BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005476
(695 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RMK|B Chain B, Toluene 4 Monooxygenase H With 4-bromophenol
pdb|3RMK|E Chain E, Toluene 4 Monooxygenase H With 4-bromophenol
Length = 306
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 271 GHVDKARRLFEQMNIKDVVAWSAMI-SGYSQA-RRCKEALG-VFHDMQMANVVPNEVTMV 327
G + LF+Q N ++ M+ G+ RC L +FH +QM++ ++
Sbjct: 88 GQESYVQSLFDQFNEREH---DQMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPA 144
Query: 328 SVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMP 385
S +S C +L ++ +W+ + + EL++T Y GL E+ E+++K P
Sbjct: 145 STISNCCILQTADSLRWL-THTAYRTHELSLT--------YPDAGLGEHERELWEKEP 193
>pdb|3Q14|B Chain B, Toluene 4 Monooxygenase Hd Complex With P-Cresol
pdb|3Q2A|B Chain B, Toluene 4 Monooxygenase Hd Complex With Inhibitor
P-Aminobenzoate
pdb|3Q3M|B Chain B, Toluene 4 Monooxygenase Hd Complex With Inhibitor
4-Bromobenzoate
pdb|3Q3M|F Chain F, Toluene 4 Monooxygenase Hd Complex With Inhibitor
4-Bromobenzoate
pdb|3Q3N|B Chain B, Toluene 4 Monooxygenase Hd Complex With P-Nitrophenol
pdb|3Q3O|B Chain B, Toluene 4 Monooxygenase Hd Complex With Phenol
Length = 307
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 271 GHVDKARRLFEQMNIKDVVAWSAMI-SGYSQA-RRCKEALG-VFHDMQMANVVPNEVTMV 327
G + LF+Q N ++ M+ G+ RC L +FH +QM++ ++
Sbjct: 89 GQESYVQSLFDQFNEREH---DQMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPA 145
Query: 328 SVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMP 385
S +S C +L ++ +W+ + + EL++T Y GL E+ E+++K P
Sbjct: 146 STISNCCILQTADSLRWL-THTAYRTHELSLT--------YPDAGLGEHERELWEKEP 194
>pdb|3RI7|B Chain B, Toluene 4 Monooxygenase Hd Mutant G103l
Length = 305
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 271 GHVDKARRLFEQMNIKDVVAWSAMI-SGYSQA-RRCKEALG-VFHDMQMANVVPNEVTMV 327
G + LF+Q N ++ M+ G+ RC L +FH +QM++ ++
Sbjct: 88 GQESYVQSLFDQFNEREH---DQMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPA 144
Query: 328 SVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMP 385
S +S C +L ++ +W+ + + EL++T Y GL E+ E+++K P
Sbjct: 145 STISNCCILQTADSLRWL-THTAYRTHELSLT--------YPDAGLGEHERELWEKEP 193
>pdb|3GE3|B Chain B, Crystal Structure Of The Reduced Toluene 4-Monooxygenase
Hd T201a Mutant Complex
pdb|3GE8|B Chain B, Toluene 4-Monooxygenase Hd T201a Diferric, Resting State
Complex
pdb|3GE8|F Chain F, Toluene 4-Monooxygenase Hd T201a Diferric, Resting State
Complex
pdb|3I5J|B Chain B, Diferric Resting State Toluene 4-Monooxygenase Hd Complex
pdb|3I63|B Chain B, Peroxide Bound Toluene 4-Monooxygenase
Length = 327
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 271 GHVDKARRLFEQMNIKDVVAWSAMI-SGYSQA-RRCKEALG-VFHDMQMANVVPNEVTMV 327
G + LF+Q N ++ M+ G+ RC L +FH +QM++ ++
Sbjct: 89 GQESYVQSLFDQFNEREH---DQMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPA 145
Query: 328 SVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMP 385
S +S C +L ++ +W+ + + EL++T Y GL E+ E+++K P
Sbjct: 146 STISNCCILQTADSLRWL-THTAYRTHELSLT--------YPDAGLGEHERELWEKEP 194
>pdb|3DHG|B Chain B, Crystal Struture Of Toluene 4-monoxygenase Hydroxylase
pdb|3DHG|E Chain E, Crystal Struture Of Toluene 4-monoxygenase Hydroxylase
pdb|3DHH|B Chain B, Crystal Structure Of Resting State Toluene 4-monoxygenase
Hydroxylase Complexed With Effector Protein
pdb|3DHI|B Chain B, Crystal Structure Of Reduced Toluene 4-monoxygenase
Hydroxylase Complexed With Effector Protein
Length = 327
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 271 GHVDKARRLFEQMNIKDVVAWSAMI-SGYSQA-RRCKEALG-VFHDMQMANVVPNEVTMV 327
G + LF+Q N ++ M+ G+ RC L +FH +QM++ ++
Sbjct: 89 GQESYVQSLFDQFNEREH---DQMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPA 145
Query: 328 SVLSCCAVLGALETGKWVHLYVKKKRMELTITLGTALMDFYAKCGLIENAVEVFKKMP 385
S +S C +L ++ +W+ + + EL++T Y GL E+ E+++K P
Sbjct: 146 STISNCCILQTADSLRWL-THTAYRTHELSLT--------YPDAGLGEHERELWEKEP 194
>pdb|2NVA|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|B Chain B, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|C Chain C, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|D Chain D, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|E Chain E, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|F Chain F, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|G Chain G, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|H Chain H, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
Length = 372
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 38 QVHAHLIKSRFHLNPTISENLLEAAAILIPATTMDYALSIFHKINEPDSSAYNIMIRAFT 97
+ H H KS + +P I E+L++ IL P T YA+ K N + + +
Sbjct: 10 KAHPHQTKSFYVSSPKIVEDLIDQWTILFPRVTPHYAV----KCNNDEVLLKTMCDKNVN 65
Query: 98 LKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSR-IRALEEGEQI 143
+ + K ++Q V P R FA T+K I A ++G I
Sbjct: 66 FDCASSSEI---KKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVDI 109
>pdb|2NV9|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|B Chain B, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|C Chain C, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|D Chain D, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|E Chain E, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|F Chain F, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|G Chain G, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|H Chain H, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
Length = 372
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 38 QVHAHLIKSRFHLNPTISENLLEAAAILIPATTMDYALSIFHKINEPDSSAYNIMIRAFT 97
+ H H KS + +P I E+L++ IL P T YA+ K N + + +
Sbjct: 10 KAHPHQTKSFYVSSPKIVEDLIDQWTILFPRVTPHYAV----KCNNDEVLLKTMCDKNVN 65
Query: 98 LKQSPQEAVMLYKTMLQNSVEPDRFTFACTLKACSR-IRALEEGEQI 143
+ + K ++Q V P R FA T+K I A ++G I
Sbjct: 66 FDCASSSEI---KKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVDI 109
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 473 AGLVEEAYQFIKNMPI-PPNPVIWRTLLAACRAHKNVKVGEESLKNLVTLEPMHSGDYIL 531
GL+E AYQ++K + + + + CR +K + V + + +HSG +
Sbjct: 158 GGLMENAYQYLKQFGLETESSYPYTAVEGQCRYNKQLGVAK-----VTGFYTVHSGSEVE 212
Query: 532 LSDIYASAGRCEDALRVMNQ--MREQGIKKTPGCSLIELD 569
L ++ + G A+ V + M GI ++ CS + ++
Sbjct: 213 LKNLVGAEGPAAVAVDVESDFMMYRSGIYQSQTCSPLRVN 252
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 26/223 (11%)
Query: 403 GQGERALETY-YIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVS-MSRDFDLEPR 459
GQ + A+E Y + +R ++P+ + +I + +A G ++ + +VS + + DL
Sbjct: 81 GQLQEAIEHYRHALR---LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137
Query: 460 MEHYGCMVDILGRAGLVEEAYQ-FIKNMPIPPN-PVIWRTLLAACRAHKNVKVGEESLKN 517
G ++ LGR +EEA ++K + PN V W L A + + +
Sbjct: 138 RSDLGNLLKALGR---LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194
Query: 518 LVTLEPMHSGDYILLSDIYASAGRCEDA----LRVMNQMREQG-IKKTPGC-----SLIE 567
VTL+P YI L ++ A + A LR ++ + C LI+
Sbjct: 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID 254
Query: 568 LDGEIYEFLAEDNMCPHFKEVYDATENMMKRIKSAGYVPNTAD 610
L + Y E + PHF + Y N+ +K G V D
Sbjct: 255 LAIDTYRRAIE--LQPHFPDAYC---NLANALKEKGSVAEAED 292
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 87/211 (41%), Gaps = 15/211 (7%)
Query: 402 NGQGERALETYYIMREKNIEPNDV-AFIAVLSACSHVGMVDEGRELFVSMSRDFDLEPRM 460
N QGE L ++ + ++PN + A+I + + + D ++ R L P
Sbjct: 180 NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL---RALSLSPNH 236
Query: 461 EH-YGCMVDILGRAGLVEEAYQ-FIKNMPIPPN-PVIWRTLLAACRAHKNVKVGEESLKN 517
+G + + GL++ A + + + + P+ P + L A + +V E+
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296
Query: 518 LVTLEPMHSGDYILLSDIYASAGRCEDALRVMNQ----MREQGIKKTPGCSLIELDGEIY 573
+ L P H+ L++I G E+A+R+ + E + S+++ G++
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356
Query: 574 EFLAEDN----MCPHFKEVYDATENMMKRIK 600
E L + P F + Y N +K ++
Sbjct: 357 EALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 562 GCSLIELDGE---IYEFLAEDNMCPHFKEVYDATENMMKRIKSAGYVPN 607
CS++ GE + E + NM P FKE+Y EN + K A Y N
Sbjct: 591 NCSVLACSGEDIHVIEKMHHVNMTPEFKELYIVRENKTLQKKCADYQIN 639
>pdb|2VC6|A Chain A, Structure Of Mosa From S. Meliloti With Pyruvate Bound
pdb|2VC6|B Chain B, Structure Of Mosa From S. Meliloti With Pyruvate Bound
Length = 292
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 557 IKKTPGCSLIELDGEIYEFLAEDNMCPHFKEVYDATENMMK 597
+ PG S IE+ E + ED CP+ K V DAT N+++
Sbjct: 131 VYNIPGRSAIEIHVETLARIFED--CPNVKGVXDATGNLLR 169
>pdb|3UR1|B Chain B, The Structure Of A Ternary Complex Between Chea Domains P4
And P5 With Chew And With A Truncated Fragment Of Tm14,
A Chemoreceptor Analog From Thermotoga Maritima
Length = 139
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 206 IVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVD 265
I+ + N + LG+ FDE + ++++A R D+E+G + + + N +T V D
Sbjct: 51 IIPVVNLAKILGISFDEQKMKSIIVA--RTKDVEVGFLVDRVLGVLRITENQLDLTNVSD 108
Query: 266 MYAK--CGHVDKARRLFEQMNIKDVV 289
+ K G V RL ++I ++
Sbjct: 109 KFGKKSKGLVKTDGRLIIYLDIDKII 134
>pdb|3OP5|A Chain A, Human Vaccinia-Related Kinase 1
pdb|3OP5|B Chain B, Human Vaccinia-Related Kinase 1
pdb|3OP5|C Chain C, Human Vaccinia-Related Kinase 1
pdb|3OP5|D Chain D, Human Vaccinia-Related Kinase 1
Length = 364
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 518 LVTLEPMHSGDYILLSDIYASAGRCEDALRVMN--QMREQGIKKTPGCSLIELDGEIYEF 575
+V +EP +G Y A + E + + +++ G+ K G L + +G+ Y F
Sbjct: 69 VVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRF 128
Query: 576 LAEDNMCPHFKEVYDATENMMKR 598
+ D +++Y+A R
Sbjct: 129 MIMDRFGSDLQKIYEANAKRFSR 151
>pdb|1K0S|A Chain A, Solution Structure Of The Chemotaxis Protein Chew From The
Thermophilic Organism Thermotoga Maritima
Length = 151
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 206 IVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVD 265
I+ + N + LG+ FDE + ++++A R D+E+G + + + N +T V D
Sbjct: 59 IIPVVNLAKILGISFDEQKMKSIIVA--RTKDVEVGFLVDRVLGVLRITENQLDLTNVSD 116
Query: 266 MYAK--CGHVDKARRLFEQMNIKDVV 289
+ K G V RL ++I ++
Sbjct: 117 KFGKKSKGLVKTDGRLIIYLDIDKII 142
>pdb|2CH4|W Chain W, Complex Between Bacterial Chemotaxis Histidine Kinase Chea
Domains P4 And P5 And Receptor-Adaptor Protein Chew
pdb|2CH4|Y Chain Y, Complex Between Bacterial Chemotaxis Histidine Kinase Chea
Domains P4 And P5 And Receptor-Adaptor Protein Chew
Length = 151
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 206 IVDLFNEMRDLGVKFDEVTLINVLMACGRLADIELGGWISEYMEEKELNGNVKLMTAVVD 265
I+ + N + LG+ FDE + ++++A R D+E+G + + + N +T V D
Sbjct: 59 IIPVVNLAKILGISFDEQKMKSIIVA--RTKDVEVGFLVDRVLGVLRITENQLDLTNVSD 116
Query: 266 MYAK--CGHVDKARRLFEQMNIKDVV 289
+ K G V RL ++I ++
Sbjct: 117 KFGKKSKGLVKTDGRLIIYLDIDKII 142
>pdb|3GA3|A Chain A, Crystal Structure Of The C-Terminal Domain Of Human Mda5
Length = 133
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 562 GCSLIELDGE---IYEFLAEDNMCPHFKEVYDATENMMKRIKSAGYVPN 607
CS++ GE + E + NM P FKE+Y EN + K A Y N
Sbjct: 17 NCSVLACSGEDIHVIEKMHHVNMTPEFKELYIVRENKALQKKCADYQIN 65
>pdb|1SP3|A Chain A, Crystal Structure Of Octaheme Cytochrome C From Shewanella
Oneidensis
Length = 443
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 601 SAGYVPNTADARLDAEEDDKEASVAHHSEKLAIAFGLIRASPGTTIRISKNLRVCTDCHN 660
S Y D +D++ ++ + H +EK I+ + SPG I C +CH+
Sbjct: 160 SMAYPDKATDVHMDSDGNNFQCQNCHTTEKHQISGNAMGVSPGGIDHIG-----CENCHD 214
Query: 661 ATKIISKVFNREIVV 675
+ +K N
Sbjct: 215 SAPHSNKKLNTHTAT 229
>pdb|2LAV|A Chain A, Nmr Solution Structure Of Human Vaccinia-Related Kinase 1
Length = 361
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 518 LVTLEPMHSGDYILLSDIYASAGRCEDALRVMN--QMREQGIKKTPGCSLIELDGEIYEF 575
+V +EP +G Y A + E + + +++ G+ K G L + +G+ Y F
Sbjct: 69 VVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRF 128
Query: 576 LAEDNMCPHFKEVYDATENMMKR 598
+ D +++Y+A R
Sbjct: 129 MIMDRFGSDLQKIYEANAKRFSR 151
>pdb|2KTY|A Chain A, Solution Structure Of Human Vaccinia Related Kinase-1
pdb|2KUL|A Chain A, Solution Structure Of Human Vaccinia Related Kinase
1(Vrk1)
Length = 368
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 518 LVTLEPMHSGDYILLSDIYASAGRCEDALRVMN--QMREQGIKKTPGCSLIELDGEIYEF 575
+V +EP +G Y A + E + + +++ G+ K G L + +G+ Y F
Sbjct: 69 VVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRF 128
Query: 576 LAEDNMCPHFKEVYDATENMMKR 598
+ D +++Y+A R
Sbjct: 129 MIMDRFGSDLQKIYEANAKRFSR 151
>pdb|2RQB|A Chain A, Solution Structure Of Mda5 Ctd
Length = 135
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 563 CSLIELDGE---IYEFLAEDNMCPHFKEVYDATENMMKRIKSAGYVPN 607
CS++ GE + E + NM P FKE+Y EN + K A Y N
Sbjct: 20 CSVLACSGEDIHVIEKMHHVNMTPEFKELYIVRENKALQKKCADYQIN 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,633,372
Number of Sequences: 62578
Number of extensions: 776522
Number of successful extensions: 1863
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1858
Number of HSP's gapped (non-prelim): 24
length of query: 695
length of database: 14,973,337
effective HSP length: 106
effective length of query: 589
effective length of database: 8,340,069
effective search space: 4912300641
effective search space used: 4912300641
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)