ L GS+L + + RV G++ E G V+NP Y VR+ + ++ + GT + +V
Sbjct: 311 EYQVLEAGSLLCLEDRRVA-GVVSETLGRVENPLYAVRFATTADVEKHGLSRGTVVYYVV 369
Query: 383 DFANHVLDDKNLYKKGYDASGENDEELS-DEAEFSDDEKEAEYKRRQKM---EKRGMDDQ 438
D + V KG DAS +DEE+ DE EFSDDE+EAEY+R+ K E++G +Q
Sbjct: 370 DHSTFVFTQPLKGLKGSDASNFHDEEVGEDEVEFSDDEQEAEYRRKLKQKRQERKGAKNQ 429
Query: 439 KPG 441
G
Sbjct: 430 DGG 432
Score = 44 (20.5 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 10/25 (40%), Positives = 10/25 (40%)
Query: 466 QMDGVGQPLPNQNQHPVSHVPASLD 490
Q G GQP P V A LD
Sbjct: 640 QQPGAGQPQPQNQAMNFDQVKAQLD 664
Score = 38 (18.4 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 465 PQMDGVGQPLPNQNQHPVSHV 485
P QP P Q P H+
Sbjct: 594 PYQQAYQQPNPYQQMSPTPHI 614
>CGD|CAL0005870 [details] [associations]
symbol:orf19.494 species:5476 "Candida albicans" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0000493 "box H/ACA snoRNP assembly"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR007504 Pfam:PF04410 CGD:CAL0005870 GO:GO:0030515
GO:GO:0042254 EMBL:AACQ01000055 GO:GO:0031120 InterPro:IPR009000
SUPFAM:SSF50447 KO:K14763 eggNOG:NOG275663 RefSeq:XP_717357.1
ProteinModelPortal:Q5A6R0 STRING:Q5A6R0 GeneID:3641026
KEGG:cal:CaO19.494 Uniprot:Q5A6R0
Length = 612
Score = 159 (61.0 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 43/115 (37%), Positives = 64/115 (55%)
Query: 328 LNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPA-EIRVGTSISFVQDFAN 386
L E SI E R +G + EIFG V+ P Y V++NSE + + G ++ +V +
Sbjct: 321 LQEKSIFCF-EDRTVIGPLFEIFGRVQQPVYSVKFNSEEQFSKFKESKGKTVYYVVPDSQ 379
Query: 387 HVLDDKNLYKKGYDASGENDEEL-SDEAEFSDDEKEAEYK--RRQKMEKRGMDDQ 438
+ D + KG DAS +DEEL +E E+SDDEKE+ K +++K K+ D Q
Sbjct: 380 FLYTDSIKHIKGTDASNCHDEELPEEEQEYSDDEKESAAKSAKKKKKNKKTKDKQ 434
>UNIPROTKB|G4N8S8 [details] [associations]
symbol:MGG_10116 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005635 "nuclear envelope"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0006461 "protein complex assembly"
evidence=ISS] [GO:0016074 "snoRNA metabolic process" evidence=ISS]
InterPro:IPR007504 Pfam:PF04410 GO:GO:0005635 GO:GO:0005654
GO:GO:0005730 GO:GO:0006461 GO:GO:0030515 GO:GO:0042254
GO:GO:0003723 EMBL:CM001234 GO:GO:0016074 GO:GO:0031120
InterPro:IPR009000 SUPFAM:SSF50447 KO:K14763 RefSeq:XP_003717393.1
ProteinModelPortal:G4N8S8 EnsemblFungi:MGG_10116T0 GeneID:2681727
KEGG:mgr:MGG_10116 Uniprot:G4N8S8
Length = 656
Score = 151 (58.2 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 46/165 (27%), Positives = 76/165 (46%)
Query: 343 LGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISFVQDFANHVLDDKNLYKKGYDA 401
+ I ++ G V P Y++R+ + ++ E + + + A VL +KGYDA
Sbjct: 323 IAAIADVIGSVLRPMYILRFATSEDVEKEGLTTDMPVFYSPQHAQVVLTRALRQQKGYDA 382
Query: 402 SGENDEELS-DEAEFSDDEKEAEYKRRQKMEKRGMDDQKPGXXXXXXXXXXXXDGMWRNG 460
S +DEE+ ++ EFSDDE+E +KR+QKM+K+ + + G G +G
Sbjct: 383 SNLHDEEIPMEDQEFSDDEQEQAHKRQQKMKKK---NNRGGARGGRGGAQSREMGSGHHG 439
Query: 461 RPS-APQMDGVGQPLPNQNQHPVSHV--PASLDQGNCSTSSIGQG 502
S A VG + + P + PA+ G S+S G
Sbjct: 440 PSSGAAASADVGLNYDDDDDGPYKPLSRPANFGMGAPSSSEGATG 484
Score = 46 (21.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 17/62 (27%), Positives = 17/62 (27%)
Query: 535 PPQQPQGTFFPNVFPTNGLP---WXXXXXXXXXXXXXXXCGLFLQQSSQMSLPNVGL-PG 590
PP P G P V P G P W QQ P G PG
Sbjct: 594 PPAPPMGQHAPPVAPPVGQPQANWQAMAALYANPAFQQALRQAQQQQPPQGQPGWGQGPG 653
Query: 591 GP 592
P
Sbjct: 654 AP 655
>TAIR|locus:2125556 [details] [associations]
symbol:AT4G03380 "AT4G03380" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161496
EMBL:AC005275 IPI:IPI00529439 PIR:H85042 RefSeq:NP_192247.1
UniGene:At.50318 ProteinModelPortal:Q9ZQZ3
EnsemblPlants:AT4G03380.1 GeneID:827946 KEGG:ath:AT4G03380
TAIR:At4g03380 eggNOG:NOG276862 ProtClustDB:CLSN2916122
Genevestigator:Q9ZQZ3 Uniprot:Q9ZQZ3
Length = 200
Score = 128 (50.1 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 325 HNPLNEGSILWITESRVPLGLIDE-IFGPVKNPYYVVRY-NSENEIPAEIRVG-TSISFV 381
H PLN G++L ITE++VPLG +D FG V NP Y+V+ +SE +IP E+R G S SF
Sbjct: 28 HKPLNVGTMLLITETKVPLGRVDGYFFGSVTNPDYIVKVEDSEMQIP-EVRQGGPSGSFG 86
Query: 382 QDFA 385
D +
Sbjct: 87 VDLS 90
>DICTYBASE|DDB_G0276085 [details] [associations]
symbol:DDB_G0276085 "H/ACA ribonucleoprotein complex
non-core subunit NAF1" species:44689 "Dictyostelium discoideum"
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0031120 "snRNA
pseudouridine synthesis" evidence=IEA] [GO:0030515 "snoRNA binding"
evidence=IEA] InterPro:IPR007504 Pfam:PF04410
dictyBase:DDB_G0276085 GO:GO:0030515 EMBL:AAFI02000014
GO:GO:0042254 GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447
eggNOG:NOG275663 RefSeq:XP_643286.1 ProteinModelPortal:Q75JJ6
EnsemblProtists:DDB0169488 GeneID:8620329 KEGG:ddi:DDB_G0276085
InParanoid:Q75JJ6 OMA:DIDSIVC Uniprot:Q75JJ6
Length = 812
Score = 138 (53.6 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 372 IRVGTSISFVQ--DFANHVLDDKNLYKKGYDASGENDEELSD-EAEFSDDEKEAEYKRRQ 428
++ T I +V D + V+ + +Y KG+DAS END+EL + E +FSDDEKE E+K ++
Sbjct: 533 LQADTKIYYVNQPDLSKFVIASQ-IYTKGFDASNENDDELEENEMDFSDDEKEREFKAQR 591
Query: 429 KMEKRGMDDQK 439
KM+K +K
Sbjct: 592 KMKKNNNKKRK 602
Score = 38 (18.4 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 623 QQPACPSVNASQGILPPNGLHVKQNNLQQAAVLPGSIEAPQQ 664
QQP ++N Q P L+ QN + P S + PQQ
Sbjct: 726 QQPQPNNLNKPQQQFQPQPLYRPQNTFKPQ---PQS-QQPQQ 763
>FB|FBgn0032701 [details] [associations]
symbol:CG10341 species:7227 "Drosophila melanogaster"
[GO:0030515 "snoRNA binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0031120 "snRNA pseudouridine
synthesis" evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR007504 Pfam:PF04410 GO:GO:0005634 EMBL:AE014134
GO:GO:0022008 GO:GO:0030515 GO:GO:0042254 GO:GO:0003723
GO:GO:0006364 GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447
KO:K14763 GO:GO:0005732 EMBL:AY051589 RefSeq:NP_609898.1
UniGene:Dm.23213 ProteinModelPortal:Q9VJ62 SMR:Q9VJ62 IntAct:Q9VJ62
MINT:MINT-769614 STRING:Q9VJ62 PaxDb:Q9VJ62
EnsemblMetazoa:FBtr0081097 GeneID:35125 KEGG:dme:Dmel_CG10341
UCSC:CG10341-RA FlyBase:FBgn0032701 eggNOG:NOG275663
GeneTree:ENSGT00390000004697 InParanoid:Q9VJ62 OMA:TVPEDEC
OrthoDB:EOG49W0XB PhylomeDB:Q9VJ62 GenomeRNAi:35125 NextBio:791988
Bgee:Q9VJ62 Uniprot:Q9VJ62
Length = 564
Score = 122 (48.0 bits), Expect = 0.00036, P = 0.00036
Identities = 31/106 (29%), Positives = 57/106 (53%)
Query: 332 SILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEI-PAEIRVGTSISFVQ--DFANHV 388
++L++ + R LG + ++ G V +P Y VR+NS +I I++G + + V
Sbjct: 315 TVLFLEKGRKVLGEVFDVLGQVSDPLYCVRFNSNKQILDRGIKIGDVVYCAPKTEHTQFV 374
Query: 389 LDDKNLYKKGYDASGEND-EELSDEAEFSDDEKEAEYKRRQKMEKR 433
+ K + +G DAS E+D E + + SDDE+E E + Q+ ++
Sbjct: 375 ILSKLMQVRGSDASWEHDVEPPARYVDHSDDEEEREARAEQRKRRQ 420
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.133 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 695 512 0.00087 119 3 11 23 0.49 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 614 (65 KB)
Total size of DFA: 297 KB (2153 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 49.80u 0.12s 49.92t Elapsed: 00:00:02
Total cpu time: 49.80u 0.12s 49.92t Elapsed: 00:00:02
Start: Tue May 21 00:51:53 2013 End: Tue May 21 00:51:55 2013