BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005475
(695 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96HR8|NAF1_HUMAN H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Homo
sapiens GN=NAF1 PE=1 SV=2
Length = 494
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 118/193 (61%), Gaps = 10/193 (5%)
Query: 256 ISVVDVDIDGGD--EIDGCAREGPIRSKNELQV--LPLVPQVNVVLQPHHQMLPVGVVLS 311
IS+ V DG D +I+ + P+++K+EL + LP V ++ ++L ++ P+G+V S
Sbjct: 147 ISLPPVLSDGDDDLQIEKENKNFPLKTKDELLLNELPSVEELTIILPEDIELKPLGMVSS 206
Query: 312 VRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE 371
+ VI+E P+NE ++++ ++ R G I EIFGPV +P+YV+R+NS + I ++
Sbjct: 207 IIEQLVIIESMTNLPPVNEETVIFKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSDHIESK 265
Query: 372 -IRVGTSISF---VQDFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKR 426
I++ ++ F ++DF ++ +K KG DAS +ND+E EA +FSDDEKE E K+
Sbjct: 266 GIKIKETMYFAPSMKDFTQYIFTEKLKQDKGSDASWKNDQEPPPEALDFSDDEKEKEAKQ 325
Query: 427 RQKMEKRGMDDQK 439
R+K + +G K
Sbjct: 326 RKKSQIQGRKKLK 338
>sp|Q52KK4|NAF1_RAT H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Rattus
norvegicus GN=Naf1 PE=2 SV=1
Length = 457
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 102/165 (61%), Gaps = 8/165 (4%)
Query: 277 PIRSKNELQV--LPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSIL 334
P+++K+EL + LP V ++ V L + P+G V S+ VI+E P+NE +++
Sbjct: 135 PLKTKDELLLNELPSVEELTVTLPEDIALKPLGKVSSIIEQLVIIESMTNIPPVNEDTVI 194
Query: 335 WITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQDFANHVLD 390
+ ++ R G I EIFGPV +P+YV+R+NS I ++ I++ ++ F ++DF ++
Sbjct: 195 FKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSEHIESKGIKIKDTMYFAPSMKDFTQYIFT 253
Query: 391 DKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
+K +G DAS +ND+E EA +FSDDEKE E K+R+K + +G
Sbjct: 254 EKLKQDRGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQG 298
>sp|Q3UMQ8|NAF1_MOUSE H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Mus
musculus GN=Naf1 PE=1 SV=2
Length = 489
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 103/165 (62%), Gaps = 8/165 (4%)
Query: 277 PIRSKNELQV--LPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSIL 334
P+++K+EL + LP V ++ V+L + P+G V S+ VI+E P+NE +++
Sbjct: 163 PLKTKDELLLNELPSVEELTVILPEDIALKPLGKVSSIIEQLVIIESVTNIPPVNEDTVI 222
Query: 335 WITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQDFANHVLD 390
+ ++ R G I EIFGPV +P+YV+R+NS + I ++ I++ ++ F ++DF ++
Sbjct: 223 FKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKINDTMYFAPSMKDFTQYIFT 281
Query: 391 DKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
+K +G DAS +ND+E E +FSDDEKE E K+R+K + +G
Sbjct: 282 EKLKQDRGSDASWKNDQEPPPEVLDFSDDEKEKEAKQRKKSQIQG 326
>sp|O14360|NAF1_SCHPO H/ACA ribonucleoprotein complex non-core subunit NAF1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=naf1 PE=1 SV=1
Length = 516
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 5/132 (3%)
Query: 295 VVLQPHHQMLPVGVVLSVRGVQVIVEGA--EKHNPLNEGSILWITESRVPLGLIDEIFGP 352
+VLQP+ + P+G ++ V +V+V+ ++ +E ++L E R +G I E FGP
Sbjct: 242 IVLQPNSLIEPLGKIIQVLKREVVVKSDIDDEKIVFDEKTVLCF-EDRSIIGYIHETFGP 300
Query: 353 VKNPYYVVRYNSENEIPA-EIRVGTSISFVQDFANHVLDDKNLYKKGYDASGENDEELS- 410
V +PYY+VR+++E E A +G + +V AN + + Y KG DAS DEE++
Sbjct: 301 VSSPYYIVRFSTEEECSAINACMGRPVFYVPTMANKIDPEPLKYIKGSDASNVYDEEINP 360
Query: 411 DEAEFSDDEKEA 422
E EFSDDE E
Sbjct: 361 SEQEFSDDEAEV 372
>sp|P53919|NAF1_YEAST H/ACA ribonucleoprotein complex non-core subunit NAF1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NAF1 PE=1 SV=1
Length = 492
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 155/314 (49%), Gaps = 34/314 (10%)
Query: 263 IDGGDEIDGCAREGPIRSKNEL--QVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVE 320
I+ DE + + GPI SKNE+ + +P +P+ + + + P+GV+ S +I+
Sbjct: 96 IENEDEDEDPSPSGPILSKNEILEETVPELPE-DYEISEKTIITPIGVLKSAFENNIIIH 154
Query: 321 GA---EKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRY-NSENEIPAEIRVGT 376
EK L EGSI + E R +G++ E+FGP++NP+Y ++ +S+ + E++V
Sbjct: 155 ATMSGEKRV-LKEGSIFCL-EDRTLIGMLTEVFGPLQNPFYRIKLPDSKKNLFDELKVRL 212
Query: 377 -SISFVQDFANHVLDDKNLYK-KGYDAS-GENDEELSDEAEFSDDEKEAEY--KRRQKME 431
+F+ H +D L + KG DAS G ++E +E EFSDDEKEA + ++Q+ +
Sbjct: 213 GEKAFIVTPDAHWIDTFELKRNKGTDASNGYDEELPEEEQEFSDDEKEALFKKMKKQQRQ 272
Query: 432 KRGMDDQKPGNRKNNRKKVKNKDGMWRNGRPSAPQMDGVGQPLPNQNQHPVSHVPASLD- 490
++ D++K N +N K + R +P A + + PL + P+ H S +
Sbjct: 273 RKKRDNRKLANDSDNVK-------VKRARQPKANSLPKLVPPLGMSSNAPMQHGYKSRNA 325
Query: 491 QGNCSTSSIGQGFVGGTGLVPQLQQMVQNTSFSTSPSAVWTDRIPPQQPQGTFFPNVFPT 550
+ N S G+ VP Q Q S + P PQQP G +P P
Sbjct: 326 RENIKRESSATSNRNGSSPVPITQHHQQQFSANNYPF--------PQQPNGMPYP---PY 374
Query: 551 NGLPWPSQNYQQPP 564
+ P P+ N+Q PP
Sbjct: 375 SPFPQPT-NFQYPP 387
>sp|A6ZRW0|NAF1_YEAS7 H/ACA ribonucleoprotein complex non-core subunit NAF1
OS=Saccharomyces cerevisiae (strain YJM789) GN=NAF1 PE=3
SV=1
Length = 492
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 155/314 (49%), Gaps = 34/314 (10%)
Query: 263 IDGGDEIDGCAREGPIRSKNEL--QVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVE 320
I+ DE + + GPI SKNE+ + +P +P+ + + + P+GV+ S +I+
Sbjct: 96 IENEDEDEDPSPSGPILSKNEILEETVPELPE-DYEISEKTIITPIGVLKSAFENNIIIH 154
Query: 321 GA---EKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRY-NSENEIPAEIRVGT 376
EK L EGSI + E R +G++ E+FGP++NP+Y ++ +S+ + E++V
Sbjct: 155 ATMSGEKRV-LKEGSIFCL-EDRTLIGMLTEVFGPLQNPFYRIKLPDSKKNLFDELKVRL 212
Query: 377 -SISFVQDFANHVLDDKNLYK-KGYDAS-GENDEELSDEAEFSDDEKEAEY--KRRQKME 431
+F+ H +D L + KG DAS G ++E +E EFSDDEKEA + ++Q+ +
Sbjct: 213 GEKAFIVTPDAHWIDTFELKRNKGTDASNGYDEELPEEEQEFSDDEKEALFKKMKKQQQQ 272
Query: 432 KRGMDDQKPGNRKNNRKKVKNKDGMWRNGRPSAPQMDGVGQPLPNQNQHPVSHVPASLD- 490
++ D++K N +N K + R +P A + + PL + P+ H S +
Sbjct: 273 RKKRDNRKLANDSDNVK-------VKRARQPKANSLPKLVPPLGMSSNAPMQHGYKSRNA 325
Query: 491 QGNCSTSSIGQGFVGGTGLVPQLQQMVQNTSFSTSPSAVWTDRIPPQQPQGTFFPNVFPT 550
+ N S G+ VP Q Q S + P PQQP G +P P
Sbjct: 326 RENIKRESSATSNRNGSSPVPITQLHQQQFSANNYPF--------PQQPNGMPYP---PY 374
Query: 551 NGLPWPSQNYQQPP 564
+ P P+ N+Q PP
Sbjct: 375 SPFPQPT-NFQYPP 387
>sp|Q9VJ62|NAF1_DROME H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Drosophila
melanogaster GN=CG10341 PE=1 SV=2
Length = 564
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 270 DGCAREGPIRSKNELQV--LPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNP 327
D R P + + E+ + LP + Q+ + + P + + +G V S+ V+V
Sbjct: 252 DRSRRRQPPKVRGEMLLDDLPPIHQLEITV-PEDECVELGKVQSIVDQLVLVSVLPNSML 310
Query: 328 LNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISFV--QDF 384
+ ++L++ + R LG + ++ G V +P Y VR+NS +I I++G + +
Sbjct: 311 FDLDTVLFLEKGRKVLGEVFDVLGQVSDPLYCVRFNSNKQILDRGIKIGDVVYCAPKTEH 370
Query: 385 ANHVLDDKNLYKKGYDASGENDEE 408
V+ K + +G DAS E+D E
Sbjct: 371 TQFVILSKLMQVRGSDASWEHDVE 394
>sp|A2R7P5|NST1_ASPNC Stress response protein nst1 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=nst1 PE=3 SV=1
Length = 1201
Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 113/279 (40%), Gaps = 51/279 (18%)
Query: 396 KKGYDASGENDEELSDEAE-----FSDDEKEAEYKRRQKMEKRGMDDQKPGNRKNNRKKV 450
K+ + + E L EAE + E++AE +R+Q+ +K ++ R+N ++
Sbjct: 604 KREAERKAQEAERLRKEAEKQKRLREERERQAEIERKQREQKELEKKRREEARQNELREK 663
Query: 451 KNKDGMWRNGRPSAPQMDGVGQPLPNQNQHPVSH-----VPASLDQGNCSTSSI-GQGFV 504
K KD R R +AP+ D GQ + VSH +PASL + + +
Sbjct: 664 KTKDERERKLREAAPKTDYEGQEKRDPQAKRVSHTGPVPIPASLQHAQALPAYLQSPHYQ 723
Query: 505 GGTGLVPQL------QQMVQNTSFSTSPSAVWTDRIPPQQPQGTFFPNVFPTNGLPWPS- 557
T +VP+ +Q Q S ++SP + P Q ++ P + P S
Sbjct: 724 IATPIVPKAPTPARPRQPSQQGSHTSSPRSQPASTEPSQV-------SISPRSMAPSQSS 776
Query: 558 --------QNYQQPP--YQPMMNCGLFLQQSSQMSLPNVGLPGGPSNFFAGPTYAPWQGL 607
Q + QPP + P + L S + N P G S P+ P GL
Sbjct: 777 GASSVTSKQGHGQPPLLHHPQPSTPL-----SPLGALNRSHPPGFS-----PSNPPGLGL 826
Query: 608 LGQNGLNQTIGQGLPQQP--ACPSVNASQGILPPNGLHV 644
+ + IG LP P + P +N +G PNGL V
Sbjct: 827 VAR----PPIGHELPSYPPHSGPLMNQLRGFPAPNGLPV 861
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 297,656,359
Number of Sequences: 539616
Number of extensions: 15246875
Number of successful extensions: 172671
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1666
Number of HSP's successfully gapped in prelim test: 1918
Number of HSP's that attempted gapping in prelim test: 96908
Number of HSP's gapped (non-prelim): 38124
length of query: 695
length of database: 191,569,459
effective HSP length: 125
effective length of query: 570
effective length of database: 124,117,459
effective search space: 70746951630
effective search space used: 70746951630
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)