Query 005475
Match_columns 695
No_of_seqs 169 out of 309
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 00:01:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2236 Uncharacterized conser 100.0 4.3E-56 9.3E-61 472.2 24.4 178 244-438 163-344 (483)
2 PF04410 Gar1: Gar1/Naf1 RNA b 100.0 2.1E-38 4.5E-43 297.7 7.8 148 284-432 4-154 (154)
3 PRK13149 H/ACA RNA-protein com 99.4 6E-13 1.3E-17 113.1 8.8 71 303-380 1-72 (73)
4 KOG3262 H/ACA small nucleolar 99.0 3.9E-10 8.5E-15 111.4 4.0 78 302-383 52-130 (215)
5 COG3277 GAR1 RNA-binding prote 99.0 2.5E-09 5.4E-14 96.5 8.6 77 303-383 1-78 (98)
6 KOG2236 Uncharacterized conser 97.1 0.011 2.4E-07 65.9 15.4 15 114-128 72-86 (483)
7 KOG1999 RNA polymerase II tran 95.5 0.007 1.5E-07 71.9 2.4 9 397-405 514-522 (1024)
8 PF04931 DNA_pol_phi: DNA poly 92.1 0.17 3.7E-06 59.4 4.8 9 249-257 728-736 (784)
9 KOG3598 Thyroid hormone recept 92.0 0.48 1E-05 59.2 8.4 27 613-639 2039-2067(2220)
10 KOG1830 Wiskott Aldrich syndro 90.2 39 0.00084 38.7 20.1 32 425-458 174-205 (518)
11 KOG1984 Vesicle coat complex C 89.8 4.3 9.3E-05 49.2 13.1 37 642-681 135-171 (1007)
12 KOG0132 RNA polymerase II C-te 88.7 22 0.00047 43.1 17.6 36 534-571 653-688 (894)
13 PF06991 Prp19_bind: Splicing 87.9 0.36 7.9E-06 51.1 2.7 11 250-260 112-122 (276)
14 KOG1984 Vesicle coat complex C 87.2 39 0.00084 41.6 18.5 23 473-495 15-37 (1007)
15 KOG1999 RNA polymerase II tran 83.6 0.66 1.4E-05 56.1 2.3 8 315-322 211-218 (1024)
16 KOG4849 mRNA cleavage factor I 76.4 1.1E+02 0.0023 34.7 15.7 28 542-570 257-288 (498)
17 KOG2130 Phosphatidylserine-spe 75.8 1.4 3E-05 48.3 1.4 13 26-38 135-147 (407)
18 PF04147 Nop14: Nop14-like fam 75.7 1.8 4E-05 51.8 2.6 31 457-488 537-567 (840)
19 KOG2375 Protein interacting wi 74.3 29 0.00062 42.0 11.6 25 339-363 415-439 (756)
20 KOG1830 Wiskott Aldrich syndro 74.2 98 0.0021 35.7 14.9 10 413-422 138-147 (518)
21 KOG0132 RNA polymerase II C-te 73.9 1.5E+02 0.0033 36.4 17.1 7 404-410 504-510 (894)
22 KOG1924 RhoA GTPase effector D 73.7 14 0.00031 44.8 8.9 12 580-591 568-579 (1102)
23 PF10446 DUF2457: Protein of u 72.6 3.3 7.1E-05 46.9 3.4 7 278-284 101-107 (458)
24 KOG0307 Vesicle coat complex C 72.5 1.7E+02 0.0036 37.0 17.4 21 558-578 800-820 (1049)
25 KOG4849 mRNA cleavage factor I 71.5 85 0.0018 35.5 13.5 34 653-686 308-350 (498)
26 KOG1924 RhoA GTPase effector D 67.7 23 0.0005 43.2 8.8 11 24-34 50-60 (1102)
27 KOG1189 Global transcriptional 67.3 3 6.5E-05 49.9 1.8 12 250-261 925-936 (960)
28 KOG3064 RNA-binding nuclear pr 63.2 2.9 6.2E-05 44.7 0.6 10 159-168 172-181 (303)
29 KOG0262 RNA polymerase I, larg 61.8 7.8 0.00017 48.7 3.9 10 504-513 1624-1633(1640)
30 COG3881 PRC-barrel domain cont 60.6 11 0.00024 38.0 4.1 48 300-349 49-106 (176)
31 PF10500 SR-25: Nuclear RNA-sp 57.5 11 0.00024 39.4 3.6 10 315-324 182-191 (225)
32 KOG4592 Uncharacterized conser 53.6 1.1E+02 0.0025 36.6 11.0 22 502-531 90-111 (728)
33 KOG4368 Predicted RNA binding 52.1 2.6E+02 0.0056 33.7 13.4 21 545-568 375-395 (757)
34 PF04147 Nop14: Nop14-like fam 51.7 16 0.00035 44.2 4.2 7 325-331 455-461 (840)
35 KOG3600 Thyroid hormone recept 51.6 1.5E+02 0.0032 38.5 11.9 43 390-432 706-759 (2238)
36 KOG0943 Predicted ubiquitin-pr 51.6 7.1 0.00015 49.1 1.3 10 161-170 1650-1659(3015)
37 PTZ00415 transmission-blocking 50.3 5.8 0.00013 51.2 0.3 32 641-674 764-799 (2849)
38 KOG1985 Vesicle coat complex C 50.1 1.6E+02 0.0034 36.5 11.7 17 565-583 89-105 (887)
39 KOG0119 Splicing factor 1/bran 46.8 4E+02 0.0086 31.5 13.7 48 582-637 426-473 (554)
40 PRK07594 type III secretion sy 46.6 77 0.0017 36.0 8.2 75 295-381 11-85 (433)
41 KOG4368 Predicted RNA binding 45.7 1.2E+02 0.0027 36.1 9.7 15 354-368 190-204 (757)
42 KOG1985 Vesicle coat complex C 45.6 2.5E+02 0.0054 34.9 12.4 10 625-634 120-129 (887)
43 KOG0307 Vesicle coat complex C 40.5 5.3E+02 0.012 32.9 14.3 10 306-315 500-509 (1049)
44 KOG0772 Uncharacterized conser 39.7 22 0.00047 41.6 2.7 59 526-601 387-447 (641)
45 COG5406 Nucleosome binding fac 39.1 18 0.00039 43.2 2.0 13 43-55 688-702 (1001)
46 TIGR01628 PABP-1234 polyadenyl 39.0 2E+02 0.0043 32.6 10.0 10 48-57 14-23 (562)
47 KOG0650 WD40 repeat nucleolar 38.9 23 0.00049 42.0 2.7 15 405-419 297-313 (733)
48 KOG4264 Nucleo-cytoplasmic pro 38.7 21 0.00045 41.7 2.3 18 656-673 610-627 (694)
49 PTZ00415 transmission-blocking 36.7 9.4 0.0002 49.5 -0.7 15 349-363 307-321 (2849)
50 COG5180 PBP1 Protein interacti 36.4 1E+02 0.0022 36.1 7.1 95 485-594 508-623 (654)
51 KOG3130 Uncharacterized conser 34.8 32 0.0007 39.2 3.0 27 228-254 260-286 (514)
52 KOG4101 Cysteine-rich hydropho 34.7 22 0.00047 35.6 1.5 23 296-318 68-90 (175)
53 PF03344 Daxx: Daxx Family; I 32.9 14 0.00031 44.0 0.0 9 45-53 295-303 (713)
54 TIGR00962 atpA proton transloc 31.6 2.1E+02 0.0046 33.2 8.8 71 299-381 20-90 (501)
55 KOG3064 RNA-binding nuclear pr 31.6 28 0.00062 37.6 1.9 21 189-209 245-265 (303)
56 KOG1420 Ca2+-activated K+ chan 30.0 28 0.00062 41.3 1.7 10 415-424 617-626 (1103)
57 KOG0699 Serine/threonine prote 29.7 27 0.00058 39.5 1.3 10 248-257 306-315 (542)
58 KOG2140 Uncharacterized conser 29.2 28 0.00061 41.0 1.4 9 120-128 590-598 (739)
59 KOG2428 Uncharacterized conser 29.2 60 0.0013 37.2 3.9 20 216-235 408-427 (443)
60 KOG1142 Transcription initiati 28.9 1.4E+02 0.0031 32.2 6.4 45 533-578 60-115 (258)
61 PF03344 Daxx: Daxx Family; I 28.9 19 0.0004 43.2 0.0 10 28-37 205-214 (713)
62 KOG0772 Uncharacterized conser 28.8 46 0.00099 39.1 3.0 8 355-362 254-261 (641)
63 COG4547 CobT Cobalamin biosynt 28.6 26 0.00055 40.6 1.0 21 109-129 122-142 (620)
64 KOG2051 Nonsense-mediated mRNA 28.1 32 0.00069 42.9 1.7 10 379-388 1047-1056(1128)
65 PF05918 API5: Apoptosis inhib 27.7 20 0.00043 41.8 0.0 8 552-559 458-465 (556)
66 PF03066 Nucleoplasmin: Nucleo 27.5 11 0.00024 36.8 -1.8 58 147-216 92-149 (149)
67 KOG3620 Uncharacterized conser 26.9 74 0.0016 40.7 4.4 34 421-454 1258-1291(1626)
68 KOG0119 Splicing factor 1/bran 26.7 6.6E+02 0.014 29.8 11.4 10 313-322 173-182 (554)
69 PRK03760 hypothetical protein; 26.6 1.1E+02 0.0025 28.7 4.7 48 333-381 63-115 (117)
70 KOG1076 Translation initiation 26.6 23 0.0005 42.6 0.2 8 275-282 221-228 (843)
71 PF14179 YppG: YppG-like prote 26.5 96 0.0021 29.6 4.2 22 546-567 1-23 (112)
72 PF04889 Cwf_Cwc_15: Cwf15/Cwc 25.8 78 0.0017 33.4 3.8 15 195-209 140-154 (244)
73 KOG2591 c-Mpl binding protein, 25.2 3.4E+02 0.0073 32.6 8.9 50 537-606 290-340 (684)
74 PF02724 CDC45: CDC45-like pro 24.9 24 0.00051 41.4 -0.1 6 354-359 354-359 (622)
75 KOG1856 Transcription elongati 24.8 35 0.00076 43.0 1.3 9 489-497 407-415 (1299)
76 KOG0262 RNA polymerase I, larg 24.5 44 0.00095 42.7 2.0 12 119-130 1225-1236(1640)
77 PHA02664 hypothetical protein; 24.4 21 0.00046 39.7 -0.6 10 4-13 137-146 (534)
78 KOG1991 Nuclear transport rece 23.5 58 0.0012 40.5 2.7 8 276-283 953-960 (1010)
79 KOG0943 Predicted ubiquitin-pr 23.3 49 0.0011 42.4 2.0 12 232-243 1729-1740(3015)
80 KOG3973 Uncharacterized conser 23.1 5.4E+02 0.012 29.5 9.6 28 574-602 321-348 (465)
81 KOG0270 WD40 repeat-containing 22.9 76 0.0016 36.5 3.3 17 244-260 121-137 (463)
82 KOG3753 Circadian clock protei 22.8 1.7E+03 0.037 28.6 16.3 19 417-435 710-728 (1114)
83 COG5129 MAK16 Nuclear protein 22.8 46 0.00099 35.5 1.5 6 119-124 157-162 (303)
84 PF05793 TFIIF_alpha: Transcri 22.8 28 0.00061 40.0 0.0 8 415-422 362-369 (527)
85 PRK13343 F0F1 ATP synthase sub 22.7 3.9E+02 0.0084 31.3 8.8 70 300-381 22-91 (502)
86 PF04871 Uso1_p115_C: Uso1 / p 22.5 60 0.0013 31.3 2.1 14 211-224 99-112 (136)
87 PF05285 SDA1: SDA1; InterPro 22.2 59 0.0013 35.2 2.2 9 418-426 234-242 (324)
88 CHL00059 atpA ATP synthase CF1 22.1 3.4E+02 0.0074 31.6 8.2 67 303-381 4-70 (485)
89 PRK09281 F0F1 ATP synthase sub 22.0 3.6E+02 0.0079 31.4 8.5 70 300-381 22-91 (502)
90 KOG3116 Predicted C3H1-type Zn 21.9 40 0.00087 34.0 0.8 9 72-80 36-44 (177)
91 KOG4307 RNA binding protein RB 21.7 5.2E+02 0.011 32.0 9.7 29 656-684 804-834 (944)
92 KOG4822 Predicted nuclear memb 21.2 3.1E+02 0.0067 35.6 7.9 16 57-72 1132-1147(1906)
93 TIGR03324 alt_F1F0_F1_al alter 20.5 4.5E+02 0.0097 30.8 8.7 71 299-381 21-91 (497)
94 KOG4274 Positive cofactor 2 (P 20.3 2.1E+02 0.0046 34.3 6.1 37 607-643 216-257 (742)
No 1
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.3e-56 Score=472.19 Aligned_cols=178 Identities=44% Similarity=0.654 Sum_probs=159.4
Q ss_pred CCCCchhhHhhhccccccCcCCCCcCCCCCCCCCcccccC--cCcCCCCCCCceecCCCCceeecceeeeeecceEEEec
Q 005475 244 DDEDDEEDEVEMISVVDVDIDGGDEIDGCAREGPIRSKNE--LQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEG 321 (695)
Q Consensus 244 dd~~eeed~~~m~~~~d~d~Deeed~~~~a~ggPiRTKNE--l~elPPvppldisI~pd~~I~pIGtIsSIVdn~VIVkS 321 (695)
+++.+++|..++++|+ .|++|+|| |++||||++++|+|+++..|++||+|++||+++|||++
T Consensus 163 ~~d~dddd~~e~~s~~----------------~p~ktr~e~ll~elPpv~~~~i~l~e~~~~~plG~V~svv~~~VII~s 226 (483)
T KOG2236|consen 163 DSDFDDDDVKEDRSPS----------------KPQKTRNEHLLDELPPVEPEEITLEEKGELLPLGKVSSVVDQQVIIES 226 (483)
T ss_pred cccccccccccccccc----------------cCCCCCCchhhhcCCCCCccceeecCCcceechhHHHHHhhhceEEEe
Confidence 3344555555666655 45555555 57999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCeEEEccCCeeeEEeeeeecCCCCcEEEEEcCCCCCcc-cccccCcEEEeccCccceeeccccccccccc
Q 005475 322 AEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIP-AEIRVGTSISFVQDFANHVLDDKNLYKKGYD 400 (695)
Q Consensus 322 ~~e~~VLDeGSVLCLtEDRtvIGkV~EVFGPVk~PyYsVRFnS~eEI~-~~LkvGtkVYYVpe~S~fV~t~~L~~~KGSD 400 (695)
+....||+++||||+ ++|++||.|+||||||++|||+||||+.++|. .+|++|++|||||+||+|||+.+|++.||||
T Consensus 227 ~~~~~vlde~Svlf~-edR~~lG~I~EiFGpV~~P~YvvRFnS~~e~~~~gi~ig~~vy~ap~~tq~I~~~klkq~kGsD 305 (483)
T KOG2236|consen 227 TCNKEVLDEDSVLFL-EDRTALGQIFEIFGPVKNPYYVVRFNSEEEISFLGICIGEKVYYAPDFTQEIFTEKLKQGKGSD 305 (483)
T ss_pred ccCcccccccceEEe-eccccchhhhhhhcccCCceEEEecCchhhhhhhccccCCeeEecCcchhhhcchhhhhccccc
Confidence 988899999999998 78999999999999999999999999999987 6899999999999999999999999999999
Q ss_pred cCCCCCCCCC-CCcCCCchHHHHHHHHHHHhhhcCCCCC
Q 005475 401 ASGENDEELS-DEAEFSDDEKEAEYKRRQKMEKRGMDDQ 438 (695)
Q Consensus 401 ASN~~DEEvp-dE~EFSDDEkEae~Kr~~K~kKRg~~~q 438 (695)
|||.||||++ +++|||||||||+||++||++||+.+..
T Consensus 306 ASn~~DeE~p~~e~dfSDDEkEaeak~~kKQrk~r~~~k 344 (483)
T KOG2236|consen 306 ASNRYDEEIPPREQDFSDDEKEAEAKQMKKQRKRRSKVK 344 (483)
T ss_pred ccccccccCChhhhccchHHHHHHHHHHHHHhhcccccc
Confidence 9999999999 7899999999999999999877766533
No 2
>PF04410 Gar1: Gar1/Naf1 RNA binding region; InterPro: IPR007504 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs. More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. This entry represents Gar1 and Naf1. Naf1 is an RNA-binding protein required for the maturation of box H/ACA snoRNPs complex and ribosome biogenesis. During assembly of the H/ACA snoRNPs complex, it associates with the complex, disappearing during maturation of the complex being replaced by GAR1 to yield mature H/ACA snoRNPs complex. Naf1 reveals a striking structural homology with the core domain of archaeal Gar1 [].; GO: 0030515 snoRNA binding, 0031120 snRNA pseudouridine synthesis, 0042254 ribosome biogenesis; PDB: 2EY4_C 3MQK_C 2RFK_C 2HVY_B 3HAY_B 3U28_C 3UAI_C 2EQN_A 2V3M_F.
Probab=100.00 E-value=2.1e-38 Score=297.71 Aligned_cols=148 Identities=40% Similarity=0.620 Sum_probs=83.6
Q ss_pred cCcCCCCCCCceecCCCCceeecceeeeeecceEEEeccCCCCCCCCCCeEEEccCCeeeEEeeeeecCCCCcEEEEEcC
Q 005475 284 LQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYN 363 (695)
Q Consensus 284 l~elPPvppldisI~pd~~I~pIGtIsSIVdn~VIVkS~~e~~VLDeGSVLCLtEDRtvIGkV~EVFGPVk~PyYsVRFn 363 (695)
..++++....++.+.++++|++||+|+|||++.|||++....+||++||+||+ +||++||+|+||||||++|||+|||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~i~~lG~v~~i~~~~vVvk~~~~~~vl~~~s~v~~-edr~~iG~V~eiFGpV~~P~y~Vr~~ 82 (154)
T PF04410_consen 4 GDGLPPVEPPDVEIGPPEEIKPLGTVSHIVENLVVVKSTPSKQVLDFGSVVCL-EDRTKIGKVDEIFGPVNNPYYSVRFN 82 (154)
T ss_dssp ----SS---TT-B--TTSSEEEEEEEEEEETTEEEEEE-SS-CEEBTT-EEEE-TTSBEEEEEEEEESESSS-EEEEE-S
T ss_pred cccCCCCCCCCcccCCCceEEEeeeEEEEeCCcEEEEeCCCCcCCCCCCEEEC-CCCCEeEEEeeEeCCCCceEEEEEeC
Confidence 44678888889999999999999999999999999999987799999999996 99999999999999999999999999
Q ss_pred CCCCcc-cccccCcEEEeccCccceeeccccccccccccCCCCCCCCC-CCc-CCCchHHHHHHHHHHHhhh
Q 005475 364 SENEIP-AEIRVGTSISFVQDFANHVLDDKNLYKKGYDASGENDEELS-DEA-EFSDDEKEAEYKRRQKMEK 432 (695)
Q Consensus 364 S~eEI~-~~LkvGtkVYYVpe~S~fV~t~~L~~~KGSDASN~~DEEvp-dE~-EFSDDEkEae~Kr~~K~kK 432 (695)
..+.+. ..+++|++|||++.+++||++.++.+.|||||||.||+|++ +++ ||||||+|++||+++|++|
T Consensus 83 ~~~~~~~~~~~~g~~vy~~~~~~~~~~~~~~~~~kg~das~~~d~e~~~~~~~efsdde~e~~~k~~~k~~~ 154 (154)
T PF04410_consen 83 SSEGIKAKSLKVGDKVYYDPDPTSRFLPEPLKRKKGSDASNKHDEEGPEGERGEFSDDEEEREYKRGRKNKK 154 (154)
T ss_dssp CHHHHHHHCCCTTSEEEEECC-GGGG----------------------------------------------
T ss_pred CccccccccccccceEEECCCchheeccccccccCCCCcccCCCCCCCCCCCCCcCCCccccccccCCCCCC
Confidence 877776 47999999999999999999999999999999999999998 566 9999999999999988764
No 3
>PRK13149 H/ACA RNA-protein complex component Gar1; Reviewed
Probab=99.42 E-value=6e-13 Score=113.11 Aligned_cols=71 Identities=27% Similarity=0.490 Sum_probs=62.1
Q ss_pred eeecceeeeee-cceEEEeccCCCCCCCCCCeEEEccCCeeeEEeeeeecCCCCcEEEEEcCCCCCcccccccCcEEEe
Q 005475 303 MLPVGVVLSVR-GVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISF 380 (695)
Q Consensus 303 I~pIGtIsSIV-dn~VIVkS~~e~~VLDeGSVLCLtEDRtvIGkV~EVFGPVk~PyYsVRFnS~eEI~~~LkvGtkVYY 380 (695)
|+++|+|+|++ ++.+|+++ ..++.+|+.|| +++++.||+|+||||||++||++|++.+... +. .+|++||+
T Consensus 1 Mk~~G~~~h~~~~g~lI~~~---~~~P~~n~~V~-~~~~~~IGkV~dIfGPV~~pY~~Vk~~~~~~--~~-~~g~k~yi 72 (73)
T PRK13149 1 MKRLGKVLHYAPKGKLIIRL---DKQPPIGSVVY-DKKLKKIGKVVDVFGPVKEPYVLVKPDKKDP--PE-LVGEKLYV 72 (73)
T ss_pred CcEeEEEEEEcCCCCEEEEc---CCCCCCCCEeE-CCCCCEeEEEEEEECCCCCcEEEEEeCCCCC--cc-ccCCEEEe
Confidence 56899999999 78999998 36888999998 5999999999999999999999999986432 23 79999996
No 4
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=3.9e-10 Score=111.35 Aligned_cols=78 Identities=15% Similarity=0.379 Sum_probs=68.7
Q ss_pred ceeecceeeeeecceEEEeccCCCCCCCCCCeEEEccCCeeeEEeeeeecCCCCcEEEEEcCCCCCcc-cccccCcEEEe
Q 005475 302 QMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIP-AEIRVGTSISF 380 (695)
Q Consensus 302 ~I~pIGtIsSIVdn~VIVkS~~e~~VLDeGSVLCLtEDRtvIGkV~EVFGPVk~PyYsVRFnS~eEI~-~~LkvGtkVYY 380 (695)
++++||+++|.|+..+|++.+. ..++.+++.||| |+++.||+|+|||||++.-+++|++.. .|. ...++|+++|+
T Consensus 52 evvelg~flh~Cegd~Vck~~~-~kIPyfNAPIyl-enk~qIGKVDEIfG~i~d~~fsIK~~d--gv~assfk~g~k~fi 127 (215)
T KOG3262|consen 52 EVVELGKFLHMCEGDLVCKLTN-KKIPYFNAPIYL-ENKEQIGKVDEIFGPINDVHFSIKPSD--GVQASSFKPGDKLFI 127 (215)
T ss_pred hhhhhhhhhhhcCCceEEeecc-ccCCCCCCceee-cchhhhcchhhhcccccccEEEEecCC--CceeecccCCCeEEe
Confidence 3447999999999999999765 478999999997 999999999999999999999999874 444 46899999999
Q ss_pred ccC
Q 005475 381 VQD 383 (695)
Q Consensus 381 Vpe 383 (695)
.|.
T Consensus 128 ~p~ 130 (215)
T KOG3262|consen 128 DPD 130 (215)
T ss_pred ccc
Confidence 886
No 5
>COG3277 GAR1 RNA-binding protein involved in rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.5e-09 Score=96.48 Aligned_cols=77 Identities=27% Similarity=0.443 Sum_probs=61.8
Q ss_pred eeecceeeeeecc-eEEEeccCCCCCCCCCCeEEEccCCeeeEEeeeeecCCCCcEEEEEcCCCCCcccccccCcEEEec
Q 005475 303 MLPVGVVLSVRGV-QVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFV 381 (695)
Q Consensus 303 I~pIGtIsSIVdn-~VIVkS~~e~~VLDeGSVLCLtEDRtvIGkV~EVFGPVk~PyYsVRFnS~eEI~~~LkvGtkVYYV 381 (695)
+.++|.|+|++.. .||+.++ ..++.+++.|+ +++.+.||+|.||||||++||.+|+..+.-. .....+|+++|+-
T Consensus 1 m~~lG~vlh~~~~g~vi~~~~--~~iP~l~~~V~-~~~~k~IG~V~dVfGPv~~PY~~Vkp~~~~~-~~~~~vg~~lYi~ 76 (98)
T COG3277 1 MKRLGKVLHVCGTGMVIVRDN--DRIPPLNAPVY-DANLKRIGKVVDVFGPVDEPYILVKPDDRDV-KLESLVGDTLYIP 76 (98)
T ss_pred CccceeEEEecCCceEEEeCC--CCCCCCCCeeE-ecCCCEEEEEEEEEccCCCCEEEEecccccc-ccccccceEEEec
Confidence 3579999999997 4555554 35788999997 5899999999999999999999999865322 2356799999987
Q ss_pred cC
Q 005475 382 QD 383 (695)
Q Consensus 382 pe 383 (695)
++
T Consensus 77 ~~ 78 (98)
T COG3277 77 PD 78 (98)
T ss_pred cc
Confidence 65
No 6
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.011 Score=65.89 Aligned_cols=15 Identities=27% Similarity=0.173 Sum_probs=8.0
Q ss_pred CcchhhhhccCeeEe
Q 005475 114 NLSCCIEEDMGKVSL 128 (695)
Q Consensus 114 ~l~~~ie~~~g~vsl 128 (695)
.|.|.|+..-+.+++
T Consensus 72 ~l~~~i~~~~e~~~~ 86 (483)
T KOG2236|consen 72 PLAAKIEMKAEDGSV 86 (483)
T ss_pred cchhhhccccccCcc
Confidence 455666655554444
No 7
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=95.53 E-value=0.007 Score=71.94 Aligned_cols=9 Identities=44% Similarity=0.619 Sum_probs=5.5
Q ss_pred cccccCCCC
Q 005475 397 KGYDASGEN 405 (695)
Q Consensus 397 KGSDASN~~ 405 (695)
.|+|-++.|
T Consensus 514 ~gv~~~ge~ 522 (1024)
T KOG1999|consen 514 LGVEKSGEY 522 (1024)
T ss_pred ecccccccc
Confidence 566666644
No 8
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=92.10 E-value=0.17 Score=59.39 Aligned_cols=9 Identities=22% Similarity=0.586 Sum_probs=4.1
Q ss_pred hhhHhhhcc
Q 005475 249 EEDEVEMIS 257 (695)
Q Consensus 249 eed~~~m~~ 257 (695)
+-|.+.|-+
T Consensus 728 ~mdDe~m~~ 736 (784)
T PF04931_consen 728 DMDDEQMMA 736 (784)
T ss_pred ccCHHHHHH
Confidence 334444544
No 9
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=92.05 E-value=0.48 Score=59.22 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=16.1
Q ss_pred cccc--cCCCCCCCCCCCCcccccCCCCC
Q 005475 613 LNQT--IGQGLPQQPACPSVNASQGILPP 639 (695)
Q Consensus 613 ~Nq~--~~~g~~~~~~~~~~~~~q~~~ps 639 (695)
+||. .+-+.+.+|.||....+++|+-+
T Consensus 2039 ~~q~m~~~~q~~s~q~~~~~s~~~~~~~~ 2067 (2220)
T KOG3598|consen 2039 MNQNMGGMNQSMSHQAPPPYSSTNEMNRP 2067 (2220)
T ss_pred cccchhhhhccccCCCCCCcccccccchh
Confidence 4566 34466777777766666666533
No 10
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=90.24 E-value=39 Score=38.73 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=14.6
Q ss_pred HHHHHhhhcCCCCCCCCCCCCCccccCCCCCCCC
Q 005475 425 KRRQKMEKRGMDDQKPGNRKNNRKKVKNKDGMWR 458 (695)
Q Consensus 425 Kr~~K~kKRg~~~q~~g~kkn~Rkk~~nr~~g~~ 458 (695)
|+++|+|++..++.++++||- +|..+|..-|+
T Consensus 174 kekrk~k~~~~Dg~~r~~k~~--Rk~~~rr~ew~ 205 (518)
T KOG1830|consen 174 KEKRKQKQKRNDGPKRPNKKP--RKPHNRREEWR 205 (518)
T ss_pred hhhhhhhcccccCCCCccccc--cCCCCccHHHH
Confidence 344444444555555554441 33344444465
No 11
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.77 E-value=4.3 Score=49.25 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=22.6
Q ss_pred CcccccccccccCCCCCcCCCccCCCCCCCCCCCCccccC
Q 005475 642 LHVKQNNLQQAAVLPGSIEAPQQFNMGASSSRGRKPYHRG 681 (695)
Q Consensus 642 ~~~~q~~~q~~~~~~g~~~~~~qf~~~~~~~~gr~~~~~~ 681 (695)
.+-++++.+++ ++| .+.+++|-+++..++-++|.+..
T Consensus 135 ~~~~pls~~~~--~~~-~pq~s~f~p~~~~~~p~~p~~~~ 171 (1007)
T KOG1984|consen 135 GPAGPLSQGPP--TGG-FPQPSAFPPGPQGGGPPGPAMVP 171 (1007)
T ss_pred CCCCccccCCC--CCC-CCCCccCCCCccCCCCCCCccCC
Confidence 33344444443 444 66778888888776666666655
No 12
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=88.66 E-value=22 Score=43.08 Aligned_cols=36 Identities=36% Similarity=0.464 Sum_probs=24.2
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 005475 534 IPPQQPQGTFFPNVFPTNGLPWPSQNYQQPPYQPMMNC 571 (695)
Q Consensus 534 ~~~~q~q~~~~p~~fp~n~m~w~~qn~~~~p~q~p~~~ 571 (695)
.++|+|...|||.+|++ =|..-|--+.+..|.|||-
T Consensus 653 ~pp~~pppp~~p~~~~~--Pp~~~~~~~~p~~~~p~Pp 688 (894)
T KOG0132|consen 653 IPPQTPPPPMFPQGFNA--PPLGFQGGAAPMSQRPMPP 688 (894)
T ss_pred CCCCCCCCCCCccCCCC--CCCcccccCCCcccCCCCC
Confidence 67788888899999987 3344444455566666654
No 13
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [].
Probab=87.93 E-value=0.36 Score=51.11 Aligned_cols=11 Identities=18% Similarity=-0.021 Sum_probs=5.9
Q ss_pred hhHhhhccccc
Q 005475 250 EDEVEMISVVD 260 (695)
Q Consensus 250 ed~~~m~~~~d 260 (695)
+.++...+|-.
T Consensus 112 dpE~EyeaWKl 122 (276)
T PF06991_consen 112 DPEAEYEAWKL 122 (276)
T ss_pred ChHHHHHHHHH
Confidence 44455556654
No 14
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.19 E-value=39 Score=41.64 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCCCCcccCCCCCC
Q 005475 473 PLPNQNQHPVSHVPASLDQGNCS 495 (695)
Q Consensus 473 ~~p~~~~~~~~~~~~~~~~~~~~ 495 (695)
..|.++-+...+.++.+.|++.-
T Consensus 15 g~~~~~~g~~~~~a~~~~~~~~~ 37 (1007)
T KOG1984|consen 15 GPPNFYGGSSNSLAQAMPNGSIN 37 (1007)
T ss_pred CCCCcCCCCCchhhhhccCCccC
Confidence 34455555555666666665554
No 15
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=83.57 E-value=0.66 Score=56.10 Aligned_cols=8 Identities=13% Similarity=0.181 Sum_probs=4.0
Q ss_pred ceEEEecc
Q 005475 315 VQVIVEGA 322 (695)
Q Consensus 315 n~VIVkS~ 322 (695)
+.|-|+|.
T Consensus 211 GyIYIEA~ 218 (1024)
T KOG1999|consen 211 GYIYIEAD 218 (1024)
T ss_pred eeEEEEec
Confidence 35555554
No 16
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=76.35 E-value=1.1e+02 Score=34.74 Aligned_cols=28 Identities=39% Similarity=0.627 Sum_probs=14.5
Q ss_pred cCCCCCCCCCCC----CCCCCCCCCCCCCCCCc
Q 005475 542 TFFPNVFPTNGL----PWPSQNYQQPPYQPMMN 570 (695)
Q Consensus 542 ~~~p~~fp~n~m----~w~~qn~~~~p~q~p~~ 570 (695)
++.|+--|.-.| |.++|-+||+| |+||+
T Consensus 257 pmpp~PpP~~t~~G~pP~pp~~~qq~p-~pp~~ 288 (498)
T KOG4849|consen 257 PMPPAPPPQQTMLGNPPLPPQQIQQQP-QPPMG 288 (498)
T ss_pred CCCCCCCCccccCCCCCCCchhhccCC-CCCCC
Confidence 444444444433 55666666666 55544
No 17
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=75.76 E-value=1.4 Score=48.34 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=9.8
Q ss_pred CCCCCccccCCCC
Q 005475 26 KDPLYNFDSKNSD 38 (695)
Q Consensus 26 ~~~~~~~~~~~~~ 38 (695)
.+|||=||.||-.
T Consensus 135 dsPLYiFDssFgE 147 (407)
T KOG2130|consen 135 DSPLYIFDSSFGE 147 (407)
T ss_pred CCCeEEecchhhc
Confidence 5789999887653
No 18
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=75.71 E-value=1.8 Score=51.80 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 005475 457 WRNGRPSAPQMDGVGQPLPNQNQHPVSHVPAS 488 (695)
Q Consensus 457 ~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~ 488 (695)
|.+-.-+. .++-....+|.-.+.|.-..|++
T Consensus 537 ~P~l~~Lv-llklv~~lFPTSD~~HpVVTPal 567 (840)
T PF04147_consen 537 WPSLSDLV-LLKLVGTLFPTSDFRHPVVTPAL 567 (840)
T ss_pred CCChhHHH-HHHHHHHhcCcccccCcchhHHH
Confidence 76666441 12333344555555555555544
No 19
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=74.28 E-value=29 Score=41.96 Aligned_cols=25 Identities=4% Similarity=-0.202 Sum_probs=11.8
Q ss_pred CCeeeEEeeeeecCCCCcEEEEEcC
Q 005475 339 SRVPLGLIDEIFGPVKNPYYVVRYN 363 (695)
Q Consensus 339 DRtvIGkV~EVFGPVk~PyYsVRFn 363 (695)
.++.+-...++|=....++-++-.+
T Consensus 415 ~~~~~aaes~s~~~~~~~pvt~~r~ 439 (756)
T KOG2375|consen 415 LGKKPAAESDSGKAEEESPVTVQRK 439 (756)
T ss_pred ccccccccccccccccCCCcccccc
Confidence 3444445555544444444444443
No 20
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=74.17 E-value=98 Score=35.70 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=7.1
Q ss_pred cCCCchHHHH
Q 005475 413 AEFSDDEKEA 422 (695)
Q Consensus 413 ~EFSDDEkEa 422 (695)
-=|=||+||+
T Consensus 138 tpYRDdgk~g 147 (518)
T KOG1830|consen 138 TPYRDDGKDG 147 (518)
T ss_pred CccccCCccc
Confidence 3677888776
No 21
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=73.85 E-value=1.5e+02 Score=36.39 Aligned_cols=7 Identities=43% Similarity=0.216 Sum_probs=3.2
Q ss_pred CCCCCCC
Q 005475 404 ENDEELS 410 (695)
Q Consensus 404 ~~DEEvp 410 (695)
.||-|+.
T Consensus 504 ~wD~~lG 510 (894)
T KOG0132|consen 504 YWDVELG 510 (894)
T ss_pred hhhcccC
Confidence 3454444
No 22
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=73.69 E-value=14 Score=44.76 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCC
Q 005475 580 QMSLPNVGLPGG 591 (695)
Q Consensus 580 ~~~~~~~~~~gg 591 (695)
++|-|.+++|||
T Consensus 568 G~PPpPppppg~ 579 (1102)
T KOG1924|consen 568 GGPPPPPPPPGG 579 (1102)
T ss_pred CCCCccCCCCCC
Confidence 555666666765
No 23
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=72.57 E-value=3.3 Score=46.88 Aligned_cols=7 Identities=29% Similarity=0.278 Sum_probs=4.1
Q ss_pred cccccCc
Q 005475 278 IRSKNEL 284 (695)
Q Consensus 278 iRTKNEl 284 (695)
-.|-||.
T Consensus 101 ~~TDnE~ 107 (458)
T PF10446_consen 101 NETDNEA 107 (458)
T ss_pred ccCcccc
Confidence 3566665
No 24
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.45 E-value=1.7e+02 Score=37.00 Aligned_cols=21 Identities=5% Similarity=-0.067 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCcCCcccccc
Q 005475 558 QNYQQPPYQPMMNCGLFLQQS 578 (695)
Q Consensus 558 qn~~~~p~q~p~~~g~~~qqq 578 (695)
.|+++++-+-|++.=++|-+.
T Consensus 800 s~~~p~~~stP~~~~~~~~P~ 820 (1049)
T KOG0307|consen 800 SNARPNSASTPTPPAFSFTPP 820 (1049)
T ss_pred CCCCCCCCCCCCCCCcCCCCC
Confidence 345555556666665666443
No 25
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=71.53 E-value=85 Score=35.50 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=17.0
Q ss_pred cCCCCCcCCCccCCCCCCCCCC---------CCccccCCCccC
Q 005475 653 AVLPGSIEAPQQFNMGASSSRG---------RKPYHRGGGRFS 686 (695)
Q Consensus 653 ~~~~g~~~~~~qf~~~~~~~~g---------r~~~~~~ggrf~ 686 (695)
+..|-++-+|-+|-+-.+.++| |.||.+++-|+.
T Consensus 308 a~pPaph~NpaffpPP~~~s~GppP~~~~~~~pPyn~~~~r~~ 350 (498)
T KOG4849|consen 308 AGPPAPHNNPAFFPPPQLGSMGPPPQMNTAMRPPYNGLPPRHV 350 (498)
T ss_pred CCCCCcccCcccCCCCCcCcCCCCCCCccCCCCCCCCCCcccC
Confidence 3334444444444444444444 556666665543
No 26
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=67.73 E-value=23 Score=43.16 Aligned_cols=11 Identities=18% Similarity=0.099 Sum_probs=5.6
Q ss_pred ccCCCCCcccc
Q 005475 24 NFKDPLYNFDS 34 (695)
Q Consensus 24 ~~~~~~~~~~~ 34 (695)
.|+..=-|||-
T Consensus 50 ~~~sk~~~~H~ 60 (1102)
T KOG1924|consen 50 DFKSKPSPAHL 60 (1102)
T ss_pred ccccCCCcccC
Confidence 45555555553
No 27
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=67.28 E-value=3 Score=49.90 Aligned_cols=12 Identities=17% Similarity=0.022 Sum_probs=6.1
Q ss_pred hhHhhhcccccc
Q 005475 250 EDEVEMISVVDV 261 (695)
Q Consensus 250 ed~~~m~~~~d~ 261 (695)
.|+++-..|.+.
T Consensus 925 sdEE~gkdwdel 936 (960)
T KOG1189|consen 925 SDEESGKDWDEL 936 (960)
T ss_pred chhhhccchhhh
Confidence 334555556554
No 28
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=63.23 E-value=2.9 Score=44.72 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=3.7
Q ss_pred CCCccccccC
Q 005475 159 DGAKSGIISD 168 (695)
Q Consensus 159 sG~~~~l~~d 168 (695)
+|.-|.+.+.
T Consensus 172 ~G~Ygd~yn~ 181 (303)
T KOG3064|consen 172 SGTYGDIYNF 181 (303)
T ss_pred cCCcCCcccc
Confidence 3333333333
No 29
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=61.77 E-value=7.8 Score=48.71 Aligned_cols=10 Identities=50% Similarity=0.667 Sum_probs=4.6
Q ss_pred ccCCccCccc
Q 005475 504 VGGTGLVPQL 513 (695)
Q Consensus 504 ~~~~~~~~~~ 513 (695)
-+||+.|--+
T Consensus 1624 r~GTG~Fdll 1633 (1640)
T KOG0262|consen 1624 RGGTGSFDLL 1633 (1640)
T ss_pred CCCcceeeee
Confidence 3455544433
No 30
>COG3881 PRC-barrel domain containing protein [General function prediction only]
Probab=60.58 E-value=11 Score=37.97 Aligned_cols=48 Identities=25% Similarity=0.380 Sum_probs=35.2
Q ss_pred CCceeecceeeeeecceEEEeccCCC----------CCCCCCCeEEEccCCeeeEEeeee
Q 005475 300 HHQMLPVGVVLSVRGVQVIVEGAEKH----------NPLNEGSILWITESRVPLGLIDEI 349 (695)
Q Consensus 300 d~~I~pIGtIsSIVdn~VIVkS~~e~----------~VLDeGSVLCLtEDRtvIGkV~EV 349 (695)
.+.+.|++.|.||.+..|++....+. ..++-..+| +.++++||.|-||
T Consensus 49 ~h~~lp~~~i~Sig~k~Imi~vp~~~~~~~~ns~~ye~m~mk~~l--t~dG~iLGmveDV 106 (176)
T COG3881 49 KHCCLPVKNIVSIGSKMIMIYVPYKGSFIRFNSFTYEIMNMKVIL--TYDGTILGMVEDV 106 (176)
T ss_pred eeeeeeecceeeeccceEEEeccccceecccCchhhHhhcCceEe--ccCCcEeeeeeEE
Confidence 47899999999999998888764321 123333333 6899999999887
No 31
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=57.46 E-value=11 Score=39.44 Aligned_cols=10 Identities=10% Similarity=0.328 Sum_probs=5.8
Q ss_pred ceEEEeccCC
Q 005475 315 VQVIVEGAEK 324 (695)
Q Consensus 315 n~VIVkS~~e 324 (695)
.+=+|+|+++
T Consensus 182 RtRLIkGdGE 191 (225)
T PF10500_consen 182 RTRLIKGDGE 191 (225)
T ss_pred ceeeecccch
Confidence 4556677653
No 32
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.64 E-value=1.1e+02 Score=36.60 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=12.8
Q ss_pred ccccCCccCccchhhhcccCccCCCCcccc
Q 005475 502 GFVGGTGLVPQLQQMVQNTSFSTSPSAVWT 531 (695)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 531 (695)
.+|.|+.-.++++ + -...|+|.
T Consensus 90 srt~gs~a~g~~~-----~---k~~~~~ws 111 (728)
T KOG4592|consen 90 SRTTGSEAGGSNR-----I---KLDSGVWS 111 (728)
T ss_pred cccccccccCCCC-----c---cccccccc
Confidence 4566666666554 1 23567887
No 33
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=52.12 E-value=2.6e+02 Score=33.69 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q 005475 545 PNVFPTNGLPWPSQNYQQPPYQPM 568 (695)
Q Consensus 545 p~~fp~n~m~w~~qn~~~~p~q~p 568 (695)
|..||.--+||-.+ .+|+|+.
T Consensus 375 p~~~~~~q~p~~g~---epp~~~q 395 (757)
T KOG4368|consen 375 PWNSQHEQPPWGGG---EPPFRMQ 395 (757)
T ss_pred ccccccccCcccCC---CCchhhc
Confidence 47788888888766 5666765
No 34
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=51.74 E-value=16 Score=44.17 Aligned_cols=7 Identities=57% Similarity=0.923 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 005475 325 HNPLNEG 331 (695)
Q Consensus 325 ~~VLDeG 331 (695)
++-|..+
T Consensus 455 hpsLa~~ 461 (840)
T PF04147_consen 455 HPSLAEG 461 (840)
T ss_pred CCCCCcc
Confidence 3444443
No 35
>KOG3600 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP240 [Transcription]
Probab=51.60 E-value=1.5e+02 Score=38.47 Aligned_cols=43 Identities=28% Similarity=0.251 Sum_probs=21.4
Q ss_pred ccccccccccccCCCCCC-----CCC-CCcCCC-----chHHHHHHHHHHHhhh
Q 005475 390 DDKNLYKKGYDASGENDE-----ELS-DEAEFS-----DDEKEAEYKRRQKMEK 432 (695)
Q Consensus 390 t~~L~~~KGSDASN~~DE-----Evp-dE~EFS-----DDEkEae~Kr~~K~kK 432 (695)
+...+.+--.||-..+-- |.. ++.-|- =-|.||..-+++|+.+
T Consensus 706 ~p~~ls~~~gDa~qe~~~dpytfedgde~~~fp~~kk~~q~~E~d~~kk~k~ed 759 (2238)
T KOG3600|consen 706 TPPSLSMLLGDAAQEHSPDPYTFEDGDERIAFPGGKKSLQEIEADDIKKKKMED 759 (2238)
T ss_pred CCcchhhhcchhhcCCCCCCcccccCceEEeccCCcchhhhhhhhhhhhhcccc
Confidence 334445555677655431 111 123443 2356777666666654
No 36
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=51.56 E-value=7.1 Score=49.10 Aligned_cols=10 Identities=10% Similarity=0.086 Sum_probs=4.2
Q ss_pred CccccccCCc
Q 005475 161 AKSGIISDEK 170 (695)
Q Consensus 161 ~~~~l~~d~d 170 (695)
|..+--.|.|
T Consensus 1650 vrrtsrrdsD 1659 (3015)
T KOG0943|consen 1650 VRRTSRRDSD 1659 (3015)
T ss_pred hccccccccc
Confidence 3344444444
No 37
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=50.27 E-value=5.8 Score=51.22 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=19.7
Q ss_pred CCccccc----ccccccCCCCCcCCCccCCCCCCCCCC
Q 005475 641 GLHVKQN----NLQQAAVLPGSIEAPQQFNMGASSSRG 674 (695)
Q Consensus 641 ~~~~~q~----~~q~~~~~~g~~~~~~qf~~~~~~~~g 674 (695)
+..+-|+ .||-|+-+ -+..|--|+-|-+-.++
T Consensus 764 ~~~s~~d~~~l~fqvP~YI--~~~~p~yf~~gCnNtkd 799 (2849)
T PTZ00415 764 EEGSDEDLFSLQFQIPPYI--DIKEPFYFLFGCNNNKD 799 (2849)
T ss_pred ccCCCCCeEEEEEecCceE--ecCCceEEEEecccCCC
Confidence 3444555 56655554 24578888888776664
No 38
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.11 E-value=1.6e+02 Score=36.48 Aligned_cols=17 Identities=29% Similarity=0.184 Sum_probs=8.8
Q ss_pred CCCCCcCCcccccccCCCC
Q 005475 565 YQPMMNCGLFLQQSSQMSL 583 (695)
Q Consensus 565 ~q~p~~~g~~~qqq~~~~~ 583 (695)
||..+. +-|+||+ |++.
T Consensus 89 y~~~~~-p~p~~~~-q~~~ 105 (887)
T KOG1985|consen 89 YQQLQA-PTPAQQQ-QQPP 105 (887)
T ss_pred hhhccC-CCCcccC-CCCC
Confidence 444443 3677766 4433
No 39
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=46.84 E-value=4e+02 Score=31.54 Aligned_cols=48 Identities=27% Similarity=0.457 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCCccCCCCCCCCcccccccCccccccCCCCCCCCCCCCcccccCCC
Q 005475 582 SLPNVGLPGGPSNFFAGPTYAPWQGLLGQNGLNQTIGQGLPQQPACPSVNASQGIL 637 (695)
Q Consensus 582 ~~~~~~~~gg~~n~f~~~~~~pw~~~~gq~~~Nq~~~~g~~~~~~~~~~~~~q~~~ 637 (695)
++..++.|||..-+...=.|+| -||. =|-+| +.-.|++|..++++..+
T Consensus 426 ~~~sa~vp~g~~P~~Pp~~~~~----p~~~--~~ppg--~p~pP~~p~Pg~~s~~~ 473 (554)
T KOG0119|consen 426 SVHSAPVPGGLAPAYPPTSYAP----PPQS--GQPPG--IPLPPHPPPPGMQSAQS 473 (554)
T ss_pred ccccCCCCcccCCCCCCccCCC----CCcc--CCCCC--CCCCCCCCCCCcccccc
Confidence 3456777777332222222332 2332 12244 55666666777775555
No 40
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=46.59 E-value=77 Score=36.00 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=50.3
Q ss_pred eecCCCCceeecceeeeeecceEEEeccCCCCCCCCCCeEEEccCCeeeEEeeeeecCCCCcEEEEEcCCCCCccccccc
Q 005475 295 VVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRV 374 (695)
Q Consensus 295 isI~pd~~I~pIGtIsSIVdn~VIVkS~~e~~VLDeGSVLCLtEDRtvIGkV~EVFGPVk~PyYsVRFnS~eEI~~~Lkv 374 (695)
...+|...+...|+|.+|.+.+|.+.+. -...|.++++..++ .+| ||.|=...-.+.+-|... .+|.+
T Consensus 11 ~~~~~~~~~~~~G~v~~v~g~~~~~~~~----~~~~ge~~~i~~~~-~~~---eVv~~~~~~~~l~~~~~~----~gi~~ 78 (433)
T PRK07594 11 LKYPPPDGYCRWGRIQDVSATLLNAWLP----GVFMGELCCIKPGE-ELA---EVVGINGSKALLSPFTST----IGLHC 78 (433)
T ss_pred cCCCCCCccceeeEEEEEECCEEEEEEC----CcCCCCEEEEecCC-eEE---EEEEEcCCeEEEEEccCC----cCCCC
Confidence 3445556667899999999998888743 35567777763333 445 666556666666666543 35778
Q ss_pred CcEEEec
Q 005475 375 GTSISFV 381 (695)
Q Consensus 375 GtkVYYV 381 (695)
|+.|+.-
T Consensus 79 g~~V~~t 85 (433)
T PRK07594 79 GQQVMAL 85 (433)
T ss_pred CCEEEeC
Confidence 9999873
No 41
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=45.74 E-value=1.2e+02 Score=36.14 Aligned_cols=15 Identities=20% Similarity=0.281 Sum_probs=8.3
Q ss_pred CCcEEEEEcCCCCCc
Q 005475 354 KNPYYVVRYNSENEI 368 (695)
Q Consensus 354 k~PyYsVRFnS~eEI 368 (695)
.-|.||+.|.+.++.
T Consensus 190 v~~~yc~~~~~~~e~ 204 (757)
T KOG4368|consen 190 VVPIYCTSFLAVEED 204 (757)
T ss_pred hHHHHHhhhhhhHhH
Confidence 356666666554443
No 42
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.64 E-value=2.5e+02 Score=34.86 Aligned_cols=10 Identities=60% Similarity=0.776 Sum_probs=4.9
Q ss_pred CCCCCccccc
Q 005475 625 PACPSVNASQ 634 (695)
Q Consensus 625 ~~~~~~~~~q 634 (695)
++++.+|+.|
T Consensus 120 ~~~~~~~~~~ 129 (887)
T KOG1985|consen 120 PAPPPMNALQ 129 (887)
T ss_pred CCCCcccccC
Confidence 4444555554
No 43
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.47 E-value=5.3e+02 Score=32.91 Aligned_cols=10 Identities=20% Similarity=0.102 Sum_probs=7.4
Q ss_pred cceeeeeecc
Q 005475 306 VGVVLSVRGV 315 (695)
Q Consensus 306 IGtIsSIVdn 315 (695)
.|.+.++|+.
T Consensus 500 tgd~~~aV~~ 509 (1049)
T KOG0307|consen 500 TGDFKSAVEL 509 (1049)
T ss_pred hccHHHHHHH
Confidence 6888888763
No 44
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=39.70 E-value=22 Score=41.56 Aligned_cols=59 Identities=25% Similarity=0.310 Sum_probs=31.7
Q ss_pred CCccccCCCCCCCCC--CcCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccCCCCCCCCCCCCCCccCCCCCC
Q 005475 526 PSAVWTDRIPPQQPQ--GTFFPNVFPTNGLPWPSQNYQQPPYQPMMNCGLFLQQSSQMSLPNVGLPGGPSNFFAGPTY 601 (695)
Q Consensus 526 ~~~~w~~~~~~~q~q--~~~~p~~fp~n~m~w~~qn~~~~p~q~p~~~g~~~qqq~~~~~~~~~~~gg~~n~f~~~~~ 601 (695)
+=-+|.=+.+-+ |- -+=+|+-||.-+--+.|....+ + -.-++||.|-+| -+=||..=+|
T Consensus 387 tLKvWDLrq~kk-pL~~~tgL~t~~~~tdc~FSPd~kli------~---------TGtS~~~~~~~g-~L~f~d~~t~ 447 (641)
T KOG0772|consen 387 TLKVWDLRQFKK-PLNVRTGLPTPFPGTDCCFSPDDKLI------L---------TGTSAPNGMTAG-TLFFFDRMTL 447 (641)
T ss_pred ceeeeecccccc-chhhhcCCCccCCCCccccCCCceEE------E---------ecccccCCCCCc-eEEEEeccce
Confidence 455777543322 11 1235666666655444332221 1 366888888888 4656665554
No 45
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=39.15 E-value=18 Score=43.17 Aligned_cols=13 Identities=62% Similarity=1.048 Sum_probs=7.8
Q ss_pred ccccC--hhhHHHhh
Q 005475 43 DSFLD--FDTIKELF 55 (695)
Q Consensus 43 d~~~d--f~~i~~~~ 55 (695)
||-+| |.+|+.+|
T Consensus 688 ds~idiLFSNikhlf 702 (1001)
T COG5406 688 DSHIDILFSNIKHLF 702 (1001)
T ss_pred CceeEEeeccchhhe
Confidence 44444 77777664
No 46
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=39.04 E-value=2e+02 Score=32.60 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=5.3
Q ss_pred hhhHHHhhhc
Q 005475 48 FDTIKELFED 57 (695)
Q Consensus 48 f~~i~~~~~~ 57 (695)
=+.|.++|..
T Consensus 14 e~~L~~~F~~ 23 (562)
T TIGR01628 14 EAKLYDLFKP 23 (562)
T ss_pred HHHHHHHHHh
Confidence 3455566644
No 47
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=38.92 E-value=23 Score=41.98 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=7.2
Q ss_pred CCCCC--CCCcCCCchH
Q 005475 405 NDEEL--SDEAEFSDDE 419 (695)
Q Consensus 405 ~DEEv--pdE~EFSDDE 419 (695)
|+|+- |+|.=|++-|
T Consensus 297 heESYNPP~EYL~~~eE 313 (733)
T KOG0650|consen 297 HEESYNPPEEYLFDEEE 313 (733)
T ss_pred cccccCCchhhccCHHH
Confidence 45543 2455555555
No 48
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=38.72 E-value=21 Score=41.75 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=9.8
Q ss_pred CCCcCCCccCCCCCCCCC
Q 005475 656 PGSIEAPQQFNMGASSSR 673 (695)
Q Consensus 656 ~g~~~~~~qf~~~~~~~~ 673 (695)
++..-+|.|.+.|+++.-
T Consensus 610 ptyfvpP~qmt~g~~~~p 627 (694)
T KOG4264|consen 610 PTYFVPPPQMTRGSTHGP 627 (694)
T ss_pred cccccCccccccCCCCCC
Confidence 334445666666665544
No 49
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=36.71 E-value=9.4 Score=49.50 Aligned_cols=15 Identities=33% Similarity=0.476 Sum_probs=9.6
Q ss_pred eecCCCCcEEEEEcC
Q 005475 349 IFGPVKNPYYVVRYN 363 (695)
Q Consensus 349 VFGPVk~PyYsVRFn 363 (695)
.|=|-+.||.++...
T Consensus 307 ~~~pkkapyv~l~~~ 321 (2849)
T PTZ00415 307 EFFPKKAPYVTLTKA 321 (2849)
T ss_pred eeccCCCceEEEEcc
Confidence 455777787766544
No 50
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=36.45 E-value=1e+02 Score=36.10 Aligned_cols=95 Identities=18% Similarity=0.173 Sum_probs=0.0
Q ss_pred CCcccCCCCCCCcccccccccCCccCccchhhhcccCccCCCCccccCCCCCCCCCCcCCCCCCCCCCCCCCCCC-----
Q 005475 485 VPASLDQGNCSTSSIGQGFVGGTGLVPQLQQMVQNTSFSTSPSAVWTDRIPPQQPQGTFFPNVFPTNGLPWPSQN----- 559 (695)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~q~q~~~~p~~fp~n~m~w~~qn----- 559 (695)
+.+-++-...-+.+--.+|--|.+---|.|-| -+|..-+=|+++ |-|||..++-.. +|.||--..|
T Consensus 508 a~~~~~~A~~~~M~~~m~~P~~~PSA~P~P~M---~~~~~G~~~~Y~----P~~PQ~~~~~PS--P~~~P~~Gs~Ga~~~ 578 (654)
T COG5180 508 AVPGMNPAMGMNMGGMMGFPMGGPSASPNPMM---NGFAAGSMGMYM----PFQPQPMFYHPS--PQMMPVMGSNGAEEG 578 (654)
T ss_pred cccccChhhcCCccceeeccCCCCCCCCCCCc---CCcccCCccccc----CCCCCcccccCC--CCCCcccCCCCCccc
Q ss_pred -----CCCCCCCCC-----------CcCCcccccccCCCCCCCCCCCCCCc
Q 005475 560 -----YQQPPYQPM-----------MNCGLFLQQSSQMSLPNVGLPGGPSN 594 (695)
Q Consensus 560 -----~~~~p~q~p-----------~~~g~~~qqq~~~~~~~~~~~gg~~n 594 (695)
++.+||-|+ +|-|||||-- ++..|-|.||
T Consensus 579 G~~~~~~vP~~~M~~~PG~~~GA~~~PGGi~~~~M------~G~~P~~~P~ 623 (654)
T COG5180 579 GGNISPHVPAGFMAAGPGAPMGAFGYPGGIPFQGM------MGSGPSGMPA 623 (654)
T ss_pred CCcCCCCCCccccccCCCCCCccccCCCccccccc------cCCCCCCCCC
No 51
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.78 E-value=32 Score=39.15 Aligned_cols=27 Identities=30% Similarity=0.339 Sum_probs=16.4
Q ss_pred ccccccccccccCCCCCCCCchhhHhh
Q 005475 228 GEIEDVDREEMTGGIDDDEDDEEDEVE 254 (695)
Q Consensus 228 gei~d~dGe~~~~eiDdd~~eeed~~~ 254 (695)
+--+.+++++-.+++|+|+++++|.+.
T Consensus 260 ~~n~sv~~~ss~~edD~Dddd~dDdee 286 (514)
T KOG3130|consen 260 QLNCSVNGSSSYHEDDDDDDDDDDDEE 286 (514)
T ss_pred cccccccCCCCccccccccccccchhh
Confidence 334778887777777766555444433
No 52
>KOG4101 consensus Cysteine-rich hydrophobic proteins [General function prediction only]
Probab=34.72 E-value=22 Score=35.56 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=14.3
Q ss_pred ecCCCCceeecceeeeeecceEE
Q 005475 296 VLQPHHQMLPVGVVLSVRGVQVI 318 (695)
Q Consensus 296 sI~pd~~I~pIGtIsSIVdn~VI 318 (695)
.|.|.+--..||.|-++....+-
T Consensus 68 ~vAPEEfkati~RvNsvLKk~lp 90 (175)
T KOG4101|consen 68 KVAPEEFKATIGRVNSVLKKHLP 90 (175)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCC
Confidence 34455555568888887765443
No 53
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=32.88 E-value=14 Score=44.04 Aligned_cols=9 Identities=22% Similarity=0.652 Sum_probs=0.0
Q ss_pred ccChhhHHH
Q 005475 45 FLDFDTIKE 53 (695)
Q Consensus 45 ~~df~~i~~ 53 (695)
|+||-.|..
T Consensus 295 fPD~~Dvl~ 303 (713)
T PF03344_consen 295 FPDYHDVLQ 303 (713)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 444444433
No 54
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=31.65 E-value=2.1e+02 Score=33.20 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=49.9
Q ss_pred CCCceeecceeeeeecceEEEeccCCCCCCCCCCeEEEccCCeeeEEeeeeecCCCCcEEEEEcCCCCCcccccccCcEE
Q 005475 299 PHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSI 378 (695)
Q Consensus 299 pd~~I~pIGtIsSIVdn~VIVkS~~e~~VLDeGSVLCLtEDRtvIGkV~EVFGPVk~PyYsVRFnS~eEI~~~LkvGtkV 378 (695)
....+...|+|.+|.+.+|.|.+.. -...|.++.+ +++ ++|. |++=-..-.+++-|.+.. +|..|+.|
T Consensus 20 ~~~~~~~~G~V~~v~g~ii~v~g~~---~~~~ge~~~i-~~~-~~g~---Vi~~~~~~~~~~~~~~~~----gi~~G~~V 87 (501)
T TIGR00962 20 KDIEMEEVGTVVSVGDGIARVYGLE---NVMSGELIEF-EGG-VQGI---ALNLEEDSVGAVIMGDYS----NIREGSTV 87 (501)
T ss_pred CcceeEEEEEEEEEeCCEEEEECCc---CCCCCCEEEE-CCC-eEEE---EEEecCCeEEEEEecCCc----CCCCCCee
Confidence 3455778999999999999999874 2557778877 455 5664 444455556777776543 56788888
Q ss_pred Eec
Q 005475 379 SFV 381 (695)
Q Consensus 379 YYV 381 (695)
+.-
T Consensus 88 ~~t 90 (501)
T TIGR00962 88 KRT 90 (501)
T ss_pred Eec
Confidence 763
No 55
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=31.56 E-value=28 Score=37.56 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=8.8
Q ss_pred CCCCCCCCCcchhhHHHHHHH
Q 005475 189 SSSSSSDNDEEEDEDEELKKE 209 (695)
Q Consensus 189 sSssssd~d~d~~ede~~~ee 209 (695)
.+.|+++++.|+|++|+.|.+
T Consensus 245 ~~d~d~e~esd~de~Ee~K~~ 265 (303)
T KOG3064|consen 245 DEDSDSEDESDSDEIEENKKE 265 (303)
T ss_pred ccccccccCCchhhHHHhhhh
Confidence 333344444444444443333
No 56
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=30.02 E-value=28 Score=41.26 Aligned_cols=10 Identities=30% Similarity=0.388 Sum_probs=6.7
Q ss_pred CCchHHHHHH
Q 005475 415 FSDDEKEAEY 424 (695)
Q Consensus 415 FSDDEkEae~ 424 (695)
=|-||.-|+|
T Consensus 617 qsadevkraf 626 (1103)
T KOG1420|consen 617 QSADEVKRAF 626 (1103)
T ss_pred cchHHHHHHH
Confidence 3677777765
No 57
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=29.70 E-value=27 Score=39.55 Aligned_cols=10 Identities=30% Similarity=0.195 Sum_probs=4.1
Q ss_pred chhhHhhhcc
Q 005475 248 DEEDEVEMIS 257 (695)
Q Consensus 248 eeed~~~m~~ 257 (695)
||.++.-|+.
T Consensus 306 EE~~e~~map 315 (542)
T KOG0699|consen 306 EEMVEGSMAP 315 (542)
T ss_pred hhhhhhcccc
Confidence 3333444444
No 58
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=29.21 E-value=28 Score=40.96 Aligned_cols=9 Identities=33% Similarity=0.368 Sum_probs=3.8
Q ss_pred hhccCeeEe
Q 005475 120 EEDMGKVSL 128 (695)
Q Consensus 120 e~~~g~vsl 128 (695)
-+.||-++|
T Consensus 590 ve~lGl~~L 598 (739)
T KOG2140|consen 590 VEALGLDKL 598 (739)
T ss_pred HHHhChHHH
Confidence 344444333
No 59
>KOG2428 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.16 E-value=60 Score=37.17 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=10.7
Q ss_pred HhccCcCCcccccccccccc
Q 005475 216 ERGLGELGELEEGEIEDVDR 235 (695)
Q Consensus 216 ~~~~~~~ge~EEgei~d~dG 235 (695)
+-.++++|+.|+++-.+..+
T Consensus 408 ~~~~~~~~~ees~~~~~~s~ 427 (443)
T KOG2428|consen 408 KLPADGEGREESDEGKDESE 427 (443)
T ss_pred cccccccccCcccccccccc
Confidence 33445556666666554443
No 60
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=28.90 E-value=1.4e+02 Score=32.18 Aligned_cols=45 Identities=27% Similarity=0.217 Sum_probs=29.2
Q ss_pred CCCCCCCCCcCCCCCCCCCCCCCCC-----------CCCCCCCCCCCCcCCcccccc
Q 005475 533 RIPPQQPQGTFFPNVFPTNGLPWPS-----------QNYQQPPYQPMMNCGLFLQQS 578 (695)
Q Consensus 533 ~~~~~q~q~~~~p~~fp~n~m~w~~-----------qn~~~~p~q~p~~~g~~~qqq 578 (695)
.++.+|.-.+-+|-++..|.-+|.. .++++.| +..++++.+++.+
T Consensus 60 ~~~~qq~~s~~~~~~~~~n~~~~s~~~~~~~~~~~~~~~~q~P-~~~~~q~~~~~~~ 115 (258)
T KOG1142|consen 60 ENPNQQWISTGYPQPQVSNGGPPSQALNQQDSQQSAISQQQQP-ASSPSQGSSMSNQ 115 (258)
T ss_pred CCCCccccccccCccccccCCchHHhhhhhhHHhhccccCCCC-ccCCCCCCCcccc
Confidence 5777777777888888888777762 2234555 4455666666554
No 61
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=28.88 E-value=19 Score=43.17 Aligned_cols=10 Identities=10% Similarity=0.212 Sum_probs=0.0
Q ss_pred CCCccccCCC
Q 005475 28 PLYNFDSKNS 37 (695)
Q Consensus 28 ~~~~~~~~~~ 37 (695)
-|+-|.+...
T Consensus 205 ~l~~~~~~I~ 214 (713)
T PF03344_consen 205 LLKKYNKEIK 214 (713)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3555555433
No 62
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=28.77 E-value=46 Score=39.07 Aligned_cols=8 Identities=13% Similarity=0.268 Sum_probs=3.5
Q ss_pred CcEEEEEc
Q 005475 355 NPYYVVRY 362 (695)
Q Consensus 355 ~PyYsVRF 362 (695)
-=.|.+-+
T Consensus 254 GDQYI~Dm 261 (641)
T KOG0772|consen 254 GDQYIRDM 261 (641)
T ss_pred cchhhhhh
Confidence 33444444
No 63
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=28.63 E-value=26 Score=40.61 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=13.5
Q ss_pred CCCCCCcchhhhhccCeeEee
Q 005475 109 GGKEKNLSCCIEEDMGKVSLV 129 (695)
Q Consensus 109 ~~~~g~l~~~ie~~~g~vslv 129 (695)
.|.-+|++...++...|-++.
T Consensus 122 pgva~n~s~~l~ek~~k~n~s 142 (620)
T COG4547 122 PGVAKNLSAMLEEKYDKANFS 142 (620)
T ss_pred Cccccchhhhhhhhccccccc
Confidence 344567777777777766665
No 64
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=28.06 E-value=32 Score=42.95 Aligned_cols=10 Identities=10% Similarity=-0.097 Sum_probs=4.8
Q ss_pred EeccCcccee
Q 005475 379 SFVQDFANHV 388 (695)
Q Consensus 379 YYVpe~S~fV 388 (695)
.-+|.+++.|
T Consensus 1047 ~~iPsds~Lv 1056 (1128)
T KOG2051|consen 1047 LNIPSDSQLV 1056 (1128)
T ss_pred eecCchhHHH
Confidence 3355555444
No 65
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=27.72 E-value=20 Score=41.83 Aligned_cols=8 Identities=25% Similarity=0.738 Sum_probs=1.9
Q ss_pred CCCCCCCC
Q 005475 552 GLPWPSQN 559 (695)
Q Consensus 552 ~m~w~~qn 559 (695)
+++|....
T Consensus 458 tlSWk~~~ 465 (556)
T PF05918_consen 458 TLSWKEAK 465 (556)
T ss_dssp --TTS---
T ss_pred ceeeeecc
Confidence 45665443
No 66
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=27.55 E-value=11 Score=36.76 Aligned_cols=58 Identities=28% Similarity=0.479 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCCCccccccCCccccccccccccccCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 005475 147 LVGNMGSFPADKDGAKSGIISDEKESESESESENESSASSSSSSSSSSDNDEEEDEDEELKKEEAKKEVE 216 (695)
Q Consensus 147 lV~~s~s~~~dgsG~~~~l~~d~de~~~eseseses~sSssSsSssssd~d~d~~ede~~~eee~~~e~~ 216 (695)
|+.+|+.|.. +|-.---+..+++.+++++.+.+-.. +||+|++++++.+++...++.|
T Consensus 92 L~~GsGPVhi--sG~~~~~~~~d~~~~e~d~ee~~dee----------~deeddeeee~~ee~~p~K~~~ 149 (149)
T PF03066_consen 92 LKCGSGPVHI--SGQHLVAMEEDEESEEEDDEEDEDEE----------DDEEDDEEEEEEEEESPVKKSK 149 (149)
T ss_dssp EEESSS-EEE--EEEEEEE---------------------------------------------------
T ss_pred EEecCCCEEe--eCcccccccccccccccchhhhcccc----------cccccccccccccccCCCccCC
No 67
>KOG3620 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.93 E-value=74 Score=40.70 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCCccccCCCC
Q 005475 421 EAEYKRRQKMEKRGMDDQKPGNRKNNRKKVKNKD 454 (695)
Q Consensus 421 Eae~Kr~~K~kKRg~~~q~~g~kkn~Rkk~~nr~ 454 (695)
|-.+||++++||++..+-+.+|+|-.||-+++.+
T Consensus 1258 ee~erkkk~Qkkpn~~~~~~~Kqkt~rk~r~k~~ 1291 (1626)
T KOG3620|consen 1258 EERERKKKDQKKPNGTGAGVGKQKTERKQRQKLN 1291 (1626)
T ss_pred cccccChhhhcCcCCCCccccccCChHHhccccc
Confidence 3355677777888666666777777776655443
No 68
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=26.71 E-value=6.6e+02 Score=29.85 Aligned_cols=10 Identities=20% Similarity=0.667 Sum_probs=5.4
Q ss_pred ecceEEEecc
Q 005475 313 RGVQVIVEGA 322 (695)
Q Consensus 313 Vdn~VIVkS~ 322 (695)
++..|+|+|.
T Consensus 173 tgAKI~IRGk 182 (554)
T KOG0119|consen 173 TGAKIAIRGK 182 (554)
T ss_pred hCCeEEEecc
Confidence 3445666654
No 69
>PRK03760 hypothetical protein; Provisional
Probab=26.64 E-value=1.1e+02 Score=28.74 Aligned_cols=48 Identities=17% Similarity=0.392 Sum_probs=29.5
Q ss_pred eEEEccCCeeeEEeee-----eecCCCCcEEEEEcCCCCCcccccccCcEEEec
Q 005475 333 ILWITESRVPLGLIDE-----IFGPVKNPYYVVRYNSENEIPAEIRVGTSISFV 381 (695)
Q Consensus 333 VLCLtEDRtvIGkV~E-----VFGPVk~PyYsVRFnS~eEI~~~LkvGtkVYYV 381 (695)
||||+.+++++- |.+ ++.+...-.|+|-++.-.--..++++|+.|.+-
T Consensus 63 iiFld~~g~Vv~-i~~~~P~~~~~~~~~a~~VLEl~aG~~~~~gi~~Gd~v~~~ 115 (117)
T PRK03760 63 VIFLDSNRRVVD-FKTLKPWRIYVPKKPARYIIEGPVGKIRVLKVEVGDEIEWI 115 (117)
T ss_pred EEEECCCCeEEE-EEeCCCccccCCCccceEEEEeCCChHHHcCCCCCCEEEEe
Confidence 888888888776 432 344444555666666421112368999998763
No 70
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=26.57 E-value=23 Score=42.62 Aligned_cols=8 Identities=13% Similarity=-0.180 Sum_probs=4.6
Q ss_pred CCCccccc
Q 005475 275 EGPIRSKN 282 (695)
Q Consensus 275 ggPiRTKN 282 (695)
-..+.+.+
T Consensus 221 we~v~s~~ 228 (843)
T KOG1076|consen 221 WELVVSGK 228 (843)
T ss_pred eeeecccc
Confidence 35666666
No 71
>PF14179 YppG: YppG-like protein
Probab=26.47 E-value=96 Score=29.60 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCC
Q 005475 546 NVFPTNGLPWPSQN-YQQPPYQP 567 (695)
Q Consensus 546 ~~fp~n~m~w~~qn-~~~~p~q~ 567 (695)
|.|+.|+++|.+++ ++++||.-
T Consensus 1 n~yq~~~~~y~~~~~~~~~py~~ 23 (112)
T PF14179_consen 1 NMYQQNHQPYHPYQMQQQQPYYQ 23 (112)
T ss_pred CCcCcccccCCCCCCCCCCCccc
Confidence 56899999999998 77777654
No 72
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=25.80 E-value=78 Score=33.41 Aligned_cols=15 Identities=40% Similarity=0.804 Sum_probs=7.1
Q ss_pred CCCcchhhHHHHHHH
Q 005475 195 DNDEEEDEDEELKKE 209 (695)
Q Consensus 195 d~d~d~~ede~~~ee 209 (695)
|+++|+||+++.-.|
T Consensus 140 d~~ddeDd~~~Ll~E 154 (244)
T PF04889_consen 140 DDDDDEDDTAALLRE 154 (244)
T ss_pred cccccchHHHHHHHH
Confidence 344444555554444
No 73
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=25.22 E-value=3.4e+02 Score=32.61 Aligned_cols=50 Identities=26% Similarity=0.519 Sum_probs=27.5
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccCCCCCCCCCCCCCCccCCCC-CCCCccc
Q 005475 537 QQPQGTFFPNVFPTNGLPWPSQNYQQPPYQPMMNCGLFLQQSSQMSLPNVGLPGGPSNFFAGP-TYAPWQG 606 (695)
Q Consensus 537 ~q~q~~~~p~~fp~n~m~w~~qn~~~~p~q~p~~~g~~~qqq~~~~~~~~~~~gg~~n~f~~~-~~~pw~~ 606 (695)
++||..++|.--| -||.| ..-++|+.|.+ ++++||--|=|..| .|.|-+.
T Consensus 290 p~qqy~~y~~iv~---q~w~p--~~t~~fe~~~~---------------pfp~~~~~~gfn~p~~~~~~~~ 340 (684)
T KOG2591|consen 290 PHQQYSFYSVIVP---QPWSP--NPTPYFETPLA---------------PFPNGGFVNGFNSPGSYKPNAA 340 (684)
T ss_pred ccccccceeeecc---CCCCC--CcCcccccccC---------------CCCCCCcccccCCCCcCCCCcc
Confidence 5667766665444 37877 22234454444 33355557777776 6665333
No 74
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=24.92 E-value=24 Score=41.41 Aligned_cols=6 Identities=17% Similarity=0.357 Sum_probs=2.5
Q ss_pred CCcEEE
Q 005475 354 KNPYYV 359 (695)
Q Consensus 354 k~PyYs 359 (695)
+++|+.
T Consensus 354 ~Q~y~~ 359 (622)
T PF02724_consen 354 QQKYSY 359 (622)
T ss_pred cCCchh
Confidence 444443
No 75
>KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification]
Probab=24.83 E-value=35 Score=43.02 Aligned_cols=9 Identities=22% Similarity=0.043 Sum_probs=3.9
Q ss_pred cCCCCCCCc
Q 005475 489 LDQGNCSTS 497 (695)
Q Consensus 489 ~~~~~~~~~ 497 (695)
+-++-|..|
T Consensus 407 a~~yv~~~f 415 (1299)
T KOG1856|consen 407 ALQYVCAVF 415 (1299)
T ss_pred HHHHHhhhc
Confidence 334444433
No 76
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=24.46 E-value=44 Score=42.66 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=5.7
Q ss_pred hhhccCeeEeec
Q 005475 119 IEEDMGKVSLVD 130 (695)
Q Consensus 119 ie~~~g~vslv~ 130 (695)
|.+++-||.|-.
T Consensus 1225 i~~~l~rV~L~e 1236 (1640)
T KOG0262|consen 1225 ITKELRRVTLKE 1236 (1640)
T ss_pred HHHHHHHHHHHH
Confidence 444444554433
No 77
>PHA02664 hypothetical protein; Provisional
Probab=24.36 E-value=21 Score=39.67 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=6.7
Q ss_pred ccCCCCcchh
Q 005475 4 FMTEPSIEDQ 13 (695)
Q Consensus 4 f~~~~~~~~~ 13 (695)
|+|||+..+-
T Consensus 137 fvteptdsvt 146 (534)
T PHA02664 137 FVTEPTDSVT 146 (534)
T ss_pred EEecCCcceE
Confidence 6778876554
No 78
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.50 E-value=58 Score=40.53 Aligned_cols=8 Identities=13% Similarity=0.385 Sum_probs=4.0
Q ss_pred CCcccccC
Q 005475 276 GPIRSKNE 283 (695)
Q Consensus 276 gPiRTKNE 283 (695)
.||-+.++
T Consensus 953 t~LD~VD~ 960 (1010)
T KOG1991|consen 953 TPLDQVDP 960 (1010)
T ss_pred Ccccccch
Confidence 46654444
No 79
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=23.30 E-value=49 Score=42.43 Aligned_cols=12 Identities=25% Similarity=0.141 Sum_probs=6.0
Q ss_pred ccccccccCCCC
Q 005475 232 DVDREEMTGGID 243 (695)
Q Consensus 232 d~dGe~~~~eiD 243 (695)
+.+||++-+++|
T Consensus 1729 ef~GEed~~Ddd 1740 (3015)
T KOG0943|consen 1729 EFAGEEDHHDDD 1740 (3015)
T ss_pred cccCcccccccc
Confidence 344555555444
No 80
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=23.06 E-value=5.4e+02 Score=29.46 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=18.9
Q ss_pred ccccccCCCCCCCCCCCCCCccCCCCCCC
Q 005475 574 FLQQSSQMSLPNVGLPGGPSNFFAGPTYA 602 (695)
Q Consensus 574 ~~qqq~~~~~~~~~~~gg~~n~f~~~~~~ 602 (695)
+|||| |.+.+.+---||.---|-.|.|.
T Consensus 321 swqqq-q~~~~~~ggrgggkg~f~~~~~~ 348 (465)
T KOG3973|consen 321 SWQQQ-QHTFDRQGGRGGGKGTFDRPKTH 348 (465)
T ss_pred cHHHh-cCCCCCCCCcCCCCCCCcCcccc
Confidence 56666 56666666667776667777773
No 81
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=22.88 E-value=76 Score=36.50 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=7.7
Q ss_pred CCCCchhhHhhhccccc
Q 005475 244 DDEDDEEDEVEMISVVD 260 (695)
Q Consensus 244 dd~~eeed~~~m~~~~d 260 (695)
+|++|||.++-++.=+|
T Consensus 121 ~e~deee~de~~V~psD 137 (463)
T KOG0270|consen 121 DEDDEEEKDEEQVKPSD 137 (463)
T ss_pred cccchhhcccceeccCC
Confidence 33444444455554433
No 82
>KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms]
Probab=22.84 E-value=1.7e+03 Score=28.59 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=13.2
Q ss_pred chHHHHHHHHHHHhhhcCC
Q 005475 417 DDEKEAEYKRRQKMEKRGM 435 (695)
Q Consensus 417 DDEkEae~Kr~~K~kKRg~ 435 (695)
-+++|+.|-++-|.++|-+
T Consensus 710 tqkeEq~~l~kfre~r~lk 728 (1114)
T KOG3753|consen 710 TQKEEQFFLKKFRESRRLK 728 (1114)
T ss_pred hhHHHHHHHHHHHHhhhhc
Confidence 4578888887777666544
No 83
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=22.79 E-value=46 Score=35.52 Aligned_cols=6 Identities=17% Similarity=0.540 Sum_probs=2.5
Q ss_pred hhhccC
Q 005475 119 IEEDMG 124 (695)
Q Consensus 119 ie~~~g 124 (695)
||+-+|
T Consensus 157 ~EKnIe 162 (303)
T COG5129 157 FEKNIE 162 (303)
T ss_pred HHHHHH
Confidence 344444
No 84
>PF05793 TFIIF_alpha: Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); InterPro: IPR008851 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II [].; GO: 0003677 DNA binding, 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1F3U_F 1NHA_A 1I27_A 1J2X_A 2K7L_A 1ONV_A.
Probab=22.78 E-value=28 Score=40.05 Aligned_cols=8 Identities=38% Similarity=0.434 Sum_probs=0.0
Q ss_pred CCchHHHH
Q 005475 415 FSDDEKEA 422 (695)
Q Consensus 415 FSDDEkEa 422 (695)
.||-+.|.
T Consensus 362 ~sD~d~e~ 369 (527)
T PF05793_consen 362 DSDSDSES 369 (527)
T ss_dssp --------
T ss_pred cccccccc
Confidence 44444443
No 85
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=22.66 E-value=3.9e+02 Score=31.29 Aligned_cols=70 Identities=20% Similarity=0.173 Sum_probs=49.4
Q ss_pred CCceeecceeeeeecceEEEeccCCCCCCCCCCeEEEccCCeeeEEeeeeecCCCCcEEEEEcCCCCCcccccccCcEEE
Q 005475 300 HHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSIS 379 (695)
Q Consensus 300 d~~I~pIGtIsSIVdn~VIVkS~~e~~VLDeGSVLCLtEDRtvIGkV~EVFGPVk~PyYsVRFnS~eEI~~~LkvGtkVY 379 (695)
+..+..+|+|.+|.+.+|.|.+... ...|.++.+ +++ +.| +|++=-..-..++-|.+.. +|..|+.|.
T Consensus 22 ~~~~~~~G~V~~v~g~i~~v~gl~~---~~~ge~~~i-~~~-~~g---~V~~l~~~~v~~~~l~~~~----gi~~G~~V~ 89 (502)
T PRK13343 22 QPDAREIGRVESVGDGIAFVSGLPD---AALDELLRF-EGG-SRG---FAFNLEEELVGAVLLDDTA----DILAGTEVR 89 (502)
T ss_pred cceeEEeeEEEEEeCCEEEEeCCCC---CCCCCEEEE-CCC-cEE---EEEEecCCeEEEEEeeCCC----CCCCCCEeE
Confidence 3456789999999999999998653 446677766 454 555 5556566667777776533 567888888
Q ss_pred ec
Q 005475 380 FV 381 (695)
Q Consensus 380 YV 381 (695)
.-
T Consensus 90 ~t 91 (502)
T PRK13343 90 RT 91 (502)
T ss_pred ec
Confidence 74
No 86
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=22.51 E-value=60 Score=31.29 Aligned_cols=14 Identities=43% Similarity=0.641 Sum_probs=6.7
Q ss_pred HHHHHHhccCcCCc
Q 005475 211 AKKEVERGLGELGE 224 (695)
Q Consensus 211 ~~~e~~~~~~~~ge 224 (695)
|..+-+++|-.+|.
T Consensus 99 K~~kyk~rLk~LG~ 112 (136)
T PF04871_consen 99 KRKKYKERLKELGE 112 (136)
T ss_pred HHHHHHHHHHHcCC
Confidence 33444555555554
No 87
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=22.17 E-value=59 Score=35.24 Aligned_cols=9 Identities=22% Similarity=0.187 Sum_probs=4.5
Q ss_pred hHHHHHHHH
Q 005475 418 DEKEAEYKR 426 (695)
Q Consensus 418 DEkEae~Kr 426 (695)
+..|.-+|+
T Consensus 234 ~dIe~~~Kk 242 (324)
T PF05285_consen 234 SDIEGFHKK 242 (324)
T ss_pred HHHHhHHhh
Confidence 345555554
No 88
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=22.13 E-value=3.4e+02 Score=31.63 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=49.4
Q ss_pred eeecceeeeeecceEEEeccCCCCCCCCCCeEEEccCCeeeEEeeeeecCCCCcEEEEEcCCCCCcccccccCcEEEec
Q 005475 303 MLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFV 381 (695)
Q Consensus 303 I~pIGtIsSIVdn~VIVkS~~e~~VLDeGSVLCLtEDRtvIGkV~EVFGPVk~PyYsVRFnS~eEI~~~LkvGtkVYYV 381 (695)
+..+|+|.+|.+.+|.|.+... ...|.++.+ +++ ++| +|++=-..-.+++-|.+.. +|+.|+.|+.-
T Consensus 4 ~~~~G~V~~v~~~ii~v~Gl~~---~~~ge~~~i-~~~-~~g---~vi~~~~~~v~~~~l~~~~----gi~~G~~V~~t 70 (485)
T CHL00059 4 IVNTGTVLQVGDGIARIYGLDE---VMAGELVEF-EDG-TIG---IALNLESNNVGVVLMGDGL----MIQEGSSVKAT 70 (485)
T ss_pred eeeeEEEEEEeccEEEEecccc---CCcCCEEEE-CCC-CEE---EEEEEcCCEEEEEEeeCCC----CCCCCCEEEEC
Confidence 5678999999999999998742 556777776 454 455 6666677778888876543 56789999874
No 89
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=21.99 E-value=3.6e+02 Score=31.37 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=49.1
Q ss_pred CCceeecceeeeeecceEEEeccCCCCCCCCCCeEEEccCCeeeEEeeeeecCCCCcEEEEEcCCCCCcccccccCcEEE
Q 005475 300 HHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSIS 379 (695)
Q Consensus 300 d~~I~pIGtIsSIVdn~VIVkS~~e~~VLDeGSVLCLtEDRtvIGkV~EVFGPVk~PyYsVRFnS~eEI~~~LkvGtkVY 379 (695)
...+...|+|.+|.+.+|.|.+.. -...|.++.+ .++ ++| +|++=-..-.+++-|.+.. ++..|+.|.
T Consensus 22 ~~~~~~~G~V~~v~g~~v~v~g~~---~~~~ge~~~i-~~~-~~g---~Vi~~~~~~~~~~~~~~~~----gi~~g~~V~ 89 (502)
T PRK09281 22 EAEVEEVGTVISVGDGIARVYGLD---NVMAGELLEF-PGG-VYG---IALNLEEDNVGAVILGDYE----DIKEGDTVK 89 (502)
T ss_pred cceeEEEEEEEEEeCCEEEEECcc---ccccCCEEEE-CCC-cEE---EEEEEcCCeEEEEEecCcc----cccCCCeee
Confidence 345667899999999999999874 2556777776 455 566 4555455567777776543 567888887
Q ss_pred ec
Q 005475 380 FV 381 (695)
Q Consensus 380 YV 381 (695)
.-
T Consensus 90 ~~ 91 (502)
T PRK09281 90 RT 91 (502)
T ss_pred ec
Confidence 63
No 90
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=21.91 E-value=40 Score=33.97 Aligned_cols=9 Identities=22% Similarity=0.051 Sum_probs=3.8
Q ss_pred chhhhhccc
Q 005475 72 FGVLEKSLK 80 (695)
Q Consensus 72 f~~~~~~~~ 80 (695)
||-.-|-|+
T Consensus 36 ~GHWtYECk 44 (177)
T KOG3116|consen 36 AGHWTYECK 44 (177)
T ss_pred hccceeeec
Confidence 344444443
No 91
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=21.65 E-value=5.2e+02 Score=31.96 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=19.2
Q ss_pred CCCcCCCc--cCCCCCCCCCCCCccccCCCc
Q 005475 656 PGSIEAPQ--QFNMGASSSRGRKPYHRGGGR 684 (695)
Q Consensus 656 ~g~~~~~~--qf~~~~~~~~gr~~~~~~ggr 684 (695)
|++...+- ||-.++.-.-|=.|+||||=+
T Consensus 804 P~sl~~~p~~~f~sn~p~~~gf~pg~rggpp 834 (944)
T KOG4307|consen 804 PNSLNNGPQGQFRSNQPNDGGFRPGFRGGPP 834 (944)
T ss_pred CcccCCCCccccCCCCCCcCCcCCccCCCCC
Confidence 44555443 777777766777788887644
No 92
>KOG4822 consensus Predicted nuclear membrane protein involved in mRNA transport and sex determination via splicing modulation [RNA processing and modification; Signal transduction mechanisms]
Probab=21.21 E-value=3.1e+02 Score=35.61 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=9.1
Q ss_pred cCCCCcccccccchhc
Q 005475 57 DYSPNLDRIGLEKIEF 72 (695)
Q Consensus 57 ~~~~~~~~~~~~~~~f 72 (695)
+-++.++.+-.++++|
T Consensus 1132 ~~~s~~~q~~m~~~~~ 1147 (1906)
T KOG4822|consen 1132 DTNSLLDQLDMKKNPF 1147 (1906)
T ss_pred ccCcHHHHhhcchhhH
Confidence 3345556666666665
No 93
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=20.52 E-value=4.5e+02 Score=30.81 Aligned_cols=71 Identities=21% Similarity=0.211 Sum_probs=50.6
Q ss_pred CCCceeecceeeeeecceEEEeccCCCCCCCCCCeEEEccCCeeeEEeeeeecCCCCcEEEEEcCCCCCcccccccCcEE
Q 005475 299 PHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSI 378 (695)
Q Consensus 299 pd~~I~pIGtIsSIVdn~VIVkS~~e~~VLDeGSVLCLtEDRtvIGkV~EVFGPVk~PyYsVRFnS~eEI~~~LkvGtkV 378 (695)
....+...|+|.+|.+.++.|.+... ...|.++.+ .++ ++| +|+|=-..-.+++-|.+.. +|+.|+.|
T Consensus 21 ~~~~~~~~G~V~~v~g~ii~v~gl~~---~~~gEl~~i-~~~-~~g---~Vi~l~~~~v~~~~l~~~~----gi~~G~~V 88 (497)
T TIGR03324 21 PQLTVQEVGTVESVSTGIARVHGLPG---VGFEELLRF-PGG-LLG---IAFNVDEDEVGVVLLGEYS----HLQAGDEV 88 (497)
T ss_pred CCcceeEEEEEEEEeceEEEEEccCC---CCcCCEEEE-CCC-cEE---EEEEEcCCeEEEEEecCCc----CCcCCCEE
Confidence 44567789999999999999998653 556667766 443 455 6666566667777776543 57789998
Q ss_pred Eec
Q 005475 379 SFV 381 (695)
Q Consensus 379 YYV 381 (695)
+..
T Consensus 89 ~~t 91 (497)
T TIGR03324 89 ERT 91 (497)
T ss_pred EEC
Confidence 874
No 94
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=20.34 E-value=2.1e+02 Score=34.29 Aligned_cols=37 Identities=32% Similarity=0.311 Sum_probs=22.3
Q ss_pred ccccCccccccCCCCCCCCCCCC---cccc--cCCCCCCCCc
Q 005475 607 LLGQNGLNQTIGQGLPQQPACPS---VNAS--QGILPPNGLH 643 (695)
Q Consensus 607 ~~gq~~~Nq~~~~g~~~~~~~~~---~~~~--q~~~ps~~~~ 643 (695)
++|=|--||+.+.+.|.+|..|+ .+.+ +|.++..+.+
T Consensus 216 ~ig~~~~NQq~~~~~q~~p~~p~A~~~~qqpq~g~~~pqQ~q 257 (742)
T KOG4274|consen 216 LIGLHHQNQQQIQQQQQQPQRPIAQLQLQQPQQGQQQPQQQQ 257 (742)
T ss_pred ccccCchhhhhccccccccccccccccccCccccCCCccccc
Confidence 34556668887777777777766 2222 5556555433
Done!